Citrus Sinensis ID: 021484

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQRECIIS
Secondary Structure (PSIPRED)
cEEEEcccccEEEEEEEcccccccccccccccEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccEEEEccccccccccccEEEEEEccccEEEEEEccccEEEEEEccccccccccccccccccccccEEEEcccccEEEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHcHHHHHHHHcccccccccccccccccEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccEEEEEEcccEcccccccEEEEEEEEEccccccEEEEEccccEEEEEEccccccccccccccccEEcccccccccccccEEEEEEccccEEEEEEccccEEEEccccccccccccccccccccccccEEEEccccccEEEEEEEEccccEEEEEEcccccEEEEEcccHHHHEEEcccccEEEEEcccccccEEEEccccccEEEEccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHEEccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
mwqfdlrsdsatrlfycssfsenskqpmnsirlnaividprnpnyfavggsdeyaRVYDirkchwyspissdtpvdtfcprhligknnihitglaysntSELLISYNDELVYLFEknmglgpsplslspedlqkreepqvysghrnsqtvkgvnffgpndeyvmsgsdcghlfiwkkkggKLVRLMVGdrhvvnqlephphipmfatcgiektvklwapmptdfpplpdnAEKIMKANKqgredhsritltpDVIMHVLRLQRRQTLAYRErrynaadfesdeeegetyllgfsdsdassegggnqreciis
Flexible Loop (DISEMBL)
mwqfdlrsdsatRLFYCSSfsenskqpmnSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPqvysghrnsqtvkgvNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANkqgredhsritltpdvimhVLRLQRRQTLAYRERRynaadfesdeeeGETYLLGfsdsdassegggnqreciis
Low Complexity Region (SEG)
MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQRECIIS
Disordered region (IsUnstruct)
************RLFYCSS**********SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNM*******************************VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP**************************ITLTPDVIMHVLRLQRRQTLAYRERRY**************************************
Disordered Region (DISOPRED)
MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD**************************LTPDVIMHVLRL***************************************************
Disordered Region (DISEMBL)
********DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDL************RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAA**********TYLLGFSDS****************
Disordered Region (DISPRO)
MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE*****************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQRECIIS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q5R448	597	DDB1- and CUL4-associated	yes	no	0.701	0.366	0.403	1e-43
Q6NRH1	601	DDB1- and CUL4-associated	N/A	no	0.711	0.369	0.404	2e-43
Q8N7N5	591	DDB1- and CUL4-associated	yes	no	0.711	0.375	0.4	3e-43
Q5TAQ9	597	DDB1- and CUL4-associated	yes	no	0.701	0.366	0.399	8e-43
Q5U2M6	591	DDB1- and CUL4-associated	yes	no	0.701	0.370	0.399	8e-43
Q28I90	604	DDB1- and CUL4-associated	yes	no	0.711	0.367	0.4	9e-43
A6NGE4	600	DDB1- and CUL4-associated	no	no	0.823	0.428	0.354	8e-38
P0C7V8	602	DDB1- and CUL4-associated	no	no	0.714	0.370	0.361	5e-36
Q58WW2	860	DDB1- and CUL4-associated	no	no	0.253	0.091	0.512	1e-19
Q5R9B8	860	DDB1- and CUL4-associated	no	no	0.253	0.091	0.512	1e-19

>sp|Q5R448|DCAF8_PONAB DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/253 (40%), Positives = 150/253 (59%), Gaps = 34/253 (13%)

Query: 1   MWQFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 59
           ++  DLR D  A++L         +K+    + L  I ++P N + FAVGG D++ R+YD
Sbjct: 308 VFTIDLRQDRPASKLVV-------TKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYD 360

Query: 60  IRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYS-NTSELLISYNDELVYLFEKN 117
            RK        ++  +  FCP HL+ G++  +IT L YS + +ELL SYNDE +YLF  +
Sbjct: 361 QRK---IDENENNGVLKKFCPHHLVNGESKANITCLVYSHDGTELLASYNDEDIYLFNSS 417

Query: 118 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 177
              G   +        KR     Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K
Sbjct: 418 HSDGAQYV--------KR-----YKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEK 464

Query: 178 KGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMP---TDFPPLPDNAEK 233
              ++++ M GD+  VVN LEPHPH+P+ AT G++  VK+WAP     T+   L D    
Sbjct: 465 SSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTGLKD---- 520

Query: 234 IMKANKQGREDHS 246
           ++K NK+ R++ S
Sbjct: 521 VIKKNKRERDEDS 533

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.
Pongo abelii (taxid: 9601)

>sp|Q6NRH1|DCAF8_XENLA DDB1- and CUL4-associated factor 8 OS=Xenopus laevis GN=dcaf8 PE=2 SV=1

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/250 (40%), Positives = 148/250 (59%), Gaps = 28/250 (11%)

Query: 1   MWQFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 59
           ++  DLR D  A+RL         +K+  + + L  I ++P N   FAVGG D++ R+YD
Sbjct: 311 VFTIDLRQDRPASRLVV-------TKEKESKVGLYTIYVNPANTYQFAVGGRDQFVRIYD 363

Query: 60  IRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYS-NTSELLISYNDELVYLFEKN 117
            RK    +   ++  +  FCP HL+  +   +IT L YS + SELL SYNDE +YLF  +
Sbjct: 364 QRK---INENVNNGVLKKFCPHHLVTSEAKANITCLVYSHDGSELLASYNDEDIYLFNSS 420

Query: 118 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 177
              G              E  + Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K
Sbjct: 421 HSDGA-------------EYIKRYKGHRNNATVKGVNFYGPRSEFVVSGSDCGHIFLWEK 467

Query: 178 KGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMK 236
              ++V+ M GD+  VVN LEPHPH+P+ AT G++  VK+W P   + P   D  ++++K
Sbjct: 468 SSCQIVQFMDGDKGGVVNCLEPHPHLPVLATSGLDYDVKIWLPTAKE-PTELDGLKEVIK 526

Query: 237 ANKQGREDHS 246
            NK+ R++ S
Sbjct: 527 KNKRERDEDS 536

Xenopus laevis (taxid: 8355)

>sp|Q8N7N5|DCAF8_MOUSE DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1

 Score =  176 bits (445), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/250 (40%), Positives = 148/250 (59%), Gaps = 28/250 (11%)

Query: 1   MWQFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 59
           ++  DLR D  A++L         +K+    + L  I ++P N + FAVGG D+Y R+YD
Sbjct: 302 VFTIDLRQDRPASKLVV-------TKEKEKKVGLYTIYVNPANTHQFAVGGRDQYVRIYD 354

Query: 60  IRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYS-NTSELLISYNDELVYLFEKN 117
            RK        ++  +  FCP HL+  ++  +IT L YS + +ELL SYNDE +YLF  +
Sbjct: 355 QRK---IDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSS 411

Query: 118 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 177
              G   +        KR     Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K
Sbjct: 412 HSDGAQYI--------KR-----YKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEK 458

Query: 178 KGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMK 236
              ++++ M GD+  VVN LEPHPH+P+ AT G++  VK+WAP       L    ++++K
Sbjct: 459 SSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELT-GLKEVIK 517

Query: 237 ANKQGREDHS 246
            NK+ R++ S
Sbjct: 518 KNKRERDEDS 527

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|Q5TAQ9|DCAF8_HUMAN DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1

 Score =  174 bits (441), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 101/253 (39%), Positives = 149/253 (58%), Gaps = 34/253 (13%)

Query: 1   MWQFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 59
           ++  DLR D  A++L         +K+    + L  I ++P N + FAVGG D++ R+YD
Sbjct: 308 VFTIDLRQDRPASKLVV-------TKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYD 360

Query: 60  IRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYS-NTSELLISYNDELVYLFEKN 117
            RK        ++  +  FCP HL+  ++  +IT L YS + +ELL SYNDE +YLF  +
Sbjct: 361 QRK---IDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSS 417

Query: 118 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 177
              G   +        KR     Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K
Sbjct: 418 HSDGAQYV--------KR-----YKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEK 464

Query: 178 KGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMP---TDFPPLPDNAEK 233
              ++++ M GD+  VVN LEPHPH+P+ AT G++  VK+WAP     T+   L D    
Sbjct: 465 SSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTGLKD---- 520

Query: 234 IMKANKQGREDHS 246
           ++K NK+ R++ S
Sbjct: 521 VIKKNKRERDEDS 533

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5U2M6|DCAF8_RAT DDB1- and CUL4-associated factor 8 OS=Rattus norvegicus GN=Dcaf8 PE=2 SV=1

 Score =  174 bits (441), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 101/253 (39%), Positives = 149/253 (58%), Gaps = 34/253 (13%)

Query: 1   MWQFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 59
           ++  DLR D  A++L         +K+    + L  I ++P N + FAVGG D++ R+YD
Sbjct: 302 VFTIDLRQDRPASKLVV-------TKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYD 354

Query: 60  IRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYS-NTSELLISYNDELVYLFEKN 117
            RK        ++  +  FCP HL+  ++  +IT L YS + +ELL SYNDE +YLF  +
Sbjct: 355 QRK---IDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSS 411

Query: 118 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 177
              G   +        KR     Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K
Sbjct: 412 HSDGAQYI--------KR-----YKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEK 458

Query: 178 KGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMP---TDFPPLPDNAEK 233
              ++++ M GD+  VVN LEPHPH+P+ AT G++  VK+WAP     T+   L D    
Sbjct: 459 SSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTGLKD---- 514

Query: 234 IMKANKQGREDHS 246
           ++K NK+ R++ S
Sbjct: 515 VIKKNKRERDEDS 527

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q28I90|DCAF8_XENTR DDB1- and CUL4-associated factor 8 OS=Xenopus tropicalis GN=dcaf8 PE=2 SV=1

 Score =  174 bits (440), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 100/250 (40%), Positives = 147/250 (58%), Gaps = 28/250 (11%)

Query: 1   MWQFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 59
           ++  DLR D  A+RL         +K+    + L  I ++P N   FAVGG D++ R+YD
Sbjct: 314 VFTIDLRQDRPASRLVV-------TKEKEKKVGLYTIYVNPANTYQFAVGGRDQFVRIYD 366

Query: 60  IRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYS-NTSELLISYNDELVYLFEKN 117
            RK    +   ++  +  FCP HL+  +   +IT L YS + SELL SYNDE +YLF  +
Sbjct: 367 QRK---INENVNNGVLKKFCPHHLVTSEAKANITCLVYSHDGSELLASYNDEDIYLFNSS 423

Query: 118 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 177
              G              E  + Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K
Sbjct: 424 HSDGA-------------EYIKRYKGHRNNATVKGVNFYGPRSEFVVSGSDCGHIFLWEK 470

Query: 178 KGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMK 236
              ++V+ M GD+  VVN LEPHPH+P+ AT G++  VK+W P   + P   +  ++++K
Sbjct: 471 SSCQIVQFMDGDKGGVVNCLEPHPHLPVLATSGLDYDVKIWLPTAKE-PTELNGLKEVIK 529

Query: 237 ANKQGREDHS 246
            NK+ R++ S
Sbjct: 530 KNKRERDEDS 539

Xenopus tropicalis (taxid: 8364)

>sp|A6NGE4|DC8L1_HUMAN DDB1- and CUL4-associated factor 8-like protein 1 OS=Homo sapiens GN=DCAF8L1 PE=2 SV=1

 Score =  157 bits (398), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 104/293 (35%), Positives = 157/293 (53%), Gaps = 36/293 (12%)

Query: 1   MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDI 60
           ++  DLR D        +   EN K+    + L  I ++P N   FAVGG D++ R+YD 
Sbjct: 311 VFTIDLRQDRPASKVVVTR--ENDKK----VGLYTISMNPANIYQFAVGGHDQFVRIYDQ 364

Query: 61  RKCHWYSPISSDTPVDTFCPRHLIGKN-NIHITGLAYS-NTSELLISYNDELVYLFEKNM 118
           R+        ++  +  F P HL+  +   +IT + YS + +ELL SYNDE +YLF  ++
Sbjct: 365 RR---IDKKENNGVLKKFTPHHLVYCDFPTNITCVVYSHDGTELLASYNDEDIYLFNSSL 421

Query: 119 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 178
             G   +        KR     Y GHRN+ T+K VNF+GP  E+V+SGSDCGH+F W+K 
Sbjct: 422 SDGAQYV--------KR-----YKGHRNNDTIKCVNFYGPRSEFVVSGSDCGHVFFWEKS 468

Query: 179 GGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAP---MPTDFPPLPDNAEKI 234
             ++++ M GDR  +VN LEPHP++P+ AT G+++ V++W P     T+   L D    +
Sbjct: 469 SSQIIQFMEGDRGDIVNCLEPHPYLPVLATSGLDQHVRIWTPTAKTATELTGLKD----V 524

Query: 235 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRER---RYNAADFESDEE 284
           +K NKQ R D   +  T      +LR   R  L    +   R + A+F  +EE
Sbjct: 525 IKKNKQER-DEDNLNYTDSFDNRMLRFFVRHLLQRAHQPGWRDHGAEFPDEEE 576

Homo sapiens (taxid: 9606)

>sp|P0C7V8|DC8L2_HUMAN DDB1- and CUL4-associated factor 8-like protein 2 OS=Homo sapiens GN=DCAF8L2 PE=2 SV=1

 Score =  151 bits (382), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 90/249 (36%), Positives = 136/249 (54%), Gaps = 26/249 (10%)

Query: 1   MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDI 60
           ++  DLR D        +   EN K+    + L  I ++P N   FAVGG D++ R+YD 
Sbjct: 314 VFTIDLRQDRPASKVVVTR--ENDKK----VGLYTITVNPANTYQFAVGGQDQFVRIYDQ 367

Query: 61  RKCHWYSPISSDTPVDTFCPRHLIGKN-NIHITGLAYS-NTSELLISYNDELVYLFEKNM 118
           RK        ++  +  F P HL+  +   +IT + YS + +ELL SYND+ +YLF  + 
Sbjct: 368 RKI---DKKENNGVLKKFTPHHLVNCDFPTNITCVVYSHDGTELLASYNDDDIYLFNSSH 424

Query: 119 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 178
             G            KR     + GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F W+K 
Sbjct: 425 SDGAQ--------YSKR-----FKGHRNNTTVKGVNFYGPRSEFVVSGSDCGHIFFWEKS 471

Query: 179 GGKLVRLMVGDRH-VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKA 237
             ++++ + G R   +N LEPHP++P+ A  G++  VK+W P       L    +K++K 
Sbjct: 472 SCQIIQFLKGSREGTINCLEPHPYLPVLACSGLDHDVKIWTPTAKAATELT-GLKKVIKK 530

Query: 238 NKQGREDHS 246
           NK  R++ S
Sbjct: 531 NKWERDEDS 539

Homo sapiens (taxid: 9606)

>sp|Q58WW2|DCAF6_HUMAN DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 59/82 (71%), Gaps = 3/82 (3%)

Query: 140 VYSGHRNSQT-VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 198
           VY GHRNS+T +K  NF+G N  +VMSGSDCGH+FIW +   + + L+  D HVVN L+P
Sbjct: 712 VYKGHRNSRTMIKEANFWGAN--FVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQP 769

Query: 199 HPHIPMFATCGIEKTVKLWAPM 220
           HP  P+ A+ GI+  +K+W+P+
Sbjct: 770 HPFDPILASSGIDYDIKIWSPL 791

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5R9B8|DCAF6_PONAB DDB1- and CUL4-associated factor 6 OS=Pongo abelii GN=DCAF6 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 59/82 (71%), Gaps = 3/82 (3%)

Query: 140 VYSGHRNSQT-VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 198
           VY GHRNS+T +K  NF+G N  +VMSGSDCGH+FIW +   + + L+  D HVVN L+P
Sbjct: 712 VYKGHRNSRTMIKEANFWGAN--FVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQP 769

Query: 199 HPHIPMFATCGIEKTVKLWAPM 220
           HP  P+ A+ GI+  +K+W+P+
Sbjct: 770 HPFDPILASSGIDYDIKIWSPL 791

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
255582975	479	WD-repeat protein, putative [Ricinus com	0.993	0.647	0.759	1e-140
225435193	479	PREDICTED: DDB1- and CUL4-associated fac	0.990	0.645	0.718	1e-129
356557481	488	PREDICTED: DDB1- and CUL4-associated fac	0.993	0.635	0.721	1e-128
356547206	488	PREDICTED: DDB1- and CUL4-associated fac	0.993	0.635	0.708	1e-126
357453735	478	DDB1- and CUL4-associated factor [Medica	0.993	0.648	0.682	1e-124
113205238	454	WD domain containing protein, putative [	0.974	0.669	0.681	1e-120
449463637	480	PREDICTED: DDB1- and CUL4-associated fac	0.990	0.643	0.643	1e-115
297815706	481	transducin family protein [Arabidopsis l	0.983	0.638	0.628	1e-113
15231191	481	transducin/WD40 domain-containing protei	0.983	0.638	0.628	1e-112
334185746	515	transducin/WD40 domain-containing protei	0.983	0.596	0.628	1e-112

>gi|255582975|ref|XP_002532257.1| WD-repeat protein, putative [Ricinus communis] gi|223528045|gb|EEF30123.1| WD-repeat protein, putative [Ricinus communis]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/312 (75%), Positives = 273/312 (87%), Gaps = 2/312 (0%)

Query: 3   QFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 62
            FDLRS SAT+LF CSSFSENS++P N IRLNAIVIDPRNP+YFAVGGSDEYARVYDIRK
Sbjct: 168 HFDLRSWSATKLFCCSSFSENSRRPSNWIRLNAIVIDPRNPHYFAVGGSDEYARVYDIRK 227

Query: 63  CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGP 122
           C W +  +SD  V+TFCPRHLIG  N+HITGLAYS+TSELL SYNDEL+YLF+K+MG+GP
Sbjct: 228 CRWDASSNSDIAVNTFCPRHLIGTKNVHITGLAYSSTSELLASYNDELIYLFQKSMGMGP 287

Query: 123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182
            PLS+S EDLQK EEPQVY GHRNS+TVKGV+FFGPNDEYV+SGSDCG++FIWKK+GGKL
Sbjct: 288 YPLSISSEDLQKLEEPQVYLGHRNSKTVKGVSFFGPNDEYVLSGSDCGNIFIWKKQGGKL 347

Query: 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR 242
           VRLM GDR VVNQ +PHPH+PMFATCGIEK+VKLW PM ++   +PDN EKIM++N+QGR
Sbjct: 348 VRLMFGDRQVVNQFDPHPHMPMFATCGIEKSVKLWIPMASEDSSIPDNVEKIMESNRQGR 407

Query: 243 EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEG 302
           EDHS+++LTPDVIMHVLRLQRRQTLAY ERRY+  D ESDE+EG+ Y+LGFS  DASSE 
Sbjct: 408 EDHSQVSLTPDVIMHVLRLQRRQTLAYIERRYSRGDVESDEDEGDAYVLGFSAGDASSEE 467

Query: 303 G--GNQRECIIS 312
           G  GN REC IS
Sbjct: 468 GSEGNSRECNIS 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435193|ref|XP_002284848.1| PREDICTED: DDB1- and CUL4-associated factor 8 [Vitis vinifera] gi|297746195|emb|CBI16251.3| unnamed protein product [Vitis vinifera]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/313 (71%), Positives = 265/313 (84%), Gaps = 4/313 (1%)

Query: 3   QFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 62
            FDLRS+SAT+LFYCSSF+E ++Q  N+I LNAIVIDPRNPNYFAVGGSDEYARVYDIRK
Sbjct: 168 HFDLRSNSATKLFYCSSFTELNRQSRNNISLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 227

Query: 63  CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGP 122
               S  + D PV+TFCP HL+G + ++ITGLAYSNTSELL+SYNDEL+YLF+KNMG+GP
Sbjct: 228 HQCDSSNNLDGPVNTFCPHHLVGAD-VYITGLAYSNTSELLVSYNDELIYLFQKNMGMGP 286

Query: 123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182
           +PLS+ PE+LQK E+PQVY GHRNSQTVK V+FFGP D+YV+SGSDCGH+F+WKKKG KL
Sbjct: 287 TPLSVPPEELQKLEKPQVYLGHRNSQTVKSVSFFGPTDDYVLSGSDCGHIFVWKKKGAKL 346

Query: 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR 242
           VRL  GD+ +VN LEPHP++P+FA+CGIE ++KLW PM     PLPD+AEKIM++N+QGR
Sbjct: 347 VRLTAGDQQIVNHLEPHPYMPIFASCGIENSIKLWIPMADGSLPLPDDAEKIMESNRQGR 406

Query: 243 EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEE-EGETYLLGFSDSDASSE 301
           EDHS ITLTPDVIMHVLRLQRRQ  AY ERRY+ AD E+DEE EGE YLLGFSD +ASSE
Sbjct: 407 EDHSLITLTPDVIMHVLRLQRRQNAAYIERRYDRADIENDEEDEGEAYLLGFSDGEASSE 466

Query: 302 GG--GNQRECIIS 312
            G  GN  EC IS
Sbjct: 467 EGFTGNTAECNIS 479

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557481|ref|XP_003547044.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Glycine max]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/312 (72%), Positives = 258/312 (82%), Gaps = 2/312 (0%)

Query: 3   QFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 62
            FDLRS+SAT+LF CSS   N+KQ ++ + LN+IVIDPRNP YFA+GGSDEYARVYDIRK
Sbjct: 177 HFDLRSNSATKLFCCSSSIGNNKQTLSKVGLNSIVIDPRNPYYFAIGGSDEYARVYDIRK 236

Query: 63  CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGP 122
           C W S  +SD PV+TFCP HLIG NN+HITGLAYS+ SELL+SYNDEL+YLFEKN+    
Sbjct: 237 CQWGSARNSDRPVNTFCPCHLIGSNNVHITGLAYSSFSELLVSYNDELIYLFEKNVHSDS 296

Query: 123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182
           SP S + ED +   E QVYSGHRN+QT+KGVNFFGPNDEY+MSGSDCGH+FIWKKK  KL
Sbjct: 297 SPSSATSEDPKNIHEAQVYSGHRNAQTIKGVNFFGPNDEYIMSGSDCGHIFIWKKKEAKL 356

Query: 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR 242
           VRLMVGD+HVVNQLE HPHIP+ ATCGIEK VK+WAP+  D PPLP N ++IM+ N+QGR
Sbjct: 357 VRLMVGDQHVVNQLEAHPHIPILATCGIEKNVKIWAPLGNDIPPLPANVKEIMETNRQGR 416

Query: 243 EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSE- 301
           ED SR+TLTPDVIMHVLRLQRRQTLAY ERR+N AD  SDEE+ E YLLGFSD DASSE 
Sbjct: 417 EDRSRVTLTPDVIMHVLRLQRRQTLAYIERRHNRADIVSDEEDAEGYLLGFSDGDASSEE 476

Query: 302 -GGGNQRECIIS 312
              GN R+C IS
Sbjct: 477 DSPGNSRDCNIS 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547206|ref|XP_003542007.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Glycine max]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/312 (70%), Positives = 255/312 (81%), Gaps = 2/312 (0%)

Query: 3   QFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 62
            FDLRS+SAT+LF CSS   N+KQ ++ + LN+IVID RNP YFA+GGSDEYARVYD+RK
Sbjct: 177 HFDLRSNSATKLFCCSSSIGNNKQTLSKVGLNSIVIDCRNPYYFAIGGSDEYARVYDMRK 236

Query: 63  CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGP 122
           C W S  +SD PV+TFCPRHLIG NN+HITGLAYS+  ELL+SYNDEL+YLFEKNM    
Sbjct: 237 CQWDSARNSDRPVNTFCPRHLIGSNNVHITGLAYSSFGELLVSYNDELIYLFEKNMHSDS 296

Query: 123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182
           SP S + ED +   E QVYSGHRN+QT+KGVNFFGPNDEYV+SGSDCGH+FIWKKK  KL
Sbjct: 297 SPSSATSEDSKNIHEAQVYSGHRNAQTIKGVNFFGPNDEYVLSGSDCGHIFIWKKKEAKL 356

Query: 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR 242
           VRLMVGD+HVVNQ E HPHIP+ ATCGIEK VK+WAP+  D PPLP N ++IM+ N+QGR
Sbjct: 357 VRLMVGDQHVVNQHEAHPHIPILATCGIEKNVKIWAPLGNDIPPLPGNVKEIMETNRQGR 416

Query: 243 EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEG 302
           ED S++TLTPDVIMHVLRLQRRQTLAY ERR+N AD  SDEE+ E YLLGF D DASSE 
Sbjct: 417 EDRSQVTLTPDVIMHVLRLQRRQTLAYIERRHNRADIVSDEEDAEGYLLGFLDGDASSEE 476

Query: 303 G--GNQRECIIS 312
              GN R+C IS
Sbjct: 477 DYPGNSRDCNIS 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453735|ref|XP_003597148.1| DDB1- and CUL4-associated factor [Medicago truncatula] gi|355486196|gb|AES67399.1| DDB1- and CUL4-associated factor [Medicago truncatula]

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/312 (68%), Positives = 247/312 (79%), Gaps = 2/312 (0%)

Query: 3   QFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 62
            FDLRS+SAT+LF CSS   N KQP   I LN+IVID R P YF+VGGSDEYARVYDIRK
Sbjct: 167 HFDLRSNSATKLFCCSSTKGNKKQPPGKIGLNSIVIDSRIPYYFSVGGSDEYARVYDIRK 226

Query: 63  CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGP 122
           CHW +   SD PV+TFCP HLIG  N+HITGLAYS +SELL+SYND+L+YLFEKN     
Sbjct: 227 CHWAASKDSDQPVNTFCPHHLIGSKNVHITGLAYSKSSELLVSYNDDLIYLFEKNSSFDS 286

Query: 123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182
            P S + ED +  +E QVYSGHRN++TVKGV+FFGPNDEYV+SGSDCGH+FIW KK  KL
Sbjct: 287 LPSSAACEDPKNLQETQVYSGHRNAKTVKGVSFFGPNDEYVLSGSDCGHIFIWSKKEAKL 346

Query: 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR 242
           VRLMVGDRHVVNQLE HPHIP  ATCGIEK VK+WAP+ +D PPLP N ++I++AN+QGR
Sbjct: 347 VRLMVGDRHVVNQLEAHPHIPFLATCGIEKNVKIWAPLGSDTPPLPSNVKEIIEANRQGR 406

Query: 243 EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEG 302
           ED  ++TL PDVIMHVLRLQRRQTLAY ERR+N+AD  SD+E+ E Y LG  D D SSE 
Sbjct: 407 EDRLQVTLAPDVIMHVLRLQRRQTLAYTERRHNSADIVSDDEDAEDYFLGLLDGDVSSEE 466

Query: 303 G--GNQRECIIS 312
              GN R+C IS
Sbjct: 467 DSLGNSRDCNIS 478

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113205238|gb|ABI34308.1| WD domain containing protein, putative [Solanum demissum]

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/314 (68%), Positives = 253/314 (80%), Gaps = 10/314 (3%)

Query: 3   QFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 62
            +DLRS+S+++LF CSSF+EN+KQ   SIRLN IVIDPRNPNYFAVGGSDEYARVYDIR 
Sbjct: 147 HYDLRSNSSSKLFRCSSFTENNKQS-GSIRLNGIVIDPRNPNYFAVGGSDEYARVYDIRM 205

Query: 63  CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGP 122
               +  SSD  +DTFCP HLI  +++HIT LAYSNTSELL+SYNDEL+YLF+KNMGLGP
Sbjct: 206 YQLDARTSSDRSIDTFCPHHLIKTHDVHITALAYSNTSELLVSYNDELIYLFQKNMGLGP 265

Query: 123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182
            PLSL  EDL K E+PQVYSGHRNSQTVKGV+FFGP DEYV++GSDCGH+FIWKKK  KL
Sbjct: 266 VPLSLQGEDLNKLEKPQVYSGHRNSQTVKGVSFFGPTDEYVLTGSDCGHIFIWKKKDAKL 325

Query: 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR 242
           VR+MVGDRH+VNQL+PHP IP+ ATCGIEKT+KLWAP   D  PLP + ++IM+AN++GR
Sbjct: 326 VRVMVGDRHIVNQLKPHPCIPVLATCGIEKTIKLWAPTSKDVTPLPPDVQEIMEANRRGR 385

Query: 243 EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEE----GETYLLGFSDSDA 298
           EDHSR+TLTPD+IMHVLRL RRQ LAY ERR N    +SD+++    G  Y+LGFSD + 
Sbjct: 386 EDHSRVTLTPDMIMHVLRLHRRQALAYIERRENLGYVDSDDDDDDIGGGAYVLGFSDGEE 445

Query: 299 SSEGGGNQRECIIS 312
                G   EC IS
Sbjct: 446 -----GENSECSIS 454

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463637|ref|XP_004149538.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Cucumis sativus] gi|449532795|ref|XP_004173364.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Cucumis sativus]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/314 (64%), Positives = 245/314 (78%), Gaps = 5/314 (1%)

Query: 3   QFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 62
            FDLR+ SA +LFYC++F+E S+ P NSI LNAI IDPRNPN+FA+GGSDEYAR+YD+R 
Sbjct: 168 HFDLRNTSARKLFYCTAFAERSRHPPNSIELNAIAIDPRNPNFFALGGSDEYARLYDLRN 227

Query: 63  CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGP 122
           C      SS+  VDTFCP HL   NN HITGL +SN+SELLI+Y+DEL+YLF+KNMGLGP
Sbjct: 228 CRG-DVTSSNRVVDTFCPHHLTQTNNFHITGLVFSNSSELLITYSDELIYLFQKNMGLGP 286

Query: 123 SPLSLSPEDLQKR-EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 181
           SPL++S E+L +  + P V+SGHRNS TVKGVNFFGPN EY++SGSDCGH++IWKKKG  
Sbjct: 287 SPLTVSSENLLRELKRPHVFSGHRNSATVKGVNFFGPNAEYIVSGSDCGHIYIWKKKGAL 346

Query: 182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQG 241
           LV+LM+GD  VVN +EPHPH+P+ ATCGIE  VK+W PM +D PPLPD+ E+IM++NKQG
Sbjct: 347 LVKLMLGDHDVVNHIEPHPHLPILATCGIENNVKIWTPMASDVPPLPDDMEQIMESNKQG 406

Query: 242 REDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESD-EEEGETYLLGFSDSDASS 300
           RE+HSR+TLTPDVI+HVLRLQRRQT A+ ERRYN AD  SD E E E Y     D   S 
Sbjct: 407 REEHSRVTLTPDVIVHVLRLQRRQTSAFTERRYNPADNNSDGENEWEAYNQEALDGSVSF 466

Query: 301 EGGGNQR--ECIIS 312
           E    +   EC IS
Sbjct: 467 EDDSTEHASECNIS 480

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815706|ref|XP_002875736.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297321574|gb|EFH51995.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/318 (62%), Positives = 242/318 (76%), Gaps = 11/318 (3%)

Query: 1   MWQFDLRSDSATRLFYCSSFSENSKQPMNS--IRLNAIVIDPRNPNYFAVGGSDEYARVY 58
           +  FD+RS+SAT + Y S F++  ++  +S  IRLN+I IDPRN  Y AVGGSDEYARVY
Sbjct: 169 VQHFDIRSNSATMVLYSSPFTQGCRRHHSSSRIRLNSIAIDPRNSYYLAVGGSDEYARVY 228

Query: 59  DIRKCHWYSPISS----DTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF 114
           D R+    +P+      D PV+TFCPRHL   N++H+TGLAYS   ELL+SYNDEL+YLF
Sbjct: 229 DTRRGQL-APVCRHVLPDAPVNTFCPRHLRETNSVHVTGLAYSKAGELLVSYNDELIYLF 287

Query: 115 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 174
           EKNMG GPSP+S+SPE LQ+ EEPQVY+GHRN+QTVKGV FFGPNDEYV SGSDCGH+FI
Sbjct: 288 EKNMGYGPSPVSISPEKLQEMEEPQVYTGHRNAQTVKGVKFFGPNDEYVTSGSDCGHIFI 347

Query: 175 WKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKI 234
           WKKKGGKLVR MVGDR VVNQLE HPHIP+ A+CGIEK+VKLW PM  D   LP+  EK+
Sbjct: 348 WKKKGGKLVRAMVGDRRVVNQLESHPHIPLLASCGIEKSVKLWTPMSNDVFSLPEKIEKV 407

Query: 235 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFS 294
           M+ N+ GRED SR+TLTPDVIMHVLRLQRRQT A+ ERRY + D  SD+     ++    
Sbjct: 408 MELNRVGREDQSRVTLTPDVIMHVLRLQRRQTSAFTERRYVSTDIGSDDGNDAHFIASLV 467

Query: 295 DSDASSEGGGNQRECIIS 312
           D+D  S    ++REC +S
Sbjct: 468 DNDDES----SERECTVS 481

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231191|ref|NP_190148.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|6996265|emb|CAB75491.1| putative protein [Arabidopsis thaliana] gi|26450489|dbj|BAC42358.1| unknown protein [Arabidopsis thaliana] gi|28973383|gb|AAO64016.1| unknown protein [Arabidopsis thaliana] gi|332644530|gb|AEE78051.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/318 (62%), Positives = 239/318 (75%), Gaps = 11/318 (3%)

Query: 1   MWQFDLRSDSATRLFYCSSFSENSKQPMNS--IRLNAIVIDPRNPNYFAVGGSDEYARVY 58
           +  FD+RS+SAT + Y S F++  ++  +S  IRLN+I IDPRN  Y AVGGSDEYARVY
Sbjct: 169 VQHFDIRSNSATMVLYSSPFTQGCRRHHSSSRIRLNSIAIDPRNSYYLAVGGSDEYARVY 228

Query: 59  DIRKCHWYSPISS----DTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF 114
           D R+    +P+      D PV+TFCPRHL   N++HITGLAYS   ELL+SYNDEL+YLF
Sbjct: 229 DTRRVQL-APVCRHVLPDAPVNTFCPRHLRETNSVHITGLAYSKAGELLVSYNDELIYLF 287

Query: 115 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 174
           EKNMG G SP+S+SPE LQ+ EEPQVY GHRN+QTVKGVNFFGPNDEYV SGSDCGH+FI
Sbjct: 288 EKNMGYGSSPVSVSPEKLQEMEEPQVYIGHRNAQTVKGVNFFGPNDEYVTSGSDCGHIFI 347

Query: 175 WKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKI 234
           WKKKGGKLVR MVGDR VVNQLE HPHIP+ A+CGIEK+VKLW PM  D   LP+  +K+
Sbjct: 348 WKKKGGKLVRAMVGDRRVVNQLESHPHIPLLASCGIEKSVKLWTPMSNDVLSLPEKIDKV 407

Query: 235 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFS 294
           M+ N+ GRED SR+TLTPDVIMHVLRLQRRQT A+ ERRY + D  SDE     ++    
Sbjct: 408 MELNRVGREDQSRVTLTPDVIMHVLRLQRRQTSAFTERRYVSTDIGSDEGNDARFIASLV 467

Query: 295 DSDASSEGGGNQRECIIS 312
            +D  S    + REC +S
Sbjct: 468 ANDDES----SDRECTVS 481

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185746|ref|NP_001190014.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332644531|gb|AEE78052.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/318 (62%), Positives = 239/318 (75%), Gaps = 11/318 (3%)

Query: 1   MWQFDLRSDSATRLFYCSSFSENSKQPMNS--IRLNAIVIDPRNPNYFAVGGSDEYARVY 58
           +  FD+RS+SAT + Y S F++  ++  +S  IRLN+I IDPRN  Y AVGGSDEYARVY
Sbjct: 203 VQHFDIRSNSATMVLYSSPFTQGCRRHHSSSRIRLNSIAIDPRNSYYLAVGGSDEYARVY 262

Query: 59  DIRKCHWYSPISS----DTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF 114
           D R+    +P+      D PV+TFCPRHL   N++HITGLAYS   ELL+SYNDEL+YLF
Sbjct: 263 DTRRVQL-APVCRHVLPDAPVNTFCPRHLRETNSVHITGLAYSKAGELLVSYNDELIYLF 321

Query: 115 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 174
           EKNMG G SP+S+SPE LQ+ EEPQVY GHRN+QTVKGVNFFGPNDEYV SGSDCGH+FI
Sbjct: 322 EKNMGYGSSPVSVSPEKLQEMEEPQVYIGHRNAQTVKGVNFFGPNDEYVTSGSDCGHIFI 381

Query: 175 WKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKI 234
           WKKKGGKLVR MVGDR VVNQLE HPHIP+ A+CGIEK+VKLW PM  D   LP+  +K+
Sbjct: 382 WKKKGGKLVRAMVGDRRVVNQLESHPHIPLLASCGIEKSVKLWTPMSNDVLSLPEKIDKV 441

Query: 235 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFS 294
           M+ N+ GRED SR+TLTPDVIMHVLRLQRRQT A+ ERRY + D  SDE     ++    
Sbjct: 442 MELNRVGREDQSRVTLTPDVIMHVLRLQRRQTSAFTERRYVSTDIGSDEGNDARFIASLV 501

Query: 295 DSDASSEGGGNQRECIIS 312
            +D  S    + REC +S
Sbjct: 502 ANDDES----SDRECTVS 515

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
TAIR|locus:2132796	496	AT4G35140 "AT4G35140" [Arabido	0.971	0.610	0.440	6.7e-65
TAIR|locus:2121164	471	AT4G38480 "AT4G38480" [Arabido	0.708	0.469	0.523	1.9e-60
UNIPROTKB|Q5R448	597	DCAF8 "DDB1- and CUL4-associat	0.842	0.440	0.397	7.9e-46
MGI|MGI:91860	591	Dcaf8 "DDB1 and CUL4 associate	0.842	0.445	0.401	1.6e-45
RGD|1308513	591	Dcaf8 "DDB1 and CUL4 associate	0.842	0.445	0.397	7.1e-45
UNIPROTKB|Q5TAQ9	597	DCAF8 "DDB1- and CUL4-associat	0.842	0.440	0.391	9.1e-45
UNIPROTKB|G3V3G9	751	DCAF8 "DDB1- and CUL4-associat	0.842	0.350	0.391	3e-44
POMBASE|SPBC609.03	809	iqw1 "WD repeat protein, Iqw1"	0.432	0.166	0.385	2.9e-29
UNIPROTKB|F1MBJ1	877	DCAF6 "Uncharacterized protein	0.435	0.155	0.402	2e-28
MGI|MGI:1921356	876	Dcaf6 "DDB1 and CUL4 associate	0.349	0.124	0.424	2.6e-28

TAIR|locus:2132796 AT4G35140 "AT4G35140" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 145/329 (44%), Positives = 197/329 (59%)

Query:     3 QFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 62
             +FDLR+++ T LF C S     +  M++I+LNAI IDPRN N FAVGG +EYAR+YDIR+
Sbjct:   175 RFDLRTEAPTELFTCRSVDPRRRN-MDAIQLNAIAIDPRNSNLFAVGGMEEYARLYDIRR 233

Query:    63 CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGP 122
                          D FCP HLIG  ++ ITGLA+S  SELL+SYNDE +YLF   MGLG 
Sbjct:   234 FQGEGLNGFTRAADHFCPPHLIGNEDVGITGLAFSEQSELLVSYNDEFIYLFTPGMGLGS 293

Query:   123 SPL---------------SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 167
             +P+               S SP+D  +     VY GH+N +TVKGVNFFGP  EYV+SGS
Sbjct:   294 NPIPSSPISKSPVSKSESSSSPKDENEHSVSLVYKGHKNCETVKGVNFFGPRSEYVVSGS 353

Query:   168 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL 227
             DCG +FIW+KKGG+L+R+M  DRHVVN +EPHPHIP+ A+ GIE  +K+W     +   L
Sbjct:   354 DCGRIFIWRKKGGELIRVMEADRHVVNCIEPHPHIPVLASSGIESDIKVWTSKAAERATL 413

Query:   228 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGE 287
             P+N E + K   +G     R++   +++  +  LQ R + +  ER   ++   +   E  
Sbjct:   414 PENIE-LRKRTPRGWM--YRVSSPHELLAQLFSLQNRSSSS-PEREGESSS--ATGRELL 467

Query:   288 TYLLGFSD-SD---ASSEGGGNQRECIIS 312
               +L F+D SD   A+ +  GN  E   S
Sbjct:   468 DLILTFNDQSDDENATDDDDGNSHEDFFS 496

GO:0000166 "nucleotide binding" evidence=ISS

TAIR|locus:2121164 AT4G38480 "AT4G38480" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 122/233 (52%), Positives = 156/233 (66%)

Query:     4 FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC 63
             FDLR+  AT LF C     N       + L+AI +DPRNP   AV G DEYARVYDIR  
Sbjct:   172 FDLRTRVATNLFTCKEAKFNLV-----VYLHAIAVDPRNPGLLAVAGMDEYARVYDIRSY 226

Query:    64 H---WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGL 120
                 WY+      P+D FCP HLIG +++ ITGLA+S+ SELL SY+DE +YLF  +MGL
Sbjct:   227 RSEGWYN---FTQPIDHFCPGHLIGDDHVGITGLAFSDQSELLASYSDEFIYLFTPDMGL 283

Query:   121 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 180
             GP+P   S +  ++R  PQVY  H N +TVKGVNFFGP  EYV+SGSDCG +FIW+KK G
Sbjct:   284 GPTPYPSSTKT-EERMTPQVYKEHTNRETVKGVNFFGPKCEYVVSGSDCGRIFIWRKKDG 342

Query:   181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEK 233
             +L+R M  DRHVVN +E HPH+P+  + GI+  +K+W P  T+ P  P NA++
Sbjct:   343 ELLRAMEADRHVVNCIESHPHMPLMCSSGIDTDIKIWTPGGTEKPLSPGNAKQ 395

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q5R448 DCAF8 "DDB1- and CUL4-associated factor 8" [Pongo abelii (taxid:9601)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 119/299 (39%), Positives = 168/299 (56%)

Query:    24 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 83
             +K+    + L  I ++P N + FAVGG D++ R+YD RK        ++  +  FCP HL
Sbjct:   325 TKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI---DENENNGVLKKFCPHHL 381

Query:    84 I-GKNNIHITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY 141
             + G++  +IT L YS+  +ELL SYNDE +YLF  +   G   +        KR     Y
Sbjct:   382 VNGESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYV--------KR-----Y 428

Query:   142 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHP 200
              GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHP
Sbjct:   429 KGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHP 488

Query:   201 HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS--RITLTPD----V 254
             H+P+ AT G++  VK+WAP       L    + ++K NK+ R++ S  R  L        
Sbjct:   489 HLPVLATSGLDHDVKIWAPTAEASTELT-GLKDVIKKNKRERDEDSLHRTDLFDSHMLWF 547

Query:   255 IMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR-ECIIS 312
             +MH LR QRR    +RE    A D +SDE          S SD S E  G  R +C+ S
Sbjct:   548 LMHHLR-QRRHHRRWREPGVGATDADSDESP--------SSSDTSDEEEGPDRVQCMPS 597

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

MGI|MGI:91860 Dcaf8 "DDB1 and CUL4 associated factor 8" [Mus musculus (taxid:10090)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 120/299 (40%), Positives = 167/299 (55%)

Query:    24 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 83
             +K+    + L  I ++P N + FAVGG D+Y R+YD RK        ++  +  FCP HL
Sbjct:   319 TKEKEKKVGLYTIYVNPANTHQFAVGGRDQYVRIYDQRKI---DENENNGVLKKFCPHHL 375

Query:    84 IG-KNNIHITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY 141
             +  ++  +IT L YS+  +ELL SYNDE +YLF  +   G   +        KR     Y
Sbjct:   376 VNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYI--------KR-----Y 422

Query:   142 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHP 200
              GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHP
Sbjct:   423 KGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHP 482

Query:   201 HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR-EDHSRITLTPD-----V 254
             H+P+ AT G++  VK+WAP       L    ++++K NK+ R ED    T   D      
Sbjct:   483 HLPVLATSGLDHDVKIWAPTAEASTELT-GLKEVIKKNKRERDEDSLHHTDLFDSHMLWF 541

Query:   255 IMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR-ECIIS 312
             +MH LR QRR    +RE    A D +SDE          S SD S E  G  R +C+ S
Sbjct:   542 LMHHLR-QRRHHRRWREPGVGATDADSDESP--------SSSDTSDEEEGPDRVQCMPS 591

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

RGD|1308513 Dcaf8 "DDB1 and CUL4 associated factor 8" [Rattus norvegicus (taxid:10116)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 119/299 (39%), Positives = 166/299 (55%)

Query:    24 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 83
             +K+    + L  I ++P N + FAVGG D++ R+YD RK        ++  +  FCP HL
Sbjct:   319 TKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI---DENENNGVLKKFCPHHL 375

Query:    84 IG-KNNIHITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY 141
             +  ++  +IT L YS+  +ELL SYNDE +YLF  +   G   +        KR     Y
Sbjct:   376 VNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYI--------KR-----Y 422

Query:   142 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHP 200
              GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHP
Sbjct:   423 KGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHP 482

Query:   201 HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR-EDHSRITLTPD-----V 254
             H+P+ AT G++  VK+WAP       L    + ++K NK+ R ED    T   D      
Sbjct:   483 HLPVLATSGLDHDVKIWAPTAEASTELT-GLKDVIKKNKRERDEDSLHHTDLFDSHMLWF 541

Query:   255 IMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR-ECIIS 312
             +MH LR QRR    +RE    A D +SDE          S SD S E  G  R +C+ S
Sbjct:   542 LMHHLR-QRRHHRRWREPGVGATDADSDESP--------SSSDTSDEEEGPDRVQCMPS 591

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO;ISS

UNIPROTKB|Q5TAQ9 DCAF8 "DDB1- and CUL4-associated factor 8" [Homo sapiens (taxid:9606)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 117/299 (39%), Positives = 167/299 (55%)

Query:    24 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 83
             +K+    + L  I ++P N + FAVGG D++ R+YD RK        ++  +  FCP HL
Sbjct:   325 TKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI---DENENNGVLKKFCPHHL 381

Query:    84 IG-KNNIHITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY 141
             +  ++  +IT L YS+  +ELL SYNDE +YLF  +   G   +        KR     Y
Sbjct:   382 VNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYV--------KR-----Y 428

Query:   142 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHP 200
              GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHP
Sbjct:   429 KGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHP 488

Query:   201 HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS--RITLTPD----V 254
             H+P+ AT G++  VK+WAP       L    + ++K NK+ R++ S  +  L        
Sbjct:   489 HLPVLATSGLDHDVKIWAPTAEASTELT-GLKDVIKKNKRERDEDSLHQTDLFDSHMLWF 547

Query:   255 IMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR-ECIIS 312
             +MH LR QRR    +RE    A D +SDE          S SD S E  G  R +C+ S
Sbjct:   548 LMHHLR-QRRHHRRWREPGVGATDADSDESP--------SSSDTSDEEEGPDRVQCMPS 597

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|G3V3G9 DCAF8 "DDB1- and CUL4-associated factor 8" [Homo sapiens (taxid:9606)]

 Score = 471 (170.9 bits), Expect = 3.0e-44, P = 3.0e-44
 Identities = 117/299 (39%), Positives = 167/299 (55%)

Query:    24 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 83
             +K+    + L  I ++P N + FAVGG D++ R+YD RK        ++  +  FCP HL
Sbjct:   479 TKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI---DENENNGVLKKFCPHHL 535

Query:    84 IG-KNNIHITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY 141
             +  ++  +IT L YS+  +ELL SYNDE +YLF  +   G   +        KR     Y
Sbjct:   536 VNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYV--------KR-----Y 582

Query:   142 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHP 200
              GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHP
Sbjct:   583 KGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHP 642

Query:   201 HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS--RITLTPD----V 254
             H+P+ AT G++  VK+WAP       L    + ++K NK+ R++ S  +  L        
Sbjct:   643 HLPVLATSGLDHDVKIWAPTAEASTELT-GLKDVIKKNKRERDEDSLHQTDLFDSHMLWF 701

Query:   255 IMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR-ECIIS 312
             +MH LR QRR    +RE    A D +SDE          S SD S E  G  R +C+ S
Sbjct:   702 LMHHLR-QRRHHRRWREPGVGATDADSDESP--------SSSDTSDEEEGPDRVQCMPS 751

GO:0005777 "peroxisome" evidence=IEA

POMBASE|SPBC609.03 iqw1 "WD repeat protein, Iqw1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 237 (88.5 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
 Identities = 59/153 (38%), Positives = 83/153 (54%)

Query:   121 GPSPLSLSPEDLQKREEPQV--------YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL 172
             GP+ LSL  +  +K  EP V        Y GH N +++K VNF+G NDEYVMSGSD G  
Sbjct:   637 GPTLLSLRMKK-RKAVEPNVPVNTHVKSYYGHCNVESIKNVNFYGQNDEYVMSGSDDGRF 695

Query:   173 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL----- 227
             FIW K    ++ ++ GD   VN +E HP  P  A  GI+ TVK++    T  PP      
Sbjct:   696 FIWDKLNASILAIIHGDSEAVNVIEGHPRCPTLAVSGIDSTVKIFNTENT--PPSGCSRN 753

Query:   228 -PDNAEKIMKANKQGREDHSRIT-LTPDVIMHV 258
                N+ KI+  N+  R+  SR + +T  ++ H+
Sbjct:   754 HTSNSYKIIATNEMNRQQGSRDSYITSRMLSHL 786

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0043234 "protein complex" evidence=NAS

UNIPROTKB|F1MBJ1 DCAF6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 238 (88.8 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 60/149 (40%), Positives = 86/149 (57%)

Query:   140 VYSGHRNSQT-VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 198
             VY GHRNS+T +K  NF+G N  +VMSGSDCGH+FIW +   + + L+  D HVVN L+P
Sbjct:   729 VYKGHRNSRTMIKEANFWGAN--FVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQP 786

Query:   199 HPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT-PDVIMH 257
             HP  P+ A+ GI+  +K+W+P+          A++++  N+   E+ +R T+T P   M 
Sbjct:   787 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE-TRNTITVPASFM- 844

Query:   258 VLRLQRRQTLAYRERRYNAADFESDEEEG 286
              LR+     LA       A   ESD  EG
Sbjct:   845 -LRM-----LASLNH-IRADRLESDRSEG 866

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1921356 Dcaf6 "DDB1 and CUL4 associated factor 6" [Mus musculus (taxid:10090)]

 Score = 236 (88.1 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
 Identities = 48/113 (42%), Positives = 73/113 (64%)

Query:   140 VYSGHRNSQT-VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 198
             VY GHRNS+T +K  NF+G N  +VMSGSDCGH+FIW +   + + L+  D HVVN L+P
Sbjct:   728 VYKGHRNSRTMIKEANFWGAN--FVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQP 785

Query:   199 HPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT 251
             HP  P+ A+ GI+  +K+W+P+          A++++  N+   E+ +R T+T
Sbjct:   786 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE-TRNTIT 837

GO:0005634 "nucleus" evidence=ISO

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-05

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 35/175 (20%)

Query: 44  NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 103
            Y A G SD+  R++D+                  C R L G  + +++ +A+S    +L
Sbjct: 64  TYLASGSSDKTIRLWDLETGE--------------CVRTLTGHTS-YVSSVAFSPDGRIL 108

Query: 104 I-SYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 162
             S  D+ + ++                D++  +      GH +   V  V  F P+  +
Sbjct: 109 SSSSRDKTIKVW----------------DVETGKCLTTLRGHTDW--VNSV-AFSPDGTF 149

Query: 163 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 217
           V S S  G + +W  + GK V  + G    VN +   P      +   + T+KLW
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 48/192 (25%)

Query: 34  NAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH-- 90
           N++   P     F    S D   +++D+R             V T            H  
Sbjct: 139 NSVAFSP--DGTFVASSSQDGTIKLWDLRTGK---------CVATL---------TGHTG 178

Query: 91  -ITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 148
            +  +A+S    +LL S +D  + L+                DL   +      GH N  
Sbjct: 179 EVNSVAFSPDGEKLLSSSSDGTIKLW----------------DLSTGKCLGTLRGHEN-- 220

Query: 149 TVKGVNF--FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 206
              GVN   F P+   + SGS+ G + +W  + G+ V+ + G  + V  L   P     A
Sbjct: 221 ---GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277

Query: 207 TCGIEKTVKLWA 218
           +   + T+++W 
Sbjct: 278 SGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 20/128 (15%)

Query: 91  ITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 149
           +T +A+S   +LL +   D  + ++                DL+  E  +   GH  +  
Sbjct: 12  VTCVAFSPDGKLLATGSGDGTIKVW----------------DLETGELLRTLKGH--TGP 53

Query: 150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 209
           V+ V     +  Y+ SGS    + +W  + G+ VR + G    V+ +   P   + ++  
Sbjct: 54  VRDVAAS-ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 210 IEKTVKLW 217
            +KT+K+W
Sbjct: 113 RDKTIKVW 120

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 33/176 (18%)

Query: 42  NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE 101
           +    A G  D   +V+D         + +   + T    H     ++     A ++ + 
Sbjct: 20  DGKLLATGSGDGTIKVWD---------LETGELLRTLKG-HTGPVRDV----AASADGTY 65

Query: 102 LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 161
           L    +D+ + L+                DL+  E  +  +GH  +  V  V F  P+  
Sbjct: 66  LASGSSDKTIRLW----------------DLETGECVRTLTGH--TSYVSSVAFS-PDGR 106

Query: 162 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 217
            + S S    + +W  + GK +  + G    VN +   P     A+   + T+KLW
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 48/213 (22%), Positives = 82/213 (38%), Gaps = 37/213 (17%)

Query: 8   SDSATRLF-YCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY 66
           SD   RL+   SS S       +S  + ++   P +    A G SD   R++D+      
Sbjct: 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLL 319

Query: 67  SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--YNDELVYLFEKNMGLGPSP 124
           S ++                +   ++ L++S    LL+S   +D  + L+          
Sbjct: 320 SSLTLKG-------------HEGPVSSLSFSPDGSLLVSGGSDDGTIRLW---------- 356

Query: 125 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184
                 DL+  +  +   GH N  +V     F P+   V SGS  G + +W    G L+R
Sbjct: 357 ------DLRTGKPLKTLEGHSNVLSVS----FSPDGRVVSSGSTDGTVRLWDLSTGSLLR 406

Query: 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 217
            + G    V  L+  P     A+   + T++LW
Sbjct: 407 NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.9 bits (102), Expect = 6e-05
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 37/189 (19%)

Query: 32  RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI 91
            + ++   P      +    D   +++D+R     S ++  T                 +
Sbjct: 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP---------------V 201

Query: 92  TGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 149
           + LA+S    LLI+   +D  + L++ + G               +      SGH +S  
Sbjct: 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTG---------------KLLRSTLSGHSDSV- 245

Query: 150 VKGVNFFGPNDEYVMSGSDCGHLFIWK-KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC 208
              V+ F P+   + SGS  G + +W  +    L+R + G    V  +   P   + A+ 
Sbjct: 246 ---VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302

Query: 209 GIEKTVKLW 217
             + TV+LW
Sbjct: 303 SSDGTVRLW 311

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.5 bits (101), Expect = 9e-05
 Identities = 43/224 (19%), Positives = 84/224 (37%), Gaps = 14/224 (6%)

Query: 7   RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK---C 63
             D   +L+   +    S    ++  ++++   P      A G SD   R++D+      
Sbjct: 175 SLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234

Query: 64  HWYSPISSDTPVDTFCPRHLI-----GKNNIHITGLAYSNTSELLISYNDELVY--LF-- 114
                  SD+ V +F P   +         I +  L  S++    +S +   V    F  
Sbjct: 235 RSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294

Query: 115 -EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF 173
             K +  G S  ++   DL+  +     +   +   V  ++F       V  GSD G + 
Sbjct: 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354

Query: 174 IWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 217
           +W  + GK ++ + G    V  +   P   + ++   + TV+LW
Sbjct: 355 LWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLW 397

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.98
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.98
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.98
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
PTZ00420	568	coronin; Provisional	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.92
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.92
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.92
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.9
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG0643	327	consensus Translation initiation factor 3, subunit	99.9
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.89
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.89
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.87
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG1334	559	consensus WD40 repeat protein [General function pr	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.86
KOG0646	476	consensus WD40 repeat protein [General function pr	99.85
KOG0641	350	consensus WD40 repeat protein [General function pr	99.85
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG0639	705	consensus Transducin-like enhancer of split protei	99.84
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.84
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.83
KOG1539	910	consensus WD repeat protein [General function pred	99.83
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.83
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.82
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.82
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.82
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.82
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.81
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.81
KOG1539	910	consensus WD repeat protein [General function pred	99.81
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.81
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.81
KOG1273	405	consensus WD40 repeat protein [General function pr	99.81
KOG4328	498	consensus WD40 protein [Function unknown]	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
KOG2055	514	consensus WD40 repeat protein [General function pr	99.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.79
KOG2055	514	consensus WD40 repeat protein [General function pr	99.79
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.79
KOG2096	420	consensus WD40 repeat protein [General function pr	99.79
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.78
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.78
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.78
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.78
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.77
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.77
KOG2048	691	consensus WD40 repeat protein [General function pr	99.77
KOG1188	376	consensus WD40 repeat protein [General function pr	99.75
KOG0649	325	consensus WD40 repeat protein [General function pr	99.75
KOG1188	376	consensus WD40 repeat protein [General function pr	99.74
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.73
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.72
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.72
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.72
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.7
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.69
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.69
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.68
COG2319	466	FOG: WD40 repeat [General function prediction only	99.68
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.67
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.67
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.66
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.66
KOG1310	758	consensus WD40 repeat protein [General function pr	99.64
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.64
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.64
PRK11028	330	6-phosphogluconolactonase; Provisional	99.64
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.64
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.63
KOG2139	445	consensus WD40 repeat protein [General function pr	99.62
COG2319	466	FOG: WD40 repeat [General function prediction only	99.62
KOG4227	609	consensus WD40 repeat protein [General function pr	99.61
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.6
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.6
KOG0649	325	consensus WD40 repeat protein [General function pr	99.6
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.59
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
KOG2139	445	consensus WD40 repeat protein [General function pr	99.58
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.57
PRK04922	433	tolB translocation protein TolB; Provisional	99.57
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.56
PRK05137	435	tolB translocation protein TolB; Provisional	99.56
KOG1963	792	consensus WD40 repeat protein [General function pr	99.55
PRK11028	330	6-phosphogluconolactonase; Provisional	99.54
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.54
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.53
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.53
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.53
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.52
KOG4227	609	consensus WD40 repeat protein [General function pr	99.5
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.5
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.5
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.49
PRK02889	427	tolB translocation protein TolB; Provisional	99.49
PRK01742	429	tolB translocation protein TolB; Provisional	99.49
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.48
PRK03629	429	tolB translocation protein TolB; Provisional	99.47
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.46
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.46
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.46
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.42
PRK04922	433	tolB translocation protein TolB; Provisional	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.4
PRK05137	435	tolB translocation protein TolB; Provisional	99.4
KOG1963	792	consensus WD40 repeat protein [General function pr	99.4
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.38
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.38
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.38
KOG1310	758	consensus WD40 repeat protein [General function pr	99.38
KOG4547	541	consensus WD40 repeat-containing protein [General	99.37
PRK02889	427	tolB translocation protein TolB; Provisional	99.35
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.35
KOG2321	703	consensus WD40 repeat protein [General function pr	99.34
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.33
PRK04792	448	tolB translocation protein TolB; Provisional	99.33
KOG1334	559	consensus WD40 repeat protein [General function pr	99.32
PRK01029	428	tolB translocation protein TolB; Provisional	99.3
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.3
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.3
KOG4547	541	consensus WD40 repeat-containing protein [General	99.25
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.24
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.22
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.19
PRK01029	428	tolB translocation protein TolB; Provisional	99.19
PRK04792	448	tolB translocation protein TolB; Provisional	99.16
KOG2315	566	consensus Predicted translation initiation factor	99.14
PRK00178	430	tolB translocation protein TolB; Provisional	99.13
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.13
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.12
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.12
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.11
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.11
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.1
COG4946	668	Uncharacterized protein related to the periplasmic	99.07
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.06
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.05
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.04
KOG2315	566	consensus Predicted translation initiation factor	99.03
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.02
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.01
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.01
PRK04043	419	tolB translocation protein TolB; Provisional	98.99
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.97
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.95
KOG2695	425	consensus WD40 repeat protein [General function pr	98.91
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.91
PRK04043	419	tolB translocation protein TolB; Provisional	98.9
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.87
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.87
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.87
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.83
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.82
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.81
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.81
KOG2695	425	consensus WD40 repeat protein [General function pr	98.81
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.8
KOG2314	698	consensus Translation initiation factor 3, subunit	98.74
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.74
COG4946	668	Uncharacterized protein related to the periplasmic	98.74
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.65
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.65
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.64
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.62
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.59
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.57
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.55
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.54
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.54
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.52
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.49
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.48
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.45
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.45
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.43
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.42
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.41
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.41
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.4
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.38
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.38
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.38
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.34
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.32
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.31
KOG2314	698	consensus Translation initiation factor 3, subunit	98.3
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.3
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.29
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.29
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.28
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.27
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.18
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.12
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.08
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.01
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.0
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.99
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.97
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.93
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.93
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.93
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.87
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.82
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.82
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.81
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.78
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.78
KOG3621	726	consensus WD40 repeat-containing protein [General	97.78
KOG3621	726	consensus WD40 repeat-containing protein [General	97.75
PRK02888	635	nitrous-oxide reductase; Validated	97.67
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.66
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.66
KOG2444	238	consensus WD40 repeat protein [General function pr	97.64
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.62
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.58
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.54
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.47
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.43
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.43
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.39
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.35
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.33
PRK02888	635	nitrous-oxide reductase; Validated	97.31
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.3
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.3
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.29
COG3391	381	Uncharacterized conserved protein [Function unknow	97.25
KOG2395	644	consensus Protein involved in vacuole import and d	97.22
PRK13616	591	lipoprotein LpqB; Provisional	97.2
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.18
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.16
COG3391	381	Uncharacterized conserved protein [Function unknow	97.14
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.13
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.13
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.11
PHA02713	557	hypothetical protein; Provisional	97.07
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.01
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.97
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.88
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.82
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.64
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.63
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.49
PRK13616	591	lipoprotein LpqB; Provisional	96.45
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.43
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.43
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.42
KOG2444	238	consensus WD40 repeat protein [General function pr	96.39
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.36
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.34
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.31
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.3
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.2
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.2
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.09
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.03
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.0
PHA02713	557	hypothetical protein; Provisional	95.95
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.93
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.86
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.84
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.84
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.83
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.81
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.81
KOG2395	644	consensus Protein involved in vacuole import and d	95.64
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.61
PHA03098	534	kelch-like protein; Provisional	95.58
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.5
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.19
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.18
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.99
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.87
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.86
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.84
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.82
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.81
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.73
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.72
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.72
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.55
PHA02790	480	Kelch-like protein; Provisional	94.45
COG5167	776	VID27 Protein involved in vacuole import and degra	94.37
PHA03098	534	kelch-like protein; Provisional	94.17
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.01
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.94
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.86
PRK13684	334	Ycf48-like protein; Provisional	93.77
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.55
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.53
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.49
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.0
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	92.99
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.77
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.71
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.41
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.36
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.32
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.06
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	91.41
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.41
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.4
KOG2247	615	consensus WD40 repeat-containing protein [General	91.36
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.25
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.12
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.1
PRK13684	334	Ycf48-like protein; Provisional	91.07
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	90.97
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.69
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.34
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.91
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	89.76
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.64
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	89.56
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	89.48
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.33
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	89.31
PRK10115	686	protease 2; Provisional	89.21
PRK10115	686	protease 2; Provisional	89.02
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.99
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.65
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	88.65
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	88.48
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.22
PHA02790	480	Kelch-like protein; Provisional	88.13
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.66
PLN00033	398	photosystem II stability/assembly factor; Provisio	87.45
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	86.99
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	86.86
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	86.56
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	86.38
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	86.32
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	85.4
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.82
PLN00033	398	photosystem II stability/assembly factor; Provisio	83.81
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	83.59
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	83.22
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	83.19
COG4590	733	ABC-type uncharacterized transport system, permeas	82.93
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	82.88
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	82.73
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	81.99
KOG2247	615	consensus WD40 repeat-containing protein [General	81.67
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	81.37

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-42  Score=271.00  Aligned_cols=249  Identities=21%  Similarity=0.387  Sum_probs=209.9

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      +|+||+.+..  +.+.++         ||..-|.|++|+|++ ..||+|+.||+|++||..+++              +.
T Consensus       139 vR~WD~~TeT--p~~t~K---------gH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~--------------~~  192 (480)
T KOG0271|consen  139 VRLWDLDTET--PLFTCK---------GHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQ--------------QI  192 (480)
T ss_pred             EEeeccCCCC--cceeec---------CCccEEEEEEECCCc-chhhccccCCeEEEecCCCCC--------------cc
Confidence            5899998754  566664         588999999999999 899999999999999999998              33


Q ss_pred             cccccCCCccEEEEEEcc-----CCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEE
Q 021484           81 RHLIGKNNIHITGLAYSN-----TSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  154 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~-----~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  154 (312)
                      -..+.+|...|++++|.|     .+++||+++ ||.++|||+..+                .++..+.+|..+  |+|+.
T Consensus       193 g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~----------------~~~~~lsgHT~~--VTCvr  254 (480)
T KOG0271|consen  193 GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG----------------TCVRTLSGHTAS--VTCVR  254 (480)
T ss_pred             cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc----------------eEEEEeccCccc--eEEEE
Confidence            333489999999999977     446888875 999999999887                788999999977  99999


Q ss_pred             EecCCCCEEEEeccCceEEEEeccCCeeEE--------------------------------------------------
Q 021484          155 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--------------------------------------------------  184 (312)
Q Consensus       155 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--------------------------------------------------  184 (312)
                      |  -...+|++|+.|++|++|+...|+++.                                                  
T Consensus       255 w--GG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~  332 (480)
T KOG0271|consen  255 W--GGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL  332 (480)
T ss_pred             E--cCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence            8  345688999999999999866543221                                                  


Q ss_pred             -----------------------------EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhh
Q 021484          185 -----------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI  234 (312)
Q Consensus       185 -----------------------------~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~  234 (312)
                                                   .+.+|..-|+.+.|||+++++|+++.|+.|++|+-++++ +.++.+|...+
T Consensus       333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~V  412 (480)
T KOG0271|consen  333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAV  412 (480)
T ss_pred             ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcccee
Confidence                                         344677889999999999999999999999999999988 58899999999


Q ss_pred             hhhhccCCCCceeEEecCCceEEEEEecccCccceeEeecCCCccCCCCCCCeEEEeecCCCCCCCCCCCcee
Q 021484          235 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR  307 (312)
Q Consensus       235 ~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  307 (312)
                      ++.+ |+.|.+++++++.|.++++|++++. ++        ..++++|+|+  ||.+|.+.+......+|-++
T Consensus       413 Yqva-wsaDsRLlVS~SkDsTLKvw~V~tk-Kl--------~~DLpGh~DE--Vf~vDwspDG~rV~sggkdk  473 (480)
T KOG0271|consen  413 YQVA-WSADSRLLVSGSKDSTLKVWDVRTK-KL--------KQDLPGHADE--VFAVDWSPDGQRVASGGKDK  473 (480)
T ss_pred             EEEE-eccCccEEEEcCCCceEEEEEeeee-ee--------cccCCCCCce--EEEEEecCCCceeecCCCce
Confidence            8776 7899999999999999999999877 44        5799999999  99999876665555555444

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.6e-39  Score=255.88  Aligned_cols=225  Identities=16%  Similarity=0.248  Sum_probs=198.1

Q ss_pred             CCCccceEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           27 PMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      .||...|.++.|+|. ....+|+++.||++++|++.+..         ++..+      .+|...|..++|+|+|++|++
T Consensus       214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~---------~l~~l------~gH~~RVs~VafHPsG~~L~T  278 (459)
T KOG0272|consen  214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET---------PLQDL------EGHLARVSRVAFHPSGKFLGT  278 (459)
T ss_pred             eccccceeeEEEccCCCccceeeeccCCceeeeccCCCc---------chhhh------hcchhhheeeeecCCCceeee
Confidence            369999999999997 34799999999999999998764         22222      899999999999999999999


Q ss_pred             ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                      ++ |.+-++||++++                ..+....||...  |.+++| .++|.++++|+.|..-+|||+++++++.
T Consensus       279 asfD~tWRlWD~~tk----------------~ElL~QEGHs~~--v~~iaf-~~DGSL~~tGGlD~~~RvWDlRtgr~im  339 (459)
T KOG0272|consen  279 ASFDSTWRLWDLETK----------------SELLLQEGHSKG--VFSIAF-QPDGSLAATGGLDSLGRVWDLRTGRCIM  339 (459)
T ss_pred             cccccchhhcccccc----------------hhhHhhcccccc--cceeEe-cCCCceeeccCccchhheeecccCcEEE
Confidence            75 999999999998                677788899976  999999 9999999999999999999999999999


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCC-CCceeEEecCCceEEEEEec
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~  262 (312)
                      .+.+|...|.+|+|+|+|..|||||.|++++|||++... +..+++|.+-+- ...+.+ .+.+|+|++.|++++||.-.
T Consensus       340 ~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS-~Vk~~p~~g~fL~TasyD~t~kiWs~~  418 (459)
T KOG0272|consen  340 FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVS-QVKYSPQEGYFLVTASYDNTVKIWSTR  418 (459)
T ss_pred             EecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhh-heEecccCCeEEEEcccCcceeeecCC
Confidence            999999999999999999999999999999999999876 578888888774 445665 78999999999999999866


Q ss_pred             ccCccceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          263 RRQTLAYRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      ..+.         ...+++|+++  |+.+|.+.+.
T Consensus       419 ~~~~---------~ksLaGHe~k--V~s~Dis~d~  442 (459)
T KOG0272|consen  419 TWSP---------LKSLAGHEGK--VISLDISPDS  442 (459)
T ss_pred             Cccc---------chhhcCCccc--eEEEEeccCC
Confidence            5533         4688888888  9999986644

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.4e-37  Score=246.24  Aligned_cols=197  Identities=17%  Similarity=0.281  Sum_probs=181.9

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN  107 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  107 (312)
                      ||..+|..++|+|+| ++|+|++.|.+-++||+.++.               ......+|...|.+++|+++|.++++|+
T Consensus       259 gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~---------------ElL~QEGHs~~v~~iaf~~DGSL~~tGG  322 (459)
T KOG0272|consen  259 GHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKS---------------ELLLQEGHSKGVFSIAFQPDGSLAATGG  322 (459)
T ss_pred             cchhhheeeeecCCC-ceeeecccccchhhcccccch---------------hhHhhcccccccceeEecCCCceeeccC
Confidence            589999999999999 899999999999999999986               2233389999999999999999999975


Q ss_pred             -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                       |..-+|||++++                .++..+.+|...  |.+|+| +|+|..|++|+.|++++|||++..+.+.++
T Consensus       323 lD~~~RvWDlRtg----------------r~im~L~gH~k~--I~~V~f-sPNGy~lATgs~Dnt~kVWDLR~r~~ly~i  383 (459)
T KOG0272|consen  323 LDSLGRVWDLRTG----------------RCIMFLAGHIKE--ILSVAF-SPNGYHLATGSSDNTCKVWDLRMRSELYTI  383 (459)
T ss_pred             ccchhheeecccC----------------cEEEEecccccc--eeeEeE-CCCceEEeecCCCCcEEEeeecccccceec
Confidence             999999999999                899999999966  999999 999999999999999999999998999999


Q ss_pred             ecCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          187 VGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       187 ~~~~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      .+|..-|+.|.|+| .|.+|+|++.|++++||...+.. +.++.+|...++.+. .++++.++++++.|.++++|.
T Consensus       384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~D-is~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLD-ISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEE-eccCCceEEEeccCceeeecc
Confidence            99999999999999 67779999999999999988876 588999999997765 788999999999999999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=8.4e-37  Score=258.87  Aligned_cols=204  Identities=16%  Similarity=0.280  Sum_probs=186.7

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      -||.++|+.+.|+|+. ++|++++.|+++|+|.+.+..              +.... .+|..+|+.+.|+|.|.++|++
T Consensus       448 ~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s--------------~~V~y-~GH~~PVwdV~F~P~GyYFata  511 (707)
T KOG0263|consen  448 YGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWS--------------CLVIY-KGHLAPVWDVQFAPRGYYFATA  511 (707)
T ss_pred             ecCCCceeeeeecccc-cceeeccCCcceeeeecccce--------------eEEEe-cCCCcceeeEEecCCceEEEec
Confidence            4899999999999998 899999999999999999887              44444 7999999999999999999997


Q ss_pred             c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                      + |++.++|.....                ++.+.+.+|.+.  |.|+.| +|+..|+++|+.|.+|++||..+|..++.
T Consensus       512 s~D~tArLWs~d~~----------------~PlRifaghlsD--V~cv~F-HPNs~Y~aTGSsD~tVRlWDv~~G~~VRi  572 (707)
T KOG0263|consen  512 SHDQTARLWSTDHN----------------KPLRIFAGHLSD--VDCVSF-HPNSNYVATGSSDRTVRLWDVSTGNSVRI  572 (707)
T ss_pred             CCCceeeeeecccC----------------Cchhhhcccccc--cceEEE-CCcccccccCCCCceEEEEEcCCCcEEEE
Confidence            5 999999999877                799999999987  999999 99999999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      |.+|.++|.+++|||+|++|++|+.|+.|++||+.++++ ..+.+|... +....++.++..|++++.|..|++||+...
T Consensus       573 F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t-i~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  573 FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT-IYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc-eeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            999999999999999999999999999999999999874 778888444 466668999999999999999999998765


Q ss_pred             Cc
Q 021484          265 QT  266 (312)
Q Consensus       265 ~~  266 (312)
                      ..
T Consensus       652 ~~  653 (707)
T KOG0263|consen  652 IE  653 (707)
T ss_pred             cc
Confidence            33

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-35  Score=231.86  Aligned_cols=238  Identities=15%  Similarity=0.200  Sum_probs=194.9

Q ss_pred             CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      .+||.++|.|+.|+|++ ..|++|+.|.++|+||+.+..               +....++|...|.+++|+|||+.||+
T Consensus       111 ~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeT---------------p~~t~KgH~~WVlcvawsPDgk~iAS  174 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTET---------------PLFTCKGHKNWVLCVAWSPDGKKIAS  174 (480)
T ss_pred             cCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCCCC---------------cceeecCCccEEEEEEECCCcchhhc
Confidence            37999999999999998 899999999999999999875               33333899999999999999999999


Q ss_pred             ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe----cCCCCEEEEeccCceEEEEeccCC
Q 021484          106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF----GPNDEYVMSGSDCGHLFIWKKKGG  180 (312)
Q Consensus       106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~----s~~~~~l~~~~~dg~v~iwd~~~~  180 (312)
                      +. ||.|++||..++.               ...+.+.+|...  |++++|.    .|..++|++++.||.++|||+..+
T Consensus       175 G~~dg~I~lwdpktg~---------------~~g~~l~gH~K~--It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~  237 (480)
T KOG0271|consen  175 GSKDGSIRLWDPKTGQ---------------QIGRALRGHKKW--ITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG  237 (480)
T ss_pred             cccCCeEEEecCCCCC---------------cccccccCcccc--eeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence            85 9999999998873               566889999966  9999992    346789999999999999999999


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhh----------ccCC-------
Q 021484          181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKAN----------KQGR-------  242 (312)
Q Consensus       181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~----------~~~~-------  242 (312)
                      +++..+.+|+.+|+|+.|--+ .++++++.|++|++|+...+. +..+.+|...+-.++          .+.+       
T Consensus       238 ~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~  316 (480)
T KOG0271|consen  238 TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS  316 (480)
T ss_pred             eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence            999999999999999999543 479999999999999987765 355666654442211          1111       


Q ss_pred             ------------------CCceeEEecCCceEEEEEeccc----------Cccc-eeEeecCCCccCCCCCCCeEEEeec
Q 021484          243 ------------------EDHSRITLTPDVIMHVLRLQRR----------QTLA-YRERRYNAADFESDEEEGETYLLGF  293 (312)
Q Consensus       243 ------------------~~~~l~s~~~d~~i~i~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~  293 (312)
                                        ++..+++++.|.++.+|+-...          +.++ ...++|++..+++..-+-.|-.|+.
T Consensus       317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g  396 (480)
T KOG0271|consen  317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG  396 (480)
T ss_pred             hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence                              2356999999999999985332          2222 2388999999999888888888887


Q ss_pred             CCCC
Q 021484          294 SDSD  297 (312)
Q Consensus       294 ~~~~  297 (312)
                      .+|.
T Consensus       397 ~tGk  400 (480)
T KOG0271|consen  397 RTGK  400 (480)
T ss_pred             CCcc
Confidence            7765

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-33  Score=209.84  Aligned_cols=220  Identities=14%  Similarity=0.269  Sum_probs=184.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      ||+||++++++.++.+..         +|...|+++.|..+| +..++|++||+++|||++...              +.
T Consensus        63 vRlyD~~S~np~Pv~t~e---------~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~--------------~q  118 (311)
T KOG0315|consen   63 VRLYDLNSNNPNPVATFE---------GHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLS--------------CQ  118 (311)
T ss_pred             eEEEEccCCCCCceeEEe---------ccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcc--------------cc
Confidence            689999999988887653         478899999999999 899999999999999999855              22


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      +.  ..|..+|+++..+|+..-|+++ .+|.|++||+...                .+...+..... ..|.++.. .|+
T Consensus       119 R~--~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~----------------~c~~~liPe~~-~~i~sl~v-~~d  178 (311)
T KOG0315|consen  119 RN--YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN----------------SCTHELIPEDD-TSIQSLTV-MPD  178 (311)
T ss_pred             hh--ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC----------------ccccccCCCCC-cceeeEEE-cCC
Confidence            22  3467899999999998877777 6999999999875                33333332222 44999998 899


Q ss_pred             CCEEEEeccCceEEEEeccCC------eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC-CC-CCCCCCh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGG------KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DF-PPLPDNA  231 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~-~~~~~~~  231 (312)
                      |.+|+.+...|+.++|++-+.      +++..++.|.+.+..+.+||++++||++|.|.+++||+..+. +. ..+.+|.
T Consensus       179 gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~  258 (311)
T KOG0315|consen  179 GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ  258 (311)
T ss_pred             CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence            999999999999999997643      467788899999999999999999999999999999999887 32 4566788


Q ss_pred             hhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          232 EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       232 ~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      ..+..++ ++.++++++++++|+..++|++..+.
T Consensus       259 rWvWdc~-FS~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  259 RWVWDCA-FSADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             ceEEeee-eccCccEEEecCCCCceeecccccCc
Confidence            8887766 78899999999999999999988764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-32  Score=206.94  Aligned_cols=240  Identities=15%  Similarity=0.219  Sum_probs=197.5

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .+|++.|+.++..+.++.++++++.|.++.+|++.....    ..+.++      ..+.+|...|..++.+++|++.+++
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~----~~G~~~------r~~~GHsH~v~dv~~s~dg~~alS~   81 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI----KYGVPV------RRLTGHSHFVSDVVLSSDGNFALSA   81 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc----ccCcee------eeeeccceEecceEEccCCceEEec
Confidence            469999999999999889999999999999999986631    112222      2338899999999999999999997


Q ss_pred             c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                      + |+++++||+.++                +..+.|.+|...  |.+++| +++.+++++|+.|.+|++|+.. +.+..+
T Consensus        82 swD~~lrlWDl~~g----------------~~t~~f~GH~~d--Vlsva~-s~dn~qivSGSrDkTiklwnt~-g~ck~t  141 (315)
T KOG0279|consen   82 SWDGTLRLWDLATG----------------ESTRRFVGHTKD--VLSVAF-STDNRQIVSGSRDKTIKLWNTL-GVCKYT  141 (315)
T ss_pred             cccceEEEEEecCC----------------cEEEEEEecCCc--eEEEEe-cCCCceeecCCCcceeeeeeec-ccEEEE
Confidence            5 999999999998                789999999977  999999 9999999999999999999997 455555


Q ss_pred             eecC--ccceEEEEEcCC--CCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          186 MVGD--RHVVNQLEPHPH--IPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       186 ~~~~--~~~v~~~~~~p~--~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      +..+  .+.|+++.|+|+  ..++++++.|++|++||+++.++ .++.+|...+ ....+++|+.+.++|+.|+.+.+||
T Consensus       142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v-~t~~vSpDGslcasGgkdg~~~Lwd  220 (315)
T KOG0279|consen  142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV-NTVTVSPDGSLCASGGKDGEAMLWD  220 (315)
T ss_pred             EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE-EEEEECCCCCEEecCCCCceEEEEE
Confidence            5433  789999999998  67899999999999999999986 5566776666 4455899999999999999999999


Q ss_pred             ecccCcccee---------EeecCCCccCCCCCCCeEEEeecCCCCC
Q 021484          261 LQRRQTLAYR---------ERRYNAADFESDEEEGETYLLGFSDSDA  298 (312)
Q Consensus       261 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~  298 (312)
                      ++....+-+.         .++|+..-+....++ .|.+||.+.+..
T Consensus       221 L~~~k~lysl~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~  266 (315)
T KOG0279|consen  221 LNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAV  266 (315)
T ss_pred             ccCCceeEeccCCCeEeeEEecCCceeEeeccCC-ceEEEeccchhh
Confidence            9876543221         566666665544333 388888877653

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-33  Score=209.42  Aligned_cols=203  Identities=14%  Similarity=0.177  Sum_probs=167.1

Q ss_pred             CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      +.||+..|..+..++++ ++.++++.|+++++||+.+++               ....+.+|...|.+++|+++.+.+++
T Consensus        59 ~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~---------------~t~~f~GH~~dVlsva~s~dn~qivS  122 (315)
T KOG0279|consen   59 LTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGE---------------STRRFVGHTKDVLSVAFSTDNRQIVS  122 (315)
T ss_pred             eeccceEecceEEccCC-ceEEeccccceEEEEEecCCc---------------EEEEEEecCCceEEEEecCCCceeec
Confidence            35799999999999999 899999999999999999986               23333899999999999999999999


Q ss_pred             ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC--CCEEEEeccCceEEEEeccCCee
Q 021484          106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGKL  182 (312)
Q Consensus       106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~--~~~l~~~~~dg~v~iwd~~~~~~  182 (312)
                      ++ |.+|.+|++...                 +..++..+.....|.++.| +|+  ..+|++++.|++|++||+++.+.
T Consensus       123 GSrDkTiklwnt~g~-----------------ck~t~~~~~~~~WVscvrf-sP~~~~p~Ivs~s~DktvKvWnl~~~~l  184 (315)
T KOG0279|consen  123 GSRDKTIKLWNTLGV-----------------CKYTIHEDSHREWVSCVRF-SPNESNPIIVSASWDKTVKVWNLRNCQL  184 (315)
T ss_pred             CCCcceeeeeeeccc-----------------EEEEEecCCCcCcEEEEEE-cCCCCCcEEEEccCCceEEEEccCCcch
Confidence            85 999999999775                 4444444432356999999 887  78999999999999999999999


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      ...+.+|++.++.+++||||..+++|+.||.+.+||++.++.....++...+ ....++|+.-.|+. ..+..|+||++.
T Consensus       185 ~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v-~sl~fspnrywL~~-at~~sIkIwdl~  262 (315)
T KOG0279|consen  185 RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIV-NSLCFSPNRYWLCA-ATATSIKIWDLE  262 (315)
T ss_pred             hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeE-eeEEecCCceeEee-ccCCceEEEecc
Confidence            9999999999999999999999999999999999999988753333344444 44446665444444 445559999987


Q ss_pred             cc
Q 021484          263 RR  264 (312)
Q Consensus       263 ~~  264 (312)
                      ..
T Consensus       263 ~~  264 (315)
T KOG0279|consen  263 SK  264 (315)
T ss_pred             ch
Confidence            65

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.7e-31  Score=198.23  Aligned_cols=206  Identities=18%  Similarity=0.295  Sum_probs=176.0

Q ss_pred             CCCccceEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           27 PMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      +||++++..++|+|- | .+||+++.|+.|++|+...+.-           ..|...+-.+|+..|.+++|+|.|++|++
T Consensus        11 ~gh~~r~W~~awhp~~g-~ilAscg~Dk~vriw~~~~~~s-----------~~ck~vld~~hkrsVRsvAwsp~g~~La~   78 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKG-VILASCGTDKAVRIWSTSSGDS-----------WTCKTVLDDGHKRSVRSVAWSPHGRYLAS   78 (312)
T ss_pred             cCCCCcEEEEEeccCCc-eEEEeecCCceEEEEecCCCCc-----------EEEEEeccccchheeeeeeecCCCcEEEE
Confidence            469999999999997 5 7999999999999999985320           11444454689999999999999999999


Q ss_pred             ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC---e
Q 021484          106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---K  181 (312)
Q Consensus       106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~---~  181 (312)
                      ++ |.++.||.-..+              .++++.++.||.+.  |.+++| +++|++||+++.|+.|.||.....   +
T Consensus        79 aSFD~t~~Iw~k~~~--------------efecv~~lEGHEnE--VK~Vaw-s~sG~~LATCSRDKSVWiWe~deddEfe  141 (312)
T KOG0645|consen   79 ASFDATVVIWKKEDG--------------EFECVATLEGHENE--VKCVAW-SASGNYLATCSRDKSVWIWEIDEDDEFE  141 (312)
T ss_pred             eeccceEEEeecCCC--------------ceeEEeeeeccccc--eeEEEE-cCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence            86 999999987654              33678899999987  999999 999999999999999999998743   5


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC-CCC---CCCCCCChhhhhhhhccCCCCceeEEecCCceEE
Q 021484          182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH  257 (312)
Q Consensus       182 ~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  257 (312)
                      +...++.|+..|..+.|||...+|++++.|.+|++|+-. ...   ..++.+|...+.... +.+.+..|++++.|++++
T Consensus       142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~-F~~~G~rl~s~sdD~tv~  220 (312)
T KOG0645|consen  142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLA-FDNIGSRLVSCSDDGTVS  220 (312)
T ss_pred             EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEE-ecCCCceEEEecCCcceE
Confidence            778899999999999999999999999999999999876 332   467778887775554 667788999999999999


Q ss_pred             EEEec
Q 021484          258 VLRLQ  262 (312)
Q Consensus       258 i~~~~  262 (312)
                      ||...
T Consensus       221 Iw~~~  225 (312)
T KOG0645|consen  221 IWRLY  225 (312)
T ss_pred             eeeec
Confidence            99844

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.2e-32  Score=213.76  Aligned_cols=248  Identities=17%  Similarity=0.247  Sum_probs=193.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||..+-.+..++.           ||.+.|.|+.|..   +.+++|++|.+|++||..+++              +.
T Consensus       219 ikiWD~n~~~c~~~L~-----------GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge--------------~l  270 (499)
T KOG0281|consen  219 IKIWDKNSLECLKILT-----------GHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGE--------------PL  270 (499)
T ss_pred             eEEeccccHHHHHhhh-----------cCCCcEEeeeccc---eEEEecCCCceEEEEeccCCc--------------hh
Confidence            5778877766555554           4899999999975   699999999999999999998              33


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+ .+|.+.|..+.|+.  .+++++ .|..+.+||+....             ...+.+.+.||...  |..+.|   +
T Consensus       271 ~tl-ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps-------------~it~rrVLvGHrAa--VNvVdf---d  329 (499)
T KOG0281|consen  271 NTL-IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT-------------DITLRRVLVGHRAA--VNVVDF---D  329 (499)
T ss_pred             hHH-hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCch-------------HHHHHHHHhhhhhh--eeeecc---c
Confidence            333 78999999999974  377776 59999999997651             11355778899977  999988   4


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN  238 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~  238 (312)
                      .+++++++.|.+|++|++.+++.++++.+|...|.|+.+  .++++++|+.|.+|++||+..+.. ..+.+|..-+ .+.
T Consensus       330 ~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLv-Rci  406 (499)
T KOG0281|consen  330 DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV-RCI  406 (499)
T ss_pred             cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhh-hhe
Confidence            679999999999999999999999999999999999887  889999999999999999999874 6667666655 333


Q ss_pred             ccCCCCceeEEecCCceEEEEEecccCcc-----------------ceeEeecCCCccCCCCCCCeEEEeecCCCCCCCC
Q 021484          239 KQGREDHSRITLTPDVIMHVLRLQRRQTL-----------------AYRERRYNAADFESDEEEGETYLLGFSDSDASSE  301 (312)
Q Consensus       239 ~~~~~~~~l~s~~~d~~i~i~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  301 (312)
                        --+...+++|+.||.+++||+.....+                 ..+..+.+...+.+...+..+++|||.++-....
T Consensus       407 --RFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~~~  484 (499)
T KOG0281|consen  407 --RFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPSAA  484 (499)
T ss_pred             --eecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcccc
Confidence              235678999999999999998764322                 1112233444444444445599999988866544


Q ss_pred             C
Q 021484          302 G  302 (312)
Q Consensus       302 ~  302 (312)
                      +
T Consensus       485 ~  485 (499)
T KOG0281|consen  485 E  485 (499)
T ss_pred             c
Confidence            3

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.6e-31  Score=200.28  Aligned_cols=253  Identities=15%  Similarity=0.160  Sum_probs=199.5

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||...|+++.|+++. +.+++++.||.+.|||.-+..              .. +.+.-....|...+|+|.|+++|.+
T Consensus        52 kGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~Ttn--------------K~-haipl~s~WVMtCA~sPSg~~VAcG  115 (343)
T KOG0286|consen   52 KGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTN--------------KV-HAIPLPSSWVMTCAYSPSGNFVACG  115 (343)
T ss_pred             cccccceeeeEecCCc-CeEEeeccCCeEEEEEccccc--------------ce-eEEecCceeEEEEEECCCCCeEEec
Confidence            4799999999999998 899999999999999998775              11 2224456789999999999999997


Q ss_pred             c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                      . |+...||++.+......          .+..+.+.+|..  ++.++.| - +...|++++.|.+..+||+.+++.+..
T Consensus       116 GLdN~Csiy~ls~~d~~g~----------~~v~r~l~gHtg--ylScC~f-~-dD~~ilT~SGD~TCalWDie~g~~~~~  181 (343)
T KOG0286|consen  116 GLDNKCSIYPLSTRDAEGN----------VRVSRELAGHTG--YLSCCRF-L-DDNHILTGSGDMTCALWDIETGQQTQV  181 (343)
T ss_pred             CcCceeEEEeccccccccc----------ceeeeeecCccc--eeEEEEE-c-CCCceEecCCCceEEEEEcccceEEEE
Confidence            5 99999999985411100          134567889985  4999999 4 467789999999999999999999999


Q ss_pred             eecCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          186 MVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      |.+|.+.|.+++++| +++.+++|+-|++.+|||++.+. .+++.+|...+ ....+.|++.-+++|+.|++.+++|++.
T Consensus       182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDI-Nsv~ffP~G~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDI-NSVRFFPSGDAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccccc-ceEEEccCCCeeeecCCCceeEEEeecC
Confidence            999999999999999 89999999999999999999876 58899998888 4455788999999999999999999998


Q ss_pred             cCcccee------------EeecCCCccCCCCCCCeEEEeecCCCCCCCCCC--Cceeeee
Q 021484          264 RQTLAYR------------ERRYNAADFESDEEEGETYLLGFSDSDASSEGG--GNQRECI  310 (312)
Q Consensus       264 ~~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~  310 (312)
                      .+.+...            .++..+..+..+-++..+++||.-.++......  ++.-.|+
T Consensus       261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl  321 (343)
T KOG0286|consen  261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL  321 (343)
T ss_pred             CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE
Confidence            6555443            233334444444555556777765555433222  5555553

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.8e-32  Score=229.66  Aligned_cols=246  Identities=16%  Similarity=0.198  Sum_probs=206.5

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCC-----------------CCcccccccccccCCCccEE
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD-----------------TPVDTFCPRHLIGKNNIHIT   92 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~i~   92 (312)
                      ...++|..|++++ .++|.|..|..|++|.+...++.......                 ...... ....+.+|.++|.
T Consensus       378 ~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~-~~~~L~GH~GPVy  455 (707)
T KOG0263|consen  378 YQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG-TSRTLYGHSGPVY  455 (707)
T ss_pred             CCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc-eeEEeecCCCcee
Confidence            3579999999998 79999999999999999854432211100                 000111 1222479999999


Q ss_pred             EEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCce
Q 021484           93 GLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH  171 (312)
Q Consensus        93 ~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~  171 (312)
                      ...|+|+.++|++++ |+++|+|.+.+.                .++..++||..+  |..+.| +|-|.|+|+++.|++
T Consensus       456 g~sFsPd~rfLlScSED~svRLWsl~t~----------------s~~V~y~GH~~P--VwdV~F-~P~GyYFatas~D~t  516 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCSEDSSVRLWSLDTW----------------SCLVIYKGHLAP--VWDVQF-APRGYYFATASHDQT  516 (707)
T ss_pred             eeeecccccceeeccCCcceeeeecccc----------------eeEEEecCCCcc--eeeEEe-cCCceEEEecCCCce
Confidence            999999999999975 999999999988                788899999977  999999 899999999999999


Q ss_pred             EEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEe
Q 021484          172 LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITL  250 (312)
Q Consensus       172 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~  250 (312)
                      -++|.....++++.+.+|-+.|.|+.|||+..|++|||.|.++|+||..++. +..+.+|..++.. ..+++.+++|+++
T Consensus       517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~a-l~~Sp~Gr~LaSg  595 (707)
T KOG0263|consen  517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTA-LAFSPCGRYLASG  595 (707)
T ss_pred             eeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEE-EEEcCCCceEeec
Confidence            9999999999999999999999999999999999999999999999999886 4667888888754 4589999999999


Q ss_pred             cCCceEEEEEecccC---------cccee-EeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          251 TPDVIMHVLRLQRRQ---------TLAYR-ERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       251 ~~d~~i~i~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      +.|+.|++||+....         ..++. .++.++.-++++..++.|.+||+..-.
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            999999999987632         22333 889999999999999999999985543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.7e-31  Score=212.61  Aligned_cols=214  Identities=17%  Similarity=0.260  Sum_probs=183.8

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-C
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d  108 (312)
                      ...|++++|+.+| .+||+|+.||.+++|+.....               ... +..|.++|.++.|+..|.+|++++ |
T Consensus       235 nkdVT~L~Wn~~G-~~LatG~~~G~~riw~~~G~l---------------~~t-l~~HkgPI~slKWnk~G~yilS~~vD  297 (524)
T KOG0273|consen  235 NKDVTSLDWNNDG-TLLATGSEDGEARIWNKDGNL---------------IST-LGQHKGPIFSLKWNKKGTYILSGGVD  297 (524)
T ss_pred             cCCcceEEecCCC-CeEEEeecCcEEEEEecCchh---------------hhh-hhccCCceEEEEEcCCCCEEEeccCC
Confidence            4679999999999 899999999999999987543               112 278999999999999999999975 9


Q ss_pred             CcEEEEEcCCCc-------------------------CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE
Q 021484          109 ELVYLFEKNMGL-------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  163 (312)
Q Consensus       109 ~~i~iwd~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l  163 (312)
                      +++.+||..++.                         ...+..+.+..+..-.+..++.+|.+.  |.++.| +|.+.+|
T Consensus       298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~--V~alk~-n~tg~LL  374 (524)
T KOG0273|consen  298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE--VNALKW-NPTGSLL  374 (524)
T ss_pred             ccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCc--eEEEEE-CCCCceE
Confidence            999999997664                         112233444445566788999999977  999999 9999999


Q ss_pred             EEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC---------CeEEEEeCCCcEEEccCCCCC-CCCCCCChhh
Q 021484          164 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI---------PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEK  233 (312)
Q Consensus       164 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~---------~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~  233 (312)
                      ++++.|++++||++........+.+|...|+.+.|+|+|         ..+++++.|++|++||+..+. +..+..|..+
T Consensus       375 aS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p  454 (524)
T KOG0273|consen  375 ASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP  454 (524)
T ss_pred             EEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc
Confidence            999999999999999899999999999999999999976         358999999999999998876 5778789999


Q ss_pred             hhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          234 IMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       234 ~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ++... ++++++++++|+.|+.+.+|+.+..
T Consensus       455 Vysva-fS~~g~ylAsGs~dg~V~iws~~~~  484 (524)
T KOG0273|consen  455 VYSVA-FSPNGRYLASGSLDGCVHIWSTKTG  484 (524)
T ss_pred             eEEEE-ecCCCcEEEecCCCCeeEeccccch
Confidence            86655 8999999999999999999998765

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1e-30  Score=225.58  Aligned_cols=236  Identities=18%  Similarity=0.316  Sum_probs=198.8

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  107 (312)
                      |...|.++.|+|++ +.+++++.++.+++|+....+.            .....+ .+|...|..++|+|++++++++ .
T Consensus       158 ~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~------------~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~  223 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKS------------NLLREL-SGHTRGVSDVAFSPDGSYLLSGSD  223 (456)
T ss_pred             ccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccc------------hhhccc-cccccceeeeEECCCCcEEEEecC
Confidence            47789999999999 7899999999999999965541            011222 7899999999999999999997 5


Q ss_pred             CCcEEEEEcC-CCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          108 DELVYLFEKN-MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       108 d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      |++|++||+. .+                ..++++.+|...  |++++| +|.++++++|+.|++|++||+++++++..+
T Consensus       224 D~tiriwd~~~~~----------------~~~~~l~gH~~~--v~~~~f-~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l  284 (456)
T KOG0266|consen  224 DKTLRIWDLKDDG----------------RNLKTLKGHSTY--VTSVAF-SPDGNLLVSGSDDGTVRIWDVRTGECVRKL  284 (456)
T ss_pred             CceEEEeeccCCC----------------eEEEEecCCCCc--eEEEEe-cCCCCEEEEecCCCcEEEEeccCCeEEEee
Confidence            9999999993 33                688999999976  999999 999999999999999999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC---CCCCCCChhh-hhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEK-IMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      .+|.+.|++++|++++++|++++.|+.|++||+.++.   ...+.++... .+....+++++.+++++..|+.+++|+++
T Consensus       285 ~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  285 KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR  364 (456)
T ss_pred             eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence            9999999999999999999999999999999999988   3456655555 67788899999999999999999999987


Q ss_pred             ccCcccee-------------EeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          263 RRQTLAYR-------------ERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       263 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      ........             ...+.+..+.++..++.|++++.+.+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~  412 (456)
T KOG0266|consen  365 SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG  412 (456)
T ss_pred             CCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence            54211111             224456667777888889999987654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.3e-30  Score=197.83  Aligned_cols=223  Identities=16%  Similarity=0.229  Sum_probs=183.4

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      +.|||..+.+....+...           ..-|..++|+|.+ +++|.|+-|....||++.+.+-..      .+   ..
T Consensus        79 lIvWDs~TtnK~haipl~-----------s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g------~~---~v  137 (343)
T KOG0286|consen   79 LIVWDSFTTNKVHAIPLP-----------SSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEG------NV---RV  137 (343)
T ss_pred             EEEEEcccccceeEEecC-----------ceeEEEEEECCCC-CeEEecCcCceeEEEecccccccc------cc---ee
Confidence            357887665433333332           4459999999999 899999999999999998653110      00   22


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-C
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-N  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~  159 (312)
                      ...+.+|.+.+.++.|-+++++|.++.|.+..+||++++                +.++.|.+|...  |.++++ +| +
T Consensus       138 ~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g----------------~~~~~f~GH~gD--V~slsl-~p~~  198 (343)
T KOG0286|consen  138 SRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG----------------QQTQVFHGHTGD--VMSLSL-SPSD  198 (343)
T ss_pred             eeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc----------------eEEEEecCCccc--EEEEec-CCCC
Confidence            333489999999999999887777778999999999999                899999999987  999999 88 9


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChh--hhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAE--KIMK  236 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~--~~~~  236 (312)
                      ++.+++|+-|+..++||++.+.+++.|.+|...|+++.|.|+|.-|++|+.|++.|+||++... +..+. +..  ..+.
T Consensus       199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-~~~~~~git  277 (343)
T KOG0286|consen  199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-HDSIICGIT  277 (343)
T ss_pred             CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-cCcccCCce
Confidence            9999999999999999999999999999999999999999999999999999999999999865 33332 222  2245


Q ss_pred             hhccCCCCceeEEecCCceEEEEEeccc
Q 021484          237 ANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       237 ~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ...++..+++|+++..|..+.+||.-..
T Consensus       278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~  305 (343)
T KOG0286|consen  278 SVAFSKSGRLLFAGYDDFTCNVWDTLKG  305 (343)
T ss_pred             eEEEcccccEEEeeecCCceeEeecccc
Confidence            5567889999999999999999995433

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.98  E-value=7.4e-32  Score=213.00  Aligned_cols=229  Identities=17%  Similarity=0.297  Sum_probs=190.1

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-C
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d  108 (312)
                      +.+|..+.|.|+| +.|++|+..|.+.+|+..+.               ....++..|..+|.++.|+++|.+++++. +
T Consensus        96 kc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~f---------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g  159 (464)
T KOG0284|consen   96 KCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSF---------------NFETILQAHDSPVRTMKWSHNGTWMISGDKG  159 (464)
T ss_pred             ccceeeEEEcCCC-ceeEeecccccEEEecCcee---------------eHHHHhhhhcccceeEEEccCCCEEEEcCCC
Confidence            5689999999999 89999999999999998543               45566689999999999999999999985 9


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  188 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  188 (312)
                      |.|++|+....                 .++.+..|.. ..|++++| +|+...++++++||+|+|||..-.+....+.+
T Consensus       160 G~iKyWqpnmn-----------------nVk~~~ahh~-eaIRdlaf-SpnDskF~t~SdDg~ikiWdf~~~kee~vL~G  220 (464)
T KOG0284|consen  160 GMIKYWQPNMN-----------------NVKIIQAHHA-EAIRDLAF-SPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG  220 (464)
T ss_pred             ceEEecccchh-----------------hhHHhhHhhh-hhhheecc-CCCCceeEEecCCCeEEEEeccCCchhheecc
Confidence            99999998764                 5666666652 23999999 89999999999999999999998888889999


Q ss_pred             CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021484          189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       189 ~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      |.-.|.+++|||....++++|.|..|++||.+++. +.++..|...++... +.+++++|++++.|..++++|++....+
T Consensus       221 HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~-f~~n~N~Llt~skD~~~kv~DiR~mkEl  299 (464)
T KOG0284|consen  221 HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK-FNPNGNWLLTGSKDQSCKVFDIRTMKEL  299 (464)
T ss_pred             CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE-EcCCCCeeEEccCCceEEEEehhHhHHH
Confidence            99999999999999999999999999999999886 688888888886655 7777899999999999999999832111


Q ss_pred             ---------cee-Eeec-CCCccCCCCCCCeEEEeecC
Q 021484          268 ---------AYR-ERRY-NAADFESDEEEGETYLLGFS  294 (312)
Q Consensus       268 ---------~~~-~~~~-~~~~~~~~~~~~~v~~~~~~  294 (312)
                               +.. .+.| ...-+.++..++.|+.+.+.
T Consensus       300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             HHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence                     111 2233 23344556677778777664

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.98  E-value=7.3e-31  Score=199.83  Aligned_cols=235  Identities=17%  Similarity=0.225  Sum_probs=195.9

Q ss_pred             CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      .+||++.|+.+.|+|+| .+||+|+.|..|.+|+.....              .....+++|+++|..+.|.+++..+++
T Consensus        43 l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdc--------------eN~~~lkgHsgAVM~l~~~~d~s~i~S  107 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDC--------------ENFWVLKGHSGAVMELHGMRDGSHILS  107 (338)
T ss_pred             cCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccc--------------cceeeeccccceeEeeeeccCCCEEEE
Confidence            37999999999999988 899999999999999976443              233344799999999999999998888


Q ss_pred             e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                      + .|.+++.||.+++                +..+.+++|..-  |..+.-.....+++.+++.|+++++||+++..+++
T Consensus       108 ~gtDk~v~~wD~~tG----------------~~~rk~k~h~~~--vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~  169 (338)
T KOG0265|consen  108 CGTDKTVRGWDAETG----------------KRIRKHKGHTSF--VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK  169 (338)
T ss_pred             ecCCceEEEEecccc----------------eeeehhccccce--eeecCccccCCeEEEecCCCceEEEEeecccchhh
Confidence            6 5999999999999                889999999865  77775422234567789999999999999998888


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      ++. ..-.++++.|..++..+.+|+-|+.|++||++.+. ...+.+|...+... ..++++.++.+-+.|..+++||++.
T Consensus       170 t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~l-sls~~gs~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  170 TFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGL-SLSRYGSFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             ccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeE-EeccCCCccccccccceEEEEEecc
Confidence            775 34578999999999999999999999999998887 47788888888554 4788999999999999999999875


Q ss_pred             cC------------------ccceeEeecCCCccCCCCCCCeEEEeecCC
Q 021484          264 RQ------------------TLAYRERRYNAADFESDEEEGETYLLGFSD  295 (312)
Q Consensus       264 ~~------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  295 (312)
                      ..                  .+....++|+...+..+..+..+|+||...
T Consensus       248 ~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  248 FAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             cCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence            32                  122236688888888888888899998754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=2.3e-31  Score=207.21  Aligned_cols=237  Identities=17%  Similarity=0.287  Sum_probs=194.5

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||.+-|.|+++.|-+ ..|++|+.|++|+|||+.++++               +..+.+|...|..+++++-..|++++
T Consensus       148 ~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~L---------------kltltGhi~~vr~vavS~rHpYlFs~  211 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQL---------------KLTLTGHIETVRGVAVSKRHPYLFSA  211 (460)
T ss_pred             hhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeE---------------EEeecchhheeeeeeecccCceEEEe
Confidence            4899999999999987 8999999999999999999974               22237899999999999998899986


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                       .|++|+.||++.+                +.++.+.||...  |.+++. .|.-..|++|+.|.++++||+++...+..
T Consensus       212 gedk~VKCwDLe~n----------------kvIR~YhGHlS~--V~~L~l-hPTldvl~t~grDst~RvWDiRtr~~V~~  272 (460)
T KOG0285|consen  212 GEDKQVKCWDLEYN----------------KVIRHYHGHLSG--VYCLDL-HPTLDVLVTGGRDSTIRVWDIRTRASVHV  272 (460)
T ss_pred             cCCCeeEEEechhh----------------hhHHHhccccce--eEEEec-cccceeEEecCCcceEEEeeecccceEEE
Confidence             6999999999988                899999999977  999998 89999999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      +.+|..+|..+.+.|....+++|+.|++|++||++.++- .++..|...+ .....++....++++++|. ++-|++..+
T Consensus       273 l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksv-ral~lhP~e~~fASas~dn-ik~w~~p~g  350 (460)
T KOG0285|consen  273 LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSV-RALCLHPKENLFASASPDN-IKQWKLPEG  350 (460)
T ss_pred             ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccccee-eEEecCCchhhhhccCCcc-ceeccCCcc
Confidence            999999999999999999999999999999999998874 5555454444 4444666666677777664 678877654


Q ss_pred             Cccce---------eEeecCCCccCCCCCCCeEEEeecCCCCCCC
Q 021484          265 QTLAY---------RERRYNAADFESDEEEGETYLLGFSDSDASS  300 (312)
Q Consensus       265 ~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  300 (312)
                      .-+..         .-.......+.++.|.|.+.++|..++-.-.
T Consensus       351 ~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ  395 (460)
T KOG0285|consen  351 EFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQ  395 (460)
T ss_pred             chhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccc
Confidence            32211         1122223445567788888888887775443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.98  E-value=1.5e-31  Score=211.25  Aligned_cols=200  Identities=13%  Similarity=0.219  Sum_probs=178.0

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      .|..+|+++.|++++ ..+++|..+|.|++|+..-..               ++.+...|...|++++|+|+...++++ 
T Consensus       136 aHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnn---------------Vk~~~ahh~eaIRdlafSpnDskF~t~S  199 (464)
T KOG0284|consen  136 AHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNN---------------VKIIQAHHAEAIRDLAFSPNDSKFLTCS  199 (464)
T ss_pred             hhcccceeEEEccCC-CEEEEcCCCceEEecccchhh---------------hHHhhHhhhhhhheeccCCCCceeEEec
Confidence            488999999999999 899999999999999987542               223324556999999999988888886 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .||.|+|||....                +..+.+.+|.-.  |.+++| +|...++++|+.|..|++||.++++++.++
T Consensus       200 dDg~ikiWdf~~~----------------kee~vL~GHgwd--VksvdW-HP~kgLiasgskDnlVKlWDprSg~cl~tl  260 (464)
T KOG0284|consen  200 DDGTIKIWDFRMP----------------KEERVLRGHGWD--VKSVDW-HPTKGLIASGSKDNLVKLWDPRSGSCLATL  260 (464)
T ss_pred             CCCeEEEEeccCC----------------chhheeccCCCC--cceecc-CCccceeEEccCCceeEeecCCCcchhhhh
Confidence            5999999999887                677888999877  999999 899999999999999999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC-CCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      .+|+..|..+.|+|++++|+|+|.|..++++|+++. ++..+.+|.+.+....|......++.+++.|+.+..|.+.
T Consensus       261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence            999999999999999999999999999999999954 5788889999997777555588899999999999999876

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=2.6e-30  Score=218.60  Aligned_cols=201  Identities=17%  Similarity=0.332  Sum_probs=171.8

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      -||..++++++++|+| +++|||+.||+|+|||..++-              |..++ ..|+..|+.+.|+..|+.++++
T Consensus       347 QgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~Sgf--------------C~vTF-teHts~Vt~v~f~~~g~~llss  410 (893)
T KOG0291|consen  347 QGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGF--------------CFVTF-TEHTSGVTAVQFTARGNVLLSS  410 (893)
T ss_pred             cccccceeeEEECCCC-cEEEeccCCCcEEEEeccCce--------------EEEEe-ccCCCceEEEEEEecCCEEEEe
Confidence            3689999999999999 899999999999999999886              55555 8899999999999999988886


Q ss_pred             c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc-eEEEEeccCCeeEE
Q 021484          107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-HLFIWKKKGGKLVR  184 (312)
Q Consensus       107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg-~v~iwd~~~~~~~~  184 (312)
                      + ||+|+.||+...                +.-++|..... ....+++. +|.|..+.+|+.|. .|++|++++|+.+-
T Consensus       411 SLDGtVRAwDlkRY----------------rNfRTft~P~p-~Qfscvav-D~sGelV~AG~~d~F~IfvWS~qTGqllD  472 (893)
T KOG0291|consen  411 SLDGTVRAWDLKRY----------------RNFRTFTSPEP-IQFSCVAV-DPSGELVCAGAQDSFEIFVWSVQTGQLLD  472 (893)
T ss_pred             ecCCeEEeeeeccc----------------ceeeeecCCCc-eeeeEEEE-cCCCCEEEeeccceEEEEEEEeecCeeee
Confidence            5 999999999877                56667765432 33678887 89999999998877 59999999999999


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC--CCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      .+.+|.++|.+++|+|.+..|+++|.|++||+||+-..  ...++. ....++. ..+.|++..++..+-||.|.+||++
T Consensus       473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~-vsfrPdG~elaVaTldgqItf~d~~  550 (893)
T KOG0291|consen  473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLA-VSFRPDGKELAVATLDGQITFFDIK  550 (893)
T ss_pred             hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeE-EEEcCCCCeEEEEEecceEEEEEhh
Confidence            99999999999999999999999999999999998765  445554 3334433 3478899999999999999999975


Q ss_pred             c
Q 021484          263 R  263 (312)
Q Consensus       263 ~  263 (312)
                      .
T Consensus       551 ~  551 (893)
T KOG0291|consen  551 E  551 (893)
T ss_pred             h
Confidence            4

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=5.6e-30  Score=221.02  Aligned_cols=206  Identities=18%  Similarity=0.358  Sum_probs=176.0

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-eecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      .+|...|++++|+|++ .++++++.|++|++||+... .              +.+.+ .+|...|++++|+|+|+++++
T Consensus       200 ~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~--------------~~~~l-~gH~~~v~~~~f~p~g~~i~S  263 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGR--------------NLKTL-KGHSTYVTSVAFSPDGNLLVS  263 (456)
T ss_pred             cccccceeeeEECCCC-cEEEEecCCceEEEeeccCCCe--------------EEEEe-cCCCCceEEEEecCCCCEEEE
Confidence            4699999999999999 79999999999999999433 3              33334 799999999999999999999


Q ss_pred             e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe--e
Q 021484          106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--L  182 (312)
Q Consensus       106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~  182 (312)
                      + .|++|++||++++                ++.+.+.+|...  |++++| ++++++|++++.|+.|++||+.+++  +
T Consensus       264 gs~D~tvriWd~~~~----------------~~~~~l~~hs~~--is~~~f-~~d~~~l~s~s~d~~i~vwd~~~~~~~~  324 (456)
T KOG0266|consen  264 GSDDGTVRIWDVRTG----------------ECVRKLKGHSDG--ISGLAF-SPDGNLLVSASYDGTIRVWDLETGSKLC  324 (456)
T ss_pred             ecCCCcEEEEeccCC----------------eEEEeeeccCCc--eEEEEE-CCCCCEEEEcCCCccEEEEECCCCceee
Confidence            7 5999999999998                899999999977  999999 9999999999999999999999998  5


Q ss_pred             EEEeecCccc--eEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhh--hhhhccCCCCceeEEecCCceEE
Q 021484          183 VRLMVGDRHV--VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI--MKANKQGREDHSRITLTPDVIMH  257 (312)
Q Consensus       183 ~~~~~~~~~~--v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~d~~i~  257 (312)
                      +..+..+...  ++.++|+|++.++++++.|+++++||+.... ...+.+|....  +........+.++++++.|+.++
T Consensus       325 ~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~  404 (456)
T KOG0266|consen  325 LKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVY  404 (456)
T ss_pred             eecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEE
Confidence            6777766544  9999999999999999999999999999775 45555565542  22222345789999999999999


Q ss_pred             EEEecccCcc
Q 021484          258 VLRLQRRQTL  267 (312)
Q Consensus       258 i~~~~~~~~~  267 (312)
                      +|++.+....
T Consensus       405 ~~~~~s~~~~  414 (456)
T KOG0266|consen  405 VWDSSSGGIL  414 (456)
T ss_pred             EEeCCccchh
Confidence            9998875444

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=1.4e-29  Score=188.20  Aligned_cols=251  Identities=15%  Similarity=0.273  Sum_probs=205.1

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      ||+|...++.+...++-.           ...|+.+...|++ ..||+++. ..||+||+++..       +.|+.+|  
T Consensus        22 IRfWqa~tG~C~rTiqh~-----------dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~n-------p~Pv~t~--   79 (311)
T KOG0315|consen   22 IRFWQALTGICSRTIQHP-----------DSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSNN-------PNPVATF--   79 (311)
T ss_pred             eeeeehhcCeEEEEEecC-----------ccceeeEEEcCCc-chhhhccC-CeeEEEEccCCC-------CCceeEE--
Confidence            689999999887777654           3459999999998 67777764 789999999887       3456655  


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                          .+|...|+++.|.-+|+.++++ .||+++|||++..                .+.+.++ +..+  |+++.. +|+
T Consensus        80 ----e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~----------------~~qR~~~-~~sp--Vn~vvl-hpn  135 (311)
T KOG0315|consen   80 ----EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL----------------SCQRNYQ-HNSP--VNTVVL-HPN  135 (311)
T ss_pred             ----eccCCceEEEEEeecCeEEEecCCCceEEEEeccCc----------------ccchhcc-CCCC--cceEEe-cCC
Confidence                8899999999999999999997 5999999999985                4545554 5544  999998 899


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-------CCCCCCCh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-------FPPLPDNA  231 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-------~~~~~~~~  231 (312)
                      ...|++|..+|.|++||+....+...+. .....|.++...|+|.+++.+..-|+.++|++-...       +..++.|.
T Consensus       136 QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~  215 (311)
T KOG0315|consen  136 QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN  215 (311)
T ss_pred             cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc
Confidence            9999999999999999999876666553 344689999999999999999999999999976532       23455677


Q ss_pred             hhhhhhhccCCCCceeEEecCCceEEEEEeccc----------Ccccee-EeecCCCccCCCCCCCeEEEeecCCCCC
Q 021484          232 EKIMKANKQGREDHSRITLTPDVIMHVLRLQRR----------QTLAYR-ERRYNAADFESDEEEGETYLLGFSDSDA  298 (312)
Q Consensus       232 ~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~  298 (312)
                      ..++.+. .+++..+|++.++|.+++||+....          +...|- .++.++.++...+.+..+-.|+.+.+.+
T Consensus       216 ~~il~C~-lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~  292 (311)
T KOG0315|consen  216 GHILRCL-LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE  292 (311)
T ss_pred             ceEEEEE-ECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCce
Confidence            7776665 7899999999999999999987654          223343 7888999999998888899999887764

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.1e-30  Score=213.98  Aligned_cols=218  Identities=16%  Similarity=0.179  Sum_probs=189.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |.+||..+..-.+.+.+.           ..||.+..|-+.. +.+++|+.|..|++|+..+++              .+
T Consensus        37 V~IWnyetqtmVksfeV~-----------~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~e--------------kV   90 (794)
T KOG0276|consen   37 VQIWNYETQTMVKSFEVS-----------EVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNTGE--------------KV   90 (794)
T ss_pred             eEEEecccceeeeeeeec-----------ccchhhheeeecc-ceEEEecCCceEEEEecccce--------------ee
Confidence            578998877666666654           3469999999987 899999999999999999987              33


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+ ..|.+-|.+++.+|...++.+++ |-+|++||-+++.               .+.++|.||..-  |.+++|.+.+
T Consensus        91 ~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w---------------a~~qtfeGH~Hy--VMqv~fnPkD  152 (794)
T KOG0276|consen   91 KTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW---------------ACEQTFEGHEHY--VMQVAFNPKD  152 (794)
T ss_pred             EEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCce---------------eeeeEEcCcceE--EEEEEecCCC
Confidence            333 89999999999999999888874 8899999998863               788999999966  9999995557


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC--CeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI--PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMK  236 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~  236 (312)
                      .+.+++++.|++|+||.+.+..+..++++|...|+++.+-+.|  ++|++|+.|.+|+|||.++.. +.++.+|...+ .
T Consensus       153 ~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv-s  231 (794)
T KOG0276|consen  153 PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV-S  231 (794)
T ss_pred             ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc-e
Confidence            8899999999999999999999999999999999999998755  689999999999999999876 58888898887 5


Q ss_pred             hhccCCCCceeEEecCCceEEEEEecc
Q 021484          237 ANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       237 ~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      .+.++++-.++++|+.||++|+|+..+
T Consensus       232 ~v~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  232 FVFFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             EEEecCCCcEEEEecCCccEEEecCcc
Confidence            666888889999999999999998654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.7e-30  Score=217.87  Aligned_cols=243  Identities=15%  Similarity=0.225  Sum_probs=192.7

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  105 (312)
                      +||...|.++....+| .+|++|+.|.++++|.+..+..          ...+.... .+|...|.+++++..+. +|++
T Consensus       362 ~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~----------~~~~~a~~-~gH~~svgava~~~~~asffvs  429 (775)
T KOG0319|consen  362 PGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCS----------KSLCVAQA-NGHTNSVGAVAGSKLGASFFVS  429 (775)
T ss_pred             eCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcc----------hhhhhhhh-cccccccceeeecccCccEEEE
Confidence            6899999999965666 7999999999999999954431          11122333 79999999999988774 8888


Q ss_pred             e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                      + .|.++++|++...+....       ........+...|...  |+++++ +|+.+++++|+.|.+.+||++.......
T Consensus       430 vS~D~tlK~W~l~~s~~~~~-------~~~~~~~~t~~aHdKd--IN~Vai-a~ndkLiAT~SqDktaKiW~le~~~l~~  499 (775)
T KOG0319|consen  430 VSQDCTLKLWDLPKSKETAF-------PIVLTCRYTERAHDKD--INCVAI-APNDKLIATGSQDKTAKIWDLEQLRLLG  499 (775)
T ss_pred             ecCCceEEEecCCCcccccc-------cceehhhHHHHhhccc--ccceEe-cCCCceEEecccccceeeecccCceEEE
Confidence            6 599999999976211100       0000122233456644  999999 9999999999999999999999999999


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      ++.+|+..|.+|.|+|..+.++|+|.|++|+||.+.+.. +.++.+|...++... +-.++..|+++++||.+++|++++
T Consensus       500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~-F~~~~~qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRAS-FIRNGKQLISAGADGLIKLWNIKT  578 (775)
T ss_pred             EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeee-eeeCCcEEEeccCCCcEEEEeccc
Confidence            999999999999999999999999999999999999987 588999999997665 667889999999999999999876


Q ss_pred             c---------Ccccee-EeecCCCccCCCCCCCeEEEee
Q 021484          264 R---------QTLAYR-ERRYNAADFESDEEEGETYLLG  292 (312)
Q Consensus       264 ~---------~~~~~~-~~~~~~~~~~~~~~~~~v~~~~  292 (312)
                      .         +..+|. ...+....+.++..++++.+|.
T Consensus       579 ~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  579 NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             hhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            4         233444 4455556667777777787774

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.1e-30  Score=199.93  Aligned_cols=198  Identities=13%  Similarity=0.208  Sum_probs=174.2

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||...|.+++|-|.| ..+++++.|.+|+.|++.++.              |.+.+ .+|.+.|..++.+.||.+++++
T Consensus       190 ~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~--------------cv~t~-~~h~ewvr~v~v~~DGti~As~  253 (406)
T KOG0295|consen  190 IGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGY--------------CVKTF-PGHSEWVRMVRVNQDGTIIASC  253 (406)
T ss_pred             cCcccceeeEEEEecC-CeeeecccccceeEEecccce--------------eEEec-cCchHhEEEEEecCCeeEEEec
Confidence            3688999999999999 899999999999999999997              55555 8899999999999999999997


Q ss_pred             c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC---------------CCEEEEeccCc
Q 021484          107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---------------DEYVMSGSDCG  170 (312)
Q Consensus       107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~---------------~~~l~~~~~dg  170 (312)
                      + |.+|++|-+.++                .+...++.|..+  |.+++| .|.               ++++.+++.|+
T Consensus       254 s~dqtl~vW~~~t~----------------~~k~~lR~hEh~--vEci~w-ap~~~~~~i~~at~~~~~~~~l~s~SrDk  314 (406)
T KOG0295|consen  254 SNDQTLRVWVVATK----------------QCKAELREHEHP--VECIAW-APESSYPSISEATGSTNGGQVLGSGSRDK  314 (406)
T ss_pred             CCCceEEEEEeccc----------------hhhhhhhccccc--eEEEEe-cccccCcchhhccCCCCCccEEEeecccc
Confidence            4 999999999887                677888899877  999998 342               36999999999


Q ss_pred             eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEE
Q 021484          171 HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRIT  249 (312)
Q Consensus       171 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s  249 (312)
                      +|++||+.++.++.++.+|...|..++|+|.|+||+++..|+++++||++.+.. .++..|..-+ ....++.+..++++
T Consensus       315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfv-t~lDfh~~~p~VvT  393 (406)
T KOG0295|consen  315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFV-TSLDFHKTAPYVVT  393 (406)
T ss_pred             eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCccee-EEEecCCCCceEEe
Confidence            999999999999999999999999999999999999999999999999998864 5555444444 44456667779999


Q ss_pred             ecCCceEEEEE
Q 021484          250 LTPDVIMHVLR  260 (312)
Q Consensus       250 ~~~d~~i~i~~  260 (312)
                      |+-|..+++|.
T Consensus       394 GsVdqt~KvwE  404 (406)
T KOG0295|consen  394 GSVDQTVKVWE  404 (406)
T ss_pred             ccccceeeeee
Confidence            99999999996

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=1e-29  Score=204.35  Aligned_cols=213  Identities=13%  Similarity=0.180  Sum_probs=174.9

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCC---------------------Ccc-----cccccc
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT---------------------PVD-----TFCPRH   82 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------------~~~-----~~~~~~   82 (312)
                      |++||.++.|+..| .+|++++.|+++.+||..++.+........                     .+.     .-.+..
T Consensus       275 HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~  353 (524)
T KOG0273|consen  275 HKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVK  353 (524)
T ss_pred             cCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcce
Confidence            89999999999999 899999999999999998776543221100                     000     001222


Q ss_pred             cccCCCccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-
Q 021484           83 LIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-  160 (312)
Q Consensus        83 ~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-  160 (312)
                      .+.+|.+.|.++.|+|.|.+|++++ |++++||.....                .....+.+|...  |..+.| +|.+ 
T Consensus       354 t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~----------------~~~~~l~~Hske--i~t~~w-sp~g~  414 (524)
T KOG0273|consen  354 TFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS----------------NSVHDLQAHSKE--IYTIKW-SPTGP  414 (524)
T ss_pred             eeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC----------------cchhhhhhhccc--eeeEee-cCCCC
Confidence            2367999999999999999999975 999999998776                677788888865  888988 7764 


Q ss_pred             --------CEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChh
Q 021484          161 --------EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAE  232 (312)
Q Consensus       161 --------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~  232 (312)
                              -.+++++.|++|++||+..+.++..|..|..+|++++|+|+|+++|+|+.||.|.+|+.+++++..-.....
T Consensus       415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~  494 (524)
T KOG0273|consen  415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG  494 (524)
T ss_pred             ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence                    478999999999999999999999999999999999999999999999999999999999998743333344


Q ss_pred             hhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          233 KIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       233 ~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      .+ -...|..++..+...-.|+.+.+.|++
T Consensus       495 ~I-fel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  495 GI-FELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             eE-EEEEEcCCCCEEEEEecCCCceEEEec
Confidence            44 445577788999999999999999875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=8.3e-30  Score=215.00  Aligned_cols=207  Identities=15%  Similarity=0.173  Sum_probs=181.9

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN  107 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  107 (312)
                      ||...|.+++++..+..+|++++.|+++++|++...+.     ...++ .+........|...|.+++.+|+.+++|+++
T Consensus       409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~-----~~~~~-~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S  482 (775)
T KOG0319|consen  409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE-----TAFPI-VLTCRYTERAHDKDINCVAIAPNDKLIATGS  482 (775)
T ss_pred             ccccccceeeecccCccEEEEecCCceEEEecCCCccc-----ccccc-eehhhHHHHhhcccccceEecCCCceEEecc
Confidence            69999999999998889999999999999999987331     11111 1222233367999999999999999999985


Q ss_pred             -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                       |++.+||+++..                ....++.||+..  |.+|.| ++..+.+++++.|++|+||.+.+..+++++
T Consensus       483 qDktaKiW~le~~----------------~l~~vLsGH~RG--vw~V~F-s~~dq~laT~SgD~TvKIW~is~fSClkT~  543 (775)
T KOG0319|consen  483 QDKTAKIWDLEQL----------------RLLGVLSGHTRG--VWCVSF-SKNDQLLATCSGDKTVKIWSISTFSCLKTF  543 (775)
T ss_pred             cccceeeecccCc----------------eEEEEeeCCccc--eEEEEe-ccccceeEeccCCceEEEEEeccceeeeee
Confidence             999999999977                788999999977  999999 999999999999999999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      .+|+..|..+.|-.++..|++++.||.|++|++.+.+ ..++.+|.+.+..+. .++....+++++.|+.+.+|.
T Consensus       544 eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~-~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  544 EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALS-VSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEe-ecCccceeEecCCCeEEEEee
Confidence            9999999999999999999999999999999999886 588889999997776 455566899999999999995

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.7e-28  Score=182.70  Aligned_cols=198  Identities=15%  Similarity=0.227  Sum_probs=165.8

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      +|+..|.+++|+|.| ++|++++.|.++.||.-..++.             .....+.+|...|.+++|+++|.+||++ 
T Consensus        59 ~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~ef-------------ecv~~lEGHEnEVK~Vaws~sG~~LATCS  124 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDGEF-------------ECVATLEGHENEVKCVAWSASGNYLATCS  124 (312)
T ss_pred             cchheeeeeeecCCC-cEEEEeeccceEEEeecCCCce-------------eEEeeeeccccceeEEEEcCCCCEEEEee
Confidence            589999999999999 8999999999999999776542             2334448999999999999999999997 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc---CCeeE
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---GGKLV  183 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~---~~~~~  183 (312)
                      .|+.|.||.+...             ....+...++.|...  |..+.| +|...+|++++.|.+|++|.-.   .-+++
T Consensus       125 RDKSVWiWe~ded-------------dEfec~aVL~~HtqD--VK~V~W-HPt~dlL~S~SYDnTIk~~~~~~dddW~c~  188 (312)
T KOG0645|consen  125 RDKSVWIWEIDED-------------DEFECIAVLQEHTQD--VKHVIW-HPTEDLLFSCSYDNTIKVYRDEDDDDWECV  188 (312)
T ss_pred             CCCeEEEEEecCC-------------CcEEEEeeecccccc--ccEEEE-cCCcceeEEeccCCeEEEEeecCCCCeeEE
Confidence            5999999998743             122677888999987  999999 8999999999999999999865   34788


Q ss_pred             EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCC-ChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          184 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       184 ~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      .++.+|...|.+++|+|.|..|++++.|++++||.....    ++. |...++... |.  ...+++++.|+.++++.-.
T Consensus       189 ~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~-W~--~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  189 QTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVP-WD--NGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             EEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeee-ec--ccceEeccCCCEEEEEEec
Confidence            999999999999999999999999999999999986632    222 334444344 44  5689999999999999744

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.1e-28  Score=209.67  Aligned_cols=212  Identities=10%  Similarity=0.121  Sum_probs=164.2

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s  105 (312)
                      .||.++|++++|+|.++++|++|+.|++|++||+.+......  ..      .+...+.+|...|.+++|+|++ .+|++
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--~~------~~l~~L~gH~~~V~~l~f~P~~~~iLaS  143 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN--IS------DPIVHLQGHTKKVGIVSFHPSAMNVLAS  143 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--cC------cceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence            479999999999994337999999999999999986532110  00      1122237899999999999986 58888


Q ss_pred             e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                      + .|+.|++||+.++                +....+.+|...  |.+++| +|++.+|++++.|+.|++||+++++.+.
T Consensus       144 gs~DgtVrIWDl~tg----------------~~~~~l~~h~~~--V~sla~-spdG~lLatgs~Dg~IrIwD~rsg~~v~  204 (493)
T PTZ00421        144 AGADMVVNVWDVERG----------------KAVEVIKCHSDQ--ITSLEW-NLDGSLLCTTSKDKKLNIIDPRDGTIVS  204 (493)
T ss_pred             EeCCCEEEEEECCCC----------------eEEEEEcCCCCc--eEEEEE-ECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence            6 5999999999887                677778888866  999999 8999999999999999999999999999


Q ss_pred             EeecCccc-eEEEEEcCCCCeEEEEe----CCCcEEEccCCCCC-CC-CCCCChhhhhhhhccCCCCceeEEec-CCceE
Q 021484          185 LMVGDRHV-VNQLEPHPHIPMFATCG----IEKTVKLWAPMPTD-FP-PLPDNAEKIMKANKQGREDHSRITLT-PDVIM  256 (312)
Q Consensus       185 ~~~~~~~~-v~~~~~~p~~~~l~t~~----~d~~i~iwd~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i  256 (312)
                      .+.+|.+. +..+.|.+++..+++++    .|+.|++||++... .. ....+.........+.+++.++++++ .|+.|
T Consensus       205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I  284 (493)
T PTZ00421        205 SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI  284 (493)
T ss_pred             EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence            99888764 45678999988877665    47999999998653 21 11112222223334567777888777 59999


Q ss_pred             EEEEecccC
Q 021484          257 HVLRLQRRQ  265 (312)
Q Consensus       257 ~i~~~~~~~  265 (312)
                      ++|++....
T Consensus       285 riwdl~~~~  293 (493)
T PTZ00421        285 RCFELMNER  293 (493)
T ss_pred             EEEEeeCCc
Confidence            999998764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=5.3e-30  Score=206.59  Aligned_cols=241  Identities=12%  Similarity=0.198  Sum_probs=195.8

Q ss_pred             CcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021484           24 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  103 (312)
Q Consensus        24 ~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  103 (312)
                      ..|+||+..|+++.|.|....+|++++.|+.|+||++....        .     |+..+ .+|..+|..++|+.+|..+
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--------~-----~lrtf-~gH~k~Vrd~~~s~~g~~f  273 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--------R-----CLRTF-KGHRKPVRDASFNNCGTSF  273 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--------c-----eehhh-hcchhhhhhhhccccCCee
Confidence            34579999999999999433899999999999999998732        1     33333 8999999999999999977


Q ss_pred             EEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCe
Q 021484          104 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       104 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~  181 (312)
                      .+++ |+.|++||++++                ++...|....   .+.++.| .|++ +.+++|+.|+.|+-||+++++
T Consensus       274 LS~sfD~~lKlwDtETG----------------~~~~~f~~~~---~~~cvkf-~pd~~n~fl~G~sd~ki~~wDiRs~k  333 (503)
T KOG0282|consen  274 LSASFDRFLKLWDTETG----------------QVLSRFHLDK---VPTCVKF-HPDNQNIFLVGGSDKKIRQWDIRSGK  333 (503)
T ss_pred             eeeecceeeeeeccccc----------------eEEEEEecCC---Cceeeec-CCCCCcEEEEecCCCcEEEEeccchH
Confidence            7765 999999999998                6777776433   3899999 7877 889999999999999999999


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCC-CChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       182 ~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      .++.+..|-+.|..+.|-|+|+.+++.+.|++++||+.+......+. ......+.+...++.+.++++-+.|+.+.++.
T Consensus       334 vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs  413 (503)
T KOG0282|consen  334 VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS  413 (503)
T ss_pred             HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence            99999999999999999999999999999999999998877543222 22222334445677888999999999999887


Q ss_pred             eccc------------Ccc---ceeEeecCCCccCCCCCCCeEEEeecCCCCC
Q 021484          261 LQRR------------QTL---AYRERRYNAADFESDEEEGETYLLGFSDSDA  298 (312)
Q Consensus       261 ~~~~------------~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  298 (312)
                      +...            ...   ....++|++..+.+++.+|.+++||+..--.
T Consensus       414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl  466 (503)
T KOG0282|consen  414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL  466 (503)
T ss_pred             cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh
Confidence            5332            111   2237899999999999999999999865433

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.6e-29  Score=213.99  Aligned_cols=220  Identities=17%  Similarity=0.296  Sum_probs=185.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||.|=+...           .++.+|.++|..++|||+. -+|++|+.|.+|++|+..+.+              |.
T Consensus        33 IQlWDYRM~tli-----------~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rr--------------cl   86 (1202)
T KOG0292|consen   33 IQLWDYRMGTLI-----------DRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRR--------------CL   86 (1202)
T ss_pred             eeeehhhhhhHH-----------hhhhccCCccceeeecCCC-CeEEecCCccEEEEEecccce--------------eh
Confidence            567777644321           1234599999999999998 599999999999999999988              55


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+ .+|-+-|..+.|++.-..++++ .|.+|+||+-.+.                +++..++||..-  |.|..| +|.
T Consensus        87 ftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr----------------~~iavltGHnHY--VMcAqF-hpt  146 (1202)
T KOG0292|consen   87 FTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR----------------KCIAVLTGHNHY--VMCAQF-HPT  146 (1202)
T ss_pred             hhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCC----------------ceEEEEecCceE--EEeecc-CCc
Confidence            555 8999999999999998888887 5999999999988                899999999966  999999 899


Q ss_pred             CCEEEEeccCceEEEEeccC--------C---------------------eeEEEeecCccceEEEEEcCCCCeEEEEeC
Q 021484          160 DEYVMSGSDCGHLFIWKKKG--------G---------------------KLVRLMVGDRHVVNQLEPHPHIPMFATCGI  210 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~--------~---------------------~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~  210 (312)
                      ...+++++.|.+|+|||+..        +                     -....+.+|...|+-++|+|.-+.+++|+.
T Consensus       147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D  226 (1202)
T KOG0292|consen  147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD  226 (1202)
T ss_pred             cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence            99999999999999999641        1                     012356789999999999999999999999


Q ss_pred             CCcEEEccCCCCC---CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021484          211 EKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       211 d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      |+.|++|.....+   ..+..+|.+.+ ....+++...++++.+.|+.+++||+..+...
T Consensus       227 DRqVKlWrmnetKaWEvDtcrgH~nnV-ssvlfhp~q~lIlSnsEDksirVwDm~kRt~v  285 (1202)
T KOG0292|consen  227 DRQVKLWRMNETKAWEVDTCRGHYNNV-SSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV  285 (1202)
T ss_pred             cceeeEEEeccccceeehhhhcccCCc-ceEEecCccceeEecCCCccEEEEecccccce
Confidence            9999999987654   46677888888 44557888899999999999999998776443

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1.2e-27  Score=207.29  Aligned_cols=211  Identities=11%  Similarity=0.080  Sum_probs=156.8

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  105 (312)
                      .+|..+|.+++|+|+.+++|++|+.|++|++||+.++.....     .+.  .+...+.+|...|.+++|+|++. +|++
T Consensus        71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-----~i~--~p~~~L~gH~~~V~sVaf~P~g~~iLaS  143 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-----EIK--DPQCILKGHKKKISIIDWNPMNYYIMCS  143 (568)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----ccc--cceEEeecCCCcEEEEEECCCCCeEEEE
Confidence            479999999999997548999999999999999986431000     000  11122378999999999999987 4566


Q ss_pred             e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                      + .|+.|++||++++                +....+. +...  |.+++| +++|.+|++++.|+.|++||+++++.+.
T Consensus       144 gS~DgtIrIWDl~tg----------------~~~~~i~-~~~~--V~Slsw-spdG~lLat~s~D~~IrIwD~Rsg~~i~  203 (568)
T PTZ00420        144 SGFDSFVNIWDIENE----------------KRAFQIN-MPKK--LSSLKW-NIKGNLLSGTCVGKHMHIIDPRKQEIAS  203 (568)
T ss_pred             EeCCCeEEEEECCCC----------------cEEEEEe-cCCc--EEEEEE-CCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence            5 5999999999886                4444444 3433  999999 9999999999999999999999999999


Q ss_pred             EeecCccceEE-----EEEcCCCCeEEEEeCCC----cEEEccCCCC-CCCCCCCC--hhhhhhhhccCCCCceeEEecC
Q 021484          185 LMVGDRHVVNQ-----LEPHPHIPMFATCGIEK----TVKLWAPMPT-DFPPLPDN--AEKIMKANKQGREDHSRITLTP  252 (312)
Q Consensus       185 ~~~~~~~~v~~-----~~~~p~~~~l~t~~~d~----~i~iwd~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~  252 (312)
                      .+.+|.+.+..     ..|++++.++++++.|+    +|+|||++.. .......+  ....+...+...++.++++|..
T Consensus       204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG  283 (568)
T PTZ00420        204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG  283 (568)
T ss_pred             EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence            99999876533     23468989999988774    7999999853 32211111  1122222223446778999999


Q ss_pred             CceEEEEEeccc
Q 021484          253 DVIMHVLRLQRR  264 (312)
Q Consensus       253 d~~i~i~~~~~~  264 (312)
                      |+.+++|++...
T Consensus       284 D~tIr~~e~~~~  295 (568)
T PTZ00420        284 DGNCRYYQHSLG  295 (568)
T ss_pred             CCeEEEEEccCC
Confidence            999999998654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.7e-29  Score=193.71  Aligned_cols=236  Identities=13%  Similarity=0.200  Sum_probs=197.9

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||+.+|+.+-|+|.. .+.++++.|++|++||..+++              +...+ .+|...+..|+|+..|++|+++
T Consensus       105 ~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~--------------~e~~L-rGHt~sv~di~~~a~Gk~l~tc  168 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGE--------------LERSL-RGHTDSVFDISFDASGKYLATC  168 (406)
T ss_pred             hccccceeeeeeccCc-eEEEEecCCceEEEEEccchh--------------hhhhh-hccccceeEEEEecCccEEEec
Confidence            4799999999999988 688999999999999999998              33333 8999999999999999999997


Q ss_pred             c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                      + |-.+++||..+..               ++++.+.+|...  |.+++| -|.|.++++++.|.+|+.|++.++.++.+
T Consensus       169 SsDl~~~LWd~~~~~---------------~c~ks~~gh~h~--vS~V~f-~P~gd~ilS~srD~tik~We~~tg~cv~t  230 (406)
T KOG0295|consen  169 SSDLSAKLWDFDTFF---------------RCIKSLIGHEHG--VSSVFF-LPLGDHILSCSRDNTIKAWECDTGYCVKT  230 (406)
T ss_pred             CCccchhheeHHHHH---------------HHHHHhcCcccc--eeeEEE-EecCCeeeecccccceeEEecccceeEEe
Confidence            5 7779999997631               678888899877  999999 68899999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCC---------------CCceeEE
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR---------------EDHSRIT  249 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~l~s  249 (312)
                      +.+|...|..+..+.+|.++|+++.|.+|++|-+.+... ..+.+|...+ .+..|.+               .+.++.+
T Consensus       231 ~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v-Eci~wap~~~~~~i~~at~~~~~~~~l~s  309 (406)
T KOG0295|consen  231 FPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV-ECIAWAPESSYPSISEATGSTNGGQVLGS  309 (406)
T ss_pred             ccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce-EEEEecccccCcchhhccCCCCCccEEEe
Confidence            999999999999999999999999999999999988742 3444444333 2222211               1358999


Q ss_pred             ecCCceEEEEEecccCcc---------cee-EeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          250 LTPDVIMHVLRLQRRQTL---------AYR-ERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       250 ~~~d~~i~i~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      ++.|++|++||+..+..+         +.. .+.|.+.++.+..|+..+-+||+....
T Consensus       310 ~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~  367 (406)
T KOG0295|consen  310 GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ  367 (406)
T ss_pred             ecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence            999999999999876322         111 678889999999999999999987754

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=9.4e-28  Score=188.31  Aligned_cols=251  Identities=11%  Similarity=0.172  Sum_probs=192.4

Q ss_pred             CCccceEEEEEcCCCC--cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           28 MNSIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      ||.++|.+++|.-.++  ..|++++.|.++++|.++.++....          +... ..+|...|.++...++|..+++
T Consensus       142 Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~----------~~~~-~~GHk~~V~sVsv~~sgtr~~S  210 (423)
T KOG0313|consen  142 GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK----------ALKV-CRGHKRSVDSVSVDSSGTRFCS  210 (423)
T ss_pred             cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh----------HHhH-hcccccceeEEEecCCCCeEEe
Confidence            5899999888865332  3699999999999999987763211          1111 1499999999999999999999


Q ss_pred             ec-CCcEEEEEcCCCcCCCCC---------cCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEE
Q 021484          106 YN-DELVYLFEKNMGLGPSPL---------SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW  175 (312)
Q Consensus       106 ~~-d~~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iw  175 (312)
                      ++ |..|.+|+..+......-         ...........++..+.||..+  |.++.| ++ ...+++++.|.+|+.|
T Consensus       211 gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~--Vs~V~w-~d-~~v~yS~SwDHTIk~W  286 (423)
T KOG0313|consen  211 GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP--VSSVVW-SD-ATVIYSVSWDHTIKVW  286 (423)
T ss_pred             ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc--eeeEEE-cC-CCceEeecccceEEEE
Confidence            86 999999994332211000         0011112334567788999977  999999 55 7789999999999999


Q ss_pred             eccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC----CCCCCCChhhhhhhhccCC-CCceeEEe
Q 021484          176 KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGR-EDHSRITL  250 (312)
Q Consensus       176 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~l~s~  250 (312)
                      |+.++..+..+.+ ...++++..+|..++|++|+.|..|++||++++.    ..++.+|.+.+-.+. |++ +...++++
T Consensus       287 Dletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvk-wsp~~~~~~~S~  364 (423)
T KOG0313|consen  287 DLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVK-WSPTNEFQLVSG  364 (423)
T ss_pred             Eeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhee-cCCCCceEEEEE
Confidence            9999999888874 4578999999999999999999999999999874    356778999775554 555 67889999


Q ss_pred             cCCceEEEEEecccCccceeEeecCCCccCCCCCCCeEEEeecCCCCCCCCCCCc
Q 021484          251 TPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGN  305 (312)
Q Consensus       251 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  305 (312)
                      +.|+++++||++....+        ..++..|+|.  |+.+|..++.--..+|+|
T Consensus       365 S~D~t~klWDvRS~k~p--------lydI~~h~DK--vl~vdW~~~~~IvSGGaD  409 (423)
T KOG0313|consen  365 SYDNTVKLWDVRSTKAP--------LYDIAGHNDK--VLSVDWNEGGLIVSGGAD  409 (423)
T ss_pred             ecCCeEEEEEeccCCCc--------ceeeccCCce--EEEEeccCCceEEeccCc
Confidence            99999999999988655        3467777777  999998887544444433

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.5e-28  Score=178.91  Aligned_cols=232  Identities=16%  Similarity=0.250  Sum_probs=183.8

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      .|.++|.++.|+-+| ++.++++.|.+|++|+...+.+              .+.. .+|...|..++.+.+...++++ 
T Consensus        15 ~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~l--------------iktY-sghG~EVlD~~~s~Dnskf~s~G   78 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGAL--------------IKTY-SGHGHEVLDAALSSDNSKFASCG   78 (307)
T ss_pred             ccccceEEEEEccCC-CEEEEcCCCceEEeecccccce--------------eeee-cCCCceeeeccccccccccccCC
Confidence            378899999999999 8999999999999999998873              3333 8899999999999999888886 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC--CeeEE
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG--GKLVR  184 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~--~~~~~  184 (312)
                      .|..+.+||+.++                +..+.+.+|...  |..+.| +.+...+++|+.|..+++||.++  .++++
T Consensus        79 gDk~v~vwDV~TG----------------kv~Rr~rgH~aq--VNtV~f-NeesSVv~SgsfD~s~r~wDCRS~s~ePiQ  139 (307)
T KOG0316|consen   79 GDKAVQVWDVNTG----------------KVDRRFRGHLAQ--VNTVRF-NEESSVVASGSFDSSVRLWDCRSRSFEPIQ  139 (307)
T ss_pred             CCceEEEEEcccC----------------eeeeecccccce--eeEEEe-cCcceEEEeccccceeEEEEcccCCCCccc
Confidence            6999999999999                899999999977  999999 89999999999999999999764  56778


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      .+......|.++..  .+..+++|+.||++|.||++.+.+..  ......+.+..++++++..++++-|+++++.|-.++
T Consensus       140 ildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG  215 (307)
T KOG0316|consen  140 ILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSS--DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG  215 (307)
T ss_pred             hhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeeh--hhcCCcceeEEecCCCCEEEEeeccceeeecccchh
Confidence            77766777877776  55678888888888888888776522  122333456667788888888888888888885443


Q ss_pred             Ccc---------cee---EeecCCCccCCCCCCCeEEEeecCCCCC
Q 021484          265 QTL---------AYR---ERRYNAADFESDEEEGETYLLGFSDSDA  298 (312)
Q Consensus       265 ~~~---------~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~  298 (312)
                      ..+         .|.   ........+.++.++|.||+||+.++..
T Consensus       216 klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~  261 (307)
T KOG0316|consen  216 KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ  261 (307)
T ss_pred             HHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee
Confidence            221         221   2233345566778888888888877643

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=3e-28  Score=189.91  Aligned_cols=218  Identities=18%  Similarity=0.289  Sum_probs=183.9

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+|||+.+++....+           +||...|..+++++.. -++.+++.|+.|+.||+...+.              .
T Consensus       175 ikIwDlatg~Lkltl-----------tGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nkv--------------I  228 (460)
T KOG0285|consen  175 IKIWDLATGQLKLTL-----------TGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNKV--------------I  228 (460)
T ss_pred             eEEEEcccCeEEEee-----------cchhheeeeeeecccC-ceEEEecCCCeeEEEechhhhh--------------H
Confidence            589999987643333           2478889999999998 5999999999999999998773              2


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      +.+ .+|-..|.+++.+|.-..|+++ .|..+++||+++.                ..+..+.||...  |.++.+ .|.
T Consensus       229 R~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr----------------~~V~~l~GH~~~--V~~V~~-~~~  288 (460)
T KOG0285|consen  229 RHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR----------------ASVHVLSGHTNP--VASVMC-QPT  288 (460)
T ss_pred             HHh-ccccceeEEEeccccceeEEecCCcceEEEeeeccc----------------ceEEEecCCCCc--ceeEEe-ecC
Confidence            333 7899999999999999999996 6999999999998                788999999977  999998 888


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN  238 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~  238 (312)
                      ...+++|+.|++|++||++.|+....+..|...|.+++.+|....||+++.| .|+-|++..+.. ..+.+|...+..+.
T Consensus       289 dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~  367 (460)
T KOG0285|consen  289 DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLS  367 (460)
T ss_pred             CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeee
Confidence            8889999999999999999999999999999999999999999999999876 799999887764 55665555443322


Q ss_pred             ccCCCCceeEEecCCceEEEEEecccCcc
Q 021484          239 KQGREDHSRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       239 ~~~~~~~~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                        ..++..+++|+.++.+..||.+.+.+-
T Consensus       368 --~nsD~v~~~G~dng~~~fwdwksg~ny  394 (460)
T KOG0285|consen  368 --VNSDGVLVSGGDNGSIMFWDWKSGHNY  394 (460)
T ss_pred             --eccCceEEEcCCceEEEEEecCcCccc
Confidence              235678999999999999998766443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=2.3e-28  Score=187.38  Aligned_cols=221  Identities=14%  Similarity=0.237  Sum_probs=172.6

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----eecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC----HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  103 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  103 (312)
                      .|+.++.+.+|+|+| .++|+|+.|.+|+|.|++.-    +....+..+..-+- .+-..+..|.+.|..+.|+|...+|
T Consensus       110 ~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~h-PvIRTlYDH~devn~l~FHPre~IL  187 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARH-PVIRTLYDHVDEVNDLDFHPRETIL  187 (430)
T ss_pred             ecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCC-ceEeehhhccCcccceeecchhheE
Confidence            589999999999999 89999999999999998721    11111111111110 1111227899999999999999999


Q ss_pred             EEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021484          104 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  182 (312)
Q Consensus       104 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~  182 (312)
                      +++ .|++|++||....                ...+.++......+|.+++| +|.|.+|+.|.+...+++||+.+-++
T Consensus       188 iS~srD~tvKlFDfsK~----------------saKrA~K~~qd~~~vrsiSf-HPsGefllvgTdHp~~rlYdv~T~Qc  250 (430)
T KOG0640|consen  188 ISGSRDNTVKLFDFSKT----------------SAKRAFKVFQDTEPVRSISF-HPSGEFLLVGTDHPTLRLYDVNTYQC  250 (430)
T ss_pred             EeccCCCeEEEEecccH----------------HHHHHHHHhhccceeeeEee-cCCCceEEEecCCCceeEEeccceeE
Confidence            997 4999999999764                23333333333345999999 89999999999999999999999888


Q ss_pred             EEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCC-CChhhhhhhhccCCCCceeEEecCCceEE
Q 021484          183 VRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMH  257 (312)
Q Consensus       183 ~~~~---~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  257 (312)
                      ...-   ..|++.|+++.+++.+++.+|++.||.|++||--+.+ +.++. .|.+..+..+.+..++.++++.+.|+.++
T Consensus       251 fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vk  330 (430)
T KOG0640|consen  251 FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVK  330 (430)
T ss_pred             eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceee
Confidence            6544   3688999999999999999999999999999965544 44443 46666677777888999999999999999


Q ss_pred             EEEecccCcc
Q 021484          258 VLRLQRRQTL  267 (312)
Q Consensus       258 i~~~~~~~~~  267 (312)
                      +|.+.++..+
T Consensus       331 LWEi~t~R~l  340 (430)
T KOG0640|consen  331 LWEISTGRML  340 (430)
T ss_pred             eeeecCCceE
Confidence            9999876544

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.4e-28  Score=189.86  Aligned_cols=243  Identities=14%  Similarity=0.184  Sum_probs=190.3

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN  107 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  107 (312)
                      |.+..+.|..|+|++ ++|++|+.||.|.+||..++++.....       +.....+..+..+|.++.|+.+.++||+++
T Consensus       211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLk-------YQAqd~fMMmd~aVlci~FSRDsEMlAsGs  282 (508)
T KOG0275|consen  211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLK-------YQAQDNFMMMDDAVLCISFSRDSEMLASGS  282 (508)
T ss_pred             ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhh-------hhhhcceeecccceEEEeecccHHHhhccC
Confidence            456778999999999 899999999999999999998543211       111112245788999999999999999985


Q ss_pred             -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                       ||.|++|.++++                .+++.|. .|...  |+++.| +.++..+++++.|.++++.-+++|++++.
T Consensus       283 qDGkIKvWri~tG----------------~ClRrFdrAHtkG--vt~l~F-SrD~SqiLS~sfD~tvRiHGlKSGK~LKE  343 (508)
T KOG0275|consen  283 QDGKIKVWRIETG----------------QCLRRFDRAHTKG--VTCLSF-SRDNSQILSASFDQTVRIHGLKSGKCLKE  343 (508)
T ss_pred             cCCcEEEEEEecc----------------hHHHHhhhhhccC--eeEEEE-ccCcchhhcccccceEEEeccccchhHHH
Confidence             999999999999                7888887 78766  999999 99999999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCC--ChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      +++|..-|+.+.|.++|..+++++.||+|++|+..+.+ +.++..  ..-++......+.+...++.+...+++.+.+++
T Consensus       344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q  423 (508)
T KOG0275|consen  344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ  423 (508)
T ss_pred             hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence            99999999999999999999999999999999998776 344432  222333333344466677788888888888765


Q ss_pred             ccC----------cccee--EeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          263 RRQ----------TLAYR--ERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       263 ~~~----------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      ..-          ...++  ..+|.+.-+..-.+++.+|.+....|.
T Consensus       424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~  470 (508)
T KOG0275|consen  424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK  470 (508)
T ss_pred             ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc
Confidence            321          11122  445555555555667777877766654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=8.8e-27  Score=215.17  Aligned_cols=198  Identities=15%  Similarity=0.173  Sum_probs=161.0

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEe-c
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-N  107 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~  107 (312)
                      ...|.+++|+|....+|++++.||+|++||+.+++.              ...+ .+|...|++++|+| ++.+|+++ .
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~--------------~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~  596 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL--------------VTEM-KEHEKRVWSIDYSSADPTLLASGSD  596 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE--------------EEEe-cCCCCCEEEEEEcCCCCCEEEEEcC
Confidence            457999999986558999999999999999988762              2222 78999999999997 67888887 5


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-eEEEe
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLM  186 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~  186 (312)
                      |+.|++||+.++                .....+..+ ..  +.++.|.++++.+|++|+.||.|++||+++.+ ++..+
T Consensus       597 Dg~v~iWd~~~~----------------~~~~~~~~~-~~--v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~  657 (793)
T PLN00181        597 DGSVKLWSINQG----------------VSIGTIKTK-AN--ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM  657 (793)
T ss_pred             CCEEEEEECCCC----------------cEEEEEecC-CC--eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe
Confidence            999999999876                566666544 33  88999856679999999999999999998765 56778


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC-------CCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEE
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-------DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL  259 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~  259 (312)
                      .+|...|.++.|. ++.++++++.|++|++||+...       .+..+.+|...+ ....+++++.++++++.|+.+++|
T Consensus       658 ~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i-~~v~~s~~~~~lasgs~D~~v~iw  735 (793)
T PLN00181        658 IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK-NFVGLSVSDGYIATGSETNEVFVY  735 (793)
T ss_pred             cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe-eEEEEcCCCCEEEEEeCCCEEEEE
Confidence            8999999999997 6788999999999999998743       234555565544 344567788899999999999999


Q ss_pred             Eecc
Q 021484          260 RLQR  263 (312)
Q Consensus       260 ~~~~  263 (312)
                      +...
T Consensus       736 ~~~~  739 (793)
T PLN00181        736 HKAF  739 (793)
T ss_pred             ECCC
Confidence            9653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=6.9e-29  Score=200.18  Aligned_cols=214  Identities=13%  Similarity=0.184  Sum_probs=170.4

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+||++....  .+++.        |.||+.+|.+++|++++ ..|++++.|+.|++||+++|++...            
T Consensus       239 vklW~vy~~~--~~lrt--------f~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtETG~~~~~------------  295 (503)
T KOG0282|consen  239 VKLWNVYDDR--RCLRT--------FKGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTETGQVLSR------------  295 (503)
T ss_pred             EEEEEEecCc--ceehh--------hhcchhhhhhhhccccC-CeeeeeecceeeeeeccccceEEEE------------
Confidence            5788887632  22221        24699999999999999 8999999999999999999985322            


Q ss_pred             cccccCCCccEEEEEEccCC-CeEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           81 RHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                        +  .....++++.|+|++ +.+++ ++|+.|+.||++++                +.++.+..|...  |..+.| -+
T Consensus       296 --f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----------------kvvqeYd~hLg~--i~~i~F-~~  352 (503)
T KOG0282|consen  296 --F--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----------------KVVQEYDRHLGA--ILDITF-VD  352 (503)
T ss_pred             --E--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch----------------HHHHHHHhhhhh--eeeeEE-cc
Confidence              1  124567899999999 55555 47999999999998                788888888866  999999 79


Q ss_pred             CCCEEEEeccCceEEEEeccCCeeEE----------------------------------------------EeecCc--
Q 021484          159 NDEYVMSGSDCGHLFIWKKKGGKLVR----------------------------------------------LMVGDR--  190 (312)
Q Consensus       159 ~~~~l~~~~~dg~v~iwd~~~~~~~~----------------------------------------------~~~~~~--  190 (312)
                      ++.++++.++|+.++||+.+.+.++.                                              .+++|.  
T Consensus       353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va  432 (503)
T KOG0282|consen  353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA  432 (503)
T ss_pred             CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence            99999999999999999976543221                                              333454  


Q ss_pred             cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          191 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       191 ~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      +.-..+.|||+|.+|++|+.||.+.+||.++.++ ..+..|...++...|-..+...+++++-+|.|++|+
T Consensus       433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            2345689999999999999999999999998875 667777666666664444888999999999999995

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.7e-27  Score=174.83  Aligned_cols=202  Identities=14%  Similarity=0.169  Sum_probs=173.0

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      +||...|..++.+.++ ..|++++.|..+.+||+.++++.              ..+ .+|...|..++|+.+...++++
T Consensus        56 sghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGkv~--------------Rr~-rgH~aqVNtV~fNeesSVv~Sg  119 (307)
T KOG0316|consen   56 SGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGKVD--------------RRF-RGHLAQVNTVRFNEESSVVASG  119 (307)
T ss_pred             cCCCceeeeccccccc-cccccCCCCceEEEEEcccCeee--------------eec-ccccceeeEEEecCcceEEEec
Confidence            5689999999999998 79999999999999999999832              222 8999999999999999999998


Q ss_pred             c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                      + |..+++||.++.              ..++++.+......  |.++..   .+..+++|+.||+++.||++.|+....
T Consensus       120 sfD~s~r~wDCRS~--------------s~ePiQildea~D~--V~Si~v---~~heIvaGS~DGtvRtydiR~G~l~sD  180 (307)
T KOG0316|consen  120 SFDSSVRLWDCRSR--------------SFEPIQILDEAKDG--VSSIDV---AEHEIVAGSVDGTVRTYDIRKGTLSSD  180 (307)
T ss_pred             cccceeEEEEcccC--------------CCCccchhhhhcCc--eeEEEe---cccEEEeeccCCcEEEEEeecceeehh
Confidence            6 999999999875              22677888777766  999876   578899999999999999999988776


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCC-CCceeEEecCCceEEEEEecc
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      ..+|  +|++++|+++++..+.++.|++|++.|-.++++ ..+.+|.+..++..+.-. ....+++++.||.+.+||+-.
T Consensus       181 y~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  181 YFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             hcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence            6644  799999999999999999999999999999985 778888887766654333 467889999999999999876


Q ss_pred             cC
Q 021484          264 RQ  265 (312)
Q Consensus       264 ~~  265 (312)
                      ..
T Consensus       259 ~~  260 (307)
T KOG0316|consen  259 ET  260 (307)
T ss_pred             ce
Confidence            53

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=2.1e-26  Score=187.99  Aligned_cols=217  Identities=21%  Similarity=0.343  Sum_probs=175.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+.           +|...+..+.|+|++ +.+++++.||.|++|++.+++              ..
T Consensus        33 i~i~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~--------------~~   86 (289)
T cd00200          33 IKVWDLETGELLRTLK-----------GHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGE--------------CV   86 (289)
T ss_pred             EEEEEeeCCCcEEEEe-----------cCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCccc--------------ce
Confidence            4677777654222222           267789999999998 799999999999999998764              12


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+ ..|...+.++.|++++++++++. ++.+++||+.++                +....+..|...  +.+++| +|+
T Consensus        87 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~  146 (289)
T cd00200          87 RTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----------------KCLTTLRGHTDW--VNSVAF-SPD  146 (289)
T ss_pred             EEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----------------EEEEEeccCCCc--EEEEEE-cCc
Confidence            222 56777899999999988888886 999999999866                566677777755  999999 898


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN  238 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~  238 (312)
                      +.++++++.++.|++||+++++.+..+..|...+.++.|+|+++.+++++.|+.|++||++.... ..+..+...+.. .
T Consensus       147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~-~  225 (289)
T cd00200         147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS-V  225 (289)
T ss_pred             CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEE-E
Confidence            99999988899999999999999989988988999999999999999999999999999987654 444345554433 4


Q ss_pred             ccCCCCceeEEecCCceEEEEEeccc
Q 021484          239 KQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       239 ~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      .+.+++.++++++.++.+++|++...
T Consensus       226 ~~~~~~~~~~~~~~~~~i~i~~~~~~  251 (289)
T cd00200         226 AFSPDGYLLASGSEDGTIRVWDLRTG  251 (289)
T ss_pred             EEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence            46667778888888999999998754

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.5e-27  Score=178.03  Aligned_cols=202  Identities=14%  Similarity=0.216  Sum_probs=165.4

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec-
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-  107 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-  107 (312)
                      .+.+..++|++...+.+++++.||++++||+....        .|+..+      +.|...|.++.|++-.+ .+++++ 
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--------~Pi~~~------kEH~~EV~Svdwn~~~r~~~ltsSW  125 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--------KPIHKF------KEHKREVYSVDWNTVRRRIFLTSSW  125 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCC--------cchhHH------HhhhhheEEeccccccceeEEeecc
Confidence            56899999999888999999999999999965433        344443      88999999999999664 555555 


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  187 (312)
                      |++|++|+...+                +.++++.+|...  |....|++..++.+++++.|+.+++||++..-....+.
T Consensus       126 D~TiKLW~~~r~----------------~Sv~Tf~gh~~~--Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~  187 (311)
T KOG0277|consen  126 DGTIKLWDPNRP----------------NSVQTFNGHNSC--IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE  187 (311)
T ss_pred             CCceEeecCCCC----------------cceEeecCCccE--EEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE
Confidence            999999999877                788899999976  99999944468899999999999999988643344488


Q ss_pred             cCccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCC-CCceeEEecCCceEEEEEecc
Q 021484          188 GDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       188 ~~~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      .|...+.++.|+.-. ..++||+.|+.||.||++..+  +..+.+|.-++.+.. +++ ....|++++.|.++++||...
T Consensus       188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk-~Sph~~~lLaSasYDmT~riw~~~~  266 (311)
T KOG0277|consen  188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVK-FSPHHASLLASASYDMTVRIWDPER  266 (311)
T ss_pred             eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEe-cCcchhhHhhhccccceEEeccccc
Confidence            999999999998754 569999999999999999876  456667777764444 555 677899999999999999764


Q ss_pred             c
Q 021484          264 R  264 (312)
Q Consensus       264 ~  264 (312)
                      .
T Consensus       267 ~  267 (311)
T KOG0277|consen  267 Q  267 (311)
T ss_pred             c
Confidence            4

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.2e-27  Score=198.75  Aligned_cols=180  Identities=17%  Similarity=0.330  Sum_probs=155.4

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+||++.+.+..+.|..           |++.|.+++.||+. -++++++.|-+|++||.+..=              ..
T Consensus        79 IrVfnynt~ekV~~FeA-----------H~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~w--------------a~  132 (794)
T KOG0276|consen   79 IRVFNYNTGEKVKTFEA-----------HSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEW--------------AC  132 (794)
T ss_pred             EEEEecccceeeEEeec-----------cccceeeeeecCCC-CeEEecCCccEEEEeeccCce--------------ee
Confidence            56777776655444443           89999999999998 499999999999999998542              22


Q ss_pred             cccccCCCccEEEEEEccCC-CeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec-
Q 021484           81 RHLIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG-  157 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~-~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s-  157 (312)
                      ...+.+|..-|.+++|+|.. ..+|+++ |++|++|.+.+.                .+..++.+|...  |.+++|++ 
T Consensus       133 ~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~----------------~~nfTl~gHekG--VN~Vdyy~~  194 (794)
T KOG0276|consen  133 EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP----------------HPNFTLEGHEKG--VNCVDYYTG  194 (794)
T ss_pred             eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC----------------CCceeeeccccC--cceEEeccC
Confidence            23338999999999999976 4888875 999999999987                788999999977  99999953 


Q ss_pred             CCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          158 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       158 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      ++..+|++|++|..++|||..+.+|++++.+|...|+.+.|+|.-+++++|++||++|||+..+.++
T Consensus       195 gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  195 GDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL  261 (794)
T ss_pred             CCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence            2346999999999999999999999999999999999999999999999999999999999888765

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.9e-26  Score=212.88  Aligned_cols=236  Identities=12%  Similarity=0.164  Sum_probs=181.6

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeEEEe
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~  106 (312)
                      +|...|.+++|+|++ +++++|+.|++|++|++........ ....++.      . ..+...+.+++|++. +.+|+++
T Consensus       481 ~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~-~~~~~~~------~-~~~~~~v~~l~~~~~~~~~las~  551 (793)
T PLN00181        481 NSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGR-DIHYPVV------E-LASRSKLSGICWNSYIKSQVASS  551 (793)
T ss_pred             CCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCccccccc-ccccceE------E-ecccCceeeEEeccCCCCEEEEE
Confidence            388999999999998 8999999999999999864210000 0000111      1 123457899999885 5688886


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEeccCCeeEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                       .|+.|++||+.++                +.+..+.+|...  |.+++| +| ++.+|++|+.||.|++||+++++.+.
T Consensus       552 ~~Dg~v~lWd~~~~----------------~~~~~~~~H~~~--V~~l~~-~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~  612 (793)
T PLN00181        552 NFEGVVQVWDVARS----------------QLVTEMKEHEKR--VWSIDY-SSADPTLLASGSDDGSVKLWSINQGVSIG  612 (793)
T ss_pred             eCCCeEEEEECCCC----------------eEEEEecCCCCC--EEEEEE-cCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence             5999999999877                677888889866  999999 65 78999999999999999999999888


Q ss_pred             EeecCccceEEEEEc-CCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          185 LMVGDRHVVNQLEPH-PHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~-p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .+..+ ..|.++.|+ +++.+|++|+.|+.|++||++...  ...+.+|...+.... +. ++..+++++.|+.+++||+
T Consensus       613 ~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~-f~-~~~~lvs~s~D~~ikiWd~  689 (793)
T PLN00181        613 TIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR-FV-DSSTLVSSSTDNTLKLWDL  689 (793)
T ss_pred             EEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEE-Ee-CCCEEEEEECCCEEEEEeC
Confidence            88755 678999995 578899999999999999998764  345566776664443 33 5678999999999999998


Q ss_pred             cccC-----c-----------cceeEeecCCCccCCCCCCCeEEEeecC
Q 021484          262 QRRQ-----T-----------LAYRERRYNAADFESDEEEGETYLLGFS  294 (312)
Q Consensus       262 ~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~  294 (312)
                      ....     .           .....+.+.+..++++..++.+++|+..
T Consensus       690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence            6321     0           0112466677888888888999999854

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=2.7e-27  Score=184.86  Aligned_cols=219  Identities=18%  Similarity=0.302  Sum_probs=176.6

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      ..|...|.+++.+|+. ++++||+.|....+|++.++..              ...+ .+|+..|+++.|+.+|.+||++
T Consensus        61 ~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge~--------------~~el-tgHKDSVt~~~FshdgtlLATG  124 (399)
T KOG0296|consen   61 DKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGEF--------------AGEL-TGHKDSVTCCSFSHDGTLLATG  124 (399)
T ss_pred             hhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCcc--------------eeEe-cCCCCceEEEEEccCceEEEec
Confidence            3599999999999977 8999999999999999999862              2222 8999999999999999999998


Q ss_pred             c-CCcEEEEEcCCCc--------------------------CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484          107 N-DELVYLFEKNMGL--------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus       107 ~-d~~i~iwd~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      . +|.|+||...++.                          +..+.++=.|.+......+.+.||..+  +++=.| .|+
T Consensus       125 dmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~--ct~G~f-~pd  201 (399)
T KOG0296|consen  125 DMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP--CTCGEF-IPD  201 (399)
T ss_pred             CCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC--cccccc-cCC
Confidence            5 9999999998775                          223334444445555678889999876  899998 899


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeec---------------------------------------------------
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVG---------------------------------------------------  188 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---------------------------------------------------  188 (312)
                      |+.++++..||+|++|++.+++++..+..                                                   
T Consensus       202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~  281 (399)
T KOG0296|consen  202 GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPS  281 (399)
T ss_pred             CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccccc
Confidence            99999999999999999999988764430                                                   


Q ss_pred             CccceEEE---EEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          189 DRHVVNQL---EPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       189 ~~~~v~~~---~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      +...+.++   .|+..-+++|.|+.||+|.|||+....++....|...++.+.|..  ..+|++++.++.++.||.++++
T Consensus       282 ~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~  359 (399)
T KOG0296|consen  282 QEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ  359 (399)
T ss_pred             chhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccc
Confidence            11111222   233334568889999999999999999888888998888877655  6799999999999999988774


Q ss_pred             c
Q 021484          266 T  266 (312)
Q Consensus       266 ~  266 (312)
                      .
T Consensus       360 l  360 (399)
T KOG0296|consen  360 L  360 (399)
T ss_pred             e
Confidence            3

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=5.6e-26  Score=185.39  Aligned_cols=233  Identities=18%  Similarity=0.286  Sum_probs=184.6

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      +|+.+|++++|+|++ ++|++++.||.+++|++.+++.              .. ....|...+..+.|+|++++++++ 
T Consensus         7 ~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~~--------------~~-~~~~~~~~i~~~~~~~~~~~l~~~~   70 (289)
T cd00200           7 GHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGEL--------------LR-TLKGHTGPVRDVAASADGTYLASGS   70 (289)
T ss_pred             ccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCCc--------------EE-EEecCCcceeEEEECCCCCEEEEEc
Confidence            589999999999998 7999999999999999987641              11 225678888999999999888776 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .++.|++|++.++                +....+..|...  +.++.| +++++++++++.++.|.+||+.+++....+
T Consensus        71 ~~~~i~i~~~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  131 (289)
T cd00200          71 SDKTIRLWDLETG----------------ECVRTLTGHTSY--VSSVAF-SPDGRILSSSSRDKTIKVWDVETGKCLTTL  131 (289)
T ss_pred             CCCeEEEEEcCcc----------------cceEEEeccCCc--EEEEEE-cCCCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence            5999999999876                567777777755  999999 888889999888999999999999999888


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      ..|...+.+++|+|++.++++++.|+.|++||++..+. ..+..+...+ ....+.+++..+++++.++.+++|+++...
T Consensus       132 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~  210 (289)
T cd00200         132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV-NSVAFSPDGEKLLSSSSDGTIKLWDLSTGK  210 (289)
T ss_pred             ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcccc-ceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence            88999999999999988898888899999999986653 4444444444 444567777788888889999999986432


Q ss_pred             ccc----------eeEeecCCCccCCCCCCCeEEEeecCCC
Q 021484          266 TLA----------YRERRYNAADFESDEEEGETYLLGFSDS  296 (312)
Q Consensus       266 ~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~  296 (312)
                      ...          ...+.++...+.....++.+++++...+
T Consensus       211 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~  251 (289)
T cd00200         211 CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG  251 (289)
T ss_pred             eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence            211          1144444445555555777888887643

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=2.9e-26  Score=187.00  Aligned_cols=234  Identities=17%  Similarity=0.218  Sum_probs=181.1

Q ss_pred             ecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE
Q 021484           17 CSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY   96 (312)
Q Consensus        17 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   96 (312)
                      ...++.......|..-|+|+.|+|+| .+|++++.||++.+||-.+++.+..+.         .   ..+|.+.|.+++|
T Consensus       177 GPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~---------~---~~aHkGsIfalsW  243 (603)
T KOG0318|consen  177 GPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELE---------D---SDAHKGSIFALSW  243 (603)
T ss_pred             CCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEec---------C---CCCccccEEEEEE
Confidence            33333333335799999999999998 899999999999999999987432211         0   2589999999999


Q ss_pred             ccCCCeEEEe-cCCcEEEEEcCCCcCC---------CC------------------CcCCcccccCCCCCceEecccCCc
Q 021484           97 SNTSELLISY-NDELVYLFEKNMGLGP---------SP------------------LSLSPEDLQKREEPQVYSGHRNSQ  148 (312)
Q Consensus        97 ~~~~~~l~s~-~d~~i~iwd~~~~~~~---------~~------------------~~~~~~~~~~~~~~~~~~~~~~~~  148 (312)
                      +||++.+++. .|.+++|||+.+....         .+                  ..+..-.......++.+.||... 
T Consensus       244 sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~-  322 (603)
T KOG0318|consen  244 SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS-  322 (603)
T ss_pred             CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc-
Confidence            9999988886 6999999999876410         00                  11122223444677888999966 


Q ss_pred             eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE--------------------------------------------
Q 021484          149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--------------------------------------------  184 (312)
Q Consensus       149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--------------------------------------------  184 (312)
                       |+++.. ++++.+|++|+.||.|.-|+..++..-+                                            
T Consensus       323 -ITaLtv-~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~  400 (603)
T KOG0318|consen  323 -ITALTV-SPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE  400 (603)
T ss_pred             -eeEEEE-cCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence             999998 9999999999999999999976542110                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 021484          185 --------------------------------------------------------------------------------  184 (312)
Q Consensus       185 --------------------------------------------------------------------------------  184 (312)
                                                                                                      
T Consensus       401 ~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee  480 (603)
T KOG0318|consen  401 VVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE  480 (603)
T ss_pred             eeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce
Confidence                                                                                            


Q ss_pred             -EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC--CCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          185 -LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP--PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       185 -~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                       .+..|.++|++++++|++.+||++...+.+-+||..+.+..  ...-|+..+. +..|++++.++++++-|..+.||++
T Consensus       481 ~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~-~~aWsP~n~~vATGSlDt~Viiysv  559 (603)
T KOG0318|consen  481 AKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN-CVAWSPNNKLVATGSLDTNVIIYSV  559 (603)
T ss_pred             eeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEE-EEEeCCCceEEEeccccceEEEEEc
Confidence             23357889999999999999999999999999999888752  2333666664 4558999999999999999999999


Q ss_pred             cccCcc
Q 021484          262 QRRQTL  267 (312)
Q Consensus       262 ~~~~~~  267 (312)
                      .++...
T Consensus       560 ~kP~~~  565 (603)
T KOG0318|consen  560 KKPAKH  565 (603)
T ss_pred             cChhhh
Confidence            876444

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=5.5e-28  Score=187.94  Aligned_cols=225  Identities=18%  Similarity=0.286  Sum_probs=185.0

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  107 (312)
                      ....|+|+.+..   ..+++|..|++|+|||..+..              |.+.+ .+|.+.|.|+.|.  .+.+++| +
T Consensus       196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~--------------c~~~L-~GHtGSVLCLqyd--~rviisGSS  255 (499)
T KOG0281|consen  196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLE--------------CLKIL-TGHTGSVLCLQYD--ERVIVSGSS  255 (499)
T ss_pred             cCCceEEEEecc---hhhhcccccCceEEeccccHH--------------HHHhh-hcCCCcEEeeecc--ceEEEecCC
Confidence            467899999864   579999999999999998876              55555 8999999999885  4588887 5


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee---EE
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL---VR  184 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~---~~  184 (312)
                      |.+|++||.+++                +++.++-+|...  |..+.|   +..++++++.|.++.+||+....-   .+
T Consensus       256 DsTvrvWDv~tg----------------e~l~tlihHcea--VLhlrf---~ng~mvtcSkDrsiaVWdm~sps~it~rr  314 (499)
T KOG0281|consen  256 DSTVRVWDVNTG----------------EPLNTLIHHCEA--VLHLRF---SNGYMVTCSKDRSIAVWDMASPTDITLRR  314 (499)
T ss_pred             CceEEEEeccCC----------------chhhHHhhhcce--eEEEEE---eCCEEEEecCCceeEEEeccCchHHHHHH
Confidence            999999999999                899999999866  999998   467999999999999999886543   34


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      .+.+|...|+.+.|  +.+++++++.|.+|++|++.+.+ +.++.+|...+.   +..-.++++++|+.|.+|++|++..
T Consensus       315 VLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIA---ClQYr~rlvVSGSSDntIRlwdi~~  389 (499)
T KOG0281|consen  315 VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIA---CLQYRDRLVVSGSSDNTIRLWDIEC  389 (499)
T ss_pred             HHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccce---ehhccCeEEEecCCCceEEEEeccc
Confidence            56799999999999  55699999999999999999987 477888888772   2344678999999999999999876


Q ss_pred             cCccce--------eEeecCCCccCCCCCCCeEEEeecCCCCCC
Q 021484          264 RQTLAY--------RERRYNAADFESDEEEGETYLLGFSDSDAS  299 (312)
Q Consensus       264 ~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  299 (312)
                      +..+..        ..-..+...+.++.-+|.+-+||+..+.+.
T Consensus       390 G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  390 GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             cHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCC
Confidence            643322        133445667788888899999999776654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.1e-27  Score=201.23  Aligned_cols=248  Identities=17%  Similarity=0.180  Sum_probs=184.6

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecC-----------------------CC---------------
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS-----------------------PI---------------   69 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------------------~~---------------   69 (312)
                      .|.+.|.++.|+++| ++||+|+.|+.|+||.+...+...                       ..               
T Consensus       265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            599999999999999 899999999999999987611100                       00               


Q ss_pred             CCCC-----Ccccc--cccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe
Q 021484           70 SSDT-----PVDTF--CPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS  142 (312)
Q Consensus        70 ~~~~-----~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (312)
                      ..+.     .+-.|  .+...+.+|.+.|..|.|+.++-+|.++.|.+|++|++...                .+++.|.
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~----------------~CL~~F~  407 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK----------------ECLKVFS  407 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc----------------ceeeEEe
Confidence            0000     00000  12223478999999999998876666678999999999887                7888886


Q ss_pred             cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          143 GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       143 ~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                       |.+  +|+||+|++.|.+|+++|+-||.|+||++...+.+.-.. -..-|++++|.|+|++.+.|+.+|..++|+....
T Consensus       408 -Hnd--fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  408 -HND--FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL  483 (712)
T ss_pred             -cCC--eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence             764  499999976689999999999999999998776654433 4478999999999999999999999999998876


Q ss_pred             CCCC---CCC------ChhhhhhhhccCCCCceeEEecCCceEEEEEeccc------------CccceeEeecCCCccCC
Q 021484          223 DFPP---LPD------NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR------------QTLAYRERRYNAADFES  281 (312)
Q Consensus       223 ~~~~---~~~------~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~------------~~~~~~~~~~~~~~~~~  281 (312)
                      ++..   +..      ....|...-+...+...++..+.|..|||+|.+..            .......+..++..+.+
T Consensus       484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs  563 (712)
T KOG0283|consen  484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS  563 (712)
T ss_pred             eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence            5311   110      11234444333345557888899999999998332            22233367778999999


Q ss_pred             CCCCCeEEEeecCCC
Q 021484          282 DEEEGETYLLGFSDS  296 (312)
Q Consensus       282 ~~~~~~v~~~~~~~~  296 (312)
                      ..++-.||+|..+..
T Consensus       564 ~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  564 ASEDSWVYIWKNDSF  578 (712)
T ss_pred             eecCceEEEEeCCCC
Confidence            989999999997443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.95  E-value=2e-26  Score=187.92  Aligned_cols=222  Identities=14%  Similarity=0.192  Sum_probs=163.6

Q ss_pred             cCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021484           25 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  104 (312)
Q Consensus        25 ~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  104 (312)
                      .|-+|..+++-..|+|.| .++|+|...|+|||||....+.             .+++-+..-.++|..|+|+.+++.|+
T Consensus        54 iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~h-------------iLKnef~v~aG~I~Di~Wd~ds~RI~  119 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEH-------------ILKNEFQVLAGPIKDISWDFDSKRIA  119 (603)
T ss_pred             eeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcce-------------eeeeeeeecccccccceeCCCCcEEE
Confidence            345799999999999998 8999999999999999876432             12222244478899999999998666


Q ss_pred             E-ec----CCcEEEEEcCCCcCCC-------------------------CCcCCcccccCCCCCceEecccCCceeeEEE
Q 021484          105 S-YN----DELVYLFEKNMGLGPS-------------------------PLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  154 (312)
Q Consensus       105 s-~~----d~~i~iwd~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  154 (312)
                      + +.    -|.+.+||..+..+..                         +..+.+..-.+++....+..|..  .|.++.
T Consensus       120 avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk--FV~~VR  197 (603)
T KOG0318|consen  120 AVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSK--FVNCVR  197 (603)
T ss_pred             EEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccc--ceeeEE
Confidence            6 42    2457788876543211                         11111111223344444556664  499999


Q ss_pred             EecCCCCEEEEeccCceEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-------
Q 021484          155 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-------  224 (312)
Q Consensus       155 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-------  224 (312)
                      | +|+|.++++++.||++.+||=.+++.+..+.   +|.+.|..++|+||+..++|++.|.+++|||+.+.++       
T Consensus       198 y-sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~  276 (603)
T KOG0318|consen  198 Y-SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG  276 (603)
T ss_pred             E-CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecC
Confidence            9 9999999999999999999999999999997   8999999999999999999999999999999875432       


Q ss_pred             -------------------------------------CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          225 -------------------------------------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       225 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                                                           ..+.+|.+.+ +....++++.++++++.||.|.-|++...
T Consensus       277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~I-TaLtv~~d~~~i~SgsyDG~I~~W~~~~g  352 (603)
T KOG0318|consen  277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSI-TALTVSPDGKTIYSGSYDGHINSWDSGSG  352 (603)
T ss_pred             CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccce-eEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence                                                 1222344444 33335666777888888888888876554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.1e-27  Score=200.83  Aligned_cols=230  Identities=15%  Similarity=0.218  Sum_probs=185.4

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      +.+|..++|||.. -.++++-..|.|++||.+-+.+              ...+ ..|.++|..++|+|.+.+++++ .|
T Consensus         9 SsRvKglsFHP~r-PwILtslHsG~IQlWDYRM~tl--------------i~rF-deHdGpVRgv~FH~~qplFVSGGDD   72 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKR-PWILTSLHSGVIQLWDYRMGTL--------------IDRF-DEHDGPVRGVDFHPTQPLFVSGGDD   72 (1202)
T ss_pred             cccccceecCCCC-CEEEEeecCceeeeehhhhhhH--------------Hhhh-hccCCccceeeecCCCCeEEecCCc
Confidence            6689999999998 4899999999999999998762              2222 8899999999999999999997 58


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  188 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  188 (312)
                      -.|++|+..+.                +++.++.||.+-  |..+.| ++.-.+++++++|.+|+||++.+.+++..+.+
T Consensus        73 ykIkVWnYk~r----------------rclftL~GHlDY--VRt~~F-HheyPWIlSASDDQTIrIWNwqsr~~iavltG  133 (1202)
T KOG0292|consen   73 YKIKVWNYKTR----------------RCLFTLLGHLDY--VRTVFF-HHEYPWILSASDDQTIRIWNWQSRKCIAVLTG  133 (1202)
T ss_pred             cEEEEEecccc----------------eehhhhccccce--eEEeec-cCCCceEEEccCCCeEEEEeccCCceEEEEec
Confidence            89999999987                899999999955  999998 89999999999999999999999999999999


Q ss_pred             CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC------------------------------CCCCChhhhhhhh
Q 021484          189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP------------------------------PLPDNAEKIMKAN  238 (312)
Q Consensus       189 ~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~------------------------------~~~~~~~~~~~~~  238 (312)
                      |..-|.|..|+|....++++|.|.+||+||+.+-+..                              .+.+|...+ .-+
T Consensus       134 HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGV-Nwa  212 (1202)
T KOG0292|consen  134 HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGV-NWA  212 (1202)
T ss_pred             CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccccc-ceE
Confidence            9999999999999999999999999999998643211                              122334433 333


Q ss_pred             ccCCCCceeEEecCCceEEEEEecccCccce------------eEeecCCCccCCCCCCCeEEEeecCC
Q 021484          239 KQGREDHSRITLTPDVIMHVLRLQRRQTLAY------------RERRYNAADFESDEEEGETYLLGFSD  295 (312)
Q Consensus       239 ~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~~  295 (312)
                      .+++.-.++++|+.|..+++|+++.......            .-+-|...-+.+..++..+-+||.+.
T Consensus       213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence            3556668999999999999999865422211            12333344455556666777777644

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.3e-27  Score=176.98  Aligned_cols=200  Identities=16%  Similarity=0.197  Sum_probs=165.3

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEEe
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~  106 (312)
                      .|...|.++.|++...+.+++++-|++|++|+....+         .+++|      .+|...|...+|+|.- .+++++
T Consensus       102 EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~---------Sv~Tf------~gh~~~Iy~a~~sp~~~nlfas~  166 (311)
T KOG0277|consen  102 EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN---------SVQTF------NGHNSCIYQAAFSPHIPNLFASA  166 (311)
T ss_pred             hhhhheEEeccccccceeEEeeccCCceEeecCCCCc---------ceEee------cCCccEEEEEecCCCCCCeEEEc
Confidence            4899999999999776889999999999999988665         23333      8899999999999966 477775


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVR  184 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~  184 (312)
                       +|+++++||++..                .....+..|...  +.++.|...+.+.|++|+.|+.|++||++.- .++.
T Consensus       167 Sgd~~l~lwdvr~~----------------gk~~~i~ah~~E--il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~  228 (311)
T KOG0277|consen  167 SGDGTLRLWDVRSP----------------GKFMSIEAHNSE--ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF  228 (311)
T ss_pred             cCCceEEEEEecCC----------------CceeEEEeccce--eEeecccccCCcEEEecCCCceEEEEehhhccccce
Confidence             5999999999875                344458888865  9999996667889999999999999998864 5688


Q ss_pred             EeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          185 LMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      .+.+|.-.|..++|||... .||+++.|-++||||...+.  +.+..-|+.-+....+..-.+.++++.+-|..++||+
T Consensus       229 eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  229 ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             eecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            8899999999999999865 59999999999999998664  3445556666655554444788999999999999997

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=3.3e-26  Score=197.20  Aligned_cols=251  Identities=11%  Similarity=0.047  Sum_probs=175.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEe-cCC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDE  109 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~  109 (312)
                      .|.....++++ ..+++++.+.....|+...+..+..........  .....+.+|.+.|.+++|+| ++.+|+++ .|+
T Consensus        22 ~i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~--~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         22 NVTPSTALWDC-SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA--SNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ccccccccCCC-CCcEeECCceEEEEEecCCceEEeeccccccCC--CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            45555566665 456777778888888876544321111111111  11123478999999999999 77888886 599


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCeeEEEeec
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLMVG  188 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~  188 (312)
                      +|++||+.......         .....+..+.+|...  |.+++| +|++ ++|++++.|+.|++||+.+++.+..+.+
T Consensus        99 tIkIWdi~~~~~~~---------~~~~~l~~L~gH~~~--V~~l~f-~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~  166 (493)
T PTZ00421         99 TIMGWGIPEEGLTQ---------NISDPIVHLQGHTKK--VGIVSF-HPSAMNVLASAGADMVVNVWDVERGKAVEVIKC  166 (493)
T ss_pred             EEEEEecCCCcccc---------ccCcceEEecCCCCc--EEEEEe-CcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence            99999997641000         001345678888866  999999 7875 7999999999999999999999999999


Q ss_pred             CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEec----CCceEEEEEecc
Q 021484          189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLT----PDVIMHVLRLQR  263 (312)
Q Consensus       189 ~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~----~d~~i~i~~~~~  263 (312)
                      |...|.+++|+|++.+|++++.|++|++||++++.. ..+..|.........+.++...+++.+    .|+.+++||++.
T Consensus       167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            999999999999999999999999999999998764 445556544433344556555666543    478999999876


Q ss_pred             cCcccee------------EeecCCCccCCC-CCCCeEEEeecCCCC
Q 021484          264 RQTLAYR------------ERRYNAADFESD-EEEGETYLLGFSDSD  297 (312)
Q Consensus       264 ~~~~~~~------------~~~~~~~~~~~~-~~~~~v~~~~~~~~~  297 (312)
                      .......            .+.++...+... ..++.|.++++.++.
T Consensus       247 ~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        247 MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence            4332211            233444444433 346778888887654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.3e-25  Score=190.45  Aligned_cols=230  Identities=13%  Similarity=0.180  Sum_probs=192.4

Q ss_pred             cceEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      .+|..++|+..| ..||.|+. -|.+-+|+.++...              .... .+|...+++++++|||+++|+| .|
T Consensus       308 ~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsY--------------VlKQ-QgH~~~i~~l~YSpDgq~iaTG~eD  371 (893)
T KOG0291|consen  308 QKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESY--------------VLKQ-QGHSDRITSLAYSPDGQLIATGAED  371 (893)
T ss_pred             ceeeEEEecccC-CEEEEcCCccceEEEEEeeccce--------------eeec-cccccceeeEEECCCCcEEEeccCC
Confidence            469999999999 78888865 48999999987652              2222 7899999999999999999997 69


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  188 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  188 (312)
                      |+|+|||..++                -+..+|..|...  |+.+.| +..++.+++.+.||+|+.||+...+..+++..
T Consensus       372 gKVKvWn~~Sg----------------fC~vTFteHts~--Vt~v~f-~~~g~~llssSLDGtVRAwDlkRYrNfRTft~  432 (893)
T KOG0291|consen  372 GKVKVWNTQSG----------------FCFVTFTEHTSG--VTAVQF-TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS  432 (893)
T ss_pred             CcEEEEeccCc----------------eEEEEeccCCCc--eEEEEE-EecCCEEEEeecCCeEEeeeecccceeeeecC
Confidence            99999999988                689999999977  999999 89999999999999999999999998888875


Q ss_pred             Cc-cceEEEEEcCCCCeEEEEeCCC-cEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          189 DR-HVVNQLEPHPHIPMFATCGIEK-TVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       189 ~~-~~v~~~~~~p~~~~l~t~~~d~-~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      .. -...+++..|.|..+++|+.|. .|.+|+++++++ ..+.+|..++.. ..+++.+..|++++-|.+||+|++-...
T Consensus       433 P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~-l~f~~~~~~LaS~SWDkTVRiW~if~s~  511 (893)
T KOG0291|consen  433 PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSG-LSFSPDGSLLASGSWDKTVRIWDIFSSS  511 (893)
T ss_pred             CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCccee-eEEccccCeEEeccccceEEEEEeeccC
Confidence            43 3567889999999999999776 699999999985 667788888744 4478888999999999999999985441


Q ss_pred             c----------cceeEeecCCCccCCCCCCCeEEEeecCCC
Q 021484          266 T----------LAYRERRYNAADFESDEEEGETYLLGFSDS  296 (312)
Q Consensus       266 ~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  296 (312)
                      .          ..-..++|++..++...-+|.+-++|..++
T Consensus       512 ~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~  552 (893)
T KOG0291|consen  512 GTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA  552 (893)
T ss_pred             ceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence            1          111277888888888888888888887654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=6.1e-26  Score=173.13  Aligned_cols=201  Identities=14%  Similarity=0.187  Sum_probs=166.4

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  105 (312)
                      .||++.|..+.|.+++ +.+++++.|.+++.||+++++              +.... ..|..-+.++.-+.-|. ++.+
T Consensus        87 kgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG~--------------~~rk~-k~h~~~vNs~~p~rrg~~lv~S  150 (338)
T KOG0265|consen   87 KGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETGK--------------RIRKH-KGHTSFVNSLDPSRRGPQLVCS  150 (338)
T ss_pred             ccccceeEeeeeccCC-CEEEEecCCceEEEEecccce--------------eeehh-ccccceeeecCccccCCeEEEe
Confidence            3799999999999999 899999999999999999998              33333 78888898888555565 4455


Q ss_pred             ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                      ++ |+++++||+++.                ..++++.... .  ++++.| ...+..+.+|+-|+.|++||++.+....
T Consensus       151 gsdD~t~kl~D~R~k----------------~~~~t~~~ky-q--ltAv~f-~d~s~qv~sggIdn~ikvWd~r~~d~~~  210 (338)
T KOG0265|consen  151 GSDDGTLKLWDIRKK----------------EAIKTFENKY-Q--LTAVGF-KDTSDQVISGGIDNDIKVWDLRKNDGLY  210 (338)
T ss_pred             cCCCceEEEEeeccc----------------chhhccccce-e--EEEEEe-cccccceeeccccCceeeeccccCcceE
Confidence            54 999999999987                5666665332 2  899999 8899999999999999999999999999


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-----CCCCCCCh----hhhhhhhccCCCCceeEEecCCce
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNA----EKIMKANKQGREDHSRITLTPDVI  255 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~l~s~~~d~~  255 (312)
                      .+.+|..+|+.+..+|.|.++.+-+.|.++++||++...     +..+.++.    ...+.+. |+++.+.+-+++.|..
T Consensus       211 ~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs-wsp~~~~i~ags~dr~  289 (338)
T KOG0265|consen  211 TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS-WSPNGTKITAGSADRF  289 (338)
T ss_pred             EeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee-ccCCCCccccccccce
Confidence            999999999999999999999999999999999987542     23333332    2233433 7888999999999999


Q ss_pred             EEEEEeccc
Q 021484          256 MHVLRLQRR  264 (312)
Q Consensus       256 i~i~~~~~~  264 (312)
                      +++||....
T Consensus       290 vyvwd~~~r  298 (338)
T KOG0265|consen  290 VYVWDTTSR  298 (338)
T ss_pred             EEEeecccc
Confidence            999996654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=2.5e-26  Score=184.24  Aligned_cols=237  Identities=14%  Similarity=0.211  Sum_probs=178.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |.|||.......+.... ...+..+..||...-++++|++...-.+++++.|++|.+||+......        -....+
T Consensus       149 v~Vfd~tk~~s~~~~~~-~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~--------~~~~~p  219 (422)
T KOG0264|consen  149 VYVFDYTKHPSKPKASG-ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE--------DKVVDP  219 (422)
T ss_pred             EEEEEeccCCCcccccc-cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC--------Cccccc
Confidence            46788765443332221 222333345788888899999987779999999999999999865421        111245


Q ss_pred             cccccCCCccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           81 RHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                      ...+.+|...|..++|++... ++++. .|+.+.|||++++              +.++.+...+|...  |.+++|.+-
T Consensus       220 ~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--------------~~~~~~~~~ah~~~--vn~~~fnp~  283 (422)
T KOG0264|consen  220 KTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--------------TSKPSHSVKAHSAE--VNCVAFNPF  283 (422)
T ss_pred             eEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--------------CCCCcccccccCCc--eeEEEeCCC
Confidence            566689999999999999775 55554 6999999999952              11566777888876  999999444


Q ss_pred             CCCEEEEeccCceEEEEeccC-CeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC-------------
Q 021484          159 NDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD-------------  223 (312)
Q Consensus       159 ~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~-------------  223 (312)
                      ++..||+|+.|++|.+||+++ .+++..+.+|...|..|.|+|.... ||+++.|+.+.|||+..-.             
T Consensus       284 ~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgpp  363 (422)
T KOG0264|consen  284 NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPP  363 (422)
T ss_pred             CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCc
Confidence            567789999999999999987 4578899999999999999998765 8999999999999986421             


Q ss_pred             --CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          224 --FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       224 --~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                        +..-.+|...+....|-..+...+++.+.|+.++||.+.
T Consensus       364 EllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  364 ELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence              122236677776666544467788899999999999865

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1.2e-25  Score=194.14  Aligned_cols=228  Identities=17%  Similarity=0.270  Sum_probs=181.9

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||.+.|.++++.. +..++++|+.|.++++||..+++              |...+ .+|...+.++...+  .+++++
T Consensus       246 ~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~--------------C~~~l-~gh~stv~~~~~~~--~~~~sg  307 (537)
T KOG0274|consen  246 VGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGE--------------CTHSL-QGHTSSVRCLTIDP--FLLVSG  307 (537)
T ss_pred             cCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCc--------------EEEEe-cCCCceEEEEEccC--ceEeec
Confidence            47999999999987 44899999999999999999998              44444 78999998886643  366665


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                       .|.+|++|+++++                ..+..+.+|...  |.++.+ +  +.++++|+.|++|++||+.+++++..
T Consensus       308 s~D~tVkVW~v~n~----------------~~l~l~~~h~~~--V~~v~~-~--~~~lvsgs~d~~v~VW~~~~~~cl~s  366 (537)
T KOG0274|consen  308 SRDNTVKVWDVTNG----------------ACLNLLRGHTGP--VNCVQL-D--EPLLVSGSYDGTVKVWDPRTGKCLKS  366 (537)
T ss_pred             cCCceEEEEeccCc----------------ceEEEecccccc--EEEEEe-c--CCEEEEEecCceEEEEEhhhceeeee
Confidence             5999999999988                788888888866  999987 4  89999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC--CCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      +.+|...|+++.+.+. ..+++|+.|++|++||+.+.  ++.++.+|..-+...   ...+..|++++.|+.|++||...
T Consensus       367 l~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l---~~~~~~Lvs~~aD~~Ik~WD~~~  442 (537)
T KOG0274|consen  367 LSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL---LLRDNFLVSSSADGTIKLWDAEE  442 (537)
T ss_pred             ecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc---ccccceeEeccccccEEEeeccc
Confidence            9999999999988666 88999999999999999998  467777776666322   33467999999999999999877


Q ss_pred             cCccceeEee---------cCCCccCCCCCCCeEEEeecCCCC
Q 021484          264 RQTLAYRERR---------YNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       264 ~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      .+.....+-.         .....+.....++.+.++|...+.
T Consensus       443 ~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~  485 (537)
T KOG0274|consen  443 GECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGT  485 (537)
T ss_pred             CceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCc
Confidence            6443222111         011223333456667777776654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.2e-25  Score=186.28  Aligned_cols=249  Identities=17%  Similarity=0.260  Sum_probs=192.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |.+|+-.+.+...+...           +...|+++.|+++| ..|++|..+|.|.|||..+.+              ..
T Consensus       199 vylW~~~s~~v~~l~~~-----------~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k--------------~~  252 (484)
T KOG0305|consen  199 VYLWSASSGSVTELCSF-----------GEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQK--------------KT  252 (484)
T ss_pred             EEEEecCCCceEEeEec-----------CCCceEEEEECCCC-CEEEEeecCCeEEEEehhhcc--------------cc
Confidence            46788776654444433           24579999999999 899999999999999998776              33


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+...|...|.+++|+  +..+.++ .++.|..+|++...               .....+.+|...  |+.+.| +++
T Consensus       253 ~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~---------------~~~~~~~~H~qe--VCgLkw-s~d  312 (484)
T KOG0305|consen  253 RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ---------------HVVSTLQGHRQE--VCGLKW-SPD  312 (484)
T ss_pred             ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch---------------hhhhhhhcccce--eeeeEE-CCC
Confidence            33323399999999998  5567776 59999999998762               233347888876  999999 999


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC-CeEEEEe--CCCcEEEccCCCCCCCCCCCChhhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCG--IEKTVKLWAPMPTDFPPLPDNAEKIMK  236 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~  236 (312)
                      ++++++|+.|+.+.|||....+++..+..|.+.|..++|+|-. ..||+|+  .|+.|++||..++...........|..
T Consensus       313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcs  392 (484)
T KOG0305|consen  313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCS  392 (484)
T ss_pred             CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceee
Confidence            9999999999999999998889999999999999999999965 4588776  899999999998876444444555555


Q ss_pred             hhccCCC-CceeEE-ecCCceEEEEEecccCc----------cceeEeecCCCccCCCCCCCeEEEeecCCC
Q 021484          237 ANKQGRE-DHSRIT-LTPDVIMHVLRLQRRQT----------LAYRERRYNAADFESDEEEGETYLLGFSDS  296 (312)
Q Consensus       237 ~~~~~~~-~~~l~s-~~~d~~i~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  296 (312)
                      +. |++. .+++.+ |-.+..+.+|+..+...          ..+...+|++..+.+...++.+-+|.+-+.
T Consensus       393 L~-Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  393 LI-WSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EE-EcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            55 5554 455555 44668999998754322          123377888888888888888888887664

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.1e-26  Score=197.25  Aligned_cols=223  Identities=14%  Similarity=0.227  Sum_probs=173.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |-+||+...-..+++...+        .|...++++.|++..+++|++|+.||+|++||++..+-              .
T Consensus       112 i~vWdlnk~~rnk~l~~f~--------EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--------------~  169 (839)
T KOG0269|consen  112 ISVWDLNKSIRNKLLTVFN--------EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--------------K  169 (839)
T ss_pred             EEEEecCccccchhhhHhh--------hhccceeeeeeccCCccEEEecCCCceEEEEeeecccc--------------c
Confidence            4588887643344433321        38899999999999999999999999999999997761              1


Q ss_pred             cccccCCCccEEEEEEccCC-CeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           81 RHLIGKNNIHITGLAYSNTS-ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                      .. ..+..+.|..++|+|.. ..++++ ..|.+++||++...               +....+..|.++  |.++.| +|
T Consensus       170 ~t-~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---------------r~~~k~~AH~Gp--V~c~nw-hP  230 (839)
T KOG0269|consen  170 ST-FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---------------RCEKKLTAHNGP--VLCLNW-HP  230 (839)
T ss_pred             cc-ccccchhhhceeeccCCCceEEEecCCceEEEeeccCch---------------hHHHHhhcccCc--eEEEee-cC
Confidence            11 25567889999999965 477776 68999999998753               566778899976  999999 89


Q ss_pred             CCCEEEEeccCceEEEEeccCCeeEEEeec-CccceEEEEEcCCCCe-EEEEe--CCCcEEEccCCCCCC--CCCCCChh
Q 021484          159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIPM-FATCG--IEKTVKLWAPMPTDF--PPLPDNAE  232 (312)
Q Consensus       159 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~-l~t~~--~d~~i~iwd~~~~~~--~~~~~~~~  232 (312)
                      ++.+||+|+.|++|+|||+.+++......- ...+|..|+|-|..++ ||+++  .|-.|+|||++..-+  .++..|..
T Consensus       231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~  310 (839)
T KOG0269|consen  231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD  310 (839)
T ss_pred             CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence            999999999999999999986554332222 2368999999999887 77776  678999999987754  56667777


Q ss_pred             hhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          233 KIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       233 ~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      .+....|.+.+...+.+++.|+.+..-.++..
T Consensus       311 ~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  311 SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            77666666667889999999998765544433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=4.2e-26  Score=182.91  Aligned_cols=219  Identities=21%  Similarity=0.282  Sum_probs=175.6

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-  106 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-  106 (312)
                      |.+.|+.+.+-|+++.++|+++..+.+.|||..+..-..     .....+.+...+.+|...-++++|++... .|+++ 
T Consensus       123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~-----~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~  197 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKP-----KASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS  197 (422)
T ss_pred             CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcc-----cccccCCCceEEEeecccccccccccccceeEeecc
Confidence            889999999999999999999999999999987543111     11113445555688888788999999876 56665 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc--CCeeEE
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK--GGKLVR  184 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~--~~~~~~  184 (312)
                      .|++|++||+......         -....+...+.+|...  |..++|+..+...+++++.|+.+.|||++  +.++..
T Consensus       198 ~d~~i~lwdi~~~~~~---------~~~~~p~~~~~~h~~~--VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~  266 (422)
T KOG0264|consen  198 DDHTICLWDINAESKE---------DKVVDPKTIFSGHEDV--VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH  266 (422)
T ss_pred             CCCcEEEEeccccccC---------CccccceEEeecCCcc--eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc
Confidence            6999999999865211         0111456678889866  99999965567788999999999999999  566677


Q ss_pred             EeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          185 LMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      ..++|.+.|.+++|+|-+.. |||||.|++|++||++...  +.++.+|...++..-|-......|++.+.|+.+.+||+
T Consensus       267 ~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl  346 (422)
T KOG0264|consen  267 SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL  346 (422)
T ss_pred             cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence            78899999999999997655 9999999999999999764  68888899999777654447889999999999999998


Q ss_pred             cc
Q 021484          262 QR  263 (312)
Q Consensus       262 ~~  263 (312)
                      .+
T Consensus       347 s~  348 (422)
T KOG0264|consen  347 SR  348 (422)
T ss_pred             cc
Confidence            65

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=7.7e-25  Score=189.84  Aligned_cols=221  Identities=13%  Similarity=0.129  Sum_probs=158.1

Q ss_pred             EeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeEEEe-cCCcEEEEEcCCCcCCCCCc
Q 021484           49 GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY-NDELVYLFEKNMGLGPSPLS  126 (312)
Q Consensus        49 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~  126 (312)
                      |+.++.|++|+.....              . ...+.+|...|.+++|+|+ +.+|+++ .|+.|++||+.++.....  
T Consensus        50 GG~~gvI~L~~~~r~~--------------~-v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--  112 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP--------------P-VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--  112 (568)
T ss_pred             CCceeEEEeeecCCCc--------------e-EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--
Confidence            5567888888876442              1 2223789999999999997 6788886 599999999976410000  


Q ss_pred             CCcccccCCCCCceEecccCCceeeEEEEecCCCCE-EEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE
Q 021484          127 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF  205 (312)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  205 (312)
                            ....+...+.+|...  |.+++| +|++.. |++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|
T Consensus       113 ------~i~~p~~~L~gH~~~--V~sVaf-~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL  182 (568)
T PTZ00420        113 ------EIKDPQCILKGHKKK--ISIIDW-NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL  182 (568)
T ss_pred             ------ccccceEEeecCCCc--EEEEEE-CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE
Confidence                  000234467788865  999999 898875 5789999999999999998877776 56789999999999999


Q ss_pred             EEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhcc----CCCCceeEEecCCc----eEEEEEecccCcccee-Ee---
Q 021484          206 ATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQ----GREDHSRITLTPDV----IMHVLRLQRRQTLAYR-ER---  272 (312)
Q Consensus       206 ~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~l~s~~~d~----~i~i~~~~~~~~~~~~-~~---  272 (312)
                      ++++.|+.|+|||++++.. ..+.+|...+.....+    ++++.++++++.++    .+++||++.....+.. ..   
T Consensus       183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~  262 (568)
T PTZ00420        183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA  262 (568)
T ss_pred             EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC
Confidence            9999999999999998864 5566666544322222    36777888877664    7999999864333222 11   


Q ss_pred             ---------ecCCCccCCCCCCCeEEEeecCCC
Q 021484          273 ---------RYNAADFESDEEEGETYLLGFSDS  296 (312)
Q Consensus       273 ---------~~~~~~~~~~~~~~~v~~~~~~~~  296 (312)
                               .+.+..+.++..++.++++++..+
T Consensus       263 ~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        263 SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             ccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence                     112334445566777888877554

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=1.6e-25  Score=175.82  Aligned_cols=210  Identities=14%  Similarity=0.305  Sum_probs=166.4

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee--cCCCC--------CCCCcccccccccccCCCccEEEEEEc
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHW--YSPIS--------SDTPVDTFCPRHLIGKNNIHITGLAYS   97 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~   97 (312)
                      ||...|.+++..+++ ..+++|+.|..|++|+..+...  .....        .......-.+...+.+|.++|.++.|+
T Consensus       191 GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~  269 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS  269 (423)
T ss_pred             ccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence            899999999999999 8999999999999999332110  00000        011112223445558999999999999


Q ss_pred             cCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEec
Q 021484           98 NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK  177 (312)
Q Consensus        98 ~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~  177 (312)
                      +.+..+.++-|.+|+.||+.++                .....+.+..   .+.++.+ +|..++|++|+.|..+++||.
T Consensus       270 d~~v~yS~SwDHTIk~WDletg----------------~~~~~~~~~k---sl~~i~~-~~~~~Ll~~gssdr~irl~DP  329 (423)
T KOG0313|consen  270 DATVIYSVSWDHTIKVWDLETG----------------GLKSTLTTNK---SLNCISY-SPLSKLLASGSSDRHIRLWDP  329 (423)
T ss_pred             CCCceEeecccceEEEEEeecc----------------cceeeeecCc---ceeEeec-ccccceeeecCCCCceeecCC
Confidence            9444444456999999999988                5655555443   3899999 899999999999999999999


Q ss_pred             cCCe---eEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEec
Q 021484          178 KGGK---LVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLT  251 (312)
Q Consensus       178 ~~~~---~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~  251 (312)
                      +++.   ...++.+|...|.++.|+|...+ |++++.|+++++||+++..  +..+.+|...++...|.  ++.++++|+
T Consensus       330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGG  407 (423)
T KOG0313|consen  330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGG  407 (423)
T ss_pred             CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEecc
Confidence            8753   45678899999999999998877 9999999999999999876  57788888888777664  346899999


Q ss_pred             CCceEEEEE
Q 021484          252 PDVIMHVLR  260 (312)
Q Consensus       252 ~d~~i~i~~  260 (312)
                      .|.+++++.
T Consensus       408 aD~~l~i~~  416 (423)
T KOG0313|consen  408 ADNKLRIFK  416 (423)
T ss_pred             CcceEEEec
Confidence            999999986

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.1e-25  Score=181.92  Aligned_cols=229  Identities=14%  Similarity=0.221  Sum_probs=172.9

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec-
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-  107 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-  107 (312)
                      ...|+++.|-.+| ++||+|...|.|++||+.+..               ....+.+|+.++..+.|+|++. .+++++ 
T Consensus        68 k~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~---------------iLR~~~ah~apv~~~~f~~~d~t~l~s~sD  131 (487)
T KOG0310|consen   68 KDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRV---------------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSD  131 (487)
T ss_pred             ccceeEEEeecCC-eEEEccCCcCcEEEeccccHH---------------HHHHHhhccCceeEEEecccCCeEEEecCC
Confidence            5679999999999 899999999999999966532               2222389999999999999886 666675 


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEEEe
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLM  186 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~  186 (312)
                      |+.+++||+.+.                .....+.+|.+-  |.+.+|.+.++..+++|+.||.|++||++.. ..+.++
T Consensus       132 d~v~k~~d~s~a----------------~v~~~l~~htDY--VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el  193 (487)
T KOG0310|consen  132 DKVVKYWDLSTA----------------YVQAELSGHTDY--VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL  193 (487)
T ss_pred             CceEEEEEcCCc----------------EEEEEecCCcce--eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence            778899999886                444477888854  9999995556779999999999999999976 666666


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      . |..+|..+.+-|.|..+++++ ...|++||+.++.  +..+..|.+.+ ++.....++..|++++-|+.+++|++.+.
T Consensus       194 n-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtV-TcL~l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  194 N-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTV-TCLRLASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             c-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceE-EEEEeecCCceEeecccccceEEEEccce
Confidence            5 889999999999999999997 4689999998554  33444466666 55556678899999999999999996544


Q ss_pred             Ccccee-EeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          265 QTLAYR-ERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       265 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                       +.++. .++...-++... ++++..+++.++|-
T Consensus       271 -Kvv~s~~~~~pvLsiavs-~dd~t~viGmsnGl  302 (487)
T KOG0310|consen  271 -KVVHSWKYPGPVLSIAVS-PDDQTVVIGMSNGL  302 (487)
T ss_pred             -EEEEeeecccceeeEEec-CCCceEEEecccce
Confidence             22222 222222222211 23336677777764

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4e-26  Score=178.33  Aligned_cols=221  Identities=11%  Similarity=0.172  Sum_probs=172.9

Q ss_pred             CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      ..||.++|.|++=+|.....+++|+.||.|++||+....              |...+ .+|.+.|..|++.. +.++..
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--------------~~~~f-~AH~G~V~Gi~v~~-~~~~tv  125 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--------------CIRTF-KAHEGLVRGICVTQ-TSFFTV  125 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhh--------------hhhee-ecccCceeeEEecc-cceEEe
Confidence            368999999999999766789999999999999999876              33333 88999999999987 456666


Q ss_pred             ecCCcEEEEEcCCCc----------------------CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CE
Q 021484          106 YNDELVYLFEKNMGL----------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EY  162 (312)
Q Consensus       106 ~~d~~i~iwd~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~  162 (312)
                      |.|.+|+.|-+....                      .+....+.+|+.....+++.+.-....  +.++.| +|.. ..
T Consensus       126 gdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dt--i~svkf-NpvETsI  202 (433)
T KOG0268|consen  126 GDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADS--ISSVKF-NPVETSI  202 (433)
T ss_pred             cCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCc--eeEEec-CCCcchh
Confidence            789999999854321                      223345678888877788888766654  999999 6654 56


Q ss_pred             EEEeccCceEEEEeccCCeeEE------------------------------------------EeecCccceEEEEEcC
Q 021484          163 VMSGSDCGHLFIWKKKGGKLVR------------------------------------------LMVGDRHVVNQLEPHP  200 (312)
Q Consensus       163 l~~~~~dg~v~iwd~~~~~~~~------------------------------------------~~~~~~~~v~~~~~~p  200 (312)
                      |++|..|+.|.+||++++++++                                          ..++|...|.++.|+|
T Consensus       203 Las~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp  282 (433)
T KOG0268|consen  203 LASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP  282 (433)
T ss_pred             eeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence            6777799999999998776543                                          3346777899999999


Q ss_pred             CCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhh--hhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484          201 HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKI--MKANKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       201 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      .|+.+++||.|++||||..+.+....+- |.+.+  +-+..++.|..++++|+.|+.+++|..+...+
T Consensus       283 tG~EfvsgsyDksIRIf~~~~~~SRdiY-htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  283 TGQEFVSGSYDKSIRIFPVNHGHSRDIY-HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             CcchhccccccceEEEeecCCCcchhhh-hHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence            9999999999999999999877643322 33322  34456788999999999999999998654433

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=8.9e-27  Score=179.87  Aligned_cols=222  Identities=14%  Similarity=0.209  Sum_probs=178.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |.+||.-+++..+-+.-+..   ..+-.|..+|.|+.|+.+. ..+|+|+.||.|++|.+++++              |.
T Consensus       237 iEVWny~~GKlrKDLkYQAq---d~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG~--------------Cl  298 (508)
T KOG0275|consen  237 IEVWNYTTGKLRKDLKYQAQ---DNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETGQ--------------CL  298 (508)
T ss_pred             eeeehhccchhhhhhhhhhh---cceeecccceEEEeecccH-HHhhccCcCCcEEEEEEecch--------------HH
Confidence            46899887765444332211   1122378899999999998 899999999999999999999              66


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+-..|...|+++.|+.++..+.++ .|.++++.-+.++                ++++.|+||...  |+...| .++
T Consensus       299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----------------K~LKEfrGHsSy--vn~a~f-t~d  359 (508)
T KOG0275|consen  299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----------------KCLKEFRGHSSY--VNEATF-TDD  359 (508)
T ss_pred             HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc----------------hhHHHhcCcccc--ccceEE-cCC
Confidence            66667999999999999999877776 5999999999998                899999999955  999999 999


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeec-----------------------------------------------Cccc
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVG-----------------------------------------------DRHV  192 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----------------------------------------------~~~~  192 (312)
                      |..+++++.||+|++|+.++.+++.+++.                                               ..+.
T Consensus       360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGd  439 (508)
T KOG0275|consen  360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGD  439 (508)
T ss_pred             CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCc
Confidence            99999999999999999887665442221                                               1123


Q ss_pred             eEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          193 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       193 v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      ..+.+.+|.|.++...++|+.++.|...++.+ .+++-|.+.++... -+|..+.+++-+.|+.+++|.
T Consensus       440 Fi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~-HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  440 FINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLT-HHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             eEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccc-cCcccchhhhhcccchhhhcC
Confidence            34466788888888888999999999888876 55666777776665 567788999999999999994

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=1.4e-25  Score=190.12  Aligned_cols=211  Identities=16%  Similarity=0.213  Sum_probs=176.1

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      .|.+.|.+++.+|++ ..+++|+.|.+|++||..--.-.  ......+-....... -.-...|.++++||||++|+.+ 
T Consensus       452 AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~--~gt~~k~lsl~~~rt-Lel~ddvL~v~~Spdgk~LaVsL  527 (888)
T KOG0306|consen  452 AHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSV--PGTQKKVLSLKHTRT-LELEDDVLCVSVSPDGKLLAVSL  527 (888)
T ss_pred             ccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEecc--CcccceeeeeccceE-EeccccEEEEEEcCCCcEEEEEe
Confidence            689999999999999 89999999999999998632210  000000101111111 1235779999999999999998 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      -|.++++|-+.+-                +.-..+.||.-+  |.|+.. +|+++.++||+.|.+|+||-++-|.|-+.+
T Consensus       528 LdnTVkVyflDtl----------------KFflsLYGHkLP--V~smDI-S~DSklivTgSADKnVKiWGLdFGDCHKS~  588 (888)
T KOG0306|consen  528 LDNTVKVYFLDTL----------------KFFLSLYGHKLP--VLSMDI-SPDSKLIVTGSADKNVKIWGLDFGDCHKSF  588 (888)
T ss_pred             ccCeEEEEEecce----------------eeeeeecccccc--eeEEec-cCCcCeEEeccCCCceEEeccccchhhhhh
Confidence            5999999999886                677788999966  999999 999999999999999999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      -+|...|.++.|.|....+.++|.|+.|+-||-...+ +..+.+|...+...+ ..+++.++++++.|..+++|...
T Consensus       589 fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLa-v~~~G~~vvs~shD~sIRlwE~t  664 (888)
T KOG0306|consen  589 FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLA-VSPNGSFVVSSSHDKSIRLWERT  664 (888)
T ss_pred             hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeE-EcCCCCeEEeccCCceeEeeecc
Confidence            9999999999999999999999999999999987765 688888998886554 78899999999999999999843

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=1.4e-24  Score=184.06  Aligned_cols=255  Identities=13%  Similarity=0.161  Sum_probs=195.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++|+..+.++...+.+.             .+.+..|.|.+ +++++|...|.+.+||+.+..++              
T Consensus       396 ikiWn~~t~kciRTi~~~-------------y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS~~l~--------------  447 (888)
T KOG0306|consen  396 IKIWNRDTLKCIRTITCG-------------YILASKFVPGD-RYIVLGTKNGELQVFDLASASLV--------------  447 (888)
T ss_pred             EEEEEccCcceeEEeccc-------------cEEEEEecCCC-ceEEEeccCCceEEEEeehhhhh--------------
Confidence            578999888877776653             58899999977 89999999999999999987632              


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+ .+|.+.|++++.+|+++.++++ .|.+|++||..-... .+....  ..-..+..+++. -..  .|.++++ ||+
T Consensus       448 Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-~~gt~~--k~lsl~~~rtLe-l~d--dvL~v~~-Spd  519 (888)
T KOG0306|consen  448 ETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPGTQK--KVLSLKHTRTLE-LED--DVLCVSV-SPD  519 (888)
T ss_pred             hhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-cCcccc--eeeeeccceEEe-ccc--cEEEEEE-cCC
Confidence            222 6899999999999999988886 599999999864311 000000  000011222232 222  3999999 999


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN  238 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~  238 (312)
                      +++|+++--|.+|+||-+++-+....+.+|.-||.++..+|+++.++|||.|++|++|-+.-+.. ..+.+|...++...
T Consensus       520 gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~  599 (888)
T KOG0306|consen  520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ  599 (888)
T ss_pred             CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999987764 77888989886554


Q ss_pred             ccCCCCceeEEecCCceEEEEEecc---------cCcccee-EeecCCCccCCCCCCCeEEEee
Q 021484          239 KQGREDHSRITLTPDVIMHVLRLQR---------RQTLAYR-ERRYNAADFESDEEEGETYLLG  292 (312)
Q Consensus       239 ~~~~~~~~l~s~~~d~~i~i~~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~  292 (312)
                       +.|...++++++.|+.++-||-..         +...+|- .-.|++..+.+...+-.+-.|.
T Consensus       600 -F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  600 -FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             -EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence             667888999999999999997433         2233333 5566666666654443444443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7.1e-26  Score=179.75  Aligned_cols=179  Identities=21%  Similarity=0.394  Sum_probs=143.6

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN  107 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  107 (312)
                      ||..+|.-+.|||+. ++|++++.|..+.+||+.++.+...              ...++...+.+.+|.|||..+++|+
T Consensus       267 gh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~~~~--------------y~~~~~~S~~sc~W~pDg~~~V~Gs  331 (519)
T KOG0293|consen  267 GHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDLRHL--------------YPSGLGFSVSSCAWCPDGFRFVTGS  331 (519)
T ss_pred             cccCceEEEEECCCC-CeEEecCchHheeeccCCcchhhhh--------------cccCcCCCcceeEEccCCceeEecC
Confidence            689999999999998 8999999999999999999984332              2233456667777777777666653


Q ss_pred             -CCcEEEEEcCCCc------------------------------------------------------------------
Q 021484          108 -DELVYLFEKNMGL------------------------------------------------------------------  120 (312)
Q Consensus       108 -d~~i~iwd~~~~~------------------------------------------------------------------  120 (312)
                       |+.+..||+....                                                                  
T Consensus       332 ~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~L  411 (519)
T KOG0293|consen  332 PDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLAL  411 (519)
T ss_pred             CCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEE
Confidence             7777777765432                                                                  


Q ss_pred             -CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEc
Q 021484          121 -GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH  199 (312)
Q Consensus       121 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~  199 (312)
                       .-.++.+..|++...+.++.+.||+....+..-+|--.+..++++|++|+.|+||+..+++++..+.+|...|++|+|+
T Consensus       412 vnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswN  491 (519)
T KOG0293|consen  412 VNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWN  491 (519)
T ss_pred             EEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecC
Confidence             0112345666688888889999998877787778844456899999999999999999999999999999999999999


Q ss_pred             CCCCe-EEEEeCCCcEEEccCCC
Q 021484          200 PHIPM-FATCGIEKTVKLWAPMP  221 (312)
Q Consensus       200 p~~~~-l~t~~~d~~i~iwd~~~  221 (312)
                      |..+. ||++|.||+||||.+..
T Consensus       492 P~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  492 PADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CCCHHHhhccCCCCeEEEecCCc
Confidence            98876 99999999999998764

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=4.5e-25  Score=164.53  Aligned_cols=161  Identities=16%  Similarity=0.232  Sum_probs=138.6

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||++.|..+-|.... +.|++++.|++||+||.+++..++.              +  ....+|+++..+++|++|..+
T Consensus       140 ~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~s--------------L--~~~s~VtSlEvs~dG~ilTia  202 (334)
T KOG0278|consen  140 SGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQS--------------L--EFNSPVTSLEVSQDGRILTIA  202 (334)
T ss_pred             cCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEE--------------E--ecCCCCcceeeccCCCEEEEe
Confidence            4699999999999977 7888889999999999999973322              2  125678999999999999999


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      ..+.|..||..+-                .+++.+.-..   .|.+.+. +|+...+++|++|..++.||..+++.+..+
T Consensus       203 ~gssV~Fwdaksf----------------~~lKs~k~P~---nV~SASL-~P~k~~fVaGged~~~~kfDy~TgeEi~~~  262 (334)
T KOG0278|consen  203 YGSSVKFWDAKSF----------------GLLKSYKMPC---NVESASL-HPKKEFFVAGGEDFKVYKFDYNTGEEIGSY  262 (334)
T ss_pred             cCceeEEeccccc----------------cceeeccCcc---ccccccc-cCCCceEEecCcceEEEEEeccCCceeeec
Confidence            9999999999876                5666555332   3888887 899999999999999999999999998886


Q ss_pred             -ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          187 -VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       187 -~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                       ++|.++|.++.|+|+|...++||+||+|+||....++.
T Consensus       263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence             89999999999999999999999999999999776543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=2e-24  Score=172.55  Aligned_cols=202  Identities=17%  Similarity=0.177  Sum_probs=167.0

Q ss_pred             CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      ++||...|+.+.|+|+. ..+++++.|..|++|......              + ......|..+|+.+..+|.|.||++
T Consensus       257 ~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s--------------~-~~~~~~h~~~V~~ls~h~tgeYlls  320 (506)
T KOG0289|consen  257 LKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSS--------------E-PTSSRPHEEPVTGLSLHPTGEYLLS  320 (506)
T ss_pred             ccCcceEEEEEEeccch-hheeecCCcceEEeecccccc--------------C-ccccccccccceeeeeccCCcEEEE
Confidence            37899999999999998 799999999999999988664              2 2333789999999999999999998


Q ss_pred             e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                      + .|++..+.|++++                ..+...........+++.+| +|||-+|.+|..||.|+|||+.++..+.
T Consensus       321 As~d~~w~Fsd~~~g----------------~~lt~vs~~~s~v~~ts~~f-HpDgLifgtgt~d~~vkiwdlks~~~~a  383 (506)
T KOG0289|consen  321 ASNDGTWAFSDISSG----------------SQLTVVSDETSDVEYTSAAF-HPDGLIFGTGTPDGVVKIWDLKSQTNVA  383 (506)
T ss_pred             ecCCceEEEEEccCC----------------cEEEEEeeccccceeEEeeE-cCCceEEeccCCCceEEEEEcCCccccc
Confidence            7 5999999999887                44444433223234899999 9999999999999999999999999999


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      .|.+|+++|..++|+.+|-+|++++.|+.|++||++..+. .++.-.....+....+...+.+|+.++.+-.|++.+
T Consensus       384 ~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  384 KFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             cCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            9999999999999999999999999999999999998763 444433332334445667788999997777777765

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=7.1e-24  Score=168.46  Aligned_cols=250  Identities=14%  Similarity=0.180  Sum_probs=188.9

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      .|...|.-+.||++| ++||+++.|.+..+|.+....-            +.....+.+|..+|..+.||||.++|+++ 
T Consensus       222 ~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~------------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg  288 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVH------------FKLKKTLVGHSQPVSYIMWSPDDRYLLACG  288 (519)
T ss_pred             hCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcc------------eeeeeeeecccCceEEEEECCCCCeEEecC
Confidence            489999999999999 8999999999999999875431            24445558999999999999999998887 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .+..+.+||+.++                .....+... ....+.+++| .|+|..+++|+.|+.+..||++ |..+..+
T Consensus       289 ~~e~~~lwDv~tg----------------d~~~~y~~~-~~~S~~sc~W-~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W  349 (519)
T KOG0293|consen  289 FDEVLSLWDVDTG----------------DLRHLYPSG-LGFSVSSCAW-CPDGFRFVTGSPDRTIIMWDLD-GNILGNW  349 (519)
T ss_pred             chHheeeccCCcc----------------hhhhhcccC-cCCCcceeEE-ccCCceeEecCCCCcEEEecCC-cchhhcc
Confidence            4888999999998                565555432 1233899999 8999999999999999999997 5556666


Q ss_pred             ecCc-cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          187 VGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       187 ~~~~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      ++-. ..|.+++..++|+++++.+.|..|++++..+.....+.....++ .....+.++.+.+.--.+..+++||+....
T Consensus       350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~i-ts~~iS~d~k~~LvnL~~qei~LWDl~e~~  428 (519)
T KOG0293|consen  350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPI-TSFSISKDGKLALVNLQDQEIHLWDLEENK  428 (519)
T ss_pred             cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCce-eEEEEcCCCcEEEEEcccCeeEEeecchhh
Confidence            6443 57999999999999999999999999998876544333233333 444467788888888888889999986421


Q ss_pred             --------cc-cee---Eeec-CCCccCCCCCCCeEEEeecCCCCCCCCCCCceeeee
Q 021484          266 --------TL-AYR---ERRY-NAADFESDEEEGETYLLGFSDSDASSEGGGNQRECI  310 (312)
Q Consensus       266 --------~~-~~~---~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  310 (312)
                              +. .|+   ++.. +...++++.+++.||+|+-..+.--.+..|-.+.|+
T Consensus       429 lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN  486 (519)
T KOG0293|consen  429 LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN  486 (519)
T ss_pred             HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceee
Confidence                    11 111   3333 336677888888899998877764444444444443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=2.5e-24  Score=189.42  Aligned_cols=258  Identities=18%  Similarity=0.229  Sum_probs=191.8

Q ss_pred             CccceEEEEEcCCCCcEEEEEe--CCCeEEEEEccCCe-ecCCCC--CCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCH-WYSPIS--SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  103 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  103 (312)
                      +...|.++..+|++ ..++||+  .|+.++||+...-- ......  .+.      ....+..|.+.|.|+.|+|||++|
T Consensus        12 ~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k------~l~~m~~h~~sv~CVR~S~dG~~l   84 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPK------HLCTMDDHDGSVNCVRFSPDGSYL   84 (942)
T ss_pred             CCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccch------hheeeccccCceeEEEECCCCCeE
Confidence            45679999999999 8999999  89999999976321 000000  011      112236799999999999999999


Q ss_pred             EEec-CCcEEEEEcCC-CcCCCCCc-CCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC
Q 021484          104 ISYN-DELVYLFEKNM-GLGPSPLS-LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG  180 (312)
Q Consensus       104 ~s~~-d~~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~  180 (312)
                      |+|+ |+.|.||.... +.+..... -.......++....+.+|...  |..++| +|++.+|++++.|++|.+|+.++.
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D--V~Dv~W-sp~~~~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSD--VLDVNW-SPDDSLLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCc--cceecc-CCCccEEEEecccceEEEEccccc
Confidence            9985 88899999874 11111111 112234556778889999977  999999 999999999999999999999999


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-------------------------------------
Q 021484          181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-------------------------------------  223 (312)
Q Consensus       181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-------------------------------------  223 (312)
                      +.+..+.+|.+.|-.+.|.|-|+|||+-+.|++|++|++..-.                                     
T Consensus       162 ~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n  241 (942)
T KOG0973|consen  162 ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN  241 (942)
T ss_pred             eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence            9999999999999999999999999999999999999954200                                     


Q ss_pred             ----------------CCCCCCChhhhhhhhccCC-----C--------C----ceeEEecCCceEEEEEecccCcc---
Q 021484          224 ----------------FPPLPDNAEKIMKANKQGR-----E--------D----HSRITLTPDVIMHVLRLQRRQTL---  267 (312)
Q Consensus       224 ----------------~~~~~~~~~~~~~~~~~~~-----~--------~----~~l~s~~~d~~i~i~~~~~~~~~---  267 (312)
                                      -..+.+|..++ .++.+.+     .        .    ..+++|+.|+.+-||.......+   
T Consensus       242 ~~~~~~~IieR~tWk~~~~LvGH~~p~-evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi  320 (942)
T KOG0973|consen  242 GGKSTIAIIERGTWKVDKDLVGHSAPV-EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI  320 (942)
T ss_pred             CCcceeEEEecCCceeeeeeecCCCce-EEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh
Confidence                            00112333322 2222221     0        1    15678999999999986543322   


Q ss_pred             --------ceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          268 --------AYRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       268 --------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                              .-+.+++++..+....-+|.|+++.|++++
T Consensus       321 ~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  321 HNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             hhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence                    123789999999999999999999998764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=2e-24  Score=168.93  Aligned_cols=231  Identities=10%  Similarity=0.102  Sum_probs=167.5

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCC-CCCCcccc--------------------------c
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS-SDTPVDTF--------------------------C   79 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~--------------------------~   79 (312)
                      .||+..|+++.|+.++ .+||||..+|.|+||...++.....+. .-..+..+                          .
T Consensus       103 tgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~  181 (399)
T KOG0296|consen  103 TGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA  181 (399)
T ss_pred             cCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence            3699999999999999 899999999999999999887554332 10001000                          1


Q ss_pred             ccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCc------CCccc---------------------
Q 021484           80 PRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLS------LSPED---------------------  131 (312)
Q Consensus        80 ~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~------~~~~~---------------------  131 (312)
                      ...++.+|+.++++=.|.|+|+.++++ .||+|++||+.++.......      .+.-.                     
T Consensus       182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~  261 (399)
T KOG0296|consen  182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN  261 (399)
T ss_pred             eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence            224457899999999999999988887 69999999998874110000      00000                     


Q ss_pred             ccCCCCCceEe--------cccCC-ceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC
Q 021484          132 LQKREEPQVYS--------GHRNS-QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI  202 (312)
Q Consensus       132 ~~~~~~~~~~~--------~~~~~-~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~  202 (312)
                      ...++.+....        .+... ..|.++.+ +..-.+.|+|+.||+|.|||+...++..... |..+|..+.|-+ .
T Consensus       262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~-ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t  338 (399)
T KOG0296|consen  262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPS-SSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-T  338 (399)
T ss_pred             cccceEEEecCCCCccccccchhhhhhhhhccc-ccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-c
Confidence            01111111111        11111 11333343 4455678999999999999998776655554 888999999998 7


Q ss_pred             CeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          203 PMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       203 ~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      .+|++++.+|.|+.||.+++.+ .++.+|...++..+ .+++.+++++++.|+..++|++.
T Consensus       339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~-ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA-LSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             chheeeccCceEEeeeccccceEEEEecCchheeEEE-EcCCCcEEEEecCCCeEEEEecC
Confidence            8999999999999999999875 77889999997765 67899999999999999999864

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.1e-23  Score=158.04  Aligned_cols=219  Identities=12%  Similarity=0.143  Sum_probs=168.0

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||.+.|-.++|+|..+.+|++++.|.+|++||++.+++.              ..+ .. ...-.-+.|+|+|++++.+
T Consensus        61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~--------------~~i-~~-~~eni~i~wsp~g~~~~~~  124 (313)
T KOG1407|consen   61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT--------------ARI-ET-KGENINITWSPDGEYIAVG  124 (313)
T ss_pred             cCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE--------------EEe-ec-cCcceEEEEcCCCCEEEEe
Confidence            5799999999999998899999999999999999998742              222 22 2223467899999988887


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                       .|..|...|.++.                +.....+ ..  ..+.-++| +.++.+++..+.-|.|.|.....-+++..
T Consensus       125 ~kdD~it~id~r~~----------------~~~~~~~-~~--~e~ne~~w-~~~nd~Fflt~GlG~v~ILsypsLkpv~s  184 (313)
T KOG1407|consen  125 NKDDRITFIDARTY----------------KIVNEEQ-FK--FEVNEISW-NNSNDLFFLTNGLGCVEILSYPSLKPVQS  184 (313)
T ss_pred             cCcccEEEEEeccc----------------ceeehhc-cc--ceeeeeee-cCCCCEEEEecCCceEEEEeccccccccc
Confidence             5999999999875                3333332 22  23788888 67777777777789999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      +++|.....++.|+|+|++||+|+.|..+.+||+...-. ..+. .....+....++.++++|++++.|..|-|-++.++
T Consensus       185 i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is-RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG  263 (313)
T KOG1407|consen  185 IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS-RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG  263 (313)
T ss_pred             cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec-cccCceEEEEeccCcceeeccCccceEEeEecccC
Confidence            999999999999999999999999999999999986543 4444 33444455668889999999999999877776666


Q ss_pred             CccceeEeecCCCccCCC
Q 021484          265 QTLAYRERRYNAADFESD  282 (312)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~  282 (312)
                      ...-.+........++-|
T Consensus       264 d~~~eI~~~~~t~tVAWH  281 (313)
T KOG1407|consen  264 DRVWEIPCEGPTFTVAWH  281 (313)
T ss_pred             CeEEEeeccCCceeEEec
Confidence            444333333333333333

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=5.7e-24  Score=187.18  Aligned_cols=217  Identities=17%  Similarity=0.298  Sum_probs=172.9

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCC---eecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC---HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  104 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  104 (312)
                      .|.+.|+|+.|+|+| .+||+|+.|+.|.||.....   ...........+..+.....+.+|...|..++|+|++.+|+
T Consensus        67 ~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv  145 (942)
T KOG0973|consen   67 DHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV  145 (942)
T ss_pred             cccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence            489999999999999 89999999999999998741   11111112234444455556689999999999999999999


Q ss_pred             Eec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484          105 SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       105 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                      +++ |++|.+||..+.                +.++.+.+|...  |..+.| +|-|+||++-+.|++|+||.+.+....
T Consensus       146 S~s~DnsViiwn~~tF----------------~~~~vl~~H~s~--VKGvs~-DP~Gky~ASqsdDrtikvwrt~dw~i~  206 (942)
T KOG0973|consen  146 SVSLDNSVIIWNAKTF----------------ELLKVLRGHQSL--VKGVSW-DPIGKYFASQSDDRTLKVWRTSDWGIE  206 (942)
T ss_pred             EecccceEEEEccccc----------------eeeeeeeccccc--ccceEE-CCccCeeeeecCCceEEEEEcccceee
Confidence            975 999999999987                899999999977  999999 999999999999999999996532111


Q ss_pred             ----------------------------------------------------EEeecCccceEEEEEcCC-----CC---
Q 021484          184 ----------------------------------------------------RLMVGDRHVVNQLEPHPH-----IP---  203 (312)
Q Consensus       184 ----------------------------------------------------~~~~~~~~~v~~~~~~p~-----~~---  203 (312)
                                                                          ..+-+|.+++.++.|+|.     .+   
T Consensus       207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~  286 (942)
T KOG0973|consen  207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT  286 (942)
T ss_pred             EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence                                                                145689999999999982     11   


Q ss_pred             ---------eEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          204 ---------MFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       204 ---------~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                               .+|+|+.|++|.||.....++ .....-....+....|++++..|++++.||+|.++.+...
T Consensus       287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  287 STQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             ccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence                     578899999999999866653 2332233333455568999999999999999999988654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.1e-24  Score=182.01  Aligned_cols=218  Identities=17%  Similarity=0.226  Sum_probs=175.6

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE-ccCCCeEEEec
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-SNTSELLISYN  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~~  107 (312)
                      |.+-|++++..-++ +.|++++.|-+|++|+...+.            .+|...+ ..|.+.|.++++ .++..++|+++
T Consensus        72 HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~------------~~c~sti-r~H~DYVkcla~~ak~~~lvaSgG  137 (735)
T KOG0308|consen   72 HSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDN------------TFCMSTI-RTHKDYVKCLAYIAKNNELVASGG  137 (735)
T ss_pred             hHhHHhhHHhhcCC-CceEEecCCceEEEeecccCc------------chhHhhh-hcccchheeeeecccCceeEEecC
Confidence            88889999999888 799999999999999998663            2355555 889999999999 67777888875


Q ss_pred             -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                       |+.|.+||++++....  ....+.    .....+. |+...  |.+++. ++.|..+++|+..+.|++||.++++.+..
T Consensus       138 LD~~IflWDin~~~~~l--~~s~n~----~t~~sl~sG~k~s--iYSLA~-N~t~t~ivsGgtek~lr~wDprt~~kimk  208 (735)
T KOG0308|consen  138 LDRKIFLWDINTGTATL--VASFNN----VTVNSLGSGPKDS--IYSLAM-NQTGTIIVSGGTEKDLRLWDPRTCKKIMK  208 (735)
T ss_pred             CCccEEEEEccCcchhh--hhhccc----cccccCCCCCccc--eeeeec-CCcceEEEecCcccceEEeccccccceee
Confidence             9999999999762100  000000    1111222 66655  999998 89999999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      +++|+..|..+..+++|..++++|.||+|++||+..++ +.++..|...+.+.. .+++=..+.+|+.|+.|..-+++..
T Consensus       209 LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~-~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  209 LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ-SSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe-eCCCcceEEecCCCCcEEecccCCc
Confidence            99999999999999999999999999999999999886 577777887775544 3345567899999999999999886


Q ss_pred             Ccccee
Q 021484          265 QTLAYR  270 (312)
Q Consensus       265 ~~~~~~  270 (312)
                      .+...+
T Consensus       288 ~~~tli  293 (735)
T KOG0308|consen  288 AKSTLI  293 (735)
T ss_pred             hhheEe
Confidence            554444

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=5.5e-24  Score=177.91  Aligned_cols=216  Identities=16%  Similarity=0.248  Sum_probs=178.9

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+|||..+.+..+.+...          |..+|-+++|+.   ..+.+|+.|+.|..+|++..+.              .
T Consensus       241 v~iwD~~~~k~~~~~~~~----------h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~--------------~  293 (484)
T KOG0305|consen  241 VQIWDVKEQKKTRTLRGS----------HASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQH--------------V  293 (484)
T ss_pred             EEEEehhhccccccccCC----------cCceeEEEeccC---ceEEEecCCCcEEEEEEecchh--------------h
Confidence            467777765544433331          788999999993   6899999999999999998762              2


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-  158 (312)
                      ...+.+|...|..++|++++.++|++ .|+.+.|||....                .+...+..|...  |..++| +| 
T Consensus       294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~----------------~p~~~~~~H~aA--VKA~aw-cP~  354 (484)
T KOG0305|consen  294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP----------------EPKFTFTEHTAA--VKALAW-CPW  354 (484)
T ss_pred             hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc----------------cccEEEecccee--eeEeee-CCC
Confidence            22348899999999999999999997 5999999999766                688889999977  999999 55 


Q ss_pred             CCCEEEEec--cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEccCCCCC-CCCCCCChhh
Q 021484          159 NDEYVMSGS--DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTD-FPPLPDNAEK  233 (312)
Q Consensus       159 ~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~--~d~~i~iwd~~~~~-~~~~~~~~~~  233 (312)
                      ....||+|+  .|+.|++||..+++.+..+.. ...|.++.|++..+.|+++.  .+..|.||+..+.. ...+.+|...
T Consensus       355 q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~R  433 (484)
T KOG0305|consen  355 QSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSR  433 (484)
T ss_pred             ccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcce
Confidence            567788865  599999999999999888764 46899999999998776654  67799999998876 4778889999


Q ss_pred             hhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          234 IMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       234 ~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ++.++ +++++..+++++.|.++++|++-..
T Consensus       434 Vl~la-~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  434 VLYLA-LSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eEEEE-ECCCCCEEEEecccCcEEeccccCC
Confidence            87766 7899999999999999999998654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.92  E-value=7.1e-24  Score=172.87  Aligned_cols=264  Identities=12%  Similarity=0.106  Sum_probs=180.1

Q ss_pred             CeeecccCccc-eeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021484            1 MWQFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   79 (312)
Q Consensus         1 v~~wd~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~   79 (312)
                      |++||++-... .+.|...       +|.-...|.++.|++.+ ..|++.+.....+++|-...++......++-+..+.
T Consensus       191 v~~wDf~gMdas~~~fr~l-------~P~E~h~i~sl~ys~Tg-~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~  262 (641)
T KOG0772|consen  191 VKFWDFQGMDASMRSFRQL-------QPCETHQINSLQYSVTG-DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMY  262 (641)
T ss_pred             EEEEecccccccchhhhcc-------CcccccccceeeecCCC-CeEEEEecCcceeEEccCCceeeeeeccchhhhhhh
Confidence            57899874331 1112221       12235679999999999 677777777899999988777666665555554432


Q ss_pred             ccccccCCCccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc---CCceeeEEE
Q 021484           80 PRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR---NSQTVKGVN  154 (312)
Q Consensus        80 ~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~  154 (312)
                         ..++|...+++.+|+|..+ .+++ +.||++++||+...+               +..+.++...   ...+++.++
T Consensus       263 ---nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k---------------~q~qVik~k~~~g~Rv~~tsC~  324 (641)
T KOG0772|consen  263 ---NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK---------------SQLQVIKTKPAGGKRVPVTSCA  324 (641)
T ss_pred             ---ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch---------------hheeEEeeccCCCcccCceeee
Confidence               2278999999999999885 4555 569999999998752               3334443221   113488999


Q ss_pred             EecCCCCEEEEeccCceEEEEeccCC--ee-EEEeecCcc--ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCC
Q 021484          155 FFGPNDEYVMSGSDCGHLFIWKKKGG--KL-VRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPL  227 (312)
Q Consensus       155 ~~s~~~~~l~~~~~dg~v~iwd~~~~--~~-~~~~~~~~~--~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~  227 (312)
                      | ++++++||+|+.||.|.+|+....  .+ ...-++|..  .|++++||++|++|++-+.|+++++||++..+  +...
T Consensus       325 ~-nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~  403 (641)
T KOG0772|consen  325 W-NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR  403 (641)
T ss_pred             c-CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence            9 999999999999999999997532  22 223357876  89999999999999999999999999998754  2332


Q ss_pred             CCChh-hhhhhhccCCCCceeEEecCC------ceEEEEEecccCc----------cceeEeecCCCccCCCCCCCeEEE
Q 021484          228 PDNAE-KIMKANKQGREDHSRITLTPD------VIMHVLRLQRRQT----------LAYRERRYNAADFESDEEEGETYL  290 (312)
Q Consensus       228 ~~~~~-~~~~~~~~~~~~~~l~s~~~d------~~i~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~  290 (312)
                      .+-.. -.....+++++..++++|+.-      +.+.+++-.+...          .+...+-|....+..+..+|.+++
T Consensus       404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v  483 (641)
T KOG0772|consen  404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV  483 (641)
T ss_pred             cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence            22221 123445588899999997753      6788887433211          111244555555555555566665


Q ss_pred             e
Q 021484          291 L  291 (312)
Q Consensus       291 ~  291 (312)
                      +
T Consensus       484 y  484 (641)
T KOG0772|consen  484 Y  484 (641)
T ss_pred             E
Confidence            5

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.92  E-value=4.9e-24  Score=184.23  Aligned_cols=211  Identities=17%  Similarity=0.274  Sum_probs=173.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      +++||+.+..+..++..           |...|.++...+   ..+++|+.|.+|++|++.++.              +.
T Consensus       273 ~rvWd~~sg~C~~~l~g-----------h~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~--------------~l  324 (537)
T KOG0274|consen  273 ERVWDCSTGECTHSLQG-----------HTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGA--------------CL  324 (537)
T ss_pred             EEeEecCCCcEEEEecC-----------CCceEEEEEccC---ceEeeccCCceEEEEeccCcc--------------eE
Confidence            58999999988777764           788899998876   578889999999999999887              33


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+ .+|..+|.++..+  +.+++++ .|+.|++||+.++                ++++.+.+|...  |.++.+ ...
T Consensus       325 ~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~----------------~cl~sl~gH~~~--V~sl~~-~~~  382 (537)
T KOG0274|consen  325 NLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG----------------KCLKSLSGHTGR--VYSLIV-DSE  382 (537)
T ss_pred             EEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhc----------------eeeeeecCCcce--EEEEEe-cCc
Confidence            333 6699999999988  6677776 5999999999988                899999999977  999977 444


Q ss_pred             CCEEEEeccCceEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCC-Chhhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-NAEKIMK  236 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~  236 (312)
                       +.+++|+.|+.|++||+++. +++..+.+|.+-|..+.+  .++.|++++.|++|++||...++. ..+.+ +...+..
T Consensus       383 -~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~  459 (537)
T KOG0274|consen  383 -NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSA  459 (537)
T ss_pred             -ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEE
Confidence             89999999999999999999 999999999988866655  778999999999999999988764 55554 3333322


Q ss_pred             hhccCCCCceeEEecCCceEEEEEecccCcc
Q 021484          237 ANKQGREDHSRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       237 ~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      .. .  ....+++.+.++.+++||++.....
T Consensus       460 l~-~--~~~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  460 LA-L--GKEEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             ee-c--CcceEEEEecCCeeEEEecccCchh
Confidence            22 1  2468899999999999999877443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.1e-22  Score=148.48  Aligned_cols=205  Identities=16%  Similarity=0.206  Sum_probs=167.4

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC----CCeE
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELL  103 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l  103 (312)
                      .|++.|+|.+|+|.| +++++|+.|.+|++..+....+...          -...-+..|.+.|..++|-.+    +.+|
T Consensus        87 hhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~----------g~dle~nmhdgtirdl~fld~~~s~~~il  155 (350)
T KOG0641|consen   87 HHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNAT----------GHDLEFNMHDGTIRDLAFLDDPESGGAIL  155 (350)
T ss_pred             ccCccEEEEEecCcc-CeEEecCCCceEEEEeccccccccc----------CcceeeeecCCceeeeEEecCCCcCceEE
Confidence            489999999999999 8999999999999987765442111          111122678999999999654    3488


Q ss_pred             EEec--CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe
Q 021484          104 ISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       104 ~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~  181 (312)
                      +++.  |..|++=|...+                +..+.+.+|..-  |..+ | +-++-.+++|+.|.+|++||++-..
T Consensus       156 ~s~gagdc~iy~tdc~~g----------------~~~~a~sghtgh--ilal-y-swn~~m~~sgsqdktirfwdlrv~~  215 (350)
T KOG0641|consen  156 ASAGAGDCKIYITDCGRG----------------QGFHALSGHTGH--ILAL-Y-SWNGAMFASGSQDKTIRFWDLRVNS  215 (350)
T ss_pred             EecCCCcceEEEeecCCC----------------CcceeecCCccc--EEEE-E-EecCcEEEccCCCceEEEEeeeccc
Confidence            8853  777888888877                788889999965  7776 3 5678999999999999999999888


Q ss_pred             eEEEeec--C-----ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484          182 LVRLMVG--D-----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPD  253 (312)
Q Consensus       182 ~~~~~~~--~-----~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  253 (312)
                      ++.++..  |     ...|..++..|.|++|++|..|..-.+||++.++ +..+..|...+ .+..+++...++++++.|
T Consensus       216 ~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadi-r~vrfsp~a~yllt~syd  294 (350)
T KOG0641|consen  216 CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADI-RCVRFSPGAHYLLTCSYD  294 (350)
T ss_pred             eeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccce-eEEEeCCCceEEEEeccc
Confidence            8877742  2     2578999999999999999999999999999988 46777777766 666789999999999999


Q ss_pred             ceEEEEEeccc
Q 021484          254 VIMHVLRLQRR  264 (312)
Q Consensus       254 ~~i~i~~~~~~  264 (312)
                      ..|++-|++..
T Consensus       295 ~~ikltdlqgd  305 (350)
T KOG0641|consen  295 MKIKLTDLQGD  305 (350)
T ss_pred             ceEEEeecccc
Confidence            99999998753

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3e-23  Score=159.54  Aligned_cols=201  Identities=15%  Similarity=0.183  Sum_probs=156.3

Q ss_pred             CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eE
Q 021484           26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LL  103 (312)
Q Consensus        26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l  103 (312)
                      ++.|.++|++++.+-   .++++|+.|.+|+|||+++..              .. ..+..|.+.|+++.|.+.-.  .|
T Consensus        39 ~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k~~--------------ql-g~ll~HagsitaL~F~~~~S~shL  100 (362)
T KOG0294|consen   39 FSAHAGSITALAVSG---PYVASGSSDETIHIYDMRKRK--------------QL-GILLSHAGSITALKFYPPLSKSHL  100 (362)
T ss_pred             ccccccceeEEEecc---eeEeccCCCCcEEEEeccchh--------------hh-cceeccccceEEEEecCCcchhhe
Confidence            356999999999964   699999999999999999775              22 22267899999999999874  56


Q ss_pred             EEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021484          104 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  182 (312)
Q Consensus       104 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~  182 (312)
                      +++ .||.|.+|+....                .++..+++|...  |+.++. +|.+++.++.+.|+.++.|++-.|+.
T Consensus       101 lS~sdDG~i~iw~~~~W----------------~~~~slK~H~~~--Vt~lsi-HPS~KLALsVg~D~~lr~WNLV~Gr~  161 (362)
T KOG0294|consen  101 LSGSDDGHIIIWRVGSW----------------ELLKSLKAHKGQ--VTDLSI-HPSGKLALSVGGDQVLRTWNLVRGRV  161 (362)
T ss_pred             eeecCCCcEEEEEcCCe----------------EEeeeecccccc--cceeEe-cCCCceEEEEcCCceeeeehhhcCcc
Confidence            665 6999999999887                799999999987  999999 89999999999999999999877654


Q ss_pred             EEEeecC---------------------------------------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          183 VRLMVGD---------------------------------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       183 ~~~~~~~---------------------------------------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      -..+...                                       ...+.++.|. ++..|++|+.|+.|++||.....
T Consensus       162 a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~  240 (362)
T KOG0294|consen  162 AFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDT  240 (362)
T ss_pred             ceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCc
Confidence            2222110                                       0112233332 34567888889999999988765


Q ss_pred             -CCCCCCChhhhhhhhcc-CCCCceeEEecCCceEEEEEeccc
Q 021484          224 -FPPLPDNAEKIMKANKQ-GREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       224 -~~~~~~~~~~~~~~~~~-~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                       +..+.+|.+.+-..... .+++.+|++.+.||.|+|||+...
T Consensus       241 ~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  241 PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence             35667788887555433 346789999999999999998765

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.92  E-value=5.4e-24  Score=173.54  Aligned_cols=226  Identities=16%  Similarity=0.181  Sum_probs=161.6

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  105 (312)
                      ++|...|.++++.|.| ..|++|+.|.+|++||+..-..        ..+.  .+.+.......|.+++|++.|. +|+.
T Consensus       164 ~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMda--------s~~~--fr~l~P~E~h~i~sl~ys~Tg~~iLvv  232 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDA--------SMRS--FRQLQPCETHQINSLQYSVTGDQILVV  232 (641)
T ss_pred             cCCceEEEEeeecCCC-ceeeeccccceEEEEecccccc--------cchh--hhccCcccccccceeeecCCCCeEEEE
Confidence            5789999999999999 8999999999999999985431        1111  2233334456799999999997 4555


Q ss_pred             ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-eEE
Q 021484          106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVR  184 (312)
Q Consensus       106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~  184 (312)
                      +...+.+|+|..........  .  +-+...-+..-+||...  +++.+|++.+.+.+++++.||++++||+...+ .+.
T Consensus       233 sg~aqakl~DRdG~~~~e~~--K--GDQYI~Dm~nTKGHia~--lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q  306 (641)
T KOG0772|consen  233 SGSAQAKLLDRDGFEIVEFS--K--GDQYIRDMYNTKGHIAE--LTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ  306 (641)
T ss_pred             ecCcceeEEccCCceeeeee--c--cchhhhhhhccCCceee--eeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence            67889999997654100000  0  00000112233577765  99999944456789999999999999987543 333


Q ss_pred             Eee-----cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC---C-CCChh-hhhhhhccCCCCceeEEecCCc
Q 021484          185 LMV-----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP---L-PDNAE-KIMKANKQGREDHSRITLTPDV  254 (312)
Q Consensus       185 ~~~-----~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~---~-~~~~~-~~~~~~~~~~~~~~l~s~~~d~  254 (312)
                      .++     +..-+++.++|+|+++.+|+|+.||.|.+|+..+.....   + ..|.. .-+++..++.++++|++=+.|.
T Consensus       307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~  386 (641)
T KOG0772|consen  307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD  386 (641)
T ss_pred             EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC
Confidence            333     223478999999999999999999999999986654322   1 23433 2356777899999999999999


Q ss_pred             eEEEEEecccCccce
Q 021484          255 IMHVLRLQRRQTLAY  269 (312)
Q Consensus       255 ~i~i~~~~~~~~~~~  269 (312)
                      .+++||+++.++...
T Consensus       387 tLKvWDLrq~kkpL~  401 (641)
T KOG0772|consen  387 TLKVWDLRQFKKPLN  401 (641)
T ss_pred             ceeeeeccccccchh
Confidence            999999998765543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.4e-24  Score=184.63  Aligned_cols=206  Identities=19%  Similarity=0.221  Sum_probs=161.9

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEEe-cCC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-NDE  109 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d~  109 (312)
                      .+..++|+....++|||++..|.|.+||+...-           +. .....+..|...+.++.|++.. .+|++| .||
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-----------rn-k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg  156 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI-----------RN-KLLTVFNEHERSANKLDFHSTEPNILISGSQDG  156 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccc-----------cc-hhhhHhhhhccceeeeeeccCCccEEEecCCCc
Confidence            456788987666899999999999999998521           00 2223348899999999999977 478887 499


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEEEeec
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVG  188 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~  188 (312)
                      .|++||++..                +...++.+....  |++|.|....+.+++++.+.|.|.+||++.. ++...+.+
T Consensus       157 ~vK~~DlR~~----------------~S~~t~~~nSES--iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A  218 (839)
T KOG0269|consen  157 TVKCWDLRSK----------------KSKSTFRSNSES--IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA  218 (839)
T ss_pred             eEEEEeeecc----------------cccccccccchh--hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc
Confidence            9999999987                667777776644  9999994446888999999999999999854 56677889


Q ss_pred             CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC-CCChhhhhhhhccCCCCceeE-Ee--cCCceEEEEEeccc
Q 021484          189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL-PDNAEKIMKANKQGREDHSRI-TL--TPDVIMHVLRLQRR  264 (312)
Q Consensus       189 ~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-s~--~~d~~i~i~~~~~~  264 (312)
                      |.++|.++.|+|++.+|||||.|++|+||+..+.+.... ..+....+....|-|+..+.+ +.  ..|..|+|||+++.
T Consensus       219 H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  219 HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence            999999999999999999999999999999987664332 234555566777777655444 33  34789999999987


Q ss_pred             Ccc
Q 021484          265 QTL  267 (312)
Q Consensus       265 ~~~  267 (312)
                      -.+
T Consensus       299 YIP  301 (839)
T KOG0269|consen  299 YIP  301 (839)
T ss_pred             ccc
Confidence            544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.3e-22  Score=156.32  Aligned_cols=217  Identities=12%  Similarity=0.168  Sum_probs=160.6

Q ss_pred             ceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCcc
Q 021484           11 ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH   90 (312)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (312)
                      ..+.+.+.+.+-.+.++||...|.+++.+|-+ ..+++++.|++|++||++..+              |...+   +...
T Consensus        81 tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~--------------cqg~l---~~~~  142 (311)
T KOG1446|consen   81 TIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKK--------------CQGLL---NLSG  142 (311)
T ss_pred             ceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCC--------------CceEE---ecCC
Confidence            34556666666666679999999999999988 899999999999999999776              22222   1222


Q ss_pred             EEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc-cCCceeeEEEEecCCCCEEEEecc
Q 021484           91 ITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSGSD  168 (312)
Q Consensus        91 i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~s~~~~~l~~~~~  168 (312)
                      -..+||.|+|.++|.+. .+.|++||+++..+              .+-.++.-. ......+.+.| +|+|++|+.++.
T Consensus       143 ~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk--------------gPF~tf~i~~~~~~ew~~l~F-S~dGK~iLlsT~  207 (311)
T KOG1446|consen  143 RPIAAFDPEGLIFALANGSELIKLYDLRSFDK--------------GPFTTFSITDNDEAEWTDLEF-SPDGKSILLSTN  207 (311)
T ss_pred             CcceeECCCCcEEEEecCCCeEEEEEecccCC--------------CCceeEccCCCCccceeeeEE-cCCCCEEEEEeC
Confidence            34679999999999985 44999999987521              122233222 11133899999 999999999999


Q ss_pred             CceEEEEeccCCeeEEEeecCccc---eEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCC
Q 021484          169 CGHLFIWKKKGGKLVRLMVGDRHV---VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGRED  244 (312)
Q Consensus       169 dg~v~iwd~~~~~~~~~~~~~~~~---v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~  244 (312)
                      .+.+++.|.-+|..+..+.++...   ..+.+|.|+++++++|+.||+|.+|+++++.. ..+.+.......+..+.  .
T Consensus       208 ~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fn--P  285 (311)
T KOG1446|consen  208 ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFN--P  285 (311)
T ss_pred             CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccC--C
Confidence            999999999999998888776532   25788999999999999999999999998874 44443222222333333  3


Q ss_pred             ceeEEecCCceEEEEEec
Q 021484          245 HSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       245 ~~l~s~~~d~~i~i~~~~  262 (312)
                      .+.+-.+.+..+-+|-..
T Consensus       286 ~~~mf~sa~s~l~fw~p~  303 (311)
T KOG1446|consen  286 RYAMFVSASSNLVFWLPD  303 (311)
T ss_pred             ceeeeeecCceEEEEecc
Confidence            566667778888888543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=1.3e-22  Score=152.72  Aligned_cols=201  Identities=11%  Similarity=0.100  Sum_probs=169.6

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      ||..+++.+.++.+| .+|.+++.|.+..+|-...++              ..-.+ .+|.+.|+++..+-+.+.++++ 
T Consensus         8 GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGe--------------rlGty-~GHtGavW~~Did~~s~~liTGS   71 (327)
T KOG0643|consen    8 GHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGE--------------RLGTY-DGHTGAVWCCDIDWDSKHLITGS   71 (327)
T ss_pred             cCccccceEEecCCC-cEEEEecCCCCceEEEecCCc--------------eeeee-cCCCceEEEEEecCCcceeeecc
Confidence            699999999999999 899999999999999987776              22222 8999999999999999999997 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-----CceEEEEecc---
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-----CGHLFIWKKK---  178 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-----dg~v~iwd~~---  178 (312)
                      .|.++++||++++                +.+..++..   .+|..+.| +++|++++...+     .+.|.++|++   
T Consensus        72 AD~t~kLWDv~tG----------------k~la~~k~~---~~Vk~~~F-~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~  131 (327)
T KOG0643|consen   72 ADQTAKLWDVETG----------------KQLATWKTN---SPVKRVDF-SFGGNLILASTDKQMGYTCFVSVFDIRDDS  131 (327)
T ss_pred             ccceeEEEEcCCC----------------cEEEEeecC---CeeEEEee-ccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence            5999999999998                676666533   34999999 999999887764     4679999987   


Q ss_pred             ----CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecC
Q 021484          179 ----GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTP  252 (312)
Q Consensus       179 ----~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  252 (312)
                          ..+++..+..+...++.+-|.|-+.++++|..||.|..||++++.  +.....|...+ .....+++..++++++.
T Consensus       132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I-nd~q~s~d~T~FiT~s~  210 (327)
T KOG0643|consen  132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI-NDLQFSRDRTYFITGSK  210 (327)
T ss_pred             hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccc-ccccccCCcceEEeccc
Confidence                456678888888999999999999999999999999999999875  24444455544 55668889999999999


Q ss_pred             CceEEEEEecccC
Q 021484          253 DVIMHVLRLQRRQ  265 (312)
Q Consensus       253 d~~i~i~~~~~~~  265 (312)
                      |.+-++||+.+-.
T Consensus       211 Dttakl~D~~tl~  223 (327)
T KOG0643|consen  211 DTTAKLVDVRTLE  223 (327)
T ss_pred             Cccceeeecccee
Confidence            9999999987654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=2e-23  Score=164.13  Aligned_cols=166  Identities=16%  Similarity=0.289  Sum_probs=136.6

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  105 (312)
                      .+|...=++++|||..--.|++|.--+.|++|...++.+.            .-...+.+|...|-.++|||... +|++
T Consensus       208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~------------vd~~Pf~gH~~SVEDLqWSptE~~vfaS  275 (440)
T KOG0302|consen  208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK------------VDQRPFTGHTKSVEDLQWSPTEDGVFAS  275 (440)
T ss_pred             cccCccceeeecccccccccccCccccceEeeeeccCcee------------ecCccccccccchhhhccCCccCceEEe
Confidence            5788999999999954347889988899999999988753            12222367999999999999876 8888


Q ss_pred             ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC---Ce
Q 021484          106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---GK  181 (312)
Q Consensus       106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~---~~  181 (312)
                      ++ |+.|+|||++.+..              +.....+.|...  |.-++| +....+|++|+.||+++|||+++   ++
T Consensus       276 cS~DgsIrIWDiRs~~~--------------~~~~~~kAh~sD--VNVISW-nr~~~lLasG~DdGt~~iwDLR~~~~~~  338 (440)
T KOG0302|consen  276 CSCDGSIRIWDIRSGPK--------------KAAVSTKAHNSD--VNVISW-NRREPLLASGGDDGTLSIWDLRQFKSGQ  338 (440)
T ss_pred             eecCceEEEEEecCCCc--------------cceeEeeccCCc--eeeEEc-cCCcceeeecCCCceEEEEEhhhccCCC
Confidence            75 99999999998621              233344677766  999999 77777999999999999999874   67


Q ss_pred             eEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCC
Q 021484          182 LVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMP  221 (312)
Q Consensus       182 ~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~  221 (312)
                      ++..++-|..+|+++.|+|.... |++++.|.+|.+||+..
T Consensus       339 pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  339 PVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             cceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            89999999999999999997654 88888999999999864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3.3e-22  Score=154.05  Aligned_cols=233  Identities=14%  Similarity=0.160  Sum_probs=183.7

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec-
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-  107 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-  107 (312)
                      ...|+++.|+++| ..+++++.|-++++||..+++.              ...+ ..+...+..++|..... .+.++. 
T Consensus        14 ~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~--------------~~ti-~skkyG~~~~~Fth~~~~~i~sStk   77 (311)
T KOG1446|consen   14 NGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQ--------------VKTI-NSKKYGVDLACFTHHSNTVIHSSTK   77 (311)
T ss_pred             CCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCce--------------eeEe-ecccccccEEEEecCCceEEEccCC
Confidence            5679999999999 7888999999999999998873              3333 45566778888877665 455543 


Q ss_pred             -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                       |.+|+..++.++                +.++.|.||...  |.+++. +|.+..+++++.|++|++||++..++...+
T Consensus        78 ~d~tIryLsl~dN----------------kylRYF~GH~~~--V~sL~~-sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l  138 (311)
T KOG1446|consen   78 EDDTIRYLSLHDN----------------KYLRYFPGHKKR--VNSLSV-SPKDDTFLSSSLDKTVRLWDLRVKKCQGLL  138 (311)
T ss_pred             CCCceEEEEeecC----------------ceEEEcCCCCce--EEEEEe-cCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence             999999999988                899999999976  999998 999999999999999999999988877666


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC---CC--CCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF---PP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .....+  .++|.|+|-++|++.....|++||++....   .+  +......-+....+++++.+++-.+..+.+++.|.
T Consensus       139 ~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA  216 (311)
T KOG1446|consen  139 NLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA  216 (311)
T ss_pred             ecCCCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence            543333  488999999999999878999999987532   22  22233444566678889999998888888888875


Q ss_pred             cccC-------------ccceeEeecCCCccCCCCCCCeEEEeecCCCCCC
Q 021484          262 QRRQ-------------TLAYRERRYNAADFESDEEEGETYLLGFSDSDAS  299 (312)
Q Consensus       262 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  299 (312)
                      -.+.             ...-..+.|++..+.++.++|++.+|+.+.+..-
T Consensus       217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v  267 (311)
T KOG1446|consen  217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV  267 (311)
T ss_pred             cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence            3321             1122367788999999999999999999777543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=4.3e-23  Score=164.95  Aligned_cols=200  Identities=16%  Similarity=0.238  Sum_probs=162.2

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      .|..+|+.+..+|.| .+|++++.|++..+.|++++.+..            ...- ....-.+++.+|+|||.+|.++ 
T Consensus       301 ~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt------------~vs~-~~s~v~~ts~~fHpDgLifgtgt  366 (506)
T KOG0289|consen  301 PHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLT------------VVSD-ETSDVEYTSAAFHPDGLIFGTGT  366 (506)
T ss_pred             cccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEE------------EEee-ccccceeEEeeEcCCceEEeccC
Confidence            388899999999999 899999999999999999987421            1111 1223458999999999999998 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .|+.|++||+.++                .....|.+|..+  |..++| +.+|.||+++++|+.|++||++.-+...++
T Consensus       367 ~d~~vkiwdlks~----------------~~~a~Fpght~~--vk~i~F-sENGY~Lat~add~~V~lwDLRKl~n~kt~  427 (506)
T KOG0289|consen  367 PDGVVKIWDLKSQ----------------TNVAKFPGHTGP--VKAISF-SENGYWLATAADDGSVKLWDLRKLKNFKTI  427 (506)
T ss_pred             CCceEEEEEcCCc----------------cccccCCCCCCc--eeEEEe-ccCceEEEEEecCCeEEEEEehhhccccee
Confidence            5999999999987                678889999977  999999 999999999999999999999988877777


Q ss_pred             ecCc-cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC---CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          187 VGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       187 ~~~~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .... ..|.++.|.+.|.+|+.++.|=+|++++-.+..   ...+..|. ......++.....++++++.|..++++.+
T Consensus       428 ~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s-g~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  428 QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS-GLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc-cccceeeecccceEEeeccchhheEEeec
Confidence            5432 479999999999999999888888888755544   34444444 23455666667889999999998888753

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.9e-23  Score=179.43  Aligned_cols=202  Identities=12%  Similarity=0.150  Sum_probs=157.7

Q ss_pred             CcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-Ce
Q 021484           24 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-EL  102 (312)
Q Consensus        24 ~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~  102 (312)
                      +.+.||.+.|.++.|+.++  +|++++.|.+||+|++...++              +..  -.|.+-|+|++|+|-. ++
T Consensus       363 ~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~C--------------L~~--F~HndfVTcVaFnPvDDry  424 (712)
T KOG0283|consen  363 CEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKEC--------------LKV--FSHNDFVTCVAFNPVDDRY  424 (712)
T ss_pred             hhhhccchhheecccccCC--eeEeccccccEEeecCCCcce--------------eeE--EecCCeeEEEEecccCCCc
Confidence            4446999999999999975  999999999999999998873              322  4689999999999955 69


Q ss_pred             EEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe
Q 021484          103 LISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       103 l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~  181 (312)
                      +++|+ |+.|+||++...                 .+.....-.  ..|++++| .|+|++.+.|+.+|.+++|+....+
T Consensus       425 FiSGSLD~KvRiWsI~d~-----------------~Vv~W~Dl~--~lITAvcy-~PdGk~avIGt~~G~C~fY~t~~lk  484 (712)
T KOG0283|consen  425 FISGSLDGKVRLWSISDK-----------------KVVDWNDLR--DLITAVCY-SPDGKGAVIGTFNGYCRFYDTEGLK  484 (712)
T ss_pred             EeecccccceEEeecCcC-----------------eeEeehhhh--hhheeEEe-ccCCceEEEEEeccEEEEEEccCCe
Confidence            99986 999999999764                 333333233  34999999 9999999999999999999998877


Q ss_pred             eEEEeec--C------ccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC-CCCCCChhhh-hhhhccCCCCceeEEe
Q 021484          182 LVRLMVG--D------RHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF-PPLPDNAEKI-MKANKQGREDHSRITL  250 (312)
Q Consensus       182 ~~~~~~~--~------~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~s~  250 (312)
                      ....+.-  |      ...|+.+.|.|...- ++..+.|..|||+|.+...+ ..+.+..+.- ...+.+..++.+++++
T Consensus       485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~  564 (712)
T KOG0283|consen  485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA  564 (712)
T ss_pred             EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence            7654431  1      127999999987664 77778899999999976553 4444333221 1233456699999999


Q ss_pred             cCCceEEEEEecc
Q 021484          251 TPDVIMHVLRLQR  263 (312)
Q Consensus       251 ~~d~~i~i~~~~~  263 (312)
                      +.|..|++|++..
T Consensus       565 seDs~VYiW~~~~  577 (712)
T KOG0283|consen  565 SEDSWVYIWKNDS  577 (712)
T ss_pred             ecCceEEEEeCCC
Confidence            9999999999743

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.1e-23  Score=155.14  Aligned_cols=235  Identities=12%  Similarity=0.161  Sum_probs=176.4

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc--CCCeEEE
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLIS  105 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s  105 (312)
                      .|.+.|.++...-.+ .+|||+++|++|+|+..+....           . ....-+.+|.++|..++|..  .|.+||+
T Consensus         9 ~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~-----------s-~ll~~L~Gh~GPVwqv~wahPk~G~iLAS   75 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQ-----------S-KLLAELTGHSGPVWKVAWAHPKFGTILAS   75 (299)
T ss_pred             hhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCC-----------c-eeeeEecCCCCCeeEEeecccccCcEeeE
Confidence            388889988888888 8999999999999999986541           0 11222389999999999987  7889999


Q ss_pred             ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC--CCEEEEeccCceEEEEeccCC-e
Q 021484          106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGG-K  181 (312)
Q Consensus       106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~--~~~l~~~~~dg~v~iwd~~~~-~  181 (312)
                      ++ ||+|.||.-+++              .......+..|...  |++++| .|.  |-.|++++.||.|.|.+.+.. .
T Consensus        76 csYDgkVIiWke~~g--------------~w~k~~e~~~h~~S--VNsV~w-apheygl~LacasSDG~vsvl~~~~~g~  138 (299)
T KOG1332|consen   76 CSYDGKVIIWKEENG--------------RWTKAYEHAAHSAS--VNSVAW-APHEYGLLLACASSDGKVSVLTYDSSGG  138 (299)
T ss_pred             eecCceEEEEecCCC--------------chhhhhhhhhhccc--ceeecc-cccccceEEEEeeCCCcEEEEEEcCCCC
Confidence            86 999999998776              22445566778866  999999 665  557899999999999987754 2


Q ss_pred             --eEEEeecCccceEEEEEcCC---C-----------CeEEEEeCCCcEEEccCCCCC---CCCCCCChhhhhhhhccCC
Q 021484          182 --LVRLMVGDRHVVNQLEPHPH---I-----------PMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGR  242 (312)
Q Consensus       182 --~~~~~~~~~~~v~~~~~~p~---~-----------~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~  242 (312)
                        ..+....|.-.|++++|.|.   |           +.|++|+.|..|+||+.....   ...+.+|...+...+|.+.
T Consensus       139 w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~  218 (299)
T KOG1332|consen  139 WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS  218 (299)
T ss_pred             ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence              23445689999999999996   4           459999999999999998864   2457888888866654333


Q ss_pred             ---CCceeEEecCCceEEEEEecccC------------cccee-EeecCCCccCCCCCCCeEEEee
Q 021484          243 ---EDHSRITLTPDVIMHVLRLQRRQ------------TLAYR-ERRYNAADFESDEEEGETYLLG  292 (312)
Q Consensus       243 ---~~~~l~s~~~d~~i~i~~~~~~~------------~~~~~-~~~~~~~~~~~~~~~~~v~~~~  292 (312)
                         ....+++++.|+.+.||......            ...|. .++..+..|+....++.|.++-
T Consensus       219 ~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  219 VGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             cCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence               25688999999999999865321            11222 4455555555555555565553

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=8.8e-24  Score=162.96  Aligned_cols=220  Identities=15%  Similarity=0.257  Sum_probs=176.7

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      -||+++|..++-.... .++.+++.|.+.+||.++++.              |...+ .+|.+.|.+++|++.+.+++++
T Consensus       145 ~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Esg~--------------CL~~Y-~GH~GSVNsikfh~s~~L~lTa  208 (481)
T KOG0300|consen  145 EGHKDGIWHVAADSTQ-PICGTASADHTARIWSLESGA--------------CLATY-TGHTGSVNSIKFHNSGLLLLTA  208 (481)
T ss_pred             cccccceeeehhhcCC-cceeecccccceeEEeecccc--------------ceeee-cccccceeeEEeccccceEEEc
Confidence            5899999999998866 599999999999999999998              55555 8999999999999999998886


Q ss_pred             -cCCcEEEEEc------CCCcCCCCCc------------------CCcccccCCCCCceEecccCCceeeEEEEecCCCC
Q 021484          107 -NDELVYLFEK------NMGLGPSPLS------------------LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE  161 (312)
Q Consensus       107 -~d~~i~iwd~------~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~  161 (312)
                       +|++..||..      .+...+...+                  .......-..++..+.+|...  |.+..| -..|+
T Consensus       209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v--V~a~dW-L~gg~  285 (481)
T KOG0300|consen  209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV--VSACDW-LAGGQ  285 (481)
T ss_pred             cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc--eEehhh-hcCcc
Confidence             5999999983      2221111100                  000001112355678888866  899998 67899


Q ss_pred             EEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC--CCCCCCCChhhhhhhhc
Q 021484          162 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--DFPPLPDNAEKIMKANK  239 (312)
Q Consensus       162 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~  239 (312)
                      .+++++.|.+-.+||+.+++++..+.+|....+.++-+|..+++++.+.|-+.++||++..  .+..|.+|...+.... 
T Consensus       286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~v-  364 (481)
T KOG0300|consen  286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVV-  364 (481)
T ss_pred             eeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEE-
Confidence            9999999999999999999999999999999999999999999999999999999999843  2467888888875443 


Q ss_pred             cCCCCceeEEecCCceEEEEEecccCcc
Q 021484          240 QGREDHSRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       240 ~~~~~~~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      +. .+..+++++.|.++++||+++...+
T Consensus       365 F~-~dd~vVSgSDDrTvKvWdLrNMRsp  391 (481)
T KOG0300|consen  365 FN-TDDRVVSGSDDRTVKVWDLRNMRSP  391 (481)
T ss_pred             Ee-cCCceeecCCCceEEEeeeccccCc
Confidence            32 3457899999999999999875433

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=2.8e-23  Score=158.56  Aligned_cols=215  Identities=16%  Similarity=0.234  Sum_probs=161.0

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc--ccccccCCCccEEEEEEccCCC-eE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC--PRHLIGKNNIHITGLAYSNTSE-LL  103 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l  103 (312)
                      ..|.+.|+++...+..++++++|+.||.|.+||++.......  ..--....|  .+.-..+|...|.++.|-|-.. ++
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~--s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA--SGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh--ccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            459999999999998879999999999999999985431100  000011112  2222367899999999999776 66


Q ss_pred             EEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC---CCCEEEEeccCceEEEEeccC
Q 021484          104 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP---NDEYVMSGSDCGHLFIWKKKG  179 (312)
Q Consensus       104 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~---~~~~l~~~~~dg~v~iwd~~~  179 (312)
                      .+++ |.++++||..+.                +....|+- .  ..|.+-++ +|   ...++++|..+-.|++.|+.+
T Consensus       118 tssSFDhtlKVWDtnTl----------------Q~a~~F~m-e--~~VYsham-Sp~a~sHcLiA~gtr~~~VrLCDi~S  177 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTL----------------QEAVDFKM-E--GKVYSHAM-SPMAMSHCLIAAGTRDVQVRLCDIAS  177 (397)
T ss_pred             ecccccceEEEeecccc----------------eeeEEeec-C--ceeehhhc-ChhhhcceEEEEecCCCcEEEEeccC
Confidence            6665 999999999875                34444432 2  23666666 55   355788999999999999999


Q ss_pred             CeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCC--CCCCC--------------CCChhhhhhhhccCC
Q 021484          180 GKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT--DFPPL--------------PDNAEKIMKANKQGR  242 (312)
Q Consensus       180 ~~~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~--~~~~~--------------~~~~~~~~~~~~~~~  242 (312)
                      |....++.+|.+.|.++.|+|...+ |++|+.||.||+||++..  +...+              +.|...+ .-.++..
T Consensus       178 Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv-ngla~tS  256 (397)
T KOG4283|consen  178 GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV-NGLAWTS  256 (397)
T ss_pred             CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee-eeeeecc
Confidence            9999999999999999999999988 899999999999998743  22211              1233333 3334677


Q ss_pred             CCceeEEecCCceEEEEEeccc
Q 021484          243 EDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       243 ~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ++.++.+.+.|..+++|+...+
T Consensus       257 d~~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  257 DARYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             cchhhhhccCccceEEeecccC
Confidence            8899999999999999997654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=7.6e-23  Score=163.93  Aligned_cols=205  Identities=14%  Similarity=0.181  Sum_probs=158.2

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s  105 (312)
                      .||+..|.+++|+..-.++||+|+.|.+|++||+.+++              +.. .+..|...|.+++|+|.. .+|++
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~--------------p~~-s~~~~~k~Vq~l~wh~~~p~~LLs  304 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK--------------PKS-SITHHGKKVQTLEWHPYEPSVLLS  304 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC--------------cce-ehhhcCCceeEEEecCCCceEEEe
Confidence            47999999999999877899999999999999999997              222 336789999999999976 58888


Q ss_pred             ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeE
Q 021484          106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLV  183 (312)
Q Consensus       106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~  183 (312)
                      |+ |++|.+.|.+...               ..-..++ ..+.  |-.++|.......+++++.||+|+-+|+|.. +++
T Consensus       305 Gs~D~~V~l~D~R~~~---------------~s~~~wk-~~g~--VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v  366 (463)
T KOG0270|consen  305 GSYDGTVALKDCRDPS---------------NSGKEWK-FDGE--VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV  366 (463)
T ss_pred             ccccceEEeeeccCcc---------------ccCceEE-eccc--eEEEEecCCCceeEEEecCCceEEeeecCCCCCce
Confidence            75 9999999998531               1222333 2223  8889994344567888999999999999865 899


Q ss_pred             EEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCCCCCCCChhhh--hhhhccCCC-CceeEEecCCceEEEE
Q 021484          184 RLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPDNAEKI--MKANKQGRE-DHSRITLTPDVIMHVL  259 (312)
Q Consensus       184 ~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~l~s~~~d~~i~i~  259 (312)
                      .++++|.+.|.++++++.-+. ++|++.|++|++|++..........|.-.+  +.+....++ ...++.++..+.+++|
T Consensus       367 wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vw  446 (463)
T KOG0270|consen  367 WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVW  446 (463)
T ss_pred             eEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEe
Confidence            999999999999999987765 889999999999998876654444343322  233333343 4566677777889999


Q ss_pred             Eeccc
Q 021484          260 RLQRR  264 (312)
Q Consensus       260 ~~~~~  264 (312)
                      |+...
T Consensus       447 d~~~~  451 (463)
T KOG0270|consen  447 DIFTN  451 (463)
T ss_pred             ecccC
Confidence            97655

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.8e-24  Score=182.72  Aligned_cols=201  Identities=18%  Similarity=0.274  Sum_probs=174.5

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  107 (312)
                      |...|.++..-... +.+++|+.|..+-+|.+..-.              +... +.+|..+|.++.|++...+|+++ .
T Consensus        27 hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~--------------~i~S-~~~hespIeSl~f~~~E~Llaagsa   90 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPN--------------AITS-LTGHESPIESLTFDTSERLLAAGSA   90 (825)
T ss_pred             hhhhhceeeeeccc-eeeccCCCceeeccccccCCc--------------hhhe-eeccCCcceeeecCcchhhhccccc
Confidence            66777888774455 899999999999999987543              1112 38999999999999999888887 5


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  187 (312)
                      +|+|++||++..                +.++++.+|...  +.++.| +|-+.|.+.|+.|+.+++||.+..-+...+.
T Consensus        91 sgtiK~wDleeA----------------k~vrtLtgh~~~--~~sv~f-~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~  151 (825)
T KOG0267|consen   91 SGTIKVWDLEEA----------------KIVRTLTGHLLN--ITSVDF-HPYGEFFASGSTDTDLKIWDIRKKGCSHTYK  151 (825)
T ss_pred             CCceeeeehhhh----------------hhhhhhhccccC--cceeee-ccceEEeccccccccceehhhhccCceeeec
Confidence            999999999987                788999999976  999999 9999999999999999999999888999999


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       188 ~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      +|...|..+.|+|+|++++.++.|.+++|||+..+++ ..|..|...+.... +++..-++.+|+.|.++++||+.+..
T Consensus       152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle-~hp~e~Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE-FHPLEVLLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc-cCchhhhhccCCCCceeeeeccceeE
Confidence            9999999999999999999999999999999988885 66777777775544 77777889999999999999998653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.1e-24  Score=184.00  Aligned_cols=191  Identities=17%  Similarity=0.307  Sum_probs=159.8

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      -+|..+|.++.|++.. .+|++|+.+|+|++||+...+              ....+ .+|...+.++.|+|-+.+.+++
T Consensus        67 ~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk--------------~vrtL-tgh~~~~~sv~f~P~~~~~a~g  130 (825)
T KOG0267|consen   67 TGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK--------------IVRTL-TGHLLNITSVDFHPYGEFFASG  130 (825)
T ss_pred             eccCCcceeeecCcch-hhhcccccCCceeeeehhhhh--------------hhhhh-hccccCcceeeeccceEEeccc
Confidence            4799999999999988 899999999999999999876              23333 8899999999999999999887


Q ss_pred             c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                      + |..+.+||.+..                .+...+.+|...  +..+.| +|+|++++.+++|..++|||...|+.+..
T Consensus       131 Stdtd~~iwD~Rk~----------------Gc~~~~~s~~~v--v~~l~l-sP~Gr~v~~g~ed~tvki~d~~agk~~~e  191 (825)
T KOG0267|consen  131 STDTDLKIWDIRKK----------------GCSHTYKSHTRV--VDVLRL-SPDGRWVASGGEDNTVKIWDLTAGKLSKE  191 (825)
T ss_pred             cccccceehhhhcc----------------CceeeecCCcce--eEEEee-cCCCceeeccCCcceeeeecccccccccc
Confidence            4 999999999865                588889998865  899999 99999999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPD  253 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  253 (312)
                      |+.|.+.+..+.|+|..-.+++|+.|++|++||+++.+. .........+ ....+.+++..+.+|...
T Consensus       192 f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v-~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  192 FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGV-RSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             cccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCc-eeeeecCCceeeecCchh
Confidence            999999999999999999999999999999999997653 2222222333 333355555555554444

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4e-23  Score=167.30  Aligned_cols=198  Identities=12%  Similarity=0.190  Sum_probs=159.1

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~  106 (312)
                      +|..+|..+.|+|++...|++|+.|+.+++||+.+..              . ..-+.+|.+.|.+.+|+|... ++++|
T Consensus       108 ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--------------v-~~~l~~htDYVR~g~~~~~~~hivvtG  172 (487)
T KOG0310|consen  108 AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--------------V-QAELSGHTDYVRCGDISPANDHIVVTG  172 (487)
T ss_pred             hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--------------E-EEEecCCcceeEeeccccCCCeEEEec
Confidence            4889999999999887899999999999999999875              2 223389999999999999764 88887


Q ss_pred             c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEE
Q 021484          107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVR  184 (312)
Q Consensus       107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~  184 (312)
                      + ||.|++||++..                .....--.|..+  |..+.+ -|.|..+++++ ...|++||+-+| +.+.
T Consensus       173 sYDg~vrl~DtR~~----------------~~~v~elnhg~p--Ve~vl~-lpsgs~iasAg-Gn~vkVWDl~~G~qll~  232 (487)
T KOG0310|consen  173 SYDGKVRLWDTRSL----------------TSRVVELNHGCP--VESVLA-LPSGSLIASAG-GNSVKVWDLTTGGQLLT  232 (487)
T ss_pred             CCCceEEEEEeccC----------------CceeEEecCCCc--eeeEEE-cCCCCEEEEcC-CCeEEEEEecCCceehh
Confidence            6 999999999875                222222245544  999999 78889988876 468999999854 5555


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .+..|...|+|+.+..++..|++++.|+.+++||+.+.+...--....+++.+. .++++..++.|..+|.+-+-+.
T Consensus       233 ~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsia-vs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  233 SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIA-VSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             hhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEE-ecCCCceEEEecccceeeeehh
Confidence            555599999999999999999999999999999977766432223566776665 6778899999999998877743

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=7.1e-23  Score=157.39  Aligned_cols=231  Identities=12%  Similarity=0.160  Sum_probs=167.2

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN  107 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  107 (312)
                      .|..+|+++.|+|.. .+|++|+.|++|++||+..-..         .+.|.  .  .....+|.++.|+|.|.+|+.+.
T Consensus       170 DH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~sa---------KrA~K--~--~qd~~~vrsiSfHPsGefllvgT  235 (430)
T KOG0640|consen  170 DHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSA---------KRAFK--V--FQDTEPVRSISFHPSGEFLLVGT  235 (430)
T ss_pred             hccCcccceeecchh-heEEeccCCCeEEEEecccHHH---------HHHHH--H--hhccceeeeEeecCCCceEEEec
Confidence            488999999999998 8999999999999999975421         11111  1  12356899999999999888874


Q ss_pred             -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCc---eEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484          108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ---VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                       -..+++||+++.                ++..   .-.+|...  |+++.| ++.+++.++++.||.|++||--+++++
T Consensus       236 dHp~~rlYdv~T~----------------QcfvsanPd~qht~a--i~~V~Y-s~t~~lYvTaSkDG~IklwDGVS~rCv  296 (430)
T KOG0640|consen  236 DHPTLRLYDVNTY----------------QCFVSANPDDQHTGA--ITQVRY-SSTGSLYVTASKDGAIKLWDGVSNRCV  296 (430)
T ss_pred             CCCceeEEeccce----------------eEeeecCcccccccc--eeEEEe-cCCccEEEEeccCCcEEeeccccHHHH
Confidence             778999999875                2211   12345555  999999 999999999999999999998889999


Q ss_pred             EEee-cCc-cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCC--hh-hhh-hhhccCCCCceeE-EecCCce
Q 021484          184 RLMV-GDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDN--AE-KIM-KANKQGREDHSRI-TLTPDVI  255 (312)
Q Consensus       184 ~~~~-~~~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~--~~-~~~-~~~~~~~~~~~l~-s~~~d~~  255 (312)
                      .++. +|. ..|.+..|..+++++++.+.|..+++|.+.+++. ..+.+.  .+ ... .-+.+.....+++ ---..+.
T Consensus       297 ~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~s  376 (430)
T KOG0640|consen  297 RTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNS  376 (430)
T ss_pred             HHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCc
Confidence            8884 565 4788999999999999999999999999998863 333322  11 111 1111222223332 2223355


Q ss_pred             EEEEEec-----------ccCccceeEeecCCCccCCCCCCCeEEEe
Q 021484          256 MHVLRLQ-----------RRQTLAYRERRYNAADFESDEEEGETYLL  291 (312)
Q Consensus       256 i~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  291 (312)
                      +.-||.+           ......|+.++|.+..+....++-+.-+|
T Consensus       377 lcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFW  423 (430)
T KOG0640|consen  377 LCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFW  423 (430)
T ss_pred             eeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeee
Confidence            6666644           34556677888888888877777665554

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-21  Score=151.39  Aligned_cols=214  Identities=14%  Similarity=0.248  Sum_probs=156.0

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  105 (312)
                      .||...|++++|+.+| ..|++.+.|++|++|+++......    ...+    ..++   .-+..+.++|.||.+ ++++
T Consensus        83 KgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~e----Hr~~----R~nv---e~dhpT~V~FapDc~s~vv~  150 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKE----HRCI----RQNV---EYDHPTRVVFAPDCKSVVVS  150 (420)
T ss_pred             hccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhh----hhHh----hccc---cCCCceEEEECCCcceEEEE
Confidence            3899999999999999 899999999999999998643210    0001    1111   123567899999998 5555


Q ss_pred             e-cCCcEEEEEcCCCcC-CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484          106 Y-NDELVYLFEKNMGLG-PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       106 ~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                      . +..++++|.+..... .-......++     ....-+.|...  +..+-. ...+.+|++++.|..|.+|+++ |+.+
T Consensus       151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D-----~~~f~~kh~v~--~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~L  221 (420)
T KOG2096|consen  151 VKRGNKLCVYKLVKKTDGSGSHHFVHID-----NLEFERKHQVD--IINIGI-AGNAKYIMSASLDTKICLWDLK-GQLL  221 (420)
T ss_pred             EccCCEEEEEEeeecccCCCCccccccc-----ccccchhcccc--eEEEee-cCCceEEEEecCCCcEEEEecC-Ccee
Confidence            5 588999998765421 0000001111     11111223333  666666 6788999999999999999999 9999


Q ss_pred             EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC---CC------CCCCCCCChhhhhhhhccCCCCceeEEecCCc
Q 021484          184 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM---PT------DFPPLPDNAEKIMKANKQGREDHSRITLTPDV  254 (312)
Q Consensus       184 ~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  254 (312)
                      ..+......-+..+.||+|+++++++.---|++|.+-   .+      +...+.+|...+... +++++++..++.+.||
T Consensus       222 ~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~-aFsn~S~r~vtvSkDG  300 (420)
T KOG2096|consen  222 QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAA-AFSNSSTRAVTVSKDG  300 (420)
T ss_pred             eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeee-eeCCCcceeEEEecCC
Confidence            9888776777889999999999999999999999963   22      235567888888554 4888999999999999


Q ss_pred             eEEEEEec
Q 021484          255 IMHVLRLQ  262 (312)
Q Consensus       255 ~i~i~~~~  262 (312)
                      .+++||.+
T Consensus       301 ~wriwdtd  308 (420)
T KOG2096|consen  301 KWRIWDTD  308 (420)
T ss_pred             cEEEeecc
Confidence            99999863

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.90  E-value=1.5e-23  Score=166.50  Aligned_cols=211  Identities=10%  Similarity=0.137  Sum_probs=166.3

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  107 (312)
                      ..++|+++.|.+++ ..+++++.|+.+++|++...++               .+.+.+|.+.|+++.|......++++ .
T Consensus       218 s~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r~---------------~~TLsGHtdkVt~ak~~~~~~~vVsgs~  281 (459)
T KOG0288|consen  218 SLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLRL---------------RHTLSGHTDKVTAAKFKLSHSRVVSGSA  281 (459)
T ss_pred             cCCCcceeeecCCC-ceEEeecCCCceeeeeccchhh---------------hhhhcccccceeeehhhccccceeeccc
Confidence            46789999999999 7888889999999999998862               23337899999999998776667776 4


Q ss_pred             CCcEEEEEcCCCcC-----------------------CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE
Q 021484          108 DELVYLFEKNMGLG-----------------------PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM  164 (312)
Q Consensus       108 d~~i~iwd~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~  164 (312)
                      |.+|++||+.+...                       -++..+..|+.....+......+.   .|+++.. ++++..|+
T Consensus       282 DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~l-s~~g~~lL  357 (459)
T KOG0288|consen  282 DRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDL-SMDGLELL  357 (459)
T ss_pred             cchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc---ceeeEee-ccCCeEEe
Confidence            99999999876531                       122334555555556666655543   3999998 99999999


Q ss_pred             EeccCceEEEEeccCCeeEEEeecC----ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC-CCC-Chhhhhhhh
Q 021484          165 SGSDCGHLFIWKKKGGKLVRLMVGD----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-LPD-NAEKIMKAN  238 (312)
Q Consensus       165 ~~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-~~~-~~~~~~~~~  238 (312)
                      +++.|.++.+.|+++.+....+.+.    ....+.+.|||++.|+++||.||.|+||++.++++.. +.. +.++.+...
T Consensus       358 sssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~  437 (459)
T KOG0288|consen  358 SSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSL  437 (459)
T ss_pred             eecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEE
Confidence            9999999999999998887777532    2347889999999999999999999999999998632 222 333245666


Q ss_pred             ccCCCCceeEEecCCceEEEE
Q 021484          239 KQGREDHSRITLTPDVIMHVL  259 (312)
Q Consensus       239 ~~~~~~~~l~s~~~d~~i~i~  259 (312)
                      .|.+.+..+++.+.++.+.+|
T Consensus       438 ~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  438 SWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EEcCCCchhhcccCCcceEec
Confidence            688899999999999999998

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.4e-22  Score=150.69  Aligned_cols=205  Identities=16%  Similarity=0.215  Sum_probs=157.4

Q ss_pred             CCCccceEEEEEc-C-CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--e
Q 021484           27 PMNSIRLNAIVID-P-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--L  102 (312)
Q Consensus        27 ~~h~~~v~~~~~~-p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~  102 (312)
                      .||++||..++|- | .| .+||+++.||+|.||.-..++.             ........|...|++++|.|.+-  .
T Consensus        53 ~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g~w-------------~k~~e~~~h~~SVNsV~wapheygl~  118 (299)
T KOG1332|consen   53 TGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENGRW-------------TKAYEHAAHSASVNSVAWAPHEYGLL  118 (299)
T ss_pred             cCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCCch-------------hhhhhhhhhcccceeecccccccceE
Confidence            4799999999994 5 55 8999999999999999988864             22233367999999999999874  6


Q ss_pred             EEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC---C-----------CEEEEec
Q 021484          103 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---D-----------EYVMSGS  167 (312)
Q Consensus       103 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~---~-----------~~l~~~~  167 (312)
                      |+++ +||.|.|.+.+....             ....+....|...  |++++| .|.   |           +.|++|+
T Consensus       119 LacasSDG~vsvl~~~~~g~-------------w~t~ki~~aH~~G--vnsVsw-apa~~~g~~~~~~~~~~~krlvSgG  182 (299)
T KOG1332|consen  119 LACASSDGKVSVLTYDSSGG-------------WTTSKIVFAHEIG--VNSVSW-APASAPGSLVDQGPAAKVKRLVSGG  182 (299)
T ss_pred             EEEeeCCCcEEEEEEcCCCC-------------ccchhhhhccccc--cceeee-cCcCCCccccccCcccccceeeccC
Confidence            6665 699999999876410             0233455678766  999999 675   4           5699999


Q ss_pred             cCceEEEEeccCCe--eEEEeecCccceEEEEEcCCC----CeEEEEeCCCcEEEccCCCC--CC-CCCCCChhhhhhhh
Q 021484          168 DCGHLFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHI----PMFATCGIEKTVKLWAPMPT--DF-PPLPDNAEKIMKAN  238 (312)
Q Consensus       168 ~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~----~~l~t~~~d~~i~iwd~~~~--~~-~~~~~~~~~~~~~~  238 (312)
                      .|..|+||+...++  ...++.+|.+.|.+++|.|.-    .++|+++.||++.||..+..  .. .++...-..++-..
T Consensus       183 cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~v  262 (299)
T KOG1332|consen  183 CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRV  262 (299)
T ss_pred             CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEE
Confidence            99999999988753  334588999999999999975    35999999999999987632  11 22222223334445


Q ss_pred             ccCCCCceeEEecCCceEEEEEe
Q 021484          239 KQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       239 ~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .|+..+++|.....|+.+.+|.=
T Consensus       263 SWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  263 SWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             EEeccccEEEEecCCcEEEEEEe
Confidence            57888999999999999999963

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=1.1e-21  Score=150.29  Aligned_cols=198  Identities=14%  Similarity=0.204  Sum_probs=148.6

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      -.+.|.+++|||....++++|+.|++||+|++.. +..             .+ .....|.++|.+++|+.+|..++++ 
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-------------~~-ka~~~~~~PvL~v~WsddgskVf~g~   91 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-------------VP-KAQQSHDGPVLDVCWSDDGSKVFSGG   91 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcc-------------cc-hhhhccCCCeEEEEEccCCceEEeec
Confidence            3678999999996657888999999999999986 342             22 3337789999999999999877776 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC--CEEEEeccCceEEEEeccCCeeEE
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND--EYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~--~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                      .|+.+++||+.++                 ....+..|..+  |..+.|. +..  +.|++|+.|.+|+.||++...++.
T Consensus        92 ~Dk~~k~wDL~S~-----------------Q~~~v~~Hd~p--vkt~~wv-~~~~~~cl~TGSWDKTlKfWD~R~~~pv~  151 (347)
T KOG0647|consen   92 CDKQAKLWDLASG-----------------QVSQVAAHDAP--VKTCHWV-PGMNYQCLVTGSWDKTLKFWDTRSSNPVA  151 (347)
T ss_pred             cCCceEEEEccCC-----------------Ceeeeeecccc--eeEEEEe-cCCCcceeEecccccceeecccCCCCeee
Confidence            6999999999986                 56677788866  9999994 333  489999999999999999999998


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      ++.. .++++++..  -..+++.+..++.|.+|+++...  ........+....+.....+....+.|+-+|.+.+..+.
T Consensus       152 t~~L-PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id  228 (347)
T KOG0647|consen  152 TLQL-PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYID  228 (347)
T ss_pred             eeec-cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecC
Confidence            8874 457777654  45667888889999999997653  222322333333333334444445667777777776665


Q ss_pred             c
Q 021484          263 R  263 (312)
Q Consensus       263 ~  263 (312)
                      .
T Consensus       229 ~  229 (347)
T KOG0647|consen  229 D  229 (347)
T ss_pred             C
Confidence            5

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.90  E-value=4.3e-23  Score=154.00  Aligned_cols=233  Identities=15%  Similarity=0.192  Sum_probs=188.7

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      -||++.|.....+.+. .+.|+++.|-+-++||.-++..+         .+       ..|..-|.+++|+.+.++|+++
T Consensus        56 eghkgavw~~~l~~na-~~aasaaadftakvw~a~tgdel---------hs-------f~hkhivk~~af~~ds~~lltg  118 (334)
T KOG0278|consen   56 EGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVTGDEL---------HS-------FEHKHIVKAVAFSQDSNYLLTG  118 (334)
T ss_pred             eccCcceeeeecCchh-hhhhhhcccchhhhhhhhhhhhh---------hh-------hhhhheeeeEEecccchhhhcc
Confidence            4899999999999987 78899999999999999988732         11       3467779999999999999887


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                       .+..++|||++...               .+.+.+.+|...  |..+-| -...+.+++.+.|++|++||.+++..++.
T Consensus       119 g~ekllrvfdln~p~---------------App~E~~ghtg~--Ir~v~w-c~eD~~iLSSadd~tVRLWD~rTgt~v~s  180 (334)
T KOG0278|consen  119 GQEKLLRVFDLNRPK---------------APPKEISGHTGG--IRTVLW-CHEDKCILSSADDKTVRLWDHRTGTEVQS  180 (334)
T ss_pred             chHHHhhhhhccCCC---------------CCchhhcCCCCc--ceeEEE-eccCceEEeeccCCceEEEEeccCcEEEE
Confidence             59999999998763               566788899977  999999 56777788889999999999999999998


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      +. ...+|+++..+++|+++.++. .+.|++||..+..+ +.+. .+.. +..+..+|+...+++|+.|+.++.+|..++
T Consensus       181 L~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~n-V~SASL~P~k~~fVaGged~~~~kfDy~Tg  256 (334)
T KOG0278|consen  181 LE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCN-VESASLHPKKEFFVAGGEDFKVYKFDYNTG  256 (334)
T ss_pred             Ee-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-Cccc-cccccccCCCceEEecCcceEEEEEeccCC
Confidence            87 457899999999999986664 68999999988764 3222 2222 345556778899999999999999998765


Q ss_pred             Cccce-----------eEeecCCCccCCCCCCCeEEEeecCCCCC
Q 021484          265 QTLAY-----------RERRYNAADFESDEEEGETYLLGFSDSDA  298 (312)
Q Consensus       265 ~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  298 (312)
                      ..+..           ..++|++..-+++.++|.+.+|....+.-
T Consensus       257 eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  257 EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            43322           26788888889999999998888765543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=1.6e-22  Score=162.76  Aligned_cols=215  Identities=16%  Similarity=0.194  Sum_probs=172.6

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecC-CCCCCCCcc-cccccccc-cCCCccEEEEEEccCCCeEE
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS-PISSDTPVD-TFCPRHLI-GKNNIHITGLAYSNTSELLI  104 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~-~~~~~~~~-~~~~~~i~~~~~~~~~~~l~  104 (312)
                      .|..+|.+++++|++ .+.++++.+++|.-|++.+++... .++.+.... .+.+.... ..|...+.+++.+++|++|+
T Consensus       140 ~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla  218 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA  218 (479)
T ss_pred             cccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence            588999999999998 899999999999999999887431 111110000 11111111 37889999999999999999


Q ss_pred             Eec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484          105 SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       105 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                      ++. |..|.||+..+.                +.++.+.+|.+.  |.+++| -.....|++++.|+.|++|++.....+
T Consensus       219 tgg~d~~v~Iw~~~t~----------------ehv~~~~ghr~~--V~~L~f-r~gt~~lys~s~Drsvkvw~~~~~s~v  279 (479)
T KOG0299|consen  219 TGGRDRHVQIWDCDTL----------------EHVKVFKGHRGA--VSSLAF-RKGTSELYSASADRSVKVWSIDQLSYV  279 (479)
T ss_pred             ecCCCceEEEecCccc----------------chhhcccccccc--eeeeee-ecCccceeeeecCCceEEEehhHhHHH
Confidence            985 999999999998                788999999977  999999 667778999999999999999998889


Q ss_pred             EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          184 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       184 ~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      .++.+|...|.++.-...++.+.+|+.|+++++|++.......+.++...+ .+. ...+..-+++|+.+|.|.+|++..
T Consensus       280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~si-dcv-~~In~~HfvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSI-DCV-AFINDEHFVSGSDNGSIALWSLLK  357 (479)
T ss_pred             HHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCe-eeE-EEecccceeeccCCceEEEeeecc
Confidence            999999999999998888888888889999999999665555555554333 332 223567899999999999999876


Q ss_pred             c
Q 021484          264 R  264 (312)
Q Consensus       264 ~  264 (312)
                      .
T Consensus       358 K  358 (479)
T KOG0299|consen  358 K  358 (479)
T ss_pred             c
Confidence            5

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.8e-22  Score=160.85  Aligned_cols=209  Identities=11%  Similarity=0.125  Sum_probs=168.7

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      +++|.+++-+|.| .+|+.|+..|.|++|.+.+|.+.               ..+.+|-..|+++.|+.||.+|+++ .|
T Consensus        81 Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL---------------~v~~aHYQ~ITcL~fs~dgs~iiTgskD  144 (476)
T KOG0646|consen   81 PGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILL---------------NVLSAHYQSITCLKFSDDGSHIITGSKD  144 (476)
T ss_pred             ccceeeeecCCCc-eEEEeecccCcEEEEEeccccHH---------------HHHHhhccceeEEEEeCCCcEEEecCCC
Confidence            6789999999999 88888889999999999999742               2238899999999999999999997 59


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC--CCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      |.|.+|.+..-..+....       ..++...|..|.-+  |+++.. .+  ...+|++++.|.++++||+..+..+.++
T Consensus       145 g~V~vW~l~~lv~a~~~~-------~~~p~~~f~~Htls--ITDl~i-g~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti  214 (476)
T KOG0646|consen  145 GAVLVWLLTDLVSADNDH-------SVKPLHIFSDHTLS--ITDLQI-GSGGTNARLYTASEDRTIKLWDLSLGVLLLTI  214 (476)
T ss_pred             ccEEEEEEEeecccccCC-------CccceeeeccCcce--eEEEEe-cCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence            999999986542211111       22677888889865  998876 43  3568999999999999999999988877


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-----------------CCCCCCChh-hhhhhhccCCCCceeE
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----------------FPPLPDNAE-KIMKANKQGREDHSRI  248 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~~~l~  248 (312)
                      . ....+.+++.+|.++.+..|+.+|.|.+.++..-.                 ...+.+|.. ..+++...+.|+.+|+
T Consensus       215 ~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  215 T-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             e-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence            6 45689999999999999999999999887754321                 233445655 3457777889999999


Q ss_pred             EecCCceEEEEEecccC
Q 021484          249 TLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       249 s~~~d~~i~i~~~~~~~  265 (312)
                      +|+.||.+.+||+...+
T Consensus       294 SGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             eeCCCCCEEEEecchHH
Confidence            99999999999987653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=3.2e-22  Score=167.42  Aligned_cols=206  Identities=15%  Similarity=0.189  Sum_probs=160.6

Q ss_pred             CccceEEEEE-cCCCCcEEEEEeCCCeEEEEEccCCee--cCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           29 NSIRLNAIVI-DPRNPNYFAVGGSDEYARVYDIRKCHW--YSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        29 h~~~v~~~~~-~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      |.+.|.|+++ -++. .++|+|+-|+.|.+||+.++..  ....      .......+..++...|++++.++.|.++++
T Consensus       116 H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~------n~~t~~sl~sG~k~siYSLA~N~t~t~ivs  188 (735)
T KOG0308|consen  116 HKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASF------NNVTVNSLGSGPKDSIYSLAMNQTGTIIVS  188 (735)
T ss_pred             ccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhc------cccccccCCCCCccceeeeecCCcceEEEe
Confidence            8999999999 6666 8999999999999999998731  1110      011122232488999999999999999998


Q ss_pred             ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                      |+ .+.+++||.++.                +.+..++||...  |..+.. +++|..+++++.||+|++||+...+++.
T Consensus       189 Ggtek~lr~wDprt~----------------~kimkLrGHTdN--Vr~ll~-~dDGt~~ls~sSDgtIrlWdLgqQrCl~  249 (735)
T KOG0308|consen  189 GGTEKDLRLWDPRTC----------------KKIMKLRGHTDN--VRVLLV-NDDGTRLLSASSDGTIRLWDLGQQRCLA  249 (735)
T ss_pred             cCcccceEEeccccc----------------cceeeeeccccc--eEEEEE-cCCCCeEeecCCCceEEeeeccccceee
Confidence            75 999999999998                788889999977  999998 9999999999999999999999999999


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC-CCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      ++..|...|.++..+|+-.++.+|+.||.|..=|+++....+ +.....++........+. .+-..+.|+.|+-|..
T Consensus       250 T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~-~~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  250 TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDN-SVWVTTTDSSIKRWKL  326 (735)
T ss_pred             eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccC-CceeeeccccceecCC
Confidence            999999999999999999999999999999999998853222 222233332222111122 2245556666666653

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.90  E-value=4.1e-21  Score=144.78  Aligned_cols=196  Identities=16%  Similarity=0.182  Sum_probs=148.5

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||.+.|.|+..+-+. ..+++|+.|.++++||+.++++...              +  ....+|..+.|+++|.+++.+
T Consensus        49 ~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~--------------~--k~~~~Vk~~~F~~~gn~~l~~  111 (327)
T KOG0643|consen   49 DGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQLAT--------------W--KTNSPVKRVDFSFGGNLILAS  111 (327)
T ss_pred             cCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEEEE--------------e--ecCCeeEEEeeccCCcEEEEE
Confidence            6999999999999987 8999999999999999999984322              1  225678999999999866665


Q ss_pred             c------CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC
Q 021484          107 N------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG  180 (312)
Q Consensus       107 ~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~  180 (312)
                      .      .+.|.++|++....         +.....+...+..+...  ++.+-| .|.+++|++|.+||.|.+||.+++
T Consensus       112 tD~~mg~~~~v~~fdi~~~~~---------~~~s~ep~~kI~t~~sk--it~a~W-g~l~~~ii~Ghe~G~is~~da~~g  179 (327)
T KOG0643|consen  112 TDKQMGYTCFVSVFDIRDDSS---------DIDSEEPYLKIPTPDSK--ITSALW-GPLGETIIAGHEDGSISIYDARTG  179 (327)
T ss_pred             ehhhcCcceEEEEEEccCChh---------hhcccCceEEecCCccc--eeeeee-cccCCEEEEecCCCcEEEEEcccC
Confidence            3      34589999984311         11111445556656544  888888 999999999999999999999998


Q ss_pred             ee-EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484          181 KL-VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPD  253 (312)
Q Consensus       181 ~~-~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  253 (312)
                      +. +..-+.|...|++++++|+..+++|++.|.+-++||..+.++ +++. ...+ +..+...|-...++.++..
T Consensus       180 ~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~P-vN~aaisP~~d~VilgGGq  252 (327)
T KOG0643|consen  180 KELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERP-VNTAAISPLLDHVILGGGQ  252 (327)
T ss_pred             ceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccc-ccceecccccceEEecCCc
Confidence            54 555578999999999999999999999999999999988764 3332 2222 3444455544445544443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.6e-22  Score=156.03  Aligned_cols=215  Identities=13%  Similarity=0.188  Sum_probs=160.0

Q ss_pred             CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEcc------CCeecCCCC--------------------CCCCccccc
Q 021484           26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR------KCHWYSPIS--------------------SDTPVDTFC   79 (312)
Q Consensus        26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~------~~~~~~~~~--------------------~~~~~~~~~   79 (312)
                      |-||.+.|++++|++.+ .++++++.|++..||...      ...-.....                    .+.+... .
T Consensus       186 Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR-v  263 (481)
T KOG0300|consen  186 YTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR-V  263 (481)
T ss_pred             ecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee-e
Confidence            35799999999999998 899999999999999832      100000000                    0000000 1


Q ss_pred             ccccccCCCccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           80 PRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        80 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                      +...+.+|...|.+..|-..|+.+++++ |.+..+||++++                ..+..+.||...  ++.++- +|
T Consensus       264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg----------------e~v~~LtGHd~E--LtHcst-Hp  324 (481)
T KOG0300|consen  264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG----------------EVVNILTGHDSE--LTHCST-HP  324 (481)
T ss_pred             eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC----------------ceeccccCcchh--cccccc-CC
Confidence            2223378999999999999999899876 999999999998                899999999977  888887 89


Q ss_pred             CCCEEEEeccCceEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhh
Q 021484          159 NDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIM  235 (312)
Q Consensus       159 ~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~  235 (312)
                      ..+++++.+.|.+.++||++.. +.+..|++|...|+++.|..+ ..+++|+.|.+|++||++...  +.++.  .....
T Consensus       325 tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~  401 (481)
T KOG0300|consen  325 TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPA  401 (481)
T ss_pred             cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee--cCCcc
Confidence            9999999999999999999853 457788999999999999866 457799999999999998765  23332  22222


Q ss_pred             hhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          236 KANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      .....+.....++.--.+..+++||++..
T Consensus       402 NRvavs~g~~iIAiPhDNRqvRlfDlnG~  430 (481)
T KOG0300|consen  402 NRVAVSKGHPIIAIPHDNRQVRLFDLNGN  430 (481)
T ss_pred             ceeEeecCCceEEeccCCceEEEEecCCC
Confidence            23333443444444445578999998654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=3.6e-22  Score=168.21  Aligned_cols=227  Identities=16%  Similarity=0.257  Sum_probs=181.7

Q ss_pred             CccceEE-EEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021484           29 NSIRLNA-IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN  107 (312)
Q Consensus        29 h~~~v~~-~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  107 (312)
                      |.+-|.. +++-+...-.+++|+.|++|.+|.+....               +...+.+|...|.++....++. +++++
T Consensus        56 ~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~---------------P~~~LkgH~snVC~ls~~~~~~-~iSgS  119 (745)
T KOG0301|consen   56 PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE---------------PLYTLKGHKSNVCSLSIGEDGT-LISGS  119 (745)
T ss_pred             CcceeeccceeccccCcceEeecccceEEEEecCCCC---------------chhhhhccccceeeeecCCcCc-eEecc
Confidence            3444554 77776332479999999999999998764               4444599999999998877777 67765


Q ss_pred             -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                       |.++++|...                  ++...+.+|...  |..++. -|++ .+++|+.|.+|++|.-  ++.++++
T Consensus       120 WD~TakvW~~~------------------~l~~~l~gH~as--VWAv~~-l~e~-~~vTgsaDKtIklWk~--~~~l~tf  175 (745)
T KOG0301|consen  120 WDSTAKVWRIG------------------ELVYSLQGHTAS--VWAVAS-LPEN-TYVTGSADKTIKLWKG--GTLLKTF  175 (745)
T ss_pred             cccceEEecch------------------hhhcccCCcchh--eeeeee-cCCC-cEEeccCcceeeeccC--Cchhhhh
Confidence             9999999876                  466678999977  999987 4555 8899999999999975  7889999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc---
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR---  263 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~---  263 (312)
                      .+|+..|..+++-|++ .|++++.||.|++|++.+..+..+.+|.+-++... ...++..+++.+.|++++||+...   
T Consensus       176 ~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis-~~~~~~~Ivs~gEDrtlriW~~~e~~q  253 (745)
T KOG0301|consen  176 SGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSIS-MALSDGLIVSTGEDRTLRIWKKDECVQ  253 (745)
T ss_pred             ccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEE-ecCCCCeEEEecCCceEEEeecCceEE
Confidence            9999999999998874 57799999999999998888899999999886655 456788999999999999998542   


Q ss_pred             ----cCccceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          264 ----RQTLAYRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       264 ----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                          +...+|....-...++..+..+|+|+++-.+..-
T Consensus       254 ~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R  291 (745)
T KOG0301|consen  254 VITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDR  291 (745)
T ss_pred             EEecCccceEEEEEeeCCCEEEeccCceEEEEEecccc
Confidence                2233444334456788888999999999876443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.89  E-value=2e-23  Score=165.82  Aligned_cols=235  Identities=14%  Similarity=0.212  Sum_probs=188.9

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~  106 (312)
                      .|.+.+..+.|-++. ..|++|+.|..|++|+....+.             .....+.+..++|+.+.|.++++.+++ +
T Consensus       173 ~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~k~-------------~~~~tLaGs~g~it~~d~d~~~~~~iAas  238 (459)
T KOG0288|consen  173 AHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGEKS-------------ELISTLAGSLGNITSIDFDSDNKHVIAAS  238 (459)
T ss_pred             ccccccceeEEccCc-chhhhcchhhhhhhhhcccchh-------------hhhhhhhccCCCcceeeecCCCceEEeec
Confidence            588999999999986 6999999999999999986652             122233666788999999999985555 5


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .|+.+++|++...                +...++.+|...  |+++.| ......+++|+.|.+|+.||+....+.+++
T Consensus       239 ~d~~~r~Wnvd~~----------------r~~~TLsGHtdk--Vt~ak~-~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~  299 (459)
T KOG0288|consen  239 NDKNLRLWNVDSL----------------RLRHTLSGHTDK--VTAAKF-KLSHSRVVSGSADRTIKLWDLQKAYCSKTV  299 (459)
T ss_pred             CCCceeeeeccch----------------hhhhhhcccccc--eeeehh-hccccceeeccccchhhhhhhhhhheeccc
Confidence            7999999999988                788999999977  999999 666666999999999999999988887766


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      . ....+.++..+  ...++++..|++||+||.++... ..++.+.  .+.....+.++..+++.+.|.++.+.|++..+
T Consensus       300 l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e  374 (459)
T KOG0288|consen  300 L-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE  374 (459)
T ss_pred             c-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeeccccc
Confidence            4 23456667665  56688999999999999998875 3443232  34555677888899999999999999987643


Q ss_pred             cc--------------ceeEeecCCCccCCCCCCCeEEEeecCCCCCCC
Q 021484          266 TL--------------AYRERRYNAADFESDEEEGETYLLGFSDSDASS  300 (312)
Q Consensus       266 ~~--------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  300 (312)
                      ..              ....++|+..+++.+..+|+||+|+...+..+.
T Consensus       375 I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~  423 (459)
T KOG0288|consen  375 IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK  423 (459)
T ss_pred             EEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence            22              223789999999999999999999988776443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=8e-23  Score=166.41  Aligned_cols=222  Identities=11%  Similarity=0.109  Sum_probs=176.3

Q ss_pred             CeeecccCccc-eeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021484            1 MWQFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   79 (312)
Q Consensus         1 v~~wd~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~   79 (312)
                      |+|||+..+.. .++-.+....       ....|.++...|++ +.|++|+.-.++.|||+..-...             
T Consensus       442 VKVWdis~pg~k~PvsqLdcl~-------rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTpr-------------  500 (705)
T KOG0639|consen  442 VKVWDISQPGNKSPVSQLDCLN-------RDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTPR-------------  500 (705)
T ss_pred             EEEeeccCCCCCCccccccccC-------cccceeeeEecCCC-ceEEeccccceeeeeeccCCCcc-------------
Confidence            68999975432 2232222221       24569999999999 89999999999999999865421             


Q ss_pred             ccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           80 PRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        80 ~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                      .+.-+........+++.+||.++.+++ +||.|.|||+.+.                ..++.|++|.+.  +.|+.. ++
T Consensus       501 ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----------------~~VrqfqGhtDG--ascIdi-s~  561 (705)
T KOG0639|consen  501 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----------------TLVRQFQGHTDG--ASCIDI-SK  561 (705)
T ss_pred             hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----------------eeeecccCCCCC--ceeEEe-cC
Confidence            111113334567889999999977775 8999999999987                789999999988  999998 99


Q ss_pred             CCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhh
Q 021484          159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKAN  238 (312)
Q Consensus       159 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  238 (312)
                      +|..|.+|+-|.+|+.||+++++.+.... ....|.++-.+|++.+++.|-+++.+-|-.....+...+..|..-++. .
T Consensus       562 dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLS-l  639 (705)
T KOG0639|consen  562 DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLS-L  639 (705)
T ss_pred             CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEE-E
Confidence            99999999999999999999987665433 457899999999999999999999999998887777777666666644 4


Q ss_pred             ccCCCCceeEEecCCceEEEEEeccc
Q 021484          239 KQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       239 ~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      .+..-+.++++.+.|..+..|+..-+
T Consensus       640 KFa~cGkwfvStGkDnlLnawrtPyG  665 (705)
T KOG0639|consen  640 KFAYCGKWFVSTGKDNLLNAWRTPYG  665 (705)
T ss_pred             EecccCceeeecCchhhhhhccCccc
Confidence            57778999999999999999986554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=4.4e-22  Score=153.20  Aligned_cols=195  Identities=14%  Similarity=0.220  Sum_probs=146.2

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCC-CcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   79 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~   79 (312)
                      |+|||+++.+....+..           |.+.|+++.|.+.- ..-|++|+.||.|.+|+.....              +
T Consensus        65 I~IYDm~k~~qlg~ll~-----------HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~--------------~  119 (362)
T KOG0294|consen   65 IHIYDMRKRKQLGILLS-----------HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE--------------L  119 (362)
T ss_pred             EEEEeccchhhhcceec-----------cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE--------------E
Confidence            57888887776666554           78899999998854 1379999999999999999876              3


Q ss_pred             ccccccCCCccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCcCCCCCcCCc------ccccC-------CCCCceE----
Q 021484           80 PRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSP------EDLQK-------REEPQVY----  141 (312)
Q Consensus        80 ~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~-------~~~~~~~----  141 (312)
                      ...+ .+|...|+.++.+|.+++..+ +.|+.++.||+-.++......+..      |..+.       ...+-.+    
T Consensus       120 ~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~  198 (362)
T KOG0294|consen  120 LKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDN  198 (362)
T ss_pred             eeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEeccc
Confidence            3333 899999999999999997776 689999999998776332222111      11000       0001111    


Q ss_pred             ----ecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEE--cCCCCeEEEEeCCCcEE
Q 021484          142 ----SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP--HPHIPMFATCGIEKTVK  215 (312)
Q Consensus       142 ----~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~t~~~d~~i~  215 (312)
                          ..-..+..+.++.|  .++..|++|.+++.|.+||.++..+...+.+|..+|.++.+  .|.+.+|+|+|.||.|+
T Consensus       199 A~v~~~i~~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~  276 (362)
T KOG0294|consen  199 ASVFREIENPKRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIK  276 (362)
T ss_pred             HhHhhhhhccccceeeee--cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEE
Confidence                11111122666766  57889999999999999999999999999999999999984  56788899999999999


Q ss_pred             EccCCCCC
Q 021484          216 LWAPMPTD  223 (312)
Q Consensus       216 iwd~~~~~  223 (312)
                      |||++...
T Consensus       277 vWd~~~~~  284 (362)
T KOG0294|consen  277 VWDIDMET  284 (362)
T ss_pred             EEEccccc
Confidence            99998763

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=3.6e-21  Score=144.59  Aligned_cols=235  Identities=10%  Similarity=0.128  Sum_probs=183.3

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  105 (312)
                      .+|...|.+++|+.+| ..|++|+.|+++++|++...+.             .......+|.+.|-.++|+|... .+++
T Consensus        17 ~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~-------------~~~~~~~gh~~svdql~w~~~~~d~~at   82 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRF-------------RKELVYRGHTDSVDQLCWDPKHPDLFAT   82 (313)
T ss_pred             hhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhh-------------hhhhcccCCCcchhhheeCCCCCcceEE
Confidence            4688999999999999 8999999999999999986652             22223378899999999999764 6666


Q ss_pred             e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                      + +|.+|++||++.+                ++..........  + -+.| +|+|+++++++.|..|.+.|.++.+.+.
T Consensus        83 as~dk~ir~wd~r~~----------------k~~~~i~~~~en--i-~i~w-sp~g~~~~~~~kdD~it~id~r~~~~~~  142 (313)
T KOG1407|consen   83 ASGDKTIRIWDIRSG----------------KCTARIETKGEN--I-NITW-SPDGEYIAVGNKDDRITFIDARTYKIVN  142 (313)
T ss_pred             ecCCceEEEEEeccC----------------cEEEEeeccCcc--e-EEEE-cCCCCEEEEecCcccEEEEEecccceee
Confidence            5 6999999999988                677766655433  3 4567 8999999999999999999999888776


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      ..+ ...-+..++|+-++.+++.....|+|.|......+ +.++..|....+ +..+.++++++++|+.|..+.+||+..
T Consensus       143 ~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCi-cI~f~p~GryfA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  143 EEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCI-CIEFDPDGRYFATGSADALVSLWDVDE  220 (313)
T ss_pred             hhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceE-EEEECCCCceEeeccccceeeccChhH
Confidence            655 33467789999888886666668999999877665 467777776553 445789999999999999999999765


Q ss_pred             cC---------ccce-eEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          264 RQ---------TLAY-RERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       264 ~~---------~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      --         -++. ..++.++.++++..++-.|-+..+..|+
T Consensus       221 LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd  264 (313)
T KOG1407|consen  221 LICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD  264 (313)
T ss_pred             hhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCC
Confidence            21         1122 2788899999998888555555555554

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=5.4e-21  Score=154.04  Aligned_cols=199  Identities=13%  Similarity=0.188  Sum_probs=158.1

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~  106 (312)
                      +|...+.+++.+|++ ++|++|+.|..|.||+.++.+.         +      ..+.+|.+.|.+++|-.....|.+ +
T Consensus       200 ~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~eh---------v------~~~~ghr~~V~~L~fr~gt~~lys~s  263 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLEH---------V------KVFKGHRGAVSSLAFRKGTSELYSAS  263 (479)
T ss_pred             cccceeEEEEEcCCC-cEEEecCCCceEEEecCcccch---------h------hcccccccceeeeeeecCccceeeee
Confidence            699999999999999 8999999999999999999862         2      223899999999999887765555 5


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .|+.+++|++...                ..+.++.+|...  |.++.- ..-++.+.+|+.|+++++|++. -+....+
T Consensus       264 ~Drsvkvw~~~~~----------------s~vetlyGHqd~--v~~Ida-L~reR~vtVGgrDrT~rlwKi~-eesqlif  323 (479)
T KOG0299|consen  264 ADRSVKVWSIDQL----------------SYVETLYGHQDG--VLGIDA-LSRERCVTVGGRDRTVRLWKIP-EESQLIF  323 (479)
T ss_pred             cCCceEEEehhHh----------------HHHHHHhCCccc--eeeech-hcccceEEeccccceeEEEecc-ccceeee
Confidence            6999999999876                677888999977  999987 5567777777899999999994 3444567


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC-CCC-CCh--------h---hhhhhhccCCCCceeEEecCC
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLP-DNA--------E---KIMKANKQGREDHSRITLTPD  253 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~-~~~--------~---~~~~~~~~~~~~~~l~s~~~d  253 (312)
                      .+|.+.+-+++|-.+ ..|++|+.+|.|.+|++...++. +.. .|.        +   ++ ......+...++++++.+
T Consensus       324 rg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wi-tsla~i~~sdL~asGS~~  401 (479)
T KOG0299|consen  324 RGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWI-TSLAVIPGSDLLASGSWS  401 (479)
T ss_pred             eCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccce-eeeEecccCceEEecCCC
Confidence            788889999998654 67889999999999998876531 111 010        0   12 223345578899999999


Q ss_pred             ceEEEEEeccc
Q 021484          254 VIMHVLRLQRR  264 (312)
Q Consensus       254 ~~i~i~~~~~~  264 (312)
                      |.+++|-+..+
T Consensus       402 G~vrLW~i~~g  412 (479)
T KOG0299|consen  402 GCVRLWKIEDG  412 (479)
T ss_pred             CceEEEEecCC
Confidence            99999988765

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.87  E-value=8.5e-21  Score=150.30  Aligned_cols=210  Identities=15%  Similarity=0.150  Sum_probs=160.5

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  105 (312)
                      -||+++|..++|+|.+.+.||+|+.|.+|.||.+....+.....        .+...+.+|...|..++|+|... .|++
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt--------epvv~L~gH~rrVg~V~wHPtA~NVLls  149 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT--------EPVVELYGHQRRVGLVQWHPTAPNVLLS  149 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc--------cceEEEeecceeEEEEeecccchhhHhh
Confidence            38999999999999888999999999999999998765432211        22333489999999999999875 6666


Q ss_pred             -ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          106 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       106 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                       +.|.+|.+||+.++                +.+..+. |...  |.+++| +.+|.+|++.+.|..|+|||.++++.+.
T Consensus       150 ag~Dn~v~iWnv~tg----------------eali~l~-hpd~--i~S~sf-n~dGs~l~TtckDKkvRv~dpr~~~~v~  209 (472)
T KOG0303|consen  150 AGSDNTVSIWNVGTG----------------EALITLD-HPDM--VYSMSF-NRDGSLLCTTCKDKKVRVIDPRRGTVVS  209 (472)
T ss_pred             ccCCceEEEEeccCC----------------ceeeecC-CCCe--EEEEEe-ccCCceeeeecccceeEEEcCCCCcEee
Confidence             57999999999998                5666665 7755  999999 9999999999999999999999999999


Q ss_pred             EeecCcc-ceEEEEEcCCCCeEEEEe---CCCcEEEccCCCCC-CCCCC--CChhhhhhhhccCCCCce-eEEecCCceE
Q 021484          185 LMVGDRH-VVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTD-FPPLP--DNAEKIMKANKQGREDHS-RITLTPDVIM  256 (312)
Q Consensus       185 ~~~~~~~-~v~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~-l~s~~~d~~i  256 (312)
                      .-.+|.+ ....+.|-.++..+.||-   .+..+-+||....+ ...+.  ...+.++- -.+.++..+ .+.|-.|+.|
T Consensus       210 e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~-PFyD~dt~ivYl~GKGD~~I  288 (472)
T KOG0303|consen  210 EGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLL-PFYDPDTSIVYLCGKGDSSI  288 (472)
T ss_pred             ecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEE-eeecCCCCEEEEEecCCcce
Confidence            8888874 455677888988555553   57899999987654 22111  23333422 224455444 4566678999


Q ss_pred             EEEEecccC
Q 021484          257 HVLRLQRRQ  265 (312)
Q Consensus       257 ~i~~~~~~~  265 (312)
                      |-+.+....
T Consensus       289 RYyEit~d~  297 (472)
T KOG0303|consen  289 RYFEITNEP  297 (472)
T ss_pred             EEEEecCCC
Confidence            999987653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=7.5e-20  Score=158.88  Aligned_cols=232  Identities=13%  Similarity=0.172  Sum_probs=185.0

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      .|..+.+.++|.|+| +.|++++.||.|++|+.....-             .+..+ ..+...|.+++....  +|+++ 
T Consensus        11 aht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e-------------~P~ti-~~~g~~v~~ia~~s~--~f~~~s   73 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEE-------------EPETI-DISGELVSSIACYSN--HFLTGS   73 (933)
T ss_pred             hccCceEEEEEcCCC-CEEEEecCCCceEEeecCCccc-------------CCchh-hccCceeEEEeeccc--ceEEee
Confidence            388899999999999 7999999999999999876520             22222 336777888776443  55554 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .+++|.+|.+.++                ..-..+....-+  +++++| +.+|++++.|+.|-.|++.++.+......+
T Consensus        74 ~~~tv~~y~fps~----------------~~~~iL~Rftlp--~r~~~v-~g~g~~iaagsdD~~vK~~~~~D~s~~~~l  134 (933)
T KOG1274|consen   74 EQNTVLRYKFPSG----------------EEDTILARFTLP--IRDLAV-SGSGKMIAAGSDDTAVKLLNLDDSSQEKVL  134 (933)
T ss_pred             ccceEEEeeCCCC----------------Cccceeeeeecc--ceEEEE-ecCCcEEEeecCceeEEEEeccccchheee
Confidence            6999999999876                333333333433  889999 899999999999999999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCC-------ChhhhhhhhccCCCCceeEEecCCceEEE
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-------NAEKIMKANKQGREDHSRITLTPDVIMHV  258 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  258 (312)
                      ++|.++|.++.|+|.+.+||+.+-||.|++|+++.+.+ .++.+       ....++....|++++..++..+.|+.|++
T Consensus       135 rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv  214 (933)
T KOG1274|consen  135 RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV  214 (933)
T ss_pred             cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence            99999999999999999999999999999999998764 33321       12455666778999888899999999999


Q ss_pred             EEeccc------------CccceeEeecCCCccCCCCCCCeEEEeecCC
Q 021484          259 LRLQRR------------QTLAYRERRYNAADFESDEEEGETYLLGFSD  295 (312)
Q Consensus       259 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  295 (312)
                      ++...-            .......++|.+.+++...-++.|.+||.+.
T Consensus       215 y~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  215 YSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            874321            1233448999999999999999999999875

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=7e-21  Score=149.92  Aligned_cols=222  Identities=18%  Similarity=0.199  Sum_probs=159.8

Q ss_pred             CCCccceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCC-eecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eE
Q 021484           27 PMNSIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LL  103 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l  103 (312)
                      .+|.+.++.+.-++.+. .+.++=+..|.|+||++... +.........+...+.+.....+|...=+.|.|||--. .|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            35788888888877642 35555688999999998632 11111111111122233333478888899999999443 56


Q ss_pred             EEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccCCe
Q 021484          104 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       104 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~~~  181 (312)
                      ++|. -+.|++|...++.         |.+.    ...|.+|...  |-.++| +|. ...|++|+.||.|+|||++.+.
T Consensus       228 lsGDc~~~I~lw~~~~g~---------W~vd----~~Pf~gH~~S--VEDLqW-SptE~~vfaScS~DgsIrIWDiRs~~  291 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGS---------WKVD----QRPFTGHTKS--VEDLQW-SPTEDGVFASCSCDGSIRIWDIRSGP  291 (440)
T ss_pred             ccCccccceEeeeeccCc---------eeec----Cccccccccc--hhhhcc-CCccCceEEeeecCceEEEEEecCCC
Confidence            7774 8899999987752         2111    2345678866  999999 665 5678999999999999999872


Q ss_pred             --eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC----CCCCCChhhhhhhhccCCCCceeEEecCCce
Q 021484          182 --LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF----PPLPDNAEKIMKANKQGREDHSRITLTPDVI  255 (312)
Q Consensus       182 --~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  255 (312)
                        .....++|.+.|+.+.|+....+||+|+.||+++|||++..+.    ..+.-|..++....|...+...+++++.|.+
T Consensus       292 ~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q  371 (440)
T KOG0302|consen  292 KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ  371 (440)
T ss_pred             ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc
Confidence              2223388999999999999989999999999999999987654    3566566666554443347888899999999


Q ss_pred             EEEEEeccc
Q 021484          256 MHVLRLQRR  264 (312)
Q Consensus       256 i~i~~~~~~  264 (312)
                      +.+||+.-.
T Consensus       372 itiWDlsvE  380 (440)
T KOG0302|consen  372 ITIWDLSVE  380 (440)
T ss_pred             EEEEEeecc
Confidence            999998643

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=7.8e-21  Score=153.06  Aligned_cols=204  Identities=14%  Similarity=0.181  Sum_probs=155.3

Q ss_pred             CccceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eEEE
Q 021484           29 NSIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS  105 (312)
Q Consensus        29 h~~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s  105 (312)
                      |..+|++++|+|... .++|+|..-|.|-+||+.+.+..        .   ....+...|..+|.+|.|+|...  ++.+
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d--------~---d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss  253 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD--------K---DGVYLFTPHSGPVSGLKFSPANTSQIYSS  253 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc--------c---CceEEeccCCccccceEecCCChhheeee
Confidence            678999999999876 68999999999999999743311        0   12223378999999999999774  5555


Q ss_pred             ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee-EE
Q 021484          106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VR  184 (312)
Q Consensus       106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-~~  184 (312)
                      +.||+|++-|+++.                ..-..+........+.++.| +.+...++.+..=|.+.+||++++.. ..
T Consensus       254 SyDGtiR~~D~~~~----------------i~e~v~s~~~d~~~fs~~d~-~~e~~~vl~~~~~G~f~~iD~R~~~s~~~  316 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGN----------------ISEEVLSLDTDNIWFSSLDF-SAESRSVLFGDNVGNFNVIDLRTDGSEYE  316 (498)
T ss_pred             ccCceeeeeeecch----------------hhHHHhhcCccceeeeeccc-cCCCccEEEeecccceEEEEeecCCccch
Confidence            67999999999876                22222222222234777887 66777777777777999999998665 56


Q ss_pred             EeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC-----CCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021484          185 LMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  258 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  258 (312)
                      .+..|...|.+|+++|..++ |||+|.|++.+|||++.-..     .....|...+ ..+.+++.+..|++.+.|..|+|
T Consensus       317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV-~sAyFSPs~gtl~TT~~D~~IRv  395 (498)
T KOG4328|consen  317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV-NSAYFSPSGGTLLTTCQDNEIRV  395 (498)
T ss_pred             hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccccee-eeeEEcCCCCceEeeccCCceEE
Confidence            66778889999999999877 99999999999999886432     1222355544 77778887777999999999999


Q ss_pred             EEe
Q 021484          259 LRL  261 (312)
Q Consensus       259 ~~~  261 (312)
                      ||.
T Consensus       396 ~ds  398 (498)
T KOG4328|consen  396 FDS  398 (498)
T ss_pred             eec
Confidence            997

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=1.4e-20  Score=144.16  Aligned_cols=204  Identities=13%  Similarity=0.170  Sum_probs=144.4

Q ss_pred             CeeecccCc-cceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021484            1 MWQFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   79 (312)
Q Consensus         1 v~~wd~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~   79 (312)
                      ||+|+++.. ...+    +...      .|.++|.+++|+.+| ..+++|+.|+.+++||+.+++..             
T Consensus        52 VR~wevq~~g~~~~----ka~~------~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~Q~~-------------  107 (347)
T KOG0647|consen   52 VRIWEVQNSGQLVP----KAQQ------SHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASGQVS-------------  107 (347)
T ss_pred             eEEEEEecCCcccc----hhhh------ccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCCCee-------------
Confidence            678888753 2222    1111      278999999999999 89999999999999999999732             


Q ss_pred             ccccccCCCccEEEEEEccCCC--eEEEec-CCcEEEEEcCCCcCCCCCcCCccc-----------------------cc
Q 021484           80 PRHLIGKNNIHITGLAYSNTSE--LLISYN-DELVYLFEKNMGLGPSPLSLSPED-----------------------LQ  133 (312)
Q Consensus        80 ~~~~~~~~~~~i~~~~~~~~~~--~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~-----------------------~~  133 (312)
                        .+ ..|..+|..+.|-+...  .|++++ |++|+.||.+....-....++..-                       +.
T Consensus       108 --~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~  184 (347)
T KOG0647|consen  108 --QV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE  184 (347)
T ss_pred             --ee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence              22 78999999999988775  888987 999999999875421111221111                       11


Q ss_pred             CCCCCceEecccCC--ceeeEEEEecCCCCEEEEeccCceEEEEeccCC--eeEEEeecCcc---------ceEEEEEcC
Q 021484          134 KREEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KLVRLMVGDRH---------VVNQLEPHP  200 (312)
Q Consensus       134 ~~~~~~~~~~~~~~--~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~---------~v~~~~~~p  200 (312)
                      .  ....++.+..+  -.+++|+. -.+.+-.+.|+-+|++.|..+..+  +.-..++.|..         .|++++|+|
T Consensus       185 n--~~te~k~~~SpLk~Q~R~va~-f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP  261 (347)
T KOG0647|consen  185 N--PPTEFKRIESPLKWQTRCVAC-FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP  261 (347)
T ss_pred             C--CcchhhhhcCcccceeeEEEE-EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence            1  01111111111  12788888 567776799999999999998876  44456666652         578899999


Q ss_pred             CCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhh
Q 021484          201 HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI  234 (312)
Q Consensus       201 ~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~  234 (312)
                      ....|+|++.||++.+||-.... +.+.+.+..++
T Consensus       262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpI  296 (347)
T KOG0647|consen  262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPI  296 (347)
T ss_pred             ccceEEEecCCceEEEecchhhhhhhccCcCCCcc
Confidence            99999999999999999977653 55555555555

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=3.5e-20  Score=141.74  Aligned_cols=257  Identities=18%  Similarity=0.246  Sum_probs=170.8

Q ss_pred             CeeecccCcc--ceeeEEecccccCCcC--CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcc
Q 021484            1 MWQFDLRSDS--ATRLFYCSSFSENSKQ--PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD   76 (312)
Q Consensus         1 v~~wd~~~~~--~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~   76 (312)
                      |-|||++...  ...-+.++......++  -+|+-.|.++.|-|-..-+|.+++.|.++++||..+.+..         .
T Consensus        68 i~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a---------~  138 (397)
T KOG4283|consen   68 IAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA---------V  138 (397)
T ss_pred             EEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceee---------E
Confidence            4588886433  2222222222212222  3689999999999955469999999999999999988732         1


Q ss_pred             cccccccccCCCccEEEEEEccCC---CeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeE
Q 021484           77 TFCPRHLIGKNNIHITGLAYSNTS---ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  152 (312)
Q Consensus        77 ~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  152 (312)
                      .|       .-.+.|.+-+++|-.   .++|++ .+-+|++.|+.++                .....+.||...  |.+
T Consensus       139 ~F-------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----------------s~sH~LsGHr~~--vla  193 (397)
T KOG4283|consen  139 DF-------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----------------SFSHTLSGHRDG--VLA  193 (397)
T ss_pred             Ee-------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----------------cceeeeccccCc--eEE
Confidence            11       125667777888844   266666 5889999999998                788999999987  999


Q ss_pred             EEEecCCCCE-EEEeccCceEEEEeccCC-eeEEE--------------eecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484          153 VNFFGPNDEY-VMSGSDCGHLFIWKKKGG-KLVRL--------------MVGDRHVVNQLEPHPHIPMFATCGIEKTVKL  216 (312)
Q Consensus       153 v~~~s~~~~~-l~~~~~dg~v~iwd~~~~-~~~~~--------------~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~i  216 (312)
                      +.| +|...+ |++|+.||.|++||++.. -+...              -..|.+.|..++|..++.++++++.|..+++
T Consensus       194 V~W-sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~  272 (397)
T KOG4283|consen  194 VEW-SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV  272 (397)
T ss_pred             EEe-ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence            999 787665 689999999999998743 22222              2357788999999999999999999999999


Q ss_pred             ccCCCCCC--CCCCC--C-hhhhhhhhccCC-----------CCceeEEecCCceEEEEEecccCccceeEeecCCCccC
Q 021484          217 WAPMPTDF--PPLPD--N-AEKIMKANKQGR-----------EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFE  280 (312)
Q Consensus       217 wd~~~~~~--~~~~~--~-~~~~~~~~~~~~-----------~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~  280 (312)
                      |+...++-  ..+..  + ...-+.....+.           ++-.+++......|++|+.. ........+.++.+...
T Consensus       273 wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h-~k~i~c~~~~~~fq~~~  351 (397)
T KOG4283|consen  273 WNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH-LKRINCAAYRPDFEQCF  351 (397)
T ss_pred             eecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc-cceeeEEeecCchhhhh
Confidence            99887642  21110  0 000001100111           22344455555666666654 22222225566666666


Q ss_pred             CCCCCCeEEEeec
Q 021484          281 SDEEEGETYLLGF  293 (312)
Q Consensus       281 ~~~~~~~v~~~~~  293 (312)
                      +++-++.+|.+-.
T Consensus       352 tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  352 TGDMNGNIYMWSP  364 (397)
T ss_pred             ccccCCccccccc
Confidence            6766666766643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.87  E-value=8.6e-21  Score=159.98  Aligned_cols=191  Identities=16%  Similarity=0.236  Sum_probs=152.6

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||...|.+++...++  .+++||.|.++++|......                .. +.+|+..|++++.-|++.++..+
T Consensus        98 kgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~----------------~~-l~gH~asVWAv~~l~e~~~vTgs  158 (745)
T KOG0301|consen   98 KGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELV----------------YS-LQGHTASVWAVASLPENTYVTGS  158 (745)
T ss_pred             hccccceeeeecCCcC--ceEecccccceEEecchhhh----------------cc-cCCcchheeeeeecCCCcEEecc
Confidence            5899999999988776  39999999999999876432                22 38999999999999998655556


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .|.+|++|.-.                  +.+++|.+|.+-  |+.+++ - ++.-+++++.||.|+.|++ +++++..+
T Consensus       159 aDKtIklWk~~------------------~~l~tf~gHtD~--VRgL~v-l-~~~~flScsNDg~Ir~w~~-~ge~l~~~  215 (745)
T KOG0301|consen  159 ADKTIKLWKGG------------------TLLKTFSGHTDC--VRGLAV-L-DDSHFLSCSNDGSIRLWDL-DGEVLLEM  215 (745)
T ss_pred             CcceeeeccCC------------------chhhhhccchhh--eeeeEE-e-cCCCeEeecCCceEEEEec-cCceeeee
Confidence            79999999863                  688999999966  999998 3 4445789999999999999 69999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      .+|+.-|++++..+++..++++++|++++||+.. .....+.-....+....  ...+.-++++++||.+|||...
T Consensus       216 ~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~--~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  216 HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAK--VLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEEE--EeeCCCEEEeccCceEEEEEec
Confidence            9999999999988888999999999999999977 22222221111222111  1134568899999999999865

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=4.2e-20  Score=155.47  Aligned_cols=202  Identities=12%  Similarity=0.154  Sum_probs=155.9

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  109 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  109 (312)
                      +.+|.++||+.+. +.||.+-.||.|.+|++...=             ++...+..+....|.+++|++.++++.++.+|
T Consensus        25 Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w-------------~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg   90 (691)
T KOG2048|consen   25 PSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNW-------------FLEPVIHGPEDRSIESLAWAEGGRLFSSGLSG   90 (691)
T ss_pred             ccceEEEEEeccC-CceeeeccCCcEEEEccCCCc-------------eeeEEEecCCCCceeeEEEccCCeEEeecCCc
Confidence            7789999999988 789999999999999998642             23334434556789999999777777777899


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE--Eee
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--LMV  187 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~  187 (312)
                      .|.-||+.+.                +....+....+.  |.+++. +|.+..++.|++||.++.++..+++...  .+.
T Consensus        91 ~i~EwDl~~l----------------k~~~~~d~~gg~--IWsiai-~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~  151 (691)
T KOG2048|consen   91 SITEWDLHTL----------------KQKYNIDSNGGA--IWSIAI-NPENTILAIGCDDGVLYDFSIGPDKITYKRSLM  151 (691)
T ss_pred             eEEEEecccC----------------ceeEEecCCCcc--eeEEEe-CCccceEEeecCCceEEEEecCCceEEEEeecc
Confidence            9999999887                666666655544  999998 9999999999999988888887776543  344


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC-----CCCChhhhhhhhccC---CCCceeEEecCCceEEEE
Q 021484          188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-----LPDNAEKIMKANKQG---REDHSRITLTPDVIMHVL  259 (312)
Q Consensus       188 ~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~l~s~~~d~~i~i~  259 (312)
                      ..+++|.+++|+|++..+++|+.||.|++||..++.-..     +....+.--.+. |+   .....+++|...|.+++|
T Consensus       152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iV-WSv~~Lrd~tI~sgDS~G~V~FW  230 (691)
T KOG2048|consen  152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIV-WSVLFLRDSTIASGDSAGTVTFW  230 (691)
T ss_pred             cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEE-EEEEEeecCcEEEecCCceEEEE
Confidence            456899999999999999999999999999998775211     111111011111 22   145689999999999999


Q ss_pred             EecccC
Q 021484          260 RLQRRQ  265 (312)
Q Consensus       260 ~~~~~~  265 (312)
                      |.....
T Consensus       231 d~~~gT  236 (691)
T KOG2048|consen  231 DSIFGT  236 (691)
T ss_pred             cccCcc
Confidence            976553

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.2e-21  Score=159.03  Aligned_cols=244  Identities=50%  Similarity=0.907  Sum_probs=192.2

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+-+|++...+...+.+...+...     .-..++++.+|.+.+.+++|+.|..+++||.+.-+..   ....++..||+
T Consensus       257 v~~~Dlr~~~pa~~~~cr~~~~~~-----~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e---~~n~~~~~f~p  328 (559)
T KOG1334|consen  257 VFHIDLRQDVPAEKFVCREADEKE-----RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE---ENNGVLDKFCP  328 (559)
T ss_pred             eeeeeeccCCccceeeeeccCCcc-----ceeeeeEecCCCCccccccCChhhhhhhhcccchhhc---cccchhhhcCC
Confidence            345788888888888777665321     2368899999998889999999999999999865422   12236788899


Q ss_pred             cccccCCCccEEEEEEccCC-CeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTS-ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~-~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      .++.......|++++|+.++ .+|++.+|-.|+++.-..+.++.+....+.   .....+.++||.+..+|..+.|+-|.
T Consensus       329 ~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~---~~~~k~vYKGHrN~~TVKgVNFfGPr  405 (559)
T KOG1334|consen  329 HHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPR---EQYVKRVYKGHRNSRTVKGVNFFGPR  405 (559)
T ss_pred             ccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcch---hhccchhhcccccccccceeeeccCc
Confidence            99888778889999999776 588888999999997665544333222211   11233458999998889999999999


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhc
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANK  239 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  239 (312)
                      ..|+++|+.-|.|+||+-.+++.++.+.+...-|+|+.-||--+.||+++-|.-|+||.+.+.+....+...+.++..+.
T Consensus       406 sEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~~lk~vi~rN~  485 (559)
T KOG1334|consen  406 SEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEPTLLKQVIKRNK  485 (559)
T ss_pred             cceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccccChhhHHHHHhhhc
Confidence            99999999999999999999999998888777999999999999999999999999999977776666667788888887


Q ss_pred             cCC-CCceeEEecCCce
Q 021484          240 QGR-EDHSRITLTPDVI  255 (312)
Q Consensus       240 ~~~-~~~~l~s~~~d~~  255 (312)
                      +.. ...+-++...|..
T Consensus       486 ~~~~ed~~~~t~~~d~~  502 (559)
T KOG1334|consen  486 RERDEDSLTVTDPFDQY  502 (559)
T ss_pred             cccccccccccCcHHHH
Confidence            775 4455556555543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.7e-19  Score=139.22  Aligned_cols=214  Identities=11%  Similarity=0.144  Sum_probs=150.1

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcE
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV  111 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i  111 (312)
                      -.|+.|++.| .+||+|+.||.|.|||+.+..               +...+.+|..+|++++||++|+.|+++ .|..|
T Consensus        26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~---------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si   89 (405)
T KOG1273|consen   26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFR---------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI   89 (405)
T ss_pred             cceEEeccCc-ceeeeeccCCcEEEEEccccc---------------hhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence            6799999999 899999999999999999875               344458999999999999999988886 59999


Q ss_pred             EEEEcCCCcCCCCCcC--Cccc---------------ccCCCCCceEe--------cccC--Cc-eeeEEEEecCCCCEE
Q 021484          112 YLFEKNMGLGPSPLSL--SPED---------------LQKREEPQVYS--------GHRN--SQ-TVKGVNFFGPNDEYV  163 (312)
Q Consensus       112 ~iwd~~~~~~~~~~~~--~~~~---------------~~~~~~~~~~~--------~~~~--~~-~v~~v~~~s~~~~~l  163 (312)
                      .+||+..+.......+  ++|.               +.....+..+.        ....  .. ...+..| .+.|+++
T Consensus        90 ~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~f-dr~g~yI  168 (405)
T KOG1273|consen   90 KLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVF-DRRGKYI  168 (405)
T ss_pred             EEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccc-cCCCCEE
Confidence            9999988741111000  1111               00000000110        0000  00 1223335 8889999


Q ss_pred             EEeccCceEEEEeccCCeeEEEeecCc-cceEEEEEcCCCCeEEEEeCCCcEEEccCCCC-------CCCCCCCChh---
Q 021484          164 MSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-------DFPPLPDNAE---  232 (312)
Q Consensus       164 ~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-------~~~~~~~~~~---  232 (312)
                      ++|...|.+.+++..+.+++..++-.. ..|..+.++..|+.|+..+.|+.||.|+++.-       ++........   
T Consensus       169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN  248 (405)
T KOG1273|consen  169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN  248 (405)
T ss_pred             EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence            999999999999999999998887655 78999999999999999999999999997632       1111111111   


Q ss_pred             -hhhhhhccCCCCceeEEecCC-ceEEEEEecc
Q 021484          233 -KIMKANKQGREDHSRITLTPD-VIMHVLRLQR  263 (312)
Q Consensus       233 -~~~~~~~~~~~~~~l~s~~~d-~~i~i~~~~~  263 (312)
                       ......+++.++.++++++.. ..++||.-..
T Consensus       249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~  281 (405)
T KOG1273|consen  249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI  281 (405)
T ss_pred             hhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence             122333455688888887743 6788997443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=3.5e-21  Score=150.90  Aligned_cols=176  Identities=15%  Similarity=0.215  Sum_probs=139.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |.|||.+-..+...+...           ...|.++.|+|....+|+++++|+.|.+||+++....         .    
T Consensus       169 i~IWD~~R~~Pv~smswG-----------~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl---------~----  224 (433)
T KOG0268|consen  169 IDIWDEQRDNPVSSMSWG-----------ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPL---------K----  224 (433)
T ss_pred             eeecccccCCccceeecC-----------CCceeEEecCCCcchheeeeccCCceEEEecccCCcc---------c----
Confidence            458888766665555543           3469999999988789999999999999999988732         1    


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                       .+..  .-.-..|+|+|.+-.++++ .|..++.||++.-.               .++..+.+|...  |.+++| +|.
T Consensus       225 -KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---------------~p~~v~~dhvsA--V~dVdf-spt  283 (433)
T KOG0268|consen  225 -KVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---------------RPLNVHKDHVSA--VMDVDF-SPT  283 (433)
T ss_pred             -eeee--eccccceecCccccceeeccccccceehhhhhhc---------------ccchhhccccee--EEEecc-CCC
Confidence             1111  2234578999966666666 59999999998753               577888899866  999999 999


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeec-CccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                      |+-+++|+.|.+|+||..+.+..-..+.. ....|.++.|+-|.+++++||.|+.||+|....
T Consensus       284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence            99999999999999999987765443321 125799999999999999999999999998654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.4e-20  Score=150.59  Aligned_cols=186  Identities=14%  Similarity=0.221  Sum_probs=144.1

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++|.+.++.-..++.           .|=..|+|+.|+-++ ..|++|+.||.|.+|.+-..--..      +-....+
T Consensus       105 lYlWelssG~LL~v~~-----------aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~------~~~~~~p  166 (476)
T KOG0646|consen  105 LYLWELSSGILLNVLS-----------AHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSAD------NDHSVKP  166 (476)
T ss_pred             EEEEEeccccHHHHHH-----------hhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccc------cCCCccc
Confidence            4678887776433332           367789999999999 899999999999999985321100      0011234


Q ss_pred             cccccCCCccEEEEEEccCCC--eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec
Q 021484           81 RHLIGKNNIHITGLAYSNTSE--LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  157 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s  157 (312)
                      ...+..|.-+|+.+...+.|.  .|+++ .|.++++||+..+                .++..+...   ..+.+++. +
T Consensus       167 ~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----------------~LLlti~fp---~si~av~l-D  226 (476)
T KOG0646|consen  167 LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG----------------VLLLTITFP---SSIKAVAL-D  226 (476)
T ss_pred             eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc----------------eeeEEEecC---CcceeEEE-c
Confidence            444589999999999988753  67775 6999999999987                566655533   23899998 9


Q ss_pred             CCCCEEEEeccCceEEEEeccCC----------------eeEEEeecCcc--ceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          158 PNDEYVMSGSDCGHLFIWKKKGG----------------KLVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       158 ~~~~~l~~~~~dg~v~iwd~~~~----------------~~~~~~~~~~~--~v~~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                      |.+..++.|+.+|.|.+.++...                ..+..+.+|..  .|++++.+-+|..|++|+.||.|+|||+
T Consensus       227 pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  227 PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence            99999999999999999886532                23456678887  9999999999999999999999999999


Q ss_pred             CCCCC
Q 021484          220 MPTDF  224 (312)
Q Consensus       220 ~~~~~  224 (312)
                      .+..+
T Consensus       307 ~S~Q~  311 (476)
T KOG0646|consen  307 YSKQC  311 (476)
T ss_pred             chHHH
Confidence            87653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.8e-19  Score=132.00  Aligned_cols=202  Identities=16%  Similarity=0.230  Sum_probs=159.0

Q ss_pred             CCCccceEEEEEcC---CCCcEEEEEe-CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe
Q 021484           27 PMNSIRLNAIVIDP---RNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  102 (312)
Q Consensus        27 ~~h~~~v~~~~~~p---~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  102 (312)
                      ..|.+.|..++|-.   .+..+|++++ .|..|++-|...++               ..+.+.+|.+.|.++ ++=+|-+
T Consensus       133 nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~---------------~~~a~sghtghilal-yswn~~m  196 (350)
T KOG0641|consen  133 NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ---------------GFHALSGHTGHILAL-YSWNGAM  196 (350)
T ss_pred             eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC---------------cceeecCCcccEEEE-EEecCcE
Confidence            46889999999953   3336777754 57778777877775               233338999999886 4446778


Q ss_pred             EEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc--c---CCceeeEEEEecCCCCEEEEeccCceEEEEe
Q 021484          103 LISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--R---NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK  176 (312)
Q Consensus       103 l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd  176 (312)
                      +++++ |.+|++||++-.                .++.++...  .   ....|..++. .|.|++|++|..|....+||
T Consensus       197 ~~sgsqdktirfwdlrv~----------------~~v~~l~~~~~~~glessavaav~v-dpsgrll~sg~~dssc~lyd  259 (350)
T KOG0641|consen  197 FASGSQDKTIRFWDLRVN----------------SCVNTLDNDFHDGGLESSAVAAVAV-DPSGRLLASGHADSSCMLYD  259 (350)
T ss_pred             EEccCCCceEEEEeeecc----------------ceeeeccCcccCCCcccceeEEEEE-CCCcceeeeccCCCceEEEE
Confidence            99975 999999999865                343333211  1   1134899998 99999999999999999999


Q ss_pred             ccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC-----CCCChhhhhhhhccCCCCceeEEec
Q 021484          177 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-----LPDNAEKIMKANKQGREDHSRITLT  251 (312)
Q Consensus       177 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~s~~  251 (312)
                      ++.+++++.+..|...|.++.|+|...|+++++.|..|++-|++......     +.+|...++.+. |++..-.+++.+
T Consensus       260 irg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r-wh~~d~sfisss  338 (350)
T KOG0641|consen  260 IRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR-WHPQDFSFISSS  338 (350)
T ss_pred             eeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE-ecCccceeeecc
Confidence            99999999999999999999999999999999999999999998764332     335677776665 677777888999


Q ss_pred             CCceEEEEEec
Q 021484          252 PDVIMHVLRLQ  262 (312)
Q Consensus       252 ~d~~i~i~~~~  262 (312)
                      .|.+..+|.+.
T Consensus       339 adkt~tlwa~~  349 (350)
T KOG0641|consen  339 ADKTATLWALN  349 (350)
T ss_pred             CcceEEEeccC
Confidence            99999999753

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.1e-19  Score=157.86  Aligned_cols=197  Identities=18%  Similarity=0.272  Sum_probs=162.2

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  107 (312)
                      +...|.+++-..   ..|++|+.+++|..|.+.+++               ...++....-++..++++.+|+++|.+ +
T Consensus        55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~---------------~~~iL~Rftlp~r~~~v~g~g~~iaagsd  116 (933)
T KOG1274|consen   55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGE---------------EDTILARFTLPIRDLAVSGSGKMIAAGSD  116 (933)
T ss_pred             cCceeEEEeecc---cceEEeeccceEEEeeCCCCC---------------ccceeeeeeccceEEEEecCCcEEEeecC
Confidence            455677776644   589999999999999999875               222334456789999999999999987 5


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  187 (312)
                      |-.|++.++...                ...+.+++|..+  |.++.| +|.+++||+.+-||.|++||+.++.+...+.
T Consensus       117 D~~vK~~~~~D~----------------s~~~~lrgh~ap--Vl~l~~-~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~  177 (933)
T KOG1274|consen  117 DTAVKLLNLDDS----------------SQEKVLRGHDAP--VLQLSY-DPKGNFLAVSSCDGKVQIWDLQDGILSKTLT  177 (933)
T ss_pred             ceeEEEEecccc----------------chheeecccCCc--eeeeeE-cCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence            889999999887                678889999977  999999 9999999999999999999999988766664


Q ss_pred             cC--------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCC-ChhhhhhhhccCCCCceeEEecCCceEE
Q 021484          188 GD--------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-NAEKIMKANKQGREDHSRITLTPDVIMH  257 (312)
Q Consensus       188 ~~--------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~  257 (312)
                      +-        ...+..++|+|++..++..+.|+.|++|+..+.+. ..+.. +....+....|++.+.++++++.++.|-
T Consensus       178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~  257 (933)
T KOG1274|consen  178 GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQIL  257 (933)
T ss_pred             cCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEE
Confidence            31        34567899999999999999999999999988763 33332 3333367778999999999999999999


Q ss_pred             EEEec
Q 021484          258 VLRLQ  262 (312)
Q Consensus       258 i~~~~  262 (312)
                      |||..
T Consensus       258 vWnv~  262 (933)
T KOG1274|consen  258 VWNVD  262 (933)
T ss_pred             EEecc
Confidence            99988

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=1.3e-19  Score=138.32  Aligned_cols=212  Identities=16%  Similarity=0.198  Sum_probs=157.2

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCC-------CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSD-------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS  100 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  100 (312)
                      .|.+.|..++-+|..+++|+++..+       ..+.||.+....-....   .+..  ++..+-..+-+.|.++.|.|++
T Consensus        61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~---~tlE--~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS---STLE--CVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc---chhh--HhhcCCHHHhCceeeEEEcCCC
Confidence            4788999999999988888887542       35788998744311000   0111  2233333455689999999999


Q ss_pred             CeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-----cccCCceeeEEEEecC--CCCEEEEeccCceEE
Q 021484          101 ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-----GHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLF  173 (312)
Q Consensus       101 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~v~~~s~--~~~~l~~~~~dg~v~  173 (312)
                      ..+++-.|..|.+|++....               +....+.     .+...  .++-+| +|  +++.+++. .|+++.
T Consensus       136 ~klasm~dn~i~l~~l~ess---------------~~vaev~ss~s~e~~~~--ftsg~W-spHHdgnqv~tt-~d~tl~  196 (370)
T KOG1007|consen  136 DKLASMDDNNIVLWSLDESS---------------KIVAEVLSSESAEMRHS--FTSGAW-SPHHDGNQVATT-SDSTLQ  196 (370)
T ss_pred             CeeEEeccCceEEEEcccCc---------------chheeecccccccccce--eccccc-CCCCccceEEEe-CCCcEE
Confidence            99999889999999998762               1112221     12322  677788 66  57777665 589999


Q ss_pred             EEeccCCeeEEEe-ecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEE
Q 021484          174 IWKKKGGKLVRLM-VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRIT  249 (312)
Q Consensus       174 iwd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s  249 (312)
                      .||+++.++...+ .+|...|.++.|+|+.++ |++|+.||.|+|||.+..+  +..+++|...+...-+......++++
T Consensus       197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs  276 (370)
T KOG1007|consen  197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS  276 (370)
T ss_pred             EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence            9999998776666 478889999999999876 9999999999999998765  57888999988766544446789999


Q ss_pred             ecCCceEEEEEecc
Q 021484          250 LTPDVIMHVLRLQR  263 (312)
Q Consensus       250 ~~~d~~i~i~~~~~  263 (312)
                      ++.|..+.+|....
T Consensus       277 ~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  277 GGSDSAVNLSCASS  290 (370)
T ss_pred             cCCCceeEEEeccc
Confidence            99999999997543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=9e-20  Score=140.18  Aligned_cols=212  Identities=14%  Similarity=0.168  Sum_probs=149.1

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc--CCCeEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLI  104 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~  104 (312)
                      .+|.+-|.++.|++.| +.+|+++.|++++|||..+..           ..+....-...|.+.|..+.|.+  -|+.+|
T Consensus        10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s-----------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA   77 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDS-----------GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVA   77 (361)
T ss_pred             cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCC-----------CceEEeeeEEecCCcEEEEEecCccccceEE
Confidence            4688999999999999 899999999999999975432           11122222378999999999976  467899


Q ss_pred             Eec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC--CCEEEEeccCceEEEEeccCC-
Q 021484          105 SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGG-  180 (312)
Q Consensus       105 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~--~~~l~~~~~dg~v~iwd~~~~-  180 (312)
                      +++ |+++.||.-....  ....     -.......++......  |+++.| .|.  |-.|++++.||.|+||+.-.. 
T Consensus        78 ~cS~Drtv~iWEE~~~~--~~~~-----~~~Wv~~ttl~Dsrss--V~DV~F-aP~hlGLklA~~~aDG~lRIYEA~dp~  147 (361)
T KOG2445|consen   78 TCSYDRTVSIWEEQEKS--EEAH-----GRRWVRRTTLVDSRSS--VTDVKF-APKHLGLKLAAASADGILRIYEAPDPM  147 (361)
T ss_pred             EEecCCceeeeeecccc--cccc-----cceeEEEEEeecCCcc--eeEEEe-cchhcceEEEEeccCcEEEEEecCCcc
Confidence            975 9999999753110  0000     0111233445555544  999999 775  667899999999999984210 


Q ss_pred             -------------------e-----------------------------------------------eEEEeecCccceE
Q 021484          181 -------------------K-----------------------------------------------LVRLMVGDRHVVN  194 (312)
Q Consensus       181 -------------------~-----------------------------------------------~~~~~~~~~~~v~  194 (312)
                                         +                                               .+.++.+|+.+|+
T Consensus       148 nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~  227 (361)
T KOG2445|consen  148 NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIR  227 (361)
T ss_pred             ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcce
Confidence                               0                                               0114456888999


Q ss_pred             EEEEcCCC----CeEEEEeCCCcEEEccCCCCC---------------------CCCCCCChhhhhhhhccCCCCceeEE
Q 021484          195 QLEPHPHI----PMFATCGIEKTVKLWAPMPTD---------------------FPPLPDNAEKIMKANKQGREDHSRIT  249 (312)
Q Consensus       195 ~~~~~p~~----~~l~t~~~d~~i~iwd~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~s  249 (312)
                      +++|.|+-    ..||+++.|| |+||.+....                     +..+.+|...+.... |...+..|.+
T Consensus       228 di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~-wNmtGtiLsS  305 (361)
T KOG2445|consen  228 DISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVR-WNMTGTILSS  305 (361)
T ss_pred             eeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEE-EeeeeeEEee
Confidence            99999963    3599999999 9999987411                     122334555554443 4556889999


Q ss_pred             ecCCceEEEEEec
Q 021484          250 LTPDVIMHVLRLQ  262 (312)
Q Consensus       250 ~~~d~~i~i~~~~  262 (312)
                      .+.||.+|+|...
T Consensus       306 tGdDG~VRLWkan  318 (361)
T KOG2445|consen  306 TGDDGCVRLWKAN  318 (361)
T ss_pred             cCCCceeeehhhh
Confidence            9999999999754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.84  E-value=1.6e-20  Score=153.12  Aligned_cols=213  Identities=14%  Similarity=0.132  Sum_probs=163.9

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |-||||.++.+.-.......         .-..++++.+|+. ++..++..||.|.|||+....+              +
T Consensus       489 lsiWDLAapTprikaeltss---------apaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~--------------V  544 (705)
T KOG0639|consen  489 LSIWDLAAPTPRIKAELTSS---------APACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTL--------------V  544 (705)
T ss_pred             eeeeeccCCCcchhhhcCCc---------chhhhhhhcCCcc-ceeeeeccCCcEEEEEccccee--------------e
Confidence            46899987654322222111         1246789999998 7888999999999999998762              2


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+ .+|.+.+.||..+++|..|=++. |++|+.||++.+                +.++   .|.-...|.++.+ .|.
T Consensus       545 rqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlreg----------------rqlq---qhdF~SQIfSLg~-cP~  603 (705)
T KOG0639|consen  545 RQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG----------------RQLQ---QHDFSSQIFSLGY-CPT  603 (705)
T ss_pred             ecc-cCCCCCceeEEecCCCceeecCCCccceeehhhhhh----------------hhhh---hhhhhhhheeccc-CCC
Confidence            233 89999999999999999888875 999999999876                3332   2322234999998 999


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKAN  238 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~  238 (312)
                      +.+|+.|-+.+.+.+..... .....+..|...|.++.|.+.|+++++.+.|..+..|..--+. +.... ....++.+ 
T Consensus       604 ~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsC-  680 (705)
T KOG0639|consen  604 GDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSC-  680 (705)
T ss_pred             ccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceee-
Confidence            99999999999999988764 4445677799999999999999999999999999999865443 33333 33444443 


Q ss_pred             ccCCCCceeEEecCCceEEEEEe
Q 021484          239 KQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       239 ~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .++.++.++++|+.|..-.++.+
T Consensus       681 DIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  681 DISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eeccCceEEEecCCCcceEEEEE
Confidence            47788999999999987777654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.84  E-value=4.8e-18  Score=140.26  Aligned_cols=248  Identities=13%  Similarity=0.104  Sum_probs=163.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+..            ...+.+++|+|++..++++++.++.|++||..+++...             
T Consensus        13 v~~~d~~t~~~~~~~~~------------~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-------------   67 (300)
T TIGR03866        13 ISVIDTATLEVTRTFPV------------GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG-------------   67 (300)
T ss_pred             EEEEECCCCceEEEEEC------------CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE-------------
Confidence            57899887664444332            12356899999984445677889999999998876321             


Q ss_pred             cccccCCCccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                       .+ ..+. .+..++|+|+++.+++ + .++.+++||+.+.                +.+..+... ..  +.+++| +|
T Consensus        68 -~~-~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~----------------~~~~~~~~~-~~--~~~~~~-~~  124 (300)
T TIGR03866        68 -TL-PSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETR----------------KVLAEIPVG-VE--PEGMAV-SP  124 (300)
T ss_pred             -ec-cCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCC----------------eEEeEeeCC-CC--cceEEE-CC
Confidence             11 1222 2457899999986654 4 4899999999875                444444422 22  678998 99


Q ss_pred             CCCEEEEeccCc-eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCCCCC-CCCCCCh----
Q 021484          159 NDEYVMSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDF-PPLPDNA----  231 (312)
Q Consensus       159 ~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~-~~~~~~~----  231 (312)
                      ++++++++..++ .+.+||..+++....+.. ...+..++|+|+++.++++ ..++.|++||+.+++. ..+..+.    
T Consensus       125 dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~  203 (300)
T TIGR03866       125 DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH  203 (300)
T ss_pred             CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc
Confidence            999999888765 567789988877665543 2345789999999987544 4699999999988753 2221111    


Q ss_pred             -hhh-hhhhccCCCCcee-EEecCCceEEEEEecccCccce---------eEeecCCCccCCC-CCCCeEEEeecCCCC
Q 021484          232 -EKI-MKANKQGREDHSR-ITLTPDVIMHVLRLQRRQTLAY---------RERRYNAADFESD-EEEGETYLLGFSDSD  297 (312)
Q Consensus       232 -~~~-~~~~~~~~~~~~l-~s~~~d~~i~i~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~v~~~~~~~~~  297 (312)
                       ... .....+++++..+ ++...++.+.+||+.+......         ..+.|++..+... ..++.|.++|...+.
T Consensus       204 ~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       204 PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence             111 1122356666664 4556677899999865432211         2456666666554 456778999887765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=3.7e-19  Score=136.81  Aligned_cols=202  Identities=20%  Similarity=0.206  Sum_probs=140.7

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  107 (312)
                      |..++.+++|.+.  ..+++|+.||.|+.+|+.++.                ...+..|..+|.+|.+++....++++ -
T Consensus        53 ~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~----------------~~~igth~~~i~ci~~~~~~~~vIsgsW  114 (323)
T KOG1036|consen   53 HGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGN----------------EDQIGTHDEGIRCIEYSYEVGCVISGSW  114 (323)
T ss_pred             cCCceeeeeccCC--ceEEEeccCceEEEEEecCCc----------------ceeeccCCCceEEEEeeccCCeEEEccc
Confidence            7889999999985  589999999999999999875                12237899999999999876666666 4


Q ss_pred             CCcEEEEEcCCCc-----------------------CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE
Q 021484          108 DELVYLFEKNMGL-----------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM  164 (312)
Q Consensus       108 d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~  164 (312)
                      |++|++||.+...                       +.....+..+++.++..........-.-.++++++ -|++.=.+
T Consensus       115 D~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~-~pn~eGy~  193 (323)
T KOG1036|consen  115 DKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVAL-VPNGEGYV  193 (323)
T ss_pred             CccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEE-ecCCCceE
Confidence            9999999998432                       11122233344444332221111111123889998 67877788


Q ss_pred             EeccCceEEEEeccCC----eeEEEeecCcc---------ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCC
Q 021484          165 SGSDCGHLFIWKKKGG----KLVRLMVGDRH---------VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDN  230 (312)
Q Consensus       165 ~~~~dg~v~iwd~~~~----~~~~~~~~~~~---------~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~  230 (312)
                      +++-||+|.+=.+++.    +....|+.|..         +|++++|||-...|+||+.||.|.+||+...+ +..+...
T Consensus       194 ~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~  273 (323)
T KOG1036|consen  194 VSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY  273 (323)
T ss_pred             EEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence            9999999998776655    33445566642         79999999999999999999999999998875 4555544


Q ss_pred             hhhhhhhhccCCCCceeEEe
Q 021484          231 AEKIMKANKQGREDHSRITL  250 (312)
Q Consensus       231 ~~~~~~~~~~~~~~~~l~s~  250 (312)
                      ...+ ....++.++..|+.+
T Consensus       274 ~~SI-~slsfs~dG~~LAia  292 (323)
T KOG1036|consen  274 ETSI-SSLSFSMDGSLLAIA  292 (323)
T ss_pred             CCce-EEEEeccCCCeEEEE
Confidence            3334 222244444444433

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.3e-19  Score=145.63  Aligned_cols=216  Identities=14%  Similarity=0.125  Sum_probs=157.0

Q ss_pred             ceEEEEEcCC------CCcEEEEEeCCCeEEEEEccCCeecCC-CCCCC---Ccc--cccccccccCCCccEEEEEEccC
Q 021484           32 RLNAIVIDPR------NPNYFAVGGSDEYARVYDIRKCHWYSP-ISSDT---PVD--TFCPRHLIGKNNIHITGLAYSNT   99 (312)
Q Consensus        32 ~v~~~~~~p~------~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~---~~~--~~~~~~~~~~~~~~i~~~~~~~~   99 (312)
                      ...|++|...      .++++|.|+.|..|.|||+.-...+.. ...+.   ...  .-.......+|+..|.+++|+..
T Consensus       175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~  254 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN  254 (463)
T ss_pred             cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence            3456666432      127999999999999999873321100 00000   000  00011222478999999999987


Q ss_pred             CC-eEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEec
Q 021484          100 SE-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK  177 (312)
Q Consensus       100 ~~-~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~  177 (312)
                      -+ +||+++ |.+|.+||+.++                ++.+++..|...  |.++.|++....+|++|+.|++|.+.|.
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g----------------~p~~s~~~~~k~--Vq~l~wh~~~p~~LLsGs~D~~V~l~D~  316 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTG----------------KPKSSITHHGKK--VQTLEWHPYEPSVLLSGSYDGTVALKDC  316 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCC----------------CcceehhhcCCc--eeEEEecCCCceEEEeccccceEEeeec
Confidence            75 888875 999999999998                788888877755  9999997778999999999999999999


Q ss_pred             cCCeeE-EEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484          178 KGGKLV-RLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPD  253 (312)
Q Consensus       178 ~~~~~~-~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  253 (312)
                      +..... ..++ ..+.|-.++|.|.... ++.+..||+|+-+|++...  +.++..|...+-.+........++++++.+
T Consensus       317 R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d  395 (463)
T KOG0270|consen  317 RDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD  395 (463)
T ss_pred             cCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecccc
Confidence            843222 2333 4578999999998766 7777799999999998763  466667777775444444467889999999


Q ss_pred             ceEEEEEecccCc
Q 021484          254 VIMHVLRLQRRQT  266 (312)
Q Consensus       254 ~~i~i~~~~~~~~  266 (312)
                      +.+++|++...+.
T Consensus       396 ~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  396 KVVKLWKFDVDSP  408 (463)
T ss_pred             ceEEEEeecCCCC
Confidence            9999999875543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.83  E-value=4.5e-19  Score=148.50  Aligned_cols=257  Identities=8%  Similarity=0.057  Sum_probs=170.1

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  105 (312)
                      ..|...|.+++|-| +..+|++++.|.++++||+.+.+++.             ..+..+|...+.+++|.|... .+++
T Consensus        97 ~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G-------------~~~~~GH~~SvkS~cf~~~n~~vF~t  162 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVG-------------GRLNLGHTGSVKSECFMPTNPAVFCT  162 (720)
T ss_pred             ccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeec-------------ceeecccccccchhhhccCCCcceee
Confidence            45999999999999 65899999999999999999887531             123479999999999999886 6777


Q ss_pred             e-cCCcEEEEEcCCCcCC----CCCcCCccc---ccCC----CCCceEecccCC--ceeeEEEEecCCCCEEEEecc-Cc
Q 021484          106 Y-NDELVYLFEKNMGLGP----SPLSLSPED---LQKR----EEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGSD-CG  170 (312)
Q Consensus       106 ~-~d~~i~iwd~~~~~~~----~~~~~~~~~---~~~~----~~~~~~~~~~~~--~~v~~v~~~s~~~~~l~~~~~-dg  170 (312)
                      | .||.|.|||++-....    ....+...-   ....    +.+.....+...  ..|+.+.|  .|...|++++. |+
T Consensus       163 GgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~  240 (720)
T KOG0321|consen  163 GGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADS  240 (720)
T ss_pred             ccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCc
Confidence            6 5999999999754200    000000000   0000    111111122211  12445544  78888998888 99


Q ss_pred             eEEEEeccCCeeEE--------EeecC---ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC---CCCChhhh-h
Q 021484          171 HLFIWKKKGGKLVR--------LMVGD---RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP---LPDNAEKI-M  235 (312)
Q Consensus       171 ~v~iwd~~~~~~~~--------~~~~~---~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~---~~~~~~~~-~  235 (312)
                      .|+|||++......        .+..|   .-.++++.....|.+|.+.+.|+.|.+|++.+..+..   +.++...- +
T Consensus       241 ~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~  320 (720)
T KOG0321|consen  241 TIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFY  320 (720)
T ss_pred             ceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceee
Confidence            99999998654322        12223   2357788888889998888889999999998876433   22333222 2


Q ss_pred             hhhccCCCCceeEEecCCceEEEEEecccCccce-----------eEeec-CCCccCCCCCCCeEEEeecCCCCCC
Q 021484          236 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY-----------RERRY-NAADFESDEEEGETYLLGFSDSDAS  299 (312)
Q Consensus       236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~  299 (312)
                      .....++++.++++++.|....+|.+........           ..+.+ ....++...++-++-+|++.++-++
T Consensus       321 vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e  396 (720)
T KOG0321|consen  321 VKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEE  396 (720)
T ss_pred             eeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhh
Confidence            2233566899999999999999999876532211           12222 2334445578888999999665433

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.6e-20  Score=166.59  Aligned_cols=207  Identities=14%  Similarity=0.192  Sum_probs=164.4

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccc-ccCCCccEEEEEEccCCC-eEEE
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSNTSE-LLIS  105 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~-~l~s  105 (312)
                      -|.+.|..+.|++..+++||+|+.||.|.|||+..-+              .+.+. -....+.|.+++|+..-. +|++
T Consensus       114 ~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~--------------tP~~~~~~~~~~eI~~lsWNrkvqhILAS  179 (1049)
T KOG0307|consen  114 KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE--------------TPFTPGSQAPPSEIKCLSWNRKVSHILAS  179 (1049)
T ss_pred             ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC--------------CCCCCCCCCCcccceEeccchhhhHHhhc
Confidence            4899999999999887899999999999999998754              11111 122467899999998764 7777


Q ss_pred             e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCc---eEEEEeccC-
Q 021484          106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCG---HLFIWKKKG-  179 (312)
Q Consensus       106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg---~v~iwd~~~-  179 (312)
                      + .+|.+.|||++..                +.+..+..+.....+..++| +|+ ...|+++++|.   .|.+||++. 
T Consensus       180 ~s~sg~~~iWDlr~~----------------~pii~ls~~~~~~~~S~l~W-hP~~aTql~~As~dd~~PviqlWDlR~a  242 (1049)
T KOG0307|consen  180 GSPSGRAVIWDLRKK----------------KPIIKLSDTPGRMHCSVLAW-HPDHATQLLVASGDDSAPVIQLWDLRFA  242 (1049)
T ss_pred             cCCCCCceeccccCC----------------CcccccccCCCccceeeeee-CCCCceeeeeecCCCCCceeEeeccccc
Confidence            6 4889999999987                56666666655445889999 665 45666666544   599999885 


Q ss_pred             CeeEEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEE
Q 021484          180 GKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMH  257 (312)
Q Consensus       180 ~~~~~~~~~~~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  257 (312)
                      ..+++++.+|...|.++.|++.+ +++++++.|+.|.+|+.+++++ ..++...++.....|...+...+...+.||.|.
T Consensus       243 ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~  322 (1049)
T KOG0307|consen  243 SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS  322 (1049)
T ss_pred             CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence            45678888999999999999987 6799999999999999999885 667766677766665555677888899999999


Q ss_pred             EEEecccC
Q 021484          258 VLRLQRRQ  265 (312)
Q Consensus       258 i~~~~~~~  265 (312)
                      |+.+....
T Consensus       323 I~sl~~~~  330 (1049)
T KOG0307|consen  323 IYSLQGTD  330 (1049)
T ss_pred             eeeeecCC
Confidence            99987653

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.83  E-value=2.7e-19  Score=136.51  Aligned_cols=206  Identities=14%  Similarity=0.214  Sum_probs=156.1

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc--CCCeEEEe
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISY  106 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~  106 (312)
                      |-+.|.|+.|.|++ ..+++-. |..|.+|++....-+        +.... ...-..+....++-+|+|  +|..+++.
T Consensus       122 avg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~--------vaev~-ss~s~e~~~~ftsg~WspHHdgnqv~tt  190 (370)
T KOG1007|consen  122 AVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKI--------VAEVL-SSESAEMRHSFTSGAWSPHHDGNQVATT  190 (370)
T ss_pred             HhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcch--------heeec-ccccccccceecccccCCCCccceEEEe
Confidence            55689999999987 5666554 889999999876521        11111 111133566788889998  67899999


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCc-eEecccCCceeeEEEEecCCCC-EEEEeccCceEEEEeccC-CeeE
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKG-GKLV  183 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~-~~~~  183 (312)
                      +|+++..||+++.                +... .-..|...  |..+.| +|+.+ +|++|+.||.|++||.+. ..++
T Consensus       191 ~d~tl~~~D~RT~----------------~~~~sI~dAHgq~--vrdlDf-Npnkq~~lvt~gDdgyvriWD~R~tk~pv  251 (370)
T KOG1007|consen  191 SDSTLQFWDLRTM----------------KKNNSIEDAHGQR--VRDLDF-NPNKQHILVTCGDDGYVRIWDTRKTKFPV  251 (370)
T ss_pred             CCCcEEEEEccch----------------hhhcchhhhhcce--eeeccC-CCCceEEEEEcCCCccEEEEeccCCCccc
Confidence            9999999999986                3333 23355544  999999 77755 578999999999999874 5688


Q ss_pred             EEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCC------------------------------CCCCCCCCChh
Q 021484          184 RLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMP------------------------------TDFPPLPDNAE  232 (312)
Q Consensus       184 ~~~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~------------------------------~~~~~~~~~~~  232 (312)
                      ..+.+|...|.+|.|+|... ++++++.|..|.+|...+                              +.+.++..|..
T Consensus       252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED  331 (370)
T KOG1007|consen  252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED  331 (370)
T ss_pred             cccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence            99999999999999999765 588999999999996431                              12335556788


Q ss_pred             hhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          233 KIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       233 ~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      .++.+.|.+.+.-.+++.+.||.+.|=++.+.
T Consensus       332 SVY~~aWSsadPWiFASLSYDGRviIs~V~r~  363 (370)
T KOG1007|consen  332 SVYALAWSSADPWIFASLSYDGRVIISSVPRF  363 (370)
T ss_pred             ceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence            88888877778888899999999888766543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.83  E-value=2.8e-19  Score=153.87  Aligned_cols=197  Identities=13%  Similarity=0.128  Sum_probs=161.3

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE  109 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~  109 (312)
                      ..+++++.++-| ++.+.|++.|.|-+|++++|-....         |.   --..|..+|++++...-++.++++ .+|
T Consensus       449 ~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~s---------f~---~~~ah~~~V~gla~D~~n~~~vsa~~~G  515 (910)
T KOG1539|consen  449 INATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKS---------FG---DSPAHKGEVTGLAVDGTNRLLVSAGADG  515 (910)
T ss_pred             cceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecc---------cc---cCccccCceeEEEecCCCceEEEccCcc
Confidence            568999999999 8999999999999999999863322         10   115789999999998888888885 699


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  189 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  189 (312)
                      .+.+||..+.                .+...+.-..   .+.++.+ +.....++.+..|-.|.++|..+.+.++.+.+|
T Consensus       516 ilkfw~f~~k----------------~l~~~l~l~~---~~~~iv~-hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh  575 (910)
T KOG1539|consen  516 ILKFWDFKKK----------------VLKKSLRLGS---SITGIVY-HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH  575 (910)
T ss_pred             eEEEEecCCc----------------ceeeeeccCC---Ccceeee-eehhhhhhhhcCceeEEEEEchhhhhhHHhhcc
Confidence            9999999876                4444443222   2777877 777888999999999999999999999999999


Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC-ceEEEEEe
Q 021484          190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD-VIMHVLRL  261 (312)
Q Consensus       190 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~i~~~  261 (312)
                      ...|++++|||+|+++++++.|++||+||+.++.+.... +...+.....++|++.+|++...| .-|++|.-
T Consensus       576 ~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  576 GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-ecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            999999999999999999999999999999998753332 233344555688999999999988 78999963

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=3.9e-18  Score=131.27  Aligned_cols=153  Identities=14%  Similarity=0.187  Sum_probs=123.5

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  109 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  109 (312)
                      ...|.++.|+|.. ..|++++.||++++|++....+...                ..|..++.+.+|.++.+.+..+.||
T Consensus        13 ~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~~~----------------~~~~~plL~c~F~d~~~~~~G~~dg   75 (323)
T KOG1036|consen   13 EDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLKLK----------------FKHGAPLLDCAFADESTIVTGGLDG   75 (323)
T ss_pred             hhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhhhh----------------eecCCceeeeeccCCceEEEeccCc
Confidence            5689999999988 6777888999999999987642211                4578899999999876666666799


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  189 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  189 (312)
                      .|+.+|+.++                 ....+..|..+  +.++.+ .+....+++|+.|++|++||.+...++..+...
T Consensus        76 ~vr~~Dln~~-----------------~~~~igth~~~--i~ci~~-~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~  135 (323)
T KOG1036|consen   76 QVRRYDLNTG-----------------NEDQIGTHDEG--IRCIEY-SYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG  135 (323)
T ss_pred             eEEEEEecCC-----------------cceeeccCCCc--eEEEEe-eccCCeEEEcccCccEEEEeccccccccccccC
Confidence            9999999986                 33445567755  999999 788889999999999999999976666555533


Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       190 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                       ..|.++..  .++.|+.|+.|..+.+||++..
T Consensus       136 -kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen  136 -KKVYCMDV--SGNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             -ceEEEEec--cCCEEEEeecCceEEEEEcccc
Confidence             47877765  6778999999999999998853

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.82  E-value=4.2e-18  Score=139.18  Aligned_cols=258  Identities=11%  Similarity=0.093  Sum_probs=184.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      +.+|+++.+...+..-....+       -+..|.|++|.+++  -++||.++|.|.||+..+.+              ..
T Consensus       224 ~~Fw~~~~~~l~k~~~~fek~-------ekk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~--------------~~  280 (626)
T KOG2106|consen  224 LYFWTLRGGSLVKRQGIFEKR-------EKKFVLCVTFLENG--DVITGDSGGNILIWSKGTNR--------------IS  280 (626)
T ss_pred             EEEEEccCCceEEEeeccccc-------cceEEEEEEEcCCC--CEEeecCCceEEEEeCCCce--------------EE
Confidence            357887766543333222211       13679999999998  58999999999999998766              34


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCccc-------------------------ccCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPED-------------------------LQKR  135 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~-------------------------~~~~  135 (312)
                      +.. ..|.+.|.+++.-.+|.+|..+.|..|..||-. ........++...                         ....
T Consensus       281 k~~-~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~  358 (626)
T KOG2106|consen  281 KQV-HAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN  358 (626)
T ss_pred             eEe-eecCCceEEEEEecCccEeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence            444 389999999999999998884569999999932 2111111111111                         0111


Q ss_pred             CCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEE
Q 021484          136 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK  215 (312)
Q Consensus       136 ~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~  215 (312)
                      .......+|...  ...++. +|+.+++++++.|+.+++|+  ..+++-... -..++.++.|+|.| .+|.|...|...
T Consensus       359 ~f~~~v~gh~de--lwgla~-hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~  431 (626)
T KOG2106|consen  359 GFTLTVQGHGDE--LWGLAT-HPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWF  431 (626)
T ss_pred             CceEEEEecccc--eeeEEc-CCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEE
Confidence            223334567655  888988 89999999999999999999  445544433 34678899999999 999999999999


Q ss_pred             EccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC------------ccceeEeecCCCccCCCC
Q 021484          216 LWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ------------TLAYRERRYNAADFESDE  283 (312)
Q Consensus       216 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~------------~~~~~~~~~~~~~~~~~~  283 (312)
                      +.|.+++...++... +..+....+++++.+++.++.|+.|+++.+....            .+....++++.+.+.+..
T Consensus       432 V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S  510 (626)
T KOG2106|consen  432 VLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS  510 (626)
T ss_pred             EEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence            999999776555534 5556778889999999999999999999886532            222236677777777666


Q ss_pred             CCCeEEEe
Q 021484          284 EEGETYLL  291 (312)
Q Consensus       284 ~~~~v~~~  291 (312)
                      .+-.++.|
T Consensus       511 ~d~eiLyW  518 (626)
T KOG2106|consen  511 GDYEILYW  518 (626)
T ss_pred             CceEEEEE
Confidence            55556666

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=4.4e-19  Score=144.61  Aligned_cols=253  Identities=13%  Similarity=0.082  Sum_probs=183.4

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      ++|||..+......+..++.+         -.+.++.|+..+--.+++.+.|..+++|.-.... -          +...
T Consensus        14 ~kl~D~s~~~~~~~~~~~t~~---------pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~-~----------~Vp~   73 (673)
T KOG4378|consen   14 TKLSDFSDLETKSEYVHQTAE---------PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT-P----------EVPR   73 (673)
T ss_pred             eEEeecccccCccccccCCCC---------CcceeeeccccceEEEeecCCceeEEEecccCCC-C----------ccce
Confidence            578998877766666665544         2489999998762223334678889998755331 0          0011


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      .....  ...-.|++......+++++ ..+.|+|||++..                .+.+.+++|...  |+++.| +-.
T Consensus        74 ~~k~~--gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k----------------l~hr~lkdh~st--vt~v~Y-N~~  132 (673)
T KOG4378|consen   74 VRKLT--GDNAFCVACASQSLYEISGGQSGCVKIWDLRAK----------------LIHRFLKDHQST--VTYVDY-NNT  132 (673)
T ss_pred             eeccc--cchHHHHhhhhcceeeeccCcCceeeehhhHHH----------------HHhhhccCCcce--eEEEEe-cCC
Confidence            11111  2233455555555788886 5999999999875                566788889855  999999 889


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCc-cceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC-CCC-CCChhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF-PPL-PDNAEKIM  235 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~-~~~-~~~~~~~~  235 (312)
                      ..||++++..|.|.|..+.++.....|.... ..|.-+.|+|..+. |.+++.+|.|.+||..+... ..+ ..|..+. 
T Consensus       133 DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~-  211 (673)
T KOG4378|consen  133 DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC-  211 (673)
T ss_pred             cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCc-
Confidence            9999999999999999999998888887543 45668999999887 77889999999999998874 333 2344444 


Q ss_pred             hhhccCC-CCceeEEecCCceEEEEEecccC---------ccceeEeecCCCccCCCCCCCeEEEeecCC
Q 021484          236 KANKQGR-EDHSRITLTPDVIMHVLRLQRRQ---------TLAYRERRYNAADFESDEEEGETYLLGFSD  295 (312)
Q Consensus       236 ~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  295 (312)
                      .-.++++ +..++++.+.|..|.++|+....         .+.-..+.+.+..+..+...|+++.+|...
T Consensus       212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             CcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence            4444565 67789999999999999987542         222237788888999999999999988743

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.82  E-value=6e-19  Score=149.76  Aligned_cols=217  Identities=18%  Similarity=0.272  Sum_probs=165.3

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC---CeEEE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---ELLIS  105 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s  105 (312)
                      -+.++.+++.+|++ +.||+|..-|.+++|++...+.               ...+..|...|.++.|+..-   ++||+
T Consensus       458 ~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~---------------~~~~eAHesEilcLeyS~p~~~~kLLAS  521 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEY---------------TCFMEAHESEILCLEYSFPVLTNKLLAS  521 (1080)
T ss_pred             cccceEEEEECCCc-ceecccCccCceEEEEehhhhh---------------hhheecccceeEEEeecCchhhhHhhhh
Confidence            45689999999999 8999999999999999987652               22237899999999998643   58888


Q ss_pred             e-cCCcEEEEEcCCCcCCC------CCcCCc-----cc------------------ccCCCCCceEeccc---CCceeeE
Q 021484          106 Y-NDELVYLFEKNMGLGPS------PLSLSP-----ED------------------LQKREEPQVYSGHR---NSQTVKG  152 (312)
Q Consensus       106 ~-~d~~i~iwd~~~~~~~~------~~~~~~-----~~------------------~~~~~~~~~~~~~~---~~~~v~~  152 (312)
                      + .|..|.+||+.......      ..++..     .+                  .++..-...|..|.   ....+..
T Consensus       522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD  601 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD  601 (1080)
T ss_pred             ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEE
Confidence            7 49999999997653110      000000     00                  11000111121111   1123778


Q ss_pred             EEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec---CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCC
Q 021484          153 VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP  228 (312)
Q Consensus       153 v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~  228 (312)
                      ++. .|..+++++++.|..|+||++.+++..+.|++   |.+..-.+...|.|.|+++.+.|+++.++|..+++. ..+.
T Consensus       602 m~V-dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~  680 (1080)
T KOG1408|consen  602 MAV-DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT  680 (1080)
T ss_pred             eee-CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence            887 88999999999999999999999999999974   556777899999999999999999999999998874 7777


Q ss_pred             CChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          229 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      +|...+. -..+.++-.-|++.+.|+.|.+|.+..
T Consensus       681 GHsE~VT-G~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  681 GHSEAVT-GVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             Ccchhee-eeeecccchhheeecCCceEEEEECch
Confidence            8887774 445788899999999999999998754

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.82  E-value=1.7e-19  Score=139.83  Aligned_cols=218  Identities=15%  Similarity=0.151  Sum_probs=153.1

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||...|+.+.|+|..++++++++.|..||+|++++..++.            ...-..+|.+.|.++.|+++|.+++++
T Consensus       132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~------------VfGG~egHrdeVLSvD~~~~gd~i~Sc  199 (385)
T KOG1034|consen  132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVA------------VFGGVEGHRDEVLSVDFSLDGDRIASC  199 (385)
T ss_pred             eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEE------------EecccccccCcEEEEEEcCCCCeeecc
Confidence            46999999999999999999999999999999999988542            222237899999999999999999996


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCC--ccc------ccCC-CCCc---eEecccCCceeeEEEEecCCCCEEEEeccCceEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLS--PED------LQKR-EEPQ---VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF  173 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~--~~~------~~~~-~~~~---~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~  173 (312)
                       .|.+|.+|++....-.......  ...      +.+. ...-   +-.-|.  .+|-|+.|+   |+++++-+-++.|.
T Consensus       200 GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr--nyVDCvrw~---gd~ilSkscenaI~  274 (385)
T KOG1034|consen  200 GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR--NYVDCVRWF---GDFILSKSCENAIV  274 (385)
T ss_pred             CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc--chHHHHHHH---hhheeecccCceEE
Confidence             5999999999844211111000  000      0000 0111   112344  348888884   78999999999999


Q ss_pred             EEec-cCCee-------------EEEeecCccceEEE--EEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCC----Chhh
Q 021484          174 IWKK-KGGKL-------------VRLMVGDRHVVNQL--EPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD----NAEK  233 (312)
Q Consensus       174 iwd~-~~~~~-------------~~~~~~~~~~v~~~--~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~----~~~~  233 (312)
                      .|.. +-.+.             +..+.-....|.-+  +|.|-+++||.|...|.|.+||++..+......    ....
T Consensus       275 ~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~  354 (385)
T KOG1034|consen  275 CWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGS  354 (385)
T ss_pred             EEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccc
Confidence            9986 21111             22333333445544  456778899999999999999999876532221    2234


Q ss_pred             hhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          234 IMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       234 ~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .+.-..++.++..|+....|+++--||.
T Consensus       355 tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  355 TVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             eeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            4555667889999999999999888873

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.82  E-value=9.5e-19  Score=133.67  Aligned_cols=169  Identities=14%  Similarity=0.158  Sum_probs=135.2

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  105 (312)
                      +.+..+++++.|+.-+++++.+.+-|-+..|||++++..            ..+++.+..|...|..++|...+. ++|+
T Consensus       147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------------~~vkTQLIAHDKEV~DIaf~~~s~~~FAS  214 (364)
T KOG0290|consen  147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------------GTVKTQLIAHDKEVYDIAFLKGSRDVFAS  214 (364)
T ss_pred             cccCCcccccccccCCcceeEeecccCeEEEEEEeeccc------------cceeeEEEecCcceeEEEeccCccceEEE
Confidence            347899999999998889999999999999999998731            134555588999999999999775 7777


Q ss_pred             -ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC-ceEEEEeccC-Cee
Q 021484          106 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-GHLFIWKKKG-GKL  182 (312)
Q Consensus       106 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d-g~v~iwd~~~-~~~  182 (312)
                       |.||.+++||++...               .....++......+...++|...+.+++|+-..| ..|.|.|++. +.+
T Consensus       215 vgaDGSvRmFDLR~le---------------HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp  279 (364)
T KOG0290|consen  215 VGADGSVRMFDLRSLE---------------HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP  279 (364)
T ss_pred             ecCCCcEEEEEecccc---------------cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc
Confidence             469999999998752               2233344333234588999955567788876554 4689999885 567


Q ss_pred             EEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCC
Q 021484          183 VRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~  222 (312)
                      +..+++|.+.|+.++|.|... .++|++.|..+-+||+...
T Consensus       280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            889999999999999999865 5999999999999998754

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.82  E-value=5.9e-19  Score=147.80  Aligned_cols=244  Identities=13%  Similarity=0.146  Sum_probs=159.9

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCC---------C
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS---------S   71 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~   71 (312)
                      +++||+........-.         +-||...|.+++|.|.++..|++|+.||.|.|||++-..+....+         .
T Consensus       124 ~r~Wdvk~s~l~G~~~---------~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n  194 (720)
T KOG0321|consen  124 IRPWDVKTSRLVGGRL---------NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHN  194 (720)
T ss_pred             eeeeeeccceeeccee---------ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcccc
Confidence            5789988776544421         135899999999999999999999999999999998443111000         0


Q ss_pred             C--CCcccccc-cccccCCCccEEE---EEEccCCCeEEEe-c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCc--eE
Q 021484           72 D--TPVDTFCP-RHLIGKNNIHITG---LAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ--VY  141 (312)
Q Consensus        72 ~--~~~~~~~~-~~~~~~~~~~i~~---~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~  141 (312)
                      .  .+...... ..-...+...|.+   +.+..|...||++ . |+.|+|||++.......+          +...  .+
T Consensus       195 ~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~----------ep~~~~~~  264 (720)
T KOG0321|consen  195 TAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ----------EPRGSDKY  264 (720)
T ss_pred             CCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc----------CCCcccCc
Confidence            0  11110000 0001234444554   5556677777774 4 999999999876311110          1111  11


Q ss_pred             ecccC-CceeeEEEEecCCCCEEEEeccCceEEEEeccCC--eeEEEeecCcc-ce-EEEEEcCCCCeEEEEeCCCcEEE
Q 021484          142 SGHRN-SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KLVRLMVGDRH-VV-NQLEPHPHIPMFATCGIEKTVKL  216 (312)
Q Consensus       142 ~~~~~-~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~-~v-~~~~~~p~~~~l~t~~~d~~i~i  216 (312)
                      ..+.. ...+.++.. +..|.+|++.+.|+.|++|++.+-  .++..+.++.. .. ..-..+|++.++++|+.|....+
T Consensus       265 ~t~skrs~G~~nL~l-DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayi  343 (720)
T KOG0321|consen  265 PTHSKRSVGQVNLIL-DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYI  343 (720)
T ss_pred             cCcccceeeeEEEEe-cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceee
Confidence            12210 111566665 677899888888999999998753  23444443321 11 12346899999999999999999


Q ss_pred             ccCCCCCC--CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          217 WAPMPTDF--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       217 wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      |.+...+.  ..+.+|...+....|.+.+-.-+++++.|..+++|++...
T Consensus       344 w~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  344 WVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            99988763  5567888888777766667777888899999999998554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.82  E-value=8.2e-19  Score=139.18  Aligned_cols=207  Identities=14%  Similarity=0.095  Sum_probs=149.8

Q ss_pred             ccccCCCccEEEEEEccCCC-eEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           82 HLIGKNNIHITGLAYSNTSE-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        82 ~~~~~~~~~i~~~~~~~~~~-~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      .+..+|.++|..++|+|... .||+|+ |.+|.||.+..+.......         +++..+.+|...  |.-+.|+...
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------epvv~L~gH~rr--Vg~V~wHPtA  143 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------EPVVELYGHQRR--VGLVQWHPTA  143 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc---------cceEEEeeccee--EEEEeecccc
Confidence            33489999999999999764 788875 9999999997652111111         567888999965  9999996556


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN  238 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~  238 (312)
                      .+.|++++.|.+|.+|++.+|+.+.++. |...|+++.|+.+|.+|+|.+.|+.|||||.+++++ ..-.+|...-...+
T Consensus       144 ~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra  222 (472)
T KOG0303|consen  144 PNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA  222 (472)
T ss_pred             hhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence            7899999999999999999999988888 999999999999999999999999999999999985 22345555444444


Q ss_pred             ccCCCCceeEEec---CCceEEEEEecccCcccee-Ee-ecCCCccC-CCCCCCeEEEeecCCCCCCC
Q 021484          239 KQGREDHSRITLT---PDVIMHVLRLQRRQTLAYR-ER-RYNAADFE-SDEEEGETYLLGFSDSDASS  300 (312)
Q Consensus       239 ~~~~~~~~l~s~~---~d~~i~i~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~v~~~~~~~~~~~~  300 (312)
                      .+-.++.++.||-   .+.++-+|+-..-+.+.-. +. ..++.-++ .+++...||+++=-|++...
T Consensus       223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRY  290 (472)
T KOG0303|consen  223 IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRY  290 (472)
T ss_pred             EEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEE
Confidence            4555556444433   3577888875554433222 11 11222222 35666777888766665443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=2e-19  Score=149.62  Aligned_cols=228  Identities=15%  Similarity=0.223  Sum_probs=166.8

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc---------------------------
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC---------------------------   79 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------------------------   79 (312)
                      .||.+.|.+++.+|.| ..|++|+.||+|+||.+.++.++.....+..++...                           
T Consensus       397 rGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~  475 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD  475 (733)
T ss_pred             eccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence            5899999999999988 899999999999999999998875443222111000                           


Q ss_pred             ----------------------------cc---------ccccCCCccEEEEEEccCCCeEEEec----CCcEEEEEcCC
Q 021484           80 ----------------------------PR---------HLIGKNNIHITGLAYSNTSELLISYN----DELVYLFEKNM  118 (312)
Q Consensus        80 ----------------------------~~---------~~~~~~~~~i~~~~~~~~~~~l~s~~----d~~i~iwd~~~  118 (312)
                                                  ..         .+...|...|..+.|+..|.||++..    ...|.|+++..
T Consensus       476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK  555 (733)
T KOG0650|consen  476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK  555 (733)
T ss_pred             hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence                                        00         11234677899999999999999842    45689999876


Q ss_pred             CcCCCCC-------------------------cCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEE
Q 021484          119 GLGPSPL-------------------------SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF  173 (312)
Q Consensus       119 ~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~  173 (312)
                      .....+.                         .+.+.++.++.+++.+....  ..|..++. +|.|.-|+.|+.|+.+.
T Consensus       556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~--kwiS~msi-hp~GDnli~gs~d~k~~  632 (733)
T KOG0650|consen  556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGS--KWISSMSI-HPNGDNLILGSYDKKMC  632 (733)
T ss_pred             ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCC--eeeeeeee-cCCCCeEEEecCCCeeE
Confidence            5522111                         11222233333333333222  45889998 89999999999999999


Q ss_pred             EEeccC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC-------CCC---CCCCCCChhh----hhhhh
Q 021484          174 IWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-------PTD---FPPLPDNAEK----IMKAN  238 (312)
Q Consensus       174 iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~-------~~~---~~~~~~~~~~----~~~~~  238 (312)
                      .+|+.- .++.++++.|...+++|+||+.-++|++|+.||++.|+--.       ...   +..+++|...    ++.. 
T Consensus       633 WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~-  711 (733)
T KOG0650|consen  633 WFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT-  711 (733)
T ss_pred             EEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee-
Confidence            999874 46788889999999999999999999999999999998522       222   2455666544    4443 


Q ss_pred             ccCCCCceeEEecCCceEEEE
Q 021484          239 KQGREDHSRITLTPDVIMHVL  259 (312)
Q Consensus       239 ~~~~~~~~l~s~~~d~~i~i~  259 (312)
                      .|++...+|++++.|+.+++|
T Consensus       712 ~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  712 IWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cccCCCceEEecCCCceEEee
Confidence            478889999999999999998

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.4e-19  Score=160.61  Aligned_cols=210  Identities=16%  Similarity=0.168  Sum_probs=160.3

Q ss_pred             cceEEEEEcCCCCc---EEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe
Q 021484           31 IRLNAIVIDPRNPN---YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY  106 (312)
Q Consensus        31 ~~v~~~~~~p~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~  106 (312)
                      .+-+.++|.+.+..   +|+.|..||.|-+||...-.-    .     ..+........|.+.|..+.|++... +||+|
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~----~-----~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG  135 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA----N-----ASEEVLATKSKHTGPVLGLDFNPFQGNLLASG  135 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhcc----C-----cchHHHhhhcccCCceeeeeccccCCceeecc
Confidence            46789999987754   589999999999999875310    0     00011112278999999999999876 89997


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                       +||.|.|||+.+.                +....+........|.+++|.......|++++.+|.+.|||++..+++..
T Consensus       136 a~~geI~iWDlnn~----------------~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~  199 (1049)
T KOG0307|consen  136 ADDGEILIWDLNKP----------------ETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK  199 (1049)
T ss_pred             CCCCcEEEeccCCc----------------CCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc
Confidence             5999999999875                22222222212234999999544577889999999999999998888877


Q ss_pred             eecCcc--ceEEEEEcCCCCe-EEEEeCC---CcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEE
Q 021484          186 MVGDRH--VVNQLEPHPHIPM-FATCGIE---KTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH  257 (312)
Q Consensus       186 ~~~~~~--~v~~~~~~p~~~~-l~t~~~d---~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  257 (312)
                      +..+..  .+..++|||+... +++++.|   -.|.+||++--.  ++.+.+|...++...|...|.+++++.+.|+.+.
T Consensus       200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii  279 (1049)
T KOG0307|consen  200 LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII  279 (1049)
T ss_pred             cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCee
Confidence            765543  5789999999865 6666654   369999988654  5677889999999987777889999999999999


Q ss_pred             EEEecccC
Q 021484          258 VLRLQRRQ  265 (312)
Q Consensus       258 i~~~~~~~  265 (312)
                      .|+.++.+
T Consensus       280 ~wN~~tgE  287 (1049)
T KOG0307|consen  280 CWNPNTGE  287 (1049)
T ss_pred             EecCCCce
Confidence            99987743

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.81  E-value=1.2e-17  Score=144.08  Aligned_cols=141  Identities=12%  Similarity=0.149  Sum_probs=112.0

Q ss_pred             eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-
Q 021484          149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-  224 (312)
Q Consensus       149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-  224 (312)
                      .+++++. ++.|++.+.|...|.|-+|++.+|-....+   +.|.++|++++....++.+++++.+|.+++||.....+ 
T Consensus       450 ~~~av~v-s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  450 NATAVCV-SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             ceEEEEE-eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            4888988 999999999999999999999999888777   58999999999999999999999999999999764321 


Q ss_pred             -----------------------------------------CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          225 -----------------------------------------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       225 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                                                               ..+.+|.+.+ ....++++++++++.+.|++|++||+.+
T Consensus       529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nri-td~~FS~DgrWlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRI-TDMTFSPDGRWLISASMDSTIRTWDLPT  607 (910)
T ss_pred             eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccce-eeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence                                                     1222455555 3344788999999999999999999987


Q ss_pred             cCcc---------ceeEeecCCCccCC-CCCCCeEEEe
Q 021484          264 RQTL---------AYRERRYNAADFES-DEEEGETYLL  291 (312)
Q Consensus       264 ~~~~---------~~~~~~~~~~~~~~-~~~~~~v~~~  291 (312)
                      ....         ....++|++..++. |.+...+|.|
T Consensus       608 ~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  608 GTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             cceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence            6432         33477888888765 3444556665

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.81  E-value=9e-18  Score=138.62  Aligned_cols=198  Identities=8%  Similarity=0.056  Sum_probs=134.6

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-C-Cc
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D-EL  110 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d-~~  110 (312)
                      +..++|+|++..+++++..++.+++||+.+.+.+..              + . +...+..++|+|++++++++. + ..
T Consensus        75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~--------------~-~-~~~~~~~~~~~~dg~~l~~~~~~~~~  138 (300)
T TIGR03866        75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE--------------I-P-VGVEPEGMAVSPDGKIVVNTSETTNM  138 (300)
T ss_pred             ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE--------------e-e-CCCCcceEEECCCCCEEEEEecCCCe
Confidence            467899999843445556789999999987653211              1 1 123357899999999888764 4 45


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe-ccCceEEEEeccCCeeEEEeecC
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVRLMVGD  189 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~  189 (312)
                      +.+||..++                +....... ...  ...++| ++++++|+++ ..++.|++||+.+++.+..+..+
T Consensus       139 ~~~~d~~~~----------------~~~~~~~~-~~~--~~~~~~-s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~  198 (300)
T TIGR03866       139 AHFIDTKTY----------------EIVDNVLV-DQR--PRFAEF-TADGKELWVSSEIGGTVSVIDVATRKVIKKITFE  198 (300)
T ss_pred             EEEEeCCCC----------------eEEEEEEc-CCC--ccEEEE-CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence            778898765                33333222 222  567888 8999988554 56999999999998877766422


Q ss_pred             c-----c--ceEEEEEcCCCCeEE-EEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEe-cCCceEEEEE
Q 021484          190 R-----H--VVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITL-TPDVIMHVLR  260 (312)
Q Consensus       190 ~-----~--~v~~~~~~p~~~~l~-t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~i~~  260 (312)
                      .     .  ....++|+|++++++ +.+.++.|.+||+++++......+...+ ....+++++.+++++ ..++.|++||
T Consensus       199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~i~v~d  277 (300)
T TIGR03866       199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRV-WQLAFTPDEKYLLTTNGVSNDVSVID  277 (300)
T ss_pred             ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCc-ceEEECCCCCEEEEEcCCCCeEEEEE
Confidence            1     1  234688999999854 4456778999999877653221122223 344577888888775 5689999999


Q ss_pred             ecccCcc
Q 021484          261 LQRRQTL  267 (312)
Q Consensus       261 ~~~~~~~  267 (312)
                      +......
T Consensus       278 ~~~~~~~  284 (300)
T TIGR03866       278 VAALKVI  284 (300)
T ss_pred             CCCCcEE
Confidence            8876543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.81  E-value=1.5e-18  Score=146.57  Aligned_cols=222  Identities=15%  Similarity=0.182  Sum_probs=165.9

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      +||.+.|++++|+|.| .+|++.+.|.+-|+|-.-..+.        .   +.......-|...++|+++-+....++++
T Consensus       358 SGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~--------~---wHEiaRPQiHGyDl~c~~~vn~~~~FVSg  425 (764)
T KOG1063|consen  358 SGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQ--------E---WHEIARPQIHGYDLTCLSFVNEDLQFVSG  425 (764)
T ss_pred             ccccccceeeeecCCC-CEEEEeccccceeeeccccccc--------c---eeeecccccccccceeeehccCCceeeec
Confidence            6899999999999999 7999999999999987652220        0   11111225578889999999866677776


Q ss_pred             -cCCcEEEEEcCCCc--------C---------C-----------CCCcCCc------c---------------------
Q 021484          107 -NDELVYLFEKNMGL--------G---------P-----------SPLSLSP------E---------------------  130 (312)
Q Consensus       107 -~d~~i~iwd~~~~~--------~---------~-----------~~~~~~~------~---------------------  130 (312)
                       .+..+|+|+.....        +         +           +.-.++.      .                     
T Consensus       426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~  505 (764)
T KOG1063|consen  426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT  505 (764)
T ss_pred             ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence             57788999976332        0         0           0000000      0                     


Q ss_pred             -c----ccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-----CceEEEEeccCCeeEEEeecCccceEEEEEcC
Q 021484          131 -D----LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-----CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP  200 (312)
Q Consensus       131 -~----~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p  200 (312)
                       +    ..-...++.+.||...  |.+++. +|+++++++++.     ...|++|+..+-..+..+.+|.-.|+.++|||
T Consensus       506 EdqLq~~tLwPEv~KLYGHGyE--v~~l~~-s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp  582 (764)
T KOG1063|consen  506 EDQLQQNTLWPEVHKLYGHGYE--VYALAI-SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP  582 (764)
T ss_pred             HHHHHHhccchhhHHhccCcee--EEEEEe-cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence             0    1112334556688866  999998 999999999875     34699999998888889999999999999999


Q ss_pred             CCCeEEEEeCCCcEEEccCCCCCC-----CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          201 HIPMFATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       201 ~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ++++|++.+.|+++.+|.......     .....|..-+..+. |++++.+++|++.|..+++|.....
T Consensus       583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs-W~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS-WSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc-cCcccceeEEecCCceEEEEeccCc
Confidence            999999999999999999754432     22445666666555 7888888999999999999987654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=5.9e-19  Score=136.24  Aligned_cols=233  Identities=7%  Similarity=0.066  Sum_probs=161.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc-
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC-   79 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-   79 (312)
                      |-+||+.+.+..+++.           +|..+|++++||++| +.|+|++.|..|.+||+..+.+...+..+.|+.... 
T Consensus        47 vvI~D~~T~~iar~ls-----------aH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~  114 (405)
T KOG1273|consen   47 VVIYDFDTFRIARMLS-----------AHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQW  114 (405)
T ss_pred             EEEEEccccchhhhhh-----------ccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCceeEEEccCccceeee
Confidence            3467776665444444           488899999999999 899999999999999999998777666655542211 


Q ss_pred             --------ccccccC----------------------CCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCC
Q 021484           80 --------PRHLIGK----------------------NNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLS  128 (312)
Q Consensus        80 --------~~~~~~~----------------------~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~  128 (312)
                              ...++..                      -........|.+.|+++.+| +.|.+.+++..+-         
T Consensus       115 hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~---------  185 (405)
T KOG1273|consen  115 HPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL---------  185 (405)
T ss_pred             ccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh---------
Confidence                    0000000                      00111122367778899998 6999999999886         


Q ss_pred             cccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC-------Cee--EEEee--cCccceEEEE
Q 021484          129 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-------GKL--VRLMV--GDRHVVNQLE  197 (312)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~-------~~~--~~~~~--~~~~~v~~~~  197 (312)
                             +++..++-... ..|.++-+ +..|++|+.-+.|+.|+.|+++.       +++  .+.++  ...-.-.+++
T Consensus       186 -------e~vas~rits~-~~IK~I~~-s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc  256 (405)
T KOG1273|consen  186 -------ECVASFRITSV-QAIKQIIV-SRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC  256 (405)
T ss_pred             -------eeeeeeeechh-eeeeEEEE-eccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence                   67777765541 23889998 89999999999999999999762       111  11111  0122345788


Q ss_pred             EcCCCCeEEEEe-CCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          198 PHPHIPMFATCG-IEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       198 ~~p~~~~l~t~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      |+.+|.|+++++ ....++||.-..+.+ +.+.+.....+....|++-...+++. ..|.++||.....
T Consensus       257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             ecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence            999999977766 556899999998886 44555554444444567766666666 7899999986543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.80  E-value=1e-17  Score=135.32  Aligned_cols=205  Identities=13%  Similarity=0.071  Sum_probs=147.6

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      +|..+|.++.|+|.+...+++.+.||+|++-|++......            +... ......+.++.|+.+...++.+ 
T Consensus       232 ~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~------------v~s~-~~d~~~fs~~d~~~e~~~vl~~~  298 (498)
T KOG4328|consen  232 PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE------------VLSL-DTDNIWFSSLDFSAESRSVLFGD  298 (498)
T ss_pred             cCCccccceEecCCChhheeeeccCceeeeeeecchhhHH------------Hhhc-CccceeeeeccccCCCccEEEee
Confidence            3899999999999888999999999999999998765210            0111 2234556778888877655554 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEeccCCe----
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGK----  181 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd~~~~~----  181 (312)
                      .-|.+.+||++++.               .....+.-|...  |+++++ +| ...+|++++.|++++|||++.-.    
T Consensus       299 ~~G~f~~iD~R~~~---------------s~~~~~~lh~kK--I~sv~~-NP~~p~~laT~s~D~T~kIWD~R~l~~K~s  360 (498)
T KOG4328|consen  299 NVGNFNVIDLRTDG---------------SEYENLRLHKKK--ITSVAL-NPVCPWFLATASLDQTAKIWDLRQLRGKAS  360 (498)
T ss_pred             cccceEEEEeecCC---------------ccchhhhhhhcc--cceeec-CCCCchheeecccCcceeeeehhhhcCCCC
Confidence            56699999999862               234445556644  999999 55 46678999999999999987532    


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC----CCCCCCCCCCh----h--hhhhhhccCCCCceeEEec
Q 021484          182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM----PTDFPPLPDNA----E--KIMKANKQGREDHSRITLT  251 (312)
Q Consensus       182 ~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~----~~~~~~~~~~~----~--~~~~~~~~~~~~~~l~s~~  251 (312)
                      ++.....|...|.++.|||.+..|+|.+.|..|+|||..    ..+......|.    .  ..++ +.|.++..+++.+.
T Consensus       361 p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fK-A~W~P~~~li~vg~  439 (498)
T KOG4328|consen  361 PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFK-AAWDPDYNLIVVGR  439 (498)
T ss_pred             cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchh-heeCCCccEEEEec
Confidence            223334699999999999999889999999999999973    22221111121    1  1123 34777888888888


Q ss_pred             CCceEEEEEeccc
Q 021484          252 PDVIMHVLRLQRR  264 (312)
Q Consensus       252 ~d~~i~i~~~~~~  264 (312)
                      .-..|-+++-..+
T Consensus       440 ~~r~IDv~~~~~~  452 (498)
T KOG4328|consen  440 YPRPIDVFDGNGG  452 (498)
T ss_pred             cCcceeEEcCCCC
Confidence            8888888875443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.80  E-value=2.3e-17  Score=128.18  Aligned_cols=239  Identities=13%  Similarity=0.217  Sum_probs=170.2

Q ss_pred             CCccceEEEEEcC----CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC---
Q 021484           28 MNSIRLNAIVIDP----RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---  100 (312)
Q Consensus        28 ~h~~~v~~~~~~p----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---  100 (312)
                      +|..+|..++|++    +.+..+++++. ..+.+|.....-.+         +.+ ....-..|.+....++|+-+.   
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~i---------r~l-q~y~D~d~~Esfytcsw~yd~~~~  104 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGI---------RLL-QSYADEDHDESFYTCSWSYDSNTG  104 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccce---------eee-eeccCCCCCcceEEEEEEecCCCC
Confidence            3788999999985    44467777765 56888887643211         111 111112466777788887643   


Q ss_pred             C-eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc
Q 021484          101 E-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK  178 (312)
Q Consensus       101 ~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~  178 (312)
                      . ++|.+ .-|.|+|.|+.++                +....+.+|...  |..+.+++...+++++++.|..|++|+++
T Consensus       105 ~p~la~~G~~GvIrVid~~~~----------------~~~~~~~ghG~s--INeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSG----------------QCSKNYRGHGGS--INEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CeeEEeecceeEEEEEecchh----------------hhccceeccCcc--chhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            3 66665 5999999999988                788999999977  99999954456899999999999999999


Q ss_pred             CCeeEEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-------CC---------CC-----------
Q 021484          179 GGKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-------PP---------LP-----------  228 (312)
Q Consensus       179 ~~~~~~~~---~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-------~~---------~~-----------  228 (312)
                      +..++..+   .+|...|.++.|+++|.++++++.|.+|++|++...+.       .+         ++           
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst  246 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST  246 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence            99998887   47999999999999999999999999999999883221       00         11           


Q ss_pred             --CChhhhhhhhccCCCCceeEEecCCceEEEEEecc-cCc----------------------ccee---EeecCCCccC
Q 021484          229 --DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR-RQT----------------------LAYR---ERRYNAADFE  280 (312)
Q Consensus       229 --~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~-~~~----------------------~~~~---~~~~~~~~~~  280 (312)
                        .|.+.+ .++.|-  ++++++-+-++.|..|.... .+.                      .+|.   .+.+....++
T Consensus       247 ~diHrnyV-DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la  323 (385)
T KOG1034|consen  247 TDIHRNYV-DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA  323 (385)
T ss_pred             cccccchH-HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence              011111 111111  46888888888999997511 100                      0111   3445556677


Q ss_pred             CCCCCCeEEEeecCCCCC
Q 021484          281 SDEEEGETYLLGFSDSDA  298 (312)
Q Consensus       281 ~~~~~~~v~~~~~~~~~~  298 (312)
                      .+.+.|.||++|++..+.
T Consensus       324 ~gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  324 LGNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             hccCCCcEEEEECCCCCC
Confidence            888999999999977654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=4e-18  Score=132.11  Aligned_cols=205  Identities=14%  Similarity=0.142  Sum_probs=152.9

Q ss_pred             ccceEEEEEc-------CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCC---ccEEEEEEccC
Q 021484           30 SIRLNAIVID-------PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN---IHITGLAYSNT   99 (312)
Q Consensus        30 ~~~v~~~~~~-------p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~   99 (312)
                      ...|+..+|-       |+. +++|+.+.+.-|++||.-++++......             ..|.   ....+++|+||
T Consensus       104 g~tvydy~wYs~M~s~qP~t-~l~a~ssr~~PIh~wdaftG~lraSy~~-------------ydh~de~taAhsL~Fs~D  169 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPST-NLFAVSSRDQPIHLWDAFTGKLRASYRA-------------YDHQDEYTAAHSLQFSPD  169 (406)
T ss_pred             CCEEEEEEeeeccccCCCcc-ceeeeccccCceeeeeccccccccchhh-------------hhhHHhhhhheeEEecCC
Confidence            4467777775       555 7999999999999999999986432211             1222   23568999999


Q ss_pred             CCeEEEecCCcEEEEEc-CCCcCCCCCcCCcccccCCCCCceE----ecccCCceeeEEEEecCC-CCEEEEeccCceEE
Q 021484          100 SELLISYNDELVYLFEK-NMGLGPSPLSLSPEDLQKREEPQVY----SGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLF  173 (312)
Q Consensus       100 ~~~l~s~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~  173 (312)
                      |.+|.++-...|++||+ +.+.. .            ....++    .+..  ..+.+++| +|. ...++.|+....+-
T Consensus       170 GeqlfaGykrcirvFdt~RpGr~-c------------~vy~t~~~~k~gq~--giisc~a~-sP~~~~~~a~gsY~q~~g  233 (406)
T KOG2919|consen  170 GEQLFAGYKRCIRVFDTSRPGRD-C------------PVYTTVTKGKFGQK--GIISCFAF-SPMDSKTLAVGSYGQRVG  233 (406)
T ss_pred             CCeEeecccceEEEeeccCCCCC-C------------cchhhhhccccccc--ceeeeeec-cCCCCcceeeecccceee
Confidence            99999999999999999 44410 0            000111    1122  34889999 665 55899999999999


Q ss_pred             EEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCC--CCCCCCChhhhhhhhc--cCCCCceeE
Q 021484          174 IWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD--FPPLPDNAEKIMKANK--QGREDHSRI  248 (312)
Q Consensus       174 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~l~  248 (312)
                      |+.-..+.++..+-+|.+.|+.+.|+++|+.|.+|. .|-.|-.||++...  +..+..|....-....  ..+.+++|+
T Consensus       234 iy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~La  313 (406)
T KOG2919|consen  234 IYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILA  313 (406)
T ss_pred             eEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceee
Confidence            999888999999999999999999999999999988 68899999998654  3444444442222222  345789999


Q ss_pred             EecCCceEEEEEeccc
Q 021484          249 TLTPDVIMHVLRLQRR  264 (312)
Q Consensus       249 s~~~d~~i~i~~~~~~  264 (312)
                      +|+.+|.|++||++..
T Consensus       314 sG~tdG~V~vwdlk~~  329 (406)
T KOG2919|consen  314 SGDTDGSVRVWDLKDL  329 (406)
T ss_pred             ccCCCccEEEEecCCC
Confidence            9999999999999874

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.6e-18  Score=140.01  Aligned_cols=218  Identities=13%  Similarity=0.204  Sum_probs=165.1

Q ss_pred             eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccc
Q 021484            2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR   81 (312)
Q Consensus         2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.||+.+.+..++-.....+        ...+..+..+|++ ++|+..+..|.|.+.-..+++++..         +   
T Consensus       283 ysyDle~ak~~k~~~~~g~e--------~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s---------~---  341 (514)
T KOG2055|consen  283 YSYDLETAKVTKLKPPYGVE--------EKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITS---------F---  341 (514)
T ss_pred             EEeeccccccccccCCCCcc--------cchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhhe---------e---
Confidence            57888776644443332111        2356678889998 7999999999999999998875422         1   


Q ss_pred             ccccCCCccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC
Q 021484           82 HLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND  160 (312)
Q Consensus        82 ~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~  160 (312)
                          .-.+.|..++|+.+++.|.+ +++|.|++||++..                .++..+..... -.-++++. ++++
T Consensus       342 ----KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~----------------~~~~rf~D~G~-v~gts~~~-S~ng  399 (514)
T KOG2055|consen  342 ----KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN----------------SCLHRFVDDGS-VHGTSLCI-SLNG  399 (514)
T ss_pred             ----eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc----------------ceEEEEeecCc-cceeeeee-cCCC
Confidence                12567899999999985554 67999999999987                67777764433 22466776 8999


Q ss_pred             CEEEEeccCceEEEEeccC------CeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEccCCCCCC-CCCCCCh
Q 021484          161 EYVMSGSDCGHLFIWKKKG------GKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTDF-PPLPDNA  231 (312)
Q Consensus       161 ~~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~--~d~~i~iwd~~~~~~-~~~~~~~  231 (312)
                      .|||+|+..|.|.|||.++      .+++..+..-...|++++|+|+.++||.+|  ....+|+-.+.+... ..++...
T Consensus       400 ~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n  479 (514)
T KOG2055|consen  400 SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN  479 (514)
T ss_pred             ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC
Confidence            9999999999999999653      466777766677899999999999988777  567899988877764 3444322


Q ss_pred             h--hhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          232 E--KIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       232 ~--~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      .  .-+.+..+++.+.+++.|..++.+.+|.+.
T Consensus       480 ~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  480 TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            2  224666788999999999999999999875

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.79  E-value=3.8e-17  Score=140.85  Aligned_cols=269  Identities=15%  Similarity=0.162  Sum_probs=178.0

Q ss_pred             CeeecccCc-cceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021484            1 MWQFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   79 (312)
Q Consensus         1 v~~wd~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~   79 (312)
                      +.+|+++.+ .+...+.+            +..|++++|+|..+++++.|+.+|.|.+||++.+...       + .. .
T Consensus       224 ~~vW~~~~p~~Pe~~~~~------------~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-------~-~s-~  282 (555)
T KOG1587|consen  224 LLVWSLKNPNTPELVLES------------PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-------P-PS-G  282 (555)
T ss_pred             EEEEecCCCCCceEEEec------------CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-------C-Cc-c
Confidence            368999877 23333333            4579999999999999999999999999999977621       0 11 2


Q ss_pred             ccccccCCCccEEEEEEccCCC--eEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe
Q 021484           80 PRHLIGKNNIHITGLAYSNTSE--LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  156 (312)
Q Consensus        80 ~~~~~~~~~~~i~~~~~~~~~~--~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  156 (312)
                      .......|..+++.+.|..+..  -+++ +.||.|..|+++.-..|....+.....   +....+. ..  ..+++++|.
T Consensus       283 ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~---~~~~~~~-~~--~~~t~~~F~  356 (555)
T KOG1587|consen  283 LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK---HKGQQSS-KA--VGATSLKFE  356 (555)
T ss_pred             cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc---ccccccc-cc--cceeeEeec
Confidence            2233367899999999987553  2555 579999999887653221111100000   0000011 11  228899995


Q ss_pred             cCCCCEEEEeccCceEEEEeccC---C-----eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC-CCC-CCC
Q 021484          157 GPNDEYVMSGSDCGHLFIWKKKG---G-----KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PTD-FPP  226 (312)
Q Consensus       157 s~~~~~l~~~~~dg~v~iwd~~~---~-----~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~-~~~-~~~  226 (312)
                      ..+...++.|+++|.|.--+...   +     +....+..|.++|+.+.++|-+..++..+.|.+++||.-. ... +..
T Consensus       357 ~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~  436 (555)
T KOG1587|consen  357 PTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS  436 (555)
T ss_pred             cCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchh
Confidence            55677899999999998744322   2     1233455688999999999998775444449999999976 333 333


Q ss_pred             CCCChhhhhhhhccCC-CCceeEEecCCceEEEEEecccCcc------------ceeEeecCCCccCCCCCCCeEEEeec
Q 021484          227 LPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTL------------AYRERRYNAADFESDEEEGETYLLGF  293 (312)
Q Consensus       227 ~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~v~~~~~  293 (312)
                      +..+...+ ....|++ ....++++..+|.+.+||+......            -..-+++.+..++.++..|.++++++
T Consensus       437 ~~~~~~~v-~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  437 LDSSPDYV-TDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             hhhcccee-eeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            43344444 4455666 5677888889999999998654211            11133445777888899999999988


Q ss_pred             CCCC
Q 021484          294 SDSD  297 (312)
Q Consensus       294 ~~~~  297 (312)
                      +++-
T Consensus       516 ~~~l  519 (555)
T KOG1587|consen  516 SESL  519 (555)
T ss_pred             Cchh
Confidence            6553

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1e-17  Score=135.43  Aligned_cols=202  Identities=10%  Similarity=0.156  Sum_probs=153.9

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-c
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-N  107 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~  107 (312)
                      .++|+++.|||.. .++++++.|+.++||.+....-       ..+++.      .-...+|.+.+|.|+|+ .++++ .
T Consensus       213 ~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~N-------~~lqS~------~l~~fPi~~a~f~p~G~~~i~~s~r  278 (514)
T KOG2055|consen  213 HGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKVN-------PKLQSI------HLEKFPIQKAEFAPNGHSVIFTSGR  278 (514)
T ss_pred             cCCceEEEecCCC-ceEEEecCCCcEEEEEecCccC-------hhheee------eeccCccceeeecCCCceEEEeccc
Confidence            4789999999988 6999999999999999975431       111111      22356899999999998 66665 5


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  187 (312)
                      ...++.||+.+.+              ...+....++.. ..+..... ++++++|+..+..|.|.+....+++.+..++
T Consensus       279 rky~ysyDle~ak--------------~~k~~~~~g~e~-~~~e~FeV-Shd~~fia~~G~~G~I~lLhakT~eli~s~K  342 (514)
T KOG2055|consen  279 RKYLYSYDLETAK--------------VTKLKPPYGVEE-KSMERFEV-SHDSNFIAIAGNNGHIHLLHAKTKELITSFK  342 (514)
T ss_pred             ceEEEEeeccccc--------------cccccCCCCccc-chhheeEe-cCCCCeEEEcccCceEEeehhhhhhhhheee
Confidence            8899999998761              112223333332 23566666 8999999999999999999999999998887


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       188 ~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                       -.+.|..++|+.+++.|++++.+|.|.+||++...+ ..+.....---...+.+.++.++++|+..|.+.|++.+
T Consensus       343 -ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  343 -IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             -eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence             457899999999999999999999999999998764 33332222222333456688899999999999999854

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.79  E-value=2.3e-18  Score=144.52  Aligned_cols=206  Identities=13%  Similarity=0.191  Sum_probs=153.3

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEEe-c
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-N  107 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~  107 (312)
                      ...|+++.|+|.....||+++.||.|++|.+..+.+...        ...+..++..|...|+++.|+|-. ..|+++ .
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~--------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy  698 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN--------EMTPEKILTIHGEKITSLRFHPLAADVLAVASY  698 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc--------cCCcceeeecccceEEEEEecchhhhHhhhhhc
Confidence            557999999998879999999999999999987653211        224555668999999999999965 477775 5


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-eEEEe
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLM  186 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~  186 (312)
                      |.+|++||+.+.                +....+.+|.+.  |.+++| +|+|+.+++.+.||+|++|..++++ ++..-
T Consensus       699 d~Ti~lWDl~~~----------------~~~~~l~gHtdq--If~~AW-SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg  759 (1012)
T KOG1445|consen  699 DSTIELWDLANA----------------KLYSRLVGHTDQ--IFGIAW-SPDGRRIATVCKDGTLRVYEPRSREQPVYEG  759 (1012)
T ss_pred             cceeeeeehhhh----------------hhhheeccCcCc--eeEEEE-CCCCcceeeeecCceEEEeCCCCCCCccccC
Confidence            999999999988                788889999987  999999 9999999999999999999988664 33332


Q ss_pred             ecCc-cceEEEEEcCCCCeEEEEeCC----CcEEEccCCCCCCCCCC-----CChhhhhhhhccCC-CCceeEEecCCce
Q 021484          187 VGDR-HVVNQLEPHPHIPMFATCGIE----KTVKLWAPMPTDFPPLP-----DNAEKIMKANKQGR-EDHSRITLTPDVI  255 (312)
Q Consensus       187 ~~~~-~~v~~~~~~p~~~~l~t~~~d----~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~l~s~~~d~~  255 (312)
                      ++.- .+-..+.|.-+|++++..+.|    +.|.+||.++-....+.     ......+.  .... .+.++++|-.|..
T Consensus       760 ~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP--~YD~Ds~~lfltGKGD~~  837 (1012)
T KOG1445|consen  760 KGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVP--HYDYDSNVLFLTGKGDRF  837 (1012)
T ss_pred             CCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccc--cccCCCceEEEecCCCce
Confidence            2211 223457788899998777755    57899997765432221     11111111  1222 3456778888999


Q ss_pred             EEEEEeccc
Q 021484          256 MHVLRLQRR  264 (312)
Q Consensus       256 i~i~~~~~~  264 (312)
                      +.++.+-..
T Consensus       838 v~~yEv~~e  846 (1012)
T KOG1445|consen  838 VNMYEVIYE  846 (1012)
T ss_pred             EEEEEecCC
Confidence            999987543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=3.6e-18  Score=141.24  Aligned_cols=218  Identities=11%  Similarity=0.187  Sum_probs=163.4

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-  107 (312)
                      |-..|++++|+|.. -.|++++.||+|++|++.... ......-.|+-+|      .+|.++|.|+++.++++.+.+++ 
T Consensus       293 ~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~-~s~~~~~epi~tf------raH~gPVl~v~v~~n~~~~ysgg~  364 (577)
T KOG0642|consen  293 HDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAK-KSAEKDVEPILTF------RAHEGPVLCVVVPSNGEHCYSGGI  364 (577)
T ss_pred             chhhhhhhhcCCCC-CeEEEeccccchhhhhhcccC-CccccceeeeEEE------ecccCceEEEEecCCceEEEeecc
Confidence            77889999999988 589999999999999994311 1111112233333      89999999999999999999975 


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE---
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR---  184 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~---  184 (312)
                      ||+|+.|++.....+.+.      .........+.||...  ++.+++ +.....|++++.||+++.|......+..   
T Consensus       365 Dg~I~~w~~p~n~dp~ds------~dp~vl~~~l~Ghtda--vw~l~~-s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~  435 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDS------YDPSVLSGTLLGHTDA--VWLLAL-SSTKDRLLSCSSDGTVRLWEPTEESPCTFGE  435 (577)
T ss_pred             CceeeeeccCCCCCcccc------cCcchhccceeccccc--eeeeee-cccccceeeecCCceEEeeccCCcCccccCC
Confidence            999999988643222111      1111355678899977  999999 8888899999999999999865332200   


Q ss_pred             -----------------------------------------Eeec-------CccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484          185 -----------------------------------------LMVG-------DRHVVNQLEPHPHIPMFATCGIEKTVKL  216 (312)
Q Consensus       185 -----------------------------------------~~~~-------~~~~v~~~~~~p~~~~l~t~~~d~~i~i  216 (312)
                                                               .+..       ....+..+.++|.+...+++..|+.|++
T Consensus       436 ~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~  515 (577)
T KOG0642|consen  436 PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRF  515 (577)
T ss_pred             ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceec
Confidence                                                     1100       0124667889999999999999999999


Q ss_pred             ccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          217 WAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       217 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      +|..++++ .....|...+ +...+.+++.+|++++.|+.+++|++...
T Consensus       516 ~dn~~~~~l~s~~a~~~sv-tslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  516 FDNKTGKILHSMVAHKDSV-TSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             ccccccccchheeecccee-cceeecCCCceEEeecCCceeehhhccch
Confidence            99999885 5555555555 55668889999999999999999987544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=4.8e-17  Score=126.01  Aligned_cols=233  Identities=10%  Similarity=0.104  Sum_probs=155.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc--cccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF--CPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      ..+.++|.|+-..+++......++++|.+...+-     ...+....  ....+...|...+..+-...++++|+++ .|
T Consensus       134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d-----G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d  208 (420)
T KOG2096|consen  134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD-----GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD  208 (420)
T ss_pred             CceEEEECCCcceEEEEEccCCEEEEEEeeeccc-----CCCCcccccccccccchhcccceEEEeecCCceEEEEecCC
Confidence            4678899999867777777888999999875441     11111111  1112335567777777777778899997 59


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc---CC-----
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---GG-----  180 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~---~~-----  180 (312)
                      ..|.+|++..                 +.+..+......  -...+. +|+|+++++++..-.|++|.+-   .|     
T Consensus       209 t~i~lw~lkG-----------------q~L~~idtnq~~--n~~aav-SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev  268 (420)
T KOG2096|consen  209 TKICLWDLKG-----------------QLLQSIDTNQSS--NYDAAV-SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEV  268 (420)
T ss_pred             CcEEEEecCC-----------------ceeeeecccccc--ccceee-CCCCcEEEEecCCCCceEEEEEeccCcchhhh
Confidence            9999999984                 466666555433  455666 9999999999999999999853   22     


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC-----CCCCCC-------CChhhhhhhhccCCCCceeE
Q 021484          181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-----DFPPLP-------DNAEKIMKANKQGREDHSRI  248 (312)
Q Consensus       181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~~l~  248 (312)
                      +.+..+++|...|..++|+|+...++|.+.||++||||+.-.     ....+.       ......+ ....+|++. .+
T Consensus       269 ~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~-~l  346 (420)
T KOG2096|consen  269 KRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGD-SL  346 (420)
T ss_pred             hhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCc-EE
Confidence            345678899999999999999999999999999999997532     121111       1111111 222344444 44


Q ss_pred             EecCCceEEEEEecccCc-----------cceeEeecCCCccCCCCCCCeEEEee
Q 021484          249 TLTPDVIMHVLRLQRRQT-----------LAYRERRYNAADFESDEEEGETYLLG  292 (312)
Q Consensus       249 s~~~d~~i~i~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~  292 (312)
                      +.+....++++....++.           +..+.+.+++..+++..+. .+.++.
T Consensus       347 A~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr-~vrv~~  400 (420)
T KOG2096|consen  347 AVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR-YVRVIR  400 (420)
T ss_pred             EeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce-eeeeec
Confidence            556677788887655432           2233566666666665443 344444

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.78  E-value=7.2e-18  Score=137.64  Aligned_cols=199  Identities=12%  Similarity=0.193  Sum_probs=155.0

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-CCcEE
Q 021484           34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVY  112 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~  112 (312)
                      .|++..... .++++|+..+.|+|||++.+.              +.+ .+.+|...|+++.++-...+||+.+ .|.|.
T Consensus        83 ~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl--------------~hr-~lkdh~stvt~v~YN~~DeyiAsvs~gGdii  146 (673)
T KOG4378|consen   83 FCVACASQS-LYEISGGQSGCVKIWDLRAKL--------------IHR-FLKDHQSTVTYVDYNNTDEYIASVSDGGDII  146 (673)
T ss_pred             HHHhhhhcc-eeeeccCcCceeeehhhHHHH--------------Hhh-hccCCcceeEEEEecCCcceeEEeccCCcEE
Confidence            345544554 689999999999999999553              223 3389999999999999999999975 88999


Q ss_pred             EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCE-EEEeccCceEEEEeccCCeeEEEe-ecCc
Q 021484          113 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVRLM-VGDR  190 (312)
Q Consensus       113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~-~~~~  190 (312)
                      |..+.++                .....|... ....|.-+.| ++..+. |.+++.+|.|.+||+....++..+ ..|.
T Consensus       147 ih~~~t~----------------~~tt~f~~~-sgqsvRll~y-s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs  208 (673)
T KOG4378|consen  147 IHGTKTK----------------QKTTTFTID-SGQSVRLLRY-SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS  208 (673)
T ss_pred             EEecccC----------------ccccceecC-CCCeEEEeec-ccccceeeEeeccCCeEEEEeccCCCcccchhhhcc
Confidence            9999887                444455433 2234778999 777665 568899999999999887777665 5799


Q ss_pred             cceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021484          191 HVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       191 ~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      .+...++|+|.... |++.+.|+.|.+||.+.+......... ..+....+..++.+|++|+..|.+..+|++....+
T Consensus       209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS-HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             CCcCcceecCCccceEEEecccceEEEeecccccccceeeec-CCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence            99999999997764 899999999999999987643222122 23355568889999999999999999999876444

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.78  E-value=7.6e-18  Score=141.45  Aligned_cols=197  Identities=16%  Similarity=0.166  Sum_probs=142.7

Q ss_pred             cEEEE--EeCCCeEEEEEccCC-eecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEE-ecCCcEEEEEcCC
Q 021484           44 NYFAV--GGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNM  118 (312)
Q Consensus        44 ~~l~~--~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~  118 (312)
                      ..+|+  .+.-|.|-||+++.- ++-         .. ....+  -....|+.+.|.|-. +.|+. +.||.|++|.+..
T Consensus       592 ~rvAVPL~g~gG~iai~el~~PGrLP---------Dg-v~p~l--~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a  659 (1012)
T KOG1445|consen  592 KRVAVPLAGSGGVIAIYELNEPGRLP---------DG-VMPGL--FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTA  659 (1012)
T ss_pred             ceEEEEecCCCceEEEEEcCCCCCCC---------cc-ccccc--ccCceeeecccCCCChHHeeecccCceEEEEEecc
Confidence            34444  456799999999743 210         00 11111  125679999999955 56666 5799999999987


Q ss_pred             CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEE
Q 021484          119 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP  198 (312)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~  198 (312)
                      +..+...         ..+...+..|...  |+++.|+......|++++.|-+|++||+++++....+.+|++.|.+++|
T Consensus       660 ~gl~e~~---------~tPe~~lt~h~eK--I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AW  728 (1012)
T KOG1445|consen  660 NGLPENE---------MTPEKILTIHGEK--ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAW  728 (1012)
T ss_pred             CCCCccc---------CCcceeeecccce--EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEE
Confidence            6433221         1455678888865  9999996667889999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEeCCCcEEEccCCCCCCC--CCCCChhhhhhhhccCCCCceeEEecCC----ceEEEEEecc
Q 021484          199 HPHIPMFATCGIEKTVKLWAPMPTDFP--PLPDNAEKIMKANKQGREDHSRITLTPD----VIMHVLRLQR  263 (312)
Q Consensus       199 ~p~~~~l~t~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d----~~i~i~~~~~  263 (312)
                      +|+|+.+|+.+.||+|++|+.++.+..  .-.+....--....|..++++++..+.|    ..+.+++.+.
T Consensus       729 SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  729 SPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             CCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence            999999999999999999999987632  2222222222233456677887776665    4566776544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.78  E-value=1e-16  Score=131.25  Aligned_cols=233  Identities=14%  Similarity=0.230  Sum_probs=166.9

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  109 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  109 (312)
                      ...|....|+|.+++++++.+. +.+.+|+++.+.+.+.      ...|     .......|.+++|.++|..+..-++|
T Consensus       200 ne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~------~~~f-----ek~ekk~Vl~v~F~engdviTgDS~G  267 (626)
T KOG2106|consen  200 NEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKR------QGIF-----EKREKKFVLCVTFLENGDVITGDSGG  267 (626)
T ss_pred             cceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEE------eecc-----ccccceEEEEEEEcCCCCEEeecCCc
Confidence            3468899999999778877765 8999999987764321      0111     12223679999999999876666899


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee-------
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-------  182 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-------  182 (312)
                      .|.||+..+.                +..+....|...  |.+++. -.+|.+| +|+.|..|..||-.-.+.       
T Consensus       268 ~i~Iw~~~~~----------------~~~k~~~aH~gg--v~~L~~-lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe  327 (626)
T KOG2106|consen  268 NILIWSKGTN----------------RISKQVHAHDGG--VFSLCM-LRDGTLL-SGGKDRKIILWDDNYRKLRETELPE  327 (626)
T ss_pred             eEEEEeCCCc----------------eEEeEeeecCCc--eEEEEE-ecCccEe-ecCccceEEeccccccccccccCch
Confidence            9999999776                555656688876  999998 6677655 599999999999321100       


Q ss_pred             ----E-----------------------------EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCC
Q 021484          183 ----V-----------------------------RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD  229 (312)
Q Consensus       183 ----~-----------------------------~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~  229 (312)
                          +                             ....+|......++.+|+...++|++.|+.+++|+-..-+....  
T Consensus       328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~--  405 (626)
T KOG2106|consen  328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKI--  405 (626)
T ss_pred             hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEE--
Confidence                0                             03346777788899999999999999999999999221111111  


Q ss_pred             ChhhhhhhhccCCCCceeEEecCCceEEEEEeccc---------CccceeEeecCCCccCCCCCCCeEEEeecCCCCC
Q 021484          230 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR---------QTLAYRERRYNAADFESDEEEGETYLLGFSDSDA  298 (312)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  298 (312)
                       ......++.+++.+ .++.|+..|...+.|..+.         ..+....++|++..++.+..++.+|++.++.+..
T Consensus       406 -~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~  481 (626)
T KOG2106|consen  406 -IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR  481 (626)
T ss_pred             -ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence             11122344466766 7888888888888886543         2333347889999999998898999998876544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=4.8e-17  Score=125.32  Aligned_cols=203  Identities=15%  Similarity=0.212  Sum_probs=137.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEc-CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID-PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   79 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~   79 (312)
                      |+|||.++....  +.+.     ..|..|.+.|..+.|- |.-++.+|+++.|+++.||.-...+.      +.+-+...
T Consensus        37 vkI~d~~~~s~~--W~~T-----s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~------~~~~~~Wv  103 (361)
T KOG2445|consen   37 VKIWDSTSDSGT--WSCT-----SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE------EAHGRRWV  103 (361)
T ss_pred             EEEEeccCCCCc--eEEe-----eeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc------ccccceeE
Confidence            578887554432  2221     1123489999999994 54348999999999999998753321      11122222


Q ss_pred             ccccccCCCccEEEEEEccCC--CeEEEe-cCCcEEEEEcCCCcC----------------C--CC--------------
Q 021484           80 PRHLIGKNNIHITGLAYSNTS--ELLISY-NDELVYLFEKNMGLG----------------P--SP--------------  124 (312)
Q Consensus        80 ~~~~~~~~~~~i~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~----------------~--~~--------------  124 (312)
                      ....+......|+.+.|.|..  ..+|++ .||.+|||+......                +  +.              
T Consensus       104 ~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~  183 (361)
T KOG2445|consen  104 RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH  183 (361)
T ss_pred             EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecccccc
Confidence            333446667899999999965  477776 699999999754320                0  00              


Q ss_pred             ---------------CcCCccc----ccCCCCCceEecccCCceeeEEEEecCC----CCEEEEeccCceEEEEeccCC-
Q 021484          125 ---------------LSLSPED----LQKREEPQVYSGHRNSQTVKGVNFFGPN----DEYVMSGSDCGHLFIWKKKGG-  180 (312)
Q Consensus       125 ---------------~~~~~~~----~~~~~~~~~~~~~~~~~~v~~v~~~s~~----~~~l~~~~~dg~v~iwd~~~~-  180 (312)
                                     ....++.    ..+...+..+.+|..+  |++++| .|+    -.+||+++.|| |+||.+... 
T Consensus       184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp--I~di~w-APn~Gr~y~~lAvA~kDg-v~I~~v~~~~  259 (361)
T KOG2445|consen  184 EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP--IRDISW-APNIGRSYHLLAVATKDG-VRIFKVKVAR  259 (361)
T ss_pred             CceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc--ceeeee-ccccCCceeeEEEeecCc-EEEEEEeecc
Confidence                           0000000    1223334445567755  999999 775    35789999999 999998631 


Q ss_pred             -------------------eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484          181 -------------------KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  220 (312)
Q Consensus       181 -------------------~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  220 (312)
                                         +.+..+..|.+.|..+.|+-.|..|++.|.||.||+|...
T Consensus       260 s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  260 SAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             chhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence                               2345667899999999999999999999999999999743

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=2e-17  Score=136.93  Aligned_cols=186  Identities=18%  Similarity=0.271  Sum_probs=138.2

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc---cccccccCCCccEEEEEEccCCCeE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF---CPRHLIGKNNIHITGLAYSNTSELL  103 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l  103 (312)
                      .+|.++|.|++..+++ ..+++|+.||+|+.|++....        .+...+   .....+.+|.+.++.+++++....|
T Consensus       341 raH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~--------dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~L  411 (577)
T KOG0642|consen  341 RAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQ--------DPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRL  411 (577)
T ss_pred             ecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCC--------CcccccCcchhccceeccccceeeeeecccccce
Confidence            4699999999999998 899999999999999887221        111111   2334457999999999999988888


Q ss_pred             EEe-cCCcEEEEEcCCCcC-----CCCCc-----------------------CCcccccCCCCCceEeccc-----CCce
Q 021484          104 ISY-NDELVYLFEKNMGLG-----PSPLS-----------------------LSPEDLQKREEPQVYSGHR-----NSQT  149 (312)
Q Consensus       104 ~s~-~d~~i~iwd~~~~~~-----~~~~~-----------------------~~~~~~~~~~~~~~~~~~~-----~~~~  149 (312)
                      +++ .||++++|+......     +....                       ..+.++......+.+....     ....
T Consensus       412 lscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~  491 (577)
T KOG0642|consen  412 LSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ  491 (577)
T ss_pred             eeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence            887 599999999865431     00000                       0000111111122221111     1122


Q ss_pred             eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                      +..+.+ .|.+.+.+++..|+.|+++|..+++++.....|...++++++.|+|.+|++++.|+.+++|.+...
T Consensus       492 in~vVs-~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  492 INKVVS-HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             cceEEe-cCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence            566776 788999999999999999999999999999999999999999999999999999999999998654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.77  E-value=7.7e-18  Score=143.15  Aligned_cols=176  Identities=14%  Similarity=0.239  Sum_probs=132.9

Q ss_pred             CCccceEEEEEcC--CCCcEEEEEeCCCeEEEEEccCCe-ecCCCCC-CCCc-------------------------ccc
Q 021484           28 MNSIRLNAIVIDP--RNPNYFAVGGSDEYARVYDIRKCH-WYSPISS-DTPV-------------------------DTF   78 (312)
Q Consensus        28 ~h~~~v~~~~~~p--~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~-~~~~-------------------------~~~   78 (312)
                      .|...|.|+.|+.  .+..+||+++.|+-|.+||+...- +..+... ...+                         +.+
T Consensus       499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~  578 (1080)
T KOG1408|consen  499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVN  578 (1080)
T ss_pred             cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehh
Confidence            4889999999985  233689999999999999986332 2211111 0000                         000


Q ss_pred             c---cccccc-----CCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC-c
Q 021484           79 C---PRHLIG-----KNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-Q  148 (312)
Q Consensus        79 ~---~~~~~~-----~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  148 (312)
                      .   ...++.     .....++.++..|..++++++ .|..|+||++.++                +..+.|++..+. +
T Consensus       579 qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg----------------Kq~k~FKgs~~~eG  642 (1080)
T KOG1408|consen  579 QKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG----------------KQVKSFKGSRDHEG  642 (1080)
T ss_pred             ccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc----------------ceeeeecccccCCC
Confidence            0   000001     113456777777877777774 6888999998888                788888865432 3


Q ss_pred             eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484          149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  220 (312)
Q Consensus       149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  220 (312)
                      ....+.. +|.|.||++.+.|.++.++|+.+++++.++.+|...|+.+.|.++.++|++.+.||.|.||.+.
T Consensus       643 ~lIKv~l-DPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  643 DLIKVIL-DPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ceEEEEE-CCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence            4667777 9999999999999999999999999999999999999999999999999999999999999875

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.3e-16  Score=134.68  Aligned_cols=216  Identities=14%  Similarity=0.189  Sum_probs=160.5

Q ss_pred             eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccc
Q 021484            2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR   81 (312)
Q Consensus         2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      --||+.+.++...+.+           ..+.|.+++.+|.+ ..++.|+.||.+..++...+.+             .-.
T Consensus        93 ~EwDl~~lk~~~~~d~-----------~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I-------------~~~  147 (691)
T KOG2048|consen   93 TEWDLHTLKQKYNIDS-----------NGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKI-------------TYK  147 (691)
T ss_pred             EEEecccCceeEEecC-----------CCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceE-------------EEE
Confidence            3588877665444433           35689999999988 8999999999888888776653             222


Q ss_pred             ccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCce-----Eeccc-CCceeeEEE
Q 021484           82 HLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-----YSGHR-NSQTVKGVN  154 (312)
Q Consensus        82 ~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~v~~v~  154 (312)
                      ..+....+.+.+++|+|++..+++| .||.|++||..++                ..+..     ..... ...-|.++.
T Consensus       148 r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~----------------~t~~~~~~~~d~l~k~~~~iVWSv~  211 (691)
T KOG2048|consen  148 RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG----------------QTLHIITMQLDRLSKREPTIVWSVL  211 (691)
T ss_pred             eecccccceEEEEEecCCccEEEecccCceEEEEEcCCC----------------ceEEEeeecccccccCCceEEEEEE
Confidence            3334557899999999999988887 5999999999876                22221     11111 122378888


Q ss_pred             EecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-----CCCCC
Q 021484          155 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-----PPLPD  229 (312)
Q Consensus       155 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~  229 (312)
                      |.  ....|++|..-|+|.+||...+..+..+..|.+.|.+++..+++..+++++.|+.|.-|...+..-     .....
T Consensus       212 ~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~  289 (691)
T KOG2048|consen  212 FL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL  289 (691)
T ss_pred             Ee--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccC
Confidence            73  566799999999999999999999999999999999999999999999999999999988776531     22223


Q ss_pred             ChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          230 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      |...+-..+..   +..+++++.|..+.+-.+..
T Consensus       290 h~hdvrs~av~---~~~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  290 HAHDVRSMAVI---ENALISGGRDFTLAICSSRE  320 (691)
T ss_pred             Ccccceeeeee---cceEEecceeeEEEEccccc
Confidence            44444333222   23889999999888876554

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=5.4e-17  Score=126.71  Aligned_cols=192  Identities=14%  Similarity=0.225  Sum_probs=138.7

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC--CCeEEEe-cCCcEEEEEcCCCc
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISY-NDELVYLFEKNMGL  120 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~  120 (312)
                      ..+|++.++|.|++||..+++..              ..+ +++...+..++|...  ...+.++ .||+|++||++...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l--------------~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~  105 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLL--------------EEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA  105 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhh--------------hee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch
Confidence            57899999999999999998732              222 677777888888774  4566665 69999999998862


Q ss_pred             CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc----CceEEEEeccCCee-EEEe-ecCccceE
Q 021484          121 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWKKKGGKL-VRLM-VGDRHVVN  194 (312)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~----dg~v~iwd~~~~~~-~~~~-~~~~~~v~  194 (312)
                                    ......+.++. +.+..+++- +-.++.+++|++    +-.|.+||++..+. +..+ ..|...|+
T Consensus       106 --------------e~a~~~~~~~~-~~~f~~ld~-nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT  169 (376)
T KOG1188|consen  106 --------------ESARISWTQQS-GTPFICLDL-NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVT  169 (376)
T ss_pred             --------------hhhheeccCCC-CCcceEeec-cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcce
Confidence                          02233334444 233566664 557788888864    67899999997765 5555 57999999


Q ss_pred             EEEEcCCCC-eEEEEeCCCcEEEccCCCCC----CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484          195 QLEPHPHIP-MFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       195 ~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      ++.|+|..+ +|++||.||.|.|||+....    +.....+...+-.+.|..+....+...+....+.+|++.....
T Consensus       170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence            999999775 59999999999999987653    2223334444544454444445688889999999999877643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=5.3e-16  Score=116.02  Aligned_cols=224  Identities=13%  Similarity=0.123  Sum_probs=144.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV  111 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i  111 (312)
                      .|.+-+|+|.+ ++|++|..+|.|.+..+.+..-... ..+..    .+.....+|.++|..++|.  ..+|.++.||.|
T Consensus        12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa-~~~gk----~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V   83 (325)
T KOG0649|consen   12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSA-EPPGK----LKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLV   83 (325)
T ss_pred             HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhcccc-CCCCC----cceeeccccCCCeeeeeee--hhheeeccCceE
Confidence            46677899988 8999999999999999875431111 00100    0111127899999999998  458888889999


Q ss_pred             EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCcc
Q 021484          112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  191 (312)
Q Consensus       112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  191 (312)
                      +=|.-+........ -+.|....  +.+.-.....  .|.++.. .|..+-++.++.|+.++-||+.+|+..+++++|+.
T Consensus        84 ~gw~W~E~~es~~~-K~lwe~~~--P~~~~~~evP--eINam~l-dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD  157 (325)
T KOG0649|consen   84 YGWEWNEEEESLAT-KRLWEVKI--PMQVDAVEVP--EINAMWL-DPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD  157 (325)
T ss_pred             EEeeehhhhhhccc-hhhhhhcC--ccccCcccCC--ccceeEe-ccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence            98875433111000 00011110  0000000111  2777766 78877777788999999999999999999999999


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhh-hhh------hccCCCCceeEEecCCceEEEEEecc
Q 021484          192 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKI-MKA------NKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       192 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~-~~~------~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      .|.++.--.....+++|++||++|+||.++++. .++....+.- ...      .+...+..+++.| ..-.+.+|.++.
T Consensus       158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG-gGp~lslwhLrs  236 (325)
T KOG0649|consen  158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG-GGPKLSLWHLRS  236 (325)
T ss_pred             eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec-CCCceeEEeccC
Confidence            999998866667789999999999999999874 3332221111 110      0112234455443 345678999887


Q ss_pred             cCcccee
Q 021484          264 RQTLAYR  270 (312)
Q Consensus       264 ~~~~~~~  270 (312)
                      ......+
T Consensus       237 se~t~vf  243 (325)
T KOG0649|consen  237 SESTCVF  243 (325)
T ss_pred             CCceEEE
Confidence            6544333

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.9e-16  Score=122.68  Aligned_cols=166  Identities=13%  Similarity=0.115  Sum_probs=116.5

Q ss_pred             CCCccceEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCC-ccEEEEEEccCCCeEE
Q 021484           27 PMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN-IHITGLAYSNTSELLI  104 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~  104 (312)
                      ++|+..++.++|... .+..+.+++.||+|++||++.....       +..      ....++ .+..+++.+-.+++++
T Consensus        67 k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-------a~~------~~~~~~~~~f~~ld~nck~~ii~  133 (376)
T KOG1188|consen   67 KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-------ARI------SWTQQSGTPFICLDLNCKKNIIA  133 (376)
T ss_pred             cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-------hhe------eccCCCCCcceEeeccCcCCeEE
Confidence            457788889999763 6689999999999999999977621       111      113333 3555666655667777


Q ss_pred             Eec-----CCcEEEEEcCCCcCCCCCcCCcccccCCC-CCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc
Q 021484          105 SYN-----DELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK  178 (312)
Q Consensus       105 s~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~  178 (312)
                      ++.     +..|.+||.++..               + .......|...  |+++.|++.+.++|++|+-||-|.+||+.
T Consensus       134 ~GtE~~~s~A~v~lwDvR~~q---------------q~l~~~~eSH~DD--VT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  134 CGTELTRSDASVVLWDVRSEQ---------------QLLRQLNESHNDD--VTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             eccccccCceEEEEEEecccc---------------chhhhhhhhccCc--ceeEEecCCCCCeEEeecccceEEeeecC
Confidence            752     6679999999862               2 23344578776  99999976678999999999999999987


Q ss_pred             CCee---EEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCC
Q 021484          179 GGKL---VRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       179 ~~~~---~~~~~~~~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~  222 (312)
                      ....   +...-.|...|..+.|+..+ +.+.+-+..++..+|+++.+
T Consensus       197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence            4321   12222356678888887766 23555666778888887644

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.73  E-value=4.8e-17  Score=129.62  Aligned_cols=180  Identities=16%  Similarity=0.242  Sum_probs=140.9

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      ..+|..+.|.++..+.++||+.|..|++|-+......      ...........+..|...|+.+.|+|+|.+||++ .+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~------~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~   86 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG------GGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG   86 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCC------CCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence            4689999999988569999999999999999866521      1001112233447899999999999999999998 58


Q ss_pred             CcEEEEEcCCCcCCCCCcCCccc--ccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPED--LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      |.+.+|-...- .+.+..- ..+  ...+...+.+.+|...  +..++| +|+++++++++.|..+++||+..|+....+
T Consensus        87 g~v~lWk~~~~-~~~~~d~-e~~~~ke~w~v~k~lr~h~~d--iydL~W-s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~  161 (434)
T KOG1009|consen   87 GEVFLWKQGDV-RIFDADT-EADLNKEKWVVKKVLRGHRDD--IYDLAW-SPDSNFLVSGSVDNSVRLWDVHAGQLLAIL  161 (434)
T ss_pred             ceEEEEEecCc-CCccccc-hhhhCccceEEEEEecccccc--hhhhhc-cCCCceeeeeeccceEEEEEeccceeEeec
Confidence            99999987631 1111100 111  1123445667788866  999999 999999999999999999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  220 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  220 (312)
                      ..|..-|..++|.|-++++++-+.|...+.+.+.
T Consensus       162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             cccccccceeecchhhhhhhhhccCcccceeeee
Confidence            9999999999999999999999999877776654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=9.9e-18  Score=144.62  Aligned_cols=231  Identities=18%  Similarity=0.319  Sum_probs=169.7

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||...|+|+.|...| +++++|+.|..++||...+..              |.... .+|.+.|+.++.+.+..+++++
T Consensus       187 lgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~--------------~lAs~-rGhs~ditdlavs~~n~~iaaa  250 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETAR--------------CLASC-RGHSGDITDLAVSSNNTMIAAA  250 (1113)
T ss_pred             Hhhhhheeeeeecccc-ceEeecCccceeeeeeccchh--------------hhccC-CCCccccchhccchhhhhhhhc
Confidence            4899999999999999 899999999999999999887              44444 8999999999999988888886


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-----
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-----  180 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-----  180 (312)
                       .|..|++|.+..+                .++..+.+|.+.  |++++| +|-.    +.+.||++++||.+-.     
T Consensus       251 S~D~vIrvWrl~~~----------------~pvsvLrghtga--vtaiaf-sP~~----sss~dgt~~~wd~r~~~~~y~  307 (1113)
T KOG0644|consen  251 SNDKVIRVWRLPDG----------------APVSVLRGHTGA--VTAIAF-SPRA----SSSDDGTCRIWDARLEPRIYV  307 (1113)
T ss_pred             ccCceEEEEecCCC----------------chHHHHhccccc--eeeecc-Cccc----cCCCCCceEeccccccccccC
Confidence             4999999999998                799999999977  999999 7754    7789999999997710     


Q ss_pred             ---------eeEEEee----------c------CccceEEEEEcCCCCeEE-----------EEeCCCcEEEccCCCCCC
Q 021484          181 ---------KLVRLMV----------G------DRHVVNQLEPHPHIPMFA-----------TCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       181 ---------~~~~~~~----------~------~~~~v~~~~~~p~~~~l~-----------t~~~d~~i~iwd~~~~~~  224 (312)
                               ..+..+.          +      .......++|....-.++           ++=.+-.+++|++.++.+
T Consensus       308 prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l  387 (1113)
T KOG0644|consen  308 PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL  387 (1113)
T ss_pred             CCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchh
Confidence                     0000000          0      000112233333332333           333455678888887753


Q ss_pred             -CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc----------ceeEeecCCCccCCCCCCCeEEEeec
Q 021484          225 -PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL----------AYRERRYNAADFESDEEEGETYLLGF  293 (312)
Q Consensus       225 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~  293 (312)
                       +.+.+|...++.+..-..+.+..++.+.||...|||+..+...          +-..++++++.+...++-|.+|++++
T Consensus       388 ~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  388 LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT  467 (1113)
T ss_pred             hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence             5555666666544433347788899999999999998765322          11267778888888888899999987


Q ss_pred             CCC
Q 021484          294 SDS  296 (312)
Q Consensus       294 ~~~  296 (312)
                      -.+
T Consensus       468 gqs  470 (1113)
T KOG0644|consen  468 GQS  470 (1113)
T ss_pred             CCC
Confidence            544

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.73  E-value=1.3e-15  Score=118.29  Aligned_cols=244  Identities=9%  Similarity=0.131  Sum_probs=171.8

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEc-------cCCCeEE
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-------NTSELLI  104 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~l~  104 (312)
                      -...+.|+|+| ..|++-+.|..+++|++...-............  ....+.......|..-+|-       |+..+++
T Consensus        51 f~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~--~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a  127 (406)
T KOG2919|consen   51 FLKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFS--KHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA  127 (406)
T ss_pred             hhccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccc--cceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence            35678999999 799999999999999997443221111111111  1111111224556777775       4445666


Q ss_pred             Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCc---eeeEEEEecCCCCEEEEeccCceEEEEec-cC
Q 021484          105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVNFFGPNDEYVMSGSDCGHLFIWKK-KG  179 (312)
Q Consensus       105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~~s~~~~~l~~~~~dg~v~iwd~-~~  179 (312)
                      ++ .+.-|++||..++                ++...+.+.....   ...+++| +|+|.+|++| ....|++||+ ++
T Consensus       128 ~ssr~~PIh~wdaftG----------------~lraSy~~ydh~de~taAhsL~F-s~DGeqlfaG-ykrcirvFdt~Rp  189 (406)
T KOG2919|consen  128 VSSRDQPIHLWDAFTG----------------KLRASYRAYDHQDEYTAAHSLQF-SPDGEQLFAG-YKRCIRVFDTSRP  189 (406)
T ss_pred             eccccCceeeeecccc----------------ccccchhhhhhHHhhhhheeEEe-cCCCCeEeec-ccceEEEeeccCC
Confidence            65 5999999999988                5665555432211   2578999 9999999876 5789999998 66


Q ss_pred             CeeEEEe--e-----cCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEe
Q 021484          180 GKLVRLM--V-----GDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITL  250 (312)
Q Consensus       180 ~~~~~~~--~-----~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~  250 (312)
                      |.-...+  .     +..+.+.+++|+|... .++.++.-.++-||.-..+.+ ..+.+|...+. -..+..+++.|++|
T Consensus       190 Gr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT-hL~~~edGn~lfsG  268 (406)
T KOG2919|consen  190 GRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT-HLQWCEDGNKLFSG  268 (406)
T ss_pred             CCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCee-eEEeccCcCeeccc
Confidence            6432221  1     2356789999999776 689999999999988777764 55667777774 44578888888887


Q ss_pred             cC-CceEEEEEeccc--------------CccceeEeecCCCccCCCCCCCeEEEeecCC-CC
Q 021484          251 TP-DVIMHVLRLQRR--------------QTLAYRERRYNAADFESDEEEGETYLLGFSD-SD  297 (312)
Q Consensus       251 ~~-d~~i~i~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~  297 (312)
                      +. +-.|-.||++..              +..+++...+.+.-+++++.+|.|-+||..+ ++
T Consensus       269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence            75 688999998753              3445557778889999999999999999987 44

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=8.6e-17  Score=128.86  Aligned_cols=196  Identities=12%  Similarity=0.114  Sum_probs=141.4

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEE
Q 021484           34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVY  112 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~  112 (312)
                      .+++|+++| ..+++|+.||++|+|+..+...              .... ..|...|.++.|+|||++|++- .| ..+
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t--------------~l~e-~~~~~eV~DL~FS~dgk~lasig~d-~~~  210 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLT--------------ILEE-IAHHAEVKDLDFSPDGKFLASIGAD-SAR  210 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchh--------------hhhh-HhhcCccccceeCCCCcEEEEecCC-ceE
Confidence            679999998 8999999999999999776541              1112 5678889999999999999995 57 999


Q ss_pred             EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-----CEEEEeccCceEEEEeccCCee-----
Q 021484          113 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-----EYVMSGSDCGHLFIWKKKGGKL-----  182 (312)
Q Consensus       113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-----~~l~~~~~dg~v~iwd~~~~~~-----  182 (312)
                      ||+..++                ..+..............+.| +.++     ..++.....+.|..|++...+.     
T Consensus       211 VW~~~~g----------------~~~a~~t~~~k~~~~~~cRF-~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~  273 (398)
T KOG0771|consen  211 VWSVNTG----------------AALARKTPFSKDEMFSSCRF-SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR  273 (398)
T ss_pred             EEEeccC----------------chhhhcCCcccchhhhhcee-cccCCCceEEEEEecCCCCceeEEEeeeeccccccc
Confidence            9999987                44444442222223566677 5555     2333444566677766543221     


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .++.......|++++.+++|++++.|+.||.|-|++..+.+. +.++..+...++...++|+.+++.+.+.+....+..+
T Consensus       274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  274 LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            111111234799999999999999999999999999887653 3333333335577778999999999999999999887


Q ss_pred             cc
Q 021484          262 QR  263 (312)
Q Consensus       262 ~~  263 (312)
                      ..
T Consensus       354 ~v  355 (398)
T KOG0771|consen  354 AV  355 (398)
T ss_pred             ee
Confidence            65

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.72  E-value=2.4e-15  Score=118.75  Aligned_cols=159  Identities=16%  Similarity=0.221  Sum_probs=126.6

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e--
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y--  106 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~--  106 (312)
                      +.+|.++.++.+   +|++.-. ..|+|||+++-++..++..-            ..+...+.++..++.+.++|. +  
T Consensus        87 pt~IL~VrmNr~---RLvV~Le-e~IyIydI~~MklLhTI~t~------------~~n~~gl~AlS~n~~n~ylAyp~s~  150 (391)
T KOG2110|consen   87 PTSILAVRMNRK---RLVVCLE-ESIYIYDIKDMKLLHTIETT------------PPNPKGLCALSPNNANCYLAYPGST  150 (391)
T ss_pred             CCceEEEEEccc---eEEEEEc-ccEEEEecccceeehhhhcc------------CCCccceEeeccCCCCceEEecCCC
Confidence            567889999874   4444444 44999999988855432210            234455666666666678887 3  


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCce-EEEEeccCCeeEEE
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLVRL  185 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~-v~iwd~~~~~~~~~  185 (312)
                      ..|.|.+||+.+-                +....+..|.+.  +-+++| +++|.+||++++.|+ |+|+.+.+|+.+.+
T Consensus       151 t~GdV~l~d~~nl----------------~~v~~I~aH~~~--lAalaf-s~~G~llATASeKGTVIRVf~v~~G~kl~e  211 (391)
T KOG2110|consen  151 TSGDVVLFDTINL----------------QPVNTINAHKGP--LAALAF-SPDGTLLATASEKGTVIRVFSVPEGQKLYE  211 (391)
T ss_pred             CCceEEEEEcccc----------------eeeeEEEecCCc--eeEEEE-CCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence            3899999999887                788888999976  999999 999999999999887 78999999999999


Q ss_pred             eecCc--cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          186 MVGDR--HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       186 ~~~~~--~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      |+...  ..|.+++|+|++++|++.|..++|.+|.+....
T Consensus       212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            97544  468899999999999999999999999987654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.72  E-value=2.9e-16  Score=129.51  Aligned_cols=152  Identities=17%  Similarity=0.241  Sum_probs=115.6

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCC--CCCCCCccccc-----------ccccccCCCccEEEEEE
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP--ISSDTPVDTFC-----------PRHLIGKNNIHITGLAY   96 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~   96 (312)
                      +..|+|+.|-|.++.+|+.+..+|.+++||..--.-...  ......-..|.           +...+.--...|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            468999999998878999999999999998732110000  00000000000           00001112457889999


Q ss_pred             ccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEE
Q 021484           97 SNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW  175 (312)
Q Consensus        97 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iw  175 (312)
                      +|||++||+- .||.++|||..+.                +++-.++..-..  ..|++| +|||+||++|++|--|.||
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~----------------eLlg~mkSYFGG--LLCvcW-SPDGKyIvtGGEDDLVtVw  359 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQ----------------ELLGVMKSYFGG--LLCVCW-SPDGKYIVTGGEDDLVTVW  359 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHH----------------HHHHHHHhhccc--eEEEEE-cCCccEEEecCCcceEEEE
Confidence            9999999995 6999999999886                666666666655  999999 9999999999999999999


Q ss_pred             eccCCeeEEEeecCccceEEEEEcC
Q 021484          176 KKKGGKLVRLMVGDRHVVNQLEPHP  200 (312)
Q Consensus       176 d~~~~~~~~~~~~~~~~v~~~~~~p  200 (312)
                      .+...+.+..-++|+..|+.|+|.|
T Consensus       360 Sf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  360 SFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EeccceEEEeccccccceeeEeecc
Confidence            9999999999999999999999987

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.72  E-value=6.3e-16  Score=131.02  Aligned_cols=205  Identities=14%  Similarity=0.177  Sum_probs=146.0

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCC-----CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSD-----EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE  101 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  101 (312)
                      -||.-.|++++.+|++ +++|+++..     -.|++|+..+..              ... .+.+|.-.|+.++|||+|+
T Consensus       522 YGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~--------------~~~-~L~~HsLTVT~l~FSpdg~  585 (764)
T KOG1063|consen  522 YGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWL--------------QVQ-ELEGHSLTVTRLAFSPDGR  585 (764)
T ss_pred             ccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchh--------------hhh-eecccceEEEEEEECCCCc
Confidence            3899999999999999 899998654     459999988765              222 2388999999999999999


Q ss_pred             eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC
Q 021484          102 LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG  180 (312)
Q Consensus       102 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~  180 (312)
                      +|++. .|.++.+|........            .......+.|.  ..|.++.| +|++.+++|++.|.+|++|.....
T Consensus       586 ~LLsvsRDRt~sl~~~~~~~~~------------e~~fa~~k~Ht--RIIWdcsW-~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  586 YLLSVSRDRTVSLYEVQEDIKD------------EFRFACLKAHT--RIIWDCSW-SPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEEEeecCceEEeeeeecccch------------hhhhccccccc--eEEEEccc-CcccceeEEecCCceEEEEeccCc
Confidence            88885 6999999998543100            00112245666  44999999 999999999999999999998766


Q ss_pred             --eeEEEe--ecCccceEEEEEcCCC----C-eEEEEeCCCcEEEccCCCCC-------------CCCCCCChhhhhhhh
Q 021484          181 --KLVRLM--VGDRHVVNQLEPHPHI----P-MFATCGIEKTVKLWAPMPTD-------------FPPLPDNAEKIMKAN  238 (312)
Q Consensus       181 --~~~~~~--~~~~~~v~~~~~~p~~----~-~l~t~~~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~  238 (312)
                        +.+..+  ..+..+|+.++|.|-.    . .++.|-..|.|.+|......             ......+...+..+.
T Consensus       651 ~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~  730 (764)
T KOG1063|consen  651 RDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLL  730 (764)
T ss_pred             hhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeE
Confidence              444332  3477899999998732    2 46777789999999954111             111123444444444


Q ss_pred             ccCC---------CCceeEEecCCceEEEEEec
Q 021484          239 KQGR---------EDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       239 ~~~~---------~~~~l~s~~~d~~i~i~~~~  262 (312)
                      |.+.         +...++.++.|..+|++++.
T Consensus       731 w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  731 WRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             eccccccccccccceeEEeeecccceeEEeecc
Confidence            3322         12345788888888888753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.70  E-value=2.4e-15  Score=114.89  Aligned_cols=154  Identities=12%  Similarity=0.175  Sum_probs=108.9

Q ss_pred             EEEEEcCCCCcEEEEEeC---------CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021484           34 NAIVIDPRNPNYFAVGGS---------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  104 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  104 (312)
                      ..+.|+|+|..+++....         -+...+|.++...        .+     ...+.....++|.+++|+|+|+.++
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--------~~-----~~~i~l~~~~~I~~~~WsP~g~~fa   75 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--------IP-----VESIELKKEGPIHDVAWSPNGNEFA   75 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC--------Cc-----cceeeccCCCceEEEEECcCCCEEE
Confidence            468899999555544441         1345566664332        01     1111122345699999999998654


Q ss_pred             E--e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---CceEEEEecc
Q 021484          105 S--Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWKKK  178 (312)
Q Consensus       105 s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---dg~v~iwd~~  178 (312)
                      .  + .++.|.+||++.                 +.+..+.  ...  +..+.| +|+|++|++++.   .|.|.+||.+
T Consensus        76 vi~g~~~~~v~lyd~~~-----------------~~i~~~~--~~~--~n~i~w-sP~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   76 VIYGSMPAKVTLYDVKG-----------------KKIFSFG--TQP--RNTISW-SPDGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             EEEccCCcccEEEcCcc-----------------cEeEeec--CCC--ceEEEE-CCCCCEEEEEEccCCCcEEEEEECC
Confidence            4  3 378999999963                 4555554  222  778999 999999998864   4679999999


Q ss_pred             CCeeEEEeecCccceEEEEEcCCCCeEEEEeC------CCcEEEccCCCCCC
Q 021484          179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDF  224 (312)
Q Consensus       179 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~------d~~i~iwd~~~~~~  224 (312)
                      +.+.+.... | ..++.++|+|+|++|+++..      |..++||+..+..+
T Consensus       134 ~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l  183 (194)
T PF08662_consen  134 KKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL  183 (194)
T ss_pred             CCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence            888887765 3 34789999999999988863      78899999887654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.69  E-value=3.7e-16  Score=118.09  Aligned_cols=171  Identities=12%  Similarity=0.137  Sum_probs=124.2

Q ss_pred             CccceEEEEEcCC-CC-cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-
Q 021484           29 NSIRLNAIVIDPR-NP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-  105 (312)
Q Consensus        29 h~~~v~~~~~~p~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-  105 (312)
                      ..+.++|..+.-. +. -++++|-++|.+.+||+.++..+-......     ........|.++|.++.+.+....=++ 
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~-----kv~~~~ash~qpvlsldyas~~~rGisg  223 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS-----KVESPNASHKQPVLSLDYASSCDRGISG  223 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc-----ccccchhhccCcceeeeechhhcCCcCC
Confidence            3566777775432 21 356778899999999999874221111000     111122578999999999876543344 


Q ss_pred             ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                      +.+..+..|.+....+            ..............  |..+.. -||++.+++++.|++|+||+.++.+++..
T Consensus       224 ga~dkl~~~Sl~~s~g------------slq~~~e~~lknpG--v~gvrI-RpD~KIlATAGWD~RiRVyswrtl~pLAV  288 (323)
T KOG0322|consen  224 GADDKLVMYSLNHSTG------------SLQIRKEITLKNPG--VSGVRI-RPDGKILATAGWDHRIRVYSWRTLNPLAV  288 (323)
T ss_pred             CccccceeeeeccccC------------cccccceEEecCCC--ccceEE-ccCCcEEeecccCCcEEEEEeccCCchhh
Confidence            4577888888864311            11222233323333  788888 89999999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                      ++-|.+.|++++|+|+...+|+++.|++|.+|++
T Consensus       289 LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  289 LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999999999999986

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.69  E-value=4e-15  Score=128.47  Aligned_cols=237  Identities=15%  Similarity=0.129  Sum_probs=161.3

Q ss_pred             CeeecccCcccee--eEEecccccCCcCCCCccceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCCeecCCCCCCCCccc
Q 021484            1 MWQFDLRSDSATR--LFYCSSFSENSKQPMNSIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   77 (312)
Q Consensus         1 v~~wd~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   77 (312)
                      |-+||++.....+  .++...       ..|+.+++.+.|-.+.. .-|++++.||.|..|+++...+.        ...
T Consensus       267 V~lWD~~~~~~~~~s~ls~~~-------~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P--------~e~  331 (555)
T KOG1587|consen  267 VVLWDLRKGSDTPPSGLSALE-------VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLP--------VEG  331 (555)
T ss_pred             EEEEEccCCCCCCCccccccc-------ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccc--------hhh
Confidence            4689999876532  233322       24999999999976431 35888999999999988754421        111


Q ss_pred             cccccc-----ccCCCccEEEEEEccCCC--eEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCcee
Q 021484           78 FCPRHL-----IGKNNIHITGLAYSNTSE--LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV  150 (312)
Q Consensus        78 ~~~~~~-----~~~~~~~i~~~~~~~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  150 (312)
                      ......     .......+++++|.+...  +++.+.+|.|+.-+.........        .-.+....+..|.+.  |
T Consensus       332 ~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--------~~~~~~~~~~~h~g~--v  401 (555)
T KOG1587|consen  332 LLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--------VSYKGHSTFITHIGP--V  401 (555)
T ss_pred             cccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc--------ccccccccccccCcc--e
Confidence            111111     012245688999988663  55555799988755443310000        000223344556655  9


Q ss_pred             eEEEEecCCCCEEEEeccCceEEEEecc-CCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCCCCCC
Q 021484          151 KGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLP  228 (312)
Q Consensus       151 ~~v~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~  228 (312)
                      ..+.+ +|-+..++..+.|.++++|... ...++..+..+...|++++|||.... |+++..||.|.+||+.........
T Consensus       402 ~~v~~-nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~  480 (555)
T KOG1587|consen  402 YAVSR-NPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL  480 (555)
T ss_pred             Eeeec-CCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence            99999 8877666555559999999987 67788888888888999999999876 788889999999998765432221


Q ss_pred             --CChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          229 --DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       229 --~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                        .....++....++..+..++.|...|.++++++..
T Consensus       481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence              11255566667777899999999999999999854

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.68  E-value=1.5e-15  Score=128.56  Aligned_cols=224  Identities=11%  Similarity=0.084  Sum_probs=163.2

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||++.|+|++|+.+| .+||+|+.|..|.+|+..-..                 .+-..|.+.|.++.|+|-.+.|+++
T Consensus        50 KgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG-----------------~LkYSH~D~IQCMsFNP~~h~LasC  111 (1081)
T KOG1538|consen   50 KGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEG-----------------ILKYSHNDAIQCMSFNPITHQLASC  111 (1081)
T ss_pred             ccccceEEEEEEccCC-ceeccCCCceeEEEecccccc-----------------eeeeccCCeeeEeecCchHHHhhhc
Confidence            3699999999999999 899999999999999976322                 1226799999999999999999998


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      +=...-+|.....                 .+..   ++....+.+++| ..+|++|+.|-.+|+|.+=+- +++....+
T Consensus       112 sLsdFglWS~~qK-----------------~V~K---~kss~R~~~CsW-tnDGqylalG~~nGTIsiRNk-~gEek~~I  169 (1081)
T KOG1538|consen  112 SLSDFGLWSPEQK-----------------SVSK---HKSSSRIICCSW-TNDGQYLALGMFNGTISIRNK-NGEEKVKI  169 (1081)
T ss_pred             chhhccccChhhh-----------------hHHh---hhhheeEEEeee-cCCCcEEEEeccCceEEeecC-CCCcceEE
Confidence            7666778887553                 2222   333234889999 999999999999999988754 45554444


Q ss_pred             e---cCccceEEEEEcCCC-----CeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021484          187 V---GDRHVVNQLEPHPHI-----PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  258 (312)
Q Consensus       187 ~---~~~~~v~~~~~~p~~-----~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  258 (312)
                      .   +..++|.+++|+|..     ..++......++.++.+.+..+..-..-.-. .-+....+++.+++.|+.|+.+++
T Consensus       170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~Fd-P~CisYf~NGEy~LiGGsdk~L~~  248 (1081)
T KOG1538|consen  170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFD-PCCISYFTNGEYILLGGSDKQLSL  248 (1081)
T ss_pred             eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCC-chhheeccCCcEEEEccCCCceEE
Confidence            4   356899999999964     3588888999999999887654211100001 123335678999999999999999


Q ss_pred             EEec--------ccCcccee-EeecCCCccCCCCCCCeEEEe
Q 021484          259 LRLQ--------RRQTLAYR-ERRYNAADFESDEEEGETYLL  291 (312)
Q Consensus       259 ~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~  291 (312)
                      +.-.        .....+|. ...|+++.+..+..+|.+-.+
T Consensus       249 fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy  290 (1081)
T KOG1538|consen  249 FTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACY  290 (1081)
T ss_pred             EeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehh
Confidence            8521        12233444 567777777777666666433

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.68  E-value=2e-14  Score=123.87  Aligned_cols=201  Identities=20%  Similarity=0.354  Sum_probs=148.5

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS  105 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  105 (312)
                      +|...|.+++|+|++ ..+++++. |+.+++|++....               ....+..|...+.+++|+|++. ++++
T Consensus       153 ~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~  216 (466)
T COG2319         153 GHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGK---------------PLSTLAGHTDPVSSLAFSPDGGLLIAS  216 (466)
T ss_pred             cCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCc---------------eEEeeccCCCceEEEEEcCCcceEEEE
Confidence            378889999999998 57888775 9999999999744               1122255889999999999998 6666


Q ss_pred             -ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCc-eEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee-
Q 021484          106 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-  182 (312)
Q Consensus       106 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-  182 (312)
                       +.|+.+++||...+                .... .+.+|...  . -..| ++++.++++++.|+.+++|+...... 
T Consensus       217 ~~~d~~i~~wd~~~~----------------~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~  276 (466)
T COG2319         217 GSSDGTIRLWDLSTG----------------KLLRSTLSGHSDS--V-VSSF-SPDGSLLASGSSDGTIRLWDLRSSSSL  276 (466)
T ss_pred             ecCCCcEEEEECCCC----------------cEEeeecCCCCcc--e-eEeE-CCCCCEEEEecCCCcEEEeeecCCCcE
Confidence             46999999988754                4444 56677654  3 2266 88888999999999999999986664 


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCC--CCChhhhhhhhccCCCCceeE-EecCCceEEE
Q 021484          183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL--PDNAEKIMKANKQGREDHSRI-TLTPDVIMHV  258 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~i  258 (312)
                      +..+..|...+.++.|+|++..+++++.|+.+++|+...... ...  ..+...+..... .++...++ .+..|+.+++
T Consensus       277 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~  355 (466)
T COG2319         277 LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRL  355 (466)
T ss_pred             EEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEe
Confidence            444467889999999999888888888899999998887653 222  134443433333 33323444 4467888888


Q ss_pred             EEecccC
Q 021484          259 LRLQRRQ  265 (312)
Q Consensus       259 ~~~~~~~  265 (312)
                      |++....
T Consensus       356 ~~~~~~~  362 (466)
T COG2319         356 WDLRTGK  362 (466)
T ss_pred             eecCCCc
Confidence            9877654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.68  E-value=1.3e-15  Score=125.77  Aligned_cols=182  Identities=11%  Similarity=0.154  Sum_probs=141.5

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      ..|.+.+.+-.|+|+| .-|++++.||.|++|.-. |-+               +..+.....+|.|++|.|+..-++.+
T Consensus       101 ~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrs-GML---------------RStl~Q~~~~v~c~~W~p~S~~vl~c  163 (737)
T KOG1524|consen  101 SAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRS-GML---------------RSTVVQNEESIRCARWAPNSNSIVFC  163 (737)
T ss_pred             hhhhhhhhhcccCCCC-ceeeeecCCceEEEEecc-chH---------------HHHHhhcCceeEEEEECCCCCceEEe
Confidence            4689999999999999 799999999999999854 321               11113346789999999999988888


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      ..+.+.|=.+...                ..+...+.|.+-  |.++.| ++..+.+++|++|-..++||.. |+.+..-
T Consensus       164 ~g~h~~IKpL~~n----------------~k~i~WkAHDGi--iL~~~W-~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S  223 (737)
T KOG1524|consen  164 QGGHISIKPLAAN----------------SKIIRWRAHDGL--VLSLSW-STQSNIIASGGEDFRFKIWDAQ-GANLFTS  223 (737)
T ss_pred             cCCeEEEeecccc----------------cceeEEeccCcE--EEEeec-CccccceeecCCceeEEeeccc-CcccccC
Confidence            8888888877665                566677888865  999999 9999999999999999999976 7788887


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  258 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  258 (312)
                      ..|..+|++++|.|+ ..++.++. .++|+=.++.          ..++.. .|++|+..+..++..|.+.+
T Consensus       224 ~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p~~----------GSifnl-sWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  224 AAEEYAITSVAFNPE-KDYLLWSY-NTARFSSPRV----------GSIFNL-SWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             Chhccceeeeeeccc-cceeeeee-eeeeecCCCc----------cceEEE-EEcCCCceeeccccCceEEE
Confidence            889999999999999 66666663 4566333333          333333 36777777777777776544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=7.3e-15  Score=126.84  Aligned_cols=191  Identities=14%  Similarity=0.086  Sum_probs=124.8

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCC---CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      |...+.+.+|+|++ +.|+.++.+   ..|++||+.+++..            ..... .+|   ...++|+|+|+.|+.
T Consensus       202 ~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~------------~l~~~-~g~---~~~~~wSPDG~~La~  264 (429)
T PRK01742        202 SSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARK------------VVASF-RGH---NGAPAFSPDGSRLAF  264 (429)
T ss_pred             CCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceE------------EEecC-CCc---cCceeECCCCCEEEE
Confidence            56679999999999 666665543   47999999877521            01111 222   336899999997776


Q ss_pred             e--cCCcEEE--EEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEEeccCC
Q 021484          106 Y--NDELVYL--FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGG  180 (312)
Q Consensus       106 ~--~d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~~~  180 (312)
                      +  .++.+.|  ||+.++                 ....+..+...  +....| +|+|+.|+..+ .+|...+|++...
T Consensus       265 ~~~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~w-SpDG~~i~f~s~~~g~~~I~~~~~~  324 (429)
T PRK01742        265 ASSKDGVLNIYVMGANGG-----------------TPSQLTSGAGN--NTEPSW-SPDGQSILFTSDRSGSPQVYRMSAS  324 (429)
T ss_pred             EEecCCcEEEEEEECCCC-----------------CeEeeccCCCC--cCCEEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence            4  3776555  466554                 33445555433  778999 99999876554 5777888876432


Q ss_pred             -eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEE
Q 021484          181 -KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL  259 (312)
Q Consensus       181 -~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~  259 (312)
                       .....+ .+..  ....|+|+|+.++..+.++ +.+||+.++....+.....  .....++++++.++..+.++...+|
T Consensus       325 ~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~--~~~~~~sPdG~~i~~~s~~g~~~~l  398 (429)
T PRK01742        325 GGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFL--DESPSISPNGIMIIYSSTQGLGKVL  398 (429)
T ss_pred             CCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCC--CCCceECCCCCEEEEEEcCCCceEE
Confidence             222223 3433  4578999999998887765 5559998876433321111  1233478899999998888888888


Q ss_pred             Eec
Q 021484          260 RLQ  262 (312)
Q Consensus       260 ~~~  262 (312)
                      .+.
T Consensus       399 ~~~  401 (429)
T PRK01742        399 QLV  401 (429)
T ss_pred             EEE
Confidence            764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=5.2e-15  Score=117.68  Aligned_cols=170  Identities=16%  Similarity=0.324  Sum_probs=134.9

Q ss_pred             cceEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC--CCeEEEe
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISY  106 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~  106 (312)
                      .++..|.-+|..+.++|+|+..  ..+++||+...+.+.......      ...+--.-.-+++++.|-+.  ...||++
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp------nD~L~LrVPvW~tdi~Fl~g~~~~~fat~  222 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP------NDRLGLRVPVWITDIRFLEGSPNYKFATI  222 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC------CccccceeeeeeccceecCCCCCceEEEE
Confidence            3577788888888899999998  899999999776443221110      00000112346778899887  5678886


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                       .-+++++||.+.+.               +++..+.-...+  ++++.. .|+++++++|...|.+..||++.++....
T Consensus       223 T~~hqvR~YDt~~qR---------------RPV~~fd~~E~~--is~~~l-~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  223 TRYHQVRLYDTRHQR---------------RPVAQFDFLENP--ISSTGL-TPSGNFIYTGNTKGQLAKFDLRGGKLLGC  284 (412)
T ss_pred             ecceeEEEecCcccC---------------cceeEeccccCc--ceeeee-cCCCcEEEEecccchhheecccCceeecc
Confidence             59999999998764               566666655655  999998 89999999999999999999999998776


Q ss_pred             -eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          186 -MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       186 -~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                       +++..+.|+++..+|..++++++|.|+.|||+|+.+..+
T Consensus       285 ~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  285 GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             ccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence             788899999999999999999999999999999998543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=6e-15  Score=130.77  Aligned_cols=236  Identities=10%  Similarity=0.090  Sum_probs=153.4

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcC-CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   79 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~   79 (312)
                      |++||.+.++.-.-|....++        ...|+.+.+-. +...++++++.||.||||+-.....    ...+.+..+.
T Consensus      1088 i~vwd~e~~~~l~~F~n~~~~--------~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~----~~~eLVTaw~ 1155 (1387)
T KOG1517|consen 1088 IRVWDWEKGRLLNGFDNGAFP--------DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW----KKPELVTAWS 1155 (1387)
T ss_pred             EEEEecccCceeccccCCCCC--------CCccceeeeecccchhheeeeccCceEEEeccccccc----CCceeEEeec
Confidence            468888776643334333332        56799998854 3447899999999999997542210    0111222221


Q ss_pred             c-cccccCCCccEEEEEEccCCC-eEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec
Q 021484           80 P-RHLIGKNNIHITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  157 (312)
Q Consensus        80 ~-~~~~~~~~~~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s  157 (312)
                      . .....+..+.-.-+.|..... ++++|.-..|+|||....                .....+..... .-++++.-..
T Consensus      1156 ~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E----------------~~~~diP~~s~-t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1156 SLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKE----------------QVVADIPYGSS-TLVTALSADL 1218 (1387)
T ss_pred             cccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccc----------------eeEeecccCCC-ccceeecccc
Confidence            1 111111111124566776544 555566788999999876                34444432222 2377776644


Q ss_pred             CCCCEEEEeccCceEEEEeccCCe---eEEEeecCccc--eEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCCCCCC-C-
Q 021484          158 PNDEYVMSGSDCGHLFIWKKKGGK---LVRLMVGDRHV--VNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLP-D-  229 (312)
Q Consensus       158 ~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~--v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~-~-  229 (312)
                      ..|+.+++|..||.|++||.+...   .+...+.|+..  |..+.+-++|-. +++|+.||.|++||++.....++. . 
T Consensus      1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred             cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee
Confidence            568999999999999999987543   46677888876  999999998765 999999999999999985332222 1 


Q ss_pred             -Ch--hhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484          230 -NA--EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       230 -~~--~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                       +-  +..++....+.....+++|+. ..++||++...+.
T Consensus      1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL 1337 (1387)
T ss_pred             eccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh
Confidence             11  222445556667778888888 9999999876543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.66  E-value=1e-14  Score=111.86  Aligned_cols=212  Identities=12%  Similarity=0.156  Sum_probs=152.3

Q ss_pred             CCccceEEEEEcCCC----CcEEEEEeCCCeEEEEEccCCe--ecCCCCCCCCcccccccccccCCCccEEEEEEccCC-
Q 021484           28 MNSIRLNAIVIDPRN----PNYFAVGGSDEYARVYDIRKCH--WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-  100 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~----~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  100 (312)
                      .|+-+++.+.|.|+.    +.+|||.+  -.+|+|.+...+  ..        .........-..+..++++..|+.-. 
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~--------~~~~L~~~kns~~~aPlTSFDWne~dp  163 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVE--------LQSVLNNNKNSEFCAPLTSFDWNEVDP  163 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCcee--------hhhhhccCcccccCCcccccccccCCc
Confidence            488999999999964    24666654  589999987432  11        00000111113456789999998755 


Q ss_pred             CeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC
Q 021484          101 ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG  179 (312)
Q Consensus       101 ~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~  179 (312)
                      +++.+++ |.+..|||++++.             .......+-.|...  |..++|.-..-+.+++.+.||.|++||++.
T Consensus       164 ~~igtSSiDTTCTiWdie~~~-------------~~~vkTQLIAHDKE--V~DIaf~~~s~~~FASvgaDGSvRmFDLR~  228 (364)
T KOG0290|consen  164 NLIGTSSIDTTCTIWDIETGV-------------SGTVKTQLIAHDKE--VYDIAFLKGSRDVFASVGADGSVRMFDLRS  228 (364)
T ss_pred             ceeEeecccCeEEEEEEeecc-------------ccceeeEEEecCcc--eeEEEeccCccceEEEecCCCcEEEEEecc
Confidence            5777766 9999999998851             00123445677755  999999332346789999999999999998


Q ss_pred             CeeEEEeecC---ccceEEEEEcCCCC-eEEEEeCC-CcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecC
Q 021484          180 GKLVRLMVGD---RHVVNQLEPHPHIP-MFATCGIE-KTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTP  252 (312)
Q Consensus       180 ~~~~~~~~~~---~~~v~~~~~~p~~~-~l~t~~~d-~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  252 (312)
                      .+.-..+...   ..+...++|+++.. ++||-..| ..|.|-|++..+  +..+.+|...+-...|......-+.+++.
T Consensus       229 leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD  308 (364)
T KOG0290|consen  229 LEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD  308 (364)
T ss_pred             cccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC
Confidence            7665554322   35778899998765 57776655 579999998765  57788899888777765557889999999


Q ss_pred             CceEEEEEeccc
Q 021484          253 DVIMHVLRLQRR  264 (312)
Q Consensus       253 d~~i~i~~~~~~  264 (312)
                      |...-+||+++.
T Consensus       309 D~qaliWDl~q~  320 (364)
T KOG0290|consen  309 DCQALIWDLQQM  320 (364)
T ss_pred             cceEEEEecccc
Confidence            999999999765

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=3.3e-15  Score=123.80  Aligned_cols=169  Identities=17%  Similarity=0.231  Sum_probs=126.5

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--CeEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLI  104 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~  104 (312)
                      -||.+-|+|+.|+.+| .+|++|+.|-.+.|||.-..+              ....+-.+|...|.++.|-|..  ++++
T Consensus        47 ~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~K--------------llhsI~TgHtaNIFsvKFvP~tnnriv~  111 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYK--------------LLHSISTGHTANIFSVKFVPYTNNRIVL  111 (758)
T ss_pred             ccccceecceeecCCC-CEEeecCCcceEEeecchhcc--------------eeeeeecccccceeEEeeeccCCCeEEE
Confidence            3799999999999999 899999999999999998776              3344447999999999999954  4777


Q ss_pred             Ee-cCCcEEEEEcCCCcC-CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCe
Q 021484          105 SY-NDELVYLFEKNMGLG-PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       105 s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~  181 (312)
                      ++ .|..|++||+....+ ..+-.       -......+..|...  |..++- .|++ +.+.++++||+++-+|++...
T Consensus       112 sgAgDk~i~lfdl~~~~~~~~d~~-------~~~~~~~~~cht~r--VKria~-~p~~PhtfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  112 SGAGDKLIKLFDLDSSKEGGMDHG-------MEETTRCWSCHTDR--VKRIAT-APNGPHTFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             eccCcceEEEEecccccccccccC-------ccchhhhhhhhhhh--hhheec-CCCCCceEEEecCCcceeeecccCCc
Confidence            86 599999999975210 00000       00344556677765  888887 6776 789999999999999998632


Q ss_pred             eEE-------Ee---ecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCC
Q 021484          182 LVR-------LM---VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPM  220 (312)
Q Consensus       182 ~~~-------~~---~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~  220 (312)
                      ...       .+   ...--...++..+|...+ |+.|+.|--.++||.+
T Consensus       182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            211       11   111123568899998765 8999999999999954

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.64  E-value=2.2e-14  Score=111.43  Aligned_cols=206  Identities=12%  Similarity=0.193  Sum_probs=150.9

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      ..+|+|.+|+++. ..+|++..+..|.||.....++-            ...+.+..|...|+.+.|+|....|+++ .|
T Consensus        10 ~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w------------~~~htls~Hd~~vtgvdWap~snrIvtcs~d   76 (361)
T KOG1523|consen   10 LEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLW------------EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD   76 (361)
T ss_pred             cCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCc------------eeceehhhhCcceeEEeecCCCCceeEccCC
Confidence            4589999999998 89999999999999998876521            3344448899999999999999888887 59


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee----EE
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL----VR  184 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~----~~  184 (312)
                      ..-++|....+             .+.++.-.+..+...  +++|.| +|.++.+++|+....|.||-+....-    ..
T Consensus        77 rnayVw~~~~~-------------~~WkptlvLlRiNrA--At~V~W-sP~enkFAVgSgar~isVcy~E~ENdWWVsKh  140 (361)
T KOG1523|consen   77 RNAYVWTQPSG-------------GTWKPTLVLLRINRA--ATCVKW-SPKENKFAVGSGARLISVCYYEQENDWWVSKH  140 (361)
T ss_pred             CCccccccCCC-------------CeeccceeEEEeccc--eeeEee-cCcCceEEeccCccEEEEEEEecccceehhhh
Confidence            99999998443             123455555556644  999999 99999999999999999998764221    11


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC----------CC-C-------ChhhhhhhhccCCCCce
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP----------LP-D-------NAEKIMKANKQGREDHS  246 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~----------~~-~-------~~~~~~~~~~~~~~~~~  246 (312)
                      .-+.+...|+++.|+|++-++++|+.|+..|++..--..+..          ++ +       ....-+....+++++..
T Consensus       141 ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~  220 (361)
T KOG1523|consen  141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR  220 (361)
T ss_pred             hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCE
Confidence            223466789999999999999999999999999843221100          00 0       01111122335566777


Q ss_pred             eEEecCCceEEEEEeccc
Q 021484          247 RITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       247 l~s~~~d~~i~i~~~~~~  264 (312)
                      |.=.+.|+.+.+-|-...
T Consensus       221 lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  221 LAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             eeEecCCCceEEeecCCC
Confidence            777778888877775443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.64  E-value=7.8e-15  Score=111.01  Aligned_cols=239  Identities=13%  Similarity=0.147  Sum_probs=157.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++|++++.+....+...          |+..|+.+.--|++  .+.+-+.|+.+.+|++.....+..-.....--.||.
T Consensus        37 V~~w~lqt~r~~~~~r~~----------g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCr  104 (323)
T KOG0322|consen   37 VKMWVLQTERDLPLIRLF----------GRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCR  104 (323)
T ss_pred             EEEEEeecCccchhhhhh----------ccceeeceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeecccccccc
Confidence            578999988877776643          56789999999974  688888999999999976332211000000000010


Q ss_pred             c--------------------------------------ccccCCCccEEEEEEccCC-C--eEEEe-cCCcEEEEEcCC
Q 021484           81 R--------------------------------------HLIGKNNIHITGLAYSNTS-E--LLISY-NDELVYLFEKNM  118 (312)
Q Consensus        81 ~--------------------------------------~~~~~~~~~i~~~~~~~~~-~--~l~s~-~d~~i~iwd~~~  118 (312)
                      .                                      .-..+..+.+.+..+..+. .  +|++| .+|.+.+||+.+
T Consensus       105 fSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~  184 (323)
T KOG0322|consen  105 FSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLST  184 (323)
T ss_pred             ceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccC
Confidence            0                                      0001223456666654433 2  44455 699999999987


Q ss_pred             CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC--ee--EEEeecCccceE
Q 021484          119 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KL--VRLMVGDRHVVN  194 (312)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~--~~~~~~~~~~v~  194 (312)
                      +...  ..+    .+..+.......|..+  |.++.| .+.-..=++|+.+..+.+|+++..  .+  -..+......|.
T Consensus       185 ~~~~--~~~----~~~~kv~~~~ash~qp--vlsldy-as~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~  255 (323)
T KOG0322|consen  185 GDKI--IQL----PQSSKVESPNASHKQP--VLSLDY-ASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVS  255 (323)
T ss_pred             Ccee--ecc----ccccccccchhhccCc--ceeeee-chhhcCCcCCCccccceeeeeccccCcccccceEEecCCCcc
Confidence            6211  000    0111233334456655  999999 655555567888888999987632  22  122222345788


Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          195 QLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       195 ~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .+..-||++.+||++.|+.||||+.++... ..+.-|...+ ....++++...+++++.|..|.+|++
T Consensus       256 gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagv-n~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  256 GVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGV-NAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcce-eEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999998874 5555566555 55668899999999999999999986

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.64  E-value=2.4e-13  Score=113.78  Aligned_cols=202  Identities=12%  Similarity=0.117  Sum_probs=125.0

Q ss_pred             cceEEEEEcCCCCcEEEEE-eCCCeEEEEEccC-CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--
Q 021484           31 IRLNAIVIDPRNPNYFAVG-GSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--  106 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--  106 (312)
                      .....++++|++ +.|+++ ..++.|.+|++.. +.+.            .....  ........++++|++++++++  
T Consensus        35 ~~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~------------~~~~~--~~~~~p~~i~~~~~g~~l~v~~~   99 (330)
T PRK11028         35 GQVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALT------------FAAES--PLPGSPTHISTDHQGRFLFSASY   99 (330)
T ss_pred             CCCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceE------------Eeeee--cCCCCceEEEECCCCCEEEEEEc
Confidence            346788999998 565554 5689999999973 3210            00000  112345689999999977765  


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe-ccCceEEEEeccCCeeEE-
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVR-  184 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~-  184 (312)
                      .++.|.+|++......            .+....+.+..   ....+++ +|++++++++ ..++.|.+||+.+...+. 
T Consensus       100 ~~~~v~v~~~~~~g~~------------~~~~~~~~~~~---~~~~~~~-~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028        100 NANCVSVSPLDKDGIP------------VAPIQIIEGLE---GCHSANI-DPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             CCCeEEEEEECCCCCC------------CCceeeccCCC---cccEeEe-CCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            3899999999642100            01111122211   2567888 8999988654 457999999997633221 


Q ss_pred             ------EeecCccceEEEEEcCCCCeEEEEeC-CCcEEEccCCC--CCC---CC---CCCChh-h-hhhhhccCCCCcee
Q 021484          185 ------LMVGDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPMP--TDF---PP---LPDNAE-K-IMKANKQGREDHSR  247 (312)
Q Consensus       185 ------~~~~~~~~v~~~~~~p~~~~l~t~~~-d~~i~iwd~~~--~~~---~~---~~~~~~-~-~~~~~~~~~~~~~l  247 (312)
                            .... ......++|+|+++++++++. +++|.+|++..  +.+   ..   ++.... . ......++++++++
T Consensus       164 ~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l  242 (330)
T PRK11028        164 QEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL  242 (330)
T ss_pred             cCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence                  1111 234578999999999877775 89999999873  222   11   111100 0 00112356777777


Q ss_pred             EEec-CCceEEEEEeccc
Q 021484          248 ITLT-PDVIMHVLRLQRR  264 (312)
Q Consensus       248 ~s~~-~d~~i~i~~~~~~  264 (312)
                      ++.. .++.+.+|++...
T Consensus       243 yv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        243 YACDRTASLISVFSVSED  260 (330)
T ss_pred             EEecCCCCeEEEEEEeCC
Confidence            7764 4789999998654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.64  E-value=1.1e-14  Score=120.50  Aligned_cols=208  Identities=10%  Similarity=0.091  Sum_probs=150.1

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCcCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGP  122 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~  122 (312)
                      ..|+.++.||.+.+.+-. ++               +...+..|.+.+.+-.|+|+|.-|++ |.||.|++|....    
T Consensus        76 d~~~i~s~DGkf~il~k~-~r---------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG----  135 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS-AR---------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG----  135 (737)
T ss_pred             ceEEEEcCCceEEEeccc-ch---------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc----
Confidence            578888999999988754 33               22223789999999999999996666 5799999998654    


Q ss_pred             CCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC
Q 021484          123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI  202 (312)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~  202 (312)
                                   .+..++.....  .|.|++| .|+.+-++-+. .+.+.|=.+.....+-.+++|.+-|.++.|+|..
T Consensus       136 -------------MLRStl~Q~~~--~v~c~~W-~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s  198 (737)
T KOG1524|consen  136 -------------MLRSTVVQNEE--SIRCARW-APNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS  198 (737)
T ss_pred             -------------hHHHHHhhcCc--eeEEEEE-CCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccc
Confidence                         34444444443  4999999 77766655443 3556666666666677899999999999999999


Q ss_pred             CeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCccceeEeecCCCccCCC
Q 021484          203 PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESD  282 (312)
Q Consensus       203 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~  282 (312)
                      +.+++|++|-..++||-.+..+.+-..|.-++ +...|.++  .++...+-.++++-..+.+ ......+++++..++.+
T Consensus       199 ~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~I-TSva~npd--~~~~v~S~nt~R~~~p~~G-SifnlsWS~DGTQ~a~g  274 (737)
T KOG1524|consen  199 NIIASGGEDFRFKIWDAQGANLFTSAAEEYAI-TSVAFNPE--KDYLLWSYNTARFSSPRVG-SIFNLSWSADGTQATCG  274 (737)
T ss_pred             cceeecCCceeEEeecccCcccccCChhccce-eeeeeccc--cceeeeeeeeeeecCCCcc-ceEEEEEcCCCceeecc
Confidence            99999999999999999888876665566666 44446666  3333333344442222211 22233889999999999


Q ss_pred             CCCCeEEEee
Q 021484          283 EEEGETYLLG  292 (312)
Q Consensus       283 ~~~~~v~~~~  292 (312)
                      ...|.+++.-
T Consensus       275 t~~G~v~~A~  284 (737)
T KOG1524|consen  275 TSTGQLIVAY  284 (737)
T ss_pred             ccCceEEEee
Confidence            8888886653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=1.1e-13  Score=109.48  Aligned_cols=194  Identities=10%  Similarity=0.162  Sum_probs=142.6

Q ss_pred             ceEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  109 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  109 (312)
                      .|--+-|+.   .++|..+.+  +.+++++++.+..+            |...+    ...|.++.++.  +.|+.+-..
T Consensus        48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I------------Ce~~f----pt~IL~VrmNr--~RLvV~Lee  106 (391)
T KOG2110|consen   48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI------------CEIFF----PTSILAVRMNR--KRLVVCLEE  106 (391)
T ss_pred             EEEEeeccc---ceeEEEecCCCceEEEEEcccCceE------------EEEec----CCceEEEEEcc--ceEEEEEcc
Confidence            455666766   355555443  45899998877633            33222    56788888865  466666555


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc-cCCceeeEEEEecCCCCEEEEe--ccCceEEEEeccCCeeEEEe
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSG--SDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~s~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .|+|||+++.                +++.++... .++..+..++. +..+.+++--  ...|.|.+||..+-+++..+
T Consensus       107 ~IyIydI~~M----------------klLhTI~t~~~n~~gl~AlS~-n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I  169 (391)
T KOG2110|consen  107 SIYIYDIKDM----------------KLLHTIETTPPNPKGLCALSP-NNANCYLAYPGSTTSGDVVLFDTINLQPVNTI  169 (391)
T ss_pred             cEEEEecccc----------------eeehhhhccCCCccceEeecc-CCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence            5999999887                676666544 22223666666 6667788753  34789999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCc-EEEccCCCCC-CCCCCCCh-hhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKT-VKLWAPMPTD-FPPLPDNA-EKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~-i~iwd~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      ..|.+.+.+++|+|+|.+|||+|..|+ |||+.+..+. +..++-.. ..-+....+++++.+|.+.+..++|++|.+..
T Consensus       170 ~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  170 NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            999999999999999999999998887 6999988775 45554222 22245556888999999999999999998864

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=5.1e-13  Score=105.66  Aligned_cols=162  Identities=10%  Similarity=0.183  Sum_probs=109.7

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-ecCCCCCCCCcccccccccc-cCCCccEEEEEEccCCCeEEEec-
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH-WYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISYN-  107 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~-  107 (312)
                      ..|+|++|-|.+..-|++|+. +-|.+|.....- ....+.   ...+.+...+. .+| ..|++++|++||..+++++ 
T Consensus       141 rnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~---~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~  215 (445)
T KOG2139|consen  141 RNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIR---MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASF  215 (445)
T ss_pred             cceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccc---cccccchhheeCCCC-ceeeEEEEcCCCCEEeeccc
Confidence            469999999988788888887 458899875322 111000   00111111111 234 6899999999999998864 


Q ss_pred             -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                       |..|.|||..++                ..+.........  ++-+.| +|++.+|++++-|+..++|..........+
T Consensus       216 gsssi~iWdpdtg----------------~~~pL~~~glgg--~slLkw-SPdgd~lfaAt~davfrlw~e~q~wt~erw  276 (445)
T KOG2139|consen  216 GSSSIMIWDPDTG----------------QKIPLIPKGLGG--FSLLKW-SPDGDVLFAATCDAVFRLWQENQSWTKERW  276 (445)
T ss_pred             CcceEEEEcCCCC----------------CcccccccCCCc--eeeEEE-cCCCCEEEEecccceeeeehhcccceecce
Confidence             889999999887                232222122222  788999 999999999999999999965443333344


Q ss_pred             ecCccceEEEEEcCCCCeEE-EEeCCCcEEEcc
Q 021484          187 VGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWA  218 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~-t~~~d~~i~iwd  218 (312)
                      ....+.|...+|+|+|+.|+ +++  |.-++|.
T Consensus       277 ~lgsgrvqtacWspcGsfLLf~~s--gsp~lys  307 (445)
T KOG2139|consen  277 ILGSGRVQTACWSPCGSFLLFACS--GSPRLYS  307 (445)
T ss_pred             eccCCceeeeeecCCCCEEEEEEc--CCceEEE
Confidence            44556999999999999844 444  3444444

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.62  E-value=2.1e-13  Score=117.41  Aligned_cols=203  Identities=19%  Similarity=0.354  Sum_probs=157.8

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccC-CCccEEEEEE-ccCCC-eEE
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-NNIHITGLAY-SNTSE-LLI  104 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~-~~~~~-~l~  104 (312)
                      +|...+.++.|.+.+ ..++.++.|+.+.+|+......             ....+ .. +...+..+.+ ++++. +++
T Consensus        63 ~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  127 (466)
T COG2319          63 GHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEK-------------LIKSL-EGLHDSSVSKLALSSPDGNSILL  127 (466)
T ss_pred             eccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCce-------------eEEEE-eccCCCceeeEEEECCCcceEEe
Confidence            578899999999998 7888888999999999987630             01111 22 1235666666 77777 555


Q ss_pred             E-ec-CCcEEEEEcCC-CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEeccCC
Q 021484          105 S-YN-DELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGG  180 (312)
Q Consensus       105 s-~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~~  180 (312)
                      . +. |+.+.+|+... .                .....+..|...  +..++| +|++.++++++. ++.+++|+...+
T Consensus       128 ~~~~~d~~~~~~~~~~~~----------------~~~~~~~~~~~~--v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  188 (466)
T COG2319         128 ASSSLDGTVKLWDLSTPG----------------KLIRTLEGHSES--VTSLAF-SPDGKLLASGSSLDGTIKLWDLRTG  188 (466)
T ss_pred             ccCCCCccEEEEEecCCC----------------eEEEEEecCccc--EEEEEE-CCCCCEEEecCCCCCceEEEEcCCC
Confidence            4 34 89999999986 4                566777888866  999999 999998888886 999999999988


Q ss_pred             eeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCCC-C-CCCCChhhhhhhhccCCCCceeEEecCCceEE
Q 021484          181 KLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF-P-PLPDNAEKIMKANKQGREDHSRITLTPDVIMH  257 (312)
Q Consensus       181 ~~~~~~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  257 (312)
                      +.+..+.+|...|.+++|+|++. .+++++.|+.|++||...+.. . .+..|.... . ..+.+++.++++++.++.++
T Consensus       189 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~d~~~~  266 (466)
T COG2319         189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-V-SSFSPDGSLLASGSSDGTIR  266 (466)
T ss_pred             ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-e-EeECCCCCEEEEecCCCcEE
Confidence            88899998999999999999998 566658999999998885543 3 355555543 1 14666667888999999999


Q ss_pred             EEEecccCc
Q 021484          258 VLRLQRRQT  266 (312)
Q Consensus       258 i~~~~~~~~  266 (312)
                      +|++.....
T Consensus       267 ~~~~~~~~~  275 (466)
T COG2319         267 LWDLRSSSS  275 (466)
T ss_pred             EeeecCCCc
Confidence            999876543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.6e-13  Score=109.64  Aligned_cols=246  Identities=11%  Similarity=0.129  Sum_probs=164.1

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .+|.+-|+++.|+.++ ++|++|+.|..+++|++...-...   .+.|+....     ..|...|.+++|....+++.++
T Consensus        53 ~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k---~~KPI~~~~-----~~H~SNIF~L~F~~~N~~~~SG  123 (609)
T KOG4227|consen   53 REHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRK---TPKPIGVME-----HPHRSNIFSLEFDLENRFLYSG  123 (609)
T ss_pred             hhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhc---CCCCceecc-----CccccceEEEEEccCCeeEecC
Confidence            3799999999999997 899999999999999987432111   112222211     3466899999999988899997


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-eEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVR  184 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~  184 (312)
                       .+++|.+.|+++.                +.+..+....+.+.|..+.- +|..+.|++.+.++.|.+||.+..+ +..
T Consensus       124 ~~~~~VI~HDiEt~----------------qsi~V~~~~~~~~~VY~m~~-~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~  186 (609)
T KOG4227|consen  124 ERWGTVIKHDIETK----------------QSIYVANENNNRGDVYHMDQ-HPTDNTLIVVTRAKLVSFIDNRDRQNPIS  186 (609)
T ss_pred             CCcceeEeeecccc----------------eeeeeecccCcccceeeccc-CCCCceEEEEecCceEEEEeccCCCCCCc
Confidence             5999999999986                45555543333345999998 8999999999999999999988654 222


Q ss_pred             E--eecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC--------CCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484          185 L--MVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF--------PPLPDNAEKIMKANKQGREDHSRITLTPD  253 (312)
Q Consensus       185 ~--~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  253 (312)
                      .  +.........+.|+|...- |++++..+-+.+||.+.+..        ..++..... .....|++.+..+++....
T Consensus       187 ~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~-~M~~~~~~~G~Q~msiRR~  265 (609)
T KOG4227|consen  187 LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTE-WMGSLWSPSGNQFMSIRRG  265 (609)
T ss_pred             eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchh-hhheeeCCCCCeehhhhcc
Confidence            1  1223356788999998765 78888889999999887541        122221111 1223366777777776665


Q ss_pred             ceEEEEEecccCcc---------cee-------EeecCCCccCCCCCCCeEEEeecCCCCCC
Q 021484          254 VIMHVLRLQRRQTL---------AYR-------ERRYNAADFESDEEEGETYLLGFSDSDAS  299 (312)
Q Consensus       254 ~~i~i~~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  299 (312)
                      ..-..+|+-.....         .|.       ..-.....+.++.+.=.+|+|-+.-..++
T Consensus       266 ~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds  327 (609)
T KOG4227|consen  266 KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDS  327 (609)
T ss_pred             CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccc
Confidence            44444554332111         111       11112334566666666788877554443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=8.3e-14  Score=116.16  Aligned_cols=244  Identities=14%  Similarity=0.140  Sum_probs=167.5

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccc-------------ccccCC-------
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR-------------HLIGKN-------   87 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-------   87 (312)
                      +|+..-+.|..+|+|..++|+|..--.|++||+....+.-....+..+-.|.+.             ..+.-|       
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            478888999999999888899999999999999866543322222222111100             000011       


Q ss_pred             ----CccEEEEEEcc-CCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCE
Q 021484           88 ----NIHITGLAYSN-TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY  162 (312)
Q Consensus        88 ----~~~i~~~~~~~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~  162 (312)
                          ...-..++++. ...+++.++...|+-++++.+                ..+..|......  +.++.. ++...+
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG----------------rfL~P~~~~~~~--lN~v~i-n~~hgL  189 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG----------------RFLNPFETDSGE--LNVVSI-NEEHGL  189 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEcccc----------------cccccccccccc--ceeeee-cCccce
Confidence                11223444443 334667777888999999988                677777766655  888988 899999


Q ss_pred             EEEeccCceEEEEeccCCeeEEEeec------Ccc-----ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCCh
Q 021484          163 VMSGSDCGHLFIWKKKGGKLVRLMVG------DRH-----VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNA  231 (312)
Q Consensus       163 l~~~~~dg~v~iwd~~~~~~~~~~~~------~~~-----~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~  231 (312)
                      |++|+.+|.|-+||.++...+..+..      |.+     .|+++.|+.+|-.++.|..+|.+.|||+++.+......|.
T Consensus       190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~  269 (703)
T KOG2321|consen  190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG  269 (703)
T ss_pred             EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence            99999999999999998777666542      322     4999999999999999999999999999998865555444


Q ss_pred             h--hhhhhhccCCCCceeEEecCCceEEEEEecccCccceeEeecCCCccCCCCCCCeEEE
Q 021484          232 E--KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYL  290 (312)
Q Consensus       232 ~--~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  290 (312)
                      .  ++....|...++.-.+.......++||+-..+.....++...+..++-.-.+.|.+++
T Consensus       270 ~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~  330 (703)
T KOG2321|consen  270 YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFT  330 (703)
T ss_pred             CccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEE
Confidence            3  3444554444444444445567899999777766666666555555444444444443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.60  E-value=5e-14  Score=126.78  Aligned_cols=231  Identities=12%  Similarity=0.129  Sum_probs=151.0

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      .|+..|..++.++....+|++|+.||+|++|+.+.-.-        ....+............+..+.+.+.+..+|.+ 
T Consensus      1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~--------~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG--------EGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             hccccccceeecCCCCceEEEecCCceEEEeeehhhhc--------CcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            37888889998887657999999999999999975431        001111111112246778899999999877776 


Q ss_pred             cCCcEEEEEcCCCcCC-------------------------------------CCCcCCcccccCCCCCceEecccCCce
Q 021484          107 NDELVYLFEKNMGLGP-------------------------------------SPLSLSPEDLQKREEPQVYSGHRNSQT  149 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (312)
                      .||.|.+.++......                                     ....+-.|+.........++.....+.
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence            6999999998762100                                     001122222333233333333333345


Q ss_pred             eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee-cCccceEEEEEcCCCC---e-EEEEe-CCCcEEEccCCCCC
Q 021484          150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIP---M-FATCG-IEKTVKLWAPMPTD  223 (312)
Q Consensus       150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~---~-l~t~~-~d~~i~iwd~~~~~  223 (312)
                      |++++. +|.+++++.|+..|.+.+||++-+.++..+. .+..++..+..+|..+   . +.+++ ..+.|.+|++.++.
T Consensus      1198 vTSi~i-dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1198 VTSIVI-DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             eeEEEe-cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            999998 9999999999999999999999998888875 3446788888877544   4 44444 57889999998764


Q ss_pred             CCC-CCCC-hhhhhh-----------------hhccCCCCceeEEecCCceEEEEEecccCcc
Q 021484          224 FPP-LPDN-AEKIMK-----------------ANKQGREDHSRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       224 ~~~-~~~~-~~~~~~-----------------~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      ... +... ....+.                 .......+..+++++.|..|+.||.......
T Consensus      1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            211 1111 000000                 0011123568889999999999998766444

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.60  E-value=1.5e-14  Score=115.59  Aligned_cols=167  Identities=18%  Similarity=0.281  Sum_probs=127.0

Q ss_pred             CCccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE
Q 021484           87 NNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM  164 (312)
Q Consensus        87 ~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~  164 (312)
                      ...++.++.|.++.. .++++ .|..|++|-+........       -.+.+....+..|...  |+.+.| +|+|..|+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------~~~V~y~s~Ls~H~~a--VN~vRf-~p~gelLA   81 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------DMKVEYLSSLSRHTRA--VNVVRF-SPDGELLA   81 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------ceeEEEeecccCCcce--eEEEEE-cCCcCeee
Confidence            356799999999887 89996 699999999876521100       0111344556677765  999999 99999999


Q ss_pred             EeccCceEEEEecc--------C--------CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC-C
Q 021484          165 SGSDCGHLFIWKKK--------G--------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-L  227 (312)
Q Consensus       165 ~~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-~  227 (312)
                      +|+.+|.|.+|-..        +        ....+.+.+|...|+.++|+|++.++++++.|.++++||+..+.+.. +
T Consensus        82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~  161 (434)
T KOG1009|consen   82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL  161 (434)
T ss_pred             ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec
Confidence            99999999999754        2        12345567899999999999999999999999999999999988644 4


Q ss_pred             CCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          228 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      .+|..-+ ....|.+.+.++++-+.|...+.+.+...
T Consensus       162 ~dh~~yv-qgvawDpl~qyv~s~s~dr~~~~~~~~~~  197 (434)
T KOG1009|consen  162 DDHEHYV-QGVAWDPLNQYVASKSSDRHPEGFSAKLK  197 (434)
T ss_pred             ccccccc-ceeecchhhhhhhhhccCcccceeeeeee
Confidence            4444444 55557787888888888876666665443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.6e-13  Score=102.91  Aligned_cols=188  Identities=13%  Similarity=0.145  Sum_probs=126.9

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE-ccCCCeEEEecCCc
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-SNTSELLISYNDEL  110 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~~d~~  110 (312)
                      .|++|...|.. +-++.++.|+.++.||+++++.              .. .+.+|++.+.++.- +.++++|..+.||+
T Consensus       116 eINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i--------------~r-~~rGHtDYvH~vv~R~~~~qilsG~EDGt  179 (325)
T KOG0649|consen  116 EINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRI--------------QR-EYRGHTDYVHSVVGRNANGQILSGAEDGT  179 (325)
T ss_pred             ccceeEeccCC-CcEEEecCCeEEEEEEecCCEE--------------EE-EEcCCcceeeeeeecccCcceeecCCCcc
Confidence            58999999988 4555555899999999999972              22 23899999999988 55556655568999


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC--------CceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN--------SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  182 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~  182 (312)
                      +++||+++.                +.++.+.....        .+.|.+++   .+..+|++|+ ...+.+|.++..++
T Consensus       180 vRvWd~kt~----------------k~v~~ie~yk~~~~lRp~~g~wigala---~~edWlvCGg-Gp~lslwhLrsse~  239 (325)
T KOG0649|consen  180 VRVWDTKTQ----------------KHVSMIEPYKNPNLLRPDWGKWIGALA---VNEDWLVCGG-GPKLSLWHLRSSES  239 (325)
T ss_pred             EEEEecccc----------------ceeEEeccccChhhcCcccCceeEEEe---ccCceEEecC-CCceeEEeccCCCc
Confidence            999999987                55555543322        12355554   3567777665 57899999999988


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCC-CCceeEEecCCceEEEE
Q 021484          183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVL  259 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~  259 (312)
                      ...+. ..+++..+.|  ....+++++..+.|.-|.+.+.-....+......+... +.. .-..+..++....+.++
T Consensus       240 t~vfp-ipa~v~~v~F--~~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s-~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  240 TCVFP-IPARVHLVDF--VDDCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSAS-WQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             eEEEe-cccceeEeee--ecceEEEeccccceeeeeeccEEEEeccCCccceeeec-ccCCceEEEEecccceeeeee
Confidence            87776 4467788888  44577888888899999887654333332333232222 222 22334444555556655

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=1.6e-14  Score=120.87  Aligned_cols=154  Identities=20%  Similarity=0.334  Sum_probs=122.3

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      .+.|.++.|+|..+ +|++++. ..|+|||+..+.+              ++.+ ......|.+++.+|.|..|+.+ .|
T Consensus       566 kG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqel--------------vKkL-~tg~kwiS~msihp~GDnli~gs~d  628 (733)
T KOG0650|consen  566 KGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQEL--------------VKKL-LTGSKWISSMSIHPNGDNLILGSYD  628 (733)
T ss_pred             CCceeEEEecCCCc-eEEEEec-cceEEEehhHHHH--------------HHHH-hcCCeeeeeeeecCCCCeEEEecCC
Confidence            56799999999884 5555554 7899999987663              2333 2335678999999999755554 69


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc------CC--
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK------GG--  180 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~------~~--  180 (312)
                      +.+..||+.-..               ++.+++..|...  +++|+| ++.-.++++|+.||++.|+.-.      ..  
T Consensus       629 ~k~~WfDldlss---------------kPyk~lr~H~~a--vr~Va~-H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpl  690 (733)
T KOG0650|consen  629 KKMCWFDLDLSS---------------KPYKTLRLHEKA--VRSVAF-HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPL  690 (733)
T ss_pred             CeeEEEEcccCc---------------chhHHhhhhhhh--hhhhhh-ccccceeeeecCCCcEEEEeeeeehhhhcCCc
Confidence            999999997642               677888888866  999999 8999999999999999998621      11  


Q ss_pred             -eeEEEeecCccc----eEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021484          181 -KLVRLMVGDRHV----VNQLEPHPHIPMFATCGIEKTVKLWA  218 (312)
Q Consensus       181 -~~~~~~~~~~~~----v~~~~~~p~~~~l~t~~~d~~i~iwd  218 (312)
                       -++..+++|...    |.++.|||...+|++++.||+|++|.
T Consensus       691 iVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  691 IVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             eEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence             346677888654    89999999999999999999999983

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=6e-13  Score=114.79  Aligned_cols=193  Identities=10%  Similarity=0.080  Sum_probs=122.9

Q ss_pred             ccceEEEEEcCCCCcEEEEEe---CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           30 SIRLNAIVIDPRNPNYFAVGG---SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      ...+.+.+|+|+| +.|+..+   .+..|.+|++.+++...       +         ......+..++|+|+|+.|+..
T Consensus       198 ~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~~-------l---------~~~~~~~~~~~~SPDG~~La~~  260 (429)
T PRK03629        198 PQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQ-------V---------ASFPRHNGAPAFSPDGSKLAFA  260 (429)
T ss_pred             CCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeEE-------c---------cCCCCCcCCeEECCCCCEEEEE
Confidence            4578899999999 5565433   34579999998775210       0         1112234468999999976653


Q ss_pred             -c-CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC-c--eEEEEeccC
Q 021484          107 -N-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKKG  179 (312)
Q Consensus       107 -~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d-g--~v~iwd~~~  179 (312)
                       . ++  .|++||+.++                +. ..+..+...  +....| +|+|+.|+..+.+ +  .|+++|+.+
T Consensus       261 ~~~~g~~~I~~~d~~tg----------------~~-~~lt~~~~~--~~~~~w-SPDG~~I~f~s~~~g~~~Iy~~d~~~  320 (429)
T PRK03629        261 LSKTGSLNLYVMDLASG----------------QI-RQVTDGRSN--NTEPTW-FPDSQNLAYTSDQAGRPQVYKVNING  320 (429)
T ss_pred             EcCCCCcEEEEEECCCC----------------CE-EEccCCCCC--cCceEE-CCCCCEEEEEeCCCCCceEEEEECCC
Confidence             2 44  5899999875                33 333333322  678888 9999988766653 3  455567766


Q ss_pred             CeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCce-
Q 021484          180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVI-  255 (312)
Q Consensus       180 ~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-  255 (312)
                      ++. ..+..+........|+|+|+.++..+.+   ..|.+||+.++....+....  ......+++++..++..+.++. 
T Consensus       321 g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~  397 (429)
T PRK03629        321 GAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMG  397 (429)
T ss_pred             CCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCc
Confidence            654 3343344455678999999998776543   35888999887754443221  1122346788888887776653 


Q ss_pred             --EEEEEec
Q 021484          256 --MHVLRLQ  262 (312)
Q Consensus       256 --i~i~~~~  262 (312)
                        +.++++.
T Consensus       398 ~~l~~~~~~  406 (429)
T PRK03629        398 SVLNLVSTD  406 (429)
T ss_pred             eEEEEEECC
Confidence              4555543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=3.4e-13  Score=106.66  Aligned_cols=207  Identities=15%  Similarity=0.182  Sum_probs=140.5

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEecCC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYNDE  109 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d~  109 (312)
                      .-+..++|++.- ..++++..|-.|++|+-...               ++..+.......|++++|-|.+. .|+.+--+
T Consensus        99 ~dlr~~aWhqH~-~~fava~nddvVriy~ksst---------------~pt~Lks~sQrnvtclawRPlsaselavgCr~  162 (445)
T KOG2139|consen   99 IDLRGVAWHQHI-IAFAVATNDDVVRIYDKSST---------------CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA  162 (445)
T ss_pred             cceeeEeechhh-hhhhhhccCcEEEEeccCCC---------------CCceecchhhcceeEEEeccCCcceeeeeecc
Confidence            357889999955 78899999999999998763               33333344567899999999874 67777778


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEeccCCeeEEEeec
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVG  188 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~  188 (312)
                      -|.+|......   ....... .......+.++... ..+|+++.| .++|..+++++. +..|+|||..++..+.....
T Consensus       163 gIciW~~s~tl---n~~r~~~-~~s~~~~qvl~~pg-h~pVtsmqw-n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~  236 (445)
T KOG2139|consen  163 GICIWSDSRTL---NANRNIR-MMSTHHLQVLQDPG-HNPVTSMQW-NEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK  236 (445)
T ss_pred             eeEEEEcCccc---ccccccc-cccccchhheeCCC-CceeeEEEE-cCCCCEEeecccCcceEEEEcCCCCCccccccc
Confidence            89999875321   0000000 11112333333222 256999999 999999998875 67899999999887655544


Q ss_pred             CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCc-eeEEecCCceEEEEE
Q 021484          189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDH-SRITLTPDVIMHVLR  260 (312)
Q Consensus       189 ~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~i~~  260 (312)
                      ..+.++-+.|||++.+|+++.-|+..++|+..... .....-... -+..+.|+++++ +|++.+....++-..
T Consensus       237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sgsp~lysl~  309 (445)
T KOG2139|consen  237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACSGSPRLYSLT  309 (445)
T ss_pred             CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence            55788899999999999999999999999654332 111111122 345666888655 455666665554443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.57  E-value=5.2e-15  Score=120.18  Aligned_cols=196  Identities=15%  Similarity=0.176  Sum_probs=163.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV  111 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i  111 (312)
                      +-+.+.++.+| +.++.|+.-|.|..+|..++++..++            .    -...|.++.|-.+.+++|.+....+
T Consensus       131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~Ei------------~----v~Etv~Dv~~LHneq~~AVAQK~y~  193 (545)
T KOG1272|consen  131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFEI------------N----VMETVRDVTFLHNEQFFAVAQKKYV  193 (545)
T ss_pred             CCeeeeecCCc-cEEEecCCccceeeeecccceeeeee------------e----hhhhhhhhhhhcchHHHHhhhhceE
Confidence            45778999999 89999999999999999999865321            1    1456888999999999999999999


Q ss_pred             EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCcc
Q 021484          112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  191 (312)
Q Consensus       112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  191 (312)
                      +|||-..-                 .+.-++.+.   .|..+.| -|..-+|++++..|.++.-|+.+|+.+..+....+
T Consensus       194 yvYD~~Gt-----------------ElHClk~~~---~v~rLeF-LPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G  252 (545)
T KOG1272|consen  194 YVYDNNGT-----------------ELHCLKRHI---RVARLEF-LPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG  252 (545)
T ss_pred             EEecCCCc-----------------EEeehhhcC---chhhhcc-cchhheeeecccCCceEEEeechhhhhHHHHccCC
Confidence            99997542                 333444332   2889999 68888899999999999999999999999988888


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484          192 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       192 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      .+..++-+|-+..+-+|...|+|.+|.+.+.+. ..+..|..++ ....+.+.+.+++|.+.|..++|||++....
T Consensus       253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V-~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q  327 (545)
T KOG1272|consen  253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPV-SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ  327 (545)
T ss_pred             ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCc-ceEEECCCCcEEeecccccceeEeeeccccc
Confidence            999999999999999999999999999998874 4455566666 5555888999999999999999999987653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=8.7e-13  Score=114.24  Aligned_cols=194  Identities=10%  Similarity=0.067  Sum_probs=121.1

Q ss_pred             CccceEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE-
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-  104 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-  104 (312)
                      |...+.+.+|+|++ +.|+..+.   +..|++||+.+++..               .+ ..........+|+|+|+.|+ 
T Consensus       202 ~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SpDG~~l~~  264 (433)
T PRK04922        202 SAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQRE---------------LV-ASFRGINGAPSFSPDGRRLAL  264 (433)
T ss_pred             CCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEE---------------Ee-ccCCCCccCceECCCCCEEEE
Confidence            45578899999999 56666553   346999999877521               11 12233345789999998654 


Q ss_pred             Ee-cCC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEecc
Q 021484          105 SY-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKK  178 (312)
Q Consensus       105 s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~  178 (312)
                      +. .++  .|++||+.++                + .+.+..+...  ....+| +|++++|+..+. +|  .|+++++.
T Consensus       265 ~~s~~g~~~Iy~~d~~~g----------------~-~~~lt~~~~~--~~~~~~-spDG~~l~f~sd~~g~~~iy~~dl~  324 (433)
T PRK04922        265 TLSRDGNPEIYVMDLGSR----------------Q-LTRLTNHFGI--DTEPTW-APDGKSIYFTSDRGGRPQIYRVAAS  324 (433)
T ss_pred             EEeCCCCceEEEEECCCC----------------C-eEECccCCCC--ccceEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence            33 344  6999999876                2 3334444322  567888 999998877654 44  47777777


Q ss_pred             CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC--
Q 021484          179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD--  253 (312)
Q Consensus       179 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--  253 (312)
                      +++... +..+......++|+|+|+.++..+.++   .|.+||+.++....+.... .. ....++++++.++..+.+  
T Consensus       325 ~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~-~~-~~p~~spdG~~i~~~s~~~g  401 (433)
T PRK04922        325 GGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS-LD-ESPSFAPNGSMVLYATREGG  401 (433)
T ss_pred             CCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC-CC-CCceECCCCCEEEEEEecCC
Confidence            665432 322333445789999999987765433   6999999887654443221 11 122467777766554432  


Q ss_pred             -ceEEEEEec
Q 021484          254 -VIMHVLRLQ  262 (312)
Q Consensus       254 -~~i~i~~~~  262 (312)
                       +.+.++++.
T Consensus       402 ~~~L~~~~~~  411 (433)
T PRK04922        402 RGVLAAVSTD  411 (433)
T ss_pred             ceEEEEEECC
Confidence             345555543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.56  E-value=5.7e-14  Score=116.20  Aligned_cols=170  Identities=18%  Similarity=0.227  Sum_probs=117.8

Q ss_pred             CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eEEEecCCcEEEEEcC
Q 021484           40 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISYNDELVYLFEKN  117 (312)
Q Consensus        40 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~d~~i~iwd~~  117 (312)
                      |.+ .-+++|-.-|.+.+.|....+.....         ....  .-.+..++++.|-|.+.  +|++-.+|.+++||..
T Consensus       183 ~~g-~dllIGf~tGqvq~idp~~~~~sklf---------ne~r--~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~  250 (636)
T KOG2394|consen  183 PKG-LDLLIGFTTGQVQLIDPINFEVSKLF---------NEER--LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE  250 (636)
T ss_pred             CCC-cceEEeeccCceEEecchhhHHHHhh---------hhcc--cccccceEEEEEEeCCCceEEEEEecCceEEeecc
Confidence            444 56788888899998887753321111         1111  11247899999999775  5555579999999875


Q ss_pred             CCcC---CCCCcCCccc---------ccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          118 MGLG---PSPLSLSPED---------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       118 ~~~~---~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                      ....   +..+.++..+         ..+..++..+.--..  .|...+| +|+|++||+.+.||.++|||+.+.+++..
T Consensus       251 ~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g--~in~f~F-S~DG~~LA~VSqDGfLRvF~fdt~eLlg~  327 (636)
T KOG2394|consen  251 IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEG--SINEFAF-SPDGKYLATVSQDGFLRIFDFDTQELLGV  327 (636)
T ss_pred             ccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccc--cccceeE-cCCCceEEEEecCceEEEeeccHHHHHHH
Confidence            4321   1112111111         011122222222222  3888998 89999999999999999999998888777


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      ++.--+...|++|+|||+++++|++|-.|.||.+...++
T Consensus       328 mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV  366 (636)
T KOG2394|consen  328 MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV  366 (636)
T ss_pred             HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceE
Confidence            776668899999999999999999999999999876653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=2e-12  Score=112.17  Aligned_cols=182  Identities=10%  Similarity=0.064  Sum_probs=118.3

Q ss_pred             CccceEEEEEcCCCCcEEEEEe---CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE-
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGG---SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-  104 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-  104 (312)
                      |...+.+.+|+|++ +.|+..+   .+..|++||+.+++..               .+ ..+...+...+|+|+|+.|+ 
T Consensus       200 ~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SPDG~~la~  262 (435)
T PRK05137        200 GSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRE---------------LV-GNFPGMTFAPRFSPDGRKVVM  262 (435)
T ss_pred             CCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEE---------------Ee-ecCCCcccCcEECCCCCEEEE
Confidence            56689999999999 5665554   3468999999877521               11 23345667889999998655 


Q ss_pred             Ee-cCC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-C--ceEEEEecc
Q 021484          105 SY-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKK  178 (312)
Q Consensus       105 s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-d--g~v~iwd~~  178 (312)
                      +. .++  .|++||+.++                 ..+.+..+...  .....| +|+|+.|+..+. +  ..|+++|+.
T Consensus       263 ~~~~~g~~~Iy~~d~~~~-----------------~~~~Lt~~~~~--~~~~~~-spDG~~i~f~s~~~g~~~Iy~~d~~  322 (435)
T PRK05137        263 SLSQGGNTDIYTMDLRSG-----------------TTTRLTDSPAI--DTSPSY-SPDGSQIVFESDRSGSPQLYVMNAD  322 (435)
T ss_pred             EEecCCCceEEEEECCCC-----------------ceEEccCCCCc--cCceeE-cCCCCEEEEEECCCCCCeEEEEECC
Confidence            43 344  4888888775                 33444444432  567888 999998887653 3  368888987


Q ss_pred             CCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEe
Q 021484          179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITL  250 (312)
Q Consensus       179 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  250 (312)
                      +++. ..+..+...+....|+|+|+.++..+.+   ..|.+|++.++....+... .. .....|+++++.++..
T Consensus       323 g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~-~~-~~~p~~spDG~~i~~~  394 (435)
T PRK05137        323 GSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG-FL-VEGPTWAPNGRVIMFF  394 (435)
T ss_pred             CCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC-CC-CCCCeECCCCCEEEEE
Confidence            6654 3443344556778999999998877643   3688889866554333211 11 2333466676665543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=2.7e-13  Score=118.22  Aligned_cols=218  Identities=16%  Similarity=0.244  Sum_probs=152.4

Q ss_pred             CCCccceEEEEEcCCCC--cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc------------------------
Q 021484           27 PMNSIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP------------------------   80 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------------------   80 (312)
                      .+|..+++.+.+.|...  .++.+.+.||.|++||...+.+..+.....++.....                        
T Consensus        54 ~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~  133 (792)
T KOG1963|consen   54 EDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTF  133 (792)
T ss_pred             ccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeec
Confidence            45889999999999765  4667899999999999998887654433222211100                        


Q ss_pred             --------------------cccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCce
Q 021484           81 --------------------RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV  140 (312)
Q Consensus        81 --------------------~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  140 (312)
                                          ..+...|.. -.+|.+++.|++.....+..+.+|+.....            ........
T Consensus       134 s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~------------~~~~~~~~  200 (792)
T KOG1963|consen  134 SKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT------------KHTSSRDI  200 (792)
T ss_pred             ccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccc------------eeeccchh
Confidence                                000111222 345667777776666677788888887641            00000011


Q ss_pred             EecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC----CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484          141 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL  216 (312)
Q Consensus       141 ~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~i  216 (312)
                      -..|.-  .+++.++ +|+++++++|..||+|.+|.-..    ......+.=|...|++++|+++|.+|++|+.+|.+-+
T Consensus       201 ~~~Htf--~~t~~~~-spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~  277 (792)
T KOG1963|consen  201 TVHHTF--NITCVAL-SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVL  277 (792)
T ss_pred             hhhhcc--cceeEEe-ccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEE
Confidence            112332  2788998 99999999999999999996322    2234556668889999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          217 WAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       217 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      |.+.+++..-++ ..+.++....+++++.+......|+.+.+...
T Consensus       278 Wq~~T~~kqfLP-RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  278 WQLETGKKQFLP-RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             EeecCCCccccc-ccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            999999854444 44444444457888888888889999998875

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.54  E-value=4.4e-12  Score=106.22  Aligned_cols=202  Identities=10%  Similarity=0.107  Sum_probs=125.1

Q ss_pred             ceEEEEEcCCCCcEEEEE-eCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e-cC
Q 021484           32 RLNAIVIDPRNPNYFAVG-GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-ND  108 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d  108 (312)
                      ....++|+|++ ++++++ ..++.|.+|++.+.....     ..+.      . ..+......++++|+++++++ . .+
T Consensus        81 ~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~-----~~~~------~-~~~~~~~~~~~~~p~g~~l~v~~~~~  147 (330)
T PRK11028         81 SPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPV-----APIQ------I-IEGLEGCHSANIDPDNRTLWVPCLKE  147 (330)
T ss_pred             CceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCC-----Ccee------e-ccCCCcccEeEeCCCCCEEEEeeCCC
Confidence            45689999999 555555 458999999997432100     0000      0 112234567889999987655 4 48


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCC----ceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEeccC--Ce
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEP----QVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKG--GK  181 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~--~~  181 (312)
                      +.|.+||+.+..               .+.    ........ .....++| +|++++++++.. ++.|.+|++..  ++
T Consensus       148 ~~v~v~d~~~~g---------------~l~~~~~~~~~~~~g-~~p~~~~~-~pdg~~lyv~~~~~~~v~v~~~~~~~~~  210 (330)
T PRK11028        148 DRIRLFTLSDDG---------------HLVAQEPAEVTTVEG-AGPRHMVF-HPNQQYAYCVNELNSSVDVWQLKDPHGE  210 (330)
T ss_pred             CEEEEEEECCCC---------------cccccCCCceecCCC-CCCceEEE-CCCCCEEEEEecCCCEEEEEEEeCCCCC
Confidence            999999997631               110    11111111 12578898 899999988876 99999999973  32


Q ss_pred             --eEEEeecCc------cceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCC-CCCCCCChh--hhhhhhccCCCCceeEE
Q 021484          182 --LVRLMVGDR------HVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD-FPPLPDNAE--KIMKANKQGREDHSRIT  249 (312)
Q Consensus       182 --~~~~~~~~~------~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~l~s  249 (312)
                        .+..+..+.      .....+.++|++++++++. .++.|.+|++.... ...+.++..  .......++++++++++
T Consensus       211 ~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~v  290 (330)
T PRK11028        211 IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIA  290 (330)
T ss_pred             EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEE
Confidence              233332211      1234688999999988875 47899999985432 111111111  11122345677777776


Q ss_pred             ec-CCceEEEEEecc
Q 021484          250 LT-PDVIMHVLRLQR  263 (312)
Q Consensus       250 ~~-~d~~i~i~~~~~  263 (312)
                      .. .++.+.+|++..
T Consensus       291 a~~~~~~v~v~~~~~  305 (330)
T PRK11028        291 AGQKSHHISVYEIDG  305 (330)
T ss_pred             EEccCCcEEEEEEcC
Confidence            55 488999998764

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.54  E-value=2.2e-13  Score=120.74  Aligned_cols=196  Identities=16%  Similarity=0.131  Sum_probs=150.4

Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-CCcEEEE
Q 021484           36 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLF  114 (312)
Q Consensus        36 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iw  114 (312)
                      ..+.-.+ ..++.++.+..+.+||...+.+...+...+...           -....-+-++++.-+++++. -+.|.+|
T Consensus        93 ~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-----------l~~~~~~g~s~~~~~i~~gsv~~~iivW  160 (967)
T KOG0974|consen   93 AKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-----------LYSSLIIGDSAEELYIASGSVFGEIIVW  160 (967)
T ss_pred             cchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEE-----------EEeEEEEeccCcEEEEEeccccccEEEE
Confidence            3344444 678888899999999998776443322211111           01122334455555788874 9999999


Q ss_pred             EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE-EeecCccce
Q 021484          115 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVV  193 (312)
Q Consensus       115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v  193 (312)
                      +....                +....+.+|.+.  +.++.| +.+|.++++.++|.++++|++.+.+... ..-+|+.+|
T Consensus       161 ~~~~d----------------n~p~~l~GHeG~--iF~i~~-s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv  221 (967)
T KOG0974|consen  161 KPHED----------------NKPIRLKGHEGS--IFSIVT-SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARV  221 (967)
T ss_pred             ecccc----------------CCcceecccCCc--eEEEEE-ccCCcEEEEEecCcceeeeecccccccCccccccccee
Confidence            98743                233368899977  999999 9999999999999999999999988766 566899999


Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          194 NQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       194 ~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ..++|+|+  .++|++.|.+.++|+.....+..+.+|...-+-....+.+...++|++.|+.+++|++...
T Consensus       222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  222 WACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            99999999  9999999999999988877777777777666555556778889999999999999987543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=7.5e-13  Score=117.79  Aligned_cols=200  Identities=13%  Similarity=0.149  Sum_probs=140.3

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEe-cCCcE
Q 021484           34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDELV  111 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~~i  111 (312)
                      .-+.|..+.+ .|++++.-..|+|||....++              ...+..+....|+++.-+- .|.++++| .||.|
T Consensus      1169 ~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~--------------~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsv 1233 (1387)
T KOG1517|consen 1169 LVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQV--------------VADIPYGSSTLVTALSADLVHGNIIAAGFADGSV 1233 (1387)
T ss_pred             eeeehhhhCC-eEEecCCeeEEEEEeccccee--------------EeecccCCCccceeecccccCCceEEEeecCCce
Confidence            4567877764 455555579999999987763              2333334455566665443 35778776 79999


Q ss_pred             EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCC-EEEEeccCceEEEEeccCCeeE--EEeec
Q 021484          112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLV--RLMVG  188 (312)
Q Consensus       112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~--~~~~~  188 (312)
                      ++||.+....             -..+..++.|.....|..+.+ .+.|- .|++|+.+|.|++||++.....  ..+..
T Consensus      1234 RvyD~R~a~~-------------ds~v~~~R~h~~~~~Iv~~sl-q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1234 RVYDRRMAPP-------------DSLVCVYREHNDVEPIVHLSL-QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred             EEeecccCCc-------------cccceeecccCCcccceeEEe-ecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence            9999987510             035566777876556888888 55443 5999999999999999864222  22333


Q ss_pred             Cc--c-ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCC------hhhhhhhhccCCCCceeEEecCCceEEEE
Q 021484          189 DR--H-VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDN------AEKIMKANKQGREDHSRITLTPDVIMHVL  259 (312)
Q Consensus       189 ~~--~-~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~s~~~d~~i~i~  259 (312)
                      |.  + ..+++..|+..+.+|+|+. +.|+||++.+..+..+..+      ......+..+++-.-.+++|+.|+.|.++
T Consensus      1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred             ccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence            33  3 4899999999999999998 9999999988765444322      22223455566767788889999999998


Q ss_pred             Eecc
Q 021484          260 RLQR  263 (312)
Q Consensus       260 ~~~~  263 (312)
                      ....
T Consensus      1379 s~~k 1382 (1387)
T KOG1517|consen 1379 SCEK 1382 (1387)
T ss_pred             ecCC
Confidence            7543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=1.6e-13  Score=110.29  Aligned_cols=165  Identities=13%  Similarity=0.154  Sum_probs=121.7

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC---C-eE
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---E-LL  103 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~-~l  103 (312)
                      .|...|.++.|+|++ .+|++-+.| ..+||+.+++..+...         .+    .........+.|+.++   . ++
T Consensus       184 ~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~---------t~----~~k~~~~~~cRF~~d~~~~~l~l  248 (398)
T KOG0771|consen  184 AHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARK---------TP----FSKDEMFSSCRFSVDNAQETLRL  248 (398)
T ss_pred             hhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhc---------CC----cccchhhhhceecccCCCceEEE
Confidence            488999999999999 899999998 9999999998532221         11    1223445567777766   2 44


Q ss_pred             EEe-c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe
Q 021484          104 ISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       104 ~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~  181 (312)
                      ++. . -+.|+.|++....+...          .+..+....+   +.|++++. +++|++++.|+.||.|.|++..+.+
T Consensus       249 aa~~~~~~~v~~~~~~~w~~~~~----------l~~~~~~~~~---~siSsl~V-S~dGkf~AlGT~dGsVai~~~~~lq  314 (398)
T KOG0771|consen  249 AASQFPGGGVRLCDISLWSGSNF----------LRLRKKIKRF---KSISSLAV-SDDGKFLALGTMDGSVAIYDAKSLQ  314 (398)
T ss_pred             EEecCCCCceeEEEeeeeccccc----------cchhhhhhcc---CcceeEEE-cCCCcEEEEeccCCcEEEEEeceee
Confidence            443 3 66788887765421100          0111122222   23899998 9999999999999999999999888


Q ss_pred             eEEEe-ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          182 LVRLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       182 ~~~~~-~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                      .+... +.|...|+.+.|+|+.+++++.+.|.++.|..+.-
T Consensus       315 ~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  315 RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            87766 47999999999999999999999999999988765

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.53  E-value=4.9e-12  Score=98.51  Aligned_cols=158  Identities=15%  Similarity=0.200  Sum_probs=115.6

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-eecCCCCCCCCcccccccccccCCCccEEEEEEccCC--CeEEE-
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLIS-  105 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s-  105 (312)
                      ..+|.++.+.++   .+++. ..+.|++|...+. +...         .+  ..  ........  +..|..  .+||. 
T Consensus        94 ~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~---------~~--et--~~NPkGlC--~~~~~~~k~~LafP  154 (346)
T KOG2111|consen   94 NSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLH---------VI--ET--RSNPKGLC--SLCPTSNKSLLAFP  154 (346)
T ss_pred             ccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhhee---------ee--ec--ccCCCceE--eecCCCCceEEEcC
Confidence            568999999985   34444 3578999998732 2111         00  00  11122222  334432  36666 


Q ss_pred             e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCce-EEEEeccCCeeE
Q 021484          106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLV  183 (312)
Q Consensus       106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~-v~iwd~~~~~~~  183 (312)
                      + .-|+|+|-|+....              ......+..|...  |.+++. +.+|..+|+++..|+ |+|||..+|.++
T Consensus       155 g~k~GqvQi~dL~~~~--------------~~~p~~I~AH~s~--Iacv~L-n~~Gt~vATaStkGTLIRIFdt~~g~~l  217 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTK--------------PNAPSIINAHDSD--IACVAL-NLQGTLVATASTKGTLIRIFDTEDGTLL  217 (346)
T ss_pred             CCccceEEEEEhhhcC--------------cCCceEEEcccCc--eeEEEE-cCCccEEEEeccCcEEEEEEEcCCCcEe
Confidence            4 38999999997651              0134778889977  999998 999999999999887 799999999999


Q ss_pred             EEeecC--ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          184 RLMVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       184 ~~~~~~--~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      .+++..  ...|++++|||+..+||.+|.-|+|.|+.++...
T Consensus       218 ~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  218 QELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             eeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            998743  3579999999999999999999999999987644

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.52  E-value=1.7e-14  Score=117.21  Aligned_cols=188  Identities=14%  Similarity=0.241  Sum_probs=145.2

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE  109 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~  109 (312)
                      ..|.++.|-.+. ++||++ ....++|||-..-++-            |.    .. ...|..+.|-|..-+|+++ ..|
T Consensus       171 Etv~Dv~~LHne-q~~AVA-QK~y~yvYD~~GtElH------------Cl----k~-~~~v~rLeFLPyHfLL~~~~~~G  231 (545)
T KOG1272|consen  171 ETVRDVTFLHNE-QFFAVA-QKKYVYVYDNNGTELH------------CL----KR-HIRVARLEFLPYHFLLVAASEAG  231 (545)
T ss_pred             hhhhhhhhhcch-HHHHhh-hhceEEEecCCCcEEe------------eh----hh-cCchhhhcccchhheeeecccCC
Confidence            357788887765 566655 6688999997654422            22    22 2457889999987788886 589


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  189 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  189 (312)
                      .++.-|+..+                +.+..+....+.  +..++- +|-.-.+-+|...|+|.+|.....+++..+..|
T Consensus       232 ~L~Y~DVS~G----------------klVa~~~t~~G~--~~vm~q-NP~NaVih~GhsnGtVSlWSP~skePLvKiLcH  292 (545)
T KOG1272|consen  232 FLKYQDVSTG----------------KLVASIRTGAGR--TDVMKQ-NPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCH  292 (545)
T ss_pred             ceEEEeechh----------------hhhHHHHccCCc--cchhhc-CCccceEEEcCCCceEEecCCCCcchHHHHHhc
Confidence            9999999998                787777766654  666766 888899999999999999999999999999999


Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       190 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      .++|.++++.|+|+|++|.+.|..++|||++... +.++..  ...  ....+.....+++.+....+.+|.
T Consensus       293 ~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~--a~~ls~SqkglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  293 RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHP--ASNLSLSQKGLLALSYGDHVQIWK  360 (545)
T ss_pred             CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCC--ccccccccccceeeecCCeeeeeh
Confidence            9999999999999999999999999999999865 333321  111  111333456788888899999995

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2.5e-13  Score=108.54  Aligned_cols=179  Identities=13%  Similarity=0.145  Sum_probs=132.5

Q ss_pred             ccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEE
Q 021484           76 DTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  154 (312)
Q Consensus        76 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  154 (312)
                      +.||.+.+ .+|.+.|.+|.|+.++++|+++ .|..+++|++...-.          -.+.+++. +.+|.....|.+++
T Consensus        45 R~~~qKD~-~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~----------~k~~KPI~-~~~~~H~SNIF~L~  112 (609)
T KOG4227|consen   45 RPFCQKDV-REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV----------RKTPKPIG-VMEHPHRSNIFSLE  112 (609)
T ss_pred             cchhhhhh-hhhccccceeeeccCCeEEeecCCcceeeeechHHHHh----------hcCCCCce-eccCccccceEEEE
Confidence            44555555 7899999999999999999997 589999999864200          00002333 33444434599999


Q ss_pred             EecCCCCEEEEeccCceEEEEeccCCeeEEEeec--CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-C--CCCCC
Q 021484          155 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-F--PPLPD  229 (312)
Q Consensus       155 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~--~~~~~  229 (312)
                      | +....++++|..+++|...|+.+.+.+..+..  ..+.|+.+..+|..+.|++.+.++.|.+||.+... .  ..++.
T Consensus       113 F-~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A  191 (609)
T KOG4227|consen  113 F-DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA  191 (609)
T ss_pred             E-ccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec
Confidence            9 88899999999999999999999988877652  23589999999999999999999999999987654 1  11223


Q ss_pred             ChhhhhhhhccCC-CCceeEEecCCceEEEEEecccCcc
Q 021484          230 NAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       230 ~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      .....+..+.+.+ +..++++.+..+-+-+||++..+..
T Consensus       192 N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~  230 (609)
T KOG4227|consen  192 NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP  230 (609)
T ss_pred             CCCccceeeeecCCCceeEEeccccCCCCceeeccccch
Confidence            3333344444556 5677888888888999998765433

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.50  E-value=2e-12  Score=98.84  Aligned_cols=151  Identities=15%  Similarity=0.154  Sum_probs=104.0

Q ss_pred             EEEEEccCCCeEEE-ec---C-------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC
Q 021484           92 TGLAYSNTSELLIS-YN---D-------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND  160 (312)
Q Consensus        92 ~~~~~~~~~~~l~s-~~---d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~  160 (312)
                      ..+.|+|+|.+|+. ..   |       +...+|.++...               .....+.-... .+|.+++| +|++
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~---------------~~~~~i~l~~~-~~I~~~~W-sP~g   71 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN---------------IPVESIELKKE-GPIHDVAW-SPNG   71 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC---------------CccceeeccCC-CceEEEEE-CcCC
Confidence            46889999986554 22   2       224455553221               23333433222 23999999 9999


Q ss_pred             CEEEEe--ccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEccCCCCCCCCCCCChhhhh
Q 021484          161 EYVMSG--SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPLPDNAEKIM  235 (312)
Q Consensus       161 ~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~  235 (312)
                      +.|++.  ..++.|.+||++ ++.+..+.  ...++.+.|+|+|++|++++.   .|.|.+||.+..+......+..  .
T Consensus        72 ~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~--~  146 (194)
T PF08662_consen   72 NEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD--A  146 (194)
T ss_pred             CEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc--E
Confidence            987544  467899999997 67676664  457789999999999998874   4679999999766433222333  3


Q ss_pred             hhhccCCCCceeEEecC------CceEEEEEeccc
Q 021484          236 KANKQGREDHSRITLTP------DVIMHVLRLQRR  264 (312)
Q Consensus       236 ~~~~~~~~~~~l~s~~~------d~~i~i~~~~~~  264 (312)
                      ....|+++++++++.+.      |..++||++...
T Consensus       147 t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  147 TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            45679999999998764      688899997543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.50  E-value=1.8e-12  Score=101.50  Aligned_cols=212  Identities=16%  Similarity=0.093  Sum_probs=132.7

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec--
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--  107 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--  107 (312)
                      ..++.+++|+|+|..+|.+..-+-.|.+|.+.+.+....                ......+..++|+|+|++.+..+  
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~----------------~~pK~~~kg~~f~~dg~f~ai~sRr  154 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL----------------PHPKTNVKGYAFHPDGQFCAILSRR  154 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe----------------cccccCceeEEECCCCceeeeeecc
Confidence            568999999999988888889999999999998763211                12233456778888887665542  


Q ss_pred             CCc--E-----------EEEEcCCCc------CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc
Q 021484          108 DEL--V-----------YLFEKNMGL------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD  168 (312)
Q Consensus       108 d~~--i-----------~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~  168 (312)
                      |-.  +           +-+++.+-.      .|....+-+|+..  -..+.+.-+.+ -.+..++| +|.+++|+.|+.
T Consensus       155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~--Leykv~aYe~~-lG~k~v~w-sP~~qflavGsy  230 (447)
T KOG4497|consen  155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV--LEYKVYAYERG-LGLKFVEW-SPCNQFLAVGSY  230 (447)
T ss_pred             cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch--hhheeeeeeec-cceeEEEe-ccccceEEeecc
Confidence            322  1           111111110      1222222222211  01111112221 12888999 999999999999


Q ss_pred             CceEEEEeccCCeeEE------------------------------------------------------------Eee-
Q 021484          169 CGHLFIWKKKGGKLVR------------------------------------------------------------LMV-  187 (312)
Q Consensus       169 dg~v~iwd~~~~~~~~------------------------------------------------------------~~~-  187 (312)
                      |+.+++.+--+-++..                                                            .++ 
T Consensus       231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp  310 (447)
T KOG4497|consen  231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP  310 (447)
T ss_pred             chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence            9999886633222110                                                            111 


Q ss_pred             -----cCccceEEEEEcCCCCeEEEEe--CCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          188 -----GDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       188 -----~~~~~v~~~~~~p~~~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                           .....+.-++|++|..+++|-.  .-..+-+||++..++..+.....++. ...|.+....|+.......+++|.
T Consensus       311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pir-af~WdP~~prL~vctg~srLY~W~  389 (447)
T KOG4497|consen  311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIR-AFEWDPGRPRLVVCTGKSRLYFWA  389 (447)
T ss_pred             CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcccee-EEEeCCCCceEEEEcCCceEEEEc
Confidence                 0112456689999999998876  33679999999988766654555553 444778777777777778899997


Q ss_pred             ec
Q 021484          261 LQ  262 (312)
Q Consensus       261 ~~  262 (312)
                      ..
T Consensus       390 ps  391 (447)
T KOG4497|consen  390 PS  391 (447)
T ss_pred             CC
Confidence            54

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.49  E-value=7.5e-13  Score=103.03  Aligned_cols=158  Identities=14%  Similarity=0.146  Sum_probs=127.6

Q ss_pred             CccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe
Q 021484           88 NIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  166 (312)
Q Consensus        88 ~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~  166 (312)
                      ..+|++.+|++++..+|.+ ....|.||...+..             ..+...++..|...  |+.++| +|..+.|++|
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-------------~w~~~htls~Hd~~--vtgvdW-ap~snrIvtc   73 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-------------LWEPAHTLSEHDKI--VTGVDW-APKSNRIVTC   73 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCC-------------CceeceehhhhCcc--eeEEee-cCCCCceeEc
Confidence            5689999999999988887 67899999887651             12567778888865  999999 9999999999


Q ss_pred             ccCceEEEEec-cCC--eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC----CCCCCChhhhhhhhc
Q 021484          167 SDCGHLFIWKK-KGG--KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF----PPLPDNAEKIMKANK  239 (312)
Q Consensus       167 ~~dg~v~iwd~-~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~  239 (312)
                      +.|..-++|.. ..+  ++...+..+...++++.|+|.++.||+|+..+.|.||-++.+.-    +.+.......+....
T Consensus        74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld  153 (361)
T KOG1523|consen   74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD  153 (361)
T ss_pred             cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence            99999999998 333  44555667888999999999999999999999999999887651    222222333345666


Q ss_pred             cCCCCceeEEecCCceEEEEEe
Q 021484          240 QGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       240 ~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      |++++-+|++|+.|+..+++..
T Consensus       154 WhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  154 WHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             ccCCcceecccccCcceeEEEE
Confidence            8999999999999999999964

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=5.2e-12  Score=109.07  Aligned_cols=185  Identities=11%  Similarity=0.045  Sum_probs=113.5

Q ss_pred             CccceEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      +...+.+.+|+|++ +.|+..+.   ...|.+||+.+++..               .+ ......+...+|+|+|+.|+.
T Consensus       194 ~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SPDG~~la~  256 (427)
T PRK02889        194 SPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRR---------------VV-ANFKGSNSAPAWSPDGRTLAV  256 (427)
T ss_pred             CCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEE---------------Ee-ecCCCCccceEECCCCCEEEE
Confidence            46678999999999 66665543   245999999877521               01 112334567899999986654


Q ss_pred             -e-cCCcEEEE--EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEe--cc
Q 021484          106 -Y-NDELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWK--KK  178 (312)
Q Consensus       106 -~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd--~~  178 (312)
                       . .++...+|  |+.++                 ..+.+..+...  .....| +|+|+.|+..+. +|...+|.  +.
T Consensus       257 ~~~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~w-SpDG~~l~f~s~~~g~~~Iy~~~~~  316 (427)
T PRK02889        257 ALSRDGNSQIYTVNADGS-----------------GLRRLTQSSGI--DTEPFF-SPDGRSIYFTSDRGGAPQIYRMPAS  316 (427)
T ss_pred             EEccCCCceEEEEECCCC-----------------CcEECCCCCCC--CcCeEE-cCCCCEEEEEecCCCCcEEEEEECC
Confidence             4 47665555  44443                 23344433322  566788 999998876554 45555554  44


Q ss_pred             CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484          179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD  253 (312)
Q Consensus       179 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  253 (312)
                      +++.. .+..+.......+|+|+|++++..+.++   .|.+||+.++....+.....  .....|+++++.++..+.+
T Consensus       317 ~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~--~~~p~~spdg~~l~~~~~~  391 (427)
T PRK02889        317 GGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTR--DESPSFAPNGRYILYATQQ  391 (427)
T ss_pred             CCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCC--ccCceECCCCCEEEEEEec
Confidence            44432 2222223344678999999988776554   69999998876544432211  1233467777766655543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.4e-12  Score=112.74  Aligned_cols=161  Identities=11%  Similarity=0.039  Sum_probs=103.3

Q ss_pred             eEEEEEcCCCCcEEEEE-eCCCeEEEE--EccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e-c
Q 021484           33 LNAIVIDPRNPNYFAVG-GSDEYARVY--DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-N  107 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~-~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~  107 (312)
                      ...++|+|++ +.|+.+ +.+|.+.||  |+.+++.               ..+ ..+...+....|+|+|+.|+. + .
T Consensus       250 ~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~~---------------~~l-t~~~~~~~~~~wSpDG~~i~f~s~~  312 (429)
T PRK01742        250 NGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGTP---------------SQL-TSGAGNNTEPSWSPDGQSILFTSDR  312 (429)
T ss_pred             cCceeECCCC-CEEEEEEecCCcEEEEEEECCCCCe---------------Eee-ccCCCCcCCEEECCCCCEEEEEECC
Confidence            3468999999 555554 568876666  5544431               111 334556778999999996655 4 3


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  187 (312)
                      ++...||++....               .....+ .+..    ....| +|+|++|+..+.++ +.+||+.+++......
T Consensus       313 ~g~~~I~~~~~~~---------------~~~~~l-~~~~----~~~~~-SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~  370 (429)
T PRK01742        313 SGSPQVYRMSASG---------------GGASLV-GGRG----YSAQI-SADGKTLVMINGDN-VVKQDLTSGSTEVLSS  370 (429)
T ss_pred             CCCceEEEEECCC---------------CCeEEe-cCCC----CCccC-CCCCCEEEEEcCCC-EEEEECCCCCeEEecC
Confidence            7788888765421               112222 2221    34677 99999998887765 5569998887543322


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEccC---CCCCCCCCCCChhhh
Q 021484          188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP---MPTDFPPLPDNAEKI  234 (312)
Q Consensus       188 ~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~---~~~~~~~~~~~~~~~  234 (312)
                      .+  ....+.|+|+|++++.++.++.+++|.+   .......+..+...+
T Consensus       371 ~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~  418 (429)
T PRK01742        371 TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV  418 (429)
T ss_pred             CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCC
Confidence            22  2356789999999999998998887764   344445555444434

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.48  E-value=2.9e-13  Score=117.55  Aligned_cols=212  Identities=17%  Similarity=0.229  Sum_probs=138.9

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      +||.+.|+.++.+.++ .++++++.|..|++|.+..+.               +..++.+|.+.|++|+|+|-.   .++
T Consensus       229 rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~---------------pvsvLrghtgavtaiafsP~~---sss  289 (1113)
T KOG0644|consen  229 RGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGA---------------PVSVLRGHTGAVTAIAFSPRA---SSS  289 (1113)
T ss_pred             CCCccccchhccchhh-hhhhhcccCceEEEEecCCCc---------------hHHHHhccccceeeeccCccc---cCC
Confidence            6899999999999988 799999999999999999885               444558999999999999965   445


Q ss_pred             cCCcEEEEEcC-CCc--CCCCCcCCccc-------------ccCCCCCce--------EecccCCceeeEEEEecCCCCE
Q 021484          107 NDELVYLFEKN-MGL--GPSPLSLSPED-------------LQKREEPQV--------YSGHRNSQTVKGVNFFGPNDEY  162 (312)
Q Consensus       107 ~d~~i~iwd~~-~~~--~~~~~~~~~~~-------------~~~~~~~~~--------~~~~~~~~~v~~v~~~s~~~~~  162 (312)
                      .||++++||.+ ...  .|.+..+...+             +.++..--.        +..+...  +.-+.+.+....+
T Consensus       290 ~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~--lif~t~ssd~~~~  367 (1113)
T KOG0644|consen  290 DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNL--LIFVTRSSDLSSI  367 (1113)
T ss_pred             CCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccc--eEEEecccccccc
Confidence            69999999987 111  01111110000             111000000        0011110  1111111111234


Q ss_pred             EEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC-CC-CCCChhhhhhhhc
Q 021484          163 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF-PP-LPDNAEKIMKANK  239 (312)
Q Consensus       163 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~-~~-~~~~~~~~~~~~~  239 (312)
                      .+++-.+-.+++|++.+|+..+.+.+|...++.+.+||-+.. ..+++.||...|||+-.+.. .. ..+|. .+ -..+
T Consensus       368 ~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl-~d~k  445 (1113)
T KOG0644|consen  368 VVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KL-VDGK  445 (1113)
T ss_pred             ceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-ee-eccc
Confidence            455556778999999999999999999999999999997765 67889999999999877653 22 22222 22 2334


Q ss_pred             cCCCCceeEEecCCceEEEEEe
Q 021484          240 QGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       240 ~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      ++.++..++....-|.+.|+..
T Consensus       446 FSqdgts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  446 FSQDGTSIALSDDHGQLYILGT  467 (1113)
T ss_pred             cCCCCceEecCCCCCceEEecc
Confidence            6666655555444566666653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=5.3e-12  Score=108.96  Aligned_cols=165  Identities=13%  Similarity=0.095  Sum_probs=105.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c-
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-  107 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~-  107 (312)
                      .+...+|+|++..++++.+.+|  .|++||+.+++..               .+ ..+...+....|+|+|+.|+.. . 
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~---------------~l-t~~~~~~~~~~wSPDG~~I~f~s~~  307 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---------------QV-TDGRSNNTEPTWFPDSQNLAYTSDQ  307 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------------Ec-cCCCCCcCceEECCCCCEEEEEeCC
Confidence            3456899999944444545555  5888999877521               11 2223456788999999977654 3 


Q ss_pred             CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC---ceEEEEeccCCee
Q 021484          108 DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKL  182 (312)
Q Consensus       108 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~  182 (312)
                      ++  .|+++++.++                 ....+......  .....| +|+|++|+..+.+   ..|.+||+.+++.
T Consensus       308 ~g~~~Iy~~d~~~g-----------------~~~~lt~~~~~--~~~~~~-SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~  367 (429)
T PRK03629        308 AGRPQVYKVNINGG-----------------APQRITWEGSQ--NQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATGGV  367 (429)
T ss_pred             CCCceEEEEECCCC-----------------CeEEeecCCCC--ccCEEE-CCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence            34  4555566554                 22333333322  556788 9999998776543   3588899988764


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCCc---EEEccCCCCCCCCCCCChhhh
Q 021484          183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKT---VKLWAPMPTDFPPLPDNAEKI  234 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~---i~iwd~~~~~~~~~~~~~~~~  234 (312)
                      . .+... .......|+|+|+.++.++.++.   +.++++.+.....+..+...+
T Consensus       368 ~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~  420 (429)
T PRK03629        368 Q-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQV  420 (429)
T ss_pred             E-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCc
Confidence            3 33321 22346789999999988887764   778888766665565544443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.46  E-value=2.2e-11  Score=105.52  Aligned_cols=185  Identities=11%  Similarity=0.051  Sum_probs=118.5

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCC---CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      +...+...+|+|++ +.|+.+..+   ..|++||+.+++..               .+ ..+...+.+++|+|+|+.|+.
T Consensus       188 ~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~---------------~~-~~~~~~~~~~~~spDg~~l~~  250 (417)
T TIGR02800       188 SREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQRE---------------KV-ASFPGMNGAPAFSPDGSKLAV  250 (417)
T ss_pred             CCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEE---------------Ee-ecCCCCccceEECCCCCEEEE
Confidence            34568889999999 666665433   47999999877521               11 223345567899999985553


Q ss_pred             -ec-C--CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEecc
Q 021484          106 -YN-D--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKK  178 (312)
Q Consensus       106 -~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~  178 (312)
                       .. +  ..|++|++.++                 ....+..+...  .....| +|++++|+..+. .+  .|+++++.
T Consensus       251 ~~~~~~~~~i~~~d~~~~-----------------~~~~l~~~~~~--~~~~~~-s~dg~~l~~~s~~~g~~~iy~~d~~  310 (417)
T TIGR02800       251 SLSKDGNPDIYVMDLDGK-----------------QLTRLTNGPGI--DTEPSW-SPDGKSIAFTSDRGGSPQIYMMDAD  310 (417)
T ss_pred             EECCCCCccEEEEECCCC-----------------CEEECCCCCCC--CCCEEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence             32 3  46899998765                 22333333322  456678 899998876554 33  68888888


Q ss_pred             CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484          179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD  253 (312)
Q Consensus       179 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  253 (312)
                      +++.. .+..+...+..+.|+|++++++.++.++   .|.+||+.++....+..... . ....+++++..++..+.+
T Consensus       311 ~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~-~~p~~spdg~~l~~~~~~  385 (417)
T TIGR02800       311 GGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGL-D-ESPSFAPNGRMILYATTR  385 (417)
T ss_pred             CCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCC-C-CCceECCCCCEEEEEEeC
Confidence            76643 4443455667889999999988888765   78899988765433332211 1 122356666666555444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.46  E-value=1.6e-12  Score=103.78  Aligned_cols=166  Identities=14%  Similarity=0.157  Sum_probs=129.0

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCC--CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   78 (312)
                      +++||+...  .++++.++.+.....---+--++++.|-+.  . +.|++++.-+.+++||.+.++        +|+..|
T Consensus       175 lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qR--------RPV~~f  243 (412)
T KOG3881|consen  175 LKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQR--------RPVAQF  243 (412)
T ss_pred             eeeeecccc--eeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccC--------cceeEe
Confidence            579999875  788888877654333223445678889875  4 799999999999999999775        455544


Q ss_pred             cccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCce-EecccCCceeeEEEEe
Q 021484           79 CPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNFF  156 (312)
Q Consensus        79 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~  156 (312)
                            .-...+++++...|.++++.++ .-+.+..||++++                +.... +.+..+.  ++++.. 
T Consensus       244 ------d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~----------------kl~g~~~kg~tGs--irsih~-  298 (412)
T KOG3881|consen  244 ------DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG----------------KLLGCGLKGITGS--IRSIHC-  298 (412)
T ss_pred             ------ccccCcceeeeecCCCcEEEEecccchhheecccCc----------------eeeccccCCccCC--cceEEE-
Confidence                  3346789999999999998888 5999999999987                55544 7777766  999998 


Q ss_pred             cCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCC
Q 021484          157 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP  203 (312)
Q Consensus       157 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~  203 (312)
                      +|.++++++++-|..|+|+|+.+.+++..... ...++++.+.++-+
T Consensus       299 hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~~n  344 (412)
T KOG3881|consen  299 HPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDDVN  344 (412)
T ss_pred             cCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCCcc
Confidence            89999999999999999999999777655442 34567777765543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.46  E-value=1.8e-11  Score=95.47  Aligned_cols=159  Identities=10%  Similarity=0.095  Sum_probs=121.4

Q ss_pred             CccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE-e
Q 021484           88 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-G  166 (312)
Q Consensus        88 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~-~  166 (312)
                      ..+|.++.+.++  .|+...++.|+||...+..               +.+..+....+++-+.+++- ..+..+|+. |
T Consensus        94 ~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~---------------k~l~~~et~~NPkGlC~~~~-~~~k~~LafPg  155 (346)
T KOG2111|consen   94 NSEIKAVKLRRD--RIVVVLENKIYVYTFPDNP---------------KLLHVIETRSNPKGLCSLCP-TSNKSLLAFPG  155 (346)
T ss_pred             ccceeeEEEcCC--eEEEEecCeEEEEEcCCCh---------------hheeeeecccCCCceEeecC-CCCceEEEcCC
Confidence            567889988765  6777788999999998541               55666665554444666653 334445543 4


Q ss_pred             ccCceEEEEeccCCee--EEEeecCccceEEEEEcCCCCeEEEEeCCCc-EEEccCCCCCC-CCCC-CChhhhhhhhccC
Q 021484          167 SDCGHLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEKT-VKLWAPMPTDF-PPLP-DNAEKIMKANKQG  241 (312)
Q Consensus       167 ~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~-i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~  241 (312)
                      -.-|.|.|-|+...+.  -..+.+|...|.+++.+.+|..+||+|..|+ |||||..+++. ..+. +...+-+....++
T Consensus       156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS  235 (346)
T KOG2111|consen  156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS  235 (346)
T ss_pred             CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence            5679999999876554  4678899999999999999999999999997 79999998873 4443 4444455666789


Q ss_pred             CCCceeEEecCCceEEEEEeccc
Q 021484          242 REDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       242 ~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ++..+|+..+.-|+++|+.++..
T Consensus       236 p~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  236 PNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             CCccEEEEEcCCCeEEEEEeecC
Confidence            99999999999999999998753

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.42  E-value=1.1e-12  Score=111.55  Aligned_cols=147  Identities=16%  Similarity=0.261  Sum_probs=119.4

Q ss_pred             cEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC
Q 021484           90 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC  169 (312)
Q Consensus        90 ~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d  169 (312)
                      .|..++|.|||..|+.+.+..+.+||...+                ..++++++|++.  |.+++| +.+|+.+++|+.|
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG----------------~llqtLKgHKDt--VycVAy-s~dGkrFASG~aD   74 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDG----------------TLLQPLKGHKDT--VYCVAY-AKDGKRFASGSAD   74 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCc----------------ccccccccccce--EEEEEE-ccCCceeccCCCc
Confidence            688999999999998888999999999988                799999999976  999999 9999999999999


Q ss_pred             ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEE
Q 021484          170 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT  249 (312)
Q Consensus       170 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  249 (312)
                      ..|.+|...- +-+.. ..|...|.++.|+|-...+++++. ...-+|......+.... ....+ ....|..++.+++-
T Consensus        75 K~VI~W~~kl-EG~Lk-YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~k-ss~R~-~~CsWtnDGqylal  149 (1081)
T KOG1538|consen   75 KSVIIWTSKL-EGILK-YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKHK-SSSRI-ICCSWTNDGQYLAL  149 (1081)
T ss_pred             eeEEEecccc-cceee-eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhhh-hheeE-EEeeecCCCcEEEE
Confidence            9999998652 22222 259999999999999999999984 35678887655443222 12223 33347789999999


Q ss_pred             ecCCceEEEEE
Q 021484          250 LTPDVIMHVLR  260 (312)
Q Consensus       250 ~~~d~~i~i~~  260 (312)
                      |-.+|+|.+-+
T Consensus       150 G~~nGTIsiRN  160 (1081)
T KOG1538|consen  150 GMFNGTISIRN  160 (1081)
T ss_pred             eccCceEEeec
Confidence            99999998876

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=2.7e-11  Score=105.02  Aligned_cols=158  Identities=11%  Similarity=0.022  Sum_probs=101.9

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec--
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--  107 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--  107 (312)
                      ...+.+|+|++..++++.+.+|  .|++||+.+++..               .+ ..+.......+|+|+|+.|+..+  
T Consensus       249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~---------------~l-t~~~~~~~~~~~spDG~~l~f~sd~  312 (433)
T PRK04922        249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT---------------RL-TNHFGIDTEPTWAPDGKSIYFTSDR  312 (433)
T ss_pred             CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE---------------EC-ccCCCCccceEECCCCCEEEEEECC
Confidence            3457899999955555666655  5999999877521               11 23333456789999999776643  


Q ss_pred             CCc--EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc---eEEEEeccCCee
Q 021484          108 DEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKL  182 (312)
Q Consensus       108 d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~  182 (312)
                      ++.  |+++++.++                + .+.+.....  .....+| +|+|++|+..+.++   .|.+||+.+++.
T Consensus       313 ~g~~~iy~~dl~~g----------------~-~~~lt~~g~--~~~~~~~-SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~  372 (433)
T PRK04922        313 GGRPQIYRVAASGG----------------S-AERLTFQGN--YNARASV-SPDGKKIAMVHGSGGQYRIAVMDLSTGSV  372 (433)
T ss_pred             CCCceEEEEECCCC----------------C-eEEeecCCC--CccCEEE-CCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence            444  777777654                2 222322222  2456888 99999988765433   699999988765


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCCCCC
Q 021484          183 VRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPL  227 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~  227 (312)
                      . .+. +........|+|+|++++..+.+   +.|.++++.+.....+
T Consensus       373 ~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l  418 (433)
T PRK04922        373 R-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL  418 (433)
T ss_pred             E-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence            4 443 22344567999999987766643   4577888866544434

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.7e-10  Score=100.15  Aligned_cols=183  Identities=11%  Similarity=0.009  Sum_probs=112.1

Q ss_pred             CccceEEEEEcCCCCcEEEEEe-CC--CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGG-SD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      +...+...+|+|++ +.|+..+ .+  ..|.+|++.+++...               + ....+.+...+|+|+|+.|+.
T Consensus       197 ~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~---------------l-~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        197 SREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQ---------------I-TNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             CCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEE---------------c-cCCCCCcCCeEECCCCCEEEE
Confidence            45678899999999 5655544 32  468899998775211               1 111233446899999986664


Q ss_pred             -e-cCC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-C--ceEEEEecc
Q 021484          106 -Y-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKK  178 (312)
Q Consensus       106 -~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-d--g~v~iwd~~  178 (312)
                       . .++  .|++||+.++                 ....+..+...  .....| +|+++.|+..+. +  ..|+++++.
T Consensus       260 ~~~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~~-spDg~~i~f~s~~~g~~~iy~~d~~  319 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASR-----------------QLSRVTNHPAI--DTEPFW-GKDGRTLYFTSDRGGKPQIYKVNVN  319 (430)
T ss_pred             EEccCCCceEEEEECCCC-----------------CeEEcccCCCC--cCCeEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence             3 344  6888898875                 22334433322  566788 999998766553 3  367788887


Q ss_pred             CCeeEEEeecCccceEEEEEcCCCCeEEEEeCC-C--cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEec
Q 021484          179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-K--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT  251 (312)
Q Consensus       179 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  251 (312)
                      +++... +...........|+|+++.++..+.+ +  .|.+||+.++....+..... . ....+++++..++..+
T Consensus       320 ~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~-~~p~~spdg~~i~~~~  392 (430)
T PRK00178        320 GGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSL-D-ESPSVAPNGTMLIYAT  392 (430)
T ss_pred             CCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCC-C-CCceECCCCCEEEEEE
Confidence            776433 22122233457899999998776643 3  58889988876544432111 1 1223666666655443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=9.8e-11  Score=101.65  Aligned_cols=206  Identities=9%  Similarity=0.056  Sum_probs=128.9

Q ss_pred             CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec----CCcEEEEEcCCCcCCCCCcCC
Q 021484           53 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLGPSPLSLS  128 (312)
Q Consensus        53 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----d~~i~iwd~~~~~~~~~~~~~  128 (312)
                      ..|.++|.....               ...+ ..|...+...+|+|+|+.|+..+    +..|++||+.++         
T Consensus       182 ~~l~~~d~dg~~---------------~~~l-t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g---------  236 (435)
T PRK05137        182 KRLAIMDQDGAN---------------VRYL-TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG---------  236 (435)
T ss_pred             eEEEEECCCCCC---------------cEEE-ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC---------
Confidence            378888876443               2222 45677899999999999766632    468999999876         


Q ss_pred             cccccCCCCCceEecccCCceeeEEEEecCCCCEEE-EeccCc--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE
Q 021484          129 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF  205 (312)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  205 (312)
                             + .+.+..+...  +...+| +|+|+.|+ +.+.++  .|++||+.+++. ..+..+........|+|+|+.+
T Consensus       237 -------~-~~~l~~~~g~--~~~~~~-SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i  304 (435)
T PRK05137        237 -------Q-RELVGNFPGM--TFAPRF-SPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQI  304 (435)
T ss_pred             -------c-EEEeecCCCc--ccCcEE-CCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEE
Confidence                   2 2344444433  677888 99998775 455555  477889887765 4455565666789999999988


Q ss_pred             EEEeC-CC--cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC---ceEEEEEecccCccc--------eeE
Q 021484          206 ATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD---VIMHVLRLQRRQTLA--------YRE  271 (312)
Q Consensus       206 ~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~i~~~~~~~~~~--------~~~  271 (312)
                      +..+. ++  .|.++|+.++....+....... ....|++++..++..+.+   ..+.+|++.......        ...
T Consensus       305 ~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~-~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~  383 (435)
T PRK05137        305 VFESDRSGSPQLYVMNADGSNPRRISFGGGRY-STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPT  383 (435)
T ss_pred             EEEECCCCCCeEEEEECCCCCeEEeecCCCcc-cCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCe
Confidence            77663 33  6888898877654443222222 233478888877665433   356777764322111        114


Q ss_pred             eecCCCccCCCC--CC----CeEEEeecCCC
Q 021484          272 RRYNAADFESDE--EE----GETYLLGFSDS  296 (312)
Q Consensus       272 ~~~~~~~~~~~~--~~----~~v~~~~~~~~  296 (312)
                      ++|++..+....  ..    ..+|.++.+.+
T Consensus       384 ~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        384 WAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             ECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            555655543321  11    35777777544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=5.7e-11  Score=104.05  Aligned_cols=204  Identities=14%  Similarity=0.206  Sum_probs=146.6

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEE
Q 021484           34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVY  112 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~  112 (312)
                      .++.+++.+ ++.+.. .+..+.+|+..++.           ...+....-..|.-.+++.+++|++.++|++ .||+|.
T Consensus       164 ~~I~~~~~g-e~~~i~-~~~~~~~~~v~~~~-----------~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~  230 (792)
T KOG1963|consen  164 KSIVDNNSG-EFKGIV-HMCKIHIYFVPKHT-----------KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRIL  230 (792)
T ss_pred             ccEEEcCCc-eEEEEE-EeeeEEEEEecccc-----------eeeccchhhhhhcccceeEEeccccceEEEeccCCcEE
Confidence            567777876 455444 45778889988643           1113333335677779999999999999998 599999


Q ss_pred             EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccc
Q 021484          113 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV  192 (312)
Q Consensus       113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  192 (312)
                      +|.--....            .......+.-|...  |.+++| +++|.+|++|+.+|.+.+|.+.+++ .+-++.-.++
T Consensus       231 vw~d~~~~~------------~~~t~t~lHWH~~~--V~~L~f-S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~  294 (792)
T KOG1963|consen  231 VWRDFGSSD------------DSETCTLLHWHHDE--VNSLSF-SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSP  294 (792)
T ss_pred             EEecccccc------------ccccceEEEecccc--cceeEE-ecCCceEeecccceEEEEEeecCCC-cccccccCCe
Confidence            996433100            00344667777766  999999 9999999999999999999999988 4455666789


Q ss_pred             eEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCC---C-------hhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          193 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD---N-------AEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       193 v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~---~-------~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      |..+.++|++.+.+....|..|.+-...+..+ .++.+   .       ...........+..+.++-.+..+.++.+|+
T Consensus       295 I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl  374 (792)
T KOG1963|consen  295 ILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL  374 (792)
T ss_pred             eEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence            99999999999999999999999988755432 11111   1       1222233334444567777888899999998


Q ss_pred             cccCc
Q 021484          262 QRRQT  266 (312)
Q Consensus       262 ~~~~~  266 (312)
                      .+...
T Consensus       375 ~td~~  379 (792)
T KOG1963|consen  375 YTDST  379 (792)
T ss_pred             cccce
Confidence            76543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=2.4e-12  Score=120.16  Aligned_cols=190  Identities=13%  Similarity=0.195  Sum_probs=144.3

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  107 (312)
                      |-..|.++.=||.. -+.+||+.||.+++|....++.+.           +..   ..-...++.+.|+.+|..+..+ .
T Consensus      2207 ~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~-----------~~r---t~g~s~vtr~~f~~qGnk~~i~d~ 2271 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVV-----------CFR---TAGNSRVTRSRFNHQGNKFGIVDG 2271 (2439)
T ss_pred             ccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEE-----------Eee---ccCcchhhhhhhcccCCceeeecc
Confidence            34568888889988 589999999999999998776321           111   2223788999999999877776 6


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec---cCceEEEEecc--CCee
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKK--GGKL  182 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~---~dg~v~iwd~~--~~~~  182 (312)
                      ||.+.+|.+..                 ++....+.|...  ..+..|.   +..+++++   .++.+.+||..  .+..
T Consensus      2272 dg~l~l~q~~p-----------------k~~~s~qchnk~--~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2272 DGDLSLWQASP-----------------KPYTSWQCHNKA--LSDFRFI---GSLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred             CCceeecccCC-----------------cceeccccCCcc--ccceeee---ehhhhccccCCCCCcccchhcccCcccc
Confidence            99999999874                 466666677754  8888883   35666654   57899999954  2222


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      +.. ..|.+.++++++.|..+.|++||.+|.|++||++...+ +.++.          +. ...++++++..|.++||++
T Consensus      2330 ~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2330 LVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             eee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEc
Confidence            222 78999999999999999999999999999999987764 22321          22 4568999999999999999


Q ss_pred             cccCcc
Q 021484          262 QRRQTL  267 (312)
Q Consensus       262 ~~~~~~  267 (312)
                      ...+.+
T Consensus      2398 s~~~ll 2403 (2439)
T KOG1064|consen 2398 SEFGLL 2403 (2439)
T ss_pred             cccchh
Confidence            877443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.38  E-value=4.4e-12  Score=109.09  Aligned_cols=205  Identities=16%  Similarity=0.240  Sum_probs=146.1

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s  105 (312)
                      .||...|+.+-|+|+.+..+++++.|..+..||+++-.        .++-.+      ..-......++|+-. +..+|+
T Consensus       111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--------~p~ys~------~~w~s~asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen  111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--------RPFYST------SSWRSAASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             ecCccceeccccCCCCCcceeeccccccceeeeccCCC--------cceeee------ecccccCceeeecccCcchhhh
Confidence            36899999999999999999999999999999999764        222222      222344567889864 467888


Q ss_pred             ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe--eE
Q 021484          106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--LV  183 (312)
Q Consensus       106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~  183 (312)
                      +..+.|++||++.+.               .++..+++|...  |..+.|.......+++++.||+|++||.....  ..
T Consensus       177 shg~~i~vwd~r~gs---------------~pl~s~K~~vs~--vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~  239 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGS---------------TPLCSLKGHVSS--VNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK  239 (1081)
T ss_pred             ccCCceEEEeccCCC---------------cceEEeccccee--eehHHHhhhhhhhhcccCCCCceeeecccccccccc
Confidence            888999999998873               567778887755  88888844456678899999999999976432  22


Q ss_pred             EEeecCccceEEEEEcCCCCeEEEEe--CCCcEEE---------ccCCCC--CCCCCCCChhhhhhhhccCCC-------
Q 021484          184 RLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKL---------WAPMPT--DFPPLPDNAEKIMKANKQGRE-------  243 (312)
Q Consensus       184 ~~~~~~~~~v~~~~~~p~~~~l~t~~--~d~~i~i---------wd~~~~--~~~~~~~~~~~~~~~~~~~~~-------  243 (312)
                      ... ....+|..-.+.|-|.-.++--  .+..+-+         |+..+.  .+.++.+|...++...|....       
T Consensus       240 ~~v-tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d  318 (1081)
T KOG0309|consen  240 RTV-TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYD  318 (1081)
T ss_pred             eec-cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCC
Confidence            222 2345666667777665422221  1223333         443333  257788999999988887652       


Q ss_pred             --CceeEEecCCceEEEEEecc
Q 021484          244 --DHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       244 --~~~l~s~~~d~~i~i~~~~~  263 (312)
                        .-.|++.+.|..+++|.+..
T Consensus       319 ~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  319 SRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ccceeEEEeecCCceEeeeccH
Confidence              34799999999999998754

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.38  E-value=2.1e-10  Score=90.10  Aligned_cols=151  Identities=15%  Similarity=0.257  Sum_probs=100.2

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec-CC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-DE  109 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-d~  109 (312)
                      .|.-+.|..+...+|.....++.|.+|++...+....              + .....++.++.|+|+|+ +|.+++ +-
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck--------------I-deg~agls~~~WSPdgrhiL~tseF~l  114 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK--------------I-DEGQAGLSSISWSPDGRHILLTSEFDL  114 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeecceeEEE--------------e-ccCCCcceeeeECCCcceEeeeeccee
Confidence            4667889888756677778999999999987663221              1 34467889999999996 555565 89


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---------------------
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---------------------  168 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---------------------  168 (312)
                      .|.+|.+.+.                 ....++-.+..  +..++| +++|++.+.++.                     
T Consensus       115 riTVWSL~t~-----------------~~~~~~~pK~~--~kg~~f-~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f  174 (447)
T KOG4497|consen  115 RITVWSLNTQ-----------------KGYLLPHPKTN--VKGYAF-HPDGQFCAILSRRDCKDYVQISSCKAWILLKEF  174 (447)
T ss_pred             EEEEEEeccc-----------------eeEEecccccC--ceeEEE-CCCCceeeeeecccHHHHHHHHhhHHHHHHHhc
Confidence            9999999875                 22222222222  566676 677776665543                     


Q ss_pred             ---------------CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021484          169 ---------------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA  218 (312)
Q Consensus       169 ---------------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd  218 (312)
                                     +..+.+||.--.-.+..+. -.-.+..++|+|.+++++.|+.|+.+|+-+
T Consensus       175 ~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  175 KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             CCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhc
Confidence                           1123344422111111221 224678899999999999999999998854

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=1.3e-12  Score=108.68  Aligned_cols=161  Identities=14%  Similarity=0.147  Sum_probs=118.9

Q ss_pred             cccCCCccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCce-EecccCCceeeEEEEecC-C
Q 021484           83 LIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNFFGP-N  159 (312)
Q Consensus        83 ~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~s~-~  159 (312)
                      -+.+|.+-|.+++|+.+|.+|++|+ |-.+.|||.-..                +++.. -.+|...  |.++.|.+. +
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~----------------KllhsI~TgHtaN--IFsvKFvP~tn  106 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY----------------KLLHSISTGHTAN--IFSVKFVPYTN  106 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhc----------------ceeeeeecccccc--eeEEeeeccCC
Confidence            3489999999999999999999986 788999998765                45444 4578866  999999433 3


Q ss_pred             CCEEEEeccCceEEEEeccC----------CeeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCCCCCCC
Q 021484          160 DEYVMSGSDCGHLFIWKKKG----------GKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDFPPLP  228 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~~~~~  228 (312)
                      .+++++|..|..|+++|+..          ......+..|...|..++-.|+++ .+-++++||+|+-+|++......-.
T Consensus       107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~  186 (758)
T KOG1310|consen  107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD  186 (758)
T ss_pred             CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc
Confidence            56788999999999999874          233455667889999999999994 5999999999999999863321100


Q ss_pred             C--C------hhhh--hhhhccCC-CCceeEEecCCceEEEEEe
Q 021484          229 D--N------AEKI--MKANKQGR-EDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       229 ~--~------~~~~--~~~~~~~~-~~~~l~s~~~d~~i~i~~~  261 (312)
                      +  +      ....  .++...++ ...+|+.|+.|-..+++|.
T Consensus       187 ~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  187 EDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             ccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            0  0      0111  12222334 5677888888888888874

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.37  E-value=4.4e-11  Score=100.45  Aligned_cols=190  Identities=13%  Similarity=0.126  Sum_probs=138.2

Q ss_pred             CcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE------cc-------------CCC-e
Q 021484           43 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY------SN-------------TSE-L  102 (312)
Q Consensus        43 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~-------------~~~-~  102 (312)
                      ..++|....||.+++|+....++..........            .+..++.+|      +|             .+. .
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~------------s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~   72 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL------------SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSM   72 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhc------------cCcceeEEEEEEeccchHHHHhHHHHhhccCCceE
Confidence            378999999999999999988765432211111            122222222      11             122 4


Q ss_pred             EEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe
Q 021484          103 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       103 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~  181 (312)
                      ++-| ..|.|.+|++..+                +....+.+......|.++.+ +.+-..|.+++.|+.+..|+...++
T Consensus        73 lvlgt~~g~v~~ys~~~g----------------~it~~~st~~h~~~v~~~~~-~~~~~ciyS~~ad~~v~~~~~~~~~  135 (541)
T KOG4547|consen   73 LVLGTPQGSVLLYSVAGG----------------EITAKLSTDKHYGNVNEILD-AQRLGCIYSVGADLKVVYILEKEKV  135 (541)
T ss_pred             EEeecCCccEEEEEecCC----------------eEEEEEecCCCCCcceeeec-ccccCceEecCCceeEEEEecccce
Confidence            5556 5899999999887                67777774444455999988 7888899999999999999999999


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCC----CCceeE-EecCCce
Q 021484          182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR----EDHSRI-TLTPDVI  255 (312)
Q Consensus       182 ~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~l~-s~~~d~~  255 (312)
                      .+..++.....+.+++.+|++..+++++  ++|++||+++.++ ..+++|...+-.......    .+.+++ +...+..
T Consensus       136 ~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~  213 (541)
T KOG4547|consen  136 IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG  213 (541)
T ss_pred             eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence            9999999889999999999999999998  8999999999985 778888877744332211    133333 4445566


Q ss_pred             EEEEEecc
Q 021484          256 MHVLRLQR  263 (312)
Q Consensus       256 i~i~~~~~  263 (312)
                      +.+|-+..
T Consensus       214 i~~w~v~~  221 (541)
T KOG4547|consen  214 ITVWVVEK  221 (541)
T ss_pred             eeEEEEEc
Confidence            67776544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=9.6e-11  Score=101.27  Aligned_cols=153  Identities=10%  Similarity=0.063  Sum_probs=94.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEcc--CCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec-
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIR--KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-  107 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-  107 (312)
                      .+.+.+|+|++..++++.+.+|...+|.+.  ++.               ...+ ..+........|+|+|+.|+. +. 
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---------------~~~l-t~~~~~~~~~~wSpDG~~l~f~s~~  304 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---------------LRRL-TQSSGIDTEPFFSPDGRSIYFTSDR  304 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCC---------------cEEC-CCCCCCCcCeEEcCCCCEEEEEecC
Confidence            456889999995455567788887777654  332               1111 233344566789999996665 33 


Q ss_pred             CCcEEEEEc--CCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc---eEEEEeccCCee
Q 021484          108 DELVYLFEK--NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKL  182 (312)
Q Consensus       108 d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~  182 (312)
                      ++...+|.+  .++                 ..+.+.....  .....+| +|+|++|+..+.++   .|.+||+.+++.
T Consensus       305 ~g~~~Iy~~~~~~g-----------------~~~~lt~~g~--~~~~~~~-SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        305 GGAPQIYRMPASGG-----------------AAQRVTFTGS--YNTSPRI-SPDGKLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             CCCcEEEEEECCCC-----------------ceEEEecCCC--CcCceEE-CCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence            456566654  333                 2222222221  1445778 99999998776554   699999988765


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEccCCCC
Q 021484          183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPT  222 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~  222 (312)
                      . .+..+ .......|+|+++.|+.++.++   .+.+.++.+.
T Consensus       365 ~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~  405 (427)
T PRK02889        365 T-ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR  405 (427)
T ss_pred             E-EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCC
Confidence            4 33322 3346789999999977776443   3555555443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.35  E-value=2.9e-11  Score=107.65  Aligned_cols=147  Identities=16%  Similarity=0.154  Sum_probs=121.2

Q ss_pred             EcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEc
Q 021484           38 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEK  116 (312)
Q Consensus        38 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~  116 (312)
                      ++++. -++++|+.-+.|.+|+....+               ....+.+|.+.|.++.|+.+|.++++. .|..+++|++
T Consensus       141 ~s~~~-~~i~~gsv~~~iivW~~~~dn---------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i  204 (967)
T KOG0974|consen  141 DSAEE-LYIASGSVFGEIIVWKPHEDN---------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPI  204 (967)
T ss_pred             ccCcE-EEEEeccccccEEEEeccccC---------------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeec
Confidence            45555 788999999999999998332               222348999999999999999999996 5999999999


Q ss_pred             CCCcCCCCCcCCcccccCCCCCc-eEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCc-cceE
Q 021484          117 NMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVN  194 (312)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~  194 (312)
                      .+.                +... ..-+|...  +..++| .|+  .+++++.|-+.++|+.+ ++.+..+.+|. ..+.
T Consensus       205 ~s~----------------~~~~~~~fgHsaR--vw~~~~-~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw  262 (967)
T KOG0974|consen  205 DSR----------------EVLGCTGFGHSAR--VWACCF-LPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIW  262 (967)
T ss_pred             ccc----------------cccCcccccccce--eEEEEe-ccc--eeEEeccceEEEEEecc-cceehhhhhhhhccee
Confidence            987                3333 55578866  999998 666  99999999999999776 55566787776 5789


Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          195 QLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       195 ~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                      .++.++.....+|++.|+.+++|++...
T Consensus       263 ~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  263 KIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            9999999999999999999999997653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=3e-11  Score=101.24  Aligned_cols=167  Identities=16%  Similarity=0.219  Sum_probs=123.1

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      ..+++++..++-+ .+|++|+.+|.|..||.+....+........+...    ........|+++.|+.+|..++.| ++
T Consensus       175 ~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~----pg~~~~~svTal~F~d~gL~~aVGts~  249 (703)
T KOG2321|consen  175 SGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSH----PGGDAAPSVTALKFRDDGLHVAVGTST  249 (703)
T ss_pred             cccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCC----ccccccCcceEEEecCCceeEEeeccC
Confidence            5689999999988 69999999999999999987644333222211110    001123459999999999888887 69


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  188 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  188 (312)
                      |.+.|||++..                ++ .....|....+|..+.|...+++--+.......++|||-.+|++...+. 
T Consensus       250 G~v~iyDLRa~----------------~p-l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-  311 (703)
T KOG2321|consen  250 GSVLIYDLRAS----------------KP-LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE-  311 (703)
T ss_pred             CcEEEEEcccC----------------Cc-eeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc-
Confidence            99999999986                33 3445566666799999943333333444567789999999999988776 


Q ss_pred             CccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       189 ~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                      ....++.+++-|++.+++++..+..+..|=+
T Consensus       312 pt~~lND~C~~p~sGm~f~Ane~~~m~~yyi  342 (703)
T KOG2321|consen  312 PTSDLNDFCFVPGSGMFFTANESSKMHTYYI  342 (703)
T ss_pred             ccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence            4456999999999999999988877766543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.33  E-value=1.4e-10  Score=91.49  Aligned_cols=207  Identities=16%  Similarity=0.148  Sum_probs=147.9

Q ss_pred             CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEcc-CCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021484           26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  104 (312)
Q Consensus        26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  104 (312)
                      +-||.+.|++...-|.. .-+.+.+.|.++|+|--+ .++              .-..+......+++++.++++...|+
T Consensus        20 ~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q--------------~wpsI~~~mP~~~~~~~y~~e~~~L~   84 (404)
T KOG1409|consen   20 IEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQ--------------YWPSIYHYMPSPCSAMEYVSESRRLY   84 (404)
T ss_pred             hcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccc--------------cCchhhhhCCCCceEeeeeccceEEE
Confidence            35788899999888877 689999999999999654 444              11111123357789999999988888


Q ss_pred             Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc-----
Q 021484          105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-----  178 (312)
Q Consensus       105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~-----  178 (312)
                      .+ ..|++.-+.+...            +.+....+.+..|...  +..+-| +....++++.+.|..+.---.+     
T Consensus        85 vg~~ngtvtefs~sed------------fnkm~~~r~~~~h~~~--v~~~if-~~~~e~V~s~~~dk~~~~hc~e~~~~l  149 (404)
T KOG1409|consen   85 VGQDNGTVTEFALSED------------FNKMTFLKDYLAHQAR--VSAIVF-SLTHEWVLSTGKDKQFAWHCTESGNRL  149 (404)
T ss_pred             EEEecceEEEEEhhhh------------hhhcchhhhhhhhhcc--eeeEEe-cCCceeEEEeccccceEEEeeccCCcc
Confidence            87 5899988876432            3333455666666655  777776 6666667666666554222111     


Q ss_pred             ------------------------------------CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          179 ------------------------------------GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       179 ------------------------------------~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                                                          ...++.++.+|.+.+++++|.|....+.+|..|..+.+||+...
T Consensus       150 g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~  229 (404)
T KOG1409|consen  150 GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR  229 (404)
T ss_pred             cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence                                                12235577789999999999999999999999999999998765


Q ss_pred             C--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          223 D--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       223 ~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      +  ...+.+|.+.+-. .+...-...+++.+.|+.|.+|+++.
T Consensus       230 ~g~~~el~gh~~kV~~-l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  230 KGTAYELQGHNDKVQA-LSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             cceeeeeccchhhhhh-hhhhhhheeeeeccCCCeEEEEeccc
Confidence            5  4555666666633 33334456899999999999999764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=5.5e-10  Score=96.96  Aligned_cols=180  Identities=12%  Similarity=0.024  Sum_probs=105.8

Q ss_pred             ccceEEEEEcCCCCcEEEEE-eCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-
Q 021484           30 SIRLNAIVIDPRNPNYFAVG-GSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-  105 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-  105 (312)
                      ...+.+..|+|++ +.|+.. ..++  .|++||+.+++...       +         ..........+|+|+|+.|+. 
T Consensus       217 ~~~~~~p~wSPDG-~~La~~s~~~g~~~L~~~dl~tg~~~~-------l---------t~~~g~~~~~~wSPDG~~La~~  279 (448)
T PRK04792        217 PEPLMSPAWSPDG-RKLAYVSFENRKAEIFVQDIYTQVREK-------V---------TSFPGINGAPRFSPDGKKLALV  279 (448)
T ss_pred             CCcccCceECCCC-CEEEEEEecCCCcEEEEEECCCCCeEE-------e---------cCCCCCcCCeeECCCCCEEEEE
Confidence            4567889999999 555544 3333  58888988765210       0         111222346799999996654 


Q ss_pred             e-cCCc--EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEeccC
Q 021484          106 Y-NDEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKG  179 (312)
Q Consensus       106 ~-~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~~  179 (312)
                      . .++.  |+++|+.++                 ..+.+..+...  ....+| +|++++|+..+. ++  .|+++|+.+
T Consensus       280 ~~~~g~~~Iy~~dl~tg-----------------~~~~lt~~~~~--~~~p~w-SpDG~~I~f~s~~~g~~~Iy~~dl~~  339 (448)
T PRK04792        280 LSKDGQPEIYVVDIATK-----------------ALTRITRHRAI--DTEPSW-HPDGKSLIFTSERGGKPQIYRVNLAS  339 (448)
T ss_pred             EeCCCCeEEEEEECCCC-----------------CeEECccCCCC--ccceEE-CCCCCEEEEEECCCCCceEEEEECCC
Confidence            3 3554  788888765                 22333333322  567888 999998876543 33  577778877


Q ss_pred             CeeEEEeecCccceEEEEEcCCCCeEEEEeC-CC--cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEE
Q 021484          180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT  249 (312)
Q Consensus       180 ~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  249 (312)
                      ++... +..........+|+|+|++++..+. ++  .|.++|+.++....+..... . ....+++++..++.
T Consensus       340 g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~-d-~~ps~spdG~~I~~  409 (448)
T PRK04792        340 GKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRL-D-ESPSVAPNGTMVIY  409 (448)
T ss_pred             CCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCC-C-CCceECCCCCEEEE
Confidence            76433 2212223345789999999776654 34  45557777776433332211 1 11135666655543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=2e-11  Score=100.27  Aligned_cols=248  Identities=12%  Similarity=0.088  Sum_probs=167.3

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--CeEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLI  104 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~  104 (312)
                      .+|.+-|..+.|+..| ..+++|+.|..|.+||...++              ....+..+|...|....|-|..  +-++
T Consensus       139 ~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~--------------~~l~f~SGH~~NvfQaKFiP~s~d~ti~  203 (559)
T KOG1334|consen  139 NKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGS--------------PKLSFESGHCNNVFQAKFIPFSGDRTIV  203 (559)
T ss_pred             cCCCCccceeeecccC-ceeeccCccceEEeehhhccC--------------cccccccccccchhhhhccCCCCCcCce
Confidence            4699999999999999 899999999999999999887              3444447888888888898865  4566


Q ss_pred             Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccCCee
Q 021484          105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKL  182 (312)
Q Consensus       105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~  182 (312)
                      ++ .||++++=.+....             ..+..+.+..|.+.  |.-++. .|. ...|++++.|+.++-+|++...+
T Consensus       204 ~~s~dgqvr~s~i~~t~-------------~~e~t~rl~~h~g~--vhklav-~p~sp~~f~S~geD~~v~~~Dlr~~~p  267 (559)
T KOG1334|consen  204 TSSRDGQVRVSEILETG-------------YVENTKRLAPHEGP--VHKLAV-EPDSPKPFLSCGEDAVVFHIDLRQDVP  267 (559)
T ss_pred             eccccCceeeeeecccc-------------ceecceecccccCc--cceeee-cCCCCCcccccccccceeeeeeccCCc
Confidence            64 69999987664321             01223445556655  777776 454 56689999999999999987765


Q ss_pred             EEEe---ecCcc---ceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCCCC-------C-----CCCChhhhhhhhccCCC
Q 021484          183 VRLM---VGDRH---VVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDFP-------P-----LPDNAEKIMKANKQGRE  243 (312)
Q Consensus       183 ~~~~---~~~~~---~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~~-------~-----~~~~~~~~~~~~~~~~~  243 (312)
                      ...+   +.+..   ..+.++..|... .+++++.|..+++||.+.-...       .     +.......++.+.++.+
T Consensus       268 a~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~  347 (559)
T KOG1334|consen  268 AEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD  347 (559)
T ss_pred             cceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC
Confidence            4433   23333   467889999887 5999999999999997643211       1     11111222344445544


Q ss_pred             CceeEEecCCceEEEEEeccc--------------Ccccee------------EeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          244 DHSRITLTPDVIMHVLRLQRR--------------QTLAYR------------ERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       244 ~~~l~s~~~d~~i~i~~~~~~--------------~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      +.-|++.-.|-.+++++-...              .+.+|.            =+.|...++.++.|.|.||+|+=..+.
T Consensus       348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e  427 (559)
T KOG1334|consen  348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE  427 (559)
T ss_pred             ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH
Confidence            444555555556666642111              011121            235667788889999999999977765


Q ss_pred             CCCCCCCc
Q 021484          298 ASSEGGGN  305 (312)
Q Consensus       298 ~~~~~~~~  305 (312)
                      ---.+.|+
T Consensus       428 ii~~MegD  435 (559)
T KOG1334|consen  428 IIRFMEGD  435 (559)
T ss_pred             HHHHhhcc
Confidence            44444443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=5.8e-10  Score=96.10  Aligned_cols=201  Identities=10%  Similarity=0.005  Sum_probs=113.6

Q ss_pred             cceEEEEEcCCCCc--EEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           31 IRLNAIVIDPRNPN--YFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        31 ~~v~~~~~~p~~~~--~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      ..+..-+|+|+|..  ++++...+|  .|.+.++.+++..       .+         ..........+|+|||+.|+..
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-------~l---------t~~~g~~~~p~wSPDG~~Laf~  248 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-------KI---------LALQGNQLMPTFSPRKKLLAFI  248 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-------Ee---------ecCCCCccceEECCCCCEEEEE
Confidence            34567799999844  223444444  5777788766511       11         1123334567999999877654


Q ss_pred             c--CC--cE--EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEE--ec
Q 021484          107 N--DE--LV--YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIW--KK  177 (312)
Q Consensus       107 ~--d~--~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iw--d~  177 (312)
                      .  +|  .+  .+|++..+..             ....+........  ....+| +|+|+.|+..+ .+|...+|  ++
T Consensus       249 s~~~g~~di~~~~~~~~~g~~-------------g~~~~lt~~~~~~--~~~p~w-SPDG~~Laf~s~~~g~~~ly~~~~  312 (428)
T PRK01029        249 SDRYGNPDLFIQSFSLETGAI-------------GKPRRLLNEAFGT--QGNPSF-SPDGTRLVFVSNKDGRPRIYIMQI  312 (428)
T ss_pred             ECCCCCcceeEEEeecccCCC-------------CcceEeecCCCCC--cCCeEE-CCCCCEEEEEECCCCCceEEEEEC
Confidence            2  33  33  3466654200             0222222222222  456788 99999877654 45644444  44


Q ss_pred             cC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEE-ecC
Q 021484          178 KG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT-LTP  252 (312)
Q Consensus       178 ~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~  252 (312)
                      .. +.....+..+...+....|+|+|+.|+..+.+   ..|.+||+.+++...+....... ....|+++++.++. ...
T Consensus       313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~-~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENK-ESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCc-cceEECCCCCEEEEEECC
Confidence            32 23334444444566789999999998776543   46999999988765554322122 23346777766553 332


Q ss_pred             C--ceEEEEEeccc
Q 021484          253 D--VIMHVLRLQRR  264 (312)
Q Consensus       253 d--~~i~i~~~~~~  264 (312)
                      +  ..+.++++...
T Consensus       392 ~g~~~L~~vdl~~g  405 (428)
T PRK01029        392 SNESELYLISLITK  405 (428)
T ss_pred             CCCceEEEEECCCC
Confidence            2  45666665543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.30  E-value=2.4e-10  Score=88.34  Aligned_cols=167  Identities=10%  Similarity=0.069  Sum_probs=112.8

Q ss_pred             ccceEEEEEcC---CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           30 SIRLNAIVIDP---RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        30 ~~~v~~~~~~p---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      ...+..|.|.-   ++.-.++-+..+|.|.+|......-..      .++.+....+   ......++.|++.+..++++
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~------~L~~ls~~ki---~~~~~lslD~~~~~~~i~vs  139 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV------HLRGLSSKKI---SVVEALSLDISTSGTKIFVS  139 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeee------eecccchhhh---hheeeeEEEeeccCceEEEE
Confidence            34567777753   332356677788999998876433100      0000011111   11135678899999877776


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc-CCeeEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVR  184 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~  184 (312)
                       ++|.+.+-+....              ..+..+..+.|.-+  .....|...+.+.+++|++|+.+..||++ .++.+.
T Consensus       140 ~s~G~~~~v~~t~~--------------~le~vq~wk~He~E--~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  140 DSRGSISGVYETEM--------------VLEKVQTWKVHEFE--AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             cCCCcEEEEeccee--------------eeeeccccccccee--eeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence             6888885554432              11344577788866  77788855567899999999999999999 444444


Q ss_pred             E-eecCccceEEEEEcCC-CCeEEEEeCCCcEEEccCCC
Q 021484          185 L-MVGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       185 ~-~~~~~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~  221 (312)
                      . .+.|...|.++.-+|. +.+++||+.|..|++||.+.
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN  242 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence            3 4568889999988765 56799999999999999984

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.30  E-value=5.6e-11  Score=93.72  Aligned_cols=227  Identities=15%  Similarity=0.155  Sum_probs=146.1

Q ss_pred             ccceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCCeecC---------------------CCCCCCCcccccccccccCC
Q 021484           30 SIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYS---------------------PISSDTPVDTFCPRHLIGKN   87 (312)
Q Consensus        30 ~~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~   87 (312)
                      ...|..+.|.+++. ..++..+.|.+|++|.+.......                     ..+.+..+...+.+.....|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            45788999988542 467778899999999987543221                     00111122333344445689


Q ss_pred             CccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec
Q 021484           88 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  167 (312)
Q Consensus        88 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~  167 (312)
                      ...|.+|.++.|++.+.++.|=.|.+|+++-.    ++++.+-++++-    .+..-.  ..|++..|++...+.++-.+
T Consensus       164 tyhiNSIS~NsD~Et~lSADdLRINLWnlei~----d~sFnIVDIKP~----nmEeLt--eVITsaEFhp~~cn~f~YSS  233 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSADDLRINLWNLEII----DQSFNIVDIKPA----NMEELT--EVITSAEFHPHHCNVFVYSS  233 (433)
T ss_pred             eeEeeeeeecCccceEeeccceeeeecccccc----CCceeEEEcccc----CHHHHH--HHHhhhccCHhHccEEEEec
Confidence            99999999999999999999999999998643    111111111110    011111  23788888444567788889


Q ss_pred             cCceEEEEeccCCeeEE----Eee------------cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCC
Q 021484          168 DCGHLFIWKKKGGKLVR----LMV------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPD  229 (312)
Q Consensus       168 ~dg~v~iwd~~~~~~~~----~~~------------~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~  229 (312)
                      ..|+|++.|++...+.-    .+.            .--..|.++.|+++|+++++-.. -+|++||+....  +.+++-
T Consensus       234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v  312 (433)
T KOG1354|consen  234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV  312 (433)
T ss_pred             CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence            99999999998543211    111            11246889999999999988753 689999985432  333332


Q ss_pred             Ch--h----------hhhhh--hccCCCCceeEEecCCceEEEEEecccCcc
Q 021484          230 NA--E----------KIMKA--NKQGREDHSRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       230 ~~--~----------~~~~~--~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      |.  .          .++..  ..|+.++...+||+....++++++.++.+.
T Consensus       313 h~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~  364 (433)
T KOG1354|consen  313 HEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE  364 (433)
T ss_pred             hHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence            21  1          11110  113446679999999999999997666444

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.25  E-value=6.9e-10  Score=93.43  Aligned_cols=144  Identities=10%  Similarity=0.149  Sum_probs=117.7

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP  122 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~  122 (312)
                      ..++-|...|.|.+|+...+++-             ....-..|.+.|.++.++.+-..|.++ .|..+..|+....   
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it-------------~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---  134 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEIT-------------AKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---  134 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEE-------------EEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---
Confidence            46888999999999999988731             112226789999999998887778775 6999999999877   


Q ss_pred             CCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCC-
Q 021484          123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH-  201 (312)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~-  201 (312)
                                   ...+.+......  +.+++. +|++..+++++  +.|++||+.+++.+..|.+|.++|++++|--. 
T Consensus       135 -------------~~~~~~~~~~~~--~~sl~i-s~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~  196 (541)
T KOG4547|consen  135 -------------VIIRIWKEQKPL--VSSLCI-SPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLI  196 (541)
T ss_pred             -------------eeeeeeccCCCc--cceEEE-cCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEec
Confidence                         666777766644  899998 99999999887  78999999999999999999999999999776 


Q ss_pred             ----CCeEEE-EeCCCcEEEccCCC
Q 021484          202 ----IPMFAT-CGIEKTVKLWAPMP  221 (312)
Q Consensus       202 ----~~~l~t-~~~d~~i~iwd~~~  221 (312)
                          |.++++ ...+.-|.+|-...
T Consensus       197 ~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  197 DGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cccccceeeeccccccceeEEEEEc
Confidence                666544 45677788887654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=4.6e-10  Score=96.76  Aligned_cols=220  Identities=10%  Similarity=0.098  Sum_probs=150.1

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      ...+.|++|+... .++|.|+.||.+++..+.+.........-.....+...+.+.+|...|..+.|+.+.+.|.++ .+
T Consensus        14 nvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            4568899999977 799999999999999988654322222222333344455568999999999999999999998 59


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE-EEee
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV-RLMV  187 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~  187 (312)
                      |.|.+|-+-++                .-...+...++...|.+++| +.+|..+.....||.|.+=.+...+.- +.++
T Consensus        93 GlIiVWmlykg----------------sW~EEMiNnRnKSvV~SmsW-n~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk  155 (1189)
T KOG2041|consen   93 GLIIVWMLYKG----------------SWCEEMINNRNKSVVVSMSW-NLDGTKICIVYEDGAVIVGSVDGNRIWGKELK  155 (1189)
T ss_pred             ceEEEEeeecc----------------cHHHHHhhCcCccEEEEEEE-cCCCcEEEEEEccCCEEEEeeccceecchhcc
Confidence            99999998766                33333444444456999999 999999999999999988877643321 1222


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC--------CCCC----CChhhhhhhhc-------cCCCCceeE
Q 021484          188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF--------PPLP----DNAEKIMKANK-------QGREDHSRI  248 (312)
Q Consensus       188 ~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~--------~~~~----~~~~~~~~~~~-------~~~~~~~l~  248 (312)
                        ......+.|+++.+.++.+-..|.+.+||.+..-.        ....    .....+....|       ..|+...++
T Consensus       156 --g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la  233 (1189)
T KOG2041|consen  156 --GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA  233 (1189)
T ss_pred             --hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE
Confidence              22345788999999988888889999999765311        0000    01111111111       234556777


Q ss_pred             EecCCceEEEEEecccCccce
Q 021484          249 TLTPDVIMHVLRLQRRQTLAY  269 (312)
Q Consensus       249 s~~~d~~i~i~~~~~~~~~~~  269 (312)
                      .+-.+|.+++.+-.+...++.
T Consensus       234 vcy~nGr~QiMR~eND~~Pvv  254 (1189)
T KOG2041|consen  234 VCYANGRMQIMRSENDPEPVV  254 (1189)
T ss_pred             EEEcCceehhhhhcCCCCCeE
Confidence            777788888776544444443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.22  E-value=1.5e-09  Score=94.08  Aligned_cols=156  Identities=12%  Similarity=0.081  Sum_probs=99.0

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y  106 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~  106 (312)
                      ...+.+++|+|++..++++.+.++  .|++|++.+++..               .+ ..+........|+|+|+.|+. +
T Consensus       233 ~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~---------------~l-~~~~~~~~~~~~s~dg~~l~~~s  296 (417)
T TIGR02800       233 PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT---------------RL-TNGPGIDTEPSWSPDGKSIAFTS  296 (417)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE---------------EC-CCCCCCCCCEEECCCCCEEEEEE
Confidence            345667899999954555555554  5888888876421               11 222233446689999986655 3


Q ss_pred             c-CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc---eEEEEeccCC
Q 021484          107 N-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGG  180 (312)
Q Consensus       107 ~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg---~v~iwd~~~~  180 (312)
                      . .+  .|+++++.++                + ...+..+...  .....| +|++++++.++.++   .|.+||+.++
T Consensus       297 ~~~g~~~iy~~d~~~~----------------~-~~~l~~~~~~--~~~~~~-spdg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       297 DRGGSPQIYMMDADGG----------------E-VRRLTFRGGY--NASPSW-SPDGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             CCCCCceEEEEECCCC----------------C-EEEeecCCCC--ccCeEE-CCCCCEEEEEEccCCceEEEEEeCCCC
Confidence            2 33  5888887764                2 2333333322  667788 99999998887765   7999998876


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEccCCCCC
Q 021484          181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTD  223 (312)
Q Consensus       181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~  223 (312)
                      .. ..+... .......|+|+++.|+..+.++   .+.+.+.....
T Consensus       357 ~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~  400 (417)
T TIGR02800       357 GE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF  400 (417)
T ss_pred             Ce-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence            54 333322 2334568999999987776543   45566655443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.19  E-value=6e-09  Score=87.76  Aligned_cols=156  Identities=12%  Similarity=0.134  Sum_probs=102.5

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--cCCcE
Q 021484           34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELV  111 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i  111 (312)
                      ..+.|+|++ +++++.+.||.|.++|+.+.+++.              .+..  ......++++++|++++++  ..+.+
T Consensus        40 ~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~--------------~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v  102 (369)
T PF02239_consen   40 AGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVA--------------TIKV--GGNPRGIAVSPDGKYVYVANYEPGTV  102 (369)
T ss_dssp             EEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEE--------------EEE---SSEEEEEEE--TTTEEEEEEEETTEE
T ss_pred             eEEEecCCC-CEEEEEcCCCeEEEEECCcccEEE--------------EEec--CCCcceEEEcCCCCEEEEEecCCCce
Confidence            457899999 788888899999999999988432              2212  3346789999999988775  49999


Q ss_pred             EEEEcCCCcCCCCCcCCcccccCCCCCceEecccC-----CceeeEEEEecCCCC-EEEEeccCceEEEEeccCCeeEE-
Q 021484          112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-----SQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVR-  184 (312)
Q Consensus       112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~-  184 (312)
                      .++|.++.                +.++.+.....     ...+..+.. ++... ++++.-+.+.|.+.|....+.+. 
T Consensus       103 ~v~D~~tl----------------e~v~~I~~~~~~~~~~~~Rv~aIv~-s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~  165 (369)
T PF02239_consen  103 SVIDAETL----------------EPVKTIPTGGMPVDGPESRVAAIVA-SPGRPEFVVNLKDTGEIWVVDYSDPKNLKV  165 (369)
T ss_dssp             EEEETTT------------------EEEEEE--EE-TTTS---EEEEEE--SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred             eEeccccc----------------cceeecccccccccccCCCceeEEe-cCCCCEEEEEEccCCeEEEEEeccccccce
Confidence            99999886                66666653321     112667766 66666 55566667899999977654432 


Q ss_pred             EeecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCCCC
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTD  223 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~  223 (312)
                      ....-.....+..|+|++++++.+ .....|-++|..+++
T Consensus       166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k  205 (369)
T PF02239_consen  166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK  205 (369)
T ss_dssp             EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             eeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence            222233466789999999996554 467788999988764

...

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=2.4e-09  Score=92.32  Aligned_cols=165  Identities=8%  Similarity=0.072  Sum_probs=96.8

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCC----eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y  106 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~  106 (312)
                      .....+|+|+|..++++...+|    .+..|++..+..      .      ....+...+.......+|+|+|+.|+. +
T Consensus       232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~------g------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s  299 (428)
T PRK01029        232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI------G------KPRRLLNEAFGTQGNPSFSPDGTRLVFVS  299 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC------C------cceEeecCCCCCcCCeEECCCCCEEEEEE
Confidence            3456899999954444443333    344466654310      0      011111222233456799999996665 3


Q ss_pred             -cCCcEEEE--EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC---ceEEEEeccCC
Q 021484          107 -NDELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGG  180 (312)
Q Consensus       107 -~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---g~v~iwd~~~~  180 (312)
                       .++...+|  ++....               ...+.+......  +....| +|+|++|+..+.+   ..|++||+.++
T Consensus       300 ~~~g~~~ly~~~~~~~g---------------~~~~~lt~~~~~--~~~p~w-SPDG~~Laf~~~~~g~~~I~v~dl~~g  361 (428)
T PRK01029        300 NKDGRPRIYIMQIDPEG---------------QSPRLLTKKYRN--SSCPAW-SPDGKKIAFCSVIKGVRQICVYDLATG  361 (428)
T ss_pred             CCCCCceEEEEECcccc---------------cceEEeccCCCC--ccceeE-CCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence             35654444  443210               122333333322  677888 9999988866543   47999999888


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEccCCCCCCCCC
Q 021484          181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPL  227 (312)
Q Consensus       181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~~~~~  227 (312)
                      +.. .+......+....|+|+|+.|+....   ...|.++++.+++...+
T Consensus       362 ~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        362 RDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI  410 (428)
T ss_pred             CeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            754 33333345678999999998765432   35688889887765433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=4.6e-09  Score=91.27  Aligned_cols=158  Identities=13%  Similarity=0.069  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCe--EEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec-C
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEY--ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-D  108 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d  108 (312)
                      ....+|+|++..++++.+.++.  |+++|+.+++..               .+ ..+.......+|+|+|+.|+. +. +
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~---------------~l-t~~~~~~~~p~wSpDG~~I~f~s~~~  327 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT---------------RI-TRHRAIDTEPSWHPDGKSLIFTSERG  327 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE---------------EC-ccCCCCccceEECCCCCEEEEEECCC
Confidence            3468999999545556666775  777787766521               11 223334567899999986655 32 3


Q ss_pred             C--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEeccCCeeE
Q 021484          109 E--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKGGKLV  183 (312)
Q Consensus       109 ~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~~~~~~  183 (312)
                      +  .|+++|+.++                +. ..+.....  .....+| +|+|++|+..+. ++  .|.++|+.+++..
T Consensus       328 g~~~Iy~~dl~~g----------------~~-~~Lt~~g~--~~~~~~~-SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~  387 (448)
T PRK04792        328 GKPQIYRVNLASG----------------KV-SRLTFEGE--QNLGGSI-TPDGRSMIMVNRTNGKFNIARQDLETGAMQ  387 (448)
T ss_pred             CCceEEEEECCCC----------------CE-EEEecCCC--CCcCeeE-CCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence            3  5777777665                22 22221221  1345678 999999877654 33  4666788877643


Q ss_pred             EEeecCccceEEEEEcCCCCeEEEEeC-CC--cEEEccCCCCCCCCCC
Q 021484          184 RLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLP  228 (312)
Q Consensus       184 ~~~~~~~~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~  228 (312)
                       .+... .......|+|+|+.++..+. ++  .+.+++..+.....+.
T Consensus       388 -~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~  433 (448)
T PRK04792        388 -VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP  433 (448)
T ss_pred             -EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence             33322 12234579999998766553 33  3677777655444443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=5.3e-09  Score=87.76  Aligned_cols=151  Identities=11%  Similarity=0.136  Sum_probs=106.9

Q ss_pred             EEEEEcCCCCcEEEEEeC--C---------CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe
Q 021484           34 NAIVIDPRNPNYFAVGGS--D---------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  102 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~~~--d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  102 (312)
                      -.+.|++.+..+|+.++.  |         .++++.++....              +...  ....++|.++.|+|+++-
T Consensus       221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s--------------~~V~--L~k~GPVhdv~W~~s~~E  284 (566)
T KOG2315|consen  221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES--------------VSVP--LLKEGPVHDVTWSPSGRE  284 (566)
T ss_pred             eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce--------------EEEe--cCCCCCceEEEECCCCCE
Confidence            358888877555554432  2         357777776332              1121  223689999999999974


Q ss_pred             EEE--e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---CceEEEEe
Q 021484          103 LIS--Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWK  176 (312)
Q Consensus       103 l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---dg~v~iwd  176 (312)
                      ++.  | .-..+.|||++..                 ++..+.  .++  -.++-| +|.|++|+.++.   -|.|-|||
T Consensus       285 F~VvyGfMPAkvtifnlr~~-----------------~v~df~--egp--RN~~~f-np~g~ii~lAGFGNL~G~mEvwD  342 (566)
T KOG2315|consen  285 FAVVYGFMPAKVTIFNLRGK-----------------PVFDFP--EGP--RNTAFF-NPHGNIILLAGFGNLPGDMEVWD  342 (566)
T ss_pred             EEEEEecccceEEEEcCCCC-----------------EeEeCC--CCC--ccceEE-CCCCCEEEEeecCCCCCceEEEe
Confidence            444  3 4889999999753                 443332  222  456666 999999988765   67899999


Q ss_pred             ccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC------CCcEEEccCCCCCC
Q 021484          177 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDF  224 (312)
Q Consensus       177 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~------d~~i~iwd~~~~~~  224 (312)
                      ..+.+++..+..-.  -+-+.|+|+|.+|+|+..      |..++||+..+..+
T Consensus       343 v~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l  394 (566)
T KOG2315|consen  343 VPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL  394 (566)
T ss_pred             ccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence            99988888877543  355889999999988873      68899999887654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=6.9e-09  Score=90.23  Aligned_cols=155  Identities=12%  Similarity=0.041  Sum_probs=94.6

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec-
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-  107 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-  107 (312)
                      .+...+|+|++..++++...+|  .|++||+.+++..               .+ ..+........|+|+|+.++. +. 
T Consensus       244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~---------------~l-t~~~~~~~~~~~spDg~~i~f~s~~  307 (430)
T PRK00178        244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS---------------RV-TNHPAIDTEPFWGKDGRTLYFTSDR  307 (430)
T ss_pred             CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE---------------Ec-ccCCCCcCCeEECCCCCEEEEEECC
Confidence            3457899999944444555555  5888898876521               11 223334556789999986554 32 


Q ss_pred             CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC-c--eEEEEeccCCee
Q 021484          108 DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKKGGKL  182 (312)
Q Consensus       108 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d-g--~v~iwd~~~~~~  182 (312)
                      ++  .|+++++.++                +. ..+.....  ......| +|++++|+..+.+ +  .|.++|+.+++.
T Consensus       308 ~g~~~iy~~d~~~g----------------~~-~~lt~~~~--~~~~~~~-Spdg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        308 GGKPQIYKVNVNGG----------------RA-ERVTFVGN--YNARPRL-SADGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             CCCceEEEEECCCC----------------CE-EEeecCCC--CccceEE-CCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence            33  5777787665                22 22221111  1345677 9999998776543 3  588899988764


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCC
Q 021484          183 VRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDF  224 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~  224 (312)
                      . .+. +........|+|+|+.++..+.+   ..|.++++.+...
T Consensus       368 ~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~  410 (430)
T PRK00178        368 R-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR  410 (430)
T ss_pred             E-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence            3 332 22223356899999997766533   3466777765443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.13  E-value=2.8e-10  Score=95.46  Aligned_cols=205  Identities=10%  Similarity=0.102  Sum_probs=140.7

Q ss_pred             CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      +-||...|..++--.+. +-+++++.|.+|++|.++...       ++.-..-|..++ ..|..+|.++.|-.+.+++++
T Consensus       731 f~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~Eg-------D~~~tsaCQfTY-~aHkk~i~~igfL~~lr~i~S  801 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEG-------DEIGTSACQFTY-QAHKKPIHDIGFLADLRSIAS  801 (1034)
T ss_pred             ccCcHHHhHHHHhcccc-cceeeccCCceEEEEEecccc-------CccccceeeeEh-hhccCcccceeeeeccceeee
Confidence            35799999988766655 789999999999999997432       111112233344 789999999999888776665


Q ss_pred             ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe---cccCCceeeEEEEecCCCCEEEEe-ccCceEEEEeccCCe
Q 021484          106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGK  181 (312)
Q Consensus       106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~s~~~~~l~~~-~~dg~v~iwd~~~~~  181 (312)
                      + |+.|.+||.--+                .++..+.   .+.....|.++-  +-+...+.+| +...+|+++|.+.++
T Consensus       802 c-D~giHlWDPFig----------------r~Laq~~dapk~~a~~~ikcl~--nv~~~iliAgcsaeSTVKl~DaRsce  862 (1034)
T KOG4190|consen  802 C-DGGIHLWDPFIG----------------RLLAQMEDAPKEGAGGNIKCLE--NVDRHILIAGCSAESTVKLFDARSCE  862 (1034)
T ss_pred             c-cCcceeeccccc----------------chhHhhhcCcccCCCceeEecc--cCcchheeeeccchhhheeeeccccc
Confidence            4 788999997655                3333222   122222355543  3345555554 789999999999988


Q ss_pred             eEEEeec-----CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCce
Q 021484          182 LVRLMVG-----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVI  255 (312)
Q Consensus       182 ~~~~~~~-----~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  255 (312)
                      ....++.     ..+.+.+++..|.|+.++++-..|.|.+.|.+++. +..........+..+  .+.+..++....|..
T Consensus       863 ~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla--apsdq~L~~saldHs  940 (1034)
T KOG4190|consen  863 WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA--APSDQALAQSALDHS  940 (1034)
T ss_pred             ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc--CchhHHHHhhcccce
Confidence            7777653     34568899999999999999999999999999998 454554444444443  233445555556666


Q ss_pred             EEE-EE
Q 021484          256 MHV-LR  260 (312)
Q Consensus       256 i~i-~~  260 (312)
                      +.+ |-
T Consensus       941 laVnWh  946 (1034)
T KOG4190|consen  941 LAVNWH  946 (1034)
T ss_pred             eEeeeh
Confidence            665 53

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.12  E-value=2.1e-08  Score=91.54  Aligned_cols=197  Identities=13%  Similarity=0.127  Sum_probs=118.3

Q ss_pred             CeeecccCccce-eeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecC-------CCC--
Q 021484            1 MWQFDLRSDSAT-RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS-------PIS--   70 (312)
Q Consensus         1 v~~wd~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~--   70 (312)
                      ||+||+++-... ...++.     ..|+.-..++.++...+.+ ..+|.++.||.|++.++.......       ..+  
T Consensus      1073 VKvW~~~k~~~~~~s~rS~-----ltys~~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~ 1146 (1431)
T KOG1240|consen 1073 VKVWNLRKLEGEGGSARSE-----LTYSPEGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK 1146 (1431)
T ss_pred             EEEeeehhhhcCcceeeee-----EEEeccCCceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccceeeeeeccccc
Confidence            689999865433 222221     1121135689999999988 899999999999999987521110       000  


Q ss_pred             CCCCccccc-------c----c-------c-------------cccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCC
Q 021484           71 SDTPVDTFC-------P----R-------H-------------LIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNM  118 (312)
Q Consensus        71 ~~~~~~~~~-------~----~-------~-------------~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~  118 (312)
                      .+..+-.+.       .    .       .             ......+.|++++.+|.+..++.| +.|.+.+||++=
T Consensus      1147 ~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred             CCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence            011110000       0    0       0             001124679999999999988887 599999999975


Q ss_pred             CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC---CCEEEEec--cCceEEEEeccCCeeEEEeecC-cc-
Q 021484          119 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---DEYVMSGS--DCGHLFIWKKKGGKLVRLMVGD-RH-  191 (312)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~---~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~-~~-  191 (312)
                      +                .++.... |....++..+.. .|.   ....++++  ..+.|-+|++.+|.+-..+... .. 
T Consensus      1227 ~----------------~~i~sw~-~P~~~~i~~v~~-~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p 1288 (1431)
T KOG1240|consen 1227 R----------------VPILSWE-HPARAPIRHVWL-CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAP 1288 (1431)
T ss_pred             C----------------ceeeccc-CcccCCcceEEe-eccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCc
Confidence            5                3333332 222233666655 332   24554444  5788999999988766555432 10 


Q ss_pred             -----------------ceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          192 -----------------VVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       192 -----------------~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                                       ......+..-+..+++|+.|..||.||...
T Consensus      1289 ~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1289 ILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             chhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence                             111122333345788999999999999653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.12  E-value=1.9e-07  Score=74.75  Aligned_cols=216  Identities=14%  Similarity=0.153  Sum_probs=129.9

Q ss_pred             CccceEEEEEcCCCCcEEEEEeC---CCeEEEEEccC--CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  103 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  103 (312)
                      +...++-++|+|+. +.|.++..   +|.|.-|.+..  +++.           +.......  ..+.+.++++++|+++
T Consensus        38 ~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt-----------~ln~~~~~--g~~p~yvsvd~~g~~v  103 (346)
T COG2706          38 ELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLT-----------FLNRQTLP--GSPPCYVSVDEDGRFV  103 (346)
T ss_pred             ccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEE-----------EeeccccC--CCCCeEEEECCCCCEE
Confidence            35567889999988 67777643   57888888774  4421           11111112  2333789999999988


Q ss_pred             EEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC--------ceeeEEEEecCCCCEEEEecc-CceE
Q 021484          104 ISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--------QTVKGVNFFGPNDEYVMSGSD-CGHL  172 (312)
Q Consensus       104 ~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~v~~~s~~~~~l~~~~~-dg~v  172 (312)
                      +++  ..|.|.++-++..... .           ...+... |...        ..+....+ .|++++|++... --+|
T Consensus       104 f~AnY~~g~v~v~p~~~dG~l-~-----------~~v~~~~-h~g~~p~~rQ~~~h~H~a~~-tP~~~~l~v~DLG~Dri  169 (346)
T COG2706         104 FVANYHSGSVSVYPLQADGSL-Q-----------PVVQVVK-HTGSGPHERQESPHVHSANF-TPDGRYLVVPDLGTDRI  169 (346)
T ss_pred             EEEEccCceEEEEEcccCCcc-c-----------cceeeee-cCCCCCCccccCCccceeee-CCCCCEEEEeecCCceE
Confidence            876  4899999999663100 0           0111111 1110        11566777 999999988764 3478


Q ss_pred             EEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCC--CCCC------CCCCC--hhhhhhhh
Q 021484          173 FIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMP--TDFP------PLPDN--AEKIMKAN  238 (312)
Q Consensus       173 ~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~--~~~~------~~~~~--~~~~~~~~  238 (312)
                      .+|++..|+....-.   ........++|||++++.... -.+++|-+|....  +++.      +++..  ...-....
T Consensus       170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI  249 (346)
T COG2706         170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI  249 (346)
T ss_pred             EEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence            899998776532211   223456889999999995544 4799999998776  3322      22211  11111223


Q ss_pred             ccCCCCceeEEecCC-ceEEEEEeccc-CccceeEe
Q 021484          239 KQGREDHSRITLTPD-VIMHVLRLQRR-QTLAYRER  272 (312)
Q Consensus       239 ~~~~~~~~l~s~~~d-~~i~i~~~~~~-~~~~~~~~  272 (312)
                      ..++++++|.+.... ..|-++.+... ..+...+.
T Consensus       250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~  285 (346)
T COG2706         250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI  285 (346)
T ss_pred             EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE
Confidence            355678888765543 56677776654 23444333

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.11  E-value=7.8e-10  Score=85.57  Aligned_cols=164  Identities=13%  Similarity=0.132  Sum_probs=113.0

Q ss_pred             CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEcc-CCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeE
Q 021484           26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELL  103 (312)
Q Consensus        26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l  103 (312)
                      |.+|..++...+|+...++++.+|+.|+.+..||++ .++              +..+-...|...|.+|.-+|. +.++
T Consensus       161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~--------------~i~~n~kvH~~GV~SI~ss~~~~~~I  226 (339)
T KOG0280|consen  161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT--------------FIWHNSKVHTSGVVSIYSSPPKPTYI  226 (339)
T ss_pred             ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc--------------eeeecceeeecceEEEecCCCCCceE
Confidence            456899999999999888999999999999999999 222              122212567888999988875 4589


Q ss_pred             EEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCe
Q 021484          104 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       104 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~  181 (312)
                      ++|+ |..|++||.++..               +++.  ++... +-|..+.+ +|.- ..++.++...-.+|-+...+.
T Consensus       227 ~TGsYDe~i~~~DtRnm~---------------kPl~--~~~v~-GGVWRi~~-~p~~~~~lL~~CMh~G~ki~~~~~~~  287 (339)
T KOG0280|consen  227 ATGSYDECIRVLDTRNMG---------------KPLF--KAKVG-GGVWRIKH-HPEIFHRLLAACMHNGAKILDSSDKV  287 (339)
T ss_pred             EEeccccceeeeehhccc---------------Cccc--cCccc-cceEEEEe-cchhhhHHHHHHHhcCceEEEecccc
Confidence            9986 9999999998642               2322  21211 23999998 5643 344555555566777765432


Q ss_pred             -----eEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEE-EccCCCC
Q 021484          182 -----LVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVK-LWAPMPT  222 (312)
Q Consensus       182 -----~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~-iwd~~~~  222 (312)
                           .....+.|.+-++.-.|......+||++ .|+.++ +|-.-++
T Consensus       288 ~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  288 LEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             cchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence                 2334456777777778855556788887 677755 7754443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.11  E-value=1.8e-08  Score=79.82  Aligned_cols=177  Identities=14%  Similarity=0.221  Sum_probs=125.1

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  107 (312)
                      -+.+++++.+++.. +.|+.|-.+|++.-+.+...-.           ..........|...+..+-|+-..+.+++. .
T Consensus        67 mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfn-----------km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~  134 (404)
T KOG1409|consen   67 MPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFN-----------KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK  134 (404)
T ss_pred             CCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhh-----------hcchhhhhhhhhcceeeEEecCCceeEEEecc
Confidence            36789999999987 8999999999999888763310           001122225788888888888777766664 4


Q ss_pred             CCcEEEEEcCCCcC-----------CCCC------------cCCc--ccccCCCCCceEecccCCceeeEEEEecCCCCE
Q 021484          108 DELVYLFEKNMGLG-----------PSPL------------SLSP--EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY  162 (312)
Q Consensus       108 d~~i~iwd~~~~~~-----------~~~~------------~~~~--~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~  162 (312)
                      |..+.---.+.+.+           +...            .+..  -......++.++.+|...  +.+++| .+....
T Consensus       135 dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~--~~~l~W-d~~~~~  211 (404)
T KOG1409|consen  135 DKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE--VTCLKW-DPGQRL  211 (404)
T ss_pred             ccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccc--eEEEEE-cCCCcE
Confidence            55544333332220           0000            0000  002333556777888876  999999 999999


Q ss_pred             EEEeccCceEEEEeccCCee-EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484          163 VMSGSDCGHLFIWKKKGGKL-VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  220 (312)
Q Consensus       163 l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  220 (312)
                      |++|..|..+.+||+--.+- ...+.+|...|..+...+.-+.+.+++.||.|.+|+..
T Consensus       212 LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  212 LFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             EEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            99999999999999864432 34667899999999888888889999999999999975

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.10  E-value=1.8e-09  Score=86.94  Aligned_cols=159  Identities=14%  Similarity=0.262  Sum_probs=107.7

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec---
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN---  107 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~---  107 (312)
                      .+..+..+|.+ +++|.+..+....++++.....     ....+..++.       ....+++.|-.+.. .+++-.   
T Consensus        64 a~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~-----~~kl~~~~~v-------~~~~~ai~~~~~~~sv~v~dkagD  130 (390)
T KOG3914|consen   64 APALVLTSDSG-RLVAVATSSKQRAVFDYRENPK-----GAKLLDVSCV-------PKRPTAISFIREDTSVLVADKAGD  130 (390)
T ss_pred             cccccccCCCc-eEEEEEeCCCceEEEEEecCCC-----cceeeeEeec-------ccCcceeeeeeccceEEEEeecCC
Confidence            34456667777 8999998888887888765431     0111111121       12233444444443 333322   


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe-
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-  186 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-  186 (312)
                      ...+.+|....+                 ....+-||...  ++.|++ +||+++++++..|..|++-.+.....+..+ 
T Consensus       131 ~~~~di~s~~~~-----------------~~~~~lGhvSm--l~dVav-S~D~~~IitaDRDEkIRvs~ypa~f~Iesfc  190 (390)
T KOG3914|consen  131 VYSFDILSADSG-----------------RCEPILGHVSM--LLDVAV-SPDDQFIITADRDEKIRVSRYPATFVIESFC  190 (390)
T ss_pred             ceeeeeeccccc-----------------Ccchhhhhhhh--hheeee-cCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence            344555554433                 34456688865  999999 999999999999999999887765555555 


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      -+|+.-|..++.-++. .|+++|.|++|++||+.+++.
T Consensus       191 lGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  191 LGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             cccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCc
Confidence            4799999999987764 489999999999999998763

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.07  E-value=4.5e-08  Score=80.96  Aligned_cols=173  Identities=13%  Similarity=0.082  Sum_probs=124.5

Q ss_pred             EcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC-cEEEEE
Q 021484           38 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE-LVYLFE  115 (312)
Q Consensus        38 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~-~i~iwd  115 (312)
                      |++-.+.+++..|. |...+.+...+-.                 +..+|...|.-..+..+++-++.+ .|| .+-|||
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-----------------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd  388 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-----------------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYD  388 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCee-----------------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEe
Confidence            44433378888775 7777777664431                 114566778888888888755555 576 899999


Q ss_pred             cCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEE
Q 021484          116 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ  195 (312)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~  195 (312)
                      ..++                 .++.+...-+.  |.++.. +++|++++++.....|.+.|+.++.....=+...+-|+.
T Consensus       389 ~~~~-----------------e~kr~e~~lg~--I~av~v-s~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItd  448 (668)
T COG4946         389 KDGG-----------------EVKRIEKDLGN--IEAVKV-SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITD  448 (668)
T ss_pred             cCCc-----------------eEEEeeCCccc--eEEEEE-cCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEE
Confidence            9986                 55566655544  999998 999999999999999999999999876554555678999


Q ss_pred             EEEcCCCCeEEEEeCCC----cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEE
Q 021484          196 LEPHPHIPMFATCGIEK----TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT  249 (312)
Q Consensus       196 ~~~~p~~~~l~t~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  249 (312)
                      +.|||+++++|-+--+|    .|+++|+.++++.........-++. .+.+++++|.-
T Consensus       449 f~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsP-aFD~d~ryLYf  505 (668)
T COG4946         449 FDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSP-AFDPDGRYLYF  505 (668)
T ss_pred             EEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCc-ccCCCCcEEEE
Confidence            99999999999887665    6899999998864433222211122 24556666544

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.06  E-value=9.5e-09  Score=81.42  Aligned_cols=227  Identities=15%  Similarity=0.196  Sum_probs=133.6

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-----cCCCCCCC-CcccccccccccCCCccEEEEEEccCCC--
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHW-----YSPISSDT-PVDTFCPRHLIGKNNIHITGLAYSNTSE--  101 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~--  101 (312)
                      ..-|.++.|...| .+||||..+|.|.+|.-....-     ....+... ....+  +.  ..-...|..+.|.+++.  
T Consensus        25 adiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYL--kS--leieEKinkIrw~~~~n~a   99 (433)
T KOG1354|consen   25 ADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYL--KS--LEIEEKINKIRWLDDGNLA   99 (433)
T ss_pred             hcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchh--hh--hhhhhhhhhceecCCCCcc
Confidence            3468899999999 8999999999999997543221     00000000 00000  00  01246788999999875  


Q ss_pred             -eEEEecCCcEEEEEcCCCcCCCC-------------CcCCcccccCC------CCCceEe-cccCCceeeEEEEecCCC
Q 021484          102 -LLISYNDELVYLFEKNMGLGPSP-------------LSLSPEDLQKR------EEPQVYS-GHRNSQTVKGVNFFGPND  160 (312)
Q Consensus       102 -~l~s~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~~~~------~~~~~~~-~~~~~~~v~~v~~~s~~~  160 (312)
                       +|+++.|.+|++|.+........             .+++.--+...      .+.+.+. .|.  -.|.++++ +.++
T Consensus       100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt--yhiNSIS~-NsD~  176 (433)
T KOG1354|consen  100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT--YHINSISV-NSDK  176 (433)
T ss_pred             EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce--eEeeeeee-cCcc
Confidence             77778999999999865431110             00000001110      1112221 233  33899998 7888


Q ss_pred             CEEEEeccCceEEEEeccCC-ee--EEEeecC-----ccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCCC-------C
Q 021484          161 EYVMSGSDCGHLFIWKKKGG-KL--VRLMVGD-----RHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTD-------F  224 (312)
Q Consensus       161 ~~l~~~~~dg~v~iwd~~~~-~~--~~~~~~~-----~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~-------~  224 (312)
                      +.++++ .|=.|.+|++.-. +.  +..++.+     +.-|++..|||.. ..|+-.+.-|+|++-|++...       +
T Consensus       177 Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl  255 (433)
T KOG1354|consen  177 ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL  255 (433)
T ss_pred             ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence            887775 5788999997632 22  2223333     3468899999975 557778889999999998432       1


Q ss_pred             CCCCCC------hhhh---hhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484          225 PPLPDN------AEKI---MKANKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       225 ~~~~~~------~~~~---~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      ...+..      -..+   +....++.+++++++- .=.++++||++....
T Consensus       256 fEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dyltvk~wD~nme~~  305 (433)
T KOG1354|consen  256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DYLTVKLWDLNMEAK  305 (433)
T ss_pred             hccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-ccceeEEEeccccCC
Confidence            111100      0111   2344455566776653 226899999865433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.05  E-value=3.5e-08  Score=83.13  Aligned_cols=186  Identities=12%  Similarity=0.118  Sum_probs=116.8

Q ss_pred             cEE-EEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcC
Q 021484           44 NYF-AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLG  121 (312)
Q Consensus        44 ~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~  121 (312)
                      +++ ++-..++.|.+.|..+.+.+              ..+ .........+.++|+|+++..+ .|+.|.++|+.+.  
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~--------------~~i-~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--   68 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVV--------------ARI-PTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--   68 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEE--------------EEE-E-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--
T ss_pred             cEEEEEecCCCEEEEEECCCCeEE--------------EEE-cCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--
Confidence            455 45567899999999988732              222 2222234457899999977665 6999999999987  


Q ss_pred             CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEEeccCCeeEEEeecC-------ccce
Q 021484          122 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGD-------RHVV  193 (312)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-------~~~v  193 (312)
                                    +.+..++...   ...++++ +++|+++++++ ..+.+.++|..+.++++.+...       ..++
T Consensus        69 --------------~~v~~i~~G~---~~~~i~~-s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv  130 (369)
T PF02239_consen   69 --------------KVVATIKVGG---NPRGIAV-SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRV  130 (369)
T ss_dssp             --------------SEEEEEE-SS---EEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---E
T ss_pred             --------------cEEEEEecCC---CcceEEE-cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCc
Confidence                          6776766433   2688998 99999998775 6899999999999999888643       2467


Q ss_pred             EEEEEcCCCCeEEEEeCC-CcEEEccCCCCCCCCC-CCChhhhhhhhccCCCCceeEE-ecCCceEEEEEeccc
Q 021484          194 NQLEPHPHIPMFATCGIE-KTVKLWAPMPTDFPPL-PDNAEKIMKANKQGREDHSRIT-LTPDVIMHVLRLQRR  264 (312)
Q Consensus       194 ~~~~~~p~~~~l~t~~~d-~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~i~~~~~~  264 (312)
                      ..+..+|..+.++..-.| +.|.+-|......... .......+....+.+++++++. ...+..+-++|..+.
T Consensus       131 ~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~  204 (369)
T PF02239_consen  131 AAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG  204 (369)
T ss_dssp             EEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             eeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence            788889998876666554 7787778665432110 0112222334456777776544 555678888886655

...

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.04  E-value=2.4e-09  Score=81.56  Aligned_cols=205  Identities=14%  Similarity=0.156  Sum_probs=117.5

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccc-cccCCCccEEEEEEccCCCeEEEec------CCcEEEEEc
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH-LIGKNNIHITGLAYSNTSELLISYN------DELVYLFEK  116 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~------d~~i~iwd~  116 (312)
                      +.++++..||.+.+++.+...              .... +...|.+ -.+.+....++++.++.      -+..+.|++
T Consensus       102 t~V~~~~~dg~~~v~s~~~~~--------------~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~  166 (319)
T KOG4714|consen  102 NRVCIGYADGSLAVFSTDKDL--------------ALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTL  166 (319)
T ss_pred             CceEecCCCceEEEEechHHH--------------hhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecc
Confidence            579999999999999987521              0000 0011111 11223333444444432      344566666


Q ss_pred             CCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccCCe-eEEEeecCccceE
Q 021484          117 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVN  194 (312)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~  194 (312)
                      +..                +....  .+.....|++++- +|. .+.+++|+.||.+.+||.+... +...++.|+..+.
T Consensus       167 ~p~----------------~t~~~--~~~~~~~v~~l~~-hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~  227 (319)
T KOG4714|consen  167 DPI----------------KTLIP--SKKALDAVTALCS-HPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIW  227 (319)
T ss_pred             ccc----------------ccccc--cccccccchhhhC-CcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhh
Confidence            432                12111  1222223888887 565 5567888999999999998764 3455678999999


Q ss_pred             EEEEcCCCC-eEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCccceeEee
Q 021484          195 QLEPHPHIP-MFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERR  273 (312)
Q Consensus       195 ~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~  273 (312)
                      .+-|||... .|+++++||.+-.||..+..+. +. ....+        ...+|-.-.....+.+-.+..........+.
T Consensus       228 eV~FHpk~p~~Lft~sedGslw~wdas~~~l~-i~-~~~s~--------~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD  297 (319)
T KOG4714|consen  228 EVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS-IS-NQASV--------ISSWLSGDPVKSRIEITSLLPSRSLSINSFD  297 (319)
T ss_pred             heeccCCCchheeEecCCCcEEEEcCCCceEE-ec-Ccccc--------ccccccCCcccceEeeeccccccceeeeeee
Confidence            999999655 5999999999999998763322 11 11111        1112222222233444433333233333444


Q ss_pred             cCCCccCCCCCCCeEEEee
Q 021484          274 YNAADFESDEEEGETYLLG  292 (312)
Q Consensus       274 ~~~~~~~~~~~~~~v~~~~  292 (312)
                      .-+..+..+.+.+.+|+.+
T Consensus       298 V~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  298 VLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ccCceEEeccccceEEEec
Confidence            4456666777777777764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=1.9e-07  Score=78.66  Aligned_cols=198  Identities=16%  Similarity=0.213  Sum_probs=128.8

Q ss_pred             CccceEEEEEcCC-CCcEEEE-----EeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-
Q 021484           29 NSIRLNAIVIDPR-NPNYFAV-----GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-  101 (312)
Q Consensus        29 h~~~v~~~~~~p~-~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  101 (312)
                      |..+|+.+.++|. .+..+|+     ++.-..++||........      .++   ..+.++.   ..-..+.|++-|. 
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~------~~~---a~ksFFk---adkvqm~WN~~gt~  231 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH------QPV---ANKSFFK---ADKVQMKWNKLGTA  231 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc------chh---hhccccc---cceeEEEeccCCce
Confidence            5678999999996 3345555     355678999988733211      011   1112212   2223678998886 


Q ss_pred             --eEEEec-CC---------cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE--ec
Q 021484          102 --LLISYN-DE---------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS--GS  167 (312)
Q Consensus       102 --~l~s~~-d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~--~~  167 (312)
                        +|++.. |.         ++++.++.+.                .....+. ..  ++|.++.| ++++..+++  |-
T Consensus       232 LLvLastdVDktn~SYYGEq~Lyll~t~g~----------------s~~V~L~-k~--GPVhdv~W-~~s~~EF~VvyGf  291 (566)
T KOG2315|consen  232 LLVLASTDVDKTNASYYGEQTLYLLATQGE----------------SVSVPLL-KE--GPVHDVTW-SPSGREFAVVYGF  291 (566)
T ss_pred             EEEEEEEeecCCCccccccceEEEEEecCc----------------eEEEecC-CC--CCceEEEE-CCCCCEEEEEEec
Confidence              233333 54         4788887632                2222221 23  45999999 899977654  45


Q ss_pred             cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEccCCCCCCCCCCCChhhhhhhhccCCCC
Q 021484          168 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGRED  244 (312)
Q Consensus       168 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
                      +--.+.|||++ +.++..+.  .++=+++-|+|.|++++.+|.   -|.|-|||..+.+...-....+.  ....|++++
T Consensus       292 MPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdG  366 (566)
T KOG2315|consen  292 MPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDG  366 (566)
T ss_pred             ccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCC
Confidence            67789999997 78887775  456678999999999887774   48999999988664322222222  334589999


Q ss_pred             ceeEEecC------CceEEEEEecc
Q 021484          245 HSRITLTP------DVIMHVLRLQR  263 (312)
Q Consensus       245 ~~l~s~~~------d~~i~i~~~~~  263 (312)
                      .++++++.      |+.++||+...
T Consensus       367 e~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  367 EYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             cEEEEEeccccEEecCCeEEEEecC
Confidence            99887665      57889998653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.02  E-value=1.1e-09  Score=60.36  Aligned_cols=39  Identities=26%  Similarity=0.491  Sum_probs=36.9

Q ss_pred             CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021484          180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA  218 (312)
Q Consensus       180 ~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd  218 (312)
                      ++++.++.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.01  E-value=8.1e-09  Score=83.30  Aligned_cols=161  Identities=8%  Similarity=0.048  Sum_probs=104.5

Q ss_pred             EEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC
Q 021484           91 ITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC  169 (312)
Q Consensus        91 i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d  169 (312)
                      ...+..++.++++|.+ ++....+++......            ..++...+.....+..+..+.. +......-.+++.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~------------~~kl~~~~~v~~~~~ai~~~~~-~~sv~v~dkagD~  131 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK------------GAKLLDVSCVPKRPTAISFIRE-DTSVLVADKAGDV  131 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC------------cceeeeEeecccCcceeeeeec-cceEEEEeecCCc
Confidence            4455677888888887 577777777765410            1134444444444333444443 3333333345556


Q ss_pred             ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC-CCCCCCCC-CChhhhhhhhccCCCCcee
Q 021484          170 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PTDFPPLP-DNAEKIMKANKQGREDHSR  247 (312)
Q Consensus       170 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l  247 (312)
                      ..+.+|....+.+ ..+.+|-..+++|+|+||+++++|+..|..||+-... ...+..+. +|..-+-... . .++..|
T Consensus       132 ~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is-l-~~~~~L  208 (390)
T KOG3914|consen  132 YSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS-L-TDNYLL  208 (390)
T ss_pred             eeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee-e-ccCcee
Confidence            6677776665443 4456899999999999999999999999999996544 33444443 4555543222 2 244568


Q ss_pred             EEecCCceEEEEEecccCcc
Q 021484          248 ITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       248 ~s~~~d~~i~i~~~~~~~~~  267 (312)
                      ++++.|+++++||+.++..+
T Consensus       209 lS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  209 LSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             eecCCCCcEEEEecccCCcc
Confidence            99999999999999887554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.01  E-value=1.1e-07  Score=90.39  Aligned_cols=229  Identities=9%  Similarity=0.100  Sum_probs=129.0

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccc-ccCCCccEEEEEEcc-CCCeEEEe-cC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSN-TSELLISY-ND  108 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~s~-~d  108 (312)
                      ....+++++++..++++-..++.|+.+|+.++.+............+..... ....-.....++++| ++.++++. .+
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            4578999998733444445668899999877653211110000000000000 000012345889999 45566664 68


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCE-EEEeccCceEEEEeccCCeeEEEee
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~  187 (312)
                      +.|++||..++....   +....... .................+++ +|+++. +++-+.++.|++||+.++.......
T Consensus       705 ~~I~v~d~~~g~v~~---~~G~G~~~-~~~g~~~~~~~~~~P~GIav-spdG~~LYVADs~n~~Irv~D~~tg~~~~~~g  779 (1057)
T PLN02919        705 HQIWEYNISDGVTRV---FSGDGYER-NLNGSSGTSTSFAQPSGISL-SPDLKELYIADSESSSIRALDLKTGGSRLLAG  779 (1057)
T ss_pred             CeEEEEECCCCeEEE---EecCCccc-cCCCCccccccccCccEEEE-eCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence            999999987652000   00000000 00000000000012567898 898884 4566678999999998765321110


Q ss_pred             c-------------C--------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChh-------------h
Q 021484          188 G-------------D--------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAE-------------K  233 (312)
Q Consensus       188 ~-------------~--------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-------------~  233 (312)
                      +             +        -.....++++++|..+++-..++.|++||+.++.+..+.+...             .
T Consensus       780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~  859 (1057)
T PLN02919        780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS  859 (1057)
T ss_pred             cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC
Confidence            0             0        1134688999999998888899999999998765433221110             0


Q ss_pred             hhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          234 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       234 ~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      ...-....++++.+++-+.++.|++|++.+..
T Consensus       860 ~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        860 EPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            11122345678889999999999999987754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=3.2e-07  Score=78.84  Aligned_cols=176  Identities=13%  Similarity=0.075  Sum_probs=106.2

Q ss_pred             ceEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec
Q 021484           32 RLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN  107 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~  107 (312)
                      ......|+|++..+++..+.   +..|.++|+.+++..               .+ ....+......|+|||+.++. ..
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---------------~l-t~~~g~~~~~~~SPDG~~la~~~~  252 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---------------KI-ASSQGMLVVSDVSKDGSKLLLTMA  252 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---------------EE-ecCCCcEEeeEECCCCCEEEEEEc
Confidence            56789999999544554333   356888999877521               11 112344556789999985543 32


Q ss_pred             ---CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEeccCCe
Q 021484          108 ---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKGGK  181 (312)
Q Consensus       108 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~~~~  181 (312)
                         +..|+++|+.++                . .+.+..+...  .....| +|+|+.|+..+. .+  .|++.|+.+++
T Consensus       253 ~~g~~~Iy~~dl~~g----------------~-~~~LT~~~~~--d~~p~~-SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~  312 (419)
T PRK04043        253 PKGQPDIYLYDTNTK----------------T-LTQITNYPGI--DVNGNF-VEDDKRIVFVSDRLGYPNIFMKKLNSGS  312 (419)
T ss_pred             cCCCcEEEEEECCCC----------------c-EEEcccCCCc--cCccEE-CCCCCEEEEEECCCCCceEEEEECCCCC
Confidence               457888898765                2 3333333321  234568 999987766553 23  68888888777


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeCC---------CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeE
Q 021484          182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIE---------KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRI  248 (312)
Q Consensus       182 ~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  248 (312)
                      ..+.... ..  ....|+|+|+.++..+..         ..|.+.|+.++....+....  ......|+++++.++
T Consensus       313 ~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~--~~~~p~~SPDG~~I~  383 (419)
T PRK04043        313 VEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG--VNQFPRFSSDGGSIM  383 (419)
T ss_pred             eEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC--CcCCeEECCCCCEEE
Confidence            6433321 11  134899999997766643         26788888887755554321  111233566665444

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.97  E-value=4e-07  Score=70.11  Aligned_cols=190  Identities=10%  Similarity=-0.009  Sum_probs=119.2

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--CeEEEecCCcEEEEEcCCCcC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISYNDELVYLFEKNMGLG  121 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~d~~i~iwd~~~~~~  121 (312)
                      .+||.|+..|...+|...+.+.              ...+...|...|+-+.-.-+.  .+++++.|.++++.++..+  
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~--------------h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~--  148 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDG--------------HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGD--  148 (344)
T ss_pred             cEEEeccccceeeeecccCccc--------------ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecC--
Confidence            4789999999999999987651              111112222322222111122  3566667888888888764  


Q ss_pred             CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeE-EEee-cCccceEEEEE
Q 021484          122 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLV-RLMV-GDRHVVNQLEP  198 (312)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~-~~~~-~~~~~v~~~~~  198 (312)
                                    ......  |.....+.++++ +++++++++.+....|..|.+... +.+ .... ..+..-.+..|
T Consensus       149 --------------s~~~~~--h~~~~~~ns~~~-snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~  211 (344)
T KOG4532|consen  149 --------------SNKFAV--HNQNLTQNSLHY-SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF  211 (344)
T ss_pred             --------------ccccee--eccccceeeeEE-cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence                          222222  222123788998 999999999999999999987643 222 2122 22334467889


Q ss_pred             cCCCCeEEEEeCCCcEEEccCCCCCC-----CCCCCChhhhhhhhccCCC--CceeEEecCCceEEEEEecccCc
Q 021484          199 HPHIPMFATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGRE--DHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       199 ~p~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      +.....+|++..||++.|||++....     ..-..+.+..+....+++-  -.+|+-.-.-+.+.+.|++....
T Consensus       212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  212 SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN  286 (344)
T ss_pred             ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence            99999999999999999999986532     2222345555555555542  22343334447788888876543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.95  E-value=6.9e-07  Score=75.23  Aligned_cols=201  Identities=12%  Similarity=0.117  Sum_probs=120.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeC----CCeEEEEEccCC--eecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           32 RLNAIVIDPRNPNYFAVGGS----DEYARVYDIRKC--HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~----dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      ...-++++|++ ++|++...    ++.|..|.+...  ++.            ..... .........++++|++++|++
T Consensus        38 ~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~------------~~~~~-~~~g~~p~~i~~~~~g~~l~v  103 (345)
T PF10282_consen   38 NPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLT------------LLNSV-PSGGSSPCHIAVDPDGRFLYV  103 (345)
T ss_dssp             SECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEE------------EEEEE-EESSSCEEEEEECTTSSEEEE
T ss_pred             CCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeE------------Eeeee-ccCCCCcEEEEEecCCCEEEE
Confidence            35668899998 66666654    679999998763  321            01111 112445667999999997777


Q ss_pred             e--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCc---eEe--c------ccCCceeeEEEEecCCCCEEEEec-cCce
Q 021484          106 Y--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ---VYS--G------HRNSQTVKGVNFFGPNDEYVMSGS-DCGH  171 (312)
Q Consensus       106 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~------~~~~~~v~~v~~~s~~~~~l~~~~-~dg~  171 (312)
                      +  .+|.|.++++....               .+..   .+.  +      ........++.| +|+++++++.. ....
T Consensus       104 any~~g~v~v~~l~~~g---------------~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~-~pdg~~v~v~dlG~D~  167 (345)
T PF10282_consen  104 ANYGGGSVSVFPLDDDG---------------SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF-SPDGRFVYVPDLGADR  167 (345)
T ss_dssp             EETTTTEEEEEEECTTS---------------EEEEEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTE
T ss_pred             EEccCCeEEEEEccCCc---------------ccceeeeecccCCCCCcccccccccceeEEE-CCCCCEEEEEecCCCE
Confidence            5  49999999997631               1111   111  0      011123678888 99999887754 3457


Q ss_pred             EEEEeccCCe--e--EEEee-cCccceEEEEEcCCCCeEEEEe-CCCcEEEccCC--CCCC------CCCCCC-h-hhhh
Q 021484          172 LFIWKKKGGK--L--VRLMV-GDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPM--PTDF------PPLPDN-A-EKIM  235 (312)
Q Consensus       172 v~iwd~~~~~--~--~~~~~-~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~--~~~~------~~~~~~-~-~~~~  235 (312)
                      |.+|++....  .  ...+. ........++|+|+++++...+ .+++|.++++.  .+.+      ..++.. . ....
T Consensus       168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  247 (345)
T PF10282_consen  168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP  247 (345)
T ss_dssp             EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred             EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence            9999987654  2  22222 2234678999999999865554 67889999887  3221      112110 0 0012


Q ss_pred             hhhccCCCCceeE-EecCCceEEEEEec
Q 021484          236 KANKQGREDHSRI-TLTPDVIMHVLRLQ  262 (312)
Q Consensus       236 ~~~~~~~~~~~l~-s~~~d~~i~i~~~~  262 (312)
                      .....++++++|. +-.....|.++++.
T Consensus       248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  248 AEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             eeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            2234567777655 45566889999984

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=3.9e-09  Score=83.63  Aligned_cols=144  Identities=15%  Similarity=0.185  Sum_probs=109.3

Q ss_pred             eEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-
Q 021484          102 LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-  180 (312)
Q Consensus       102 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-  180 (312)
                      .+++|.+..+-+-|+.++                 ..+.|. ....  |.++.| ...+++++.|+..|.|..+|++.. 
T Consensus       227 hfs~G~sqqv~L~nvetg-----------------~~qsf~-sksD--VfAlQf-~~s~nLv~~GcRngeI~~iDLR~rn  285 (425)
T KOG2695|consen  227 HFSVGLSQQVLLTNVETG-----------------HQQSFQ-SKSD--VFALQF-AGSDNLVFNGCRNGEIFVIDLRCRN  285 (425)
T ss_pred             eecccccceeEEEEeecc-----------------cccccc-cchh--HHHHHh-cccCCeeEecccCCcEEEEEeeecc
Confidence            344466888888898886                 445555 3333  888998 778999999999999999999864 


Q ss_pred             ----eeEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCC----CCCCCCChhhhhhh-hccCCCCceeEEe
Q 021484          181 ----KLVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKA-NKQGREDHSRITL  250 (312)
Q Consensus       181 ----~~~~~~~~~~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~l~s~  250 (312)
                          .+...+. |...|+++..-. ++++|++.+.+|+|++||++.-+    +....+|.+..... .-...+...++++
T Consensus       286 qG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~  364 (425)
T KOG2695|consen  286 QGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV  364 (425)
T ss_pred             cCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEc
Confidence                3444444 888999988777 77889999999999999988543    45566776544222 2244567889999


Q ss_pred             cCCceEEEEEecccCcc
Q 021484          251 TPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       251 ~~d~~i~i~~~~~~~~~  267 (312)
                      +.|...|||.++.++.+
T Consensus       365 GdDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  365 GDDCYTRIWSLDSGHLL  381 (425)
T ss_pred             cCeeEEEEEecccCcee
Confidence            99999999999977655

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.91  E-value=2.8e-07  Score=87.78  Aligned_cols=187  Identities=10%  Similarity=0.014  Sum_probs=112.2

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-cCCc
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDEL  110 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~  110 (312)
                      ...++|+|++..++++.+.++.|++||..++............ ...........-.....++++|++. ++++. .++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~-~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER-NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc-cCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            3579999955477788888999999999876532110000000 0000000001123456899999998 44443 5899


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc------CCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR------NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                      |++||+.++.....   ...+.........+-...      .......+++ +++|+.+++-..++.|++||..++....
T Consensus       764 Irv~D~~tg~~~~~---~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav-d~dG~LYVADs~N~rIrviD~~tg~v~t  839 (1057)
T PLN02919        764 IRALDLKTGGSRLL---AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC-AKDGQIYVADSYNHKIKKLDPATKRVTT  839 (1057)
T ss_pred             EEEEECCCCcEEEE---EecccccCcccccccCCCCchhhhhccCCceeeE-eCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence            99999876520000   000000000000000000      0011457888 8999988999999999999998776543


Q ss_pred             Eee-------------cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          185 LMV-------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       185 ~~~-------------~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      ...             +.-.....++++++|+.+++.+.++.|++||+.++..
T Consensus       840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            321             1112467899999999988888999999999988653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=1.7e-07  Score=80.47  Aligned_cols=157  Identities=8%  Similarity=0.000  Sum_probs=92.8

Q ss_pred             cceEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-  107 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-  107 (312)
                      +......|+|++..++++.+.+  ..|.++++.+++..               .+ ..+........|+|+|+.|+-.+ 
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~---------------~L-T~~~~~d~~p~~SPDG~~I~F~Sd  296 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT---------------QI-TNYPGIDVNGNFVEDDKRIVFVSD  296 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE---------------Ec-ccCCCccCccEECCCCCEEEEEEC
Confidence            3456678999996565555544  45777787766521               11 11122233457999998555432 


Q ss_pred             -CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC---------ceEEEE
Q 021484          108 -DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---------GHLFIW  175 (312)
Q Consensus       108 -d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---------g~v~iw  175 (312)
                       .+  .|++.|+.++                +..+... ...    ....| +|+|++|+.....         ..|.+.
T Consensus       297 r~g~~~Iy~~dl~~g----------------~~~rlt~-~g~----~~~~~-SPDG~~Ia~~~~~~~~~~~~~~~~I~v~  354 (419)
T PRK04043        297 RLGYPNIFMKKLNSG----------------SVEQVVF-HGK----NNSSV-STYKNYIVYSSRETNNEFGKNTFNLYLI  354 (419)
T ss_pred             CCCCceEEEEECCCC----------------CeEeCcc-CCC----cCceE-CCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence             22  6888888775                2222211 111    11367 9999988766543         368888


Q ss_pred             eccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC-C--cEEEccCCCCCCCCC
Q 021484          176 KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-K--TVKLWAPMPTDFPPL  227 (312)
Q Consensus       176 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d-~--~i~iwd~~~~~~~~~  227 (312)
                      |+.+++. ..+... .......|+|+|+.++....+ +  .+.+.++.......+
T Consensus       355 d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l  407 (419)
T PRK04043        355 STNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF  407 (419)
T ss_pred             ECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence            9887764 344332 233458899999986655532 2  366677766543333

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.87  E-value=1e-07  Score=74.75  Aligned_cols=184  Identities=16%  Similarity=0.183  Sum_probs=117.9

Q ss_pred             cceEEEEEcC-CCCcEEEEEeCCCeEEEEEccCCeecCCCC----------CCCCccc-----------------cccc-
Q 021484           31 IRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPIS----------SDTPVDT-----------------FCPR-   81 (312)
Q Consensus        31 ~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~-----------------~~~~-   81 (312)
                      ..|..+.|.. .+..-++..+.|.+|++|.+....+....+          -..|+.+                 ..+. 
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r  165 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR  165 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence            4578888865 344567778899999999998663321110          0111111                 1111 


Q ss_pred             ccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC---ceeeEEEEecC
Q 021484           82 HLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS---QTVKGVNFFGP  158 (312)
Q Consensus        82 ~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~~s~  158 (312)
                      .....|...|.++.|+.+.+.++++.|-.|.+|++.-..+    .+.+         ..++.|.-.   ..|++..|++.
T Consensus       166 vyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~----sFnI---------VDiKP~nmeeLteVItSaeFhp~  232 (460)
T COG5170         166 VYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDG----SFNI---------VDIKPHNMEELTEVITSAEFHPE  232 (460)
T ss_pred             eccccceeEeeeeeecCchheeeeccceeeeeccccccCC----ceEE---------EeccCccHHHHHHHHhhcccCHh
Confidence            1225688889999999999999999999999999875421    1111         111122110   22778888333


Q ss_pred             CCCEEEEeccCceEEEEeccCCeeE------EE----------eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          159 NDEYVMSGSDCGHLFIWKKKGGKLV------RL----------MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       159 ~~~~l~~~~~dg~v~iwd~~~~~~~------~~----------~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                      ....+.-.+..|.|++-|++.....      ..          +.+-...|.++.|+|+|+++++-+. -+|++||.+..
T Consensus       233 ~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~  311 (460)
T COG5170         233 MCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA  311 (460)
T ss_pred             HcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence            4566777888999999999843221      11          1112347889999999999988764 68999998765


Q ss_pred             C--CCCCC
Q 021484          223 D--FPPLP  228 (312)
Q Consensus       223 ~--~~~~~  228 (312)
                      +  +.+++
T Consensus       312 k~pikTi~  319 (460)
T COG5170         312 KNPIKTIP  319 (460)
T ss_pred             cCCceeec
Confidence            4  45544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=7.4e-08  Score=83.59  Aligned_cols=226  Identities=12%  Similarity=0.142  Sum_probs=128.2

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-  105 (312)
                      -||+..|.-+.|+.+. +.|.+...+|-|.+|-+-.+.+.             ...+-......|.++.|+.+|..++. 
T Consensus        68 eGH~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW~-------------EEMiNnRnKSvV~SmsWn~dG~kIcIv  133 (1189)
T KOG2041|consen   68 EGHNASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSWC-------------EEMINNRNKSVVVSMSWNLDGTKICIV  133 (1189)
T ss_pred             ccCcceEEEEEecccc-ccccccCCCceEEEEeeecccHH-------------HHHhhCcCccEEEEEEEcCCCcEEEEE
Confidence            4899999999999988 78999999999999999988753             22232455677999999999986665 


Q ss_pred             ecCCcEEEEEcCCCc-------CC--------CCCcCCcccccCCC---------CCceEeccc-CC---------ceee
Q 021484          106 YNDELVYLFEKNMGL-------GP--------SPLSLSPEDLQKRE---------EPQVYSGHR-NS---------QTVK  151 (312)
Q Consensus       106 ~~d~~i~iwd~~~~~-------~~--------~~~~~~~~~~~~~~---------~~~~~~~~~-~~---------~~v~  151 (312)
                      ..||.|.+=.+..+.       +.        .+...-......++         ....+.... ..         ..+.
T Consensus       134 YeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia  213 (1189)
T KOG2041|consen  134 YEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIA  213 (1189)
T ss_pred             EccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccc
Confidence            579988766555431       00        00000000000000         000000000 00         0011


Q ss_pred             EEEEe-------cCCCCEEEEeccCceEEEEecc-CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---------cE
Q 021484          152 GVNFF-------GPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---------TV  214 (312)
Q Consensus       152 ~v~~~-------s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~---------~i  214 (312)
                      .+.|+       .|+...|+.+-..|.+.+-.-. ..+++ .+. ..-.+..+.|+++|..||.++.+.         .|
T Consensus       214 ~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv-v~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v  291 (1189)
T KOG2041|consen  214 EIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV-VVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKV  291 (1189)
T ss_pred             ceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe-EEe-cccEeecceecCCCcEEEEccCcccccCccccceE
Confidence            22221       2344455555555555544322 12222 111 124577889999999999998542         57


Q ss_pred             EEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcccee
Q 021484          215 KLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  270 (312)
Q Consensus       215 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~  270 (312)
                      .+|.+-+....++......+....| .. ..+.++...|+.+.+-+++..-+.-|.
T Consensus       292 ~Fysp~G~i~gtlkvpg~~It~lsW-Eg-~gLriA~AvdsfiyfanIRP~ykWgy~  345 (1189)
T KOG2041|consen  292 HFYSPYGHIVGTLKVPGSCITGLSW-EG-TGLRIAIAVDSFIYFANIRPEYKWGYI  345 (1189)
T ss_pred             EEeccchhheEEEecCCceeeeeEE-cC-CceEEEEEecceEEEEeecccceEEEe
Confidence            7777666555555434444433333 22 345667777888888777765444443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.87  E-value=5.3e-09  Score=98.66  Aligned_cols=151  Identities=15%  Similarity=0.262  Sum_probs=116.3

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e-c-
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-N-  107 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~-  107 (312)
                      .+|+.+.|+.+| +.+..+..||.+.+|.....                +..-...|........|-.  ..+++ + + 
T Consensus      2252 s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~pk----------------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~ 2312 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQG-NKFGIVDGDGDLSLWQASPK----------------PYTSWQCHNKALSDFRFIG--SLLATAGRSS 2312 (2439)
T ss_pred             chhhhhhhcccC-CceeeeccCCceeecccCCc----------------ceeccccCCccccceeeee--hhhhccccCC
Confidence            678999999999 89999999999999998732                2222267888888888876  44554 3 2 


Q ss_pred             -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                       ++.+.+||..-..               ..-..-..|...  +++++| -|..+.|++|+.+|.|++||++..+..+.+
T Consensus      2313 d~~n~~lwDtl~~~---------------~~s~v~~~H~~g--aT~l~~-~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPP---------------MNSLVHTCHDGG--ATVLAY-APKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred             CCCcccchhcccCc---------------ccceeeeecCCC--ceEEEE-cCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence             7789999975431               122223678776  999999 899999999999999999999988777666


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCC
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP  228 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~  228 (312)
                      +.         ++ ...++++++..|.|+||++.... +.+++
T Consensus      2375 ~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2375 QA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             hh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            53         44 66789999999999999988654 34444

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.83  E-value=1.4e-06  Score=67.84  Aligned_cols=168  Identities=15%  Similarity=0.214  Sum_probs=105.2

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-------CeEEE
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-------ELLIS  105 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~s  105 (312)
                      =.-++|||++ .+||.+...|+|++||+....+..... .   ..     ....-...|..+.|-+..       ++|+.
T Consensus        46 WRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~I~p-~---~~-----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi  115 (282)
T PF15492_consen   46 WRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFVIPP-A---MS-----FPGDLSDAIAGLIFLEYKKSAQWSYELLVI  115 (282)
T ss_pred             heEEEECCCC-cEEEEEcCCCeEEEEecccceeEEcCc-c---cc-----cCCccccceeeeEeeccccccccceeEEEE
Confidence            3579999999 899999999999999998655432211 0   00     112224567777665432       35566


Q ss_pred             ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec---ccCCceeeEEEEecCCCCEEEEeccCc-----------e
Q 021484          106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG---HRNSQTVKGVNFFGPNDEYVMSGSDCG-----------H  171 (312)
Q Consensus       106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~s~~~~~l~~~~~dg-----------~  171 (312)
                      .-.|.++-|-+..+.           .+..+....+..   +...  |.++.| +|..++|+.|+...           -
T Consensus       116 ~Y~G~L~Sy~vs~gt-----------~q~y~e~hsfsf~~~yp~G--i~~~vy-~p~h~LLlVgG~~~~~~~~s~a~~~G  181 (282)
T PF15492_consen  116 NYRGQLRSYLVSVGT-----------NQGYQENHSFSFSSHYPHG--INSAVY-HPKHRLLLVGGCEQNQDGMSKASSCG  181 (282)
T ss_pred             eccceeeeEEEEccc-----------CCcceeeEEEEecccCCCc--eeEEEE-cCCCCEEEEeccCCCCCccccccccC
Confidence            667777766653210           001122233332   2334  999999 89888888776411           2


Q ss_pred             EEEEeccCCeeE-----------------------EE---e---ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          172 LFIWKKKGGKLV-----------------------RL---M---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       172 v~iwd~~~~~~~-----------------------~~---~---~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                      +..|.+-++.+.                       ..   +   ......|..|..||+|..||+...+|.|.+|++.+-
T Consensus       182 LtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  182 LTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             ceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            556653322110                       00   0   112457889999999999999999999999998775


Q ss_pred             CC
Q 021484          223 DF  224 (312)
Q Consensus       223 ~~  224 (312)
                      .+
T Consensus       262 ~~  263 (282)
T PF15492_consen  262 RL  263 (282)
T ss_pred             hh
Confidence            53

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.82  E-value=1.9e-06  Score=72.53  Aligned_cols=167  Identities=13%  Similarity=0.147  Sum_probs=102.4

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec-C
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-D  108 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d  108 (312)
                      ....++.|+|++..++++--....|.+|++.....        .+..  ...+..........++|+|+++++.. .. +
T Consensus       144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~--------~l~~--~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s  213 (345)
T PF10282_consen  144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTG--------KLTP--VDSIKVPPGSGPRHLAFSPDGKYAYVVNELS  213 (345)
T ss_dssp             TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS---------TEEE--EEEEECSTTSSEEEEEE-TTSSEEEEEETTT
T ss_pred             ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCc--------eEEE--eeccccccCCCCcEEEEcCCcCEEEEecCCC
Confidence            45788999999944444444556899999976541        0100  11111233456789999999986655 44 8


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc----cCCceeeEEEEecCCCCEEEEec-cCceEEEEecc--CCe
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH----RNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKK--GGK  181 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~--~~~  181 (312)
                      +.|.++++....+            ..+..+.....    ........+++ +|++++|+++. ....|.+|++.  +++
T Consensus       214 ~~v~v~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~i~i-spdg~~lyvsnr~~~sI~vf~~d~~~g~  280 (345)
T PF10282_consen  214 NTVSVFDYDPSDG------------SLTEIQTISTLPEGFTGENAPAEIAI-SPDGRFLYVSNRGSNSISVFDLDPATGT  280 (345)
T ss_dssp             TEEEEEEEETTTT------------EEEEEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred             CcEEEEeecccCC------------ceeEEEEeeeccccccccCCceeEEE-ecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence            9999999873210            00111222111    11113678888 99999987765 46789999984  333


Q ss_pred             --eEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCC
Q 021484          182 --LVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPM  220 (312)
Q Consensus       182 --~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~  220 (312)
                        .+..+.........++++|+|++|++++ .++.|.+|++.
T Consensus       281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence              3344444344578999999999988776 66789999764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.81  E-value=7.7e-07  Score=83.38  Aligned_cols=207  Identities=10%  Similarity=0.092  Sum_probs=123.7

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCC-------CCCc-----------------------cccc
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-------DTPV-----------------------DTFC   79 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~-----------------------~~~~   79 (312)
                      ..+|.+++|||++ .+|+..+.++++.+... +.+++.+...       ..++                       +...
T Consensus       120 d~GI~a~~WSPD~-Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  120 DSGILAASWSPDE-ELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             cCcEEEEEECCCc-CEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            4589999999999 79999888899887653 2322211100       0000                       0000


Q ss_pred             c----cccccCCCccEEEEEEccCCCeEEEec----C---CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCc
Q 021484           80 P----RHLIGKNNIHITGLAYSNTSELLISYN----D---ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ  148 (312)
Q Consensus        80 ~----~~~~~~~~~~i~~~~~~~~~~~l~s~~----d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (312)
                      .    ...+. ....-..|+|-.||+++|.+.    .   ..++||+.+.                 .+..+...-.  +
T Consensus       198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-----------------~L~stSE~v~--g  257 (928)
T PF04762_consen  198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-----------------ELQSTSEPVD--G  257 (928)
T ss_pred             CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-----------------eEEeccccCC--C
Confidence            0    00111 334566899999999888742    3   3689998763                 2222222111  1


Q ss_pred             eeeEEEEecCCCCEEEEecc---CceEEEEeccCCeeEEEee----cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          149 TVKGVNFFGPNDEYVMSGSD---CGHLFIWKKKGGKLVRLMV----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       149 ~v~~v~~~s~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                      --..++| .|.|++||+...   ...|.+|.-+ |-.-..|.    .....|..+.|++++..||..-.|. |.+|....
T Consensus       258 Le~~l~W-rPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N  334 (928)
T PF04762_consen  258 LEGALSW-RPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN  334 (928)
T ss_pred             ccCCccC-CCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence            1457888 999999998764   4567777643 43333332    3456899999999999999977555 99998877


Q ss_pred             CCC---CCCCCChhhhhhhhccCCC-CceeEEecCCceEEEEEe
Q 021484          222 TDF---PPLPDNAEKIMKANKQGRE-DHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       222 ~~~---~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~i~~~  261 (312)
                      ...   ..+.-..........|+++ ...|..++.++.+..+++
T Consensus       335 YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  335 YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            652   1111111111222556764 455666666666655543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.81  E-value=8.8e-06  Score=65.47  Aligned_cols=212  Identities=8%  Similarity=0.142  Sum_probs=124.1

Q ss_pred             eEEEEEcCCCCcEEEEEe-CCCeEEEEEccC-CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec--C
Q 021484           33 LNAIVIDPRNPNYFAVGG-SDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--D  108 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--d  108 (312)
                      -+-+++++++ ++++++. .-|.|.++-++. +.+....+....... .+ +. .-....+....+.|++++|++..  -
T Consensus        91 p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~-~p-~~-rQ~~~h~H~a~~tP~~~~l~v~DLG~  166 (346)
T COG2706          91 PCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS-GP-HE-RQESPHVHSANFTPDGRYLVVPDLGT  166 (346)
T ss_pred             CeEEEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeeecCCC-CC-Cc-cccCCccceeeeCCCCCEEEEeecCC
Confidence            3778999998 5666664 568999999965 432211110000000 00 00 00122377889999999888863  6


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEeccCC-eeEEEe
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGG-KLVRLM  186 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~~-~~~~~~  186 (312)
                      ..|.+|++..+..           ..... ..+ .....  .+.+.| +|++++..+.++ +++|.+|..+.. ..+..+
T Consensus       167 Dri~~y~~~dg~L-----------~~~~~-~~v-~~G~G--PRHi~F-Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l  230 (346)
T COG2706         167 DRIFLYDLDDGKL-----------TPADP-AEV-KPGAG--PRHIVF-HPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL  230 (346)
T ss_pred             ceEEEEEcccCcc-----------ccccc-ccc-CCCCC--cceEEE-cCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence            7899999986510           00011 111 12222  689999 999999876665 899999998763 223333


Q ss_pred             ec---------CccceEEEEEcCCCCeEEEEe-CCCcEEEccCCC--CCCCC--CCCChhhhhhhhccCCCCceeEEecC
Q 021484          187 VG---------DRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMP--TDFPP--LPDNAEKIMKANKQGREDHSRITLTP  252 (312)
Q Consensus       187 ~~---------~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~  252 (312)
                      +.         .......+..+|+|++|.++. ....|-+|.+..  +++..  ...........-.+.+.+++|++...
T Consensus       231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             eeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence            22         123567889999999988876 344777776543  33211  11111111122224556777777665


Q ss_pred             C-ceEEEEEeccc
Q 021484          253 D-VIMHVLRLQRR  264 (312)
Q Consensus       253 d-~~i~i~~~~~~  264 (312)
                      + ..+.++.+...
T Consensus       311 ~sd~i~vf~~d~~  323 (346)
T COG2706         311 KSDNITVFERDKE  323 (346)
T ss_pred             CCCcEEEEEEcCC
Confidence            5 57888876544

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.81  E-value=1.3e-08  Score=80.75  Aligned_cols=134  Identities=15%  Similarity=0.106  Sum_probs=97.2

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEe-c
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-N  107 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~  107 (312)
                      +..|.++.|...+ +++..|..+|.|..+|++.+..-..          ...+. -.|...|+++..-. ++++|.++ .
T Consensus       252 ksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~----------~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M  319 (425)
T KOG2695|consen  252 KSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNG----------WCAQR-LYHDSSVTSLQILQFSQQKLMASDM  319 (425)
T ss_pred             chhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCC----------cceEE-EEcCcchhhhhhhccccceEeeccC
Confidence            5578888898877 7999999999999999997631100          11111 34778888887665 55666655 6


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  187 (312)
                      +|+|.+||++.-+             ..+-++.+.||.+...-.-+-. .+....+++++.|.-.+||.++.++.+.+++
T Consensus       320 ~gkikLyD~R~~K-------------~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  320 TGKIKLYDLRATK-------------CKKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             cCceeEeeehhhh-------------cccceeeeeccccccccccccc-ccccceEEEccCeeEEEEEecccCceeeccC
Confidence            9999999998651             1123788999976533222333 6677888999999999999999999998886


Q ss_pred             cC
Q 021484          188 GD  189 (312)
Q Consensus       188 ~~  189 (312)
                      -.
T Consensus       386 f~  387 (425)
T KOG2695|consen  386 FP  387 (425)
T ss_pred             CC
Confidence            43

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.80  E-value=1.9e-06  Score=71.46  Aligned_cols=206  Identities=13%  Similarity=0.091  Sum_probs=123.1

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEe-C-CCeEEEEEccCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-S-DEYARVYDIRKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~   78 (312)
                      |.+||+.+.+...-+.+...+.  -+  .......++++|+| +.+++.. . +..|.+.|+.+++.+.++..+.+...+
T Consensus        79 V~v~D~~t~~~~~~i~~p~~p~--~~--~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy  153 (352)
T TIGR02658        79 VEVIDPQTHLPIADIELPEGPR--FL--VGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF  153 (352)
T ss_pred             EEEEECccCcEEeEEccCCCch--hh--ccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE
Confidence            5688888877655555432210  00  01223478999999 6666554 4 799999999999887765543322221


Q ss_pred             ccc------ccccC----------CCccEEEE--------------EEcc-CCCeEEEecCCcEEEEEcCCCcCCCCCcC
Q 021484           79 CPR------HLIGK----------NNIHITGL--------------AYSN-TSELLISYNDELVYLFEKNMGLGPSPLSL  127 (312)
Q Consensus        79 ~~~------~~~~~----------~~~~i~~~--------------~~~~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~  127 (312)
                      ...      ....+          ........              .|.+ +|+++..+..|.|++.|+......   ..
T Consensus       154 ~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~---~~  230 (352)
T TIGR02658       154 PTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK---FL  230 (352)
T ss_pred             EecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcce---ec
Confidence            100      00000          00001111              2334 777666665599999997543100   00


Q ss_pred             CcccccCCCCCceEecc-----cCCceeeEEEEecCCCCEEEEec----------cCceEEEEeccCCeeEEEeecCccc
Q 021484          128 SPEDLQKREEPQVYSGH-----RNSQTVKGVNFFGPNDEYVMSGS----------DCGHLFIWKKKGGKLVRLMVGDRHV  192 (312)
Q Consensus       128 ~~~~~~~~~~~~~~~~~-----~~~~~v~~v~~~s~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~  192 (312)
                              +....+...     -.+....-+++ +++++.+++..          ..+.|.++|..+++.+..+.. ...
T Consensus       231 --------~~~~~~~~~~~~~~wrP~g~q~ia~-~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~  300 (352)
T TIGR02658       231 --------PAIEAFTEAEKADGWRPGGWQQVAY-HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHE  300 (352)
T ss_pred             --------ceeeeccccccccccCCCcceeEEE-cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCc
Confidence                    111111100     00111344888 89998888743          225799999999999988874 347


Q ss_pred             eEEEEEcCCCC-eEEEEe-CCCcEEEccCCCCCC
Q 021484          193 VNQLEPHPHIP-MFATCG-IEKTVKLWAPMPTDF  224 (312)
Q Consensus       193 v~~~~~~p~~~-~l~t~~-~d~~i~iwd~~~~~~  224 (312)
                      +..++++|+++ .|++.+ .++.|.+.|..+++.
T Consensus       301 ~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       301 IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence            88999999999 766555 688999999988864

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=2.9e-06  Score=71.79  Aligned_cols=112  Identities=10%  Similarity=0.071  Sum_probs=74.1

Q ss_pred             eeEEEEecCCCCEEEEecc---CceEEEEeccC-C---eeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEccC
Q 021484          150 VKGVNFFGPNDEYVMSGSD---CGHLFIWKKKG-G---KLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAP  219 (312)
Q Consensus       150 v~~v~~~s~~~~~l~~~~~---dg~v~iwd~~~-~---~~~~~~~~~~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~  219 (312)
                      |...+| .|.|..+++-+.   ..++.+|.+.+ .   +.+..+.  ....+.+.|+|.|++++.+.   ..|.+.++|.
T Consensus       448 vi~FaW-EP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~  524 (698)
T KOG2314|consen  448 VIAFAW-EPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDT  524 (698)
T ss_pred             eeeeee-ccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEec
Confidence            677788 888887765443   45678887763 2   2233332  34568899999999977664   5789999998


Q ss_pred             CCCCCCCCCCChhhhhhhhccCCCCceeEEecCC------ceEEEEEeccc
Q 021484          220 MPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD------VIMHVLRLQRR  264 (312)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~i~~~~~~  264 (312)
                      .-..................|.|.++++++++.-      .-.++|+++..
T Consensus       525 ~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  525 DYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             chhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence            7533322222222334556789999999998764      45678887643

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.74  E-value=1.5e-06  Score=67.09  Aligned_cols=147  Identities=10%  Similarity=-0.050  Sum_probs=101.0

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCc--cEEEEEEccCCCeEEE-ecCCcEEEEEcCCCc
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI--HITGLAYSNTSELLIS-YNDELVYLFEKNMGL  120 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~  120 (312)
                      ..+..++.|.++++.++..+...              .   ..|..  .+.+++++++++++++ +....|..|.+....
T Consensus       129 ~~~~i~sndht~k~~~~~~~s~~--------------~---~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s  191 (344)
T KOG4532|consen  129 FPLNIASNDHTGKTMVVSGDSNK--------------F---AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES  191 (344)
T ss_pred             cceeeccCCcceeEEEEecCccc--------------c---eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc
Confidence            35667788899999888754310              0   11222  3778999999998888 567889999886541


Q ss_pred             CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE-----EEeecCccceEE
Q 021484          121 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV-----RLMVGDRHVVNQ  195 (312)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~~v~~  195 (312)
                                    ....++...... ..-.+.+| +.....+|++..||.+.|||++.....     .+-..|.+.+..
T Consensus       192 --------------ey~~~~~~a~t~-D~gF~~S~-s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~  255 (344)
T KOG4532|consen  192 --------------EYIENIYEAPTS-DHGFYNSF-SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRV  255 (344)
T ss_pred             --------------ceeeeeEecccC-CCceeeee-ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEE
Confidence                          022232222221 12467778 888899999999999999998864332     223468899999


Q ss_pred             EEEcCCCCe--EEEEeCCCcEEEccCCCCC
Q 021484          196 LEPHPHIPM--FATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       196 ~~~~p~~~~--l~t~~~d~~i~iwd~~~~~  223 (312)
                      +.|+|-|..  |+..-.-+.+.+-|+++..
T Consensus       256 c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  256 CRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             EEecCCCcceEEEEecCcceEEEEEcccCc
Confidence            999997765  3333345788999998865

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.74  E-value=1.6e-06  Score=72.12  Aligned_cols=145  Identities=12%  Similarity=0.102  Sum_probs=108.0

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCC-eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDE-YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      -+|+.+|.-..+..++ +-++.|..|| .+-|||.+++++.               .+ ...-+.|.++..+++|++++.
T Consensus       356 v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~k---------------r~-e~~lg~I~av~vs~dGK~~vv  418 (668)
T COG4946         356 VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVK---------------RI-EKDLGNIEAVKVSPDGKKVVV  418 (668)
T ss_pred             cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEE---------------Ee-eCCccceEEEEEcCCCcEEEE
Confidence            4688888888888877 6889999999 8999999988632               11 344578999999999998888


Q ss_pred             ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc----eEEEEeccCC
Q 021484          106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG----HLFIWKKKGG  180 (312)
Q Consensus       106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg----~v~iwd~~~~  180 (312)
                      +. ...+.+.|+.++                .....-+...  .-|+...| +|+++++|-+--+|    .|+++|+..+
T Consensus       419 aNdr~el~vididng----------------nv~~idkS~~--~lItdf~~-~~nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         419 ANDRFELWVIDIDNG----------------NVRLIDKSEY--GLITDFDW-HPNSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             EcCceEEEEEEecCC----------------CeeEeccccc--ceeEEEEE-cCCceeEEEecCcceeeeeEEEEecCCC
Confidence            75 778999999987                3322222223  34999999 99999999876655    6999999987


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeEEEE
Q 021484          181 KLVRLMVGDRHVVNQLEPHPHIPMFATC  208 (312)
Q Consensus       181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~  208 (312)
                      +....- ...+.=.+-+|.|++++|.--
T Consensus       480 Kiy~vT-T~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         480 KIYDVT-TPTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             eEEEec-CCcccccCcccCCCCcEEEEE
Confidence            765432 233333567899999985544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=7.7e-07  Score=72.29  Aligned_cols=92  Identities=8%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             eeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEE
Q 021484           13 RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT   92 (312)
Q Consensus        13 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   92 (312)
                      ..+...+++.....|+|...|.+++|+|...-++..++.+.+|+|.|+++..++              ... ..+ ..++
T Consensus       176 ~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v--------------ssy-~a~-~~~w  239 (463)
T KOG1645|consen  176 QKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV--------------SSY-IAY-NQIW  239 (463)
T ss_pred             EEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee--------------ehe-ecc-CCce
Confidence            334444555444447889999999999987448889999999999999987632              222 333 6799


Q ss_pred             EEEEccCCC-eEEEe-cCCcEEEEEcCCCc
Q 021484           93 GLAYSNTSE-LLISY-NDELVYLFEKNMGL  120 (312)
Q Consensus        93 ~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~  120 (312)
                      +++|..+.. ++.+| ..|.|.+||++...
T Consensus       240 SC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  240 SCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            999999886 66666 59999999998764

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.65  E-value=2.3e-07  Score=80.88  Aligned_cols=204  Identities=12%  Similarity=0.156  Sum_probs=134.4

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC---eEEEe
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE---LLISY  106 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~s~  106 (312)
                      ..++.++..+|.| +-++.++.-| +.+-|+...-        .     .+..+..-..-.+....|+|...   .+++.
T Consensus        24 ~~~~~a~si~p~g-rdi~lAsr~g-l~i~dld~p~--------~-----ppr~l~h~tpw~vad~qws~h~a~~~wiVst   88 (1081)
T KOG0309|consen   24 DGGFNAVSINPSG-RDIVLASRQG-LYIIDLDDPF--------T-----PPRWLHHITPWQVADVQWSPHPAKPYWIVST   88 (1081)
T ss_pred             cCcccceeecccc-chhhhhhhcC-eEEEeccCCC--------C-----CceeeeccCcchhcceecccCCCCceeEEec
Confidence            3468899999998 6777777655 4456765332        0     11111111234466788888763   55666


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-eEEE
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRL  185 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~  185 (312)
                      +...-.+|++....             ....-..+.+|...  ++.+.|.......+++++-|..+..||+++.. ++..
T Consensus        89 s~qkaiiwnlA~ss-------------~~aIef~lhghsra--itd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys  153 (1081)
T KOG0309|consen   89 SNQKAIIWNLAKSS-------------SNAIEFVLHGHSRA--ITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS  153 (1081)
T ss_pred             CcchhhhhhhhcCC-------------ccceEEEEecCccc--eeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence            77777889885431             00222344566644  99999954456789999999999999998754 4444


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      +..-......|+|+--...+.+.+..+.|++||++.+.  +..+.+|...+........-...+++.+.|++++.|+...
T Consensus       154 ~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  154 TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             eecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence            44333456789998877776666778899999998765  3555555555533332222345788999999999998654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.64  E-value=7.4e-05  Score=62.14  Aligned_cols=74  Identities=9%  Similarity=0.024  Sum_probs=50.5

Q ss_pred             EcCCCCcEEEEEe---------CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--
Q 021484           38 IDPRNPNYFAVGG---------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--  106 (312)
Q Consensus        38 ~~p~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--  106 (312)
                      ++|++..++++.+         .+..|.+||..+.+....+..+..-+..        .......++++|+|++|...  
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~--------~~~~~~~~~ls~dgk~l~V~n~  124 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL--------VGTYPWMTSLTPDNKTLLFYQF  124 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh--------ccCccceEEECCCCCEEEEecC
Confidence            9999955555556         6899999999999865443322110000        02233478999999977654  


Q ss_pred             c-CCcEEEEEcCCC
Q 021484          107 N-DELVYLFEKNMG  119 (312)
Q Consensus       107 ~-d~~i~iwd~~~~  119 (312)
                      . +..|.+.|+.++
T Consensus       125 ~p~~~V~VvD~~~~  138 (352)
T TIGR02658       125 SPSPAVGVVDLEGK  138 (352)
T ss_pred             CCCCEEEEEECCCC
Confidence            4 889999999887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.62  E-value=1.3e-05  Score=64.15  Aligned_cols=189  Identities=11%  Similarity=0.054  Sum_probs=116.6

Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEc-cCCCeEEEecCCcEEE
Q 021484           35 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYL  113 (312)
Q Consensus        35 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~d~~i~i  113 (312)
                      +++|.+..+.++.+-...+.|..|+..+++..              . . .  ......+++. +++.++++.. +.+.+
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~--------------~-~-~--~~~~~G~~~~~~~g~l~v~~~-~~~~~   64 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE--------------V-I-D--LPGPNGMAFDRPDGRLYVADS-GGIAV   64 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE--------------E-E-E--SSSEEEEEEECTTSEEEEEET-TCEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE--------------E-E-e--cCCCceEEEEccCCEEEEEEc-CceEE
Confidence            67899844378888888999999999887621              1 1 1  1126677887 6665555554 45566


Q ss_pred             EEcCCCcCCCCCcCCcccccCCCCCceEec--cc-CCceeeEEEEecCCCCEEEEeccC--------ceEEEEeccCCee
Q 021484          114 FEKNMGLGPSPLSLSPEDLQKREEPQVYSG--HR-NSQTVKGVNFFGPNDEYVMSGSDC--------GHLFIWKKKGGKL  182 (312)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~v~~~s~~~~~l~~~~~d--------g~v~iwd~~~~~~  182 (312)
                      +|..++                +.......  .. .......+++ +++|++.++....        |.|..++.. ++.
T Consensus        65 ~d~~~g----------------~~~~~~~~~~~~~~~~~~ND~~v-d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~  126 (246)
T PF08450_consen   65 VDPDTG----------------KVTVLADLPDGGVPFNRPNDVAV-DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV  126 (246)
T ss_dssp             EETTTT----------------EEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE
T ss_pred             EecCCC----------------cEEEEeeccCCCcccCCCceEEE-cCCCCEEEEecCCCccccccccceEEECCC-CeE
Confidence            688775                22222222  11 2234889998 9999977765543        668888877 554


Q ss_pred             EEEeecCccceEEEEEcCCCCeEE-EEeCCCcEEEccCCCCCC--------CCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484          183 VRLMVGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDF--------PPLPDNAEKIMKANKQGREDHSRITLTPD  253 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~~l~-t~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  253 (312)
                      ..... .-...+.++|+|+++.|. +-+..+.|..+++.....        ..+.... ....-.....++++.++.-..
T Consensus       127 ~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G~l~va~~~~  204 (246)
T PF08450_consen  127 TVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDGNLWVADWGG  204 (246)
T ss_dssp             EEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS-EEEEEETT
T ss_pred             EEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCCCEEEEEcCC
Confidence            43333 345678999999999765 556788899998853321        1111111 111222345577888887788


Q ss_pred             ceEEEEEec
Q 021484          254 VIMHVLRLQ  262 (312)
Q Consensus       254 ~~i~i~~~~  262 (312)
                      +.|.+++-+
T Consensus       205 ~~I~~~~p~  213 (246)
T PF08450_consen  205 GRIVVFDPD  213 (246)
T ss_dssp             TEEEEEETT
T ss_pred             CEEEEECCC
Confidence            888888754

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.59  E-value=1.3e-07  Score=51.96  Aligned_cols=38  Identities=24%  Similarity=0.688  Sum_probs=34.8

Q ss_pred             CCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEe
Q 021484          136 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK  176 (312)
Q Consensus       136 ~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd  176 (312)
                      +++..+.+|...  |.+++| +|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~--i~~i~~-~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSS--INSIAW-SPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSS--EEEEEE-ETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCc--EEEEEE-ecccccceeeCCCCEEEEEC
Confidence            466788999977  999999 89999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.57  E-value=3.6e-06  Score=66.33  Aligned_cols=229  Identities=15%  Similarity=0.217  Sum_probs=130.8

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccc----cc--cCCCccEEEEEEccCC--
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH----LI--GKNNIHITGLAYSNTS--  100 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~i~~~~~~~~~--  100 (312)
                      ....|+++.|...| .++++|...|.|.+|.-.... -.+..   -...|....    .+  ..-...|..+.|..++  
T Consensus        25 ead~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~-~ceyk---f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r   99 (460)
T COG5170          25 EADKITAVEFDETG-LYLATGDKGGRVVLFEREKSY-GCEYK---FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR   99 (460)
T ss_pred             ccceeeEEEecccc-ceEeecCCCceEEEeeccccc-ccchh---hhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence            35579999999998 899999999999999866433 00000   000010000    00  0114567888887665  


Q ss_pred             -CeEEEecCCcEEEEEcCCCc------------------CCCC--CcCCccc------ccCCCCCceE-ecccCCceeeE
Q 021484          101 -ELLISYNDELVYLFEKNMGL------------------GPSP--LSLSPED------LQKREEPQVY-SGHRNSQTVKG  152 (312)
Q Consensus       101 -~~l~s~~d~~i~iwd~~~~~------------------~~~~--~~~~~~~------~~~~~~~~~~-~~~~~~~~v~~  152 (312)
                       ++|+++.|.+|++|.+....                  ++..  .++....      +...++.+.+ ..|..  .+.+
T Consensus       100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y--hiNS  177 (460)
T COG5170         100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY--HINS  177 (460)
T ss_pred             ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee--Eeee
Confidence             38888899999999986541                  1100  0000000      0000111222 23332  3889


Q ss_pred             EEEecCCCCEEEEeccCceEEEEeccCCe---eEEEeecCc-----cceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCC
Q 021484          153 VNFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVRLMVGDR-----HVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       153 v~~~s~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~-----~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~  223 (312)
                      ++| +.+.+.++++ .|=.|.+|++.-..   .+..++.|.     .-|++..|+|... .+.-.+..|.|++-|++...
T Consensus       178 iS~-NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a  255 (460)
T COG5170         178 ISF-NSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA  255 (460)
T ss_pred             eee-cCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence            998 7777777665 57889999876322   233344443     4688999999754 46666778999999998432


Q ss_pred             C-----C----CCCCC----hhhh---hhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021484          224 F-----P----PLPDN----AEKI---MKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       224 ~-----~----~~~~~----~~~~---~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      +     .    ++.+.    -..+   +....++++++++++ ..=.++++||++....+
T Consensus       256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls-RdyltvkiwDvnm~k~p  314 (460)
T COG5170         256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS-RDYLTVKIWDVNMAKNP  314 (460)
T ss_pred             hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE-eccceEEEEecccccCC
Confidence            1     1    11110    0111   233334445555543 33468999998765443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=7.2e-07  Score=75.49  Aligned_cols=198  Identities=14%  Similarity=0.131  Sum_probs=123.2

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~  106 (312)
                      .|+.+|.++.|-.+. +.+++  -||.|.+||.--+++...+..       .++   .+..+.|.++. +-+..++++ +
T Consensus       782 aHkk~i~~igfL~~l-r~i~S--cD~giHlWDPFigr~Laq~~d-------apk---~~a~~~ikcl~-nv~~~iliAgc  847 (1034)
T KOG4190|consen  782 AHKKPIHDIGFLADL-RSIAS--CDGGIHLWDPFIGRLLAQMED-------APK---EGAGGNIKCLE-NVDRHILIAGC  847 (1034)
T ss_pred             hccCcccceeeeecc-ceeee--ccCcceeecccccchhHhhhc-------Ccc---cCCCceeEecc-cCcchheeeec
Confidence            389999999998876 55554  589999999877663221000       000   11223343332 112334444 4


Q ss_pred             c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc--cCC-ceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021484          107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--RNS-QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  182 (312)
Q Consensus       107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~  182 (312)
                      + ..+|+++|.+..                .-...++..  ..+ ..+.+++. .+.|++++++-..|.|.+.|.++|+.
T Consensus       848 saeSTVKl~DaRsc----------------e~~~E~kVcna~~Pna~~R~iaV-a~~GN~lAa~LSnGci~~LDaR~G~v  910 (1034)
T KOG4190|consen  848 SAESTVKLFDARSC----------------EWTCELKVCNAPGPNALTRAIAV-ADKGNKLAAALSNGCIAILDARNGKV  910 (1034)
T ss_pred             cchhhheeeecccc----------------cceeeEEeccCCCCchheeEEEe-ccCcchhhHHhcCCcEEEEecCCCce
Confidence            4 899999999876                222223221  111 23888988 89999999999999999999999999


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE-ccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL-WAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~i-wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      +..++.-......++ .|..+.++....|.++.+ |..-.+.. ........+.   .....-+..+++......+.++.
T Consensus       911 INswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepa---hflqsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  911 INSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA---HFLQSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             eccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch---hhhhccCceeEEeccCcEEEEEe
Confidence            887764433333333 466677888788889988 87555432 2111111111   11122345788888888888885

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.54  E-value=6.5e-07  Score=68.64  Aligned_cols=209  Identities=13%  Similarity=0.084  Sum_probs=118.0

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCc
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL  110 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~  110 (312)
                      .|+.+.++-+  ..|+++..++.+.......+.+...++-...+..+...   ..|.++-..-+.+--+.-++++ .||.
T Consensus        38 ~~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~---a~~sep~p~~~~s~~~t~V~~~~~dg~  112 (319)
T KOG4714|consen   38 KLSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVL---AKNSEIDPNDACTMTDNRVCIGYADGS  112 (319)
T ss_pred             EEEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeee---eccCCCCCcccccccCCceEecCCCce
Confidence            3667777764  57888888888877776666554333222222211111   1222222222223334456664 6999


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-----cCceEEEEeccCCeeEEE
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-----DCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-----~dg~v~iwd~~~~~~~~~  185 (312)
                      +.+++.+...               ............  -.+.++ -..++++.++.     .-+..+.|+++..+.+..
T Consensus       113 ~~v~s~~~~~---------------~~~~~i~~~~~~--~as~~~-~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~  174 (319)
T KOG4714|consen  113 LAVFSTDKDL---------------ALMSRIPSIHSG--SASRKI-CRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP  174 (319)
T ss_pred             EEEEechHHH---------------hhhhhccccccc--ccccce-eecccEEecCCcceEeeccceeeecccccccccc
Confidence            9999986531               111111111111  112222 12344444332     233455666654433222


Q ss_pred             eecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          186 MVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      -......|.+++-+|..+. ++.|+.||.+.+||.+...  ...+..|..++....+-..++..|++.+.||.+-.||-.
T Consensus       175 ~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  175 SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            1112235899999997665 7777899999999998764  233455777776666555588999999999999999855


Q ss_pred             c
Q 021484          263 R  263 (312)
Q Consensus       263 ~  263 (312)
                      .
T Consensus       255 ~  255 (319)
T KOG4714|consen  255 T  255 (319)
T ss_pred             C
Confidence            3

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.54  E-value=3.8e-05  Score=61.73  Aligned_cols=204  Identities=14%  Similarity=0.156  Sum_probs=128.0

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCe-EEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEY-ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-  107 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-  107 (312)
                      +.+...++.+|..+..++.+-.-|+ ..+||..+++.......+      .-.++ .+|      -.|+++|++|.+.. 
T Consensus         4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~------~gRHF-yGH------g~fs~dG~~LytTEn   70 (305)
T PF07433_consen    4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP------PGRHF-YGH------GVFSPDGRLLYTTEN   70 (305)
T ss_pred             CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC------CCCEE-ecC------EEEcCCCCEEEEecc
Confidence            3456788999976678888877665 677999988754322110      11111 344      37999999888762 


Q ss_pred             -----CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc--------------
Q 021484          108 -----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD--------------  168 (312)
Q Consensus       108 -----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~--------------  168 (312)
                           .|.|-|||.....               +.+..+..+.-.  ...+.+ .|+++.|+.+..              
T Consensus        71 d~~~g~G~IgVyd~~~~~---------------~ri~E~~s~GIG--PHel~l-~pDG~tLvVANGGI~Thpd~GR~kLN  132 (305)
T PF07433_consen   71 DYETGRGVIGVYDAARGY---------------RRIGEFPSHGIG--PHELLL-MPDGETLVVANGGIETHPDSGRAKLN  132 (305)
T ss_pred             ccCCCcEEEEEEECcCCc---------------EEEeEecCCCcC--hhhEEE-cCCCCEEEEEcCCCccCcccCceecC
Confidence                 4679999998321               566667766544  667777 899987777642              


Q ss_pred             ----CceEEEEeccCCeeEEEee----cCccceEEEEEcCCCCeEEEEeCCCc-------EEEccCCCCCCCCCCCChh-
Q 021484          169 ----CGHLFIWKKKGGKLVRLMV----GDRHVVNQLEPHPHIPMFATCGIEKT-------VKLWAPMPTDFPPLPDNAE-  232 (312)
Q Consensus       169 ----dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~l~t~~~d~~-------i~iwd~~~~~~~~~~~~~~-  232 (312)
                          +..+...|..+|+.+.+..    .|.-.|..+++.++|..++..-..|.       |-+++.... +..+..... 
T Consensus       133 l~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~  211 (305)
T PF07433_consen  133 LDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQ  211 (305)
T ss_pred             hhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHH
Confidence                3456677778888877643    36678999999999887766654432       444443321 111111111 


Q ss_pred             -----hhhhhhccCCCCc-eeEEecCCceEEEEEecccC
Q 021484          233 -----KIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       233 -----~~~~~~~~~~~~~-~l~s~~~d~~i~i~~~~~~~  265 (312)
                           .-+.......++. ..+|....+.+.+||..+..
T Consensus       212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR  250 (305)
T ss_pred             HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence                 1122233444554 44666677899999977663

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.52  E-value=1.6e-05  Score=74.83  Aligned_cols=211  Identities=11%  Similarity=0.083  Sum_probs=130.6

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEE----EccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVY----DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      ...|.++.|-++. ..++.+..+|.|.+.    +..+..+.            +.    ..-...|.+++||||+++|+.
T Consensus        75 ~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~~~~~E------------~V----G~vd~GI~a~~WSPD~Ella~  137 (928)
T PF04762_consen   75 NDKIVSFQYLADS-ESLCIALASGDIILVREDPDPDEDEIE------------IV----GSVDSGILAASWSPDEELLAL  137 (928)
T ss_pred             CCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCCCceeE------------EE----EEEcCcEEEEEECCCcCEEEE
Confidence            4679999999988 688888899999999    54444311            11    233678999999999997776


Q ss_pred             e-cCCcEEEEEcCC----Cc-----------------CCCCCcCCcccccCC-----CCC------ceEecccCCceeeE
Q 021484          106 Y-NDELVYLFEKNM----GL-----------------GPSPLSLSPEDLQKR-----EEP------QVYSGHRNSQTVKG  152 (312)
Q Consensus       106 ~-~d~~i~iwd~~~----~~-----------------~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~v~~  152 (312)
                      . .++++.+.+..=    ..                 +....+++...-+..     .+.      ..+. ....  -..
T Consensus       138 vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~--~~~  214 (928)
T PF04762_consen  138 VTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG--RVR  214 (928)
T ss_pred             EeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC--ceE
Confidence            4 577776654320    00                 111122222111110     000      0111 2222  568


Q ss_pred             EEEecCCCCEEEEecc------CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEccCCCCC
Q 021484          153 VNFFGPNDEYVMSGSD------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTD  223 (312)
Q Consensus       153 v~~~s~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~  223 (312)
                      ++| -.||+|+|+.+-      -..++||+.. |+...+-..-.+--..++|.|.|+++|+.-.   ...|.+|.-++.+
T Consensus       215 ISW-RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr  292 (928)
T PF04762_consen  215 ISW-RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR  292 (928)
T ss_pred             EEE-CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE
Confidence            899 899999998764      2579999976 6654443322233346899999999998863   3567888866654


Q ss_pred             CCC--CC-CChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          224 FPP--LP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       224 ~~~--~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      ...  ++ ......+....|..++..|+..-.|. +++|...+
T Consensus       293 hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N  334 (928)
T PF04762_consen  293 HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN  334 (928)
T ss_pred             eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence            322  22 12222335556888888887766555 99997654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.49  E-value=3.8e-05  Score=71.11  Aligned_cols=213  Identities=10%  Similarity=0.097  Sum_probs=125.5

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE  109 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~  109 (312)
                      ..|.++.|..+. +.++.+...|.|.+-|..+..+.            +.    ..-...|.+++|+|+++.++-. ..+
T Consensus        69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~e------------iv----g~vd~GI~aaswS~Dee~l~liT~~~  131 (1265)
T KOG1920|consen   69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELE------------IV----GNVDNGISAASWSPDEELLALITGRQ  131 (1265)
T ss_pred             cceEEEEEeccc-ceEEEEecCCcEEEEccccccee------------ee----eeccCceEEEeecCCCcEEEEEeCCc
Confidence            579999999887 78888888999999988876532            11    3336789999999999977775 455


Q ss_pred             cEEEEEc----CCCc-----------------CCCCCcCCcccc--cCCCCCceEe--c-ccCCceeeEEEEecCCCCEE
Q 021484          110 LVYLFEK----NMGL-----------------GPSPLSLSPEDL--QKREEPQVYS--G-HRNSQTVKGVNFFGPNDEYV  163 (312)
Q Consensus       110 ~i~iwd~----~~~~-----------------~~~~~~~~~~~~--~~~~~~~~~~--~-~~~~~~v~~v~~~s~~~~~l  163 (312)
                      ++.+-+-    -...                 +....++.....  ...+.....+  + ......-++++| --+|+++
T Consensus       132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW-RgDg~~f  210 (1265)
T KOG1920|consen  132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW-RGDGEYF  210 (1265)
T ss_pred             EEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE-ccCCcEE
Confidence            5554332    1100                 000001110000  0000000000  0 000011356888 8899999


Q ss_pred             EE-----eccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEccCCCCCCC----CCCCCh
Q 021484          164 MS-----GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTDFP----PLPDNA  231 (312)
Q Consensus       164 ~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~~~~----~~~~~~  231 (312)
                      ++     ....+.|+|||.. |..-..-..-.+-=.+++|-|.|..+++-.   .|+.|.+|..++.+..    .++...
T Consensus       211 AVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de  289 (1265)
T KOG1920|consen  211 AVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE  289 (1265)
T ss_pred             EEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence            88     3334899999977 443222111122224799999999988764   5668999997765432    222222


Q ss_pred             hhhhhhhccCCCCceeEE---ecCCceEEEEEecc
Q 021484          232 EKIMKANKQGREDHSRIT---LTPDVIMHVLRLQR  263 (312)
Q Consensus       232 ~~~~~~~~~~~~~~~l~s---~~~d~~i~i~~~~~  263 (312)
                      .. +....|..++..|+.   ......+++|-+.+
T Consensus       290 ~~-ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  290 KE-VEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             cc-hheeeecCCCCceeeeecccccceEEEEEecC
Confidence            22 455567777777776   45556699997654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.48  E-value=8.3e-05  Score=59.85  Aligned_cols=179  Identities=13%  Similarity=0.175  Sum_probs=108.3

Q ss_pred             eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEE-----eCCCeEEEEEcc-CCeecCCCCCCCCc
Q 021484            2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG-----GSDEYARVYDIR-KCHWYSPISSDTPV   75 (312)
Q Consensus         2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~-----~~dg~i~iwd~~-~~~~~~~~~~~~~~   75 (312)
                      .+||.++.+....+..   +++..+-|      ...|+|+| ++|++.     ...|.|-|||.. +.+         .+
T Consensus        31 ~v~D~~~g~~~~~~~a---~~gRHFyG------Hg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~~---------ri   91 (305)
T PF07433_consen   31 LVFDCRTGQLLQRLWA---PPGRHFYG------HGVFSPDG-RLLYTTENDYETGRGVIGVYDAARGYR---------RI   91 (305)
T ss_pred             EEEEcCCCceeeEEcC---CCCCEEec------CEEEcCCC-CEEEEeccccCCCcEEEEEEECcCCcE---------EE
Confidence            4788887764444433   33333333      36799999 677665     345899999998 333         12


Q ss_pred             ccccccccccCCCccEEEEEEccCCCeEEEecCCc-------------------EEEEEcCCCcCCCCCcCCcccccCCC
Q 021484           76 DTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL-------------------VYLFEKNMGLGPSPLSLSPEDLQKRE  136 (312)
Q Consensus        76 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~  136 (312)
                      .+|      ..|.-....+.+.|+|+.|+.+..|.                   +.+.|..++                +
T Consensus        92 ~E~------~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG----------------~  149 (305)
T PF07433_consen   92 GEF------PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG----------------A  149 (305)
T ss_pred             eEe------cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC----------------c
Confidence            222      44455566788999997666654332                   222333333                4


Q ss_pred             CCceEe----cccCCceeeEEEEecCCCCEEEEeccCce-------EEEEeccCCeeEEEee-------cCccceEEEEE
Q 021484          137 EPQVYS----GHRNSQTVKGVNFFGPNDEYVMSGSDCGH-------LFIWKKKGGKLVRLMV-------GDRHVVNQLEP  198 (312)
Q Consensus       137 ~~~~~~----~~~~~~~v~~v~~~s~~~~~l~~~~~dg~-------v~iwd~~~~~~~~~~~-------~~~~~v~~~~~  198 (312)
                      .+....    -|...  +..+++ ..+|..++..-..|.       |.+++.  ++.+..+.       .-.+.+-+|++
T Consensus       150 ll~q~~Lp~~~~~lS--iRHLa~-~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~  224 (305)
T PF07433_consen  150 LLEQVELPPDLHQLS--IRHLAV-DGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAA  224 (305)
T ss_pred             eeeeeecCccccccc--eeeEEe-cCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEE
Confidence            444322    24433  889998 888877666544332       333332  33233332       22357889999


Q ss_pred             cCCCCeEEEEe-CCCcEEEccCCCCCCCC
Q 021484          199 HPHIPMFATCG-IEKTVKLWAPMPTDFPP  226 (312)
Q Consensus       199 ~p~~~~l~t~~-~d~~i~iwd~~~~~~~~  226 (312)
                      ++++..+++.+ .-+.+.+||..++.+..
T Consensus       225 ~~~g~~ia~tsPrGg~~~~~d~~tg~~~~  253 (305)
T PF07433_consen  225 DRDGRLIAVTSPRGGRVAVWDAATGRLLG  253 (305)
T ss_pred             eCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence            99999865555 77899999999988643

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.45  E-value=2.7e-05  Score=61.96  Aligned_cols=180  Identities=11%  Similarity=0.070  Sum_probs=106.9

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS  123 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~  123 (312)
                      ..+++++.++.|..||..+++.......+.++            ...    ....++.+++...++.++.+|..++    
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~------------~~~----~~~~~~~v~v~~~~~~l~~~d~~tG----   96 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDLPGPI------------SGA----PVVDGGRVYVGTSDGSLYALDAKTG----   96 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEECSSCG------------GSG----EEEETTEEEEEETTSEEEEEETTTS----
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeeccccc------------cce----eeecccccccccceeeeEecccCCc----
Confidence            46677789999999999999854332211111            111    1223445555567889999998888    


Q ss_pred             CCcCCcccccCCCCCceE-ecccCC---ceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccc-------
Q 021484          124 PLSLSPEDLQKREEPQVY-SGHRNS---QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV-------  192 (312)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-------  192 (312)
                                  +..... ......   .......+   .+..++++..++.|..+|+++|+.+-........       
T Consensus        97 ------------~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~  161 (238)
T PF13360_consen   97 ------------KVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISS  161 (238)
T ss_dssp             ------------CEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred             ------------ceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceee
Confidence                        555552 322110   01222332   4788888888999999999999998777654322       


Q ss_pred             ---e-EEEEEcCCCCeEEEEeCCCc-EEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          193 ---V-NQLEPHPHIPMFATCGIEKT-VKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       193 ---v-~~~~~~p~~~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                         + ..+.+. ++ .+..++.++. +.+ |+.+++.. ...........  ...++..++..+.++.+..||+.++
T Consensus       162 ~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~~~~~~~~--~~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  162 FSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKL-WSKPISGIYSL--PSVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             ETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEE-EEECSS-ECEC--EECCCTEEEEEETTTEEEEEETTTT
T ss_pred             ecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEE-EEecCCCccCC--ceeeCCEEEEEeCCCEEEEEECCCC
Confidence               1 223332 34 6666666775 666 98888632 11011111110  2234566666668999999998776

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.45  E-value=3.5e-06  Score=72.40  Aligned_cols=142  Identities=13%  Similarity=0.107  Sum_probs=82.2

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV  111 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i  111 (312)
                      ....+.++|++ +.+++ +.||.-.+|.....+                    ....+.....+|.+.+++.+--....|
T Consensus        34 ~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r--------------------~k~~G~g~~~vw~~~n~yAv~~~~~~I   91 (443)
T PF04053_consen   34 YPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWR--------------------NKAFGSGLSFVWSSRNRYAVLESSSTI   91 (443)
T ss_dssp             --SEEEE-TTS-SEEEE-EETTEEEEEETTTTE--------------------EEEEEE-SEEEE-TSSEEEEE-TTS-E
T ss_pred             CCeeEEECCCC-CEEEE-EcCCEEEEEEccCCc--------------------ccccCceeEEEEecCccEEEEECCCeE
Confidence            46899999998 67766 567888888854333                    111344557889996665554568889


Q ss_pred             EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCcc
Q 021484          112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  191 (312)
Q Consensus       112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  191 (312)
                      .++.--+.                ...+.++... .  +..+ | .  |..|...+.+ .|.+||+.+++.+..+...  
T Consensus        92 ~I~kn~~~----------------~~~k~i~~~~-~--~~~I-f-~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--  145 (443)
T PF04053_consen   92 KIYKNFKN----------------EVVKSIKLPF-S--VEKI-F-G--GNLLGVKSSD-FICFYDWETGKLIRRIDVS--  145 (443)
T ss_dssp             EEEETTEE-----------------TT-----SS----EEEE-E----SSSEEEEETT-EEEEE-TTT--EEEEESS---
T ss_pred             EEEEcCcc----------------ccceEEcCCc-c--cceE-E-c--CcEEEEECCC-CEEEEEhhHcceeeEEecC--
Confidence            99743222                2323333221 1  4555 3 3  7777776544 8999999999999988733  


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          192 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       192 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                      +|..+.|++++.+++..+. .++.+++....
T Consensus       146 ~vk~V~Ws~~g~~val~t~-~~i~il~~~~~  175 (443)
T PF04053_consen  146 AVKYVIWSDDGELVALVTK-DSIYILKYNLE  175 (443)
T ss_dssp             E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             CCcEEEEECCCCEEEEEeC-CeEEEEEecch
Confidence            4899999999999988874 47777765433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.43  E-value=0.00016  Score=56.76  Aligned_cols=204  Identities=12%  Similarity=0.162  Sum_probs=114.4

Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEE
Q 021484           36 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLF  114 (312)
Q Consensus        36 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iw  114 (312)
                      ++.+++| ++||. -.|..|.|-..+..-       ...+.. |  .+.+.....-.-++|+||+.+||.+ +.|+|++|
T Consensus         3 ~~~~~~G-k~lAi-~qd~~iEiRsa~Ddf-------~si~~k-c--qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vf   70 (282)
T PF15492_consen    3 LALSSDG-KLLAI-LQDQCIEIRSAKDDF-------SSIIGK-C--QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVF   70 (282)
T ss_pred             eeecCCC-cEEEE-EeccEEEEEeccCCc-------hheeEE-E--ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEE
Confidence            4556777 55555 466777765554321       001111 1  1223334456789999999999987 69999999


Q ss_pred             EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-----CCEEEEeccCceEEEEeccCC-----eeEE
Q 021484          115 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-----DEYVMSGSDCGHLFIWKKKGG-----KLVR  184 (312)
Q Consensus       115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-----~~~l~~~~~dg~v~iwd~~~~-----~~~~  184 (312)
                      |+.....   -.+        .+...+.+.. ...|..+.|..+.     ...|++-..+|.++=|-+..+     +...
T Consensus        71 dl~g~~l---f~I--------~p~~~~~~d~-~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~h  138 (282)
T PF15492_consen   71 DLMGSEL---FVI--------PPAMSFPGDL-SDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENH  138 (282)
T ss_pred             eccccee---EEc--------CcccccCCcc-ccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeE
Confidence            9975310   000        1111111111 1236777773332     235677778888887765322     2222


Q ss_pred             Ee--ec-CccceEEEEEcCCCCeEEEEe-CCC----------cEEEccCCCCCCC---------------------CCC-
Q 021484          185 LM--VG-DRHVVNQLEPHPHIPMFATCG-IEK----------TVKLWAPMPTDFP---------------------PLP-  228 (312)
Q Consensus       185 ~~--~~-~~~~v~~~~~~p~~~~l~t~~-~d~----------~i~iwd~~~~~~~---------------------~~~-  228 (312)
                      .+  .. +...|.++.++|..++|+.|| ...          -+.-|.+-.+...                     .+. 
T Consensus       139 sfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~  218 (282)
T PF15492_consen  139 SFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS  218 (282)
T ss_pred             EEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc
Confidence            33  22 356899999999999876665 221          2455654322110                     000 


Q ss_pred             --------CChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          229 --------DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       229 --------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                              .....+ -....++++..|++...+|.+.+|++..-
T Consensus       219 ~~~fs~~~~~~d~i-~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  219 FKFFSRQGQEQDGI-FKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             eeeeeccccCCCce-EEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence                    011222 22235678889999999999999987653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.42  E-value=3e-05  Score=66.33  Aligned_cols=175  Identities=13%  Similarity=0.066  Sum_probs=95.4

Q ss_pred             CCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCce---eeEEEEecCCCCEEEEeccCceEEEEe
Q 021484          100 SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT---VKGVNFFGPNDEYVMSGSDCGHLFIWK  176 (312)
Q Consensus       100 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~v~~~s~~~~~l~~~~~dg~v~iwd  176 (312)
                      +.+++...++.|+.||..++                +.+..+........   ..+...   .+..++.+..+|.+..+|
T Consensus       146 ~~v~v~~~~g~l~a~d~~tG----------------~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald  206 (377)
T TIGR03300       146 GLVVVRTNDGRLTALDAATG----------------ERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALD  206 (377)
T ss_pred             CEEEEECCCCeEEEEEcCCC----------------ceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEE
Confidence            34444456888999998877                44444332221100   011111   124677888899999999


Q ss_pred             ccCCeeEEEeecCc--c-----ceEEEEEcC--CCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCcee
Q 021484          177 KKGGKLVRLMVGDR--H-----VVNQLEPHP--HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSR  247 (312)
Q Consensus       177 ~~~~~~~~~~~~~~--~-----~v~~~~~~p--~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (312)
                      .++|+.+-......  +     ....+.-+|  .+..++.++.+|.+..||+.+++..-......    .......+..+
T Consensus       207 ~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~~~~~~v  282 (377)
T TIGR03300       207 LQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS----YQGPAVDDNRL  282 (377)
T ss_pred             ccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC----ccCceEeCCEE
Confidence            99998664432110  0     001111111  34567778889999999998876311100000    01111245677


Q ss_pred             EEecCCceEEEEEecccCccceeE-e---------ecCCCccCCCCCCCeEEEeecCCCCC
Q 021484          248 ITLTPDVIMHVLRLQRRQTLAYRE-R---------RYNAADFESDEEEGETYLLGFSDSDA  298 (312)
Q Consensus       248 ~s~~~d~~i~i~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~v~~~~~~~~~~  298 (312)
                      +.++.++.+..+|..+... .|.. .         ......+...+.++.+++++..+++.
T Consensus       283 yv~~~~G~l~~~d~~tG~~-~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       283 YVTDADGVVVALDRRSGSE-LWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             EEECCCCeEEEEECCCCcE-EEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCE
Confidence            7788899999998765532 2221 0         01122333445667788888766643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.41  E-value=0.00021  Score=57.25  Aligned_cols=167  Identities=14%  Similarity=0.131  Sum_probs=101.9

Q ss_pred             eecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCC--------CeEEEEEccCCeecCCCCCCCC
Q 021484            3 QFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD--------EYARVYDIRKCHWYSPISSDTP   74 (312)
Q Consensus         3 ~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~   74 (312)
                      ++|+.+.+...+.......      ......+++++.|+| ++.++....        |.|..++.. ++..        
T Consensus        64 ~~d~~~g~~~~~~~~~~~~------~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~--------  127 (246)
T PF08450_consen   64 VVDPDTGKVTVLADLPDGG------VPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVT--------  127 (246)
T ss_dssp             EEETTTTEEEEEEEEETTC------SCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEE--------
T ss_pred             EEecCCCcEEEEeeccCCC------cccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEE--------
Confidence            4566665544444432111      024578999999999 677765433        456667766 4311        


Q ss_pred             cccccccccccCCCccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec-ccCCceee
Q 021484           75 VDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVK  151 (312)
Q Consensus        75 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~  151 (312)
                             .. ...-.....|+|+|+++.|..+  ..+.|..|++......            ....+.+.. .......-
T Consensus       128 -------~~-~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~g~pD  187 (246)
T PF08450_consen  128 -------VV-ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE------------LSNRRVFIDFPGGPGYPD  187 (246)
T ss_dssp             -------EE-EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC------------EEEEEEEEE-SSSSCEEE
T ss_pred             -------EE-ecCcccccceEECCcchheeecccccceeEEEeccccccc------------eeeeeeEEEcCCCCcCCC
Confidence                   11 1123456799999999865543  4888999998643100            001122211 11112367


Q ss_pred             EEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEE-cCCCCeEEE
Q 021484          152 GVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP-HPHIPMFAT  207 (312)
Q Consensus       152 ~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~-~p~~~~l~t  207 (312)
                      .+++ +.+|++.++....+.|.+++.+ |+.+..+......+++++| -|+.+.|..
T Consensus       188 G~~v-D~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  188 GLAV-DSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             EEEE-BTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred             cceE-cCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence            8888 8899988888889999999988 8888888766568999999 466565433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.41  E-value=9.1e-05  Score=63.42  Aligned_cols=213  Identities=8%  Similarity=-0.016  Sum_probs=120.1

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS  123 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~  123 (312)
                      ..+++++.+|.+..+|..+++.....+....            ...   ..+. .++.+++.+.++.++.+|..++    
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~------------~~~---~p~v-~~~~v~v~~~~g~l~ald~~tG----  125 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGKRLWRVDLDER------------LSG---GVGA-DGGLVFVGTEKGEVIALDAEDG----  125 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCcEeeeecCCCC------------ccc---ceEE-cCCEEEEEcCCCEEEEEECCCC----
Confidence            4788888899999999998885433221111            011   1122 1334455557999999999887    


Q ss_pred             CCcCCcccccCCCCCceEecccCCceeeE-EEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE-----EEE
Q 021484          124 PLSLSPEDLQKREEPQVYSGHRNSQTVKG-VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-----QLE  197 (312)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-----~~~  197 (312)
                                  +.+....... .  +.+ ...   .+..++.++.+|.|+.+|.++|+.+-.+......+.     ...
T Consensus       126 ------------~~~W~~~~~~-~--~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~  187 (377)
T TIGR03300       126 ------------KELWRAKLSS-E--VLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPV  187 (377)
T ss_pred             ------------cEeeeeccCc-e--eecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCE
Confidence                        4443332211 1  211 111   245677788899999999999988766653322111     111


Q ss_pred             EcCCCCeEEEEeCCCcEEEccCCCCCCC---CCCCC--hhhhhhh--hccCC--CCceeEEecCCceEEEEEecccCccc
Q 021484          198 PHPHIPMFATCGIEKTVKLWAPMPTDFP---PLPDN--AEKIMKA--NKQGR--EDHSRITLTPDVIMHVLRLQRRQTLA  268 (312)
Q Consensus       198 ~~p~~~~l~t~~~d~~i~iwd~~~~~~~---~~~~~--~~~~~~~--~~~~~--~~~~l~s~~~d~~i~i~~~~~~~~~~  268 (312)
                      .  .+..++.+..++.+..+|+++++..   .+...  .......  ....+  .+..++..+.++.++.+|..++ ...
T Consensus       188 ~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG-~~~  264 (377)
T TIGR03300       188 I--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG-RVL  264 (377)
T ss_pred             E--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC-cEE
Confidence            1  1246677778899999998877531   11100  0000000  00111  3456777888899999998665 333


Q ss_pred             eeEe-------ecCCCccCCCCCCCeEEEeecCCCC
Q 021484          269 YRER-------RYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       269 ~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      |...       ......+.....++.++.+|..+++
T Consensus       265 W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       265 WKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             EeeccCCccCceEeCCEEEEECCCCeEEEEECCCCc
Confidence            4311       1122333334566778888876664

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.40  E-value=1.1e-05  Score=69.07  Aligned_cols=73  Identities=12%  Similarity=0.171  Sum_probs=58.5

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-  107 (312)
                      .+..|.+++++|+. ..|+.|+.||+|.+||...+--           .+      ....-.++.++|+|+|.+++.++ 
T Consensus       258 L~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t-----------~~------~ka~~~P~~iaWHp~gai~~V~s~  319 (545)
T PF11768_consen  258 LPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVT-----------LL------AKAEFIPTLIAWHPDGAIFVVGSE  319 (545)
T ss_pred             cCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCee-----------ee------eeecccceEEEEcCCCcEEEEEcC
Confidence            57789999999998 8999999999999999876531           00      11234467899999999888875 


Q ss_pred             CCcEEEEEcCCC
Q 021484          108 DELVYLFEKNMG  119 (312)
Q Consensus       108 d~~i~iwd~~~~  119 (312)
                      .|.+.+||+.-.
T Consensus       320 qGelQ~FD~ALs  331 (545)
T PF11768_consen  320 QGELQCFDMALS  331 (545)
T ss_pred             CceEEEEEeecC
Confidence            799999998643

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=6.7e-06  Score=67.98  Aligned_cols=206  Identities=14%  Similarity=0.067  Sum_probs=139.1

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~  106 (312)
                      .|++.|+.+.-...  +++.+++.||.++.|--..-.-          .. -..+. ..|...|.+++.+-++.++.+ +
T Consensus         7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isG----------vE-fVKhF-raHL~~I~sl~~S~dg~L~~Sv~   72 (558)
T KOG0882|consen    7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISG----------VE-FVKHF-RAHLGVILSLAVSYDGWLFRSVE   72 (558)
T ss_pred             cccceeeeEeeehh--heEEeeecchhhhhcCCCCccc----------ee-ehhhh-HHHHHHHHhhhccccceeEeecc
Confidence            38888888776654  6999999999999998653110          01 12222 567888999999999999998 4


Q ss_pred             c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC---CEEEEeccCceEEEEeccCC--
Q 021484          107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---EYVMSGSDCGHLFIWKKKGG--  180 (312)
Q Consensus       107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~---~~l~~~~~dg~v~iwd~~~~--  180 (312)
                      . |..++++|+.+-                ..+..++...-++.+..+ . ++..   ..-++.-.+|.+.++|-...  
T Consensus        73 d~Dhs~KvfDvEn~----------------DminmiKL~~lPg~a~wv-~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~  134 (558)
T KOG0882|consen   73 DPDHSVKVFDVENF----------------DMINMIKLVDLPGFAEWV-T-SKGDKISLIAVSLFKSGKIFVVDGFGDFC  134 (558)
T ss_pred             CcccceeEEEeecc----------------chhhhcccccCCCceEEe-c-CCCCeeeeEEeecccCCCcEEECCcCCcC
Confidence            5 899999999875                232222211111112222 1 2221   22334456889999996543  


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC------CC-CCCC--------CChhhhhhhhccCCCCc
Q 021484          181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT------DF-PPLP--------DNAEKIMKANKQGREDH  245 (312)
Q Consensus       181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~------~~-~~~~--------~~~~~~~~~~~~~~~~~  245 (312)
                      +....-.-|..+|..+.+.|.+..+++....|.|.-|.....      .+ ..+.        ...+.......+++++.
T Consensus       135 q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~  214 (558)
T KOG0882|consen  135 QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA  214 (558)
T ss_pred             ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC
Confidence            334444568999999999999999999999999999998741      01 0111        12233445556777888


Q ss_pred             eeEEecCCceEEEEEecccC
Q 021484          246 SRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       246 ~l~s~~~d~~i~i~~~~~~~  265 (312)
                      .+.+.++|..+++++++++.
T Consensus       215 qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  215 QISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             cccccCcccEEEEEEeccch
Confidence            99999999999999987763

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=2.2e-05  Score=69.46  Aligned_cols=181  Identities=13%  Similarity=0.170  Sum_probs=116.4

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-C
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d  108 (312)
                      ...++|++++.   ..|+-|+.+|.|++++....                +... ..|...      ..+|+++++|+ |
T Consensus        39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~----------------~~~~-~~~s~~------~~~Gey~asCS~D   92 (846)
T KOG2066|consen   39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGN----------------PKTN-FDHSSS------ILEGEYVASCSDD   92 (846)
T ss_pred             hhHHHHHHhhc---ceeeeccccceEEEEecCCc----------------cccc-cccccc------ccCCceEEEecCC
Confidence            45677888865   68999999999999997632                1111 233332      56789999985 9


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-----CCEEEEeccCceEEEEecc---CC
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-----DEYVMSGSDCGHLFIWKKK---GG  180 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-----~~~l~~~~~dg~v~iwd~~---~~  180 (312)
                      |+|.|-.+.+.                +....+.-+   .++.++++ +|+     .+.+++|+..| +.++.-+   ..
T Consensus        93 Gkv~I~sl~~~----------------~~~~~~df~---rpiksial-~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk  151 (846)
T KOG2066|consen   93 GKVVIGSLFTD----------------DEITQYDFK---RPIKSIAL-HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK  151 (846)
T ss_pred             CcEEEeeccCC----------------ccceeEecC---CcceeEEe-ccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence            99999988776                444444422   34889998 787     56789999988 7777632   22


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC-CCCCChhhh-----hhhhccCCCCceeEEecCCc
Q 021484          181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKI-----MKANKQGREDHSRITLTPDV  254 (312)
Q Consensus       181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~l~s~~~d~  254 (312)
                      ..+ .+....++|.++.|  .|+++|-++ |--|++||+..++.. .++.....+     ..-..|..+.+++  .+-..
T Consensus       152 ~~v-~l~~~eG~I~~i~W--~g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV--IGW~d  225 (846)
T KOG2066|consen  152 DSV-VLSEGEGPIHSIKW--RGNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV--IGWGD  225 (846)
T ss_pred             cce-eeecCccceEEEEe--cCcEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE--EecCC
Confidence            222 34455689999999  677887776 556899998877632 222111111     1122233443333  34455


Q ss_pred             eEEEEEecc
Q 021484          255 IMHVLRLQR  263 (312)
Q Consensus       255 ~i~i~~~~~  263 (312)
                      +|++..++.
T Consensus       226 ~v~i~~I~~  234 (846)
T KOG2066|consen  226 SVKICSIKK  234 (846)
T ss_pred             eEEEEEEec
Confidence            667777763

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.38  E-value=8.7e-08  Score=82.13  Aligned_cols=202  Identities=13%  Similarity=0.188  Sum_probs=128.5

Q ss_pred             cceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEEec-
Q 021484           31 IRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-  107 (312)
Q Consensus        31 ~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~-  107 (312)
                      ..+.|+++.-+.. .+++.|..+|.|-+-.++...-             .......++....++++|++-. ..||+|- 
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagld  123 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------SSAEVTPGYARPCTSLAWNELDTNHLAAGLD  123 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCccc-------------ccceecccccccccccccccccHHHHHhhhh
Confidence            3567777765432 5788899999999998875541             1223335677889999999854 5777762 


Q ss_pred             ----CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec-ccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-e
Q 021484          108 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-K  181 (312)
Q Consensus       108 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~  181 (312)
                          |..+.|||+.+... +    +       +....|.+ ....  ..+++| -.+.+.+.+|.....++++|++.. .
T Consensus       124 khrnds~~~Iwdi~s~lt-v----P-------ke~~~fs~~~l~g--qns~cw-lrd~klvlaGm~sr~~~ifdlRqs~~  188 (783)
T KOG1008|consen  124 KHRNDSSLKIWDINSLLT-V----P-------KESPLFSSSTLDG--QNSVCW-LRDTKLVLAGMTSRSVHIFDLRQSLD  188 (783)
T ss_pred             hhcccCCccceecccccC-C----C-------ccccccccccccC--cccccc-ccCcchhhcccccchhhhhhhhhhhh
Confidence                66799999987621 0    0       11111222 2222  568888 688899999999999999999832 2


Q ss_pred             eEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEcc-CCCCC--CCCCCCC----hhhhhhhhccCCCCceeEEecCC
Q 021484          182 LVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWA-PMPTD--FPPLPDN----AEKIMKANKQGREDHSRITLTPD  253 (312)
Q Consensus       182 ~~~~~~~~~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd-~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~d  253 (312)
                      ....+  .+..+..+...| .+.++++-. ||.|.+|| .+.-+  +..+...    .+.+.+.++.......+++.+.|
T Consensus       189 ~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd  265 (783)
T KOG1008|consen  189 SVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD  265 (783)
T ss_pred             hhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC
Confidence            22222  234566778888 777887766 99999999 33322  1111111    22355555444445555555555


Q ss_pred             -ceEEEEEecc
Q 021484          254 -VIMHVLRLQR  263 (312)
Q Consensus       254 -~~i~i~~~~~  263 (312)
                       ++|+.+++..
T Consensus       266 S~tIrlydi~~  276 (783)
T KOG1008|consen  266 SITIRLYDICV  276 (783)
T ss_pred             cceEEEecccc
Confidence             6888888753

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.34  E-value=3.9e-07  Score=81.16  Aligned_cols=189  Identities=10%  Similarity=0.122  Sum_probs=125.3

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-  105 (312)
                      ..|...-+|++|+-.. +.|+.|+..|.|++|++.+|..              .... .+|..+|+-+.=+.+|..+.+ 
T Consensus      1098 rd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~--------------e~s~-ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSM--------------EESV-NCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred             hccccceeeEEeecCC-ceEEeeeccceEEEEEccCccc--------------cccc-cccccccccccccCCcceeeee
Confidence            3577889999999987 8999999999999999999973              2222 789999999999999985554 


Q ss_pred             ec--CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484          106 YN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       106 ~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                      ++  .-...+|++..-.               .....|.+      -.++.| +...++-+.|+......+||+.++.++
T Consensus      1162 ss~S~PlsaLW~~~s~~---------------~~~Hsf~e------d~~vkF-sn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTG---------------GPRHSFDE------DKAVKF-SNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred             ccccCchHHHhcccccc---------------Cccccccc------cceeeh-hhhHHHHHhcccccceEEEecccCcHH
Confidence            33  3367899986531               34344432      356777 666666667777778899999999887


Q ss_pred             EEeec----CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021484          184 RLMVG----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  258 (312)
Q Consensus       184 ~~~~~----~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  258 (312)
                      .++-.    ..-.-+.+.|+|+..+++-   ||  -+||.+..+ +..+....  .....-+++.+..++--+     .|
T Consensus      1220 ~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINS-----EI 1287 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINS-----EI 1287 (1516)
T ss_pred             HHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEeec-----hh
Confidence            76421    1122367889999887654   33  479988654 23322111  112222444444433322     47


Q ss_pred             EEecccC
Q 021484          259 LRLQRRQ  265 (312)
Q Consensus       259 ~~~~~~~  265 (312)
                      ||+++..
T Consensus      1288 wD~RTF~ 1294 (1516)
T KOG1832|consen 1288 WDMRTFK 1294 (1516)
T ss_pred             hhhHHHH
Confidence            7777653

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.32  E-value=4.4e-05  Score=67.50  Aligned_cols=155  Identities=15%  Similarity=0.205  Sum_probs=109.0

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--------
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--------  100 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------  100 (312)
                      |+..-.++.|+|.|  +||-|+. ..|.+-|..+.+.+..               +..|+..|+.+.|.|..        
T Consensus        14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs---------------ie~h~s~V~~VrWap~~~p~~llS~   75 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS---------------IELHQSAVTSVRWAPAPSPRDLLSP   75 (1062)
T ss_pred             CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc---------------cccCccceeEEEeccCCCchhccCc
Confidence            45556789999988  7777664 6788889888774322               26678889999997731        


Q ss_pred             ---C-eEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe--cCCC-CEEEEeccCceE
Q 021484          101 ---E-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF--GPND-EYVMSGSDCGHL  172 (312)
Q Consensus       101 ---~-~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--s~~~-~~l~~~~~dg~v  172 (312)
                         . +||++. .|.|.+||....                ..+..+..+..+  +..++|.  -++. ..|++-.....|
T Consensus        76 ~~~~lliAsaD~~GrIil~d~~~~----------------s~~~~l~~~~~~--~qdl~W~~~rd~Srd~LlaIh~ss~l  137 (1062)
T KOG1912|consen   76 SSSQLLIASADISGRIILVDFVLA----------------SVINWLSHSNDS--VQDLCWVPARDDSRDVLLAIHGSSTL  137 (1062)
T ss_pred             cccceeEEeccccCcEEEEEehhh----------------hhhhhhcCCCcc--hhheeeeeccCcchheeEEecCCcEE
Confidence               2 455664 899999999876                455556656644  7888873  2233 567777788899


Q ss_pred             EEEeccCCeeEEEeecCccceEEEEEcCC-CCeEEEEeCCCcEEEccC
Q 021484          173 FIWKKKGGKLVRLMVGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       173 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~  219 (312)
                      .+|+..+|+.+-..........++.+.|- .+.+..-+..|.+-+-+.
T Consensus       138 vLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  138 VLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             EEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence            99999999987766544556777888884 445655555666666553

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.31  E-value=0.00038  Score=58.82  Aligned_cols=208  Identities=11%  Similarity=0.100  Sum_probs=121.7

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCC---------------eEEEEEccCCeecCCCCCCC------Cccccc-----------
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDE---------------YARVYDIRKCHWYSPISSDT------PVDTFC-----------   79 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~------~~~~~~-----------   79 (312)
                      .|..+.|+|.+ .+|.+=+..+               .+.+||+.++.++.......      ++-.|.           
T Consensus        73 ~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~  151 (561)
T COG5354          73 DVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG  151 (561)
T ss_pred             CceecccCccc-ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence            48889999998 7888754333               49999999998764433211      111110           


Q ss_pred             ----cccc---ccC------CCccEEEEEEccCCC--eEEE-e-----cCCcEEEEEcCCCcCCCCCcCCcccccCCCCC
Q 021484           80 ----PRHL---IGK------NNIHITGLAYSNTSE--LLIS-Y-----NDELVYLFEKNMGLGPSPLSLSPEDLQKREEP  138 (312)
Q Consensus        80 ----~~~~---~~~------~~~~i~~~~~~~~~~--~l~s-~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  138 (312)
                          ...+   +..      ....|....|+|.+.  .|+. .     .++.+++|.+..+                ..+
T Consensus       152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~----------------s~l  215 (561)
T COG5354         152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN----------------SVL  215 (561)
T ss_pred             CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC----------------Cee
Confidence                0000   000      124566777777643  3332 1     2566778777644                222


Q ss_pred             ceEecccCCceeeEEEEecCCCCEEEEec-----------cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEE
Q 021484          139 QVYSGHRNSQTVKGVNFFGPNDEYVMSGS-----------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFAT  207 (312)
Q Consensus       139 ~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-----------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t  207 (312)
                      ..-.-....  =..+.| .+.|++|++--           ....++++++.. .-+.....-.++|.+++|.|.++.+++
T Consensus       216 ~tk~lfk~~--~~qLkW-~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S~~F~v  291 (561)
T COG5354         216 VTKNLFKVS--GVQLKW-QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSSRFAV  291 (561)
T ss_pred             eeeeeEeec--ccEEEE-ecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccceeeeecccCCceeE
Confidence            222211211  245666 77777765432           135678888763 333333355789999999999988655


Q ss_pred             Ee--CCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC---ceEEEEEecc
Q 021484          208 CG--IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD---VIMHVLRLQR  263 (312)
Q Consensus       208 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~i~~~~~  263 (312)
                      .+  .+..+.++|+++.-...++......   ..+++..++++..+.|   +.+.+|+...
T Consensus       292 i~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT---~~fsp~~r~il~agF~nl~gni~i~~~~~  349 (561)
T COG5354         292 ISGYMPASVSVFDLRGNLRFYFPEQKRNT---IFFSPHERYILFAGFDNLQGNIEIFDPAG  349 (561)
T ss_pred             EecccccceeecccccceEEecCCccccc---ccccCcccEEEEecCCccccceEEeccCC
Confidence            54  7889999999988544444333322   2256666777765555   6778887543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=1.8e-05  Score=67.15  Aligned_cols=140  Identities=9%  Similarity=0.110  Sum_probs=95.8

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec---C-
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---D-  108 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---d-  108 (312)
                      =+-+.|||.| .+|+|-..-| |.+|--.+...         ++.       -.|. .|.-+.|||..++|++.+   . 
T Consensus       213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~f~r---------~~R-------F~Hp-~Vq~idfSP~EkYLVT~s~~p~~  273 (698)
T KOG2314|consen  213 ETYVRWSPKG-TYLVTFHKQG-IALWGGESFDR---------IQR-------FYHP-GVQFIDFSPNEKYLVTYSPEPII  273 (698)
T ss_pred             eeeEEecCCc-eEEEEEeccc-eeeecCccHHH---------HHh-------ccCC-CceeeecCCccceEEEecCCccc
Confidence            4568999999 8999887755 77887665431         111       2343 478899999999999842   1 


Q ss_pred             --------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceee-EEEEecCCCCEEEEeccCceEEEEeccC
Q 021484          109 --------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK-GVNFFGPNDEYVMSGSDCGHLFIWKKKG  179 (312)
Q Consensus       109 --------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~s~~~~~l~~~~~dg~v~iwd~~~  179 (312)
                              ..++|||+.+|                ...+.|.....+..+. -..| |.+++|+|.-.. ..|.||+..+
T Consensus       274 ~~~~d~e~~~l~IWDI~tG----------------~lkrsF~~~~~~~~~WP~frW-S~DdKy~Arm~~-~sisIyEtps  335 (698)
T KOG2314|consen  274 VEEDDNEGQQLIIWDIATG----------------LLKRSFPVIKSPYLKWPIFRW-SHDDKYFARMTG-NSISIYETPS  335 (698)
T ss_pred             cCcccCCCceEEEEEcccc----------------chhcceeccCCCccccceEEe-ccCCceeEEecc-ceEEEEecCc
Confidence                    46999999998                6777777643332232 3456 889999987665 5788998765


Q ss_pred             CeeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021484          180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       180 ~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~  209 (312)
                      ..++..-...-..|....|+|.+..||--.
T Consensus       336 f~lld~Kslki~gIr~FswsP~~~llAYwt  365 (698)
T KOG2314|consen  336 FMLLDKKSLKISGIRDFSWSPTSNLLAYWT  365 (698)
T ss_pred             eeeecccccCCccccCcccCCCcceEEEEc
Confidence            443322222346788899999988776543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=4.1e-05  Score=67.90  Aligned_cols=140  Identities=11%  Similarity=0.072  Sum_probs=93.6

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-----CCeEEEec-CCcEEEEE
Q 021484           42 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-----SELLISYN-DELVYLFE  115 (312)
Q Consensus        42 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~s~~-d~~i~iwd  115 (312)
                      | .++++++.||+|.|-.+.+.+..            +.    ..-..++.+++++|+     .+.+++|+ .| +.++.
T Consensus        83 G-ey~asCS~DGkv~I~sl~~~~~~------------~~----~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e  144 (846)
T KOG2066|consen   83 G-EYVASCSDDGKVVIGSLFTDDEI------------TQ----YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE  144 (846)
T ss_pred             C-ceEEEecCCCcEEEeeccCCccc------------ee----EecCCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence            5 89999999999999998877621            11    122567899999998     24677765 55 77775


Q ss_pred             cCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccce--
Q 021484          116 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV--  193 (312)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v--  193 (312)
                      -+--                ........+...++|.++.|   .|+++|-++.+| |+|||+.+.+.+..++.....+  
T Consensus       145 r~wl----------------gnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~  204 (846)
T KOG2066|consen  145 RNWL----------------GNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP  204 (846)
T ss_pred             hhhh----------------cCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc
Confidence            4321                11111233444456999999   488888877654 7899999888887765332322  


Q ss_pred             ----EEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          194 ----NQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       194 ----~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                          ..+.|.++.+.++-  ..-+|+|..++.
T Consensus       205 e~fpphl~W~~~~~LVIG--W~d~v~i~~I~~  234 (846)
T KOG2066|consen  205 ELFPPHLHWQDEDRLVIG--WGDSVKICSIKK  234 (846)
T ss_pred             ccCCCceEecCCCeEEEe--cCCeEEEEEEec
Confidence                35778777655543  346888888873

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.29  E-value=2.1e-05  Score=70.59  Aligned_cols=149  Identities=14%  Similarity=0.142  Sum_probs=101.1

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-----
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-----  107 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-----  107 (312)
                      |+-|+.+  + +.+.+|...|+|.+-|..+.+.               .+.+..|++.|..+  .-.|+.|++++     
T Consensus       180 v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~---------------iht~~aHs~siSDf--Dv~GNlLitCG~S~R~  239 (1118)
T KOG1275|consen  180 VTIMRYN--N-RNLFCGDTRGTVFLRDPNSFET---------------IHTFDAHSGSISDF--DVQGNLLITCGYSMRR  239 (1118)
T ss_pred             eEEEEec--C-cEEEeecccceEEeecCCcCce---------------eeeeeccccceeee--eccCCeEEEeeccccc
Confidence            5555443  3 7899999999999999998762               22238899888765  45677777742     


Q ss_pred             -----CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEec---cC
Q 021484          108 -----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK---KG  179 (312)
Q Consensus       108 -----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~---~~  179 (312)
                           |.-|+|||+++.                +.+..+.-+..+   .-+.|++.-...+++++..|...+-|.   .+
T Consensus       240 ~~l~~D~FvkVYDLRmm----------------ral~PI~~~~~P---~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  240 YNLAMDPFVKVYDLRMM----------------RALSPIQFPYGP---QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             ccccccchhhhhhhhhh----------------hccCCcccccCc---hhhhhcccccceEEEEecccceeeccccccCC
Confidence                 223789999876                333333333322   335553333567888888999999883   32


Q ss_pred             C-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484          180 G-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  220 (312)
Q Consensus       180 ~-~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  220 (312)
                      . ..+..+......+..+.++++++.++.+..+|.|.+|.-.
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence            2 1122222233458999999999999999999999999843

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.29  E-value=8.2e-06  Score=69.93  Aligned_cols=72  Identities=13%  Similarity=0.260  Sum_probs=60.3

Q ss_pred             eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      .+.++++ +|+...|+.|+.||.|.+||...+..  .+....-.++.++|||+|.++++|+..|.+.+||+.-..
T Consensus       261 ~v~~ca~-sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  261 QVICCAR-SPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             cceEEec-CcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            3889998 99999999999999999999876532  232344567899999999999999999999999976543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.28  E-value=6.2e-05  Score=66.62  Aligned_cols=202  Identities=10%  Similarity=0.062  Sum_probs=128.3

Q ss_pred             CCccceEEEEEcCCC-----------CcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE
Q 021484           28 MNSIRLNAIVIDPRN-----------PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY   96 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   96 (312)
                      .|...|+.+.|.|..           .-+||++...|.|.+||...+..               ...+..|..++..++|
T Consensus        53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~---------------~~~l~~~~~~~qdl~W  117 (1062)
T KOG1912|consen   53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV---------------INWLSHSNDSVQDLCW  117 (1062)
T ss_pred             cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh---------------hhhhcCCCcchhheee
Confidence            378899999998731           13677788899999999987752               2222667788888988


Q ss_pred             ccCC---C-eEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCce
Q 021484           97 SNTS---E-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH  171 (312)
Q Consensus        97 ~~~~---~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~  171 (312)
                      -+..   + +|++ .....+.+|+..+|                .....+....  ....|+.+.+-+.+.+..-+..|.
T Consensus       118 ~~~rd~Srd~LlaIh~ss~lvLwntdtG----------------~k~Wk~~ys~--~iLs~f~~DPfd~rh~~~l~s~g~  179 (1062)
T KOG1912|consen  118 VPARDDSRDVLLAIHGSSTLVLWNTDTG----------------EKFWKYDYSH--EILSCFRVDPFDSRHFCVLGSKGF  179 (1062)
T ss_pred             eeccCcchheeEEecCCcEEEEEEccCC----------------ceeeccccCC--cceeeeeeCCCCcceEEEEccCce
Confidence            7643   2 4444 46899999999988                4544444333  236677773335666666677788


Q ss_pred             EEEEecc-------CCeeEEEeecCcc-----------------c--------eEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          172 LFIWKKK-------GGKLVRLMVGDRH-----------------V--------VNQLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       172 v~iwd~~-------~~~~~~~~~~~~~-----------------~--------v~~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                      +.+-+.-       .++..+.-..|..                 +        ...++|+|.-+.++.......+.++|+
T Consensus       180 vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dl  259 (1062)
T KOG1912|consen  180 VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDL  259 (1062)
T ss_pred             EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcc
Confidence            8777642       1233322222221                 0        122567888776656666789999999


Q ss_pred             CCCCC-CCCCCChhhhhhhhccCC--CCceeEEecCCceEEEEEecc
Q 021484          220 MPTDF-PPLPDNAEKIMKANKQGR--EDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       220 ~~~~~-~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      +-... ..++-... -.....+.+  ....|+.+-.||.+.+|.-+.
T Consensus       260 e~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  260 EYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            86653 22221122 112233334  466889999999999997543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.27  E-value=0.00011  Score=68.14  Aligned_cols=172  Identities=10%  Similarity=0.117  Sum_probs=102.5

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCC-------CCC--ccccccccccc---------------
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-------DTP--VDTFCPRHLIG---------------   85 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~--~~~~~~~~~~~---------------   85 (312)
                      ..+|.+++|+|++ ..++..+..+++.+-.- +..++.+-..       ...  +..-...+.+.               
T Consensus       109 d~GI~aaswS~De-e~l~liT~~~tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e  186 (1265)
T KOG1920|consen  109 DNGISAASWSPDE-ELLALITGRQTLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE  186 (1265)
T ss_pred             cCceEEEeecCCC-cEEEEEeCCcEEEEEec-cccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence            4589999999999 78888888777766442 1221111100       000  00000000000               


Q ss_pred             ---C---CCccEEEEEEccCCCeEEEe-----cC-CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEE
Q 021484           86 ---K---NNIHITGLAYSNTSELLISY-----ND-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  153 (312)
Q Consensus        86 ---~---~~~~i~~~~~~~~~~~l~s~-----~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v  153 (312)
                         +   -...=++|.|-.||+++|++     .+ ..|++||.+ +                .+-.+-....  ..-.++
T Consensus       187 k~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g----------------~Lns~se~~~--~l~~~L  247 (1265)
T KOG1920|consen  187 KALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G----------------ALNSTSEPVE--GLQHSL  247 (1265)
T ss_pred             ccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c----------------hhhcccCccc--ccccce
Confidence               0   11122468999999988872     25 789999987 3                1211111111  224678


Q ss_pred             EEecCCCCEEEEec---cCceEEEEecc---CCeeEEEeecCccceEEEEEcCCCCeEEE---EeCCCcEEEccCCCCC
Q 021484          154 NFFGPNDEYVMSGS---DCGHLFIWKKK---GGKLVRLMVGDRHVVNQLEPHPHIPMFAT---CGIEKTVKLWAPMPTD  223 (312)
Q Consensus       154 ~~~s~~~~~l~~~~---~dg~v~iwd~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~t---~~~d~~i~iwd~~~~~  223 (312)
                      +| -|.|..+++-.   .|+.|.+|..+   .++....+......|..++|+.++..||+   ......|++|-+....
T Consensus       248 sW-kPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  248 SW-KPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             ee-cCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            88 89999988753   46678888743   23333333434445899999999999877   4445559999988764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.18  E-value=2.5e-05  Score=70.18  Aligned_cols=177  Identities=10%  Similarity=0.052  Sum_probs=123.3

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP  122 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~  122 (312)
                      ..++.|+-...+..+|+++.+....            .   .-....|+-+.  .+++++.+| ..|+|.+-|.++.   
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~------------~---~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~---  207 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRT------------T---NVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF---  207 (1118)
T ss_pred             cceeecchhhheeeeecccceeeee------------e---eccCCceEEEE--ecCcEEEeecccceEEeecCCcC---
Confidence            4566666666777788887752211            0   11122355544  356788887 4999999999987   


Q ss_pred             CCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---------CceEEEEeccCCeeEEEeecCccce
Q 021484          123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---------CGHLFIWKKKGGKLVRLMVGDRHVV  193 (312)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v  193 (312)
                                   +.+.++..|.+.  +.++   +..|+.|++++.         |..|+|||++..+.+..+.-+.++ 
T Consensus       208 -------------~~iht~~aHs~s--iSDf---Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-  268 (1118)
T KOG1275|consen  208 -------------ETIHTFDAHSGS--ISDF---DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-  268 (1118)
T ss_pred             -------------ceeeeeeccccc--eeee---eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-
Confidence                         788999999976  7664   567999998875         667899999988877766655544 


Q ss_pred             EEEEEcCCCCe-EEEEeCCCcEEEccCCC---CCCCC--CCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          194 NQLEPHPHIPM-FATCGIEKTVKLWAPMP---TDFPP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       194 ~~~~~~p~~~~-l~t~~~d~~i~iwd~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      .-+.|+|.-.. ++.++..|...+-|..+   .....  +...... +.....++++..++-+..++.+.+|.
T Consensus       269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~-i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSG-ISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCc-ceeEEecCCCceEEEecccCcEeeec
Confidence            56889997654 78888889999988433   22211  1112222 33344677888999999999999997

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.12  E-value=0.00021  Score=56.90  Aligned_cols=139  Identities=14%  Similarity=0.101  Sum_probs=84.1

Q ss_pred             CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCccc
Q 021484           52 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPED  131 (312)
Q Consensus        52 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~  131 (312)
                      +|.|..||..+++.+....            + ..............++.+++...++.|+.||..++            
T Consensus         2 ~g~l~~~d~~tG~~~W~~~------------~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG------------   56 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYD------------L-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTG------------   56 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEE------------C-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTS------------
T ss_pred             CCEEEEEECCCCCEEEEEE------------C-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCC------------
Confidence            6889999998887543211            1 10012222223333444555557999999999888            


Q ss_pred             ccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe-ecCc---cceEEEEEcCCCCeEEE
Q 021484          132 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-VGDR---HVVNQLEPHPHIPMFAT  207 (312)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~---~~v~~~~~~p~~~~l~t  207 (312)
                          +.+..+......  .....   ..+..+++++.++.|..+|..+|+.+-.. ....   ...........+..++.
T Consensus        57 ----~~~W~~~~~~~~--~~~~~---~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (238)
T PF13360_consen   57 ----KVLWRFDLPGPI--SGAPV---VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV  127 (238)
T ss_dssp             ----EEEEEEECSSCG--GSGEE---EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE
T ss_pred             ----CEEEEeeccccc--cceee---ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEE
Confidence                566555542211  11111   23555666668889999999999988774 3221   11122233334778888


Q ss_pred             EeCCCcEEEccCCCCCC
Q 021484          208 CGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       208 ~~~d~~i~iwd~~~~~~  224 (312)
                      +..++.|..+|++++++
T Consensus       128 ~~~~g~l~~~d~~tG~~  144 (238)
T PF13360_consen  128 GTSSGKLVALDPKTGKL  144 (238)
T ss_dssp             EETCSEEEEEETTTTEE
T ss_pred             EeccCcEEEEecCCCcE
Confidence            88899999999998864

...

>smart00320 WD40 WD40 repeats

Probab=98.08  E-value=1.9e-05  Score=42.35  Aligned_cols=39  Identities=26%  Similarity=0.476  Sum_probs=34.8

Q ss_pred             CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021484          180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA  218 (312)
Q Consensus       180 ~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd  218 (312)
                      +++...+..|...|.++.|+|.+..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456677778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.0008  Score=60.53  Aligned_cols=159  Identities=11%  Similarity=0.137  Sum_probs=97.5

Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEE-ecC-C----
Q 021484           37 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YND-E----  109 (312)
Q Consensus        37 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d-~----  109 (312)
                      +|++.+ ..++.|+.+|.|.+++-.-.-          +..|      ..+...+...-+.-++ .+|++ +.| +    
T Consensus        30 c~~s~~-~~vvigt~~G~V~~Ln~s~~~----------~~~f------qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~   92 (933)
T KOG2114|consen   30 CCSSST-GSVVIGTADGRVVILNSSFQL----------IRGF------QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPV   92 (933)
T ss_pred             EEcCCC-ceEEEeeccccEEEeccccee----------eehh------eecchhhhhHhhcccCceEEEEEeecCCCCce
Confidence            466766 699999999999888754221          1111      3444443333344444 47776 543 3    


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCC---ceEe--cccCCceeeEEEEecCCCCEEEEeccCceEEEEecc---C-C
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEP---QVYS--GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---G-G  180 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~---~-~  180 (312)
                      .+++|+++...+...          ..++   +.+.  ....+.++.+++. +.+-+.+++|-.+|.|..+.-+   . +
T Consensus        93 llkiw~lek~~~n~s----------P~c~~~~ri~~~~np~~~~p~s~l~V-s~~l~~Iv~Gf~nG~V~~~~GDi~RDrg  161 (933)
T KOG2114|consen   93 LLKIWDLEKVDKNNS----------PQCLYEHRIFTIKNPTNPSPASSLAV-SEDLKTIVCGFTNGLVICYKGDILRDRG  161 (933)
T ss_pred             EEEEecccccCCCCC----------cceeeeeeeeccCCCCCCCcceEEEE-EccccEEEEEecCcEEEEEcCcchhccc
Confidence            589999976521110          0222   2222  1222345888888 7889999999999999988521   1 2


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      ....-......+|+.+++..++..++-+..-..|.+|.+.+..
T Consensus       162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~  204 (933)
T KOG2114|consen  162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT  204 (933)
T ss_pred             cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence            2111222345799999999888873334445789999998665

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=9.1e-05  Score=61.53  Aligned_cols=164  Identities=12%  Similarity=0.126  Sum_probs=111.1

Q ss_pred             CccceEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eEEE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS  105 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s  105 (312)
                      |-..|.+++.+-++ .++.+++. |..++++|+.+-.+++.+...         .+    .+.+. +-.++...  .++.
T Consensus        52 HL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~---------~l----Pg~a~-wv~skGd~~s~IAV  116 (558)
T KOG0882|consen   52 HLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLV---------DL----PGFAE-WVTSKGDKISLIAV  116 (558)
T ss_pred             HHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccc---------cC----CCceE-EecCCCCeeeeEEe
Confidence            66778888888888 78899777 999999999987754332111         11    11111 11222221  4444


Q ss_pred             e--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC----
Q 021484          106 Y--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----  179 (312)
Q Consensus       106 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~----  179 (312)
                      +  .++.+.++|-.....              +....-.-|..+  |..+.+ .+.+..+++....|.|.-|....    
T Consensus       117 s~~~sg~i~VvD~~~d~~--------------q~~~fkklH~sP--V~~i~y-~qa~Ds~vSiD~~gmVEyWs~e~~~qf  179 (558)
T KOG0882|consen  117 SLFKSGKIFVVDGFGDFC--------------QDGYFKKLHFSP--VKKIRY-NQAGDSAVSIDISGMVEYWSAEGPFQF  179 (558)
T ss_pred             ecccCCCcEEECCcCCcC--------------ccceecccccCc--eEEEEe-eccccceeeccccceeEeecCCCcccC
Confidence            4  489999999876410              122222345544  999998 89999999999999999998762    


Q ss_pred             --CeeEEEee---------cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          180 --GKLVRLMV---------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       180 --~~~~~~~~---------~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                        .+....++         -......++.|+|++..+.+-+.|..|++++..++++
T Consensus       180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             ccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence              11111111         1234568899999999999999999999999988753

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.99  E-value=0.00041  Score=58.63  Aligned_cols=113  Identities=18%  Similarity=0.194  Sum_probs=86.7

Q ss_pred             cCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE
Q 021484           85 GKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM  164 (312)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~  164 (312)
                      ....-++..+.|||.|.+|++..-..|.+|.-...                ..+..+. |.   .|..+.| +|.++||.
T Consensus        29 ~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~----------------~~l~~~~-~~---~V~~~~f-SP~~kYL~   87 (561)
T COG5354          29 ESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSK----------------AKLVRFR-HP---DVKYLDF-SPNEKYLV   87 (561)
T ss_pred             cccCcchhheeecCcchheehhhccceEEccccch----------------hheeeee-cC---Cceeccc-Ccccceee
Confidence            33456788999999999999998888999998765                3334443 22   2888998 99999999


Q ss_pred             EeccCc---------------eEEEEeccCCeeEEEeecCccc--eE-EEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          165 SGSDCG---------------HLFIWKKKGGKLVRLMVGDRHV--VN-QLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       165 ~~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~--v~-~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                      +=+..+               .+.+||..++..+..+.....+  .. -+.|+-+.+++|-. ....++|+++
T Consensus        88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~  159 (561)
T COG5354          88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI  159 (561)
T ss_pred             eeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec
Confidence            866544               4999999999999988766554  44 67899888886544 3457899997

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.97  E-value=0.0032  Score=49.09  Aligned_cols=147  Identities=10%  Similarity=0.018  Sum_probs=93.9

Q ss_pred             CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCC
Q 021484           40 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNM  118 (312)
Q Consensus        40 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~  118 (312)
                      ++...+++.|+..+.+..-|..++++..+...                ...|.+-+.- -|.+++.+ -.|.+++.+..+
T Consensus        20 ~dskT~v~igSHs~~~~avd~~sG~~~We~il----------------g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t   82 (354)
T KOG4649|consen   20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL----------------GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT   82 (354)
T ss_pred             cCCceEEEEecCCceEEEecCCCCcEEeehhh----------------CceeeeeeEE-ECCEEEEEEccCcEEEEEecc
Confidence            44447889999999999999999986533211                1222222221 34555554 699999999998


Q ss_pred             CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEE
Q 021484          119 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP  198 (312)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~  198 (312)
                      +                .+...+.....- .+... . ++++..+..|+.|++.+..|.++..++...+-..+...+-+.
T Consensus        83 G----------------s~~w~f~~~~~v-k~~a~-~-d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i  143 (354)
T KOG4649|consen   83 G----------------SQIWNFVILETV-KVRAQ-C-DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVI  143 (354)
T ss_pred             h----------------hheeeeeehhhh-ccceE-E-cCCCceEEEecCCCcEEEecccccceEEecccCCceecccee
Confidence            8                566666543321 12222 3 789999999999999999999998888877644444445556


Q ss_pred             cCCCCeEEEEeCCCcEEEccCCCC
Q 021484          199 HPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       199 ~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                      .|-...|..+...|.+---+.+..
T Consensus       144 ~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  144 APGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             cCCCceEEEEeccceEEEEccCCC
Confidence            663333444444555544444443

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.93  E-value=2.8e-06  Score=73.23  Aligned_cols=163  Identities=17%  Similarity=0.249  Sum_probs=104.7

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEe----CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGG----SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  102 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  102 (312)
                      |+|..+.++++|++-..+.||+|-    .|..+.|||+.++--.       |..   ...+..+......+++|-.+.++
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltv-------Pke---~~~fs~~~l~gqns~cwlrd~kl  168 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTV-------PKE---SPLFSSSTLDGQNSVCWLRDTKL  168 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCC-------Ccc---ccccccccccCccccccccCcch
Confidence            678889999999997557888873    4678999999877310       110   01110112334458888877787


Q ss_pred             EEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEe-ccC
Q 021484          103 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWK-KKG  179 (312)
Q Consensus       103 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd-~~~  179 (312)
                      +.+| ....+.++|++..                 ..+...-..  +.+..+.. +| .++|+++-. ||.|.+|| .+.
T Consensus       169 vlaGm~sr~~~ifdlRqs-----------------~~~~~svnT--k~vqG~tV-dp~~~nY~cs~~-dg~iAiwD~~rn  227 (783)
T KOG1008|consen  169 VLAGMTSRSVHIFDLRQS-----------------LDSVSSVNT--KYVQGITV-DPFSPNYFCSNS-DGDIAIWDTYRN  227 (783)
T ss_pred             hhcccccchhhhhhhhhh-----------------hhhhhhhhh--hhccccee-cCCCCCceeccc-cCceeeccchhh
Confidence            7777 4789999999853                 111111122  23566666 66 778877655 99999999 333


Q ss_pred             C-eeEEEeecCc----cceEEEEEcCCCCe-EEEEeC-CCcEEEccCC
Q 021484          180 G-KLVRLMVGDR----HVVNQLEPHPHIPM-FATCGI-EKTVKLWAPM  220 (312)
Q Consensus       180 ~-~~~~~~~~~~----~~v~~~~~~p~~~~-l~t~~~-d~~i~iwd~~  220 (312)
                      - .++..+...+    ..+..++|+|...- +++... .++|+++++.
T Consensus       228 ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  228 IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            2 2333332112    24889999998755 666664 4789999976

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.93  E-value=0.00066  Score=58.46  Aligned_cols=157  Identities=10%  Similarity=0.017  Sum_probs=92.7

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCC---CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      ...+..-+|+|++..+....-..   ..+.++++.+++-.       .+..         ....-...+|+|+|+.|+-+
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-------~i~~---------~~g~~~~P~fspDG~~l~f~  255 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-------VILN---------FNGNNGAPAFSPDGSKLAFS  255 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-------eeec---------cCCccCCccCCCCCCEEEEE
Confidence            34567788999985444443222   35888999887621       1111         12333456899999866654


Q ss_pred             --cCCc--EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEeccC
Q 021484          107 --NDEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKG  179 (312)
Q Consensus       107 --~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~~  179 (312)
                        .|+.  |+++|+.++                . ...+......  -..-.| +|+|++++-.+. .|  .|.+.++..
T Consensus       256 ~~rdg~~~iy~~dl~~~----------------~-~~~Lt~~~gi--~~~Ps~-spdG~~ivf~Sdr~G~p~I~~~~~~g  315 (425)
T COG0823         256 SSRDGSPDIYLMDLDGK----------------N-LPRLTNGFGI--NTSPSW-SPDGSKIVFTSDRGGRPQIYLYDLEG  315 (425)
T ss_pred             ECCCCCccEEEEcCCCC----------------c-ceecccCCcc--ccCccC-CCCCCEEEEEeCCCCCcceEEECCCC
Confidence              3654  677787765                2 2223322221  224556 999999876554 44  466677775


Q ss_pred             CeeEEEeecCccceEEEEEcCCCCeEEEEeC-CCc--EEEccCCCCC
Q 021484          180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EKT--VKLWAPMPTD  223 (312)
Q Consensus       180 ~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~-d~~--i~iwd~~~~~  223 (312)
                      +.. ..+......-..-.|+|+|++++..+. +|.  |.+.++.++.
T Consensus       316 ~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         316 SQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             Cce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            554 333323322236789999999877764 344  6666665544

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.93  E-value=0.003  Score=52.82  Aligned_cols=184  Identities=10%  Similarity=0.073  Sum_probs=106.5

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCC---CCcEEEEEeC---------C-CeEEEEEccCCeecC
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR---NPNYFAVGGS---------D-EYARVYDIRKCHWYS   67 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---~~~~l~~~~~---------d-g~i~iwd~~~~~~~~   67 (312)
                      |++.|..+......+......       +...+..+.+..+   ...+|++|+.         . |.|.++++.....  
T Consensus         4 i~l~d~~~~~~~~~~~l~~~E-------~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~--   74 (321)
T PF03178_consen    4 IRLVDPTTFEVLDSFELEPNE-------HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE--   74 (321)
T ss_dssp             EEEEETTTSSEEEEEEEETTE-------EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----
T ss_pred             EEEEeCCCCeEEEEEECCCCc-------eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc--
Confidence            466676665544444443322       2223334444432   1367877753         2 8999999987400  


Q ss_pred             CCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC
Q 021484           68 PISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS  147 (312)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (312)
                         ....+   ..... ....++|++++--  +..|+.+..+.|++|++...                +.+.....+...
T Consensus        75 ---~~~~l---~~i~~-~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~----------------~~l~~~~~~~~~  129 (321)
T PF03178_consen   75 ---NNFKL---KLIHS-TEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNS----------------KTLLKKAFYDSP  129 (321)
T ss_dssp             ------EE---EEEEE-EEESS-EEEEEEE--TTEEEEEETTEEEEEEEETT----------------SSEEEEEEE-BS
T ss_pred             ---cceEE---EEEEE-EeecCcceEhhhh--CCEEEEeecCEEEEEEccCc----------------ccchhhheecce
Confidence               00001   11111 2336778888766  33477777899999999876                312222222222


Q ss_pred             ceeeEEEEecCCCCEEEEeccCceEEEEeccC-CeeEEEee--cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          148 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       148 ~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~--~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                      ..+.++..   .+++++.|.....+.++.++. ++.+..+.  .....++++.|-++++.++.+..+|.|.++....
T Consensus       130 ~~i~sl~~---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  130 FYITSLSV---FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             SSEEEEEE---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEEEEEec---cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            24777765   367999999888888875543 33333332  2345688888987777899999999999998764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.87  E-value=0.0047  Score=49.05  Aligned_cols=167  Identities=13%  Similarity=0.142  Sum_probs=94.0

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      ...+..++|+|+...++++....+.|..++.. ++++..+            .+ .+ ....-.|++..++.++++. .+
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i------------~l-~g-~~D~EgI~y~g~~~~vl~~Er~   85 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI------------PL-DG-FGDYEGITYLGNGRYVLSEERD   85 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE------------E--SS--SSEEEEEE-STTEEEEEETTT
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE------------eC-CC-CCCceeEEEECCCEEEEEEcCC
Confidence            44699999999875788888899999888875 5532111            11 22 3456788888888888777 49


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe--cc-cCCceeeEEEEecCCCCEEEEeccCceEEEEeccC---Cee
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---GKL  182 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~---~~~  182 (312)
                      +.+.++++......    +..      ...+.+.  .. ....-+-.++| ++.++.|+.+-+..-..+|.++.   ...
T Consensus        86 ~~L~~~~~~~~~~~----~~~------~~~~~~~l~~~~~~N~G~EGla~-D~~~~~L~v~kE~~P~~l~~~~~~~~~~~  154 (248)
T PF06977_consen   86 QRLYIFTIDDDTTS----LDR------ADVQKISLGFPNKGNKGFEGLAY-DPKTNRLFVAKERKPKRLYEVNGFPGGFD  154 (248)
T ss_dssp             TEEEEEEE----TT------E------EEEEEEE---S---SS--EEEEE-ETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred             CcEEEEEEeccccc----cch------hhceEEecccccCCCcceEEEEE-cCCCCEEEEEeCCCChhhEEEccccCccc
Confidence            99999998543100    000      0111121  11 11123889999 88888888887777677776653   222


Q ss_pred             EEEe--e------cCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCC
Q 021484          183 VRLM--V------GDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       183 ~~~~--~------~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~  222 (312)
                      +...  .      .....+.+++++|.... ++.......|-.+|..+.
T Consensus       155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~  203 (248)
T PF06977_consen  155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR  203 (248)
T ss_dssp             -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--
T ss_pred             eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC
Confidence            2111  1      12345788999997655 566667788888985554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.82  E-value=0.00043  Score=59.60  Aligned_cols=159  Identities=12%  Similarity=0.122  Sum_probs=90.6

Q ss_pred             eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEE--EEccCCeecCCCCCCCCccccc
Q 021484            2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARV--YDIRKCHWYSPISSDTPVDTFC   79 (312)
Q Consensus         2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~   79 (312)
                      .++|+.+.+...+...            ...-..-+|+|+|..++++...||...|  +|+.+++..             
T Consensus       221 ~~~~l~~g~~~~i~~~------------~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-------------  275 (425)
T COG0823         221 YYLDLNTGKRPVILNF------------NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-------------  275 (425)
T ss_pred             EEEeccCCccceeecc------------CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-------------
Confidence            3556665554444442            2233457899999777777778877555  456555411             


Q ss_pred             ccccccCCCccEEEEEEccCCCeEEEec--CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE
Q 021484           80 PRHLIGKNNIHITGLAYSNTSELLISYN--DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  155 (312)
Q Consensus        80 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~--d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  155 (312)
                       . + ..-.+.-..-.|+|+|+.++-.+  .|  .|++++.+..                .. ..+......  -..-.|
T Consensus       276 -~-L-t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~----------------~~-~riT~~~~~--~~~p~~  333 (425)
T COG0823         276 -R-L-TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS----------------QV-TRLTFSGGG--NSNPVW  333 (425)
T ss_pred             -e-c-ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC----------------ce-eEeeccCCC--CcCccC
Confidence             1 1 11122222568999999666542  44  4666677664                22 333333222  114556


Q ss_pred             ecCCCCEEEEecc-Cce--EEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021484          156 FGPNDEYVMSGSD-CGH--LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       156 ~s~~~~~l~~~~~-dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~  209 (312)
                       +|+|++|+..+. +|.  |.+.|+.++..++.+. +........|.|+++.+...+
T Consensus       334 -SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         334 -SPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             -CCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence             999999887664 344  6667776655444333 333444567888888765544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.82  E-value=0.0018  Score=55.87  Aligned_cols=214  Identities=7%  Similarity=-0.020  Sum_probs=113.6

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS  123 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~  123 (312)
                      ..++.++.++.++.+|..+++.....+...++           ...++    . .++.+++...++.++-+|..++    
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-----------~ssP~----v-~~~~v~v~~~~g~l~ald~~tG----  180 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA-----------LSRPV----V-SDGLVLVHTSNGMLQALNESDG----  180 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccCCCce-----------ecCCE----E-ECCEEEEECCCCEEEEEEccCC----
Confidence            35677788999999999999865443211110           01111    1 1445555557899999999887    


Q ss_pred             CCcCCcccccCCCCCceEecccCCce---eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCcc-------ce
Q 021484          124 PLSLSPEDLQKREEPQVYSGHRNSQT---VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-------VV  193 (312)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~v  193 (312)
                                  +.+..+........   ..+-..   .+..++.++.+|.+..+|..+|+.+-.......       ..
T Consensus       181 ------------~~~W~~~~~~~~~~~~~~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~  245 (394)
T PRK11138        181 ------------AVKWTVNLDVPSLTLRGESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL  245 (394)
T ss_pred             ------------CEeeeecCCCCcccccCCCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence                        44444432211000   001111   133566778889999999998876544321100       01


Q ss_pred             EEEEEcC--CCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCccceeE
Q 021484          194 NQLEPHP--HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE  271 (312)
Q Consensus       194 ~~~~~~p--~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~  271 (312)
                      ..+.-+|  .+..++.++.+|.+..+|+.+++..=-... .....   ....+..++.++.++.+..++..++. ..|..
T Consensus       246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~~~~~---~~~~~~~vy~~~~~g~l~ald~~tG~-~~W~~  320 (394)
T PRK11138        246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-GSVND---FAVDGGRIYLVDQNDRVYALDTRGGV-ELWSQ  320 (394)
T ss_pred             cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-CCccC---cEEECCEEEEEcCCCeEEEEECCCCc-EEEcc
Confidence            1111222  245566677789999999888763100000 00000   11234566667778888888765542 22321


Q ss_pred             ee----------cCCCccCCCCCCCeEEEeecCCCC
Q 021484          272 RR----------YNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       272 ~~----------~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      ..          .....+...+.+|.++++|..+|.
T Consensus       321 ~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        321 SDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR  356 (394)
T ss_pred             cccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCC
Confidence            10          012223334556777777776664

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.81  E-value=0.002  Score=43.54  Aligned_cols=102  Identities=15%  Similarity=0.177  Sum_probs=64.6

Q ss_pred             eEEEEEc---CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484           33 LNAIVID---PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  109 (312)
Q Consensus        33 v~~~~~~---p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  109 (312)
                      |++|++.   -+|.+.|++|+.|..||+|+-..--                ..  ......|++++-...+++..+..+|
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~----------------~E--i~e~~~v~~L~~~~~~~F~Y~l~NG   63 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV----------------AE--ITETDKVTSLCSLGGGRFAYALANG   63 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE----------------EE--EecccceEEEEEcCCCEEEEEecCC
Confidence            4555554   4566899999999999999865321                11  1224667888777765555555899


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC---CEEEEeccCceEE
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---EYVMSGSDCGHLF  173 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~---~~l~~~~~dg~v~  173 (312)
                      +|-+|+-..                  .+...+...   .+.++++++.++   ..|++|-.+|.|-
T Consensus        64 TVGvY~~~~------------------RlWRiKSK~---~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   64 TVGVYDRSQ------------------RLWRIKSKN---QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEEeCcc------------------eeeeeccCC---CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            999998643                  222222222   266666645543   3588888888774

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.78  E-value=0.0053  Score=52.95  Aligned_cols=225  Identities=12%  Similarity=0.089  Sum_probs=118.8

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCC-CccEE-EEEEccCCCeEEEecCCcEEEEEcCCCcC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN-NIHIT-GLAYSNTSELLISYNDELVYLFEKNMGLG  121 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~-~~~~~~~~~~l~s~~d~~i~iwd~~~~~~  121 (312)
                      ..+++++.++.+..+|..+++.+...+.......+      ... ...+. .+.. .++++++.+.++.++-+|..++  
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~------~~~~~~~~~~~~~v-~~~~v~v~~~~g~l~ald~~tG--  140 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWF------SKNKSALLSGGVTV-AGGKVYIGSEKGQVYALNAEDG--  140 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCCCccccc------ccccccccccccEE-ECCEEEEEcCCCEEEEEECCCC--
Confidence            46777788899999999999865443222110000      000 00000 1111 1344555567899999999888  


Q ss_pred             CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE-EEEEcC
Q 021484          122 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-QLEPHP  200 (312)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~p  200 (312)
                                    +.+.........  ......   .+..++.++.++.|..+|..+|+.+-.......... ...-+|
T Consensus       141 --------------~~~W~~~~~~~~--~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP  201 (394)
T PRK11138        141 --------------EVAWQTKVAGEA--LSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP  201 (394)
T ss_pred             --------------CCcccccCCCce--ecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC
Confidence                          555544332211  111112   245677788899999999999998766643211100 000112


Q ss_pred             --CCCeEEEEeCCCcEEEccCCCCCCC-C--CCCCh--hhh--hhhhccCC--CCceeEEecCCceEEEEEecccCccce
Q 021484          201 --HIPMFATCGIEKTVKLWAPMPTDFP-P--LPDNA--EKI--MKANKQGR--EDHSRITLTPDVIMHVLRLQRRQTLAY  269 (312)
Q Consensus       201 --~~~~l~t~~~d~~i~iwd~~~~~~~-~--~~~~~--~~~--~~~~~~~~--~~~~l~s~~~d~~i~i~~~~~~~~~~~  269 (312)
                        .+..++.++.++.+...|..+++.. .  +....  ...  +......+  .+..++.++.++.+..+|..++. ..|
T Consensus       202 ~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~-~~W  280 (394)
T PRK11138        202 ATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ-IVW  280 (394)
T ss_pred             EEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC-EEE
Confidence              1234666677888988888877531 1  10000  000  00000111  24566677788888888877663 333


Q ss_pred             eEeec-------CCCccCCCCCCCeEEEeecCCCC
Q 021484          270 RERRY-------NAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       270 ~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      .....       ....+.....++.++.++..+|.
T Consensus       281 ~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~  315 (394)
T PRK11138        281 KREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGV  315 (394)
T ss_pred             eecCCCccCcEEECCEEEEEcCCCeEEEEECCCCc
Confidence            31111       11222233456778888877764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.78  E-value=0.0015  Score=55.65  Aligned_cols=213  Identities=12%  Similarity=0.167  Sum_probs=111.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecC------CCC----------------------CCCCccccccccc
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS------PIS----------------------SDTPVDTFCPRHL   83 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~------~~~----------------------~~~~~~~~~~~~~   83 (312)
                      .|+.+.|.++. .-|++|...|.|.+|.....+-..      ..+                      .+.....|.+..+
T Consensus         3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            58999999987 689999999999999886543221      000                      0001123445555


Q ss_pred             ccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceE------ecccCCceeeEEEEe
Q 021484           84 IGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY------SGHRNSQTVKGVNFF  156 (312)
Q Consensus        84 ~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~v~~~  156 (312)
                      +....++|++++.|.-| ++|.+ .+|.+.|.|++..                ..+..-      ..+.....++++.|.
T Consensus        82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGP----------------avI~~~~i~~~~~~~~~~~~vt~ieF~  144 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGP----------------AVIYNENIRESFLSKSSSSYVTSIEFS  144 (395)
T ss_dssp             E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTT----------------EEEEEEEGGG--T-SS----EEEEEEE
T ss_pred             eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCC----------------eEEeeccccccccccccccCeeEEEEE
Confidence            56668999999997555 55554 7999999999765                222111      111122347777772


Q ss_pred             ----cCCC---CEEEEeccCceEEEEeccC---Cee----EEEeecCccceEEEE-EcCC-C------------------
Q 021484          157 ----GPND---EYVMSGSDCGHLFIWKKKG---GKL----VRLMVGDRHVVNQLE-PHPH-I------------------  202 (312)
Q Consensus       157 ----s~~~---~~l~~~~~dg~v~iwd~~~---~~~----~~~~~~~~~~v~~~~-~~p~-~------------------  202 (312)
                          ..++   -.|++|+..|.+.+|.+..   +..    ......+.++|..+. ++.+ |                  
T Consensus       145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~  224 (395)
T PF08596_consen  145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS  224 (395)
T ss_dssp             EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred             EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence                2222   4788999999999998642   211    111123445555544 3211 1                  


Q ss_pred             -CeEEEEeCCCcEEEccCCCCCC--CCCCCChhhhhhhhcc-----CCCCceeEEecCCceEEEEEeccc
Q 021484          203 -PMFATCGIEKTVKLWAPMPTDF--PPLPDNAEKIMKANKQ-----GREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       203 -~~l~t~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                       +.++....+..+|++.+.+.+.  +.+. ... ......+     ...+..|+....+|.++++.+..-
T Consensus       225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~-~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L  292 (395)
T PF08596_consen  225 IPGYVVVVSESDIRVFKPPKSKGAHKSFD-DPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL  292 (395)
T ss_dssp             --EEEEEE-SSEEEEE-TT---EEEEE-S-S-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred             cCcEEEEEcccceEEEeCCCCcccceeec-ccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence             2244445588999999887653  2221 111 1111111     224567889999999999987654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.78  E-value=0.00048  Score=60.54  Aligned_cols=120  Identities=17%  Similarity=0.170  Sum_probs=83.8

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  107 (312)
                      |+..|.=-+++..+ .+++.|++-|.+++|+-..+++....              ..+....+..+..+++..++|.+ .
T Consensus        32 ~~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~~~~--------------~~~~~~~~~~~~vs~~e~lvAagt~   96 (726)
T KOG3621|consen   32 FPARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMRKLK--------------NEGATGITCVRSVSSVEYLVAAGTA   96 (726)
T ss_pred             CcceEEEEEeecCC-ceEEEecccceEEEEecCchhhhccc--------------ccCccceEEEEEecchhHhhhhhcC
Confidence            44555555566666 79999999999999998877643211              02234456667778887777776 5


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe---cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG  179 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~  179 (312)
                      .|.|.++.+.....+             .....-.   .|..  .|++++| ++++..+++|...|+|..-.+.+
T Consensus        97 ~g~V~v~ql~~~~p~-------------~~~~~t~~d~~~~~--rVTal~W-s~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   97 SGRVSVFQLNKELPR-------------DLDYVTPCDKSHKC--RVTALEW-SKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CceEEeehhhccCCC-------------cceeeccccccCCc--eEEEEEe-cccccEEeecCCCceEEEEEech
Confidence            889999988764211             1111111   1343  4999999 99999999999999999887766

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.75  E-value=0.00025  Score=62.20  Aligned_cols=117  Identities=14%  Similarity=0.069  Sum_probs=83.9

Q ss_pred             CCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021484           87 NNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  165 (312)
Q Consensus        87 ~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~  165 (312)
                      +...+.--++...+++++.| +-|.+++|+...+                 ..+.++.......+..++. +++..++|.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~-----------------~~~~~~~~~~~~~~~~~~v-s~~e~lvAa   93 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG-----------------EMRKLKNEGATGITCVRSV-SSVEYLVAA   93 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCch-----------------hhhcccccCccceEEEEEe-cchhHhhhh
Confidence            44556666777788888887 6999999998876                 2222222111122344444 888999999


Q ss_pred             eccCceEEEEeccCCeeE-----EEe-ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          166 GSDCGHLFIWKKKGGKLV-----RLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       166 ~~~dg~v~iwd~~~~~~~-----~~~-~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                      |+..|.|.++-+....+-     ... +.|...|++++|++++..+.+|...|+|.+-.+..
T Consensus        94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            999999999987754331     111 24678999999999999999999999998876655

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.67  E-value=0.0043  Score=55.07  Aligned_cols=109  Identities=8%  Similarity=0.011  Sum_probs=73.3

Q ss_pred             EccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEE
Q 021484           96 YSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFI  174 (312)
Q Consensus        96 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~i  174 (312)
                      +.++|++... .++.|.+.|..+...           ...+.+..+....   ....+++ +|+|+++++++ .+.+|.|
T Consensus       284 ~vkdGK~~~V-~gn~V~VID~~t~~~-----------~~~~v~~yIPVGK---sPHGV~v-SPDGkylyVanklS~tVSV  347 (635)
T PRK02888        284 AVKAGKFKTI-GGSKVPVVDGRKAAN-----------AGSALTRYVPVPK---NPHGVNT-SPDGKYFIANGKLSPTVTV  347 (635)
T ss_pred             hhhCCCEEEE-CCCEEEEEECCcccc-----------CCcceEEEEECCC---CccceEE-CCCCCEEEEeCCCCCcEEE
Confidence            3456764443 467899999876100           0002333333222   2788998 99999987665 5899999


Q ss_pred             EeccCCee------------EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          175 WKKKGGKL------------VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       175 wd~~~~~~------------~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                      .|+.+.+.            +.+.....++ ...+|.++|....|...|..|..|++..
T Consensus       348 IDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        348 IDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence            99887542            3344333333 4678999998888888999999999765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.0043  Score=56.07  Aligned_cols=132  Identities=14%  Similarity=0.155  Sum_probs=88.3

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe-EEEec
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LISYN  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~  107 (312)
                      .+.++.+++.+.+- ..+++|-.+|.|..+.-+-.+-.       .    ....+.....++|+.+++..+++. +..+.
T Consensus       124 ~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDr-------g----sr~~~~~~~~~pITgL~~~~d~~s~lFv~T  191 (933)
T KOG2114|consen  124 NPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDR-------G----SRQDYSHRGKEPITGLALRSDGKSVLFVAT  191 (933)
T ss_pred             CCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhcc-------c----cceeeeccCCCCceeeEEecCCceeEEEEe
Confidence            46789999999986 89999999999998864311100       0    011111334689999999999974 55556


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCC-CCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      -..|.+|.+.+.                . ..+.+..+...  +.|..+ ++....+++++ ...|.+|+....++...+
T Consensus       192 t~~V~~y~l~gr----------------~p~~~~ld~~G~~--lnCss~-~~~t~qfIca~-~e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  192 TEQVMLYSLSGR----------------TPSLKVLDNNGIS--LNCSSF-SDGTYQFICAG-SEFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             cceeEEEEecCC----------------CcceeeeccCCcc--ceeeec-CCCCccEEEec-CceEEEEcCCCcceeeee
Confidence            778999998754                2 23445555544  888888 55444344443 457999998877777777


Q ss_pred             e-cCccc
Q 021484          187 V-GDRHV  192 (312)
Q Consensus       187 ~-~~~~~  192 (312)
                      . +|...
T Consensus       252 ~~g~kk~  258 (933)
T KOG2114|consen  252 EVGEKKE  258 (933)
T ss_pred             cCCCeEE
Confidence            6 66543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.00024  Score=61.55  Aligned_cols=72  Identities=15%  Similarity=0.183  Sum_probs=65.5

Q ss_pred             eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE-EEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-QLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      +..+.| +|.-..+|.+..+|.|.+..++ .+.+-++.-|...++ +++|.|+|+.+|.|-.||+|++-|..++.
T Consensus        23 i~~~ew-nP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   23 IKRIEW-NPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             eEEEEE-cCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            778888 9999999999999999999988 777888887777777 99999999999999999999999998875

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.64  E-value=0.00016  Score=54.99  Aligned_cols=64  Identities=11%  Similarity=0.113  Sum_probs=48.3

Q ss_pred             CCCEEEEeccCceEEEEeccCCeeEEEeecCc-cceEEEEEcCCCCeEEEE--eCCCcEEEccCCCC
Q 021484          159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATC--GIEKTVKLWAPMPT  222 (312)
Q Consensus       159 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~t~--~~d~~i~iwd~~~~  222 (312)
                      ++.+..+++.+|.|+.|++...+.+.....|. .++.....+-.++.++.+  |.|..++.|++...
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            45588899999999999999988887777777 566666666666666666  77777777776653

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.0003  Score=57.72  Aligned_cols=84  Identities=11%  Similarity=0.054  Sum_probs=68.0

Q ss_pred             CCCceEecccCCceeeEEEEecCCCC-EEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCc
Q 021484          136 EEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKT  213 (312)
Q Consensus       136 ~~~~~~~~~~~~~~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~  213 (312)
                      +..+.+.++..  .|.+++| +|..+ ++..++.+..|+|.|+++...+..+..+ ..+.+++|.-+... +..|-..|.
T Consensus       184 kssq~lp~~g~--~Irdlaf-Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  184 KSSQILPGEGS--FIRDLAF-SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM  259 (463)
T ss_pred             chhhcccccch--hhhhhcc-CccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence            34444555554  4999999 77766 7889999999999999999888888877 68999999987765 666778999


Q ss_pred             EEEccCCCCC
Q 021484          214 VKLWAPMPTD  223 (312)
Q Consensus       214 i~iwd~~~~~  223 (312)
                      |.|||++..+
T Consensus       260 VlvyD~R~~~  269 (463)
T KOG1645|consen  260 VLVYDMRQPE  269 (463)
T ss_pred             EEEEEccCCC
Confidence            9999988543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.00017  Score=64.74  Aligned_cols=108  Identities=14%  Similarity=0.132  Sum_probs=83.7

Q ss_pred             EEEEEccCCCeEEEe-----cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe
Q 021484           92 TGLAYSNTSELLISY-----NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  166 (312)
Q Consensus        92 ~~~~~~~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~  166 (312)
                      +-..|+|...+++.+     ..|.|.||-- ++                ++.+... .+  -.+++++| +|..-.|+.|
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tG----------------EPqr~Vt-~P--~hatSLCW-Hpe~~vLa~g   77 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TG----------------EPQRDVT-YP--VHATSLCW-HPEEFVLAQG   77 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEec-CC----------------CCCcccc-cc--eehhhhcc-ChHHHHHhhc
Confidence            345789988766653     2788888843 33                2322222 11  12678999 8988889999


Q ss_pred             ccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484          167 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  220 (312)
Q Consensus       167 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  220 (312)
                      -..|.+.+|...+.+.-.....|..+|..+.|||+|..++|+..-|.|.+|...
T Consensus        78 we~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   78 WEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            999999999998877766667899999999999999999999999999999865

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.54  E-value=0.00087  Score=60.41  Aligned_cols=72  Identities=17%  Similarity=0.272  Sum_probs=60.1

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      +-.+++++|+|.. -.|+.|-.-|.+.+|...+.+               .......|..+|..+.||++|..+.++ .-
T Consensus        59 P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e---------------~htv~~th~a~i~~l~wS~~G~~l~t~d~~  122 (1416)
T KOG3617|consen   59 PVHATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTE---------------THTVVETHPAPIQGLDWSHDGTVLMTLDNP  122 (1416)
T ss_pred             ceehhhhccChHH-HHHhhccccceeEEEecCCce---------------eeeeccCCCCCceeEEecCCCCeEEEcCCC
Confidence            4567789999987 788889899999999988765               223336789999999999999999998 58


Q ss_pred             CcEEEEEcC
Q 021484          109 ELVYLFEKN  117 (312)
Q Consensus       109 ~~i~iwd~~  117 (312)
                      |.|.+|...
T Consensus       123 g~v~lwr~d  131 (1416)
T KOG3617|consen  123 GSVHLWRYD  131 (1416)
T ss_pred             ceeEEEEee
Confidence            999999875

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.00078  Score=58.58  Aligned_cols=93  Identities=10%  Similarity=0.115  Sum_probs=73.1

Q ss_pred             CccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceee-EEEEecCCCCEEEE
Q 021484           88 NIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK-GVNFFGPNDEYVMS  165 (312)
Q Consensus        88 ~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~s~~~~~l~~  165 (312)
                      ...+.-+.|+|.-.++|.. .+|.|.+..+. .                +.+.++..+...  ++ +++| .|+|+.|+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~----------------qRlwtip~p~~~--v~~sL~W-~~DGkllaV   79 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-W----------------QRLWTIPIPGEN--VTASLCW-RPDGKLLAV   79 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-c----------------ceeEeccCCCCc--cceeeee-cCCCCEEEE
Confidence            4568889999999999997 59999988886 3                466666655433  55 9999 999999999


Q ss_pred             eccCceEEEEeccCCeeEEEee-cCccceEEEEEcC
Q 021484          166 GSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHP  200 (312)
Q Consensus       166 ~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p  200 (312)
                      |-.||+|++.|..++..+.... .-...|.++.|.|
T Consensus        80 g~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   80 GFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            9999999999999988776632 2335677888863

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.43  E-value=0.0091  Score=54.97  Aligned_cols=71  Identities=14%  Similarity=0.228  Sum_probs=56.9

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  109 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  109 (312)
                      ....+|++-+.+|  .||+|+.+|.||+||-- +.              ..++.+.+-..+|..|..+.||+++++..+.
T Consensus       577 ~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~--------------~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  577 KNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GK--------------RAKTALPGLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             CCCceEEEecCCc--eEEEEeCCCcEEeeccc-ch--------------hhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence            4457788888877  89999999999999943 32              2344445668999999999999998888888


Q ss_pred             cEEEEEcC
Q 021484          110 LVYLFEKN  117 (312)
Q Consensus       110 ~i~iwd~~  117 (312)
                      .|.+++..
T Consensus       640 yLlLi~t~  647 (794)
T PF08553_consen  640 YLLLIDTL  647 (794)
T ss_pred             eEEEEEEe
Confidence            89888874

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.43  E-value=0.0041  Score=57.12  Aligned_cols=143  Identities=8%  Similarity=0.132  Sum_probs=89.0

Q ss_pred             cEEEEE-eCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC--------CCeEEEecCCcEEEE
Q 021484           44 NYFAVG-GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--------SELLISYNDELVYLF  114 (312)
Q Consensus        44 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~l~s~~d~~i~iw  114 (312)
                      ++|+.. .....|+-.|+..|+++..+.....              .+|..+  .|+        ...++.-+++.++.|
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~--------------~~v~~~--~p~~K~aqlt~e~tflGls~n~lfri  557 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDD--------------IPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRI  557 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCC--------------cceeEe--cccccccccCCCceEEEECCCceEEe
Confidence            444443 4567899999999986654432221              113332  222        234555589999999


Q ss_pred             EcCCCcCCCCCcCCcccccCCCCCc-eEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccce
Q 021484          115 EKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV  193 (312)
Q Consensus       115 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v  193 (312)
                      |.+-..              .+++. ............|++-  ....+||+|+.+|.|++||--..+....+.+-..+|
T Consensus       558 DpR~~~--------------~k~v~~~~k~Y~~~~~Fs~~aT--t~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI  621 (794)
T PF08553_consen  558 DPRLSG--------------NKLVDSQSKQYSSKNNFSCFAT--TEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI  621 (794)
T ss_pred             ccCCCC--------------CceeeccccccccCCCceEEEe--cCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence            998531              01111 0111111122667764  455578999999999999954334445566777899


Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          194 NQLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       194 ~~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                      ..|..+.+|+++++.+ +..|-|++.
T Consensus       622 ~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  622 IGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             eEEEecCCCcEEEEee-cceEEEEEE
Confidence            9999999999966655 567777774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=97.39  E-value=0.00051  Score=36.37  Aligned_cols=37  Identities=32%  Similarity=0.665  Sum_probs=30.9

Q ss_pred             CCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEe
Q 021484          137 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK  176 (312)
Q Consensus       137 ~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd  176 (312)
                      ....+..|...  +.++.| .+.++++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGP--VTSVAF-SPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCc--eeEEEE-CCCCCEEEEecCCCeEEEcC
Confidence            44556667655  999999 88889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.35  E-value=0.00027  Score=63.83  Aligned_cols=126  Identities=16%  Similarity=0.135  Sum_probs=88.1

Q ss_pred             CCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC--
Q 021484          134 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--  211 (312)
Q Consensus       134 ~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d--  211 (312)
                      .++..+.|..+...  .++++| +...+.|+.|+..|.|++|+..+|........|..+|+.+.-+.+|..+++.+.-  
T Consensus      1090 RFr~w~~frd~~~~--fTc~af-s~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETAL--FTCIAF-SGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred             hcccchhhhccccc--eeeEEe-ecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC
Confidence            34556677777755  899999 8999999999999999999999999999999999999999999999986666532  


Q ss_pred             CcEEEccCCCC--CCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021484          212 KTVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       212 ~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      --..+|++..-  ..+++.+     -..+.++......+.++......++|+++.+.+
T Consensus      1167 PlsaLW~~~s~~~~~Hsf~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFDE-----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred             chHHHhccccccCccccccc-----cceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence            25788997652  1233321     112222222223334444455667777665443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.33  E-value=0.036  Score=47.98  Aligned_cols=62  Identities=6%  Similarity=-0.010  Sum_probs=40.7

Q ss_pred             cCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          157 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       157 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                      +.+....+....++.+.+.+....+.   +. ..+++..++.||+++++|.-..+|.+.+.+..-.
T Consensus       187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  187 SSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             ecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence            44445545555556666444332211   22 2368999999999999999999999988875443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.31  E-value=0.022  Score=50.76  Aligned_cols=92  Identities=12%  Similarity=0.063  Sum_probs=58.8

Q ss_pred             CceEEEEeccC-----CeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCCC-------------CCCCC
Q 021484          169 CGHLFIWKKKG-----GKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDF-------------PPLPD  229 (312)
Q Consensus       169 dg~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~-------------~~~~~  229 (312)
                      ++.|.+.|..+     .+.+..+.. ......+.++|+|+++++++ .+.+|.|.|+.+.+.             ....-
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            35678888776     344444443 34567899999999965555 789999999887541             00100


Q ss_pred             ChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          230 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      ...++ . ..+..++....|.--|+.+-.|++..
T Consensus       374 GlGPL-H-TaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 GLGPL-H-TAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCcc-e-EEECCCCCEEEeEeecceeEEEehHH
Confidence            01111 1 11344566778888899999999875

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.30  E-value=0.044  Score=45.20  Aligned_cols=111  Identities=13%  Similarity=0.104  Sum_probs=67.8

Q ss_pred             CCCccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE
Q 021484           86 KNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  163 (312)
Q Consensus        86 ~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l  163 (312)
                      .+-.....|+|||+++.|..+  ..+.|+-|++.........          +....+... .....-.++. ..+|.+.
T Consensus       160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~----------~~~~~~~~~-~~G~PDG~~v-DadG~lw  227 (307)
T COG3386         160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG----------RRGFVDFDE-EPGLPDGMAV-DADGNLW  227 (307)
T ss_pred             CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC----------cceEEEccC-CCCCCCceEE-eCCCCEE
Confidence            334455689999999866555  3688888887531111000          111111111 1122445666 7788887


Q ss_pred             EEeccCc-eEEEEeccCCeeEEEeecCccceEEEEE-cCCCCeEEEEe
Q 021484          164 MSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEP-HPHIPMFATCG  209 (312)
Q Consensus       164 ~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~~~~-~p~~~~l~t~~  209 (312)
                      +++...| .|.+|+.. ++++..+......+++++| .|+.+.|...+
T Consensus       228 ~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         228 VAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             EecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            6555554 99999998 9999888877677888888 45555544333

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.30  E-value=0.001  Score=37.54  Aligned_cols=33  Identities=21%  Similarity=0.356  Sum_probs=29.3

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH   64 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~   64 (312)
                      +.+|.+++|+|.. .++|.|+.+|.|.+|.+ +++
T Consensus        11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCc
Confidence            4579999999999 79999999999999999 443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.29  E-value=0.025  Score=38.38  Aligned_cols=100  Identities=13%  Similarity=0.132  Sum_probs=61.5

Q ss_pred             EEEEEE---ccCCC--eEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021484           91 ITGLAY---SNTSE--LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  165 (312)
Q Consensus        91 i~~~~~---~~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~  165 (312)
                      |+++++   ..+|+  +|+.+.|..|++|+-.                  ..+..+....   .|++++-  ..+..++.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~------------------e~~~Ei~e~~---~v~~L~~--~~~~~F~Y   58 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD------------------EIVAEITETD---KVTSLCS--LGGGRFAY   58 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC------------------cEEEEEeccc---ceEEEEE--cCCCEEEE
Confidence            445554   44553  5555679999999864                  2444444332   2788875  34477899


Q ss_pred             eccCceEEEEeccCCeeEEEeecCccceEEEEEcC-CC---CeEEEEeCCCcEEE
Q 021484          166 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP-HI---PMFATCGIEKTVKL  216 (312)
Q Consensus       166 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p-~~---~~l~t~~~d~~i~i  216 (312)
                      +..+|+|-+|+-.  +.+-..+.. ..+.++.+.. ++   +.|++|-.+|.|-+
T Consensus        59 ~l~NGTVGvY~~~--~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   59 ALANGTVGVYDRS--QRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             EecCCEEEEEeCc--ceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            9999999999863  223333322 3355665543 32   24888888887743

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.1  Score=44.71  Aligned_cols=157  Identities=11%  Similarity=0.115  Sum_probs=103.1

Q ss_pred             ceEEEEEcCCCCcEEEEEe--CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--c
Q 021484           32 RLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--N  107 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~  107 (312)
                      ....++++|++..+.++-.  .++++.+.|..+.++...              ...+. .+ ..++++|+|..+...  .
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~--------------~~vG~-~P-~~~a~~p~g~~vyv~~~~  180 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT--------------IPVGN-TP-TGVAVDPDGNKVYVTNSD  180 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE--------------EecCC-Cc-ceEEECCCCCeEEEEecC
Confidence            3567999999854444444  368888888887763211              11221 22 789999999855554  4


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCc-----eEecccCCceeeEEEEecCCCCEEEEeccC---ceEEEEeccC
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-----VYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKG  179 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---g~v~iwd~~~  179 (312)
                      ++.|.+.|....                ...+     ......   ....+.+ +++++++......   +.+...|..+
T Consensus       181 ~~~v~vi~~~~~----------------~v~~~~~~~~~~~~~---~P~~i~v-~~~g~~~yV~~~~~~~~~v~~id~~~  240 (381)
T COG3391         181 DNTVSVIDTSGN----------------SVVRGSVGSLVGVGT---GPAGIAV-DPDGNRVYVANDGSGSNNVLKIDTAT  240 (381)
T ss_pred             CCeEEEEeCCCc----------------ceeccccccccccCC---CCceEEE-CCCCCEEEEEeccCCCceEEEEeCCC
Confidence            999999997654                2221     111111   1456777 8999977665544   5999999988


Q ss_pred             CeeEEE-eecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCCC
Q 021484          180 GKLVRL-MVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDF  224 (312)
Q Consensus       180 ~~~~~~-~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~  224 (312)
                      +..... +.........+..+|+|..+.... ..+.+.+-|..+..+
T Consensus       241 ~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         241 GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence            876654 221111456788999999977664 458899988877654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.0056  Score=52.52  Aligned_cols=142  Identities=11%  Similarity=0.171  Sum_probs=90.7

Q ss_pred             EEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--------eEEEecCCcEEEEEc
Q 021484           45 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--------LLISYNDELVYLFEK  116 (312)
Q Consensus        45 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~l~s~~d~~i~iwd~  116 (312)
                      +|.++.....++-.|++.|+++.++...               .. |.-+.+.|+.+        -|+.-++..|+-||.
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~---------------~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp  411 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFE---------------DD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDP  411 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeecc---------------CC-cceeeccCCcchhcccccccEEeecCCceEEecc
Confidence            4555666778888999999866544322               22 55556666543        344457889999998


Q ss_pred             CCCcCCCCCcCCcccccCCCCCceEeccc--CCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE
Q 021484          117 NMGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN  194 (312)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  194 (312)
                      +-..              ...+..-++|.  ......|.+  .....++++|+.+|.|++||.-..+....+++...+|.
T Consensus       412 Rv~~--------------~~kl~~~q~kqy~~k~nFsc~a--TT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~  475 (644)
T KOG2395|consen  412 RVQG--------------KNKLAVVQSKQYSTKNNFSCFA--TTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK  475 (644)
T ss_pred             cccC--------------cceeeeeeccccccccccceee--ecCCceEEEeecCCcEEeehhhhhhhhhcccccCCcee
Confidence            7431              01111222221  111144554  34566899999999999999733334456677888999


Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          195 QLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       195 ~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                      .|..+.+|++++..+ +..+.+-++
T Consensus       476 hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  476 HVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eEEeeccCcEEEEec-ccEEEEEEE
Confidence            999999999966555 556666654

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.20  E-value=0.051  Score=49.15  Aligned_cols=66  Identities=9%  Similarity=0.150  Sum_probs=41.1

Q ss_pred             eeEEEEecCCCCEEEEeccCceEEE---EeccCCee-E---EEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021484          150 VKGVNFFGPNDEYVMSGSDCGHLFI---WKKKGGKL-V---RLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWA  218 (312)
Q Consensus       150 v~~v~~~s~~~~~l~~~~~dg~v~i---wd~~~~~~-~---~~~~-~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd  218 (312)
                      |..+.| +|+|..++... +|.|++   -....|+. +   ..+. .-...+.++.|.+++.++ .+..++.-.+|.
T Consensus       450 Issl~w-SpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        450 ISELQL-SRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             cCeEEE-CCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEE
Confidence            999999 99999988765 477877   44444541 1   1122 222346889999998864 444344344444

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.18  E-value=0.0017  Score=36.72  Aligned_cols=34  Identities=12%  Similarity=0.022  Sum_probs=30.3

Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       190 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      ...|..++|+|...++|.++.+|.|.++.+..++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence            3578999999999999999999999999986554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.16  E-value=0.0077  Score=52.23  Aligned_cols=182  Identities=13%  Similarity=0.065  Sum_probs=88.9

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEE-EccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVY-DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  109 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  109 (312)
                      +.-..++|.+.+  .+|+-...++|.++ ++....               ...+..  ...+..|-.   |.+|...+++
T Consensus        69 G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~---------------~k~i~~--~~~~~~If~---G~LL~~~~~~  126 (443)
T PF04053_consen   69 GSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV---------------VKSIKL--PFSVEKIFG---GNLLGVKSSD  126 (443)
T ss_dssp             EE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T---------------T-------SS-EEEEE----SSSEEEEETT
T ss_pred             CceeEEEEecCc--cEEEEECCCeEEEEEcCcccc---------------ceEEcC--CcccceEEc---CcEEEEECCC
Confidence            345567888854  57777778889996 332211               001101  112333322   8888887777


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC---------
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---------  180 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~---------  180 (312)
                      .|.+||..++                +.++.+...    .|..+.| ++++++++..+.+ .+.+++.+..         
T Consensus       127 ~i~~yDw~~~----------------~~i~~i~v~----~vk~V~W-s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g  184 (443)
T PF04053_consen  127 FICFYDWETG----------------KLIRRIDVS----AVKYVIW-SDDGELVALVTKD-SIYILKYNLEAVAAIPEEG  184 (443)
T ss_dssp             EEEEE-TTT------------------EEEEESS-----E-EEEEE--TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB
T ss_pred             CEEEEEhhHc----------------ceeeEEecC----CCcEEEE-ECCCCEEEEEeCC-eEEEEEecchhcccccccC
Confidence            9999999887                666666532    2789998 9999999888755 6667765422         


Q ss_pred             --eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021484          181 --KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  258 (312)
Q Consensus       181 --~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  258 (312)
                        ..+..+..-...|.+.+|.-+  .++-.+.. .|+.  +-.++...+. +....+......+....+.....++.+..
T Consensus       185 ~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~-~ld~~~yllgy~~~~~~ly~~Dr~~~v~~  258 (443)
T PF04053_consen  185 VEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA-HLDKPLYLLGYLPKENRLYLIDRDGNVIS  258 (443)
T ss_dssp             -GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE-E-SS--EEEEEETTTTEEEEE-TT--EEE
T ss_pred             chhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE-EcCCceEEEEEEccCCEEEEEECCCCEEE
Confidence              023333332568889999765  54444444 6666  3334322221 22222233333334456666667777766


Q ss_pred             EEec
Q 021484          259 LRLQ  262 (312)
Q Consensus       259 ~~~~  262 (312)
                      +.+.
T Consensus       259 ~~ld  262 (443)
T PF04053_consen  259 YELD  262 (443)
T ss_dssp             EE--
T ss_pred             EEEC
Confidence            6554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.14  Score=43.98  Aligned_cols=194  Identities=11%  Similarity=0.100  Sum_probs=118.0

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c---C
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N---D  108 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~---d  108 (312)
                      -..++.++.+.+.+++...+..|.+.|..+....              .....+  .....++++|+++.+..+ .   +
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~--------------~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~  139 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL--------------GSIPVG--LGPVGLAVDPDGKYVYVANAGNGN  139 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCccccee--------------eEeeec--cCCceEEECCCCCEEEEEecccCC
Confidence            3467788888557777777799999997766522              111122  145688999999744443 2   6


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEEeccCCeeEE---
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVR---  184 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~---  184 (312)
                      +.+.+.|..+.                +.......-.  . -..+++ +|+++.++.+. .++.|.+.|........   
T Consensus       140 ~~vsvid~~t~----------------~~~~~~~vG~--~-P~~~a~-~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~  199 (381)
T COG3391         140 NTVSVIDAATN----------------KVTATIPVGN--T-PTGVAV-DPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSV  199 (381)
T ss_pred             ceEEEEeCCCC----------------eEEEEEecCC--C-cceEEE-CCCCCeEEEEecCCCeEEEEeCCCcceecccc
Confidence            78888888776                4444432222  1 277888 99999766555 78999999977665543   


Q ss_pred             --EeecCccceEEEEEcCCCCeEEEEe-CC--CcEEEccCCCCCCCCC--CCChhhhhhhhccCCCCceeEEe-cCCceE
Q 021484          185 --LMVGDRHVVNQLEPHPHIPMFATCG-IE--KTVKLWAPMPTDFPPL--PDNAEKIMKANKQGREDHSRITL-TPDVIM  256 (312)
Q Consensus       185 --~~~~~~~~v~~~~~~p~~~~l~t~~-~d--~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i  256 (312)
                        ....+ .....+.++|++..+.... .+  +.+...|..++.....  ..... ........+++...... ...+.+
T Consensus       200 ~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V  277 (381)
T COG3391         200 GSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTV  277 (381)
T ss_pred             ccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeE
Confidence              12222 2345788999999754443 33  5888888887764222  21111 11122244554444443 444677


Q ss_pred             EEEEeccc
Q 021484          257 HVLRLQRR  264 (312)
Q Consensus       257 ~i~~~~~~  264 (312)
                      .+.|....
T Consensus       278 ~vid~~~~  285 (381)
T COG3391         278 SVIDGATD  285 (381)
T ss_pred             EEEeCCCC
Confidence            77765443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.13  E-value=0.063  Score=43.74  Aligned_cols=159  Identities=16%  Similarity=0.078  Sum_probs=88.8

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS  123 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~  123 (312)
                      +.|+.|+.+| +.+++.....              ....  ..+...|..+...++-..|+.-.|+.++++++..-....
T Consensus         8 ~~L~vGt~~G-l~~~~~~~~~--------------~~~~--i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~   70 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSDPS--------------KPTR--ILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVS   70 (275)
T ss_pred             CEEEEEECCC-EEEEEecCCc--------------ccee--EeecceEEEEEEecccCEEEEEcCCccEEEEchhhcccc
Confidence            6889999888 8999983221              1111  112334899999998888888778999999997642111


Q ss_pred             CCcCCcccccCCCCCceEecccCCceeeEEE-EecCCCCEEEEeccCceEEEEeccCC-----eeEEEeecCccceEEEE
Q 021484          124 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVN-FFGPNDEYVMSGSDCGHLFIWKKKGG-----KLVRLMVGDRHVVNQLE  197 (312)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~-~~s~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~~~  197 (312)
                      ... +....+.......+. ..  +.+...+ -....+...++.....+|.+|.+...     +..+.+.. ...+..++
T Consensus        71 ~~~-~~~~~~~~~~~~~~~-~~--~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~  145 (275)
T PF00780_consen   71 TSA-PLAFPKSRSLPTKLP-ET--KGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIA  145 (275)
T ss_pred             ccc-ccccccccccccccc-cc--CCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEE
Confidence            000 000000000000111 11  1133333 10234444455555669999887653     34455543 36788999


Q ss_pred             EcCCCCeEEEEeCCCcEEEccCCCCCCCCC
Q 021484          198 PHPHIPMFATCGIEKTVKLWAPMPTDFPPL  227 (312)
Q Consensus       198 ~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~  227 (312)
                      |.  ++.++.+. .+...+.|+.++....+
T Consensus       146 ~~--~~~i~v~~-~~~f~~idl~~~~~~~l  172 (275)
T PF00780_consen  146 FL--GNKICVGT-SKGFYLIDLNTGSPSEL  172 (275)
T ss_pred             Ee--CCEEEEEe-CCceEEEecCCCCceEE
Confidence            97  55666665 45688888887654433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.0021  Score=59.51  Aligned_cols=99  Identities=14%  Similarity=0.254  Sum_probs=71.2

Q ss_pred             CCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc
Q 021484          100 SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK  178 (312)
Q Consensus       100 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~  178 (312)
                      +..++.+ +.|.+-..|....                 ......+.....+|++++| +.+|..++.|-.+|.|.+||+.
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~n-----------------L~~~~~ne~v~~~Vtsvaf-n~dg~~l~~G~~~G~V~v~D~~  160 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGN-----------------LGPLHQNERVQGPVTSVAF-NQDGSLLLAGLGDGHVTVWDMH  160 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcc-----------------cchhhcCCccCCcceeeEe-cCCCceeccccCCCcEEEEEcc
Confidence            3345555 5788888887653                 2212233333356999999 9999999999999999999999


Q ss_pred             CCeeEEEeecCccceEEEE---EcCCCCeEEEEeCCCcEEEcc
Q 021484          179 GGKLVRLMVGDRHVVNQLE---PHPHIPMFATCGIEKTVKLWA  218 (312)
Q Consensus       179 ~~~~~~~~~~~~~~v~~~~---~~p~~~~l~t~~~d~~i~iwd  218 (312)
                      .++.++.+..|..+.+.+-   +..++..++++..-|.  +|.
T Consensus       161 ~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  161 RAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             CCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            9999988887776655544   4455566777776675  554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.11  E-value=0.15  Score=43.84  Aligned_cols=173  Identities=11%  Similarity=0.044  Sum_probs=87.4

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-----CCC---
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-----TSE---  101 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~---  101 (312)
                      .++|++++.|.-|  ++|.|..+|.+.|.|++...++....    +..   ..........++++.|+.     |+.   
T Consensus        86 ~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~----i~~---~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   86 QGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNEN----IRE---SFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEE----GGG-----T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             CCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeecc----ccc---cccccccccCeeEEEEEEEecCCCcccce
Confidence            6789999999777  99999999999999998776542210    000   001123456688888863     331   


Q ss_pred             eEEE-ecCCcEEEEEcCC-CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-C------------------
Q 021484          102 LLIS-YNDELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-D------------------  160 (312)
Q Consensus       102 ~l~s-~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~------------------  160 (312)
                      .+.. .+.|.+.+|.+.- ..+.    +.      .+.......+..  .+..+..++.+ |                  
T Consensus       157 ~L~vGTn~G~v~~fkIlp~~~g~----f~------v~~~~~~~~~~~--~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~  224 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKILPSSNGR----FS------VQFAGATTNHDS--PILSIIPINADTGESALATISAMQGLSKGIS  224 (395)
T ss_dssp             EEEEEETTSEEEEEEEEE-GGG-----EE------EEEEEEE--SS------EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred             EEEEEeCCCCEEEEEEecCCCCc----eE------EEEeeccccCCC--ceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence            4444 4689999998752 1000    00      000001111221  23333321111 1                  


Q ss_pred             -CEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEc-----CCCCeEEEEeCCCcEEEccCCCCC
Q 021484          161 -EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH-----PHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       161 -~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                       +-++....+..++++...+.+..............+.+-     ..+..|+.-..+|.|+++.+-.-+
T Consensus       225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk  293 (395)
T PF08596_consen  225 IPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK  293 (395)
T ss_dssp             --EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred             cCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence             123333447789999988777655544222233344442     244558888899999999987754

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PHA02713 hypothetical protein; Provisional

Probab=97.07  E-value=0.049  Score=49.19  Aligned_cols=92  Identities=3%  Similarity=0.027  Sum_probs=46.2

Q ss_pred             eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC------CcEEEccCCC-CCCCCCCCChhhhhhhhccCCC
Q 021484          171 HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMP-TDFPPLPDNAEKIMKANKQGRE  243 (312)
Q Consensus       171 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~  243 (312)
                      .+..||..+.+....-.-.......-...-++++.+.|+.+      ..+..||+.+ .+...+..-............+
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~  512 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHD  512 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEEC
Confidence            47778887765432111111111111112256777777654      2467899998 5654333222222222223336


Q ss_pred             CceeEEecCCc--eEEEEEec
Q 021484          244 DHSRITLTPDV--IMHVLRLQ  262 (312)
Q Consensus       244 ~~~l~s~~~d~--~i~i~~~~  262 (312)
                      +.+.+.|+.++  .+..+|..
T Consensus       513 ~~iyv~Gg~~~~~~~e~yd~~  533 (557)
T PHA02713        513 NTIMMLHCYESYMLQDTFNVY  533 (557)
T ss_pred             CEEEEEeeecceeehhhcCcc
Confidence            67778888777  44455543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.01  E-value=0.083  Score=40.86  Aligned_cols=107  Identities=12%  Similarity=0.086  Sum_probs=67.3

Q ss_pred             EEEEEEccCCCeEEE--ecCCcEEEEE--cCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe
Q 021484           91 ITGLAYSNTSELLIS--YNDELVYLFE--KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  166 (312)
Q Consensus        91 i~~~~~~~~~~~l~s--~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~  166 (312)
                      -..++|+.+.+.+..  +.+-.|.-||  ..++...+.  -.+.++.+.   +.+. +.   ..-.++. +.+|++.+++
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr--~~i~dlrk~---~~~e-~~---~PDGm~I-D~eG~L~Va~  229 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR--KVIFDLRKS---QPFE-SL---EPDGMTI-DTEGNLYVAT  229 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCc--ceeEEeccC---CCcC-CC---CCCcceE-ccCCcEEEEE
Confidence            347899988774444  3477787777  555421111  111111111   1111 11   1234555 6789999999


Q ss_pred             ccCceEEEEeccCCeeEEEeecCccceEEEEEc-CCCCeEEE
Q 021484          167 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH-PHIPMFAT  207 (312)
Q Consensus       167 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~t  207 (312)
                      -..++|...|..+|+.+.+++.....|++++|- |+-..|.+
T Consensus       230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYV  271 (310)
T ss_pred             ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence            999999999999999999999889999999994 33344433

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.0061  Score=56.58  Aligned_cols=100  Identities=18%  Similarity=0.236  Sum_probs=70.5

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP  122 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~  122 (312)
                      -.++.|++.|.+...|+...-              ++...-..-..+|++++|+.+|.+++.| .+|.|.+||...+   
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL--------------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---  162 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNL--------------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---  162 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhccc--------------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---
Confidence            468888888999888876421              2111113346889999999999988888 7999999999987   


Q ss_pred             CCCcCCcccccCCCCCceEecccCCc-eeeEEEEecCCCCEEEEeccCceEEEEe
Q 021484          123 SPLSLSPEDLQKREEPQVYSGHRNSQ-TVKGVNFFGPNDEYVMSGSDCGHLFIWK  176 (312)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~s~~~~~l~~~~~dg~v~iwd  176 (312)
                                   +..+.+..+..+. .|..+.+ ...+..++++...|.  +|.
T Consensus       163 -------------k~l~~i~e~~ap~t~vi~v~~-t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  163 -------------KILKVITEHGAPVTGVIFVGR-TSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             -------------cceeeeeecCCccceEEEEEE-eCCCcEEEEccCCCc--eEE
Confidence                         6777776555431 2445555 445557888887776  454

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.88  E-value=0.14  Score=42.89  Aligned_cols=153  Identities=15%  Similarity=0.201  Sum_probs=83.8

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-ecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH-WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      .+++|++++-- ++ . |+++. .+.|.+|++...+ +.             .... ......+.++...  +.+++.+ 
T Consensus        87 ~~g~V~ai~~~-~~-~-lv~~~-g~~l~v~~l~~~~~l~-------------~~~~-~~~~~~i~sl~~~--~~~I~vgD  146 (321)
T PF03178_consen   87 VKGPVTAICSF-NG-R-LVVAV-GNKLYVYDLDNSKTLL-------------KKAF-YDSPFYITSLSVF--KNYILVGD  146 (321)
T ss_dssp             ESS-EEEEEEE-TT-E-EEEEE-TTEEEEEEEETTSSEE-------------EEEE-E-BSSSEEEEEEE--TTEEEEEE
T ss_pred             ecCcceEhhhh-CC-E-EEEee-cCEEEEEEccCcccch-------------hhhe-ecceEEEEEEecc--ccEEEEEE
Confidence            36788888866 34 4 44433 4899999998775 32             1111 1112356666554  4466666 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC-------
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-------  179 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~-------  179 (312)
                      ....+.++......               ..+..+........++++.|. ++++.++.+..+|.+.++....       
T Consensus       147 ~~~sv~~~~~~~~~---------------~~l~~va~d~~~~~v~~~~~l-~d~~~~i~~D~~gnl~~l~~~~~~~~~~~  210 (321)
T PF03178_consen  147 AMKSVSLLRYDEEN---------------NKLILVARDYQPRWVTAAEFL-VDEDTIIVGDKDGNLFVLRYNPEIPNSRD  210 (321)
T ss_dssp             SSSSEEEEEEETTT---------------E-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTT
T ss_pred             cccCEEEEEEEccC---------------CEEEEEEecCCCccEEEEEEe-cCCcEEEEEcCCCeEEEEEECCCCccccc
Confidence            46666666443210               223333333333558888884 3446899999999999998652       


Q ss_pred             C--ee--EEEeecCccceEEE---EEcCC--CC------eEEEEeCCCcEEEcc
Q 021484          180 G--KL--VRLMVGDRHVVNQL---EPHPH--IP------MFATCGIEKTVKLWA  218 (312)
Q Consensus       180 ~--~~--~~~~~~~~~~v~~~---~~~p~--~~------~l~t~~~d~~i~iwd  218 (312)
                      +  +.  ...+. ....|+++   ++.|.  +.      .++.++.+|.|...-
T Consensus       211 ~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~  263 (321)
T PF03178_consen  211 GDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI  263 (321)
T ss_dssp             TTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred             ccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence            2  22  22222 23567777   55552  22      377888899988443

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.82  E-value=0.22  Score=41.18  Aligned_cols=159  Identities=9%  Similarity=-0.030  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCcEEEEE----------eCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021484           34 NAIVIDPRNPNYFAVG----------GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  103 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  103 (312)
                      -.+..+|++ +.++++          -..-.|.+||..+.....++..+..-+.     . ..  .....++++.+++++
T Consensus        39 ~~~~~spdg-k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~-----~-~~--~~~~~~~ls~dgk~~  109 (342)
T PF06433_consen   39 GNVALSPDG-KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA-----Q-VV--PYKNMFALSADGKFL  109 (342)
T ss_dssp             EEEEE-TTS-SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--------BS----GGGEEE-TTSSEE
T ss_pred             CceeECCCC-CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh-----e-ec--ccccceEEccCCcEE
Confidence            346788998 566553          2345699999998875443322211000     0 00  112245788999866


Q ss_pred             EEe--c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc-C
Q 021484          104 ISY--N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-G  179 (312)
Q Consensus       104 ~s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~-~  179 (312)
                      ...  . ...|.|.|+..+                +.+..+....     +...| +...+-+.+-+.||.+.-..+. .
T Consensus       110 ~V~N~TPa~SVtVVDl~~~----------------kvv~ei~~PG-----C~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~  167 (342)
T PF06433_consen  110 YVQNFTPATSVTVVDLAAK----------------KVVGEIDTPG-----CWLIY-PSGNRGFSMLCGDGSLLTVTLDAD  167 (342)
T ss_dssp             EEEEESSSEEEEEEETTTT----------------EEEEEEEGTS-----EEEEE-EEETTEEEEEETTSCEEEEEETST
T ss_pred             EEEccCCCCeEEEEECCCC----------------ceeeeecCCC-----EEEEE-ecCCCceEEEecCCceEEEEECCC
Confidence            664  3 778999999876                5555444222     22334 3334557788889999988887 5


Q ss_pred             CeeEEEee----cCccc-eEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          180 GKLVRLMV----GDRHV-VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       180 ~~~~~~~~----~~~~~-v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      |+......    ....+ +..-++...+..++-.+.+|.|+--|+....
T Consensus       168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~  216 (342)
T PF06433_consen  168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS  216 (342)
T ss_dssp             SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred             CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence            65542221    11122 2233444455555557788999988887765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.64  E-value=0.4  Score=43.52  Aligned_cols=185  Identities=11%  Similarity=0.080  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCcEEEEEeCC------CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           33 LNAIVIDPRNPNYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      -.+++... + .++++|+.|      .++..||..+.++....+          ... ..+.-.+..+    +|.+.|.|
T Consensus       325 ~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~----------M~~-~R~~~~v~~l----~g~iYavG  387 (571)
T KOG4441|consen  325 RVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAP----------MNT-KRSDFGVAVL----DGKLYAVG  387 (571)
T ss_pred             cccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCceeccCC----------ccC-ccccceeEEE----CCEEEEEe
Confidence            44555554 3 688999988      457788888777542210          000 1112222222    56655554


Q ss_pred             -cCCc-----EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc------eEEE
Q 021484          107 -NDEL-----VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG------HLFI  174 (312)
Q Consensus       107 -~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg------~v~i  174 (312)
                       .||.     +-.||..+..              +.....+......  ...+   .-+|...++|+.++      .+..
T Consensus       388 G~dg~~~l~svE~YDp~~~~--------------W~~va~m~~~r~~--~gv~---~~~g~iYi~GG~~~~~~~l~sve~  448 (571)
T KOG4441|consen  388 GFDGEKSLNSVECYDPVTNK--------------WTPVAPMLTRRSG--HGVA---VLGGKLYIIGGGDGSSNCLNSVEC  448 (571)
T ss_pred             ccccccccccEEEecCCCCc--------------ccccCCCCcceee--eEEE---EECCEEEEEcCcCCCccccceEEE
Confidence             4654     6677776541              1222212211111  2222   23677788888544      5778


Q ss_pred             EeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCCC-----cEEEccCCCCCCCCCCCChhhhhhhhccCCCCcee
Q 021484          175 WKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSR  247 (312)
Q Consensus       175 wd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~t~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (312)
                      ||..+++...  .+..-..... ++ .-++.+.+.||.|+     +|..||+.+.....+...............++...
T Consensus       449 YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly  526 (571)
T KOG4441|consen  449 YDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLY  526 (571)
T ss_pred             EcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEE
Confidence            8887765432  2221111111 21 22667788888776     37789998887654432222221111122355666


Q ss_pred             EEecCCce
Q 021484          248 ITLTPDVI  255 (312)
Q Consensus       248 ~s~~~d~~  255 (312)
                      +.|+.|+.
T Consensus       527 ~vGG~~~~  534 (571)
T KOG4441|consen  527 AVGGFDGN  534 (571)
T ss_pred             EEecccCc
Confidence            77776643

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.63  E-value=0.41  Score=41.66  Aligned_cols=159  Identities=12%  Similarity=0.202  Sum_probs=82.2

Q ss_pred             ceEEEEEcCCCCcEEEEE-eCCC----eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-
Q 021484           32 RLNAIVIDPRNPNYFAVG-GSDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-  105 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-  105 (312)
                      .+..++++|++ +++|.+ +..|    .++++|+.+++..             ...+ ..  .....+.|.++++.|+. 
T Consensus       125 ~~~~~~~Spdg-~~la~~~s~~G~e~~~l~v~Dl~tg~~l-------------~d~i-~~--~~~~~~~W~~d~~~~~y~  187 (414)
T PF02897_consen  125 SLGGFSVSPDG-KRLAYSLSDGGSEWYTLRVFDLETGKFL-------------PDGI-EN--PKFSSVSWSDDGKGFFYT  187 (414)
T ss_dssp             EEEEEEETTTS-SEEEEEEEETTSSEEEEEEEETTTTEEE-------------EEEE-EE--EESEEEEECTTSSEEEEE
T ss_pred             EeeeeeECCCC-CEEEEEecCCCCceEEEEEEECCCCcCc-------------CCcc-cc--cccceEEEeCCCCEEEEE
Confidence            44578899999 555543 4444    4999999998732             1111 11  11223999999885444 


Q ss_pred             ec-C----------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---C-c
Q 021484          106 YN-D----------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---C-G  170 (312)
Q Consensus       106 ~~-d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---d-g  170 (312)
                      .. +          ..|+.|.+.+...              .-...+...........+.. ++++++|+....   + .
T Consensus       188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~--------------~d~lvfe~~~~~~~~~~~~~-s~d~~~l~i~~~~~~~~s  252 (414)
T PF02897_consen  188 RFDEDQRTSDSGYPRQVYRHKLGTPQS--------------EDELVFEEPDEPFWFVSVSR-SKDGRYLFISSSSGTSES  252 (414)
T ss_dssp             ECSTTTSS-CCGCCEEEEEEETTS-GG--------------G-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEE
T ss_pred             EeCcccccccCCCCcEEEEEECCCChH--------------hCeeEEeecCCCcEEEEEEe-cCcccEEEEEEEccccCC
Confidence            32 2          1378888876510              11234444433211456776 899999775432   3 4


Q ss_pred             eEEEEeccCC----eeEEEeecCccce-EEEEEcCCCCeEEEEe---CCCcEEEccCCCCC
Q 021484          171 HLFIWKKKGG----KLVRLMVGDRHVV-NQLEPHPHIPMFATCG---IEKTVKLWAPMPTD  223 (312)
Q Consensus       171 ~v~iwd~~~~----~~~~~~~~~~~~v-~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~~  223 (312)
                      .+++.++..+    .....+......+ ..+... .+.+++...   ..+.|.-.++....
T Consensus       253 ~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  253 EVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             EEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             eEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccc
Confidence            5788888764    2233333333333 334333 444443332   23455555555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.49  E-value=0.19  Score=45.50  Aligned_cols=218  Identities=13%  Similarity=0.087  Sum_probs=108.4

Q ss_pred             cEEEEEeCC------CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC------Cc
Q 021484           44 NYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND------EL  110 (312)
Q Consensus        44 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d------~~  110 (312)
                      .+++.|+.+      ..+..||..++++......             . ....-.+++.. ++.+.++| .+      ..
T Consensus       286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-------------~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~  350 (571)
T KOG4441|consen  286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-------------P-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSS  350 (571)
T ss_pred             eEEEECCCCCCCcccceeEEecCCcCcEeecCCC-------------C-cccccccEEEE-CCEEEEEccccCCCcccce
Confidence            688888877      4688899888764322110             0 11112233333 34555554 46      24


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCce-----EEEEeccCCeeE--
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-----LFIWKKKGGKLV--  183 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~-----v~iwd~~~~~~~--  183 (312)
                      +..||...+.              +.....+......   .+++  .-+|...++|+.||.     +-.||..+.+.-  
T Consensus       351 ve~YD~~~~~--------------W~~~a~M~~~R~~---~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v  411 (571)
T KOG4441|consen  351 VERYDPRTNQ--------------WTPVAPMNTKRSD---FGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV  411 (571)
T ss_pred             EEEecCCCCc--------------eeccCCccCcccc---ceeE--EECCEEEEEeccccccccccEEEecCCCCccccc
Confidence            6788876641              1222222222221   2222  246888889998874     677887765432  


Q ss_pred             EEeecCccceEEEEEcCCCCeEEEEeCCC------cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCce--
Q 021484          184 RLMVGDRHVVNQLEPHPHIPMFATCGIEK------TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVI--  255 (312)
Q Consensus       184 ~~~~~~~~~v~~~~~~p~~~~l~t~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--  255 (312)
                      ..+.........+.+  +|.+.++||.++      ++..||+.+......+.-...-........++.+.+.|+.++.  
T Consensus       412 a~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~  489 (571)
T KOG4441|consen  412 APMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSA  489 (571)
T ss_pred             CCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCc
Confidence            222111122222223  777888887553      5788999988764443222211111112235667777777652  


Q ss_pred             ---EEEEEecccCccceeE-eecCCCccCCCCCCCeEEEeecCCCCC
Q 021484          256 ---MHVLRLQRRQTLAYRE-RRYNAADFESDEEEGETYLLGFSDSDA  298 (312)
Q Consensus       256 ---i~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~  298 (312)
                         +..+|..+. ...... -............++.+|+++..++..
T Consensus       490 ~~~VE~ydp~~~-~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~  535 (571)
T KOG4441|consen  490 LSSVERYDPETN-QWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNN  535 (571)
T ss_pred             cceEEEEcCCCC-ceeEcccCccccccccEEEECCEEEEEecccCcc
Confidence               444553332 221111 111111111123455689998766543

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.45  E-value=0.11  Score=47.07  Aligned_cols=102  Identities=17%  Similarity=0.068  Sum_probs=60.9

Q ss_pred             ccEEEEEEccCCCeEEEec-------CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           89 IHITGLAYSNTSELLISYN-------DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        89 ~~i~~~~~~~~~~~l~s~~-------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+.+.+.+|+|+.++...       |.  .|.+++...                 .......+.    ..+.-.| +|+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-----------------~~~~lt~g~----~~t~PsW-spD  407 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-----------------VAVQVLEGH----SLTRPSW-SLD  407 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-----------------cceeeecCC----CCCCceE-CCC
Confidence            4577889999998665532       33  355555422                 222222222    1677788 899


Q ss_pred             CCEEEEeccC------------ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484          160 DEYVMSGSDC------------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL  216 (312)
Q Consensus       160 ~~~l~~~~~d------------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~i  216 (312)
                      |..|++....            +.+.+.++..++...   ...+.|..+.|||+|..++... ++.|.+
T Consensus       408 G~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        408 ADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            8877766533            233333333333222   2245799999999999877665 577777

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.43  E-value=0.36  Score=38.70  Aligned_cols=156  Identities=12%  Similarity=0.170  Sum_probs=87.8

Q ss_pred             EEEcCCCCcEEEEEeC-----CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCc
Q 021484           36 IVIDPRNPNYFAVGGS-----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL  110 (312)
Q Consensus        36 ~~~~p~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~  110 (312)
                      -.|||+| .+|+..-.     -|.|=+||.+.+-        ..+.++      ..|.-....+.|.+||+.++..+.|.
T Consensus       119 Gvfs~dG-~~LYATEndfd~~rGViGvYd~r~~f--------qrvgE~------~t~GiGpHev~lm~DGrtlvvanGGI  183 (366)
T COG3490         119 GVFSPDG-RLLYATENDFDPNRGVIGVYDAREGF--------QRVGEF------STHGIGPHEVTLMADGRTLVVANGGI  183 (366)
T ss_pred             cccCCCC-cEEEeecCCCCCCCceEEEEeccccc--------ceeccc------ccCCcCcceeEEecCCcEEEEeCCce
Confidence            4689999 66666533     3789999998542        122222      55666677899999999777754321


Q ss_pred             -------------------EEEEEcCCCcCCCCCcCCcccccCCCCCce--Ee--cccCCceeeEEEEecCCCCEEEEec
Q 021484          111 -------------------VYLFEKNMGLGPSPLSLSPEDLQKREEPQV--YS--GHRNSQTVKGVNFFGPNDEYVMSGS  167 (312)
Q Consensus       111 -------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~~v~~~s~~~~~l~~~~  167 (312)
                                         +.+.|..++                .++..  +.  .+.  ..+..++. .++|..++.+-
T Consensus       184 ethpdfgR~~lNldsMePSlvlld~atG----------------~liekh~Lp~~l~~--lSiRHld~-g~dgtvwfgcQ  244 (366)
T COG3490         184 ETHPDFGRTELNLDSMEPSLVLLDAATG----------------NLIEKHTLPASLRQ--LSIRHLDI-GRDGTVWFGCQ  244 (366)
T ss_pred             ecccccCccccchhhcCccEEEEecccc----------------chhhhccCchhhhh--cceeeeee-CCCCcEEEEEE
Confidence                               222222222                22211  11  122  22777776 77777666554


Q ss_pred             cCce-----EEEEeccCCeeEEEeec-------CccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCCCC
Q 021484          168 DCGH-----LFIWKKKGGKLVRLMVG-------DRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFP  225 (312)
Q Consensus       168 ~dg~-----v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~  225 (312)
                      ..|.     -.+=....++++..+..       ....|-+++.+.+...++..+ ..+..-+||..++.+.
T Consensus       245 y~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv  315 (366)
T COG3490         245 YRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV  315 (366)
T ss_pred             eeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence            3322     11222233444444432       123466788877666655555 5556788999999763

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.43  E-value=0.63  Score=41.51  Aligned_cols=68  Identities=12%  Similarity=0.094  Sum_probs=43.3

Q ss_pred             cCCCCEEEEeccCc------------------eEEEEeccCCeeEEEeecCccceE------EEEEc----CCCC---eE
Q 021484          157 GPNDEYVMSGSDCG------------------HLFIWKKKGGKLVRLMVGDRHVVN------QLEPH----PHIP---MF  205 (312)
Q Consensus       157 s~~~~~l~~~~~dg------------------~v~iwd~~~~~~~~~~~~~~~~v~------~~~~~----p~~~---~l  205 (312)
                      ++.+..++.++.++                  .|.-+|..+|+.+-.++.-.....      ...+.    -++.   .+
T Consensus       225 d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V  304 (488)
T cd00216         225 DPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAI  304 (488)
T ss_pred             eCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEE
Confidence            45566777777655                  799999999998766542111110      01111    1232   57


Q ss_pred             EEEeCCCcEEEccCCCCCC
Q 021484          206 ATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       206 ~t~~~d~~i~iwd~~~~~~  224 (312)
                      +.++.+|.+...|.++++.
T Consensus       305 ~~g~~~G~l~ald~~tG~~  323 (488)
T cd00216         305 VHAPKNGFFYVLDRTTGKL  323 (488)
T ss_pred             EEECCCceEEEEECCCCcE
Confidence            7788899999999988863

The alignment model contains an 8-bladed beta-propeller.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.42  E-value=0.029  Score=47.59  Aligned_cols=102  Identities=13%  Similarity=0.098  Sum_probs=61.4

Q ss_pred             cCCCCEEEEec---------cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC
Q 021484          157 GPNDEYVMSGS---------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL  227 (312)
Q Consensus       157 s~~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~  227 (312)
                      ||++++++...         ..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|.+++..++....+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            46777766632         356799999998765443332 56788999999999988886 68999999876543222


Q ss_pred             C--C-------Chh-----h---hhhhhccCCCCceeEEecCC-ceEEEEE
Q 021484          228 P--D-------NAE-----K---IMKANKQGREDHSRITLTPD-VIMHVLR  260 (312)
Q Consensus       228 ~--~-------~~~-----~---~~~~~~~~~~~~~l~s~~~d-~~i~i~~  260 (312)
                      .  +       ...     .   .....+|++++..++....| ..++.+.
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~  129 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP  129 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence            1  1       111     1   12344677877777665544 4444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.39  E-value=0.0044  Score=47.37  Aligned_cols=106  Identities=7%  Similarity=0.049  Sum_probs=59.9

Q ss_pred             CCCCEEEEeccCceEEEEeccC-CeeEEEeecCccceEEE-EEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChh-hh
Q 021484          158 PNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQL-EPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAE-KI  234 (312)
Q Consensus       158 ~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~-~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~  234 (312)
                      ..+.-+++|+.+|.|.+|.... +.....+......|.++ .--.++.+..+++.|+.||.|++...+.....++.. .-
T Consensus        68 ~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~  147 (238)
T KOG2444|consen   68 TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES  147 (238)
T ss_pred             ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence            3467789999999999998762 22111111122233322 223345578888999999999998877544333333 11


Q ss_pred             hhhhccCCCCceeEEe--cCCceEEEEEecc
Q 021484          235 MKANKQGREDHSRITL--TPDVIMHVLRLQR  263 (312)
Q Consensus       235 ~~~~~~~~~~~~l~s~--~~d~~i~i~~~~~  263 (312)
                      ..........+++...  +.|..++.|++..
T Consensus       148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cceeEEecCCceEEeeccccchhhhhcchhh
Confidence            1111122233444444  5666666666543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.36  E-value=0.23  Score=39.19  Aligned_cols=65  Identities=14%  Similarity=0.074  Sum_probs=52.2

Q ss_pred             CCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       159 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      -|.+++.|+..|.+++.+.++|..+..+..-..-=......+++..+..++.|++.+..|+++..
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~  126 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG  126 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence            47889999999999999999998777665433221234567899999999999999999998765

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.34  E-value=0.22  Score=45.04  Aligned_cols=110  Identities=6%  Similarity=0.131  Sum_probs=70.8

Q ss_pred             EEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE-ecCCCCEEEEecc
Q 021484           91 ITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSGSD  168 (312)
Q Consensus        91 i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-~s~~~~~l~~~~~  168 (312)
                      +.-+.-+.-++..+.. +...+.|||.+.+                ..... ........|.++.| +.|+++.+++.+.
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~----------------~lE~~-~~f~~~~~I~dLDWtst~d~qsiLaVGf   94 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSG----------------VLEYE-ESFSEDDPIRDLDWTSTPDGQSILAVGF   94 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCc----------------EEEEe-eeecCCCceeeceeeecCCCCEEEEEEc
Confidence            3444445555544444 4668999999876                21111 11112244899998 4678999999999


Q ss_pred             CceEEEEecc---------CCeeEEEe--ecCc-cceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          169 CGHLFIWKKK---------GGKLVRLM--VGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       169 dg~v~iwd~~---------~~~~~~~~--~~~~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                      .+.|.++.-.         +..++..+  ..|+ .+|.+..|.++|..++.++  ..+.|++-
T Consensus        95 ~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen   95 PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            9999998631         11233333  3444 6899999999998876664  67888774

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.31  E-value=0.02  Score=48.61  Aligned_cols=93  Identities=13%  Similarity=0.194  Sum_probs=56.6

Q ss_pred             ccCCCeEEE----------ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe
Q 021484           97 SNTSELLIS----------YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  166 (312)
Q Consensus        97 ~~~~~~l~s----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~  166 (312)
                      |||+++++.          +..+.+.+||+.++                 ....+.....  .+....| +|+|+.++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~-----------------~~~~l~~~~~--~~~~~~~-sP~g~~~~~v   60 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG-----------------EITPLTPPPP--KLQDAKW-SPDGKYIAFV   60 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT-----------------EEEESS-EET--TBSEEEE--SSSTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCC-----------------ceEECcCCcc--cccccee-ecCCCeeEEE
Confidence            577775554          22456899999876                 2222222232  3788888 9999999877


Q ss_pred             ccCceEEEEeccCCeeEEEe-ecC----------------ccceEEEEEcCCCCeEEEEeC
Q 021484          167 SDCGHLFIWKKKGGKLVRLM-VGD----------------RHVVNQLEPHPHIPMFATCGI  210 (312)
Q Consensus       167 ~~dg~v~iwd~~~~~~~~~~-~~~----------------~~~v~~~~~~p~~~~l~t~~~  210 (312)
                      . ++.|++.+..+++..+.- .+.                -+.-..+-|||++++||..-.
T Consensus        61 ~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   61 R-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             E-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             e-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            5 689999998877543211 110                012245789999999877653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.30  E-value=0.22  Score=41.00  Aligned_cols=155  Identities=15%  Similarity=0.197  Sum_probs=78.3

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  109 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  109 (312)
                      ...+..+.-++++ ++++++..-....-|+......             .+..  ......|..+.|.|++.+.+.+..|
T Consensus       144 ~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w-------------~~~~--r~~~~riq~~gf~~~~~lw~~~~Gg  207 (302)
T PF14870_consen  144 SGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTW-------------QPHN--RNSSRRIQSMGFSPDGNLWMLARGG  207 (302)
T ss_dssp             ---EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS--------------EEEE----SSS-EEEEEE-TTS-EEEEETTT
T ss_pred             cceeEeEEECCCC-cEEEEECcccEEEEecCCCccc-------------eEEc--cCccceehhceecCCCCEEEEeCCc
Confidence            4568888888988 7777776655555677543221             1111  2235789999999999877777888


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee--
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV--  187 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--  187 (312)
                      .|+.=+.....            .+... .........-.+..++| .+++...++|+ .|.+ +...+.|+.-...+  
T Consensus       208 ~~~~s~~~~~~------------~~w~~-~~~~~~~~~~~~ld~a~-~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~  271 (302)
T PF14870_consen  208 QIQFSDDPDDG------------ETWSE-PIIPIKTNGYGILDLAY-RPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVG  271 (302)
T ss_dssp             EEEEEE-TTEE------------EEE----B-TTSS--S-EEEEEE-SSSS-EEEEES-TT-E-EEESSTTSS-EE-GGG
T ss_pred             EEEEccCCCCc------------ccccc-ccCCcccCceeeEEEEe-cCCCCEEEEeC-CccE-EEeCCCCccceECccc
Confidence            88887722110            00000 00111111112889999 77777766665 4444 45556666544433  


Q ss_pred             -cCccceEEEEEcCCCCeEEEEeCCCcEEEc
Q 021484          188 -GDRHVVNQLEPHPHIPMFATCGIEKTVKLW  217 (312)
Q Consensus       188 -~~~~~v~~~~~~p~~~~l~t~~~d~~i~iw  217 (312)
                       .-...++.+.|.+..+-++.| .+|.|-=|
T Consensus       272 ~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  272 ENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             TTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             cCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence             223467889997665666665 57776544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.20  E-value=0.48  Score=37.84  Aligned_cols=156  Identities=10%  Similarity=0.105  Sum_probs=89.0

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND  108 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d  108 (312)
                      .-...+.|..++ .++-+.+.-|  .|+.+|+.+++......            +  ....---.++...+.-+..+-.+
T Consensus        45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~------------l--~~~~FgEGit~~~d~l~qLTWk~  109 (264)
T PF05096_consen   45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVP------------L--PPRYFGEGITILGDKLYQLTWKE  109 (264)
T ss_dssp             -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE---------------TTT--EEEEEEETTEEEEEESSS
T ss_pred             ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEE------------C--CccccceeEEEECCEEEEEEecC
Confidence            345578886666 6777766655  79999999987432111            0  00111223444433334555579


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  188 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  188 (312)
                      +...+||..+-                +.+..+.-...   =..++.   +++.|+.......|+++|..+.+....+..
T Consensus       110 ~~~f~yd~~tl----------------~~~~~~~y~~E---GWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V  167 (264)
T PF05096_consen  110 GTGFVYDPNTL----------------KKIGTFPYPGE---GWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQV  167 (264)
T ss_dssp             SEEEEEETTTT----------------EEEEEEE-SSS-----EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred             CeEEEEccccc----------------eEEEEEecCCc---ceEEEc---CCCEEEEECCccceEEECCcccceEEEEEE
Confidence            99999999876                56666654432   466764   567777777788999999988777666542


Q ss_pred             C--c---cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          189 D--R---HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       189 ~--~---~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      .  .   ..++.+.|. +|...|=.=....|..-|+.++.+
T Consensus       168 ~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V  207 (264)
T PF05096_consen  168 TDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKV  207 (264)
T ss_dssp             EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BE
T ss_pred             EECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeE
Confidence            2  1   234556665 444444444555666667666653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.20  E-value=0.85  Score=40.67  Aligned_cols=193  Identities=10%  Similarity=0.090  Sum_probs=102.5

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccE--EEEEEccCCCeEEEecCCcEEEEEcCCCcC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI--TGLAYSNTSELLISYNDELVYLFEKNMGLG  121 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~  121 (312)
                      ..++.++.++.+.-.|..+++.....+......        . ....+  ..++...++.+++...++.|+-+|..++  
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~--------~-~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG--  130 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPAD--------R-GCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETG--  130 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCcc--------c-cccccccCCcEEccCCeEEEecCCCeEEEEECCCC--
Confidence            356677788999999999988654432221100        0 00000  0111211245555567999999999888  


Q ss_pred             CCCCcCCcccccCCCCCceEecccC--Cc--eeeEEEEecCCCCEEEEec---------cCceEEEEeccCCeeEEEeec
Q 021484          122 PSPLSLSPEDLQKREEPQVYSGHRN--SQ--TVKGVNFFGPNDEYVMSGS---------DCGHLFIWKKKGGKLVRLMVG  188 (312)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~v~~v~~~s~~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~~~  188 (312)
                                    +.+..+.....  ..  ......+ .  +..++.++         .+|.|..+|..+|+.+-.+..
T Consensus       131 --------------~~~W~~~~~~~~~~~~~i~ssP~v-~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         131 --------------KQVWKFGNNDQVPPGYTMTGAPTI-V--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             --------------CEeeeecCCCCcCcceEecCCCEE-E--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence                          45544432221  00  0111122 1  23444443         468899999999988766543


Q ss_pred             Ccc--------------------ce-EEEEEcCCCCeEEEEeCCC------------------cEEEccCCCCCC---CC
Q 021484          189 DRH--------------------VV-NQLEPHPHIPMFATCGIEK------------------TVKLWAPMPTDF---PP  226 (312)
Q Consensus       189 ~~~--------------------~v-~~~~~~p~~~~l~t~~~d~------------------~i~iwd~~~~~~---~~  226 (312)
                      ...                    .+ ...++.+.+..++.++.++                  .|.-.|+.+++.   ..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~  273 (488)
T cd00216         194 TEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ  273 (488)
T ss_pred             cCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence            211                    01 1234445566666666554                  688888887763   11


Q ss_pred             CCCCh--------hhhhhhhccCCCC---ceeEEecCCceEEEEEecccC
Q 021484          227 LPDNA--------EKIMKANKQGRED---HSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       227 ~~~~~--------~~~~~~~~~~~~~---~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      ...+.        ..++... ...++   ..++.++.++.+..+|..+++
T Consensus       274 ~~~~~~~~~~~~s~p~~~~~-~~~~g~~~~~V~~g~~~G~l~ald~~tG~  322 (488)
T cd00216         274 TTPHDLWDYDGPNQPSLADI-KPKDGKPVPAIVHAPKNGFFYVLDRTTGK  322 (488)
T ss_pred             CCCCCCcccccCCCCeEEec-cccCCCeeEEEEEECCCceEEEEECCCCc
Confidence            11111        1111100 00112   257778889999999887763

The alignment model contains an 8-bladed beta-propeller.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.09  E-value=0.35  Score=41.33  Aligned_cols=157  Identities=15%  Similarity=0.195  Sum_probs=78.3

Q ss_pred             ceEEEEEcCCCCcEEEEEe-----------CCC-eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC
Q 021484           32 RLNAIVIDPRNPNYFAVGG-----------SDE-YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT   99 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   99 (312)
                      ....|+|.++| +++++-.           ..+ .|.+++-..+.        ...   .....+.........+++.++
T Consensus        15 ~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd--------G~~---d~~~vfa~~l~~p~Gi~~~~~   82 (367)
T TIGR02604        15 NPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGD--------GKY---DKSNVFAEELSMVTGLAVAVG   82 (367)
T ss_pred             CCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC--------CCc---ceeEEeecCCCCccceeEecC
Confidence            35689999998 6666642           223 67666543221        000   001111222334578899998


Q ss_pred             CCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc--CCceeeEEEEecCCCCEEEEecc---------
Q 021484          100 SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVMSGSD---------  168 (312)
Q Consensus       100 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~s~~~~~l~~~~~---------  168 (312)
                      | ++++......++.+....... +..  ..     .....+....  .......++| .|+|.+.++-+.         
T Consensus        83 G-lyV~~~~~i~~~~d~~gdg~a-d~~--~~-----~l~~~~~~~~~~~~~~~~~l~~-gpDG~LYv~~G~~~~~~~~~~  152 (367)
T TIGR02604        83 G-VYVATPPDILFLRDKDGDDKA-DGE--RE-----VLLSGFGGQINNHHHSLNSLAW-GPDGWLYFNHGNTLASKVTRP  152 (367)
T ss_pred             C-EEEeCCCeEEEEeCCCCCCCC-CCc--cE-----EEEEccCCCCCcccccccCceE-CCCCCEEEecccCCCceeccC
Confidence            8 666544433334354322100 000  00     0111111110  0012678888 899887665442         


Q ss_pred             ----------CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC
Q 021484          169 ----------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE  211 (312)
Q Consensus       169 ----------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d  211 (312)
                                .|.|.-++..+++. ..+...-.....++|+|+|.++++-..+
T Consensus       153 ~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       153 GTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence                      14566666665543 2332222345689999999987765533

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.03  E-value=0.88  Score=39.32  Aligned_cols=162  Identities=14%  Similarity=0.158  Sum_probs=92.1

Q ss_pred             cCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-----CCCeEEEecCCcEEE
Q 021484           39 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-----TSELLISYNDELVYL  113 (312)
Q Consensus        39 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~s~~d~~i~i  113 (312)
                      ++++...+++|+..|.++||+.......       +-..+..    ..-..+|..++.-+     +...||.-.-..+.+
T Consensus        33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~-------~~~lllE----~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~v  101 (418)
T PF14727_consen   33 SPSGSDKIIVGSYSGILRIYDPSGNEFQ-------PEDLLLE----TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSV  101 (418)
T ss_pred             CCCCccEEEEeccccEEEEEccCCCCCC-------CccEEEE----EecCCcEEEEEeccccCCCCcceEEEecCCEEEE
Confidence            3455579999999999999999544310       0001111    12246777776543     223666667888999


Q ss_pred             EEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE---ecCC-CCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021484          114 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF---FGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  189 (312)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~---~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  189 (312)
                      |.+....+.....      .. -.+.....|.-......+++   -... ..++.+=+.||.+.+|+-+.-.....+.. 
T Consensus       102 Y~v~~~~g~~~~g------~~-~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-  173 (418)
T PF14727_consen  102 YSVSLVDGTVEHG------NQ-YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-  173 (418)
T ss_pred             EEEEecCCCcccC------cE-EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence            9884331110000      00 01122222322222233332   1122 46788889999999999775443344433 


Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       190 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                      .--.--+.|.|.-..|++++.+..|.-|..
T Consensus       174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  174 FLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            112234778888889999998888888874

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.00  E-value=0.84  Score=39.63  Aligned_cols=31  Identities=19%  Similarity=0.356  Sum_probs=27.2

Q ss_pred             ccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021484           89 IHITGLAYSNTSELLISYNDELVYLFEKNMG  119 (312)
Q Consensus        89 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~  119 (312)
                      +.+..+.|+.+.++++...||.+++||+...
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence            7899999999878888889999999998754

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PHA02713 hypothetical protein; Provisional

Probab=95.95  E-value=0.57  Score=42.49  Aligned_cols=137  Identities=9%  Similarity=0.032  Sum_probs=65.6

Q ss_pred             CCCCEEEEeccCc-----eEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCC-------------------
Q 021484          158 PNDEYVMSGSDCG-----HLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE-------------------  211 (312)
Q Consensus       158 ~~~~~l~~~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~t~~~d-------------------  211 (312)
                      .+++..+.|+.++     .+..||..+.+...  .+.........+..  ++.+.+.||.+                   
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccc
Confidence            3677777887654     47889987764432  22111111112222  67777777754                   


Q ss_pred             ----CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC------ceEEEEEecccCccceeEeecCC-CccC
Q 021484          212 ----KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD------VIMHVLRLQRRQTLAYRERRYNA-ADFE  280 (312)
Q Consensus       212 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~i~~~~~~~~~~~~~~~~~~-~~~~  280 (312)
                          ..+..||+.+.....+...............++.+.+.|+.+      ..+..+|..+.+.......-+.. ....
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~  507 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH  507 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence                247789988876543332111111111122345566666543      23455664431122222111111 1111


Q ss_pred             CCCCCCeEEEeecCCC
Q 021484          281 SDEEEGETYLLGFSDS  296 (312)
Q Consensus       281 ~~~~~~~v~~~~~~~~  296 (312)
                      ...-++.+|+++--++
T Consensus       508 ~~~~~~~iyv~Gg~~~  523 (557)
T PHA02713        508 TILHDNTIMMLHCYES  523 (557)
T ss_pred             eEEECCEEEEEeeecc
Confidence            1223556999986555

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.93  E-value=0.49  Score=41.87  Aligned_cols=155  Identities=7%  Similarity=0.035  Sum_probs=90.4

Q ss_pred             cceEEEEEcCCCCcEEEEEe--CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-----CeE
Q 021484           31 IRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-----ELL  103 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l  103 (312)
                      .++..++|.- |.+.++|.-  .+|.+++=|-..                      .+.-+.|..+.|.|-+     .+|
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds~v----------------------iGqFEhV~GlsW~P~~~~~~paLL   76 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDSKV----------------------IGQFEHVHGLSWAPPCTADTPALL   76 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccCCccE----------------------eeccceeeeeeecCcccCCCCceE
Confidence            3688899975 536666653  344444333221                      2334678999999964     266


Q ss_pred             EEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC-Cce--eeEEEEecCCCCEEEEeccCceEEEEecc--
Q 021484          104 ISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQT--VKGVNFFGPNDEYVMSGSDCGHLFIWKKK--  178 (312)
Q Consensus       104 ~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--v~~v~~~s~~~~~l~~~~~dg~v~iwd~~--  178 (312)
                      |.-....|.+|.+....           ..+.+.+.....+.. +-+  -..+.| +|....|++-+....=.+++..  
T Consensus        77 AVQHkkhVtVWqL~~s~-----------~e~~K~l~sQtcEi~e~~pvLpQGCVW-HPk~~iL~VLT~~dvSV~~sV~~d  144 (671)
T PF15390_consen   77 AVQHKKHVTVWQLCPST-----------TERNKLLMSQTCEIREPFPVLPQGCVW-HPKKAILTVLTARDVSVLPSVHCD  144 (671)
T ss_pred             EEeccceEEEEEeccCc-----------cccccceeeeeeeccCCcccCCCcccc-cCCCceEEEEecCceeEeeeeeeC
Confidence            76779999999986321           001122222221111 011  234567 8988888766654444455544  


Q ss_pred             CCeeEEEeecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCC
Q 021484          179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMP  221 (312)
Q Consensus       179 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~  221 (312)
                      +.+....++ ..+.|.|.+|.+||+.|+.+ +..=.-++||-..
T Consensus       145 ~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  145 SSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            333334444 45789999999999875444 4445678898543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.86  E-value=0.75  Score=37.13  Aligned_cols=170  Identities=12%  Similarity=0.083  Sum_probs=98.5

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      ...|.++.|+|+. +.|.+......-.++=...|+++..+..         .    + -...-.|++..+|++.++- .+
T Consensus        85 ~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL---------~----g-~~DpE~Ieyig~n~fvi~dER~  149 (316)
T COG3204          85 TANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPL---------T----G-FSDPETIEYIGGNQFVIVDERD  149 (316)
T ss_pred             cccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecc---------c----c-cCChhHeEEecCCEEEEEehhc
Confidence            4459999999998 5555555556665666566775543321         1    1 1223467777788888886 49


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-e--EEE
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-L--VRL  185 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~--~~~  185 (312)
                      ..++++.+.......    ..... + -.+.......  .-...++| ++..+.|+.+-+-.-+.||.+..+. .  +..
T Consensus       150 ~~l~~~~vd~~t~~~----~~~~~-~-i~L~~~~k~N--~GfEGlA~-d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~  220 (316)
T COG3204         150 RALYLFTVDADTTVI----SAKVQ-K-IPLGTTNKKN--KGFEGLAW-DPVDHRLFVAKERNPIGIFEVTQSPSSLSVHA  220 (316)
T ss_pred             ceEEEEEEcCCccEE----eccce-E-EeccccCCCC--cCceeeec-CCCCceEEEEEccCCcEEEEEecCCccccccc
Confidence            999998876541000    00000 0 0011111112  22789999 8999999988888878887765332 1  111


Q ss_pred             eecCc-------cceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC
Q 021484          186 MVGDR-------HVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       186 ~~~~~-------~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~  223 (312)
                      ...+.       ..|.++.|++.... ++-+.+++.+.-.|.....
T Consensus       221 ~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~  266 (316)
T COG3204         221 SLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV  266 (316)
T ss_pred             ccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence            11111       24677888875544 5566677777777766553

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.84  E-value=0.18  Score=39.07  Aligned_cols=107  Identities=13%  Similarity=0.151  Sum_probs=66.4

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEE--ccCCeecCCCCCCCCcccccccccc-cCCCccEEEEEEccCCCeEEEe-cCC
Q 021484           34 NAIVIDPRNPNYFAVGGSDEYARVYD--IRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISY-NDE  109 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~-~d~  109 (312)
                      +.++|+.+...+.++-+.+-+|.-||  ..++.+.+.-    .+  +..+... ..+ ...-.++...+|.+.++. +.+
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~----~i--~dlrk~~~~e~-~~PDGm~ID~eG~L~Va~~ng~  233 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRK----VI--FDLRKSQPFES-LEPDGMTIDTEGNLYVATFNGG  233 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcc----ee--EEeccCCCcCC-CCCCcceEccCCcEEEEEecCc
Confidence            46888887756667778889997787  6677643211    00  0011000 011 111234446677766664 799


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  165 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~  165 (312)
                      +|..+|..++                +.+..+.-....  +++++|--++-..|++
T Consensus       234 ~V~~~dp~tG----------------K~L~eiklPt~q--itsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  234 TVQKVDPTTG----------------KILLEIKLPTPQ--ITSCCFGGKNLDILYV  271 (310)
T ss_pred             EEEEECCCCC----------------cEEEEEEcCCCc--eEEEEecCCCccEEEE
Confidence            9999999998                788888877755  9999994444344443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.84  E-value=0.045  Score=29.97  Aligned_cols=31  Identities=13%  Similarity=0.213  Sum_probs=26.5

Q ss_pred             ceEEEEEcCCCC--cEEEEEeCCCeEEEEEccC
Q 021484           32 RLNAIVIDPRNP--NYFAVGGSDEYARVYDIRK   62 (312)
Q Consensus        32 ~v~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~   62 (312)
                      .|.+++|+|...  .+|+.+-.-|.|.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            588999998664  6888888889999999995

It contains a characteristic DLL sequence motif.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.83  E-value=0.76  Score=36.93  Aligned_cols=102  Identities=11%  Similarity=0.150  Sum_probs=67.8

Q ss_pred             EEEEEEccCCC-eEEEe-cCC-cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec
Q 021484           91 ITGLAYSNTSE-LLISY-NDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  167 (312)
Q Consensus        91 i~~~~~~~~~~-~l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~  167 (312)
                      ...++++|... -++.+ .-| ...++|..+.                +...++....+.-.--.=.| +++|.+|++.-
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~----------------~~pv~~~s~~~RHfyGHGvf-s~dG~~LYATE  132 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGA----------------QEPVTLVSQEGRHFYGHGVF-SPDGRLLYATE  132 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCC----------------cCcEEEecccCceeeccccc-CCCCcEEEeec
Confidence            34678888765 33334 444 4678888776                44444443332211223346 99999998764


Q ss_pred             c-----CceEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021484          168 D-----CGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       168 ~-----dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~t~~  209 (312)
                      .     -|.|-|||.+.+ +.+.++..|.-....+.|.+||+.++.+.
T Consensus       133 ndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         133 NDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             CCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            3     467999998743 45677778877778899999999987764

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.81  E-value=1  Score=38.63  Aligned_cols=156  Identities=10%  Similarity=0.068  Sum_probs=72.1

Q ss_pred             EcCCCCcEEEEE--eC----CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec----
Q 021484           38 IDPRNPNYFAVG--GS----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----  107 (312)
Q Consensus        38 ~~p~~~~~l~~~--~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----  107 (312)
                      --|+| ++++++  ..    -|-+.++|-++.++....+.+..            ...--..+-|.|..+.++|++    
T Consensus       137 clp~G-~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~------------~~~~gYDfw~qpr~nvMiSSeWg~P  203 (461)
T PF05694_consen  137 CLPDG-RIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRG------------PQPFGYDFWYQPRHNVMISSEWGAP  203 (461)
T ss_dssp             E-SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-T------------T------EEEETTTTEEEE-B---H
T ss_pred             ecCCc-cEEEEeccCCCCCCCCcEEEEcCccccccceeccCCC------------CCCCCCCeEEcCCCCEEEEeccCCh
Confidence            34667 677664  22    25577778776664433222111            122234555666555555543    


Q ss_pred             -----------------CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE-ecCCCCEEEE-ecc
Q 021484          108 -----------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMS-GSD  168 (312)
Q Consensus       108 -----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-~s~~~~~l~~-~~~  168 (312)
                                       ...+.+||+.+.                +.++++.--........+.| +.|+..+=++ +..
T Consensus       204 ~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r----------------~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aL  267 (461)
T PF05694_consen  204 SMFEKGFNPEDLEAGKYGHSLHVWDWSTR----------------KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCAL  267 (461)
T ss_dssp             HHHTT---TTTHHHH-S--EEEEEETTTT----------------EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE-
T ss_pred             hhcccCCChhHhhcccccCeEEEEECCCC----------------cEeeEEecCCCCCceEEEEecCCCCccceEEEEec
Confidence                             234889998876                77777764433233556666 3555555333 334


Q ss_pred             CceEEEEec-cCCe----eEEEeecC-----------------ccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCC
Q 021484          169 CGHLFIWKK-KGGK----LVRLMVGD-----------------RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPT  222 (312)
Q Consensus       169 dg~v~iwd~-~~~~----~~~~~~~~-----------------~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~  222 (312)
                      ..+|..|-- ..++    .+..+...                 ..-|+++..|.+.++|..++ .+|.||.||+...
T Consensus       268 ss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  268 SSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             -EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence            556665543 3332    22222110                 23578999999999976666 8999999998764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.81  E-value=0.1  Score=40.84  Aligned_cols=72  Identities=13%  Similarity=0.230  Sum_probs=51.9

Q ss_pred             EcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccccc-------CCCccEEEEEEccCCCeEEEecCCc
Q 021484           38 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-------KNNIHITGLAYSNTSELLISYNDEL  110 (312)
Q Consensus        38 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~s~~d~~  110 (312)
                      +...+ .++++-+.+|.+++||+.+++......        ....++.       .....|..+.++.+|.-+++-++|.
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~--------Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~   88 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPV--------SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGD   88 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCc--------cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            34455 678888999999999999988643321        1111111       3567889999999998888877888


Q ss_pred             EEEEEcCC
Q 021484          111 VYLFEKNM  118 (312)
Q Consensus       111 i~iwd~~~  118 (312)
                      .+.|+..-
T Consensus        89 ~y~y~~~L   96 (219)
T PF07569_consen   89 SYSYSPDL   96 (219)
T ss_pred             EEEecccc
Confidence            99998754

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.64  E-value=0.61  Score=40.68  Aligned_cols=70  Identities=11%  Similarity=0.193  Sum_probs=54.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV  111 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i  111 (312)
                      .-.|++-..+|  .+++|+.+|.||+||- .+.              ..+..+.+-..+|..+..+.+|+.|++..+..+
T Consensus       432 nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~--------------~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyL  494 (644)
T KOG2395|consen  432 NFSCFATTESG--YIVVGSLKGDIRLYDR-IGR--------------RAKTALPGLGDAIKHVDVTADGKWILATCKTYL  494 (644)
T ss_pred             ccceeeecCCc--eEEEeecCCcEEeehh-hhh--------------hhhhcccccCCceeeEEeeccCcEEEEecccEE
Confidence            34566666665  8999999999999997 444              334444677889999999999998888878888


Q ss_pred             EEEEcCC
Q 021484          112 YLFEKNM  118 (312)
Q Consensus       112 ~iwd~~~  118 (312)
                      .+-++.-
T Consensus       495 lLi~t~~  501 (644)
T KOG2395|consen  495 LLIDTLI  501 (644)
T ss_pred             EEEEEec
Confidence            8877643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.61  E-value=1.1  Score=37.26  Aligned_cols=165  Identities=10%  Similarity=0.069  Sum_probs=87.6

Q ss_pred             CCCCcEEEEEeCCCeEEEEEcc-CCeecCCCCCCCCcccccccccccCCCccEE-EEEEccCC-CeEEEecCCcEEEEEc
Q 021484           40 PRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHIT-GLAYSNTS-ELLISYNDELVYLFEK  116 (312)
Q Consensus        40 p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~-~~l~s~~d~~i~iwd~  116 (312)
                      |.+++-|.+-+.||++.-..+. .++..         +  ....++....+++. .-++...+ .++..+-+|.|+-.|+
T Consensus       144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~---------~--~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dl  212 (342)
T PF06433_consen  144 PSGNRGFSMLCGDGSLLTVTLDADGKEA---------Q--KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADL  212 (342)
T ss_dssp             EEETTEEEEEETTSCEEEEEETSTSSEE---------E--EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred             ecCCCceEEEecCCceEEEEECCCCCEe---------E--eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEec
Confidence            4444668888999999999987 44421         0  01111122222222 22344433 4666667888888888


Q ss_pred             CCCcCCCCCcCCcccccCCC-CCceEecccCCceeeEEEEecCCCCEEEEecc----------CceEEEEeccCCeeEEE
Q 021484          117 NMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----------CGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~  185 (312)
                      ......   ....|.+.+-. ......  .+.  -.-+++ ++..+.|++.-.          ...|.++|+.+++.+..
T Consensus       213 sg~~~~---~~~~~~~~t~~e~~~~Wr--PGG--~Q~~A~-~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~R  284 (342)
T PF06433_consen  213 SGDSAK---FGKPWSLLTDAEKADGWR--PGG--WQLIAY-HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVAR  284 (342)
T ss_dssp             TTSSEE---EEEEEESS-HHHHHTTEE--E-S--SS-EEE-ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEE
T ss_pred             cCCccc---ccCcccccCccccccCcC--Ccc--eeeeee-ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEE
Confidence            664100   00011100000 000000  011  233566 444444443222          12488899999999998


Q ss_pred             eecCccceEEEEEcCCCC-eEEEEe-CCCcEEEccCCCCCC
Q 021484          186 MVGDRHVVNQLEPHPHIP-MFATCG-IEKTVKLWAPMPTDF  224 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~-~l~t~~-~d~~i~iwd~~~~~~  224 (312)
                      +.. ..++.++..+.+.+ .|++.+ .++.|.+||..+++.
T Consensus       285 i~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  285 IPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             EEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred             EeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence            874 24677899988765 565544 689999999999864

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PHA03098 kelch-like protein; Provisional

Probab=95.58  E-value=0.88  Score=41.13  Aligned_cols=67  Identities=12%  Similarity=0.081  Sum_probs=36.3

Q ss_pred             CCCEEEEeccC------ceEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC--------CcEEEccCCCC
Q 021484          159 NDEYVMSGSDC------GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE--------KTVKLWAPMPT  222 (312)
Q Consensus       159 ~~~~l~~~~~d------g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~t~~~d--------~~i~iwd~~~~  222 (312)
                      +++..+.|+.+      ..+..||..+.+....  +....... ++ ..-++..++.|+.+        ..+.+||+.+.
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence            56666777632      4588899877654321  11111111 12 22255666666642        23888999887


Q ss_pred             CCCCC
Q 021484          223 DFPPL  227 (312)
Q Consensus       223 ~~~~~  227 (312)
                      +...+
T Consensus       467 ~W~~~  471 (534)
T PHA03098        467 KWTEL  471 (534)
T ss_pred             ceeeC
Confidence            75444

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.50  E-value=1.2  Score=36.90  Aligned_cols=150  Identities=16%  Similarity=0.123  Sum_probs=84.6

Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEE
Q 021484           35 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF  114 (312)
Q Consensus        35 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iw  114 (312)
                      +-.|.++...++.+--..+.|.-|+..+++..          .       ..+...+.++..-..+..|+++.. -++++
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~----------~-------~~~p~~~~~~~~~d~~g~Lv~~~~-g~~~~   90 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR----------V-------FPSPGGFSSGALIDAGGRLIACEH-GVRLL   90 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceE----------E-------EECCCCcccceeecCCCeEEEEcc-ccEEE
Confidence            34577777557777778888999998866411          1       111223344444334445555433 23444


Q ss_pred             EcCCCcCCCCCcCCcccccCCCCCceE----ecccCCceeeEEEEecCCCCEEEEecc-----------CceEEEEeccC
Q 021484          115 EKNMGLGPSPLSLSPEDLQKREEPQVY----SGHRNSQTVKGVNFFGPNDEYVMSGSD-----------CGHLFIWKKKG  179 (312)
Q Consensus       115 d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~v~~~s~~~~~l~~~~~-----------dg~v~iwd~~~  179 (312)
                      +..++                .....+    .+... ...+.+.. .|+|.+.++...           -|.|+-+|. .
T Consensus        91 ~~~~~----------------~~~t~~~~~~~~~~~-~r~ND~~v-~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~  151 (307)
T COG3386          91 DPDTG----------------GKITLLAEPEDGLPL-NRPNDGVV-DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D  151 (307)
T ss_pred             eccCC----------------ceeEEeccccCCCCc-CCCCceeE-cCCCCEEEeCCCccccCccccCCcceEEEEcC-C
Confidence            54433                111111    11111 12456666 788887665443           233555554 4


Q ss_pred             CeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCC
Q 021484          180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMP  221 (312)
Q Consensus       180 ~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~  221 (312)
                      +..++.+..+-..-+.++|||+++.|..+. ..+.|.-|++..
T Consensus       152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~  194 (307)
T COG3386         152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP  194 (307)
T ss_pred             CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence            666666665555668899999998876665 457888887653

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.19  E-value=0.86  Score=42.41  Aligned_cols=72  Identities=15%  Similarity=0.229  Sum_probs=50.3

Q ss_pred             eeeEEEEecCCCCEEEEeccCceEEEEecc---------CCee---EEEee--------cCccceEEEEEcCCC---CeE
Q 021484          149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---------GGKL---VRLMV--------GDRHVVNQLEPHPHI---PMF  205 (312)
Q Consensus       149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~---------~~~~---~~~~~--------~~~~~v~~~~~~p~~---~~l  205 (312)
                      .|..+.. +++|.+|+..+..|.+.+.=.+         .|+.   .+.+.        .+...|..+.|||.+   .+|
T Consensus        86 ~v~~i~~-n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISL-NPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEE-CCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            3888988 9999999988886655443222         1111   12221        233578899999974   678


Q ss_pred             EEEeCCCcEEEccCCC
Q 021484          206 ATCGIEKTVKLWAPMP  221 (312)
Q Consensus       206 ~t~~~d~~i~iwd~~~  221 (312)
                      +.-..|+++|+||+..
T Consensus       165 ~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEecCCEEEEEecCC
Confidence            8888999999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.18  E-value=0.6  Score=40.22  Aligned_cols=87  Identities=17%  Similarity=0.180  Sum_probs=58.9

Q ss_pred             cCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC---
Q 021484           85 GKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---  160 (312)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~---  160 (312)
                      ......+.+|+.+|.+++.|.+ +-|.|.++|+.++                ..++.++|.++.. +.-+.......   
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~----------------~vvrmWKGYRdAq-c~wi~~~~~~~~~~  366 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG----------------IVVRMWKGYRDAQ-CGWIEVPEEGDRDR  366 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC----------------hhhhhhccCccce-EEEEEeeccccccc
Confidence            4455678899999999888887 4899999999987                6777777776531 11111101111   


Q ss_pred             -------------C-EEEEeccCceEEEEeccCCeeEEEeec
Q 021484          161 -------------E-YVMSGSDCGHLFIWKKKGGKLVRLMVG  188 (312)
Q Consensus       161 -------------~-~l~~~~~dg~v~iwd~~~~~~~~~~~~  188 (312)
                                   . +++-+-.-|.|-||.+++|..+..+..
T Consensus       367 ~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  367 SNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             ccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence                         1 233456688899999998888776653

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.99  E-value=1.8  Score=37.34  Aligned_cols=121  Identities=11%  Similarity=0.088  Sum_probs=71.6

Q ss_pred             cCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE
Q 021484           85 GKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  163 (312)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l  163 (312)
                      ....++|.++.|++|.+.||.- .+..|.+++.....            .  +.....+.......|....| +.+ .-+
T Consensus        63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~------------~--~l~~~~~ck~k~~~IlGF~W-~~s-~e~  126 (657)
T KOG2377|consen   63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN------------S--QLEYTQECKTKNANILGFCW-TSS-TEI  126 (657)
T ss_pred             ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc------------h--hhHHHHHhccCcceeEEEEE-ecC-eeE
Confidence            3446799999999999999985 69999999984430            0  11111111112123888888 444 444


Q ss_pred             EEeccCceEEEEeccC-CeeEEEeecCccceEEEEEcCCCCeEE-EEe-CCCcEEEccCCCC
Q 021484          164 MSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFA-TCG-IEKTVKLWAPMPT  222 (312)
Q Consensus       164 ~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~-t~~-~d~~i~iwd~~~~  222 (312)
                      |..+..| +-+|-... ...++..+.|...|.-..|.|+.+.++ +.+ ..+++.=+-++.+
T Consensus       127 A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  127 AFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            4444333 44454332 334555667888888889999988733 333 3444444444443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.87  E-value=0.03  Score=51.43  Aligned_cols=158  Identities=12%  Similarity=0.097  Sum_probs=83.7

Q ss_pred             ceEEEEEcC---CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEE-----------Ec
Q 021484           32 RLNAIVIDP---RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA-----------YS   97 (312)
Q Consensus        32 ~v~~~~~~p---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~   97 (312)
                      .+.-+.|.|   +. .++..+-.++.+++.++....                ..++.+|...++.++           .+
T Consensus       182 ~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~----------------~~l~rsHs~~~~d~a~~~~g~~~l~~lS  244 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRAL----------------RSLFRSHSQRVTDMAFFAEGVLKLASLS  244 (1283)
T ss_pred             Ccceeeeccccccc-ceeeeccCCCceeEeeechHH----------------HHHHHhcCCCcccHHHHhhchhhheeeC
Confidence            345566665   44 577778888999988776432                112233544444332           68


Q ss_pred             cCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC--------CCCEEEEec-
Q 021484           98 NTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--------NDEYVMSGS-  167 (312)
Q Consensus        98 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~--------~~~~l~~~~-  167 (312)
                      |||+.++.. .||.++.|.+.-....+.           .++...+.|.....|+.+ |+..        .-.++++++ 
T Consensus       245 pDGtv~a~a~~dG~v~f~Qiyi~g~~~~-----------rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd  312 (1283)
T KOG1916|consen  245 PDGTVFAWAISDGSVGFYQIYITGKIVH-----------RCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTD  312 (1283)
T ss_pred             CCCcEEEEeecCCccceeeeeeeccccH-----------hhhhccCCCCCCCceeee-eccccccCCccceeEEEEeccc
Confidence            888888875 688888777632211111           333444444422223333 2111        112344444 


Q ss_pred             cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe------------EEEEeCCCcEEEccCCC
Q 021484          168 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM------------FATCGIEKTVKLWAPMP  221 (312)
Q Consensus       168 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~------------l~t~~~d~~i~iwd~~~  221 (312)
                      ....+++|.....+|+..+  ....|..|. -+++..            +++-+.+++|++|.-+.
T Consensus       313 ~nre~k~w~~a~w~Cll~~--~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  313 VNREEKFWAEAPWQCLLDK--LIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             CCcceeEeeccchhhhhhh--cccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence            4567899987777765211  122333343 222221            33456788999997443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.86  E-value=0.024  Score=52.01  Aligned_cols=163  Identities=10%  Similarity=0.025  Sum_probs=90.1

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccC--CeecCCCCCCCCcccccccccccCCCccEEEEEEcc---CCCe
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN---TSEL  102 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~  102 (312)
                      |.++.|-.+.|-......++  -.-|.+.+|++.-  |++..          -...+........+.-+.|.|   +.-+
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~----------~l~v~~~~p~gs~~~~V~wcp~~~~~~~  197 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQP----------QLEVTPITPYGSDPQLVSWCPIAVNKVY  197 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhcccccc----------ceEEeecCcCCCCcceeeecccccccce
Confidence            44667777777432212222  3447788999863  32111          011111122233445566665   3335


Q ss_pred             EEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE----------ecCCCCEEEEeccCce
Q 021484          103 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF----------FGPNDEYVMSGSDCGH  171 (312)
Q Consensus       103 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~----------~s~~~~~l~~~~~dg~  171 (312)
                      +..+ .++.+++.+....                 ....+.+|...  +..++|          .+|||..++.++.||.
T Consensus       198 ic~~~~~~~i~lL~~~ra-----------------~~~l~rsHs~~--~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~  258 (1283)
T KOG1916|consen  198 ICYGLKGGEIRLLNINRA-----------------LRSLFRSHSQR--VTDMAFFAEGVLKLASLSPDGTVFAWAISDGS  258 (1283)
T ss_pred             eeeccCCCceeEeeechH-----------------HHHHHHhcCCC--cccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence            5555 4888888776553                 33445555533  333332          2899999999999999


Q ss_pred             EEEEecc-----CCeeEEEeecCcc-ceEEEEEcCCC---------CeEEEEe-CCCcEEEccCCC
Q 021484          172 LFIWKKK-----GGKLVRLMVGDRH-VVNQLEPHPHI---------PMFATCG-IEKTVKLWAPMP  221 (312)
Q Consensus       172 v~iwd~~-----~~~~~~~~~~~~~-~v~~~~~~p~~---------~~l~t~~-~d~~i~iwd~~~  221 (312)
                      +++|.+.     .-.++..++.|.+ +-.|.-++.+.         .++++++ ....+++|....
T Consensus       259 v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~  324 (1283)
T KOG1916|consen  259 VGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP  324 (1283)
T ss_pred             cceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence            8888753     2345667777773 33333333322         1344444 556799998553

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.84  E-value=1.1  Score=38.89  Aligned_cols=112  Identities=8%  Similarity=0.000  Sum_probs=66.7

Q ss_pred             cEEEEEEccCCCeEEEe-c-CC----cEEEEEcCCCcCCCCCcCCcccccCCCCCc-eEecccCCceeeEEEEecCCCCE
Q 021484           90 HITGLAYSNTSELLISY-N-DE----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEY  162 (312)
Q Consensus        90 ~i~~~~~~~~~~~l~s~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~s~~~~~  162 (312)
                      .+....++|+|++++.+ + .|    .++++|+.++                +.+. .+....    ...+.| .++++.
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg----------------~~l~d~i~~~~----~~~~~W-~~d~~~  183 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG----------------KFLPDGIENPK----FSSVSW-SDDGKG  183 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT----------------EEEEEEEEEEE----SEEEEE-CTTSSE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC----------------cCcCCcccccc----cceEEE-eCCCCE
Confidence            34467899999977764 3 44    4999999887                3332 222111    233889 888777


Q ss_pred             EEEecc-----------CceEEEEeccCCee--EEEeecCccc--eEEEEEcCCCCeEEEE-eCC---CcEEEccCCCC
Q 021484          163 VMSGSD-----------CGHLFIWKKKGGKL--VRLMVGDRHV--VNQLEPHPHIPMFATC-GIE---KTVKLWAPMPT  222 (312)
Q Consensus       163 l~~~~~-----------dg~v~iwd~~~~~~--~~~~~~~~~~--v~~~~~~p~~~~l~t~-~~d---~~i~iwd~~~~  222 (312)
                      |+....           ...|+.|.+.+...  ...+......  ...+..++++++++.. ...   ..+.+.++...
T Consensus       184 ~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  184 FFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            654432           23477888776543  2344433332  5678899999995543 322   34777777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.82  E-value=2.3  Score=36.59  Aligned_cols=205  Identities=11%  Similarity=0.104  Sum_probs=88.0

Q ss_pred             cEEEE-EeCCCeEEEEEccCCeecCCCCCCCCccccccccccc-CCCccEEEEEEccCCCeEEEe-c--C----CcEEEE
Q 021484           44 NYFAV-GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNTSELLISY-N--D----ELVYLF  114 (312)
Q Consensus        44 ~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~-~--d----~~i~iw  114 (312)
                      ++|+. |-..+.|+|.|+.+.--     .+.-.....+..+.. ..-.....+..-|+|.+++++ +  +    |-+.++
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr-----~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll  162 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPR-----KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL  162 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TT-----S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred             CcEEeeeeccCcEEEEECCCCCC-----CCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence            44544 55789999999985420     000011111111111 111223334445788877774 2  3    237777


Q ss_pred             EcCCCcCCCCCcCCcccccCCCCCceEecccC-CceeeEEEEecCCCCEEEEec--------------------cCceEE
Q 021484          115 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFFGPNDEYVMSGS--------------------DCGHLF  173 (312)
Q Consensus       115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~s~~~~~l~~~~--------------------~dg~v~  173 (312)
                      |-++.                +.......... ...-...-| .|..+.+++..                    ...++.
T Consensus       163 D~~tf----------------~v~g~We~~~~~~~~gYDfw~-qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~  225 (461)
T PF05694_consen  163 DGETF----------------EVKGRWEKDRGPQPFGYDFWY-QPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLH  225 (461)
T ss_dssp             -TTT------------------EEEE--SB-TT------EEE-ETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEE
T ss_pred             cCccc----------------cccceeccCCCCCCCCCCeEE-cCCCCEEEEeccCChhhcccCCChhHhhcccccCeEE
Confidence            76654                23333322211 112344544 67777776654                    256899


Q ss_pred             EEeccCCeeEEEeecCc--cceEEEEE--cCCCCe-EEEEeCCCcEEEccC-CCCC-----CCCCCCC------------
Q 021484          174 IWKKKGGKLVRLMVGDR--HVVNQLEP--HPHIPM-FATCGIEKTVKLWAP-MPTD-----FPPLPDN------------  230 (312)
Q Consensus       174 iwd~~~~~~~~~~~~~~--~~v~~~~~--~p~~~~-l~t~~~d~~i~iwd~-~~~~-----~~~~~~~------------  230 (312)
                      +||+.+.+.++++....  ..+..+.|  .|+..+ ++.+-...+|-.|-- ..++     +..++..            
T Consensus       226 vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~  305 (461)
T PF05694_consen  226 VWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLK  305 (461)
T ss_dssp             EEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGG
T ss_pred             EEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccc
Confidence            99999999999887443  23456666  466666 555545555555432 3322     1111110            


Q ss_pred             ----hhhhhhhhccCCCCcee-EEecCCceEEEEEecccCcccee
Q 021484          231 ----AEKIMKANKQGREDHSR-ITLTPDVIMHVLRLQRRQTLAYR  270 (312)
Q Consensus       231 ----~~~~~~~~~~~~~~~~l-~s~~~d~~i~i~~~~~~~~~~~~  270 (312)
                          ..++++....+.+.++| ++.=-.|.++.+|+.....+...
T Consensus       306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~  350 (461)
T PF05694_consen  306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV  350 (461)
T ss_dssp             GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred             ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence                12344555566666665 45667899999999876554443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=94.81  E-value=1.7  Score=34.80  Aligned_cols=171  Identities=15%  Similarity=0.137  Sum_probs=80.2

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCc
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL  110 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~  110 (312)
                      -.-.+++..++ .++++.-.++.+.++++........   ...+..+.. .+...++..+-.++|.|.++.|... ...-
T Consensus        66 D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~~~~---~~~~~~~~l-~~~~~~N~G~EGla~D~~~~~L~v~kE~~P  140 (248)
T PF06977_consen   66 DYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTTSLD---RADVQKISL-GFPNKGNKGFEGLAYDPKTNRLFVAKERKP  140 (248)
T ss_dssp             SEEEEEE-STT-EEEEEETTTTEEEEEEE----TT-----EEEEEEEE----S---SS--EEEEEETTTTEEEEEEESSS
T ss_pred             CceeEEEECCC-EEEEEEcCCCcEEEEEEeccccccc---hhhceEEec-ccccCCCcceEEEEEcCCCCEEEEEeCCCC
Confidence            35567776655 5555555688999998854320000   000111111 1112355668999999987754444 4555


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCc
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  190 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  190 (312)
                      ..+|.+......  ..+......   .........  ..+.++++++..+++++.......|..+| .+|+++..+....
T Consensus       141 ~~l~~~~~~~~~--~~~~~~~~~---~~~~~~~~~--~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~  212 (248)
T PF06977_consen  141 KRLYEVNGFPGG--FDLFVSDDQ---DLDDDKLFV--RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDR  212 (248)
T ss_dssp             EEEEEEESTT-S--S--EEEE-H---HHH-HT--S--S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-ST
T ss_pred             hhhEEEccccCc--cceeecccc---cccccccee--ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCC
Confidence            556665431000  000000000   000000111  22788998666788888889999999999 5688776664322


Q ss_pred             ---------cceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484          191 ---------HVVNQLEPHPHIPMFATCGIEKTVKL  216 (312)
Q Consensus       191 ---------~~v~~~~~~p~~~~l~t~~~d~~i~i  216 (312)
                               ...-.|+|.++|++.+++ +-+..++
T Consensus       213 g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~  246 (248)
T PF06977_consen  213 GFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR  246 (248)
T ss_dssp             TGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred             cccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence                     256789999998776554 4444443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.73  E-value=1.3  Score=37.54  Aligned_cols=154  Identities=12%  Similarity=0.057  Sum_probs=76.3

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCe--EEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEY--ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE  109 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~  109 (312)
                      -+.=+|.++|.++|..+..||.  +.+.|+.+++..+..               .+.........++|+.+.++.- ...
T Consensus        38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT---------------dg~g~~~~g~~~s~~~~~~~Yv~~~~  102 (386)
T PF14583_consen   38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT---------------DGPGDNTFGGFLSPDDRALYYVKNGR  102 (386)
T ss_dssp             TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE------------------SS-B-TTT-EE-TTSSEEEEEETTT
T ss_pred             ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc---------------cCCCCCccceEEecCCCeEEEEECCC
Confidence            3445677888666666665654  666677777633211               1111112235567887766554 567


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe-cCCCCEEEEec---------------------
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF-GPNDEYVMSGS---------------------  167 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-s~~~~~l~~~~---------------------  167 (312)
                      .|+-.|+.+.                +....+......  +-...|. +.++..++-.-                     
T Consensus       103 ~l~~vdL~T~----------------e~~~vy~~p~~~--~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a  164 (386)
T PF14583_consen  103 SLRRVDLDTL----------------EERVVYEVPDDW--KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA  164 (386)
T ss_dssp             EEEEEETTT------------------EEEEEE--TTE--EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred             eEEEEECCcC----------------cEEEEEECCccc--ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence            8888899886                444445444432  3333442 34455443221                     


Q ss_pred             -cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC-----cEEEccCC
Q 021484          168 -DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWAPM  220 (312)
Q Consensus       168 -~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~-----~i~iwd~~  220 (312)
                       -...|.-.|+.+|+....+. -...+..+.|+|....+++=+.+|     .-|||-++
T Consensus       165 ~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~  222 (386)
T PF14583_consen  165 RPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN  222 (386)
T ss_dssp             ---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred             CCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence             13356667788887655554 345678899999888766554333     13667554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.72  E-value=0.24  Score=38.83  Aligned_cols=70  Identities=16%  Similarity=0.185  Sum_probs=53.3

Q ss_pred             cCCCCEEEEeccCceEEEEeccCCeeEEEe-------e-------cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          157 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-------V-------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       157 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                      ...+++|++.+.+|.+++||+.+++.+..-       .       .....|..+..+.+|.-+++-+ +|....|+..-+
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence            457889999999999999999988764321       1       2446788889998887777765 688999998877


Q ss_pred             CCCCC
Q 021484          223 DFPPL  227 (312)
Q Consensus       223 ~~~~~  227 (312)
                      ....+
T Consensus        98 ~W~~v  102 (219)
T PF07569_consen   98 CWIRV  102 (219)
T ss_pred             eeEEe
Confidence            65443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.72  E-value=1.8  Score=34.81  Aligned_cols=160  Identities=11%  Similarity=0.017  Sum_probs=87.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCc
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL  110 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~  110 (312)
                      .+.+.++++++..+.+....++.-.+|-...+.              .......  ...+....|++++.+.+.. .+..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--------------~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~   88 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--------------PVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGG   88 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--------------cceeecc--CCccccccccCCCCEEEEEcCCCc
Confidence            688999999994444444233334444433332              1111111  2367778999998866664 4555


Q ss_pred             EEEEE-cCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec---cCceEEEEecc---CC---
Q 021484          111 VYLFE-KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKK---GG---  180 (312)
Q Consensus       111 i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~---~dg~v~iwd~~---~~---  180 (312)
                      .+++. ...+.               ..............|..+.+ +|+|..++...   .++.|.+--+.   .+   
T Consensus        89 ~~~~~~~~~g~---------------~~~~~v~~~~~~~~I~~l~v-SpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~  152 (253)
T PF10647_consen   89 VRVVRDSASGT---------------GEPVEVDWPGLRGRITALRV-SPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR  152 (253)
T ss_pred             eEEEEecCCCc---------------ceeEEecccccCCceEEEEE-CCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc
Confidence            56553 22220               11111111111014999999 99999887655   35777776532   23   


Q ss_pred             ---eeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEE-ccCCCCC
Q 021484          181 ---KLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKL-WAPMPTD  223 (312)
Q Consensus       181 ---~~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~i-wd~~~~~  223 (312)
                         .+..........+.++.|.+++.+++.+. .++.+.. .......
T Consensus       153 ~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~  200 (253)
T PF10647_consen  153 RLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGP  200 (253)
T ss_pred             eeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCc
Confidence               11122222345789999999998866555 4443444 4444433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.55  E-value=0.59  Score=44.60  Aligned_cols=122  Identities=11%  Similarity=-0.098  Sum_probs=75.2

Q ss_pred             ccEEEEEEccCCCeEEE--e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc----cCCceeeEEEEecCCC-
Q 021484           89 IHITGLAYSNTSELLIS--Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH----RNSQTVKGVNFFGPND-  160 (312)
Q Consensus        89 ~~i~~~~~~~~~~~l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~~~s~~~-  160 (312)
                      -++..+...+|+...+.  . .+-.|+.||++.-......           ..+.+..+    .......++.| +|.- 
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~-----------~~~pl~~s~ts~ek~vf~~~~~w-nP~vp  168 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE-----------TTVPLKNSATSFEKPVFQLKNVW-NPLVP  168 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh-----------hccccccccchhccccccccccc-cCCcc
Confidence            45566667778764433  3 3557899999764211100           01111111    11122566777 5543 


Q ss_pred             CEEEEeccCceEEEEeccCCe-eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          161 EYVMSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       161 ~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      -..+.+..|+.|++..+.... .+..+. ....+++++|+|.|+.++.|-..|++.-|....+.
T Consensus       169 ~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei  231 (1405)
T KOG3630|consen  169 LNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI  231 (1405)
T ss_pred             chhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccce
Confidence            335667788999888765332 233332 34577999999999999999999999999877664

>PHA02790 Kelch-like protein; Provisional

Probab=94.45  E-value=3.1  Score=37.12  Aligned_cols=64  Identities=6%  Similarity=-0.058  Sum_probs=35.1

Q ss_pred             CCCEEEEeccCc---eEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC
Q 021484          159 NDEYVMSGSDCG---HLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL  227 (312)
Q Consensus       159 ~~~~l~~~~~dg---~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~  227 (312)
                      +++..+.|+.++   .+..||..+.+....  +.........+  .-++++.+.|+   .+.+||+.+.+...+
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~W~~~  430 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSNTWTLI  430 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE--EECCEEEEECC---ceEEecCCCCcEeEc
Confidence            577777777543   467888876654321  11111111112  23566666663   577899988765443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.37  E-value=1.2  Score=38.93  Aligned_cols=141  Identities=11%  Similarity=0.136  Sum_probs=85.0

Q ss_pred             EEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--------CeEEEecCCcEEEEEc
Q 021484           45 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--------ELLISYNDELVYLFEK  116 (312)
Q Consensus        45 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~s~~d~~i~iwd~  116 (312)
                      ++..|....+++-.|+..|+++.++               .-|.. + -+.|.|..        +-|+.-++..|.-.|.
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW---------------~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDP  544 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEW---------------DLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDP  544 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEe---------------ecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecc
Confidence            4445666777888888888754332               22222 2 45666643        2455556777766666


Q ss_pred             CCCcCCCCCcCCcccccCCCCCce--EecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE
Q 021484          117 NMGLGPSPLSLSPEDLQKREEPQV--YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN  194 (312)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  194 (312)
                      +-..               ..+..  ++.........+..  .....++++|+..|.|++||.-.......+++....|.
T Consensus       545 R~~g---------------NKi~v~esKdY~tKn~Fss~~--tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk  607 (776)
T COG5167         545 RARG---------------NKIKVVESKDYKTKNKFSSGM--TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIK  607 (776)
T ss_pred             cccC---------------Cceeeeeehhccccccccccc--cccCceEEEecCCCceeeehhhcchhhhcCccccccee
Confidence            5421               11111  11111111123332  34567899999999999999664444556677778899


Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484          195 QLEPHPHIPMFATCGIEKTVKLWAPM  220 (312)
Q Consensus       195 ~~~~~p~~~~l~t~~~d~~i~iwd~~  220 (312)
                      .+..+.+|+++++.+ ..++.+-|+.
T Consensus       608 ~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         608 HIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             eeEeecCCcEEEEee-cceEEEEecc
Confidence            999999999966555 3566676654

>PHA03098 kelch-like protein; Provisional

Probab=94.17  E-value=2.2  Score=38.65  Aligned_cols=67  Identities=7%  Similarity=0.073  Sum_probs=36.8

Q ss_pred             CCCEEEEeccC--------ceEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC-----CcEEEccCCCCC
Q 021484          159 NDEYVMSGSDC--------GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTD  223 (312)
Q Consensus       159 ~~~~l~~~~~d--------g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~  223 (312)
                      ++...+.|+..        ..+.+||..+.+....  +.........+.+  +++.++.|+.+     ..|.+||+.+..
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            46666666642        2388899887654322  1111111112222  66677777643     468888888776


Q ss_pred             CCCC
Q 021484          224 FPPL  227 (312)
Q Consensus       224 ~~~~  227 (312)
                      ...+
T Consensus       515 W~~~  518 (534)
T PHA03098        515 WTLF  518 (534)
T ss_pred             EEec
Confidence            5443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.01  E-value=4.3  Score=37.99  Aligned_cols=87  Identities=17%  Similarity=0.171  Sum_probs=53.0

Q ss_pred             ccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe------cccCCceeeEEEEecCC---
Q 021484           89 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS------GHRNSQTVKGVNFFGPN---  159 (312)
Q Consensus        89 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~v~~~s~~---  159 (312)
                      -.|..|..+|+|++++-.+...|.|..+....+.... +  ++....-..+.+.      .......|..+.| +|.   
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~-~--~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~W-hP~s~~  160 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGE-F--EDGKKEINCRTVPVDERFFTSNSSLEIKQVRW-HPWSES  160 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCcccc-c--cCCCcceeEEEEEechhhccCCCCceEEEEEE-cCCCCC
Confidence            4688999999999888877677777776543211100 0  0000000111111      1111234899999 665   


Q ss_pred             CCEEEEeccCceEEEEeccC
Q 021484          160 DEYVMSGSDCGHLFIWKKKG  179 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~  179 (312)
                      +..|+.-+.|+++++||+..
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCeEEEEecCCEEEEEecCC
Confidence            58899999999999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.94  E-value=0.74  Score=43.97  Aligned_cols=152  Identities=7%  Similarity=-0.005  Sum_probs=88.6

Q ss_pred             cceEEEEEcCCCCcEEEE--EeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eEEEe
Q 021484           31 IRLNAIVIDPRNPNYFAV--GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISY  106 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~  106 (312)
                      .++..+...+++ ...++  .+.+..|..||+++-.......    ...++.............++.|+|.-.  .++..
T Consensus       101 ~pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~----~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l  175 (1405)
T KOG3630|consen  101 IPIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYET----TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL  175 (1405)
T ss_pred             ccceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhh----ccccccccchhccccccccccccCCccchhhhhc
Confidence            355666666665 33333  3444578889998654211100    111111111122234456788988764  33344


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .|+.|++..+....               .....+. ..  ..+++++| +|.|++++.|-..|++.-|-.. .+....+
T Consensus       176 ~dlsl~V~~~~~~~---------------~~v~s~p-~t--~~~Tav~W-SprGKQl~iG~nnGt~vQy~P~-leik~~i  235 (1405)
T KOG3630|consen  176 SDLSLRVKSTKQLA---------------QNVTSFP-VT--NSQTAVLW-SPRGKQLFIGRNNGTEVQYEPS-LEIKSEI  235 (1405)
T ss_pred             cccchhhhhhhhhh---------------hhhcccC-cc--cceeeEEe-ccccceeeEecCCCeEEEeecc-cceeecc
Confidence            79999988775320               1222222 12  23899999 9999999999999999888754 4444444


Q ss_pred             ecC----ccceEEEEEcCCCCeEEE
Q 021484          187 VGD----RHVVNQLEPHPHIPMFAT  207 (312)
Q Consensus       187 ~~~----~~~v~~~~~~p~~~~l~t  207 (312)
                      .+.    ...|.+|.|-....+++.
T Consensus       236 p~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  236 PEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             cCCCcCCCcceeEEEEecceeEEEE
Confidence            321    367899999777666443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.86  E-value=0.24  Score=27.15  Aligned_cols=31  Identities=13%  Similarity=0.043  Sum_probs=25.3

Q ss_pred             cceEEEEEcCCCC---eEEEEeCCCcEEEccCCC
Q 021484          191 HVVNQLEPHPHIP---MFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       191 ~~v~~~~~~p~~~---~l~t~~~d~~i~iwd~~~  221 (312)
                      +.|.++.|+|...   +|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999998654   677777789999999985

It contains a characteristic DLL sequence motif.

>PRK13684 Ycf48-like protein; Provisional

Probab=93.77  E-value=3.6  Score=34.65  Aligned_cols=155  Identities=12%  Similarity=0.078  Sum_probs=84.2

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEE-EccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVY-DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d  108 (312)
                      ...+.++.+.|++ .+++++ ..|.+..- +-....+             ..  ....-...++++.+.+++..++.+..
T Consensus       172 ~g~~~~i~~~~~g-~~v~~g-~~G~i~~s~~~gg~tW-------------~~--~~~~~~~~l~~i~~~~~g~~~~vg~~  234 (334)
T PRK13684        172 AGVVRNLRRSPDG-KYVAVS-SRGNFYSTWEPGQTAW-------------TP--HQRNSSRRLQSMGFQPDGNLWMLARG  234 (334)
T ss_pred             cceEEEEEECCCC-eEEEEe-CCceEEEEcCCCCCeE-------------EE--eeCCCcccceeeeEcCCCCEEEEecC
Confidence            4568889999976 555554 45655431 2111111             11  11223467889999999998888877


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  188 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  188 (312)
                      |.+++=....+.             +.+... .........+..+.+ .+++..+++ +.+|.+. .....++.-.....
T Consensus       235 G~~~~~s~d~G~-------------sW~~~~-~~~~~~~~~l~~v~~-~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~  297 (334)
T PRK13684        235 GQIRFNDPDDLE-------------SWSKPI-IPEITNGYGYLDLAY-RTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPV  297 (334)
T ss_pred             CEEEEccCCCCC-------------cccccc-CCccccccceeeEEE-cCCCCEEEE-cCCCeEE-EeCCCCCCCeECCc
Confidence            776532233320             001111 110001122778888 777775554 4567664 34454544333321


Q ss_pred             ---CccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          189 ---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       189 ---~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                         -....+.+.|..+++.+++| ..|.|--|+-
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~~  330 (334)
T PRK13684        298 GEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYVG  330 (334)
T ss_pred             CCCCCcceEEEEEeCCCceEEEC-CCceEEEecC
Confidence               22357788888777776655 5788877764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.55  E-value=4.2  Score=34.62  Aligned_cols=171  Identities=12%  Similarity=0.178  Sum_probs=77.5

Q ss_pred             ecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeC---CC-eEEEEEccCCeecCCCCCCCCccccc
Q 021484            4 FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS---DE-YARVYDIRKCHWYSPISSDTPVDTFC   79 (312)
Q Consensus         4 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~---dg-~i~iwd~~~~~~~~~~~~~~~~~~~~   79 (312)
                      .|+.+++...++..            ..-+.-+-|+|..+.+|+-+.+   +. .-|||-+++..-        ....  
T Consensus       173 idl~tG~~~~v~~~------------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~--------~~~~--  230 (386)
T PF14583_consen  173 IDLKTGERKVVFED------------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS--------NVKK--  230 (386)
T ss_dssp             EETTT--EEEEEEE------------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----------EE--
T ss_pred             EECCCCceeEEEec------------CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC--------ccee--
Confidence            45666655455443            2236778999988777777543   33 236776654320        0000  


Q ss_pred             ccccccCCCccEEEEEEccCCCeEEE-e--c---CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEE
Q 021484           80 PRHLIGKNNIHITGLAYSNTSELLIS-Y--N---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  153 (312)
Q Consensus        80 ~~~~~~~~~~~i~~~~~~~~~~~l~s-~--~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v  153 (312)
                      ...  ......+.---|.|+|..+.- +  .   +..|.-+|+.++                +......  ...  ....
T Consensus       231 v~~--~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~----------------~~~~~~~--~p~--~~H~  288 (386)
T PF14583_consen  231 VHR--RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG----------------ERRRLME--MPW--CSHF  288 (386)
T ss_dssp             SS-----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT------------------EEEEEE--E-S--EEEE
T ss_pred             eec--CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC----------------CceEEEe--CCc--eeee
Confidence            000  111344555568999974332 2  1   334666677665                2222111  111  2233


Q ss_pred             EEecCCCCEEEEeccC----------------ceEEEEeccCCeeEEEe---------ecCcc-ceEEEEEcCCCCe-EE
Q 021484          154 NFFGPNDEYVMSGSDC----------------GHLFIWKKKGGKLVRLM---------VGDRH-VVNQLEPHPHIPM-FA  206 (312)
Q Consensus       154 ~~~s~~~~~l~~~~~d----------------g~v~iwd~~~~~~~~~~---------~~~~~-~v~~~~~~p~~~~-l~  206 (312)
                      .- ++++++++-=+.|                ..|+++++..++.....         .++.. .=-.+.|+||+++ |.
T Consensus       289 ~s-s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF  367 (386)
T PF14583_consen  289 MS-SPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLF  367 (386)
T ss_dssp             EE--TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEE
T ss_pred             EE-cCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEE
Confidence            33 7888877643332                24667787766543211         11111 1135789999998 55


Q ss_pred             EEeCCCcEEEccC
Q 021484          207 TCGIEKTVKLWAP  219 (312)
Q Consensus       207 t~~~d~~i~iwd~  219 (312)
                      ++...|...||-+
T Consensus       368 ~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  368 RSDMEGPPAVYLV  380 (386)
T ss_dssp             EE-TTSS-EEEEE
T ss_pred             ECCCCCCccEEEE
Confidence            6667887777643

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.53  E-value=3.7  Score=33.93  Aligned_cols=109  Identities=14%  Similarity=0.181  Sum_probs=58.1

Q ss_pred             CCccEEEEEEccCCCeEEEecCCcEE-EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021484           87 NNIHITGLAYSNTSELLISYNDELVY-LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  165 (312)
Q Consensus        87 ~~~~i~~~~~~~~~~~l~s~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~  165 (312)
                      -...+..+.-+++|++++.+..|.++ -|+....                 .-+... ......|..+.| .+++.+.+.
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-----------------~w~~~~-r~~~~riq~~gf-~~~~~lw~~  203 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-----------------TWQPHN-RNSSRRIQSMGF-SPDGNLWML  203 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-----------------S-EEEE---SSS-EEEEEE--TTS-EEEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCc-----------------cceEEc-cCccceehhcee-cCCCCEEEE
Confidence            34678888899999999998877665 6665321                 111111 112245999999 899887665


Q ss_pred             eccCceEEEEe-ccCCeeEEE----eecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484          166 GSDCGHLFIWK-KKGGKLVRL----MVGDRHVVNQLEPHPHIPMFATCGIEKTVKL  216 (312)
Q Consensus       166 ~~~dg~v~iwd-~~~~~~~~~----~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~i  216 (312)
                      + ..|.|++=+ ....+....    +....-.+.+++|.+++...++|+ .|++..
T Consensus       204 ~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~  257 (302)
T PF14870_consen  204 A-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV  257 (302)
T ss_dssp             E-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE
T ss_pred             e-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE
Confidence            5 788888877 222222111    111223478999999988888776 444433

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.49  E-value=1.1  Score=39.15  Aligned_cols=72  Identities=15%  Similarity=0.126  Sum_probs=49.4

Q ss_pred             eeEEEEecCCCCEEEEeccCceEEEEe---------ccCCeeEE---Eee------cCc--cceEEEEEcCCC---CeEE
Q 021484          150 VKGVNFFGPNDEYVMSGSDCGHLFIWK---------KKGGKLVR---LMV------GDR--HVVNQLEPHPHI---PMFA  206 (312)
Q Consensus       150 v~~v~~~s~~~~~l~~~~~dg~v~iwd---------~~~~~~~~---~~~------~~~--~~v~~~~~~p~~---~~l~  206 (312)
                      |..+.. ++.|..++..+.+|.+.++=         +.+|++..   ++.      ...  -.+..++|||+.   ..+.
T Consensus       106 V~~vl~-s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  106 VYQVLL-SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEe-cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            667776 89999999999999876654         22343321   111      111  235678999986   4577


Q ss_pred             EEeCCCcEEEccCCCC
Q 021484          207 TCGIEKTVKLWAPMPT  222 (312)
Q Consensus       207 t~~~d~~i~iwd~~~~  222 (312)
                      .-+.|.+||+||+...
T Consensus       185 iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEecCcEEEEEecCCc
Confidence            7788999999998754

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.00  E-value=3.3  Score=34.88  Aligned_cols=111  Identities=14%  Similarity=0.306  Sum_probs=56.7

Q ss_pred             cEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC---CCEEEEe
Q 021484           90 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---DEYVMSG  166 (312)
Q Consensus        90 ~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~---~~~l~~~  166 (312)
                      ..++|+|.|+|+++++-..|.|++++.......     .   +..  .........  .-+..+++ +|+   ..+|...
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~-----~---v~~--~~~v~~~~~--~gllgia~-~p~f~~n~~lYv~   69 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKT-----P---VAD--LPEVFADGE--RGLLGIAF-HPDFASNGYLYVY   69 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETTTEECE-----E---EEE---TTTBTSTT--BSEEEEEE--TTCCCC-EEEEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcc-----e---ecc--ccccccccc--CCccccee-ccccCCCCEEEEE
Confidence            457899999999999878999999993322000     0   000  001111122  23789998 673   3344333


Q ss_pred             cc-C--------ceEEEEeccCC-------eeE-EEeec---CccceEEEEEcCCCCeEEEEeCCCc
Q 021484          167 SD-C--------GHLFIWKKKGG-------KLV-RLMVG---DRHVVNQLEPHPHIPMFATCGIEKT  213 (312)
Q Consensus       167 ~~-d--------g~v~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~~p~~~~l~t~~~d~~  213 (312)
                      .. .        ..|.-|....+       +.+ ..+..   ....-..|.|.|+|.+.++.+..+.
T Consensus        70 ~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   70 YTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred             EEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence            32 1        23444444333       111 12222   2234567999999987666664433

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=92.99  E-value=9  Score=36.84  Aligned_cols=106  Identities=8%  Similarity=0.022  Sum_probs=64.5

Q ss_pred             EEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEE
Q 021484           94 LAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF  173 (312)
Q Consensus        94 ~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~  173 (312)
                      .+..|...++.++-...+++|++...                ++++......-+..|+.+.+   .+..+++|...-.+.
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K----------------~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~  999 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKK----------------KLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVH  999 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChH----------------HHHhhhhhccCceEEEEEee---cceEEEEeeccceEE
Confidence            35567777888888899999999876                55554443333345888876   466777777655555


Q ss_pred             EE--eccCCeeEEEeecCc--cceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484          174 IW--KKKGGKLVRLMVGDR--HVVNQLEPHPHIPMFATCGIEKTVKLWAPM  220 (312)
Q Consensus       174 iw--d~~~~~~~~~~~~~~--~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  220 (312)
                      ++  +....+. ..+....  ..|+++.+ -+...+|.+..=|.+.+-.+.
T Consensus      1000 ~~~y~~~~n~l-~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1000 FVRYRREDNQL-IVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             EEEEecCCCeE-EEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECC
Confidence            54  4443443 3443222  24554443 355567777666666666544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.77  E-value=2.3  Score=38.77  Aligned_cols=108  Identities=11%  Similarity=0.139  Sum_probs=66.2

Q ss_pred             eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee-cCccceEEEEEc--CCCCeEEEEeCCCcEEEccCCC-----
Q 021484          150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPH--PHIPMFATCGIEKTVKLWAPMP-----  221 (312)
Q Consensus       150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~--p~~~~l~t~~~d~~i~iwd~~~-----  221 (312)
                      ..-+.- +.-++..++-+....+.|||.+.+.....-. ...+.|.++.|.  |+++.+++.|....|.+|.-..     
T Consensus        32 ~~li~g-ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   32 PSLISG-SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             cceEee-cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            444444 4456666666667789999999887543322 345789999985  7888888999999999986321     


Q ss_pred             C--C---C--CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          222 T--D---F--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       222 ~--~---~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      .  .   +  ..+..++...+....|..++.++++.  ++.+.|++
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d  154 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD  154 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence            1  1   1  11223343334445566666666554  44455554

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.71  E-value=3.6  Score=35.20  Aligned_cols=104  Identities=18%  Similarity=0.292  Sum_probs=55.3

Q ss_pred             ccEEEEEEccCCCeEEEec------------CC-cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE
Q 021484           89 IHITGLAYSNTSELLISYN------------DE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  155 (312)
Q Consensus        89 ~~i~~~~~~~~~~~l~s~~------------d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  155 (312)
                      .....|+|.++|+++++..            .+ .|.+++-.++.+..            .....+.....  ....+++
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~------------d~~~vfa~~l~--~p~Gi~~   79 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY------------DKSNVFAEELS--MVTGLAV   79 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc------------ceeEEeecCCC--CccceeE
Confidence            3456889999999877742            22 67766544321100            12233332222  2678888


Q ss_pred             ecCCCCEEEEeccCceEEEEeccC-----Cee--E-EEeec----CccceEEEEEcCCCCeEEEEe
Q 021484          156 FGPNDEYVMSGSDCGHLFIWKKKG-----GKL--V-RLMVG----DRHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       156 ~s~~~~~l~~~~~dg~v~iwd~~~-----~~~--~-~~~~~----~~~~v~~~~~~p~~~~l~t~~  209 (312)
                       .+++  |+++......++.|...     ++.  + ..+..    +......++|.|+|.+.++.+
T Consensus        80 -~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        80 -AVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             -ecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence             6777  44444443333445431     121  2 22222    124467899999998865544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.41  E-value=5.9  Score=33.28  Aligned_cols=180  Identities=16%  Similarity=0.180  Sum_probs=89.6

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCe------EEEEEccCCeecCCCCCCCCcccccccccccC-------CCccEEEEEE
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEY------ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-------NNIHITGLAY   96 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~   96 (312)
                      -+.+..+.+.|++ ..+++.+.+|.      +..+++....-     ....+.......+...       ..-..-+|++
T Consensus        19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~   92 (326)
T PF13449_consen   19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQG-----GIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV   92 (326)
T ss_pred             cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCC-----CccceEeccceeccCCCCCcCCcCCCChhHeEE
Confidence            4678999999766 45666677777      66556553110     0000100000011000       0113447888


Q ss_pred             ccCCCeEEEec-C------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-
Q 021484           97 SNTSELLISYN-D------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-  168 (312)
Q Consensus        97 ~~~~~~l~s~~-d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-  168 (312)
                      .++|.++++.. +      ..|+.++.. +.......++..-.......   .+.....-..++++ +|+|+.|+++.+ 
T Consensus        93 ~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~---~~~~~N~G~E~la~-~~dG~~l~~~~E~  167 (326)
T PF13449_consen   93 PPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGT---SGRRNNRGFEGLAV-SPDGRTLFAAMES  167 (326)
T ss_pred             ecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCcc---ccccCCCCeEEEEE-CCCCCEEEEEECc
Confidence            78888888874 6      778888876 31100000110000000000   11112223889998 999997666543 


Q ss_pred             ----Cc--e-------EEE--EeccC-CeeEEEe----ec-----CccceEEEEEcCCCCeEEEE-----eCCCcEEEcc
Q 021484          169 ----CG--H-------LFI--WKKKG-GKLVRLM----VG-----DRHVVNQLEPHPHIPMFATC-----GIEKTVKLWA  218 (312)
Q Consensus       169 ----dg--~-------v~i--wd~~~-~~~~~~~----~~-----~~~~v~~~~~~p~~~~l~t~-----~~d~~i~iwd  218 (312)
                          |+  .       +++  ||..+ ++....+    ..     ....|+.+.+-+++++++.=     .....++|+.
T Consensus       168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~  247 (326)
T PF13449_consen  168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR  247 (326)
T ss_pred             cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence                22  1       444  45544 3232222    21     34578899999999875432     1234555555


Q ss_pred             CC
Q 021484          219 PM  220 (312)
Q Consensus       219 ~~  220 (312)
                      +.
T Consensus       248 v~  249 (326)
T PF13449_consen  248 VD  249 (326)
T ss_pred             EE
Confidence            43

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.36  E-value=1.3  Score=33.34  Aligned_cols=31  Identities=16%  Similarity=0.105  Sum_probs=25.5

Q ss_pred             cceEEEEEcCCC------CeEEEEeCCCcEEEccCCC
Q 021484          191 HVVNQLEPHPHI------PMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       191 ~~v~~~~~~p~~------~~l~t~~~d~~i~iwd~~~  221 (312)
                      ..|..++|||.|      -+|++...++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478899999965      2488888999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.32  E-value=5  Score=32.26  Aligned_cols=130  Identities=15%  Similarity=0.168  Sum_probs=80.1

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP  122 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~  122 (312)
                      .++...-.++...+||..+.+..         ..|.     .  ...=..++  .+++.|+.+ ....++.+|..+.   
T Consensus       101 ~l~qLTWk~~~~f~yd~~tl~~~---------~~~~-----y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f---  159 (264)
T PF05096_consen  101 KLYQLTWKEGTGFVYDPNTLKKI---------GTFP-----Y--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF---  159 (264)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEE---------EEEE--------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT----
T ss_pred             EEEEEEecCCeEEEEccccceEE---------EEEe-----c--CCcceEEE--cCCCEEEEECCccceEEECCccc---
Confidence            56777778999999999887632         1111     1  12234555  566655555 5889999998765   


Q ss_pred             CCCcCCcccccCCCCCceEecccCCc---eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec-----------
Q 021484          123 SPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-----------  188 (312)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----------  188 (312)
                                   +..+.+.......   .+.-+.|.  +|...|=.-....|...|..+|+.+..+..           
T Consensus       160 -------------~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~  224 (264)
T PF05096_consen  160 -------------KEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDK  224 (264)
T ss_dssp             -------------SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTT
T ss_pred             -------------ceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccc
Confidence                         4444444333222   26667773  677667666778899999999998876631           


Q ss_pred             -C---ccceEEEEEcCCCCeEEEEe
Q 021484          189 -D---RHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       189 -~---~~~v~~~~~~p~~~~l~t~~  209 (312)
                       +   ..-.+.+++.|..+.|...+
T Consensus       225 ~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  225 SRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             cccccCCeeEeEeEeCCCCEEEEEe
Confidence             0   23468999999877754444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.06  E-value=5.7  Score=32.32  Aligned_cols=117  Identities=9%  Similarity=0.117  Sum_probs=75.7

Q ss_pred             CCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021484           87 NNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  165 (312)
Q Consensus        87 ~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~  165 (312)
                      -...+.+++|+|+.+.|.+. ....-.++=...+                +.++++.-..- .....+.| -.++++.++
T Consensus        84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G----------------dlirtiPL~g~-~DpE~Iey-ig~n~fvi~  145 (316)
T COG3204          84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG----------------DLIRTIPLTGF-SDPETIEY-IGGNQFVIV  145 (316)
T ss_pred             ccccccceeeCCCcceEEEecCCCceEEEEecCC----------------ceEEEeccccc-CChhHeEE-ecCCEEEEE
Confidence            34559999999999866664 5444444433334                45555542211 11456777 677888888


Q ss_pred             eccCceEEEEeccCCeeEE-------Eee--cC-ccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          166 GSDCGHLFIWKKKGGKLVR-------LMV--GD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       166 ~~~dg~v~iwd~~~~~~~~-------~~~--~~-~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                      --.++.+.++.+.....+.       .+.  .+ +...-.++|.|..+.|..+=+-.=++||....
T Consensus       146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~  211 (316)
T COG3204         146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ  211 (316)
T ss_pred             ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence            8889999998766442211       111  12 45677899999999888887777777776553

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=91.41  E-value=6.7  Score=31.83  Aligned_cols=205  Identities=11%  Similarity=0.052  Sum_probs=101.8

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCC-CCCcccccccccccCCCccEEEEE--EccCC-CeEEEe
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-DTPVDTFCPRHLIGKNNIHITGLA--YSNTS-ELLISY  106 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~-~~l~s~  106 (312)
                      .+|..+...|+- +.+++- .|+.++++++..-........ ..+... ..... ......+...+  -...+ ..|+.+
T Consensus        36 ~~I~ql~vl~~~-~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~-~~~~~-~~~~~~v~~f~~~~~~~~~~~L~va  111 (275)
T PF00780_consen   36 SSITQLSVLPEL-NLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSR-SLPTK-LPETKGVSFFAVNGGHEGSRRLCVA  111 (275)
T ss_pred             ceEEEEEEeccc-CEEEEE-cCCccEEEEchhhccccccccccccccc-ccccc-ccccCCeeEEeeccccccceEEEEE
Confidence            358999998876 444443 359999999986653221100 000000 00000 11123344444  11222 466777


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCC-CCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKR-EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                      ....|.+|......            ... +..+.+.-.   ..+..++| .  ++.++.|.. ....+.|+.++.....
T Consensus       112 ~kk~i~i~~~~~~~------------~~f~~~~ke~~lp---~~~~~i~~-~--~~~i~v~~~-~~f~~idl~~~~~~~l  172 (275)
T PF00780_consen  112 VKKKILIYEWNDPR------------NSFSKLLKEISLP---DPPSSIAF-L--GNKICVGTS-KGFYLIDLNTGSPSEL  172 (275)
T ss_pred             ECCEEEEEEEECCc------------ccccceeEEEEcC---CCcEEEEE-e--CCEEEEEeC-CceEEEecCCCCceEE
Confidence            77788888876531            001 122333322   34889998 3  667777764 4477889887765443


Q ss_pred             eecC------------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC--CCCCChhhhhhhhccCCCCceeEEec
Q 021484          186 MVGD------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP--PLPDNAEKIMKANKQGREDHSRITLT  251 (312)
Q Consensus       186 ~~~~------------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~  251 (312)
                      +...            ..++..+.. +++.+|+.-  |..-.+-|..+....  .+. -.........   ...++++..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~-W~~~p~~~~~---~~pyli~~~  245 (275)
T PF00780_consen  173 LDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPSRKSTIQ-WSSAPQSVAY---SSPYLIAFS  245 (275)
T ss_pred             eCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcCcccEEE-cCCchhEEEE---ECCEEEEEC
Confidence            3211            112333333 344454432  334444444443222  111 0111111121   234888888


Q ss_pred             CCceEEEEEecccCc
Q 021484          252 PDVIMHVLRLQRRQT  266 (312)
Q Consensus       252 ~d~~i~i~~~~~~~~  266 (312)
                      .++ +.|+++.+.+.
T Consensus       246 ~~~-iEV~~~~~~~l  259 (275)
T PF00780_consen  246 SNS-IEVRSLETGEL  259 (275)
T ss_pred             CCE-EEEEECcCCcE
Confidence            866 99999887743

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.41  E-value=1.3  Score=23.79  Aligned_cols=40  Identities=8%  Similarity=0.046  Sum_probs=27.2

Q ss_pred             CCCCEEEEe-ccCceEEEEeccCCeeEEEeecCccceEEEEE
Q 021484          158 PNDEYVMSG-SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP  198 (312)
Q Consensus       158 ~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~  198 (312)
                      |++++|+++ ..++.|.++|..+++.+..+.... ....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~-~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG-YPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC-CCceEEe
Confidence            456666554 458899999999998888776532 2344544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.40  E-value=3.8  Score=35.39  Aligned_cols=120  Identities=11%  Similarity=0.114  Sum_probs=70.3

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecC
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND  108 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d  108 (312)
                      -+++|.++.|++++ +.+|+--.+.+|.+++....+....           ..+..+..+..|....|+.+.. +|--.+
T Consensus        65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~-----------~~~~ck~k~~~IlGF~W~~s~e-~A~i~~  131 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLE-----------YTQECKTKNANILGFCWTSSTE-IAFITD  131 (657)
T ss_pred             CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhH-----------HHHHhccCcceeEEEEEecCee-EEEEec
Confidence            35699999999999 8999999999999999854431000           0000023345688999988754 333334


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec--cCceEEEEeccC
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKG  179 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~--~dg~v~iwd~~~  179 (312)
                      .-+-+|......               ..++..+.+...  |.--.| .++-+.++.++  ..+.+.-+.+++
T Consensus       132 ~G~e~y~v~pek---------------rslRlVks~~~n--vnWy~y-c~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  132 QGIEFYQVLPEK---------------RSLRLVKSHNLN--VNWYMY-CPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             CCeEEEEEchhh---------------hhhhhhhhcccC--ccEEEE-ccccceEeeeccccccccccEEEee
Confidence            445555543321               244444555544  666667 56665544333  344444444443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.36  E-value=0.031  Score=47.78  Aligned_cols=147  Identities=14%  Similarity=0.160  Sum_probs=97.9

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e-cCCc
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDEL  110 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~  110 (312)
                      .....|-|.+. -++.++.+..+..||-.... +..                ...+.....++|..++..++. + ..+.
T Consensus        37 pi~~~w~~e~~-nlavaca~tiv~~YD~agq~-~le----------------~n~tg~aldm~wDkegdvlavlAek~~p   98 (615)
T KOG2247|consen   37 PIIHRWRPEGH-NLAVACANTIVIYYDKAGQV-ILE----------------LNPTGKALDMAWDKEGDVLAVLAEKTGP   98 (615)
T ss_pred             cceeeEecCCC-ceehhhhhhHHHhhhhhcce-ecc----------------cCCchhHhhhhhccccchhhhhhhcCCC
Confidence            34567788874 47778888889999965332 111                122445567888888875554 4 5899


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  189 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  189 (312)
                      +++||+.+.                 -.+.+. +....  -.-+.| ++....++.+...|.+.+++..+.+.+-..-.|
T Consensus        99 iylwd~n~e-----------------ytqqLE~gg~~s--~sll~w-sKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh  158 (615)
T KOG2247|consen   99 IYLWDVNSE-----------------YTQQLESGGTSS--KSLLAW-SKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKH  158 (615)
T ss_pred             eeechhhhh-----------------hHHHHhccCcch--HHHHhh-ccCCccccccccccceEEEeccchhhhhhhccc
Confidence            999999875                 222222 11111  122566 888999999999999999998887766555448


Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021484          190 RHVVNQLEPHPHIPMFATCGIEKTVKLWA  218 (312)
Q Consensus       190 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd  218 (312)
                      ..+++++++.+.+.. +.++.|..+.+-.
T Consensus       159 ~RRgtq~av~lEd~v-il~dcd~~L~v~~  186 (615)
T KOG2247|consen  159 QRRGTQIAVTLEDYV-ILCDCDNTLSVTT  186 (615)
T ss_pred             ccceeEEEeccccee-eecCcHHHHHHhh
Confidence            889999999988644 4444455444433

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.25  E-value=2.9  Score=37.27  Aligned_cols=71  Identities=10%  Similarity=0.081  Sum_probs=43.4

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--cCCcE
Q 021484           34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELV  111 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i  111 (312)
                      ..+.|||.. .+|++-.....-.+++++....             .++.- ....+-|.|.+|.+||+.|+.+  +.=.-
T Consensus       116 QGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~s-------------rVkaD-i~~~G~IhCACWT~DG~RLVVAvGSsLHS  180 (671)
T PF15390_consen  116 QGCVWHPKK-AILTVLTARDVSVLPSVHCDSS-------------RVKAD-IKTSGLIHCACWTKDGQRLVVAVGSSLHS  180 (671)
T ss_pred             CcccccCCC-ceEEEEecCceeEeeeeeeCCc-------------eEEEe-ccCCceEEEEEecCcCCEEEEEeCCeEEE
Confidence            467899987 4655544433333466654321             11111 2336789999999999866654  45567


Q ss_pred             EEEEcCCC
Q 021484          112 YLFEKNMG  119 (312)
Q Consensus       112 ~iwd~~~~  119 (312)
                      ++||-...
T Consensus       181 yiWd~~qK  188 (671)
T PF15390_consen  181 YIWDSAQK  188 (671)
T ss_pred             EEecCchh
Confidence            89986543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.12  E-value=5.9  Score=30.67  Aligned_cols=103  Identities=10%  Similarity=0.075  Sum_probs=62.2

Q ss_pred             CeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC---c---eEEE
Q 021484          101 ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---G---HLFI  174 (312)
Q Consensus       101 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---g---~v~i  174 (312)
                      .++++.....|.+|++....              .++...|..-   +.|..+.+ +..|+||++--.+   .   .+++
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~--------------~~~~~~F~Tv---~~V~~l~y-~~~GDYlvTlE~k~~~~~~~fvR~   91 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEE--------------CPLLCTFSTV---GRVLQLVY-SEAGDYLVTLEEKNKRSPVDFVRA   91 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCC--------------CceeEEEcch---hheeEEEe-ccccceEEEEEeecCCccceEEEE
Confidence            35455677889999998431              1344444433   33889998 8999999986432   2   5666


Q ss_pred             E-eccC----CeeEE-EeecC---------------------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          175 W-KKKG----GKLVR-LMVGD---------------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       175 w-d~~~----~~~~~-~~~~~---------------------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                      | +++.    .+++. .+.+|                     ..++.+++..|...-|+.|+ ++++.+|.+..+
T Consensus        92 Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen   92 YFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence            5 2221    12222 11121                     23567788888655555555 578999987654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.10  E-value=5.9  Score=30.66  Aligned_cols=48  Identities=23%  Similarity=0.315  Sum_probs=32.1

Q ss_pred             EEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           45 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        45 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .|..+...+.|.+|++....+       .+...|       ..-+.|..+.++..|.+|++-
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~-------~~~~~F-------~Tv~~V~~l~y~~~GDYlvTl   77 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEEC-------PLLCTF-------STVGRVLQLVYSEAGDYLVTL   77 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCC-------ceeEEE-------cchhheeEEEeccccceEEEE
Confidence            343436668899999984431       111111       224778999999999999995

>PRK13684 Ycf48-like protein; Provisional

Probab=91.07  E-value=8.6  Score=32.45  Aligned_cols=107  Identities=11%  Similarity=0.000  Sum_probs=60.2

Q ss_pred             ccEEEEEEccCCCeEEEecCCcEEEE-EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec
Q 021484           89 IHITGLAYSNTSELLISYNDELVYLF-EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  167 (312)
Q Consensus        89 ~~i~~~~~~~~~~~l~s~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~  167 (312)
                      ..+..+.+.|++.+++++..|.++.- +-. +                +.-...... ....+..+.+ .++++.++++ 
T Consensus       173 g~~~~i~~~~~g~~v~~g~~G~i~~s~~~g-g----------------~tW~~~~~~-~~~~l~~i~~-~~~g~~~~vg-  232 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSSRGNFYSTWEPG-Q----------------TAWTPHQRN-SSRRLQSMGF-QPDGNLWMLA-  232 (334)
T ss_pred             ceEEEEEECCCCeEEEEeCCceEEEEcCCC-C----------------CeEEEeeCC-CcccceeeeE-cCCCCEEEEe-
Confidence            45777888888877777777766542 211 1                111111111 1134888888 7888877665 


Q ss_pred             cCceEEEEeccCCeeEEEeecC----ccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484          168 DCGHLFIWKKKGGKLVRLMVGD----RHVVNQLEPHPHIPMFATCGIEKTVKL  216 (312)
Q Consensus       168 ~dg~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~p~~~~l~t~~~d~~i~i  216 (312)
                      ..|.+++=..+.+..-.....+    ...+..+.+.|++..++++ .+|.|..
T Consensus       233 ~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~  284 (334)
T PRK13684        233 RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV  284 (334)
T ss_pred             cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE
Confidence            4576653234444432222211    2357788999987765544 5676654

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=90.97  E-value=12  Score=35.71  Aligned_cols=120  Identities=8%  Similarity=0.044  Sum_probs=72.2

Q ss_pred             CCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484          137 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL  216 (312)
Q Consensus       137 ~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~i  216 (312)
                      .++....+.-.+.+.++.-  -+|+++|.-  ...|++|++.+.+.++.--.|..++..+...-.+..++.|..-+.+.+
T Consensus       819 ~L~~v~e~~v~Gav~aL~~--fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl  894 (1096)
T KOG1897|consen  819 SLELVAETVVKGAVYALVE--FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL  894 (1096)
T ss_pred             ceeeeeeeeeccceeehhh--hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence            4444443433333555543  367777654  468999999887666655567778888888889999999998888877


Q ss_pred             ccCCCCC--CCCCCC--ChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          217 WAPMPTD--FPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       217 wd~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      -..+..+  ...+..  +..++.+.  ..-+.+..+-+..++.+.+....
T Consensus       895 l~y~~~eg~f~evArD~~p~Wmtav--eil~~d~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  895 LQYKGDEGNFEEVARDYNPNWMTAV--EILDDDTYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             EEEeccCCceEEeehhhCccceeeE--EEecCceEEeecccccEEEEEec
Confidence            6655544  322211  22222221  11234445555566666666543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.69  E-value=5.8  Score=38.94  Aligned_cols=160  Identities=11%  Similarity=0.086  Sum_probs=86.5

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEE--------EccCCC-eEE
Q 021484           34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA--------YSNTSE-LLI  104 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~-~l~  104 (312)
                      ..|-+-|.-++.-+  +.|..+.+|+..++......               .+-...|..+.        |.|.=+ .|+
T Consensus        82 ~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~---------------d~~shtIl~V~LvkPkpgvFv~~IqhlLv  144 (1311)
T KOG1900|consen   82 TDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEY---------------DGLSHTILKVGLVKPKPGVFVPEIQHLLV  144 (1311)
T ss_pred             eeeccchhhcceEE--EeCCeEEEEEcCCCCccccc---------------cchhhhheeeeeecCCCCcchhhhheeEE
Confidence            34444454323333  35789999999985421111               22223333332        223223 444


Q ss_pred             EecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc--C---
Q 021484          105 SYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK--G---  179 (312)
Q Consensus       105 s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~--~---  179 (312)
                      .+.--.|.++-+.-...+....         .....++-..++..|.++.+ ..+|+.+++|- ||.|+-.-..  .   
T Consensus       145 vaT~~ei~ilgV~~~~~~~~~~---------~f~~~~~i~~dg~~V~~I~~-t~nGRIF~~G~-dg~lyEl~Yq~~~gWf  213 (1311)
T KOG1900|consen  145 VATPVEIVILGVSFDEFTGELS---------IFNTSFKISVDGVSVNCITY-TENGRIFFAGR-DGNLYELVYQAEDGWF  213 (1311)
T ss_pred             ecccceEEEEEEEeccccCccc---------ccccceeeecCCceEEEEEe-ccCCcEEEeec-CCCEEEEEEeccCchh
Confidence            4556666666554321110000         01111222233345899997 88888877765 4544322111  1   


Q ss_pred             Ce-e----------------EEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          180 GK-L----------------VRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       180 ~~-~----------------~~~~~-~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                      ++ +                +..+. .+..+|..+........+.+-+..++|++|++..
T Consensus       214 ~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  214 GSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            11 1                11223 4567899999988888899999999999999876

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.34  E-value=14  Score=33.54  Aligned_cols=72  Identities=8%  Similarity=0.078  Sum_probs=46.5

Q ss_pred             EEEEecCCCCEEEEeccC-----c-----------eEEEEeccCCeeEEEeecCccce---------EEEEEcCCCC---
Q 021484          152 GVNFFGPNDEYVMSGSDC-----G-----------HLFIWKKKGGKLVRLMVGDRHVV---------NQLEPHPHIP---  203 (312)
Q Consensus       152 ~v~~~s~~~~~l~~~~~d-----g-----------~v~iwd~~~~~~~~~~~~~~~~v---------~~~~~~p~~~---  203 (312)
                      ..++ ++...+++.+...     +           .|.-.|+++|+..-.++.....+         .-+....+|+   
T Consensus       238 ~~s~-D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~  316 (527)
T TIGR03075       238 TGSY-DPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRK  316 (527)
T ss_pred             ceeE-cCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEE
Confidence            3455 6666666655521     2           67788899999876665322211         1122334665   


Q ss_pred             eEEEEeCCCcEEEccCCCCCC
Q 021484          204 MFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       204 ~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      .++.+..+|.+.+.|..++++
T Consensus       317 ~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       317 LLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             EEEEeCCCceEEEEECCCCce
Confidence            578889999999999988764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.91  E-value=5.4  Score=28.29  Aligned_cols=122  Identities=11%  Similarity=0.097  Sum_probs=69.3

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc---CC--CeEEEecC
Q 021484           34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN---TS--ELLISYND  108 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~--~~l~s~~d  108 (312)
                      ..-+|....+ .|+.++.-|+|.|++.......... ...+++.+       .-...|++|+-.+   +.  ..|+.++.
T Consensus         2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~L-------Nin~~italaaG~l~~~~~~D~LliGt~   72 (136)
T PF14781_consen    2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR-QDSDISFL-------NINQEITALAAGRLKPDDGRDCLLIGTQ   72 (136)
T ss_pred             eEEEeCCCce-eEEEEecCCEEEEECCCcccccccc-ccCceeEE-------ECCCceEEEEEEecCCCCCcCEEEEecc
Confidence            3456777774 7888888899999998754321110 11122111       1245677776544   22  48888999


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe--cCCCCEEEEeccCceEEEEeccCCeeE
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF--GPNDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--s~~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                      ..+..||+....                - .-++.-.+.  |.++.+-  .....-|+..+....|.-||..-.+..
T Consensus        73 t~llaYDV~~N~----------------d-~Fyke~~DG--vn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   73 TSLLAYDVENNS----------------D-LFYKEVPDG--VNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             ceEEEEEcccCc----------------h-hhhhhCccc--eeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence            999999998761                1 112222333  5666551  222233444445667777776644433

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=89.76  E-value=19  Score=34.37  Aligned_cols=129  Identities=11%  Similarity=0.106  Sum_probs=74.6

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccc-cc-CCCccEEEEEEccCCCeEEEecC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IG-KNNIHITGLAYSNTSELLISYND  108 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~~~~~~~~~l~s~~d  108 (312)
                      .+..+++|+|.....||+....|...||++.......... -......+ ..+ .. .....-..|.|.++-..|+.++.
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~-~~~~~~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r  223 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSN-LRLSRNIS-GSIIFDPEELSNWKRILWVSDSNRLLVCNR  223 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcc-eeeccCCC-ccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence            4677899999877899999999999999992221100000 00000000 001 00 11234557889888888888888


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccC
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKG  179 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~  179 (312)
                      ..+.++|+.+.                .....+........|.++.- ++. ..+++.-+. ..|.+.++.+
T Consensus       224 ~~l~~~d~~~~----------------~~~~~l~~~~~~~~IlDv~~-~~~~~~~~FiLTs-~eiiw~~~~~  277 (765)
T PF10214_consen  224 SKLMLIDFESN----------------WQTEYLVTAKTWSWILDVKR-SPDNPSHVFILTS-KEIIWLDVKS  277 (765)
T ss_pred             CceEEEECCCC----------------CccchhccCCChhheeeEEe-cCCccceEEEEec-CeEEEEEccC
Confidence            99999999876                22111222222234777776 554 222222222 5676777665

These proteins are found in fungi.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.64  E-value=18  Score=33.80  Aligned_cols=123  Identities=9%  Similarity=-0.013  Sum_probs=69.2

Q ss_pred             cEEEEEEccCC--CeEEEe-cCCcEEEEEcCCCc-----C--CCCCcCCcccccCCCCCceEecccCCceeeEEEEec--
Q 021484           90 HITGLAYSNTS--ELLISY-NDELVYLFEKNMGL-----G--PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG--  157 (312)
Q Consensus        90 ~i~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s--  157 (312)
                      .|.-|....-|  ++|+.+ .||.|.+|.++.-.     .  .....   ..-...++-..+...   ..++++++ .  
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~---~~r~~i~P~f~~~v~---~SaWGLdI-h~~  174 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG---FSRLKIKPFFHLRVG---ASAWGLDI-HDY  174 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc---cccccCCCCeEeecC---CceeEEEE-Eec
Confidence            35555544433  355555 79999999874311     0  00000   000011122222222   23788988 5  


Q ss_pred             CCCCEEEEeccCceEEEEeccCC--eeE-EEeecCccceEEEEEcCCC-----C-eEEEEeCCCcEEEccC
Q 021484          158 PNDEYVMSGSDCGHLFIWKKKGG--KLV-RLMVGDRHVVNQLEPHPHI-----P-MFATCGIEKTVKLWAP  219 (312)
Q Consensus       158 ~~~~~l~~~~~dg~v~iwd~~~~--~~~-~~~~~~~~~v~~~~~~p~~-----~-~l~t~~~d~~i~iwd~  219 (312)
                      ...++||+++....|.||-+...  +.. ..-..|...|-+|+|-++.     . .+++++-.|.+-+|++
T Consensus       175 ~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  175 KKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             CcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            66788888888888888764431  111 1111255678888887654     2 6888889999888777

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=89.56  E-value=19  Score=34.20  Aligned_cols=67  Identities=12%  Similarity=-0.000  Sum_probs=49.3

Q ss_pred             ceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe----e-----------c----CccceEEEEEcCCCCeEEEE
Q 021484          148 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM----V-----------G----DRHVVNQLEPHPHIPMFATC  208 (312)
Q Consensus       148 ~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~----~-----------~----~~~~v~~~~~~p~~~~l~t~  208 (312)
                      +.|.++.. ..-+.+++.+..||+|.++|..+.+.+...    .           +    +-.++..++|||++-.++.-
T Consensus       260 ~~V~si~~-~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  260 KRVVSITS-PELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CeEEEEEe-cccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            34888876 667889999999999999998776544333    1           0    01133458899999999999


Q ss_pred             eCCCcEE
Q 021484          209 GIEKTVK  215 (312)
Q Consensus       209 ~~d~~i~  215 (312)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            9999865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=89.48  E-value=9.8  Score=30.63  Aligned_cols=108  Identities=14%  Similarity=0.045  Sum_probs=65.4

Q ss_pred             cEEEEEEccCCCeEEEec--CCc--EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021484           90 HITGLAYSNTSELLISYN--DEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  165 (312)
Q Consensus        90 ~i~~~~~~~~~~~l~s~~--d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~  165 (312)
                      .+.+.++++++..++.-.  ++.  ++++.....                 ....+.+.    .+..-.| ++++...+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-----------------~~~~~~g~----~l~~PS~-d~~g~~W~v   82 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-----------------VRPVLTGG----SLTRPSW-DPDGWVWTV   82 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-----------------ceeeccCC----ccccccc-cCCCCEEEE
Confidence            678899999998666532  444  555544322                 22222222    2778888 888887777


Q ss_pred             eccCceEEEEe-ccCCeeE-EEeec--CccceEEEEEcCCCCeEEEEe---CCCcEEEccC
Q 021484          166 GSDCGHLFIWK-KKGGKLV-RLMVG--DRHVVNQLEPHPHIPMFATCG---IEKTVKLWAP  219 (312)
Q Consensus       166 ~~~dg~v~iwd-~~~~~~~-~~~~~--~~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~  219 (312)
                      ...+....++. ..+++.. ..+..  -...|..+.+||+|..+|...   .++.|.+=-+
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen   83 DDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             EcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence            77666666663 2333221 12221  112899999999998866554   3567777644

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.33  E-value=4.3  Score=36.86  Aligned_cols=36  Identities=17%  Similarity=0.353  Sum_probs=28.0

Q ss_pred             eeEEEEecC----CCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          150 VKGVNFFGP----NDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       150 v~~v~~~s~----~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      +..++. +.    +..+|++.+.|+++++||+.+++++...
T Consensus       217 ~~~~~~-~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  217 AASLAV-SSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EEEEEE------ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             cceEEE-ecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            444554 44    6789999999999999999999996655

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=89.31  E-value=21  Score=34.26  Aligned_cols=153  Identities=10%  Similarity=0.097  Sum_probs=89.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeC----------CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC
Q 021484           32 RLNAIVIDPRNPNYFAVGGS----------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE  101 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  101 (312)
                      .|.++.|..+...++++|+.          .|.|.+|.+...+-         ++....    ..-.+.+.++.-- +|+
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~---------L~~v~e----~~v~Gav~aL~~f-ngk  841 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS---------LELVAE----TVVKGAVYALVEF-NGK  841 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc---------eeeeee----eeeccceeehhhh-CCe
Confidence            45566688774477777752          47788887776220         000000    0012333333211 344


Q ss_pred             eEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe
Q 021484          102 LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       102 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~  181 (312)
                       ++++-...|++|+..+.                +.++.-..+...  +..+.. ...+..+++|..-+.+.+...+..+
T Consensus       842 -llA~In~~vrLye~t~~----------------~eLr~e~~~~~~--~~aL~l-~v~gdeI~VgDlm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  842 -LLAGINQSVRLYEWTTE----------------RELRIECNISNP--IIALDL-QVKGDEIAVGDLMRSITLLQYKGDE  901 (1096)
T ss_pred             -EEEecCcEEEEEEcccc----------------ceehhhhcccCC--eEEEEE-EecCcEEEEeeccceEEEEEEeccC
Confidence             44555678999998776                455555566655  666665 6789999999998888776655433


Q ss_pred             --eEEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          182 --LVRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       182 --~~~~~~-~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                        ....-+ -+....+.+.+-.+..+ +.+..+|.+.+-..
T Consensus       902 g~f~evArD~~p~Wmtaveil~~d~y-lgae~~gNlf~v~~  941 (1096)
T KOG1897|consen  902 GNFEEVARDYNPNWMTAVEILDDDTY-LGAENSGNLFTVRK  941 (1096)
T ss_pred             CceEEeehhhCccceeeEEEecCceE-EeecccccEEEEEe
Confidence              332222 35566777776655444 44456677766543

>PRK10115 protease 2; Provisional

Probab=89.21  E-value=20  Score=33.77  Aligned_cols=113  Identities=15%  Similarity=0.226  Sum_probs=61.5

Q ss_pred             cceEEEEEcCCCCcEEEEE-eC----CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE-E
Q 021484           31 IRLNAIVIDPRNPNYFAVG-GS----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-I  104 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~-~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~  104 (312)
                      -.+..+.|+|++ ++|+.+ ..    ...|++.|+.+++..             +..+ ..   .-..++|.++++.| .
T Consensus       127 ~~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l-------------~~~i-~~---~~~~~~w~~D~~~~~y  188 (686)
T PRK10115        127 YTLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWY-------------PELL-DN---VEPSFVWANDSWTFYY  188 (686)
T ss_pred             EEEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCC-------------Cccc-cC---cceEEEEeeCCCEEEE
Confidence            457788999998 566554 22    345888888776521             1111 11   11468999999844 4


Q ss_pred             Eec-C-----CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---CceEEEE
Q 021484          105 SYN-D-----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIW  175 (312)
Q Consensus       105 s~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---dg~v~iw  175 (312)
                      +.. +     ..|+.+++.++..              +....+......  ..-..+.+.++++++..+.   ++.+.++
T Consensus       189 ~~~~~~~~~~~~v~~h~lgt~~~--------------~d~lv~~e~~~~--~~~~~~~s~d~~~l~i~~~~~~~~~~~l~  252 (686)
T PRK10115        189 VRKHPVTLLPYQVWRHTIGTPAS--------------QDELVYEEKDDT--FYVSLHKTTSKHYVVIHLASATTSEVLLL  252 (686)
T ss_pred             EEecCCCCCCCEEEEEECCCChh--------------HCeEEEeeCCCC--EEEEEEEcCCCCEEEEEEECCccccEEEE
Confidence            432 2     3577788876510              112234432222  2212222557777664433   4578888


Q ss_pred             ec
Q 021484          176 KK  177 (312)
Q Consensus       176 d~  177 (312)
                      +.
T Consensus       253 ~~  254 (686)
T PRK10115        253 DA  254 (686)
T ss_pred             EC
Confidence            84

>PRK10115 protease 2; Provisional

Probab=89.02  E-value=20  Score=33.68  Aligned_cols=109  Identities=6%  Similarity=-0.057  Sum_probs=63.4

Q ss_pred             ccEEEEEEccCCCeEEEec--CC----cEEEEEcCCCcCCCCCcCCcccccCCCCC-ceEecccCCceeeEEEEecCCCC
Q 021484           89 IHITGLAYSNTSELLISYN--DE----LVYLFEKNMGLGPSPLSLSPEDLQKREEP-QVYSGHRNSQTVKGVNFFGPNDE  161 (312)
Q Consensus        89 ~~i~~~~~~~~~~~l~s~~--d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~v~~~s~~~~  161 (312)
                      -.+..+.++|+|++|+.+.  +|    .|++.|+.++                ..+ ..+.+-     -..++| .++++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg----------------~~l~~~i~~~-----~~~~~w-~~D~~  184 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG----------------NWYPELLDNV-----EPSFVW-ANDSW  184 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC----------------CCCCccccCc-----ceEEEE-eeCCC
Confidence            4467789999999777652  33    3888888766                221 122111     135888 78887


Q ss_pred             EEEEeccC------ceEEEEeccCC--eeEEEeecCccceE-EEEEcCCCCeEEEEe---CCCcEEEccC
Q 021484          162 YVMSGSDC------GHLFIWKKKGG--KLVRLMVGDRHVVN-QLEPHPHIPMFATCG---IEKTVKLWAP  219 (312)
Q Consensus       162 ~l~~~~~d------g~v~iwd~~~~--~~~~~~~~~~~~v~-~~~~~p~~~~l~t~~---~d~~i~iwd~  219 (312)
                      .|+....+      ..|+.+++.++  +-...+........ .+..+.++++++..+   .++.+.+++.
T Consensus       185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            66554332      36778888877  33334443333333 333344777744433   3457888884

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.99  E-value=8.6  Score=36.40  Aligned_cols=63  Identities=11%  Similarity=0.073  Sum_probs=40.9

Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccce-------------EEEEEcC--CCCeEEEEeC----------CCcE
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV-------------NQLEPHP--HIPMFATCGI----------EKTV  214 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-------------~~~~~~p--~~~~l~t~~~----------d~~i  214 (312)
                      +..++.++.|+.|.-.|.++|+.+-.+.. .+.|             ..+.-.|  .+..++.++.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            45788899999999999999998876532 1111             0111122  1334555532          5889


Q ss_pred             EEccCCCCC
Q 021484          215 KLWAPMPTD  223 (312)
Q Consensus       215 ~iwd~~~~~  223 (312)
                      +-+|.++++
T Consensus       339 ~A~Da~TGk  347 (764)
T TIGR03074       339 RAFDVNTGA  347 (764)
T ss_pred             EEEECCCCc
Confidence            999998876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.65  E-value=1.9  Score=39.15  Aligned_cols=67  Identities=13%  Similarity=0.210  Sum_probs=41.3

Q ss_pred             CCCCEEEEeccCceEEEEeccC----CeeEEEe-ec---------------------CccceEEEEEcC----CCCeEEE
Q 021484          158 PNDEYVMSGSDCGHLFIWKKKG----GKLVRLM-VG---------------------DRHVVNQLEPHP----HIPMFAT  207 (312)
Q Consensus       158 ~~~~~l~~~~~dg~v~iwd~~~----~~~~~~~-~~---------------------~~~~v~~~~~~p----~~~~l~t  207 (312)
                      ++...++.+..||.+.......    +...... ..                     ....+..++.++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3677788888899888887653    2221111 10                     012455666666    6678999


Q ss_pred             EeCCCcEEEccCCCCCC
Q 021484          208 CGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       208 ~~~d~~i~iwd~~~~~~  224 (312)
                      .+.|+++|+||+.++..
T Consensus       236 l~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             EETTSEEEEEETTTTCE
T ss_pred             EeCCCeEEEEECCCCeE
Confidence            99999999999998875

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=88.65  E-value=6.7  Score=36.51  Aligned_cols=101  Identities=10%  Similarity=0.098  Sum_probs=52.5

Q ss_pred             eEEEEecCCCCEEEEeccCc-----eEEEEec---cCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          151 KGVNFFGPNDEYVMSGSDCG-----HLFIWKK---KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       151 ~~v~~~s~~~~~l~~~~~dg-----~v~iwd~---~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                      ..++| -|.|..+++-..||     .|.++..   +.|+.-... +....+..++|.-....++.+ ....|++|-....
T Consensus       250 ~~LSW-kpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNy  326 (1243)
T COG5290         250 HQLSW-KPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNY  326 (1243)
T ss_pred             hcccc-ccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHHh-hcceEEEEEccce
Confidence            45788 89999999877554     3555542   223321111 223455667776655544433 4578999987765


Q ss_pred             CCCCCCCChhhhhhhhccCCCCceeEEecCCc
Q 021484          223 DFPPLPDNAEKIMKANKQGREDHSRITLTPDV  254 (312)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  254 (312)
                      ...--....-+-+....|+++...-+-++..+
T Consensus       327 hWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~  358 (1243)
T COG5290         327 HWYLKVERQIPGISYVKWHPEEKNTLLFRDGE  358 (1243)
T ss_pred             EEEEEEeecCCCcceeeeccccCcEEEEecCC
Confidence            43110011111234455777543333333333

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.48  E-value=9.8  Score=29.38  Aligned_cols=129  Identities=12%  Similarity=0.123  Sum_probs=68.7

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP  122 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~  122 (312)
                      .+..-.-.+|.-..+|.++.++..              ..  .-.+.=+.+  ..+++-|..+ ....++.-|..+-   
T Consensus       102 ~~y~LTw~egvaf~~d~~t~~~lg--------------~~--~y~GeGWgL--t~d~~~LimsdGsatL~frdP~tf---  160 (262)
T COG3823         102 YFYQLTWKEGVAFKYDADTLEELG--------------RF--SYEGEGWGL--TSDDKNLIMSDGSATLQFRDPKTF---  160 (262)
T ss_pred             eEEEEEeccceeEEEChHHhhhhc--------------cc--ccCCcceee--ecCCcceEeeCCceEEEecCHHHh---
Confidence            344455678888888888776321              11  011222233  3455545554 3556666565543   


Q ss_pred             CCCcCCcccccCCCCCceEecccCC---ceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee------------
Q 021484          123 SPLSLSPEDLQKREEPQVYSGHRNS---QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV------------  187 (312)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~------------  187 (312)
                                   ....+.......   ..+..+.|  -+|...+-.-.+..|...+..+|+.+..+.            
T Consensus       161 -------------a~~~~v~VT~~g~pv~~LNELE~--VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~  225 (262)
T COG3823         161 -------------AELDTVQVTDDGVPVSKLNELEW--VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDK  225 (262)
T ss_pred             -------------hhcceEEEEECCeecccccceee--eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccc
Confidence                         222222211111   12445555  356666655566667777777777665443            


Q ss_pred             cCccceEEEEEcCCCCe-EEEE
Q 021484          188 GDRHVVNQLEPHPHIPM-FATC  208 (312)
Q Consensus       188 ~~~~~v~~~~~~p~~~~-l~t~  208 (312)
                      .|..-.+.+++.|++.. ++||
T Consensus       226 ~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         226 SNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cccccccceeecCcCCeEEEec
Confidence            23345678999998854 5555

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.22  E-value=5  Score=34.80  Aligned_cols=74  Identities=12%  Similarity=0.198  Sum_probs=50.8

Q ss_pred             eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccc-eEEEEE-cCCC----------------Ce-EEEEe
Q 021484          149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV-VNQLEP-HPHI----------------PM-FATCG  209 (312)
Q Consensus       149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~-~p~~----------------~~-l~t~~  209 (312)
                      .+.+++. +|.+++.++...-|+|.++|+.++..++.+++-.+. +.-+.. .+..                .+ ++-+-
T Consensus       309 ~~~~i~~-sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  309 EGESICL-SPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             eEEEEEE-CCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            3788887 999999999999999999999999888877765431 111111 1111                11 34445


Q ss_pred             CCCcEEEccCCCCC
Q 021484          210 IEKTVKLWAPMPTD  223 (312)
Q Consensus       210 ~d~~i~iwd~~~~~  223 (312)
                      .-|.|.||.++.+.
T Consensus       388 rRg~lEvW~~~~g~  401 (415)
T PF14655_consen  388 RRGILEVWSMRQGP  401 (415)
T ss_pred             cCCeEEEEecCCCC
Confidence            67889999987764

>PHA02790 Kelch-like protein; Provisional

Probab=88.13  E-value=19  Score=32.21  Aligned_cols=61  Identities=7%  Similarity=0.067  Sum_probs=33.0

Q ss_pred             CCCEEEEeccCceEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCC-----CcEEEccCCCCCC
Q 021484          159 NDEYVMSGSDCGHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDF  224 (312)
Q Consensus       159 ~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~  224 (312)
                      +++..+.|   |.+.+||..+.+...  .+.........+.  -++++.+.||.+     .++..||+.+.+.
T Consensus       407 ~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        407 GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             CCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence            45655666   356788887765432  2221111222222  266777777754     3566777776654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.66  E-value=14  Score=30.35  Aligned_cols=182  Identities=14%  Similarity=0.106  Sum_probs=92.2

Q ss_pred             cceEEEEEcCCC-----------CcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccE-EEEEEcc
Q 021484           31 IRLNAIVIDPRN-----------PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI-TGLAYSN   98 (312)
Q Consensus        31 ~~v~~~~~~p~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~   98 (312)
                      ...+.+.|+...           ...++.+++||+|.-|...-...       .++..+..  +-......| ..+++..
T Consensus        77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t-------~~~~~~~~--~d~s~~gavYkGLAi~~  147 (336)
T TIGR03118        77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTT-------RMTRAEIV--VDASQQGNVYKGLAVGP  147 (336)
T ss_pred             CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcc-------cccccEEE--EccCCCcceeeeeEEee
Confidence            456777777432           13467788999999999643320       00000000  001111222 3455544


Q ss_pred             C--CCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEE
Q 021484           99 T--SELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI  174 (312)
Q Consensus        99 ~--~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~i  174 (312)
                      .  +.+|..+  ..++|-+||-.=........+..-.+...-...-+..-...-+|+-..- .++.+.=+.|..-|.|-+
T Consensus       148 ~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~q-d~~~~d~v~G~G~G~Vdv  226 (336)
T TIGR03118       148 TGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQ-DADRNDEVAGAGLGYVNV  226 (336)
T ss_pred             cCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEec-CCcccccccCCCcceEEE
Confidence            3  4555555  4899999986432111111000000000000000000111112332222 444444455666789999


Q ss_pred             EeccCCeeEEEeec--CccceEEEEEcC------CCCeEEEEeCCCcEEEccCCCCC
Q 021484          175 WKKKGGKLVRLMVG--DRHVVNQLEPHP------HIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       175 wd~~~~~~~~~~~~--~~~~v~~~~~~p------~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      ||+. ++.++.+..  .-.....|+..|      .+.+|+---.||+|..||..++.
T Consensus       227 Fd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       227 FTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             EcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence            9986 888887742  223456677765      45566666689999999998765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=87.45  E-value=18  Score=31.32  Aligned_cols=110  Identities=9%  Similarity=-0.010  Sum_probs=60.8

Q ss_pred             EEEEEccCCCeEEEecCCcEEE-EEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc
Q 021484           92 TGLAYSNTSELLISYNDELVYL-FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG  170 (312)
Q Consensus        92 ~~~~~~~~~~~l~s~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg  170 (312)
                      ..+..++++.+++.+..|.+.. ||-..                 ..-+... ......+..+.| .+++..++++ ..|
T Consensus       242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~-----------------~~W~~~~-~~~~~~l~~v~~-~~dg~l~l~g-~~G  301 (398)
T PLN00033        242 STVNRSPDGDYVAVSSRGNFYLTWEPGQ-----------------PYWQPHN-RASARRIQNMGW-RADGGLWLLT-RGG  301 (398)
T ss_pred             eeEEEcCCCCEEEEECCccEEEecCCCC-----------------cceEEec-CCCccceeeeeE-cCCCCEEEEe-CCc
Confidence            3455667777777776665443 33211                 0001111 111233888988 7888887766 456


Q ss_pred             eEEEEeccCCe-----eEEEeec--CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          171 HLFIWKKKGGK-----LVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       171 ~v~iwd~~~~~-----~~~~~~~--~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      .+ ++....++     .......  ....++++.|.+++..+++| ..|.+....-....
T Consensus       302 ~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~G~t  359 (398)
T PLN00033        302 GL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDGGKS  359 (398)
T ss_pred             eE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCCCcc
Confidence            65 34444443     2222221  12358899999887766555 57877777644444

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=86.99  E-value=15  Score=29.79  Aligned_cols=197  Identities=8%  Similarity=-0.012  Sum_probs=111.0

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCc
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL  110 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~  110 (312)
                      ..-..++-.|+| ..-.++...+.|=-.|..+++..               .+..+.......|..-|+|..-++-...-
T Consensus        62 ~ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~---------------~ypLg~Ga~Phgiv~gpdg~~Witd~~~a  125 (353)
T COG4257          62 SAPFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVE---------------TYPLGSGASPHGIVVGPDGSAWITDTGLA  125 (353)
T ss_pred             CCccccccCCCC-ceEEecCccccceecCCCCCceE---------------EEecCCCCCCceEEECCCCCeeEecCcce
Confidence            345567777777 56677766666766777777521               11123344455677778876555532224


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEe--cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  188 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  188 (312)
                      |.-+|-++.                 ....|.  ............| ++.|++.+++.. |.---.|.. ...+..+..
T Consensus       126 I~R~dpkt~-----------------evt~f~lp~~~a~~nlet~vf-D~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpa  185 (353)
T COG4257         126 IGRLDPKTL-----------------EVTRFPLPLEHADANLETAVF-DPWGNLWFTGQI-GAYGRLDPA-RNVISVFPA  185 (353)
T ss_pred             eEEecCccc-----------------ceEEeecccccCCCcccceee-CCCccEEEeecc-ccceecCcc-cCceeeecc
Confidence            444554432                 122222  1112233777888 999999988863 111111221 122344433


Q ss_pred             C-ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCCh--hhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          189 D-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNA--EKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       189 ~-~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      . ....+.|+-.|+|..-++.-.+..|-.-|...+....+....  ..-....+..+-++..++....+.+..+|-..
T Consensus       186 PqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         186 PQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             CCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence            2 235578899999999777667788888888777544333211  22223444455566777766667777776443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=86.86  E-value=27  Score=32.65  Aligned_cols=133  Identities=14%  Similarity=0.085  Sum_probs=71.9

Q ss_pred             CccceEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCe-ecCCC--CCCC-C-cccccccccccCCCccEEEEEEc--cCC
Q 021484           29 NSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCH-WYSPI--SSDT-P-VDTFCPRHLIGKNNIHITGLAYS--NTS  100 (312)
Q Consensus        29 h~~~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~-~~~~~--~~~~-~-~~~~~~~~~~~~~~~~i~~~~~~--~~~  100 (312)
                      .+..|+-|....- +...|+.+..||.|.+|.+++-- .+...  ..+. . .....+... ..-...+++++++  ...
T Consensus        99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~  177 (717)
T PF08728_consen   99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKS  177 (717)
T ss_pred             CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcc
Confidence            3455666665542 22688899999999999874211 00000  0000 0 000011111 2234578999998  666


Q ss_pred             CeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC----CC-EEEEeccCceEEE
Q 021484          101 ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN----DE-YVMSGSDCGHLFI  174 (312)
Q Consensus       101 ~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~----~~-~l~~~~~dg~v~i  174 (312)
                      ++||.++ ...|.||-.......             .....-..+...  |.+|+|.+.+    |. ++++++-.|.+.+
T Consensus       178 rlIAVSsNs~~VTVFaf~l~~~r-------------~~~~~s~~~~hN--IP~VSFl~~~~d~~G~v~v~a~dI~G~v~~  242 (717)
T PF08728_consen  178 RLIAVSSNSQEVTVFAFALVDER-------------FYHVPSHQHSHN--IPNVSFLDDDLDPNGHVKVVATDISGEVWT  242 (717)
T ss_pred             eEEEEecCCceEEEEEEeccccc-------------cccccccccccC--CCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence            7888874 566666654321000             000000113322  8889884222    32 7888899999999


Q ss_pred             Eec
Q 021484          175 WKK  177 (312)
Q Consensus       175 wd~  177 (312)
                      |++
T Consensus       243 ~~I  245 (717)
T PF08728_consen  243 FKI  245 (717)
T ss_pred             EEE
Confidence            887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=86.56  E-value=17  Score=29.96  Aligned_cols=195  Identities=17%  Similarity=0.207  Sum_probs=92.2

Q ss_pred             eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCC-----cEEEEEeCCCeEEEEEccCCeecCCCCC---CC
Q 021484            2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP-----NYFAVGGSDEYARVYDIRKCHWYSPISS---DT   73 (312)
Q Consensus         2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~   73 (312)
                      -+||+++++..+.+.....-   .  .....+..+.+....+     ..+++=+..+-|.++|+.+++.......   ..
T Consensus        37 v~~Dl~t~~li~~~~~p~~~---~--~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~  111 (287)
T PF03022_consen   37 VAFDLKTNQLIRRYPFPPDI---A--PPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPD  111 (287)
T ss_dssp             EEEETTTTCEEEEEE--CCC---S---TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS
T ss_pred             EEEECCCCcEEEEEECChHH---c--ccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCccee
Confidence            47888888755555443221   0  0356788898887432     2344445557899999998874322211   00


Q ss_pred             C-cccccccccccCCCccEEEEEEcc---CCCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC
Q 021484           74 P-VDTFCPRHLIGKNNIHITGLAYSN---TSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS  147 (312)
Q Consensus        74 ~-~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (312)
                      | ...+............+..++.+|   +++.|.-.  +...++--...--..+   ...... .-....+.+ +.+. 
T Consensus       112 p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~---~~~~~~-~~~~~v~~l-G~k~-  185 (287)
T PF03022_consen  112 PDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDP---SLSDAQ-ALASQVQDL-GDKG-  185 (287)
T ss_dssp             -SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCST---T--HHH--HHHT-EEE-EE---
T ss_pred             ccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCc---cccccc-cccccceec-cccC-
Confidence            0 011110000011133477777766   55555543  2333333332110000   000000 000111122 2221 


Q ss_pred             ceeeEEEEecCCCCEEEEeccCceEEEEeccCC---eeEEEee-cC--ccceEEEEEcC--CCCeEEEE
Q 021484          148 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---KLVRLMV-GD--RHVVNQLEPHP--HIPMFATC  208 (312)
Q Consensus       148 ~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~-~~--~~~v~~~~~~p--~~~~l~t~  208 (312)
                      .....+++ +++|.++++--..+.|..|+..+.   +....+. ..  -..+.++++.+  +|.+.+.+
T Consensus       186 ~~s~g~~~-D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  186 SQSDGMAI-DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             -SECEEEE-ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCCceEEE-CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            12456777 789999999999999999998751   1122222 11  24678888888  66664444

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.38  E-value=28  Score=32.40  Aligned_cols=53  Identities=19%  Similarity=0.358  Sum_probs=37.9

Q ss_pred             CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021484           51 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG  119 (312)
Q Consensus        51 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~  119 (312)
                      .--.|+||+.. |+              ....+.-.|. .+..+.|+.+..+|+...+|++++|++...
T Consensus        62 a~~~I~If~~s-G~--------------lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge  114 (829)
T KOG2280|consen   62 ARPYIRIFNIS-GQ--------------LLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGE  114 (829)
T ss_pred             cceeEEEEecc-cc--------------chHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchh
Confidence            34568888875 43              1222223343 678999999988998899999999998754

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=86.32  E-value=25  Score=31.83  Aligned_cols=119  Identities=15%  Similarity=0.094  Sum_probs=60.9

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS  123 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~  123 (312)
                      ..++.++.++.|+-.|..+++.+.......+......    ......-..+++. ++++++...++.|.-+|..++    
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~----~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TG----  140 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPV----MCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTG----  140 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccc----cccccccccceEE-CCEEEEEcCCCEEEEEECCCC----
Confidence            4667777788999999999986544322111100000    0000000112222 345555557999999999888    


Q ss_pred             CCcCCcccccCCCCCceEecc--cCCceeeE-EEEecCCCCEEEEec------cCceEEEEeccCCeeEEEe
Q 021484          124 PLSLSPEDLQKREEPQVYSGH--RNSQTVKG-VNFFGPNDEYVMSGS------DCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~-v~~~s~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~  186 (312)
                                  +.+......  .....+.+ -..  .++ .++.+.      .+|.|..+|..+|+.+-.+
T Consensus       141 ------------k~~W~~~~~~~~~~~~~tssP~v--~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       141 ------------KVVWSKKNGDYKAGYTITAAPLV--VKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             ------------CEEeecccccccccccccCCcEE--ECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence                        444333211  10000111 111  023 344443      2689999999999876554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=85.40  E-value=35  Score=32.55  Aligned_cols=55  Identities=7%  Similarity=-0.009  Sum_probs=36.0

Q ss_pred             CceEEEEeccCCeeEEEeecCccc---------eEEEEEcC-CCC---eEEEEeCCCcEEEccCCCCC
Q 021484          169 CGHLFIWKKKGGKLVRLMVGDRHV---------VNQLEPHP-HIP---MFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       169 dg~v~iwd~~~~~~~~~~~~~~~~---------v~~~~~~p-~~~---~l~t~~~d~~i~iwd~~~~~  223 (312)
                      .+.|.-.|.++|+..-.++.....         ..-+.+.. +|+   .++.++.+|.+.+.|.++++
T Consensus       413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  480 (764)
T TIGR03074       413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE  480 (764)
T ss_pred             cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence            456777888899887666531111         11122222 553   68888999999999998876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.82  E-value=4.7  Score=21.27  Aligned_cols=28  Identities=7%  Similarity=0.063  Sum_probs=19.6

Q ss_pred             cceEEEEEcCCCCcEEEEEeCC--CeEEEE
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSD--EYARVY   58 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~d--g~i~iw   58 (312)
                      ..-...+|+|+|..++.++..+  |.-.||
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3567889999996666666666  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=83.81  E-value=28  Score=30.21  Aligned_cols=111  Identities=12%  Similarity=0.084  Sum_probs=64.6

Q ss_pred             CccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec---ccCCceeeEEEEecCCCCEEE
Q 021484           88 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG---HRNSQTVKGVNFFGPNDEYVM  164 (312)
Q Consensus        88 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~s~~~~~l~  164 (312)
                      ...++.+.+.+++.+++.+..|.+..=+-...              + .....+..   ......+..+.| .+++..++
T Consensus       280 ~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~--------------~-~~~~~f~~~~~~~~~~~l~~v~~-~~d~~~~a  343 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLTRGGGLYVSKGTGL--------------T-EEDFDFEEADIKSRGFGILDVGY-RSKKEAWA  343 (398)
T ss_pred             ccceeeeeEcCCCCEEEEeCCceEEEecCCCC--------------c-ccccceeecccCCCCcceEEEEE-cCCCcEEE
Confidence            45688999999999888888777655332211              0 00001111   111123888988 66666555


Q ss_pred             EeccCceEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEeCCCcEEEc
Q 021484          165 SGSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLW  217 (312)
Q Consensus       165 ~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~t~~~d~~i~iw  217 (312)
                      + +..|.+.... ..++.-...+   .-....+.+.|.++++.+++|. +|.|--|
T Consensus       344 ~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~il~~  396 (398)
T PLN00033        344 A-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVLLRY  396 (398)
T ss_pred             E-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEEEEe
Confidence            5 4567665543 4455433332   2235688999988877777764 6776544

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.59  E-value=38  Score=31.59  Aligned_cols=70  Identities=11%  Similarity=0.127  Sum_probs=45.6

Q ss_pred             eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee--cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      +..+.. ||+.++|+.=.+.|.|.+-+.+..+....+.  .| .+...++|.-+.  -++.+.+..+.+....+..
T Consensus       219 ~~ki~V-S~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcgnd--aVvl~~e~~l~lvgp~gd~  290 (829)
T KOG2280|consen  219 VVKISV-SPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDH-DPPKQMAWCGND--AVVLSWEVNLMLVGPPGDS  290 (829)
T ss_pred             EEEEEE-cCCcceEEEEecCCcEEEEecchhhhhhccCCCCC-CchHhceeecCC--ceEEEEeeeEEEEcCCCCc
Confidence            566666 8899999999999999999888777766665  23 233467775544  2233334455555544443

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=83.22  E-value=28  Score=29.65  Aligned_cols=53  Identities=15%  Similarity=0.305  Sum_probs=33.7

Q ss_pred             EeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEcc
Q 021484          165 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWA  218 (312)
Q Consensus       165 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~--~d~~i~iwd  218 (312)
                      .+..+|++.-||..+... +.+...-.-.+.++.||++.+++.+-  .-..-|.|=
T Consensus       194 ~g~~~GRl~~YD~~tK~~-~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi  248 (376)
T KOG1520|consen  194 EGDPTGRLFRYDPSTKVT-KVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWI  248 (376)
T ss_pred             cCCCccceEEecCcccch-hhhhhcccccccccCCCCCCEEEEEeeccceeeeeEe
Confidence            444678888888776543 33332334457899999999977764  223445663

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.19  E-value=21  Score=31.73  Aligned_cols=89  Identities=10%  Similarity=0.135  Sum_probs=51.9

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcc---ccccc--ccccCCCccEEEEEEccCC----
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD---TFCPR--HLIGKNNIHITGLAYSNTS----  100 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~i~~~~~~~~~----  100 (312)
                      .-.|..+..++.| ..++-.+.+|.+.++=.+.......++.+.++-   ++...  .+.....-.+...+|+|+.    
T Consensus       103 ~feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~  181 (741)
T KOG4460|consen  103 LFEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP  181 (741)
T ss_pred             eEEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence            3467888899999 678888888877665533222112222222221   11111  1111222345678899976    


Q ss_pred             CeEEEecCCcEEEEEcCCC
Q 021484          101 ELLISYNDELVYLFEKNMG  119 (312)
Q Consensus       101 ~~l~s~~d~~i~iwd~~~~  119 (312)
                      .+++-.+|..+++||+...
T Consensus       182 hL~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  182 HLVLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             eEEEEecCcEEEEEecCCc
Confidence            3555578999999999764

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=82.93  E-value=13  Score=32.33  Aligned_cols=163  Identities=13%  Similarity=0.074  Sum_probs=88.4

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCC----ccEE-EEEEccCCC-eE
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN----IHIT-GLAYSNTSE-LL  103 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~-~~~~~~~~~-~l  103 (312)
                      ...|..+-..|++ +.++.-+. ..+.++++.+..+...             .+.....    ..|+ .+..-..|. ++
T Consensus       220 ~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~r-------------kl~~dspg~~~~~Vte~l~lL~Gg~SLL  284 (733)
T COG4590         220 FSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIR-------------KLVDDSPGDSRHQVTEQLYLLSGGFSLL  284 (733)
T ss_pred             ccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchh-------------hhhhcCCCchHHHHHHHHHHHhCceeEE
Confidence            4567788899999 56655444 6788888876543211             0001000    0111 111122333 55


Q ss_pred             EEecCCcEEEE-EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021484          104 ISYNDELVYLF-EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  182 (312)
Q Consensus       104 ~s~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~  182 (312)
                      +...||.|.-| |.+....+           ....++.++-....  +..+.- ..+.+-+++-...|++..+..-..+.
T Consensus       285 v~~~dG~vsQWFdvr~~~~p-----------~l~h~R~f~l~pa~--~~~l~p-e~~rkgF~~l~~~G~L~~f~st~~~~  350 (733)
T COG4590         285 VVHEDGLVSQWFDVRRDGQP-----------HLNHIRNFKLAPAE--VQFLLP-ETNRKGFYSLYRNGTLQSFYSTSEKL  350 (733)
T ss_pred             EEcCCCceeeeeeeecCCCC-----------cceeeeccccCccc--ceeecc-ccccceEEEEcCCCceeeeecccCcc
Confidence            55678888766 66554211           11122222222222  333322 23344567777888888876543333


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      +. +..--..+.-+++||.+.++++-. .|.|+++.+++..
T Consensus       351 lL-~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~  389 (733)
T COG4590         351 LL-FERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRN  389 (733)
T ss_pred             ee-hhhhhcCcceeeeCcccchheeec-CCceEEEEecCCC
Confidence            32 222223566789999999987754 6889999887754

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=82.88  E-value=5.2  Score=21.09  Aligned_cols=29  Identities=3%  Similarity=-0.099  Sum_probs=19.0

Q ss_pred             CccceEEEEEcCCCCeEEEEe-CC--CcEEEc
Q 021484          189 DRHVVNQLEPHPHIPMFATCG-IE--KTVKLW  217 (312)
Q Consensus       189 ~~~~v~~~~~~p~~~~l~t~~-~d--~~i~iw  217 (312)
                      ....-....|+|+|+.|+-++ .+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344567889999999866555 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=82.73  E-value=12  Score=28.00  Aligned_cols=30  Identities=17%  Similarity=0.203  Sum_probs=23.5

Q ss_pred             ccEEEEEEccCCC------eEEEe-cCCcEEEEEcCC
Q 021484           89 IHITGLAYSNTSE------LLISY-NDELVYLFEKNM  118 (312)
Q Consensus        89 ~~i~~~~~~~~~~------~l~s~-~d~~i~iwd~~~  118 (312)
                      ..+..++|||.|-      +|+.. .++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            3789999999662      66664 699999998654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=81.99  E-value=4.5  Score=19.70  Aligned_cols=25  Identities=28%  Similarity=0.542  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYD   59 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd   59 (312)
                      .|.+++..+   .+++.+.+-+.+|+|.
T Consensus         3 ~i~aia~g~---~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    3 EIEAIAAGD---SWVAVATSAGYLRIFS   27 (27)
T ss_pred             eEEEEEccC---CEEEEEeCCCeEEecC
Confidence            477888766   5888888889999974

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=81.67  E-value=0.41  Score=41.33  Aligned_cols=101  Identities=11%  Similarity=0.088  Sum_probs=65.5

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      ++....++|..+++..++.+-..+.+.+||+.+..-               ..+-.+-...-.-+.|++.+..++.+ ..
T Consensus        74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt---------------qqLE~gg~~s~sll~wsKg~~el~ig~~~  138 (615)
T KOG2247|consen   74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT---------------QQLESGGTSSKSLLAWSKGTPELVIGNNA  138 (615)
T ss_pred             chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH---------------HHHhccCcchHHHHhhccCCccccccccc
Confidence            445668899998877777888899999999985431               11111111222237888888877776 48


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM  164 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~  164 (312)
                      +.+.+++..+.                +.....-.|...  ++++++ .+.+..+.
T Consensus       139 gn~viynhgts----------------R~iiv~Gkh~RR--gtq~av-~lEd~vil  175 (615)
T KOG2247|consen  139 GNIVIYNHGTS----------------RRIIVMGKHQRR--GTQIAV-TLEDYVIL  175 (615)
T ss_pred             cceEEEeccch----------------hhhhhhcccccc--eeEEEe-cccceeee
Confidence            99999998765                232222225544  888888 66655443

>smart00564 PQQ beta-propeller repeat

Probab=81.37  E-value=4.9  Score=20.13  Aligned_cols=25  Identities=28%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             CEEEEeccCceEEEEeccCCeeEEE
Q 021484          161 EYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       161 ~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                      ..++.++.+|.+..+|..+|+.+-.
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEE
Confidence            3577888899999999998887643

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	312
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-06
2h9l_A	329	Wdr5delta23 Length = 329		4e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		7e-05

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 126 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 186 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 217
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 131 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 190
           D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ + G  
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 191 HVVNQLEPHPHIPMFATCGIE--KTVKLW 217
            VV     HP   + A+  +E  KT+KLW
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 49/206 (23%)
Query: 44  NYFAVGGSDEYARVYDIR--KCHWYSPISSDTPVDTF----------------------- 78
           N    G  DE  R++D++  KC    P  SD PV                          
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Query: 79  ----CPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQ 133
               C + LI  +N  ++ + +S N   +L +  D  + L+                D  
Sbjct: 203 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYS 246
Query: 134 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 193
           K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ + G   VV
Sbjct: 247 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 306
Query: 194 NQLEPHPHIPMFATCGIE--KTVKLW 217
                HP   + A+  +E  KT+KLW
Sbjct: 307 ISTACHPTENIIASAALENDKTIKLW 332

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 49/206 (23%)
Query: 44  NYFAVGGSDEYARVYDIR--KCHWYSPISSDTPVDTF----------------------- 78
           N    G  DE  R++D++  KC    P  SD PV                          
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 79  ----CPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQ 133
               C + LI  +N  ++ + +S N   +L +  D  + L+                D  
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYS 244
Query: 134 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 193
           K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ + G   VV
Sbjct: 245 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 304
Query: 194 NQLEPHPHIPMFATCGIE--KTVKLW 217
                HP   + A+  +E  KT+KLW
Sbjct: 305 ISTACHPTENIIASAALENDKTIKLW 330

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 126 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 291
Query: 186 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 217
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 292 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 325

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 126 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 186 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 217
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 126 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Query: 186 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 217
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 280 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 313

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 126 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Query: 186 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 217
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 276 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 309

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 126 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Query: 186 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 217
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 271 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 304

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 126 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 186 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 217
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 126 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 186 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 217
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 126 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Query: 186 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 217
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 274 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 307

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 126 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 186 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 217
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 126 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 186 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 217
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 126 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 186 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 217
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 126 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 186 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 217
           + G   VV     HP   + A+  +E  KT+KL+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLY 311

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 126 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 186 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKL 216
           + G   VV     HP   + A+  +E  KT+KL
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKL 310

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 22/128 (17%)
Query: 91  ITGLAYSNTSELLISYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 149
           + G+A+S   + + S +D+  V L+ +N  L                  Q  +GH  S +
Sbjct: 183 VWGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGH--SSS 223
Query: 150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 209
           V+GV  F P+ + + S SD   + +W + G +L++ + G    VN +   P     A+  
Sbjct: 224 VRGV-AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Query: 210 IEKTVKLW 217
            +KTVKLW
Sbjct: 282 DDKTVKLW 289

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.98
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.98
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.98
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.98
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.98
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.85
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.83
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.83
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.81
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.81
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.8
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.79
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.79
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.78
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.77
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.77
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.77
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.76
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.76
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.74
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.74
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.74
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.73
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.71
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.69
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.69
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.69
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.68
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.67
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.67
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.66
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.65
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.64
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.64
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.63
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.62
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.6
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.59
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.54
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.54
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.53
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.53
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.53
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.53
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.52
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.52
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.51
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.5
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.49
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.48
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.45
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.45
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.43
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.4
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.39
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.38
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.37
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.37
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.37
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.35
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.33
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.33
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.31
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.3
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.27
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.25
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.23
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.22
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.19
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.18
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.17
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.17
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.17
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.14
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.13
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.13
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.07
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.07
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.05
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.05
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.04
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.97
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.97
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.93
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.93
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.89
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.87
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.87
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.86
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.86
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.8
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.79
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.78
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.66
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.66
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.63
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.61
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.6
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.57
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.56
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.54
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.46
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.46
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.46
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.42
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.41
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.4
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.4
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.39
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.39
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.38
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.36
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.35
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.35
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.34
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.34
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.33
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.33
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.32
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.31
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.24
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.22
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.19
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.18
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.12
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.0
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.0
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.98
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.97
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.97
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.92
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.91
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.89
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.85
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.83
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.77
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.75
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.71
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.71
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.7
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.69
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.67
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.66
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.61
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.6
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.59
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.59
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.47
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.46
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.39
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.38
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.32
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.31
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.27
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.23
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.15
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.13
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.13
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.1
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.08
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.04
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.0
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.95
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.93
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.77
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.63
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.6
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.57
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.56
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.53
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.5
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.49
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.42
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.34
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.21
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.14
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.07
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.98
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.88
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.77
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.72
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.68
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.67
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.64
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.63
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.49
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.99
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.99
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.96
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.93
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.53
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.33
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.11
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	93.97
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.91
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.68
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.56
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.37
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	91.88
3ott_A	758	Two-component system sensor histidine kinase; beta	91.85
3ott_A	758	Two-component system sensor histidine kinase; beta	91.76
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.1
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	90.97
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	90.85
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	87.95
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.57
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.35
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	86.2
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	85.19
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	84.4
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	83.29
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	82.12
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	80.11

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7e-38  Score=262.10  Aligned_cols=223  Identities=12%  Similarity=0.120  Sum_probs=180.6

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+|||+++++....+....       .+|...|++++|+|++ ++|++|+.|++|++||+.++++              .
T Consensus       105 v~lWd~~~~~~~~~~~~~~-------~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~--------------~  162 (344)
T 4gqb_B          105 VELWELDENETLIVSKFCK-------YEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVV--------------L  162 (344)
T ss_dssp             EEEEEECTTSSCEEEEEEE-------ECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE--------------E
T ss_pred             EEEEeccCCCceeEeeccc-------cCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE--------------E
Confidence            6899999877554443321       2489999999999999 8999999999999999998872              2


Q ss_pred             cccccCCCccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           81 RHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                      ..+ .+|...|.+++|+|++. +|+++ .|+.|++||++++                +....+..+.....+.+++| +|
T Consensus       163 ~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~----------------~~~~~~~~~~~~~~~~~~~~-~p  224 (344)
T 4gqb_B          163 SSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP----------------KPASQIGCSAPGYLPTSLAW-HP  224 (344)
T ss_dssp             EEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS----------------SCEEECC----CCCEEEEEE-CS
T ss_pred             EEE-cCcCCceEEEEecCCCCCceeeecccccccccccccc----------------ceeeeeecceeeccceeeee-cC
Confidence            222 78999999999999985 77776 5999999999887                55555543332234899999 66


Q ss_pred             -CCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhh
Q 021484          159 -NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMK  236 (312)
Q Consensus       159 -~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  236 (312)
                       ++++|++|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++++.|++|+|||++++++..+.+|...+..
T Consensus       225 ~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~  304 (344)
T 4gqb_B          225 QQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRD  304 (344)
T ss_dssp             SCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEE
T ss_pred             CCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEE
Confidence             56788999999999999999999999999999999999999998 5799999999999999999887777788887755


Q ss_pred             hhccCCCCc-eeEEecCCceEEEEEeccc
Q 021484          237 ANKQGREDH-SRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       237 ~~~~~~~~~-~l~s~~~d~~i~i~~~~~~  264 (312)
                      . .+++++. ++++++.|+.|++|++...
T Consensus       305 v-~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          305 A-TWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             E-EECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             E-EEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            4 4677654 5678999999999998765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.9e-37  Score=256.26  Aligned_cols=248  Identities=15%  Similarity=0.216  Sum_probs=202.6

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||++..+.......         .||...|.+++|+|++ .++++++.|++|++||+.+++.              .
T Consensus        60 v~vW~~~~~~~~~~~~l---------~gh~~~v~~~~~~~~~-~~l~s~s~D~~i~lWd~~~~~~--------------~  115 (321)
T 3ow8_A           60 VKVWKWRDERLDLQWSL---------EGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGKQ--------------I  115 (321)
T ss_dssp             EEEEEEETTEEEEEEEE---------CCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE--------------E
T ss_pred             EEEEECCCCCeeeeeee---------ccCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCE--------------E
Confidence            57888876543222222         3589999999999998 7999999999999999998873              2


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+ ..|...+.+++|+|++++|+++ .++.|++|++.++                +....+..+...  +.+++| +|+
T Consensus       116 ~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~----------------~~~~~~~~~~~~--v~~~~~-spd  175 (321)
T 3ow8_A          116 KSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG----------------KKEYSLDTRGKF--ILSIAY-SPD  175 (321)
T ss_dssp             EEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC----------------SEEEEEECSSSC--EEEEEE-CTT
T ss_pred             EEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC----------------ceeEEecCCCce--EEEEEE-CCC
Confidence            222 5667788899999999999997 5999999999887                566677777755  999999 999


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN  238 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~  238 (312)
                      +++|++|+.||.|++||+++++++..+.+|..+|.+++|+|++++|++++.|++|++||++.... ..+.+|...+.. .
T Consensus       176 g~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~-~  254 (321)
T 3ow8_A          176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN-V  254 (321)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEE-E
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEE-E
Confidence            99999999999999999999999999999999999999999999999999999999999988764 556667766644 4


Q ss_pred             ccCCCCceeEEecCCceEEEEEecccCcc---------ce-eEeecCCCccCCCCCCCeEEEeec
Q 021484          239 KQGREDHSRITLTPDVIMHVLRLQRRQTL---------AY-RERRYNAADFESDEEEGETYLLGF  293 (312)
Q Consensus       239 ~~~~~~~~l~s~~~d~~i~i~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~v~~~~~  293 (312)
                      .+++++.++++++.|+.+++||+.+....         ++ ..+.+++..+.+...++.|.+||.
T Consensus       255 ~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          255 AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            47888999999999999999998754321         11 255666666777667777777764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-36  Score=260.80  Aligned_cols=246  Identities=14%  Similarity=0.195  Sum_probs=202.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+.           +|...|++++|+|++ .+|++|+.|++|++||+.++++              .
T Consensus       132 i~vwd~~~~~~~~~l~-----------~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~~~~~~--------------~  185 (410)
T 1vyh_C          132 IKVWDYETGDFERTLK-----------GHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQGFEC--------------I  185 (410)
T ss_dssp             EEEEETTTCCCCEEEC-----------CCSSCEEEEEECTTS-SEEEEEETTSCCCEEETTSSCE--------------E
T ss_pred             EEEEECCCCcEEEEEe-----------ccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce--------------e
Confidence            5789988766444332           488899999999998 7999999999999999988762              2


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+ .+|...|.+++|+|++.+|+++ .|+.|++||+.++                ..+..+.+|...  |.++.| +++
T Consensus       186 ~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~  245 (410)
T 1vyh_C          186 RTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----------------YCVKTFTGHREW--VRMVRP-NQD  245 (410)
T ss_dssp             ECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-CTT
T ss_pred             EEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----------------cEEEEEeCCCcc--EEEEEE-CCC
Confidence            222 7899999999999999988886 5999999999987                778889999866  999999 999


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCC--------------------CCeEEEEeCCCcEEEccC
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH--------------------IPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~--------------------~~~l~t~~~d~~i~iwd~  219 (312)
                      +.+|++|+.|+.|++||+.++++...+.+|...|.+++|+|+                    +.+|++++.|++|++||+
T Consensus       246 g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~  325 (410)
T 1vyh_C          246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV  325 (410)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence            999999999999999999999999999999999999999996                    668999999999999999


Q ss_pred             CCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCccce----------eEeecCCCccCCCCCCCeE
Q 021484          220 MPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY----------RERRYNAADFESDEEEGET  288 (312)
Q Consensus       220 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v  288 (312)
                      +++. +..+.+|...+.. ..+++++.++++++.|+.|++||+........          ..+.++...+.++..++.|
T Consensus       326 ~~~~~~~~~~~h~~~v~~-v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i  404 (410)
T 1vyh_C          326 STGMCLMTLVGHDNWVRG-VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV  404 (410)
T ss_dssp             TTTEEEEEEECCSSCEEE-EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred             CCCceEEEEECCCCcEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence            8876 3556667666643 45788899999999999999999865432211          1445556666666666666


Q ss_pred             EEeec
Q 021484          289 YLLGF  293 (312)
Q Consensus       289 ~~~~~  293 (312)
                      .+|+.
T Consensus       405 ~vW~~  409 (410)
T 1vyh_C          405 KVWEC  409 (410)
T ss_dssp             EEEC-
T ss_pred             EEEeC
Confidence            66653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.9e-36  Score=248.46  Aligned_cols=234  Identities=17%  Similarity=0.239  Sum_probs=192.4

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      +|..+|++++|+|++ .+|++|+.||+|++||+.+++.              ...+ ..|..+|.+++|+|++++|+++ 
T Consensus        11 ~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~~--------------~~~~-~~~~~~v~~~~~~~~~~~l~s~s   74 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVE--------------VRSI-QVTETPVRAGKFIARKNWIIVGS   74 (304)
T ss_dssp             EECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE--------------EEEE-ECCSSCEEEEEEEGGGTEEEEEE
T ss_pred             CCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCce--------------eEEe-eccCCcEEEEEEeCCCCEEEEEC
Confidence            488899999999999 8999999999999999998862              2222 6788999999999999999987 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEEE
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRL  185 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~  185 (312)
                      .|+.|++||+.++                +.+..+.+|...  |.+++| +|++++|++|+.|++|++||++++ .....
T Consensus        75 ~d~~i~vwd~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~  135 (304)
T 2ynn_A           75 DDFRIRVFNYNTG----------------EKVVDFEAHPDY--IRSIAV-HPTKPYVLSGSDDLTVKLWNWENNWALEQT  135 (304)
T ss_dssp             TTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTSCEEEEEGGGTTEEEEE
T ss_pred             CCCEEEEEECCCC----------------cEEEEEeCCCCc--EEEEEE-cCCCCEEEEECCCCeEEEEECCCCcchhhh
Confidence            5999999999987                788889999876  999999 999999999999999999999877 55677


Q ss_pred             eecCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCCC-CCCC-CChhhhhhhhccC--CCCceeEEecCCceEEEEE
Q 021484          186 MVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDF-PPLP-DNAEKIMKANKQG--REDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~--~~~~~l~s~~~d~~i~i~~  260 (312)
                      +.+|...|.+++|+| ++..|++++.|++|++||++.... ..+. .+...+ ....+.  +++.++++++.|+.+++||
T Consensus       136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~s~D~~i~iWd  214 (304)
T 2ynn_A          136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV-NYVDYYPLPDKPYMITASDDLTIKIWD  214 (304)
T ss_dssp             ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCE-EEEEECCSTTCCEEEEEETTSEEEEEE
T ss_pred             hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcE-EEEEEEEcCCCCEEEEEcCCCeEEEEe
Confidence            889999999999999 578899999999999999976653 2222 232333 222233  3677999999999999999


Q ss_pred             ecccCcc---------c-eeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          261 LQRRQTL---------A-YRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       261 ~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      ++.....         + ...+.|+...+.+...++.|.+||...+.
T Consensus       215 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          215 YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             CCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            8754211         1 22667788888888889999999987654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.4e-36  Score=249.18  Aligned_cols=214  Identities=17%  Similarity=0.315  Sum_probs=185.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+++.+....+..           |...+.+++|+|++ ++|++|+.|+.|++|++.+++.              .
T Consensus       104 i~lWd~~~~~~~~~~~~-----------~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~--------------~  157 (321)
T 3ow8_A          104 IRLWDLENGKQIKSIDA-----------GPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKK--------------E  157 (321)
T ss_dssp             EEEEETTTTEEEEEEEC-----------CTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSE--------------E
T ss_pred             EEEEECCCCCEEEEEeC-----------CCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCce--------------e
Confidence            57999988765444432           56678999999999 8999999999999999998762              2


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      .. +..|...|.+++|+|++++|+++ .|+.|++||+.++                +.+..+.+|...  |.+++| +|+
T Consensus       158 ~~-~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~----------------~~~~~~~~h~~~--v~~l~~-spd  217 (321)
T 3ow8_A          158 YS-LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG----------------KLLHTLEGHAMP--IRSLTF-SPD  217 (321)
T ss_dssp             EE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----------------EEEEEECCCSSC--CCEEEE-CTT
T ss_pred             EE-ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC----------------cEEEEEcccCCc--eeEEEE-cCC
Confidence            22 25677889999999999999997 5999999999887                677888888866  999999 999


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKAN  238 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~  238 (312)
                      +++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++ +..+.+|...+.. .
T Consensus       218 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~-v  296 (321)
T 3ow8_A          218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWG-V  296 (321)
T ss_dssp             SCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE-E
T ss_pred             CCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEE-E
Confidence            9999999999999999999999999999999999999999999999999999999999998876 3556667776644 4


Q ss_pred             ccCCCCceeEEecCCceEEEEEe
Q 021484          239 KQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       239 ~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .+++++..+++++.|+.+++||+
T Consensus       297 ~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          297 KYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EECTTSSEEEEEETTCCEEEEEC
T ss_pred             EECCCCCEEEEEeCCCeEEEEeC
Confidence            47888999999999999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=9.2e-36  Score=255.50  Aligned_cols=235  Identities=15%  Similarity=0.246  Sum_probs=198.3

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .+|..+|++++|+|++ .+|++|+.||+|++||+.+++              .... +.+|...|.+++|+|++++|+++
T Consensus       105 ~gh~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~~~--------------~~~~-l~~h~~~V~~v~~~~~~~~l~sg  168 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGD--------------FERT-LKGHTDSVQDISFDHSGKLLASC  168 (410)
T ss_dssp             ECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCC--------------CCEE-ECCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc--------------EEEE-EeccCCcEEEEEEcCCCCEEEEE
Confidence            4799999999999998 799999999999999999886              2222 27899999999999999999987


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                       .|+.|++||+.+.                +.+..+.+|...  |.+++| +|++++|++|+.|+.|++||+++++++..
T Consensus       169 s~D~~i~iwd~~~~----------------~~~~~~~~h~~~--V~~v~~-~p~~~~l~s~s~D~~i~~wd~~~~~~~~~  229 (410)
T 1vyh_C          169 SADMTIKLWDFQGF----------------ECIRTMHGHDHN--VSSVSI-MPNGDHIVSASRDKTIKMWEVQTGYCVKT  229 (410)
T ss_dssp             ETTSCCCEEETTSS----------------CEEECCCCCSSC--EEEEEE-CSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             eCCCeEEEEeCCCC----------------ceeEEEcCCCCC--EEEEEE-eCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence             5999999999887                677888888866  999999 99999999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCC--------------------C
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGRE--------------------D  244 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~--------------------~  244 (312)
                      +.+|...|.++.|+|++.++++++.|++|++||+.++.. ..+.+|...+.. ..+.++                    +
T Consensus       230 ~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g  308 (410)
T 1vyh_C          230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC-ISWAPESSYSSISEATGSETKKSGKPG  308 (410)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE-EEECCSCGGGGGGGCCSCC-------C
T ss_pred             EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEE-EEEcCcccccchhhhccccccccCCCC
Confidence            999999999999999999999999999999999988763 344445544432 223332                    5


Q ss_pred             ceeEEecCCceEEEEEecccCcc---------c-eeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          245 HSRITLTPDVIMHVLRLQRRQTL---------A-YRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       245 ~~l~s~~~d~~i~i~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      .++++++.|+.+++||++.....         + -..+.+++..+.+...++.|.+||...+.
T Consensus       309 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~  371 (410)
T 1vyh_C          309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR  371 (410)
T ss_dssp             CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            68999999999999998754221         1 12667788888888899999999986653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.9e-36  Score=253.93  Aligned_cols=223  Identities=11%  Similarity=0.104  Sum_probs=175.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+|||+.+.+.........       .+|...|++++|+|++ ++|++|+.|+.|++||+.++++              .
T Consensus       117 v~lWd~~~~~~~~~~~~~~-------~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~--------------~  174 (357)
T 4g56_B          117 VELWEILEKESLLVNKFAK-------YEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAV--------------L  174 (357)
T ss_dssp             EEEC--------CCCCEEE-------CCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEE--------------E
T ss_pred             EEEeeccccceeEEEeecc-------CCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE--------------E
Confidence            5899998776443332221       2489999999999998 8999999999999999998872              2


Q ss_pred             cccccCCCccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           81 RHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                      ..+ .+|...|.+++|+|++. +++++ .|+.|++||++++                +....+..+.....+.+++| +|
T Consensus       175 ~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~----------------~~~~~~~~~~~~~~v~~v~~-sp  236 (357)
T 4g56_B          175 KSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP----------------KPATRIDFCASDTIPTSVTW-HP  236 (357)
T ss_dssp             EEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS----------------SCBCBCCCTTCCSCEEEEEE-CT
T ss_pred             EEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC----------------ceeeeeeeccccccccchhh-hh
Confidence            222 78999999999999985 66665 6999999999887                44444443333344999999 77


Q ss_pred             C-CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhh
Q 021484          159 N-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMK  236 (312)
Q Consensus       159 ~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  236 (312)
                      + +.+|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++++.|++|+|||++++++....+|...+..
T Consensus       237 ~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~  316 (357)
T 4g56_B          237 EKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTG  316 (357)
T ss_dssp             TSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEE
T ss_pred             cccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEE
Confidence            6 5788999999999999999999999999999999999999987 5799999999999999999886555578777755


Q ss_pred             hhccCC-CCceeEEecCCceEEEEEeccc
Q 021484          237 ANKQGR-EDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       237 ~~~~~~-~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      . .++| ++.++++++.|+.|++|++...
T Consensus       317 v-afsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          317 V-AWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             E-EECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             E-EEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            4 4665 7889999999999999998765

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2e-35  Score=247.22  Aligned_cols=221  Identities=14%  Similarity=0.231  Sum_probs=181.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+.           +|...|.+++|+|++ ++|++|+.|+.|++|++.+.+..           ...
T Consensus        79 v~iWd~~~~~~~~~~~-----------~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~-----------~~~  135 (340)
T 1got_B           79 LIIWDSYTTNKVHAIP-----------LRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGN-----------VRV  135 (340)
T ss_dssp             EEEEETTTCCEEEEEE-----------CSSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTCSBS-----------CEE
T ss_pred             EEEEECCCCCcceEee-----------cCCccEEEEEECCCC-CEEEEEeCCCeEEEEECccCCCc-----------cee
Confidence            5789887765433333           267889999999998 89999999999999999865310           011


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND  160 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~  160 (312)
                      ...+.+|...|.++.|++++.+++++.|+.|++||+.++                +....+.+|...  |.+++| +|++
T Consensus       136 ~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~  196 (340)
T 1got_B          136 SRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG----------------QQTTTFTGHTGD--VMSLSL-APDT  196 (340)
T ss_dssp             EEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-CTTS
T ss_pred             EEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC----------------cEEEEEcCCCCc--eEEEEE-CCCC
Confidence            222368999999999999887555567999999999887                677888889866  999999 9999


Q ss_pred             CEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCC--CChhhhhhh
Q 021484          161 EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP--DNAEKIMKA  237 (312)
Q Consensus       161 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~--~~~~~~~~~  237 (312)
                      ++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++||++.... ..+.  .+... +..
T Consensus       197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~-v~~  275 (340)
T 1got_B          197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG-ITS  275 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC-EEE
T ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccc-eEE
Confidence            9999999999999999999999999999999999999999999999999999999999987653 2221  11122 344


Q ss_pred             hccCCCCceeEEecCCceEEEEEeccc
Q 021484          238 NKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       238 ~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ..+++++.++++++.|+.+++||+...
T Consensus       276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~  302 (340)
T 1got_B          276 VSFSKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEECCCCCEEEEECCCCeEEEEEcccC
Confidence            567889999999999999999997654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.1e-35  Score=241.78  Aligned_cols=250  Identities=13%  Similarity=0.151  Sum_probs=197.2

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.......-.....+      .+|...|.+++|+|++ .+|++|+.|++|++||+.+++.              .
T Consensus        42 v~~W~~~~~~~~~~~~~~~~------~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~~~~--------------~  100 (319)
T 3frx_A           42 LISWKLTGDDQKFGVPVRSF------KGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVATGET--------------Y  100 (319)
T ss_dssp             EEEEEEEEETTEEEEEEEEE------ECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE--------------E
T ss_pred             EEEecCCCCCccccccceEE------eCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCe--------------e
Confidence            57888865432211111111      3589999999999998 8999999999999999998872              2


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+ .+|...|.+++|+|++.+|+++ .|+.|++||++.                 ..+..+.+|...  |.+++| .|.
T Consensus       101 ~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-----------------~~~~~~~~h~~~--v~~~~~-~~~  159 (319)
T 3frx_A          101 QRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-----------------QCLATLLGHNDW--VSQVRV-VPN  159 (319)
T ss_dssp             EEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-----------------CEEEEECCCSSC--EEEEEE-CCC
T ss_pred             EEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------------CeEEEEeccCCc--EEEEEE-ccC
Confidence            222 7899999999999999999987 599999999975                 466778888866  999999 774


Q ss_pred             ------CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChh
Q 021484          160 ------DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAE  232 (312)
Q Consensus       160 ------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~  232 (312)
                            +.+|++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.|++|++||+.+.+. ..+. ...
T Consensus       160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~  238 (319)
T 3frx_A          160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS-AQD  238 (319)
T ss_dssp             ------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-CCS
T ss_pred             CCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCC
Confidence                  45899999999999999999999999999999999999999999999999999999999988763 3332 223


Q ss_pred             hhhhhhccCCCCceeEEecCCceEEEEEecccCc------------------cceeEeecCCCccCCCCCCCeEEEeecC
Q 021484          233 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT------------------LAYRERRYNAADFESDEEEGETYLLGFS  294 (312)
Q Consensus       233 ~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~  294 (312)
                      .+ ....+++++.++++++.+ .+++|++.....                  ..-..++|++..+.++..++.|.+|++.
T Consensus       239 ~v-~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          239 EV-FSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             CE-EEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             cE-EEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence            33 445578888888777655 589998754211                  1123678888888888888889888875


Q ss_pred             C
Q 021484          295 D  295 (312)
Q Consensus       295 ~  295 (312)
                      .
T Consensus       317 t  317 (319)
T 3frx_A          317 T  317 (319)
T ss_dssp             E
T ss_pred             e
Confidence            4

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-34  Score=238.84  Aligned_cols=236  Identities=17%  Similarity=0.296  Sum_probs=196.3

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .+|..+|++++|+|++ ++|++|+.||.|++|++.+++.              .. .+.+|...|.+++|+|++++|+++
T Consensus        20 ~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~--------------~~-~~~~h~~~v~~~~~~~~~~~l~s~   83 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKF--------------EK-TISGHKLGISDVAWSSDSNLLVSA   83 (312)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE--------------EE-EECCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCccc--------------ch-hhccCCCceEEEEEcCCCCEEEEE
Confidence            4699999999999998 8999999999999999987762              22 227889999999999999999886


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                       .|+.|++||+.++                +.+..+.+|...  |.+++| +|++++|++|+.|+.|++||+++++.+..
T Consensus        84 ~~d~~i~vwd~~~~----------------~~~~~~~~~~~~--v~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  144 (312)
T 4ery_A           84 SDDKTLKIWDVSSG----------------KCLKTLKGHSNY--VFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKCLKT  144 (312)
T ss_dssp             ETTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCCCEEEEEECCCC----------------cEEEEEcCCCCC--EEEEEE-cCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence             5999999999887                677888888866  999999 99999999999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      +..|..+|.+++|+|++++|++++.|+.|++||+++++. ..+.......+....+++++.++++++.|+.+++||+...
T Consensus       145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          145 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG  224 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            999999999999999999999999999999999988763 3332233333455668889999999999999999998754


Q ss_pred             Cccce------------eEe-ecCCCccCCCCCCCeEEEeecCCCC
Q 021484          265 QTLAY------------RER-RYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       265 ~~~~~------------~~~-~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      .....            ... .++...+.+...++.|++++...+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  270 (312)
T 4ery_A          225 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE  270 (312)
T ss_dssp             EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred             cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence            32211            111 2344556777788899999987664

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=8.9e-35  Score=239.60  Aligned_cols=219  Identities=17%  Similarity=0.196  Sum_probs=180.9

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+......+..           |..+|.+++|+|++ ++|++|+.|++|++||+.+++              +.
T Consensus        37 v~lWd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~--------------~~   90 (304)
T 2ynn_A           37 VELWNYETQVEVRSIQV-----------TETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGE--------------KV   90 (304)
T ss_dssp             EEEEETTTTEEEEEEEC-----------CSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCC--------------EE
T ss_pred             EEEEECCCCceeEEeec-----------cCCcEEEEEEeCCC-CEEEEECCCCEEEEEECCCCc--------------EE
Confidence            58999987654444432           67789999999998 899999999999999999886              22


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-  158 (312)
                      ..+ .+|...|.+++|+|++.+|+++ .|+.|++||++++.               .....+.+|...  |.+++| +| 
T Consensus        91 ~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---------------~~~~~~~~h~~~--v~~v~~-~p~  151 (304)
T 2ynn_A           91 VDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---------------ALEQTFEGHEHF--VMCVAF-NPK  151 (304)
T ss_dssp             EEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---------------EEEEEECCCCSC--EEEEEE-CTT
T ss_pred             EEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---------------chhhhhcccCCc--EEEEEE-CCC
Confidence            222 7899999999999999999987 59999999998651               344667888866  999999 77 


Q ss_pred             CCCEEEEeccCceEEEEeccCCeeEEEee-cCccceEEEEEcC--CCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhh
Q 021484          159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHP--HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI  234 (312)
Q Consensus       159 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p--~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~  234 (312)
                      ++.+|++|+.|+.|++||++++++...+. +|...+..+.|+|  ++++|++++.|++|++||+++++ +..+.+|...+
T Consensus       152 ~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v  231 (304)
T 2ynn_A          152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV  231 (304)
T ss_dssp             CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCE
Confidence            67899999999999999998877766654 4567899999987  67899999999999999999876 35566677666


Q ss_pred             hhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          235 MKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       235 ~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                       ....+++++.++++++.|+.+++||+.+..
T Consensus       232 -~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          232 -SFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             -EEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             -EEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence             444578888999999999999999987653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.5e-35  Score=246.61  Aligned_cols=236  Identities=10%  Similarity=0.070  Sum_probs=186.0

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  107 (312)
                      |..+|.+++|+|++  .|++|+.||+|++||+.+++...           .......+|...|++++|+|+|++|+++ .
T Consensus        81 ~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~-----------~~~~~~~~H~~~V~~v~~spdg~~l~sgs~  147 (344)
T 4gqb_B           81 TEAGVADLTWVGER--GILVASDSGAVELWELDENETLI-----------VSKFCKYEHDDIVSTVSVLSSGTQAVSGSK  147 (344)
T ss_dssp             ESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSCE-----------EEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCcee-----------EeeccccCCCCCEEEEEECCCCCEEEEEeC
Confidence            45679999999975  68899999999999999876210           1122235899999999999999999997 5


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCeeEEEe
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      |+.|++||+.++                +.+..+.+|...  |.+++| ++++ .+|++++.|+.|++||++++++...+
T Consensus       148 d~~i~iwd~~~~----------------~~~~~~~~h~~~--V~~~~~-~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  208 (344)
T 4gqb_B          148 DICIKVWDLAQQ----------------VVLSSYRAHAAQ--VTCVAA-SPHKDSVFLSCSEDNRILLWDTRCPKPASQI  208 (344)
T ss_dssp             TSCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-CSSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred             CCeEEEEECCCC----------------cEEEEEcCcCCc--eEEEEe-cCCCCCceeeeccccccccccccccceeeee
Confidence            999999999988                788899999976  999999 7877 57899999999999999999988877


Q ss_pred             e--cCccceEEEEEcCC-CCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCC-ceeEEecCCceEEEEEe
Q 021484          187 V--GDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGRED-HSRITLTPDVIMHVLRL  261 (312)
Q Consensus       187 ~--~~~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~i~~~  261 (312)
                      .  .|...+.+++|+|+ +++|++|+.|++|++||+++++. ..+.+|...+... .+++++ .++++++.|+.|++||+
T Consensus       209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v-~fsp~g~~~lasgs~D~~i~vwd~  287 (344)
T 4gqb_B          209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL-VFSPHSVPFLASLSEDCSLAVLDS  287 (344)
T ss_dssp             C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE-EECSSSSCCEEEEETTSCEEEECT
T ss_pred             ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE-EEccCCCeEEEEEeCCCeEEEEEC
Confidence            4  35567899999995 46789999999999999998764 5667777776444 467765 67899999999999997


Q ss_pred             cccCcc--------ce-eEeecCCCc-cCCCCCCCeEEEeecCCCC
Q 021484          262 QRRQTL--------AY-RERRYNAAD-FESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       262 ~~~~~~--------~~-~~~~~~~~~-~~~~~~~~~v~~~~~~~~~  297 (312)
                      ......        +. ..+.|+... +.+...++.|.++++....
T Consensus       288 ~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          288 SLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             CCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            654322        12 256777665 4566778889999886543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=242.54  Aligned_cols=238  Identities=17%  Similarity=0.240  Sum_probs=190.5

Q ss_pred             CCcc-ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           28 MNSI-RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        28 ~h~~-~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      +|.. .|.+++|+|++ .+|++|+.|++|++||+.++...            +...+..+|...|.+++|+|++++|+++
T Consensus        13 ~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~~------------~~~~~~~~h~~~v~~~~~sp~g~~l~s~   79 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSWI------------CKSVLSEGHQRTVRKVAWSPCGNYLASA   79 (345)
T ss_dssp             CSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEEE------------EEEEECSSCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCcce------------eeeeeccccCCcEEEEEECCCCCEEEEE
Confidence            4777 89999999999 89999999999999999876521            1222336899999999999999999997


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC---ee
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---KL  182 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~---~~  182 (312)
                       .|+.+++|++..+.              .+....+.+|...  |.+++| +|++++|++|+.|+.|++||++++   ++
T Consensus        80 s~D~~v~iw~~~~~~--------------~~~~~~~~~h~~~--v~~v~~-sp~~~~l~s~s~D~~v~iwd~~~~~~~~~  142 (345)
T 3fm0_A           80 SFDATTCIWKKNQDD--------------FECVTTLEGHENE--VKSVAW-APSGNLLATCSRDKSVWVWEVDEEDEYEC  142 (345)
T ss_dssp             ETTSCEEEEEECCC---------------EEEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred             ECCCcEEEEEccCCC--------------eEEEEEccCCCCC--ceEEEE-eCCCCEEEEEECCCeEEEEECCCCCCeEE
Confidence             59999999987641              1245677888866  999999 999999999999999999999875   34


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC---CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEE
Q 021484          183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL  259 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~  259 (312)
                      +..+.+|...|.+++|+|++++|++++.|++|++|+...+.   ...+.+|...+.. ..+++++.++++++.|+.+++|
T Consensus       143 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~-l~~sp~g~~l~s~s~D~~v~iW  221 (345)
T 3fm0_A          143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS-LAFDPSGQRLASCSDDRTVRIW  221 (345)
T ss_dssp             EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE-EEECTTSSEEEEEETTSCEEEE
T ss_pred             EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEE-EEECCCCCEEEEEeCCCeEEEe
Confidence            66778899999999999999999999999999999988764   2456667766644 4578899999999999999999


Q ss_pred             EecccC-------------------------ccce-eEeecCCCccCCCCCCCeEEEeecCCC
Q 021484          260 RLQRRQ-------------------------TLAY-RERRYNAADFESDEEEGETYLLGFSDS  296 (312)
Q Consensus       260 ~~~~~~-------------------------~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~  296 (312)
                      +.....                         ..++ ..+.+....+.+...++.+.+++...+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred             ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence            964321                         1111 145556666666666777888876544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-34  Score=239.60  Aligned_cols=262  Identities=16%  Similarity=0.204  Sum_probs=183.4

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.......+.....       .+|...|++++|+|++ .+|++|+.|++|++||+......        ......
T Consensus        36 i~lw~~~~~~~~~~~~~~~-------~~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~--------~~~~~~   99 (330)
T 2hes_X           36 IKLVSVKYDDFTLIDVLDE-------TAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADR--------TFEMDL   99 (330)
T ss_dssp             EEEEECSSSCCEEEEEECT-------TCCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC---------------CCCEE
T ss_pred             EEEEEecCCCeEEEEEEec-------CCccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCc--------ccccee
Confidence            5789987653222221111       1288899999999998 89999999999999998643200        000012


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ...+.+|...|.+++|+|++++|+++ .|+.|++||+....            ...+.+..+.+|...  |.+++| +|+
T Consensus       100 ~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~------------~~~~~~~~~~~h~~~--v~~v~~-~p~  164 (330)
T 2hes_X          100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG------------EEYECISVLQEHSQD--VKHVIW-HPS  164 (330)
T ss_dssp             EEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC------------CCCEEEEEECCCSSC--EEEEEE-CSS
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC------------CCeEEEEEeccCCCc--eEEEEE-CCC
Confidence            22337899999999999999999997 59999999995320            001345667788866  999999 999


Q ss_pred             CCEEEEeccCceEEEEeccCC--eeEEEeecCccceEEEEEcCC--CCeEEEEeCCCcEEEccCCCCC---------CCC
Q 021484          160 DEYVMSGSDCGHLFIWKKKGG--KLVRLMVGDRHVVNQLEPHPH--IPMFATCGIEKTVKLWAPMPTD---------FPP  226 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~p~--~~~l~t~~~d~~i~iwd~~~~~---------~~~  226 (312)
                      +++|++++.|+.|++||..++  +++..+.+|...|.+++|+|+  +..|++++.|++|++|++....         ...
T Consensus       165 ~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~  244 (330)
T 2hes_X          165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI  244 (330)
T ss_dssp             SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeee
Confidence            999999999999999998876  678889999999999999998  6789999999999999987542         122


Q ss_pred             CCC-ChhhhhhhhccCCCCceeEEecCCceEEEEEecccCc-------------cce-eEeec--CCCccCCCCCCCeEE
Q 021484          227 LPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT-------------LAY-RERRY--NAADFESDEEEGETY  289 (312)
Q Consensus       227 ~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~-------------~~~-~~~~~--~~~~~~~~~~~~~v~  289 (312)
                      +.. |...+.... +++ +.++++++.|+.+++|+......             .+. ..+.+  ++..+++...++.|.
T Consensus       245 ~~~~h~~~v~~v~-~s~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~  322 (330)
T 2hes_X          245 LPDVHKRQVYNVA-WGF-NGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVN  322 (330)
T ss_dssp             CCSCCSSCEEEEE-ECT-TSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEE
T ss_pred             cccccccceEEEE-EcC-CCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEE
Confidence            333 555554443 443 45899999999999999764310             111 13344  455677777778888


Q ss_pred             EeecCC
Q 021484          290 LLGFSD  295 (312)
Q Consensus       290 ~~~~~~  295 (312)
                      +|++..
T Consensus       323 ~W~~~~  328 (330)
T 2hes_X          323 FWSLEK  328 (330)
T ss_dssp             EEEC--
T ss_pred             EEEecc
Confidence            887643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6e-34  Score=238.76  Aligned_cols=259  Identities=15%  Similarity=0.192  Sum_probs=194.5

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+|||+...........        ..+|...|++++|+|++ ++|++|+.|+++++|++..+..             ..
T Consensus        40 i~iw~~~~~~~~~~~~~--------~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~~~-------------~~   97 (345)
T 3fm0_A           40 IRIWGTEGDSWICKSVL--------SEGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQDDF-------------EC   97 (345)
T ss_dssp             EEEEEEETTEEEEEEEE--------CSSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC-E-------------EE
T ss_pred             EEEEEcCCCcceeeeee--------ccccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccCCCe-------------EE
Confidence            57888876542211111        12589999999999998 8999999999999999886642             11


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ...+.+|...|.+++|+|++++|+++ .|+.|++||+..+.             .......+.+|...  |.+++| +|+
T Consensus        98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~-------------~~~~~~~~~~h~~~--v~~~~~-~p~  161 (345)
T 3fm0_A           98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED-------------EYECVSVLNSHTQD--VKHVVW-HPS  161 (345)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS-------------CEEEEEEECCCCSC--EEEEEE-CSS
T ss_pred             EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC-------------CeEEEEEecCcCCC--eEEEEE-CCC
Confidence            22237899999999999999999997 59999999997651             00234566778766  999999 999


Q ss_pred             CCEEEEeccCceEEEEeccCCe--eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCC----------
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPP----------  226 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~----------  226 (312)
                      +++|++++.|+.|++||.++++  +...+.+|...|.+++|+|++++|++++.|++|++|+..... ...          
T Consensus       162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~  241 (345)
T 3fm0_A          162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW  241 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred             CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence            9999999999999999998875  456788999999999999999999999999999999964321 111          


Q ss_pred             -----CCC-ChhhhhhhhccCCCCceeEEecCCceEEEEEecccC------------------ccce-eEeecCC-CccC
Q 021484          227 -----LPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ------------------TLAY-RERRYNA-ADFE  280 (312)
Q Consensus       227 -----~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~------------------~~~~-~~~~~~~-~~~~  280 (312)
                           +.+ |...+ ....+++++..+++++.|+.+++|+.....                  ..+. ..+.|+. ..++
T Consensus       242 ~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la  320 (345)
T 3fm0_A          242 KCICTLSGFHSRTI-YDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLA  320 (345)
T ss_dssp             EEEEEECSSCSSCE-EEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEE
T ss_pred             ceeEEecCCCCCcE-EEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEE
Confidence                 111 33333 344467788899999999999999975431                  1111 2566665 3677


Q ss_pred             CCCCCCeEEEeecCCCCC
Q 021484          281 SDEEEGETYLLGFSDSDA  298 (312)
Q Consensus       281 ~~~~~~~v~~~~~~~~~~  298 (312)
                      +..+++.|.+|+...+..
T Consensus       321 S~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          321 SCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             EEETTSCEEEEEECC---
T ss_pred             EcCCCCcEEEEEecCCCC
Confidence            888888899998876554

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.5e-34  Score=240.32  Aligned_cols=251  Identities=14%  Similarity=0.152  Sum_probs=193.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||..+.+....+..           |...|.+++|+|++ .+|++|+.|+.+++|++......       ..  ...
T Consensus        88 v~vWd~~~~~~~~~~~~-----------~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~~~~~~~-------~~--~~~  146 (354)
T 2pbi_B           88 VIVWDSFTTNKEHAVTM-----------PCTWVMACAYAPSG-CAIACGGLDNKCSVYPLTFDKNE-------NM--AAK  146 (354)
T ss_dssp             EEEEETTTCCEEEEEEC-----------SSSCCCEEEECTTS-SEEEEESTTSEEEEEECCCCTTC-------CS--GGG
T ss_pred             EEEEECCCCCcceEEec-----------CCCCEEEEEECCCC-CEEEEeeCCCCEEEEEEeccccc-------cc--ccc
Confidence            57899877654444332           56789999999999 89999999999999998754310       00  011


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-  158 (312)
                      ...+..|...|.+++|+|++..|+++ .|++|++||+.++                +.+..+.+|...  |.+++| +| 
T Consensus       147 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~  207 (354)
T 2pbi_B          147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG----------------QLLQSFHGHGAD--VLCLDL-APS  207 (354)
T ss_dssp             CEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-CCC
T ss_pred             ceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC----------------eEEEEEcCCCCC--eEEEEE-EeC
Confidence            22236799999999999999988886 5999999999987                788889999866  999998 66 


Q ss_pred             -CCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCCh-hhhh
Q 021484          159 -NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNA-EKIM  235 (312)
Q Consensus       159 -~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~-~~~~  235 (312)
                       ++++|++|+.||.|++||+++++++..+.+|...|++++|+|++.+|++++.|++|++||++.... ..+..+. ....
T Consensus       208 ~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~  287 (354)
T 2pbi_B          208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA  287 (354)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence             578999999999999999999999999999999999999999999999999999999999987642 1111111 1112


Q ss_pred             hhhccCCCCceeEEecCCceEEEEEecccCcc---------c-eeEeecCCCccCCCCCCCeEEEe
Q 021484          236 KANKQGREDHSRITLTPDVIMHVLRLQRRQTL---------A-YRERRYNAADFESDEEEGETYLL  291 (312)
Q Consensus       236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~v~~~  291 (312)
                      ....+++++.++++++.|+.+++||+......         + ...+.|++..+.+...++.|.+|
T Consensus       288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             eEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence            34457788999999999999999998654322         1 11455555555555555555554

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=9.2e-35  Score=246.90  Aligned_cols=252  Identities=13%  Similarity=0.112  Sum_probs=196.0

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||..+|++++|+|++ ++|++|+.|++|++||+.+++.              ...+ ..|...|.+++|+|++++|+++
T Consensus        63 ~gH~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~~~~--------------~~~~-~~h~~~v~~~~~s~~g~~las~  126 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQK--------------THAI-KLHCPWVMECAFAPNGQSVACG  126 (380)
T ss_dssp             CCCSSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEE--------------EEEE-ECCCTTCCCCEECTTSSEEEEC
T ss_pred             cccccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcc--------------ceEE-ecCCCCEEEEEECCCCCEEEEe
Confidence            4699999999999998 8999999999999999988762              2222 6778888899999999988886


Q ss_pred             -cCCcEEEEEcCCCc----------------------------------CCCCCcCCcccccCCCCCceE-----ecccC
Q 021484          107 -NDELVYLFEKNMGL----------------------------------GPSPLSLSPEDLQKREEPQVY-----SGHRN  146 (312)
Q Consensus       107 -~d~~i~iwd~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~  146 (312)
                       .|+.+++|++.+..                                  +..+..+..|++.+.+.+..+     .+|..
T Consensus       127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~  206 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA  206 (380)
T ss_dssp             CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred             eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence             59999999875421                                  011233455556655555555     45665


Q ss_pred             CceeeEEEEecCCCCEEEEeccCceEEEEecc-CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-
Q 021484          147 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-  224 (312)
Q Consensus       147 ~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-  224 (312)
                      .  |.+++|.++++++|++|+.|+.|++||++ .++.+..+.+|...|.+++|+|++++|++++.|++|++||++++.. 
T Consensus       207 ~--v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~  284 (380)
T 3iz6_a          207 D--VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL  284 (380)
T ss_dssp             C--EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred             C--eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence            5  99999944589999999999999999998 5577888999999999999999999999999999999999988652 


Q ss_pred             CCCCCC------hhhhhhhhccCCCCceeEEecCCceEEEEEecccCc-------------c-ceeEeecCCCccCCCCC
Q 021484          225 PPLPDN------AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT-------------L-AYRERRYNAADFESDEE  284 (312)
Q Consensus       225 ~~~~~~------~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~  284 (312)
                      ..+..+      ....+....+++++.++++++.|+.+++||+.....             . ....+.|++..+.++..
T Consensus       285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  364 (380)
T 3iz6_a          285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW  364 (380)
T ss_dssp             EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred             EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence            111111      112345566888999999999999999999643221             1 12267888888999988


Q ss_pred             CCeEEEeecCCC
Q 021484          285 EGETYLLGFSDS  296 (312)
Q Consensus       285 ~~~v~~~~~~~~  296 (312)
                      ++.+.+|+++..
T Consensus       365 D~~i~iW~~~~~  376 (380)
T 3iz6_a          365 DKNLKIWAFSGH  376 (380)
T ss_dssp             TSCEEEEECCSS
T ss_pred             CCCEEEEecCCC
Confidence            999999998654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5e-34  Score=238.76  Aligned_cols=238  Identities=12%  Similarity=0.145  Sum_probs=196.5

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .+|..+|++++|+|++ ++|++|+.||+|++||+.+++.              ...+ ..|...|.+++|+|++++|+++
T Consensus        52 ~gH~~~v~~~~~s~d~-~~l~s~s~Dg~v~iWd~~~~~~--------------~~~~-~~~~~~v~~~~~s~~~~~l~s~  115 (340)
T 1got_B           52 RGHLAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYTTNK--------------VHAI-PLRSSWVMTCAYAPSGNYVACG  115 (340)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCCE--------------EEEE-ECSSSCEEEEEECTTSSEEEEE
T ss_pred             cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCCc--------------ceEe-ecCCccEEEEEECCCCCEEEEE
Confidence            4799999999999998 8999999999999999988762              2222 6788899999999999999987


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                       .|+.+++|++.+...            .......+.+|...  |.++.| ++++. +++++.|+.|++||+.+++++..
T Consensus       116 ~~d~~v~iw~~~~~~~------------~~~~~~~~~~h~~~--v~~~~~-~~~~~-l~s~s~d~~i~~wd~~~~~~~~~  179 (340)
T 1got_B          116 GLDNICSIYNLKTREG------------NVRVSRELAGHTGY--LSCCRF-LDDNQ-IVTSSGDTTCALWDIETGQQTTT  179 (340)
T ss_dssp             ETTCEEEEEETTTCSB------------SCEEEEEEECCSSC--EEEEEE-EETTE-EEEEETTSCEEEEETTTTEEEEE
T ss_pred             eCCCeEEEEECccCCC------------cceeEEEecCCCcc--EEEEEE-CCCCc-EEEEECCCcEEEEECCCCcEEEE
Confidence             599999999976410            01234567788866  999999 66665 88999999999999999999999


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      +.+|.+.|.+++|+|+++++++++.|++|++||++++.. ..+.+|...+ ....+++++.++++++.|+.+++||++..
T Consensus       180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v-~~v~~~p~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI-NAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCE-EEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence            999999999999999999999999999999999988763 5566666666 44457889999999999999999998654


Q ss_pred             Ccc------------ceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          265 QTL------------AYRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       265 ~~~------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      ...            ....+.|++..+.++..++.+.++|...+.
T Consensus       259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  303 (340)
T 1got_B          259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence            221            112677888888888888999999976553

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.8e-33  Score=235.72  Aligned_cols=230  Identities=14%  Similarity=0.148  Sum_probs=177.1

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      +|...|++++|+|++ .++++|+.|++|++||+++++.              ...+ .+|...|.+++|+|++++|+++ 
T Consensus        74 ~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~~~~--------------~~~~-~~h~~~v~~v~~sp~~~~l~s~~  137 (343)
T 2xzm_R           74 GHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRTGTT--------------YKRF-VGHQSEVYSVAFSPDNRQILSAG  137 (343)
T ss_dssp             CCSSCEEEEEECSST-TEEEEEETTSEEEEEETTSSCE--------------EEEE-ECCCSCEEEEEECSSTTEEEEEE
T ss_pred             cCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCcE--------------EEEE-cCCCCcEEEEEECCCCCEEEEEc
Confidence            589999999999998 8999999999999999998862              2222 7899999999999999988886 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceE---ecccCCceeeEEEEecCCC----------CEEEEeccCceEE
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY---SGHRNSQTVKGVNFFGPND----------EYVMSGSDCGHLF  173 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~v~~~s~~~----------~~l~~~~~dg~v~  173 (312)
                      .|+.|++||+...                 .....   .+|...  |.+++| +|++          .+|++++.||.|+
T Consensus       138 ~d~~i~~wd~~~~-----------------~~~~~~~~~~~~~~--v~~~~~-~~~~~~~~~~~~~~~~l~s~~~d~~i~  197 (343)
T 2xzm_R          138 AEREIKLWNILGE-----------------CKFSSAEKENHSDW--VSCVRY-SPIMKSANKVQPFAPYFASVGWDGRLK  197 (343)
T ss_dssp             TTSCEEEEESSSC-----------------EEEECCTTTSCSSC--EEEEEE-CCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred             CCCEEEEEeccCC-----------------ceeeeecccCCCce--eeeeee-ccccccccccCCCCCEEEEEcCCCEEE
Confidence            5999999999743                 21112   245544  999999 8876          7899999999999


Q ss_pred             EEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecC
Q 021484          174 IWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTP  252 (312)
Q Consensus       174 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  252 (312)
                      +||. ..+....+.+|...|.+++|+|++++|++++.|++|++||+.... ......+... +....+++++.+++ ++.
T Consensus       198 iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~-v~~v~~sp~~~~la-~~~  274 (343)
T 2xzm_R          198 VWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGST-INQIAFNPKLQWVA-VGT  274 (343)
T ss_dssp             EEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSC-EEEEEECSSSCEEE-EEE
T ss_pred             EEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCc-EEEEEECCCCCEEE-EEC
Confidence            9994 567778889999999999999999999999999999999995432 2211112222 34455777776654 556


Q ss_pred             CceEEEEEecccCccc-----------------------eeEeecCCCccCCCCCCCeEEEeecCCC
Q 021484          253 DVIMHVLRLQRRQTLA-----------------------YRERRYNAADFESDEEEGETYLLGFSDS  296 (312)
Q Consensus       253 d~~i~i~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~  296 (312)
                      |+.+++|++.......                       -..+.|++..+.++..++.|.+|++..+
T Consensus       275 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          275 DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            8889999986532211                       1256677777777777778888876543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.6e-34  Score=241.99  Aligned_cols=237  Identities=11%  Similarity=0.110  Sum_probs=181.2

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      +|...|++++|+|++  .+++++.||+|++||+.+++....           ......+|...|.+++|+|++++|+++ 
T Consensus        92 ~~~~~V~~~~~s~d~--~~l~~s~dg~v~lWd~~~~~~~~~-----------~~~~~~~h~~~V~~v~~spdg~~l~sgs  158 (357)
T 4g56_B           92 QTEAGVTDVAWVSEK--GILVASDSGAVELWEILEKESLLV-----------NKFAKYEHDDIVKTLSVFSDGTQAVSGG  158 (357)
T ss_dssp             ECSSCEEEEEEETTT--EEEEEETTSCEEEC--------CC-----------CCEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred             CCCCCEEEEEEcCCC--CEEEEECCCEEEEeeccccceeEE-----------EeeccCCCCCCEEEEEECCCCCEEEEEe
Confidence            378899999999987  456778899999999988763211           111225789999999999999999987 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCC-EEEEeccCceEEEEeccCCeeEEE
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                      .|+.|++||+.++                +.+..+.+|...  |.+++| ++++. ++++++.||.|++||+++++++..
T Consensus       159 ~dg~v~iwd~~~~----------------~~~~~~~~h~~~--v~~v~~-s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~  219 (357)
T 4g56_B          159 KDFSVKVWDLSQK----------------AVLKSYNAHSSE--VNCVAA-CPGKDTIFLSCGEDGRILLWDTRKPKPATR  219 (357)
T ss_dssp             TTSCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-CTTCSSCEEEEETTSCEEECCTTSSSCBCB
T ss_pred             CCCeEEEEECCCC----------------cEEEEEcCCCCC--EEEEEE-ccCCCceeeeeccCCceEEEECCCCceeee
Confidence            5999999999987                788888899866  999999 78764 789999999999999999887765


Q ss_pred             ee--cCccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCC-CceeEEecCCceEEEEE
Q 021484          186 MV--GDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGRE-DHSRITLTPDVIMHVLR  260 (312)
Q Consensus       186 ~~--~~~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~i~~  260 (312)
                      +.  .|...+.+++|+|++ .+|++++.|+.|++||+++++ ...+..+...+... .++++ ..++++++.|+.|++||
T Consensus       220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l-~~sp~~~~~lasgs~D~~i~iwd  298 (357)
T 4g56_B          220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL-AYSYHSSPFLASISEDCTVAVLD  298 (357)
T ss_dssp             CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE-EECSSSSCCEEEEETTSCEEEEC
T ss_pred             eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE-EEcCCCCCEEEEEeCCCEEEEEE
Confidence            54  466789999999985 568899999999999998876 35566677666444 46665 46889999999999999


Q ss_pred             ecccCcc--------ce-eEeec-CCCccCCCCCCCeEEEeecCCCC
Q 021484          261 LQRRQTL--------AY-RERRY-NAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       261 ~~~~~~~--------~~-~~~~~-~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      ++.....        +. ..+.| +...+++...++.|++|++....
T Consensus       299 ~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          299 ADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             TTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             CCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            8764322        11 25666 56778888888899999985543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.5e-33  Score=252.09  Aligned_cols=217  Identities=15%  Similarity=0.256  Sum_probs=175.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+           .+|...|++++|+|++ ++||+|+.|++|++||+.+++.             ..
T Consensus        41 v~l~~~~~~~~~~~~-----------~~h~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~~~~-------------~~   95 (611)
T 1nr0_A           41 VYTVPVGSLTDTEIY-----------TEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTH-------------IL   95 (611)
T ss_dssp             EEEEETTCSSCCEEE-----------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTC-------------CE
T ss_pred             EEEecCCCcccCeEe-----------cCCCCceEEEEECCCC-cEEEEEeCCCCEEEeECCCCcc-------------ee
Confidence            457777654433333           2488999999999999 8999999999999999975531             11


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEec-C----CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISYN-D----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  155 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  155 (312)
                      ...+..|...|.+++|+|++++|++++ +    +.|++||.  +                .....+.+|...  |.+++|
T Consensus        96 ~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~----------------~~~~~l~gh~~~--v~~v~f  155 (611)
T 1nr0_A           96 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--G----------------TSNGNLTGQARA--MNSVDF  155 (611)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--C----------------CBCBCCCCCSSC--EEEEEE
T ss_pred             eEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--C----------------CCcceecCCCCC--ceEEEE
Confidence            222367899999999999999888754 3    36788874  3                455667888866  999999


Q ss_pred             ecCCCC-EEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCC-----
Q 021484          156 FGPNDE-YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP-----  228 (312)
Q Consensus       156 ~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~-----  228 (312)
                       +|++. .|++|+.|++|++||..+++++..+.+|...|.+++|+|++++|++++.|++|++||+.+++. ..+.     
T Consensus       156 -~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~  234 (611)
T 1nr0_A          156 -KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK  234 (611)
T ss_dssp             -CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred             -CCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccc
Confidence             89987 599999999999999999999999999999999999999999999999999999999887653 2221     


Q ss_pred             --CChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          229 --DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       229 --~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                        +|...+. ...+++++.++++++.|+.+++||+...
T Consensus       235 ~~~h~~~V~-~v~~spdg~~l~s~s~D~~v~lWd~~~~  271 (611)
T 1nr0_A          235 NVAHSGSVF-GLTWSPDGTKIASASADKTIKIWNVATL  271 (611)
T ss_dssp             SCSSSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ccccCCCEE-EEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence              4666664 4457889999999999999999997643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.7e-33  Score=234.72  Aligned_cols=241  Identities=10%  Similarity=0.117  Sum_probs=196.8

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||..+|++++|+|++ .+|++|+.||+|++||..+++.              ...+ ..|...|.+++|+|++.+|+++
T Consensus        61 ~gH~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~~~~--------------~~~~-~~~~~~v~~~~~sp~g~~lasg  124 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTTNK--------------EHAV-TMPCTWVMACAYAPSGCAIACG  124 (354)
T ss_dssp             ECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE--------------EEEE-ECSSSCCCEEEECTTSSEEEEE
T ss_pred             cCCCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCc--------------ceEE-ecCCCCEEEEEECCCCCEEEEe
Confidence            4799999999999998 8999999999999999987752              2222 5577889999999999999997


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                       .|+.+++|++......          ........+.+|...  |.+++| +|++..|++++.|++|++||+.+++++..
T Consensus       125 ~~d~~i~v~~~~~~~~~----------~~~~~~~~~~~h~~~--v~~~~~-~~~~~~l~t~s~D~~v~lwd~~~~~~~~~  191 (354)
T 2pbi_B          125 GLDNKCSVYPLTFDKNE----------NMAAKKKSVAMHTNY--LSACSF-TNSDMQILTASGDGTCALWDVESGQLLQS  191 (354)
T ss_dssp             STTSEEEEEECCCCTTC----------CSGGGCEEEEECSSC--EEEEEE-CSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             eCCCCEEEEEEeccccc----------cccccceeeeccCCc--EEEEEE-eCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Confidence             5999999998653110          001344567788866  999999 99999999999999999999999999999


Q ss_pred             eecCccceEEEEEcC--CCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          186 MVGDRHVVNQLEPHP--HIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p--~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      +.+|...|.+++|+|  ++++|++++.|++|++||++++.. ..+..|...+. ...+++++.++++++.|+.+++||++
T Consensus       192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~-~v~~~p~~~~l~s~s~D~~v~lwd~~  270 (354)
T 2pbi_B          192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVN-SVRYYPSGDAFASGSDDATCRLYDLR  270 (354)
T ss_dssp             EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeE-EEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            999999999999988  467999999999999999998764 45566666664 44578889999999999999999986


Q ss_pred             ccCcc------------ceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          263 RRQTL------------AYRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       263 ~~~~~------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      .....            ....+.+++..+.+...++.+.+||...+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  317 (354)
T 2pbi_B          271 ADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS  317 (354)
T ss_dssp             TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred             CCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence            54211            122567778888888888889999986654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.1e-33  Score=229.82  Aligned_cols=219  Identities=15%  Similarity=0.248  Sum_probs=179.0

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+.           +|...|.+++|+|++ ++|++++.|+.|++||+.++++              .
T Consensus        47 i~iw~~~~~~~~~~~~-----------~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~--------------~  100 (312)
T 4ery_A           47 IKIWGAYDGKFEKTIS-----------GHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSSGKC--------------L  100 (312)
T ss_dssp             EEEEETTTCCEEEEEC-----------CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE--------------E
T ss_pred             EEEEeCCCcccchhhc-----------cCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCCCcE--------------E
Confidence            5788887665433332           378899999999998 8999999999999999998762              2


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+ .+|...|.+++|+|++++|+++ .|+.|++||++++                +....+..|...  |.+++| +|+
T Consensus       101 ~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------~~~~~~~~~~~~--v~~~~~-~~~  160 (312)
T 4ery_A          101 KTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG----------------KCLKTLPAHSDP--VSAVHF-NRD  160 (312)
T ss_dssp             EEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC----------------CEEEEECCCSSC--EEEEEE-CTT
T ss_pred             EEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------------EEEEEecCCCCc--EEEEEE-cCC
Confidence            222 6789999999999999999987 5999999999887                677788888866  999999 999


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhh--
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIM--  235 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~--  235 (312)
                      +++|++++.||.|++||+++++.+..+. .+...+..++|+|++++|++++.|+.|++||+++++. ..+.++.....  
T Consensus       161 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  240 (312)
T 4ery_A          161 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI  240 (312)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCC
T ss_pred             CCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEE
Confidence            9999999999999999999998887764 4567899999999999999999999999999988753 33444433321  


Q ss_pred             hhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          236 KANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      ......+++.++++++.|+.+++|++....
T Consensus       241 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  270 (312)
T 4ery_A          241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKE  270 (312)
T ss_dssp             CEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred             EEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence            222233567899999999999999987653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.9e-33  Score=227.95  Aligned_cols=236  Identities=14%  Similarity=0.158  Sum_probs=187.2

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC--CCeEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLI  104 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~  104 (312)
                      .+|...|++++|+|++ ++|++|+.|++|++||+.....             .....+.+|...|.+++|+|+  +++|+
T Consensus         6 ~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~~~-------------~~~~~l~gH~~~V~~v~~s~~~~g~~l~   71 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETH-------------KLIDTLTGHEGPVWRVDWAHPKFGTILA   71 (297)
T ss_dssp             CSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSSCB-------------CCCEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             cCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCCCc-------------EEEEEEccccCCeEEEEecCCCcCCEEE
Confidence            4699999999999999 8999999999999999975321             112223789999999999864  78899


Q ss_pred             Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC--CCEEEEeccCceEEEEeccCCe
Q 021484          105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~--~~~l~~~~~dg~v~iwd~~~~~  181 (312)
                      ++ .|++|++||+.++.              ......+.+|...  |.+++| +|+  +.+|++++.|+.|++||++++.
T Consensus        72 s~s~D~~v~iWd~~~~~--------------~~~~~~~~~h~~~--v~~v~~-~p~~~g~~l~s~s~d~~v~~wd~~~~~  134 (297)
T 2pm7_B           72 SCSYDGKVMIWKEENGR--------------WSQIAVHAVHSAS--VNSVQW-APHEYGPMLLVASSDGKVSVVEFKENG  134 (297)
T ss_dssp             EEETTTEEEEEEBSSSC--------------BCCCEEECCCSSC--EEEEEE-CCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred             EEcCCCEEEEEEcCCCc--------------eEEEEEeecCCCc--eeEEEe-CcCCCCcEEEEEECCCcEEEEEecCCC
Confidence            87 59999999998751              0244566778766  999999 887  8899999999999999998753


Q ss_pred             --eEEEeecCccceEEEEEcCC-------------CCeEEEEeCCCcEEEccCCCCC-----CCCCCCChhhhhhhhccC
Q 021484          182 --LVRLMVGDRHVVNQLEPHPH-------------IPMFATCGIEKTVKLWAPMPTD-----FPPLPDNAEKIMKANKQG  241 (312)
Q Consensus       182 --~~~~~~~~~~~v~~~~~~p~-------------~~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~  241 (312)
                        ....+.+|...|.+++|+|+             +++|++++.|++|++||+++..     ...+.+|...+.... ++
T Consensus       135 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~-~s  213 (297)
T 2pm7_B          135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA-WS  213 (297)
T ss_dssp             CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE-EC
T ss_pred             ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE-EC
Confidence              24567789999999999997             4689999999999999988754     245667777775444 66


Q ss_pred             CC---CceeEEecCCceEEEEEecccC--------------ccce-eEeecCCCccCCCCCCCeEEEeecC
Q 021484          242 RE---DHSRITLTPDVIMHVLRLQRRQ--------------TLAY-RERRYNAADFESDEEEGETYLLGFS  294 (312)
Q Consensus       242 ~~---~~~l~s~~~d~~i~i~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~  294 (312)
                      ++   +.++++++.|+.+++|++....              ..++ ..+.|++..+++...++.|.+|+..
T Consensus       214 p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          214 PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            65   4899999999999999986531              1111 2667788888888888889998864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.5e-32  Score=225.49  Aligned_cols=223  Identities=11%  Similarity=0.149  Sum_probs=172.0

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCC--CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   78 (312)
                      |+|||+.......+...         .+|..+|++++|+|.  + ++|++|+.|++|++||+.+++..            
T Consensus        33 v~iw~~~~~~~~~~~~l---------~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~iWd~~~~~~~------------   90 (297)
T 2pm7_B           33 IKIFEVEGETHKLIDTL---------TGHEGPVWRVDWAHPKFG-TILASCSYDGKVMIWKEENGRWS------------   90 (297)
T ss_dssp             EEEEEBCSSCBCCCEEE---------CCCSSCEEEEEECCGGGC-SEEEEEETTTEEEEEEBSSSCBC------------
T ss_pred             EEEEecCCCCcEEEEEE---------ccccCCeEEEEecCCCcC-CEEEEEcCCCEEEEEEcCCCceE------------
Confidence            57888764322222221         358999999999864  5 79999999999999999876421            


Q ss_pred             cccccccCCCccEEEEEEccC--CCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE
Q 021484           79 CPRHLIGKNNIHITGLAYSNT--SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  155 (312)
Q Consensus        79 ~~~~~~~~~~~~i~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  155 (312)
                       ....+..|...|.+++|+|+  +.+|+++ .|+.|++||+++..              ......+.+|...  |.+++|
T Consensus        91 -~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~--------------~~~~~~~~~h~~~--v~~~~~  153 (297)
T 2pm7_B           91 -QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG--------------TTSPIIIDAHAIG--VNSASW  153 (297)
T ss_dssp             -CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS--------------CBCCEEEECCSSC--EEEEEE
T ss_pred             -EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC--------------ceeeeeeecccCc--cceEee
Confidence             11122678999999999997  7888886 59999999997641              0123566788866  999999


Q ss_pred             ecCC-------------CCEEEEeccCceEEEEeccCCe----eEEEeecCccceEEEEEcCCC---CeEEEEeCCCcEE
Q 021484          156 FGPN-------------DEYVMSGSDCGHLFIWKKKGGK----LVRLMVGDRHVVNQLEPHPHI---PMFATCGIEKTVK  215 (312)
Q Consensus       156 ~s~~-------------~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~p~~---~~l~t~~~d~~i~  215 (312)
                       +|+             +++|++|+.|+.|++||+++++    ....+.+|...|.+++|+|++   .+|++++.|++|+
T Consensus       154 -~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~  232 (297)
T 2pm7_B          154 -APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI  232 (297)
T ss_dssp             -CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred             -cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEE
Confidence             786             5799999999999999998765    567788999999999999985   7899999999999


Q ss_pred             EccCCCCCC----CCC--CCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          216 LWAPMPTDF----PPL--PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       216 iwd~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      +||++....    ..+  ..+...+ ....+++++.+|++++.|+.+++|+....
T Consensus       233 iWd~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          233 IWTQDNEQGPWKKTLLKEEKFPDVL-WRASWSLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             EEEESSTTSCCEEEESSSSCCSSCE-EEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             EEEeCCCCCccceeeeecccCCCcE-EEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence            999876421    112  2344444 34457889999999999999999997643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-33  Score=230.16  Aligned_cols=240  Identities=15%  Similarity=0.228  Sum_probs=178.0

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccc-ccCCCccEEEEEEccCCCeEEEe
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      +|..+|.+++|+|+   +|++|+.|++|++||+..+...            ....+ ..+|...|.+++|+|++++|+++
T Consensus        12 ~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~------------~~~~~~~~~h~~~v~~v~~sp~~~~las~   76 (330)
T 2hes_X           12 LYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFT------------LIDVLDETAHKKAIRSVAWRPHTSLLAAG   76 (330)
T ss_dssp             CCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCE------------EEEEECTTCCCSCEEEEEECTTSSEEEEE
T ss_pred             cCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeE------------EEEEEecCCccCCEEEEEECCCCCEEEEE
Confidence            58999999999985   8999999999999999865310            11112 13489999999999999999997


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC----Ce
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----GK  181 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~----~~  181 (312)
                       .|+.|++||+.....         .....+....+.+|...  |.+++| +|++++|++|+.|+.|++||++.    .+
T Consensus        77 s~D~~v~iw~~~~~~~---------~~~~~~~~~~~~~h~~~--V~~v~~-sp~g~~las~s~D~~v~iwd~~~~~~~~~  144 (330)
T 2hes_X           77 SFDSTVSIWAKEESAD---------RTFEMDLLAIIEGHENE--VKGVAW-SNDGYYLATCSRDKSVWIWETDESGEEYE  144 (330)
T ss_dssp             ETTSCEEEEEC----------------CCCEEEEEEC----C--EEEEEE-CTTSCEEEEEETTSCEEEEECCTTCCCCE
T ss_pred             eCCCcEEEEEcccCcC---------ccccceeEEEEcCCCCc--EEEEEE-CCCCCEEEEEeCCCEEEEEeccCCCCCeE
Confidence             599999999864210         00011345667888866  999999 99999999999999999999943    35


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC---CCCCCCCChhhhhhhhccCCC--CceeEEecCCceE
Q 021484          182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT---DFPPLPDNAEKIMKANKQGRE--DHSRITLTPDVIM  256 (312)
Q Consensus       182 ~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~i  256 (312)
                      ++..+.+|...|.+++|+|++.+|++++.|++|++||...+   .+..+.+|...+.... ++++  +..+++++.|+.+
T Consensus       145 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~l~s~s~D~~v  223 (330)
T 2hes_X          145 CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD-FDKTEGVFRLCSGSDDSTV  223 (330)
T ss_dssp             EEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE-ECCSSSSCEEEEEETTSCE
T ss_pred             EEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEE-ecCCCCeeEEEEEeCCCeE
Confidence            67788899999999999999999999999999999998765   2455667777765444 5665  5689999999999


Q ss_pred             EEEEecccCc------------------ccee-EeecCCCccCCCCCCCeEEEeecCCC
Q 021484          257 HVLRLQRRQT------------------LAYR-ERRYNAADFESDEEEGETYLLGFSDS  296 (312)
Q Consensus       257 ~i~~~~~~~~------------------~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~  296 (312)
                      ++|++.....                  .++. .+.+ ...+.+...++.|.+++..++
T Consensus       224 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          224 RVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-NGLIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             EEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-TSCEEEEETTSCEEEEEEETT
T ss_pred             EEEEecCCCccccceeEEeeecccccccceEEEEEcC-CCEEEEEeCCCEEEEEEcCCC
Confidence            9999865311                  1111 2332 235666667778888886544

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.3e-33  Score=249.99  Aligned_cols=273  Identities=10%  Similarity=0.061  Sum_probs=201.1

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||.++.+....+           .+|...|++++|+|++ ++|++|+.|++|++||+.+++......        ..
T Consensus       172 v~lwd~~~~~~~~~l-----------~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~--------~~  231 (611)
T 1nr0_A          172 VAIFEGPPFKFKSTF-----------GEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFE--------DD  231 (611)
T ss_dssp             EEEEETTTBEEEEEE-----------CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECB--------CT
T ss_pred             EEEEECCCCeEeeee-----------ccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEeeeec--------cc
Confidence            467887654432222           2489999999999998 899999999999999998876322110        00


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC---------------------------CCCcCCcccc
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP---------------------------SPLSLSPEDL  132 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~---------------------------~~~~~~~~~~  132 (312)
                      .....+|...|.+++|+|++++|+++ .|++|++||+.++...                           .+..+..|+.
T Consensus       232 ~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~  311 (611)
T 1nr0_A          232 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP  311 (611)
T ss_dssp             TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeC
Confidence            00112799999999999999999997 5999999999865310                           0112223333


Q ss_pred             cCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe-e------------------------
Q 021484          133 QKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-V------------------------  187 (312)
Q Consensus       133 ~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~------------------------  187 (312)
                      ........+.+|...  |.+++| +|++++|++++.|+.|++||+.+++....+ .                        
T Consensus       312 ~~~~~~~~~~gh~~~--v~~l~~-spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~  388 (611)
T 1nr0_A          312 ELGSIDQVRYGHNKA--ITALSS-SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDD  388 (611)
T ss_dssp             TTTEEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTT
T ss_pred             CCCCcceEEcCCCCC--EEEEEE-eCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCC
Confidence            333444566788866  999999 999999999999999999998776543221 0                        


Q ss_pred             ---------------------------------------------------------cCccceEEEEEcCCCCeEEEEeC
Q 021484          188 ---------------------------------------------------------GDRHVVNQLEPHPHIPMFATCGI  210 (312)
Q Consensus       188 ---------------------------------------------------------~~~~~v~~~~~~p~~~~l~t~~~  210 (312)
                                                                               .|...+.+++|+|++++|++++.
T Consensus       389 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~  468 (611)
T 1nr0_A          389 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ  468 (611)
T ss_dssp             EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred             ceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCC
Confidence                                                                     02234678999999999999999


Q ss_pred             CCcEEEccCCCCCCC--CCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc-cC-----------ccce-eEeecC
Q 021484          211 EKTVKLWAPMPTDFP--PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR-RQ-----------TLAY-RERRYN  275 (312)
Q Consensus       211 d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~-~~-----------~~~~-~~~~~~  275 (312)
                      |++|++||+.++...  ...+|...+ ....+++++.++++++.|+.+++|++.. ..           ..+. ..++|+
T Consensus       469 D~~v~lwd~~~~~~~~~~~~~h~~~v-~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspd  547 (611)
T 1nr0_A          469 DSKVHVYKLSGASVSEVKTIVHPAEI-TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD  547 (611)
T ss_dssp             TSEEEEEEEETTEEEEEEEEECSSCE-EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred             CCeEEEEEccCCceeeeeccCCCCce-EEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCC
Confidence            999999999875431  113455555 4456889999999999999999999875 11           1112 278899


Q ss_pred             CCccCCCCCCCeEEEeecCCCC
Q 021484          276 AADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       276 ~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      +..+++...++.|.+|++..+.
T Consensus       548 g~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          548 NVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             SSEEEEEETTSCEEEEETTCTT
T ss_pred             CCEEEEEECCCcEEEEECCCcc
Confidence            9999999899999999997655

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.6e-33  Score=236.51  Aligned_cols=228  Identities=16%  Similarity=0.269  Sum_probs=175.9

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      ...|++++|+|++ ++|++|+.|+.|++||+.++++              ... +.+|...|.+++|+|++.+|+++ .|
T Consensus       123 ~~~v~~v~~s~dg-~~l~s~~~d~~i~iwd~~~~~~--------------~~~-~~~h~~~v~~~~~~p~~~~l~s~s~d  186 (393)
T 1erj_A          123 DLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKI--------------VMI-LQGHEQDIYSLDYFPSGDKLVSGSGD  186 (393)
T ss_dssp             CCBEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE--------------EEE-ECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ceeEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcE--------------EEE-EccCCCCEEEEEEcCCCCEEEEecCC
Confidence            4459999999999 8999999999999999998762              222 37899999999999999988886 59


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEeccCCeeEEEe-
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLM-  186 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~-  186 (312)
                      +.|++||+.++                +....+. +...  +.+++| +| ++++|++|+.|+.|++||+++++.+..+ 
T Consensus       187 ~~v~iwd~~~~----------------~~~~~~~-~~~~--v~~~~~-~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~  246 (393)
T 1erj_A          187 RTVRIWDLRTG----------------QCSLTLS-IEDG--VTTVAV-SPGDGKYIAAGSLDRAVRVWDSETGFLVERLD  246 (393)
T ss_dssp             SEEEEEETTTT----------------EEEEEEE-CSSC--EEEEEE-CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             CcEEEEECCCC----------------eeEEEEE-cCCC--cEEEEE-ECCCCCEEEEEcCCCcEEEEECCCCcEEEeec
Confidence            99999999887                4555554 3333  899999 77 8999999999999999999999887776 


Q ss_pred             ------ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-------------CCCCCChhhhhhhhccCCCCcee
Q 021484          187 ------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-------------PPLPDNAEKIMKANKQGREDHSR  247 (312)
Q Consensus       187 ------~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l  247 (312)
                            .+|...|.+++|+|++++|++++.|++|++||++....             ..+.+|...+. ...+++++.++
T Consensus       247 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l  325 (393)
T 1erj_A          247 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL-SVATTQNDEYI  325 (393)
T ss_dssp             ------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEE-EEEECGGGCEE
T ss_pred             ccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEE-EEEECCCCCEE
Confidence                  57889999999999999999999999999999876432             12234444443 34467788899


Q ss_pred             EEecCCceEEEEEecccCcccee----------Eee------cCCCccCCCCCCCeEEEeecC
Q 021484          248 ITLTPDVIMHVLRLQRRQTLAYR----------ERR------YNAADFESDEEEGETYLLGFS  294 (312)
Q Consensus       248 ~s~~~d~~i~i~~~~~~~~~~~~----------~~~------~~~~~~~~~~~~~~v~~~~~~  294 (312)
                      ++++.|+.+++||+.........          .+.      |+...++++..++.+.+|++.
T Consensus       326 ~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          326 LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            99999999999998765432111          111      233445566666667777653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.8e-33  Score=230.27  Aligned_cols=236  Identities=14%  Similarity=0.188  Sum_probs=187.4

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||.++|++++|+|+++++|++|+.|++|++|++......         .. .+...+.+|...|.+++|+|++++|+++
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~---------~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~   83 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK---------FG-VPVRSFKGHSHIVQDCTLTADGAYALSA   83 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE---------EE-EEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc---------cc-ccceEEeCCcccEEEEEECCCCCEEEEE
Confidence            3699999999999977689999999999999998753210         00 1122237899999999999999999997


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                       .|++|++||+.++                +....+.+|...  |.+++| +|++++|++|+.|+.|++||++ ++++..
T Consensus        84 s~D~~v~~wd~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~~~l~s~s~D~~i~vwd~~-~~~~~~  143 (319)
T 3frx_A           84 SWDKTLRLWDVATG----------------ETYQRFVGHKSD--VMSVDI-DKKASMIISGSRDKTIKVWTIK-GQCLAT  143 (319)
T ss_dssp             ETTSEEEEEETTTT----------------EEEEEEECCSSC--EEEEEE-CTTSCEEEEEETTSCEEEEETT-SCEEEE
T ss_pred             eCCCEEEEEECCCC----------------CeeEEEccCCCc--EEEEEE-cCCCCEEEEEeCCCeEEEEECC-CCeEEE
Confidence             5999999999988                778889999976  999999 9999999999999999999997 567788


Q ss_pred             eecCccceEEEEEcCCC------CeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021484          186 MVGDRHVVNQLEPHPHI------PMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  258 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~------~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  258 (312)
                      +.+|...|.++.|+|..      ..+++++.|++|++||++.... ..+.+|...+. ...+++++.++++++.|+.+++
T Consensus       144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~-~~~~sp~g~~l~s~~~dg~i~i  222 (319)
T 3frx_A          144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN-TLTASPDGTLIASAGKDGEIML  222 (319)
T ss_dssp             ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEE-EEEECTTSSEEEEEETTCEEEE
T ss_pred             EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEE-EEEEcCCCCEEEEEeCCCeEEE
Confidence            88999999999999954      4799999999999999987753 44556766664 4457889999999999999999


Q ss_pred             EEecccCccc---------eeEeecCCCccCCCCCCCeEEEeecC
Q 021484          259 LRLQRRQTLA---------YRERRYNAADFESDEEEGETYLLGFS  294 (312)
Q Consensus       259 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~  294 (312)
                      ||+.......         -..+.|++..+....++ .+.+++++
T Consensus       223 wd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~  266 (319)
T 3frx_A          223 WNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLD  266 (319)
T ss_dssp             EETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred             EECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence            9987653221         12455665555544332 35555543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-32  Score=234.77  Aligned_cols=217  Identities=15%  Similarity=0.218  Sum_probs=174.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+           .+|...|++++|+|++ .+|++++.|++|++||++++++.              
T Consensus       147 i~iwd~~~~~~~~~~-----------~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~--------------  200 (393)
T 1erj_A          147 IRIWDIENRKIVMIL-----------QGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCS--------------  200 (393)
T ss_dssp             EEEEETTTTEEEEEE-----------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE--------------
T ss_pred             EEEEECCCCcEEEEE-----------ccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeE--------------
Confidence            578998876533332           2488899999999998 79999999999999999988732              


Q ss_pred             cccccCCCccEEEEEEcc-CCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceE-------ecccCCceee
Q 021484           81 RHLIGKNNIHITGLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-------SGHRNSQTVK  151 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~  151 (312)
                      ..  ..+...+.+++|+| ++++|+++ .|+.|++||+.++                ..+..+       .+|...  |.
T Consensus       201 ~~--~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~----------------~~~~~~~~~~~~~~~h~~~--v~  260 (393)
T 1erj_A          201 LT--LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG----------------FLVERLDSENESGTGHKDS--VY  260 (393)
T ss_dssp             EE--EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC----------------CEEEEEC------CCCSSC--EE
T ss_pred             EE--EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC----------------cEEEeecccccCCCCCCCC--EE
Confidence            11  12456799999999 88888887 5999999999876                344443       456655  99


Q ss_pred             EEEEecCCCCEEEEeccCceEEEEeccCC------------eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          152 GVNFFGPNDEYVMSGSDCGHLFIWKKKGG------------KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       152 ~v~~~s~~~~~l~~~~~dg~v~iwd~~~~------------~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                      +++| +|++++|++|+.|+.|++||+++.            .+...+.+|...|.+++|+|++.+|++++.|+.|++||+
T Consensus       261 ~v~~-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~  339 (393)
T 1erj_A          261 SVVF-TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK  339 (393)
T ss_dssp             EEEE-CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             EEEE-CCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            9999 999999999999999999998753            345677889999999999999999999999999999999


Q ss_pred             CCCCC-CCCCCChhhhhhhhcc-----CCCCceeEEecCCceEEEEEeccc
Q 021484          220 MPTDF-PPLPDNAEKIMKANKQ-----GREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       220 ~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      .++.. ..+.+|...+....+.     .+++.++++++.|+.+++|++...
T Consensus       340 ~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          340 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            88764 5566777776554432     246789999999999999998654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.6e-32  Score=224.92  Aligned_cols=252  Identities=10%  Similarity=0.073  Sum_probs=197.2

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+......+.....      .+|...|.+++|+|++ ++|++++.|+.|++||+.+++.             ..
T Consensus        74 i~iw~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~-------------~~  133 (337)
T 1gxr_A           74 VKVWDISHPGNKSPVSQLDC------LNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTP-------------RI  133 (337)
T ss_dssp             EEEEETTSTTCCSCSEEEEC------SCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC---------------EE
T ss_pred             EEEEECCCCCceeeeecccc------cCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCc-------------ce
Confidence            57899887653333222111      1378899999999998 8999999999999999987651             11


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ...+..|...|.+++|+|++++++++ .|+.|++||+.++                +....+..|...  +.+++| +|+
T Consensus       134 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~  194 (337)
T 1gxr_A          134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----------------TLVRQFQGHTDG--ASCIDI-SND  194 (337)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-CTT
T ss_pred             eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----------------ceeeeeecccCc--eEEEEE-CCC
Confidence            22236788899999999999988886 6999999999887                677788888866  999999 999


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhc
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANK  239 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  239 (312)
                      +++|++++.||.|++||+++++.+..+. +...+.+++|+|+++++++++.|+.|++||+.+.+...+..|...+. ...
T Consensus       195 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~-~~~  272 (337)
T 1gxr_A          195 GTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL-SLK  272 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEE-EEE
T ss_pred             CCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCcccee-EEE
Confidence            9999999999999999999999887775 67889999999999999999999999999999887666666666554 445


Q ss_pred             cCCCCceeEEecCCceEEEEEecccCccce---------eEeecCCCccCCCCCCCeEEEeec
Q 021484          240 QGREDHSRITLTPDVIMHVLRLQRRQTLAY---------RERRYNAADFESDEEEGETYLLGF  293 (312)
Q Consensus       240 ~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~  293 (312)
                      +++++.++++++.|+.+++|++........         ..+.+++..+.+...++.+.++++
T Consensus       273 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            788899999999999999999876543311         134445555555555555555553

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.9e-32  Score=226.99  Aligned_cols=239  Identities=14%  Similarity=0.168  Sum_probs=186.0

Q ss_pred             CCccceEEEEE-----cC-CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC
Q 021484           28 MNSIRLNAIVI-----DP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE  101 (312)
Q Consensus        28 ~h~~~v~~~~~-----~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  101 (312)
                      ||...|++++|     ++ ++ .+|++|+.|++|++||+.+.+....        ...+...+.+|...|.+++|+|++.
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~-~~l~sgs~D~~v~iWd~~~~~~~~~--------~~~~~~~l~~h~~~V~~~~~~~~~~   89 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDS-PVLISGSRDKTVMIWKLYEEEQNGY--------FGIPHKALTGHNHFVSDLALSQENC   89 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCC-CEEEEEETTSCEEEEEECSSCCSSB--------SEEEEEEECCCSSCEEEEEECSSTT
T ss_pred             cchhhhhheeeEEEeecCCCC-CEEEEEcCCCEEEEEECCcCCcccc--------cccccchhccCCCceEEEEECCCCC
Confidence            69999999999     77 66 8999999999999999976531100        0012223478999999999999999


Q ss_pred             eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC
Q 021484          102 LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG  180 (312)
Q Consensus       102 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~  180 (312)
                      +++++ .|+.|++||+.++                +....+.+|...  |.+++| +|++++|++++.|+.|++||+.. 
T Consensus        90 ~l~s~s~D~~v~lwd~~~~----------------~~~~~~~~h~~~--v~~v~~-sp~~~~l~s~~~d~~i~~wd~~~-  149 (343)
T 2xzm_R           90 FAISSSWDKTLRLWDLRTG----------------TTYKRFVGHQSE--VYSVAF-SPDNRQILSAGAEREIKLWNILG-  149 (343)
T ss_dssp             EEEEEETTSEEEEEETTSS----------------CEEEEEECCCSC--EEEEEE-CSSTTEEEEEETTSCEEEEESSS-
T ss_pred             EEEEEcCCCcEEEEECCCC----------------cEEEEEcCCCCc--EEEEEE-CCCCCEEEEEcCCCEEEEEeccC-
Confidence            99987 5999999999987                678889999876  999999 99999999999999999999984 


Q ss_pred             eeEEEee---cCccceEEEEEcCCC----------CeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCcee
Q 021484          181 KLVRLMV---GDRHVVNQLEPHPHI----------PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSR  247 (312)
Q Consensus       181 ~~~~~~~---~~~~~v~~~~~~p~~----------~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (312)
                      +......   .|...|.+++|+|++          .+|++++.|++|++||........+.+|...+. ...+++++.++
T Consensus       150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~-~~~~s~~g~~l  228 (343)
T 2xzm_R          150 ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVN-HLSISPNGKYI  228 (343)
T ss_dssp             CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEE-EEEECTTSSEE
T ss_pred             CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccce-EEEECCCCCEE
Confidence            3333443   688899999999987          689999999999999965544445556666654 44578899999


Q ss_pred             EEecCCceEEEEEecccCcc----------ceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          248 ITLTPDVIMHVLRLQRRQTL----------AYRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       248 ~s~~~d~~i~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      ++++.|+.+++||+......          ....+.|+...+... .++.+.+++...+.
T Consensus       229 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          229 ATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQS  287 (343)
T ss_dssp             EEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCC
T ss_pred             EEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCC
Confidence            99999999999998432211          112556666555544 34458888876543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.6e-32  Score=231.83  Aligned_cols=210  Identities=14%  Similarity=0.214  Sum_probs=172.7

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s  105 (312)
                      .+|...|.++.|+|+++..|++|+.|++|++||+.+++....         + ......+|...|.+++|++ ++.+|++
T Consensus       154 ~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~---------~-~~~~~~~h~~~v~~~~~~~~~~~~l~s  223 (380)
T 3iz6_a          154 TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI---------F-GSEFPSGHTADVLSLSINSLNANMFIS  223 (380)
T ss_dssp             CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE---------E-CCCSSSSCCSCEEEEEECSSSCCEEEE
T ss_pred             cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE---------e-ecccCCCCccCeEEEEeecCCCCEEEE
Confidence            579999999999998667899999999999999998863211         1 1112257889999999987 6788888


Q ss_pred             e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                      + .|+.|++||++...               +....+.+|...  |.+++| +|++++|++|+.||+|++||+++++.+.
T Consensus       224 gs~D~~v~~wd~~~~~---------------~~~~~~~~h~~~--v~~v~~-~p~~~~l~s~s~D~~i~lwd~~~~~~~~  285 (380)
T 3iz6_a          224 GSCDTTVRLWDLRITS---------------RAVRTYHGHEGD--INSVKF-FPDGQRFGTGSDDGTCRLFDMRTGHQLQ  285 (380)
T ss_dssp             EETTSCEEEEETTTTC---------------CCCEEECCCSSC--CCEEEE-CTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred             EECCCeEEEEECCCCC---------------cceEEECCcCCC--eEEEEE-ecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence            7 59999999997431               567788899876  999999 9999999999999999999999999988


Q ss_pred             EeecCc-------cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-C---CC-CCChhhhhhhhccCCCCceeEEecC
Q 021484          185 LMVGDR-------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-P---PL-PDNAEKIMKANKQGREDHSRITLTP  252 (312)
Q Consensus       185 ~~~~~~-------~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~---~~-~~~~~~~~~~~~~~~~~~~l~s~~~  252 (312)
                      .+..+.       ..|++++|+|++++|++|+.||.|++||+..++. .   .+ .+|...+ ....+++++.++++++.
T Consensus       286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v-~~l~~s~dg~~l~sgs~  364 (380)
T 3iz6_a          286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI-SCLGLSSDGSALCTGSW  364 (380)
T ss_dssp             EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCC-CEEEECSSSSEEEEECT
T ss_pred             EecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCce-EEEEECCCCCEEEEeeC
Confidence            876543       2489999999999999999999999999887653 1   22 3455555 55568899999999999


Q ss_pred             CceEEEEEecccC
Q 021484          253 DVIMHVLRLQRRQ  265 (312)
Q Consensus       253 d~~i~i~~~~~~~  265 (312)
                      |+.+++|++....
T Consensus       365 D~~i~iW~~~~~~  377 (380)
T 3iz6_a          365 DKNLKIWAFSGHR  377 (380)
T ss_dssp             TSCEEEEECCSSS
T ss_pred             CCCEEEEecCCCc
Confidence            9999999987653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.7e-33  Score=231.17  Aligned_cols=236  Identities=16%  Similarity=0.192  Sum_probs=183.4

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc--CCCeEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLI  104 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~  104 (312)
                      .+|..+|++++|+|++ ++|++|+.|++|++||+.+++.             .....+.+|...|.+++|+|  ++++|+
T Consensus        10 ~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~~-------------~~~~~l~gH~~~V~~v~~~~~~~~~~l~   75 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQ-------------ILIADLRGHEGPVWQVAWAHPMYGNILA   75 (316)
T ss_dssp             ----CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTEE-------------EEEEEEECCSSCEEEEEECCGGGSSCEE
T ss_pred             ccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCCc-------------EEEEEEcCCCccEEEEEeCCCCCCCEEE
Confidence            3699999999999998 8999999999999999987641             11122378999999999986  378888


Q ss_pred             Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC--CCEEEEeccCceEEEEeccCCe
Q 021484          105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~--~~~l~~~~~dg~v~iwd~~~~~  181 (312)
                      ++ .|++|++||++++.              ......+.+|...  |.+++| +|+  +.+|++|+.|+.|++||++.+.
T Consensus        76 s~s~D~~v~iWd~~~~~--------------~~~~~~~~~h~~~--V~~v~~-~p~~~g~~lasgs~D~~i~lwd~~~~~  138 (316)
T 3bg1_A           76 SCSYDRKVIIWREENGT--------------WEKSHEHAGHDSS--VNSVCW-APHDYGLILACGSSDGAISLLTYTGEG  138 (316)
T ss_dssp             EEETTSCEEEECCSSSC--------------CCEEEEECCCSSC--CCEEEE-CCTTTCSCEEEECSSSCEEEEEECSSS
T ss_pred             EEECCCEEEEEECCCCc--------------ceEEEEccCCCCc--eEEEEE-CCCCCCcEEEEEcCCCCEEEEecCCCC
Confidence            86 59999999998751              0234456678766  999999 887  7899999999999999998753


Q ss_pred             e---EEEeecCccceEEEEEcCC-----------------CCeEEEEeCCCcEEEccCCCC----CCCCCCCChhhhhhh
Q 021484          182 L---VRLMVGDRHVVNQLEPHPH-----------------IPMFATCGIEKTVKLWAPMPT----DFPPLPDNAEKIMKA  237 (312)
Q Consensus       182 ~---~~~~~~~~~~v~~~~~~p~-----------------~~~l~t~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~  237 (312)
                      .   ...+.+|...|.+++|+|+                 +++|++++.|++|++||++..    ....+.+|...+...
T Consensus       139 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v  218 (316)
T 3bg1_A          139 QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDV  218 (316)
T ss_dssp             CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEE
T ss_pred             CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEE
Confidence            2   3445678899999999997                 468999999999999999754    235667777776544


Q ss_pred             hccCCCC----ceeEEecCCceEEEEEecccC-------------ccce-eEeecCCCccCCCCCCCeEEEeecC
Q 021484          238 NKQGRED----HSRITLTPDVIMHVLRLQRRQ-------------TLAY-RERRYNAADFESDEEEGETYLLGFS  294 (312)
Q Consensus       238 ~~~~~~~----~~l~s~~~d~~i~i~~~~~~~-------------~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~  294 (312)
                       .+++++    .++++++.|+.+++|++....             ..++ ..+.|++..+++...++.|.+|+..
T Consensus       219 -~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          219 -AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             -ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             -EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence             466654    789999999999999986521             1112 2667888888888888889999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.9e-32  Score=235.38  Aligned_cols=219  Identities=11%  Similarity=0.123  Sum_probs=173.9

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+++.+....+           .+|...|++++|+|++ .+|++|+.|+.|++||+.+++              ..
T Consensus       121 i~iwd~~~~~~~~~~-----------~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~--------------~~  174 (420)
T 3vl1_A          121 IKVLDSNFNLQREID-----------QAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGS--------------NP  174 (420)
T ss_dssp             EEEECTTSCEEEEET-----------TSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--------------CC
T ss_pred             EEEEeCCCcceeeec-----------ccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCc--------------Cc
Confidence            578888765432221           2488999999999998 799999999999999999876              22


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc---CC---------
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR---NS---------  147 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------  147 (312)
                      ..+ .+|...|.+++|+|++++|+++ .|+.|++||+.++                +....+..+.   ..         
T Consensus       175 ~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~  237 (420)
T 3vl1_A          175 RTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG----------------TTIHTFNRKENPHDGVNSIALFVG  237 (420)
T ss_dssp             EEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT----------------EEEEEECBTTBTTCCEEEEEEEEC
T ss_pred             eEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC----------------ceeEEeecCCCCCCCccEEEEecC
Confidence            222 6899999999999999988886 5999999999877                4555554321   11         


Q ss_pred             ----------ceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee-cCccceEEEEEcCCCC-eEEEEeCCCcEE
Q 021484          148 ----------QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIP-MFATCGIEKTVK  215 (312)
Q Consensus       148 ----------~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~-~l~t~~~d~~i~  215 (312)
                                ..+.+++| +|++++|++++.||.|++||+++++.+..+. .|...|.+++|+|+++ +|++++.||.|+
T Consensus       238 ~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~  316 (420)
T 3vl1_A          238 TDRQLHEISTSKKNNLEF-GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLA  316 (420)
T ss_dssp             CCSSCGGGCCCCCCTTCS-SCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             CcceeeecccCcccceEE-cCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEE
Confidence                      22566666 8999999999999999999999988877764 5788999999999999 999999999999


Q ss_pred             EccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          216 LWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       216 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      +||++++.  +..+..+....+...++ +++.++++++.|+.+++|++...
T Consensus       317 vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          317 QWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             EEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred             EEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence            99998864  34444444444455433 46789999999999999998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.1e-32  Score=235.43  Aligned_cols=204  Identities=14%  Similarity=0.147  Sum_probs=164.8

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEe
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~  106 (312)
                      +|..+|++++|+|.++++||+|+.||.|+|||+.+++..             ......+|...|++++|+| ++.+|+++
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------~~~~~~gH~~~V~~l~f~p~~~~~l~s~  183 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------TFIKGIGAGGSITGLKFNPLNTNQFYAS  183 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------EEECCCSSSCCCCEEEECSSCTTEEEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------eEEEccCCCCCEEEEEEeCCCCCEEEEE
Confidence            477889999999977689999999999999999876521             1112268999999999998 57888887


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                       .|++|++||+++.                 ....+. .+.....+.+++| ++++++|++|+.||.|++||++ ++.+.
T Consensus       184 s~D~~v~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~dg~i~~wd~~-~~~~~  244 (435)
T 4e54_B          184 SMEGTTRLQDFKGN-----------------ILRVFASSDTINIWFCSLDV-SASSRMVVTGDNVGNVILLNMD-GKELW  244 (435)
T ss_dssp             CSSSCEEEEETTSC-----------------EEEEEECCSSCSCCCCCEEE-ETTTTEEEEECSSSBEEEEESS-SCBCC
T ss_pred             eCCCEEEEeeccCC-----------------ceeEEeccCCCCccEEEEEE-CCCCCEEEEEeCCCcEeeeccC-cceeE
Confidence             5999999999765                 333333 3333334789999 8999999999999999999997 56677


Q ss_pred             EeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCCC----CCCCCChhhhhhhhccCCCCceeEEecCCceEEEE
Q 021484          185 LMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL  259 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~  259 (312)
                      .+.+|...|++++|+|++. ++++++.|++|++||++....    ....+|...+ ....+++++.+|++++.|+.|++|
T Consensus       245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~spdg~~l~s~~~D~~i~iw  323 (435)
T 4e54_B          245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV-NAACFSPDGARLLTTDQKSEIRVY  323 (435)
T ss_dssp             CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCE-EECCBCTTSSEEEEEESSSCEEEE
T ss_pred             EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccc-cceeECCCCCeeEEEcCCCEEEEE
Confidence            8889999999999999987 588999999999999987652    2223455555 445578899999999999999999


Q ss_pred             Eeccc
Q 021484          260 RLQRR  264 (312)
Q Consensus       260 ~~~~~  264 (312)
                      ++...
T Consensus       324 d~~~~  328 (435)
T 4e54_B          324 SASQW  328 (435)
T ss_dssp             ESSSS
T ss_pred             ECCCC
Confidence            98764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.2e-32  Score=227.97  Aligned_cols=224  Identities=13%  Similarity=0.131  Sum_probs=171.4

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCC--CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   78 (312)
                      |+|||+++.....+...         .+|..+|++++|+|.  + ++|++|+.|++|++||+++++.             
T Consensus        37 v~lwd~~~~~~~~~~~l---------~gH~~~V~~v~~~~~~~~-~~l~s~s~D~~v~iWd~~~~~~-------------   93 (316)
T 3bg1_A           37 VKIFDVRNGGQILIADL---------RGHEGPVWQVAWAHPMYG-NILASCSYDRKVIIWREENGTW-------------   93 (316)
T ss_dssp             EEEEEEETTEEEEEEEE---------ECCSSCEEEEEECCGGGS-SCEEEEETTSCEEEECCSSSCC-------------
T ss_pred             EEEEEecCCCcEEEEEE---------cCCCccEEEEEeCCCCCC-CEEEEEECCCEEEEEECCCCcc-------------
Confidence            58999876543222222         248999999999863  5 7999999999999999987641             


Q ss_pred             cccccccCCCccEEEEEEccC--CCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE
Q 021484           79 CPRHLIGKNNIHITGLAYSNT--SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  155 (312)
Q Consensus        79 ~~~~~~~~~~~~i~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  155 (312)
                      .....+.+|...|.+++|+|+  +.+|+++ .|+.|++||+....             .......+.+|...  +.+++|
T Consensus        94 ~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-------------~~~~~~~~~~h~~~--v~~~~~  158 (316)
T 3bg1_A           94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-------------QWEVKKINNAHTIG--CNAVSW  158 (316)
T ss_dssp             CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-------------CEEECCBTTSSSSC--BCCCEE
T ss_pred             eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-------------CcceeeeeccccCC--cceEEE
Confidence            111123678999999999998  6788887 59999999997641             00113344567655  899999


Q ss_pred             ecCC-----------------CCEEEEeccCceEEEEeccCC---eeEEEeecCccceEEEEEcCCC----CeEEEEeCC
Q 021484          156 FGPN-----------------DEYVMSGSDCGHLFIWKKKGG---KLVRLMVGDRHVVNQLEPHPHI----PMFATCGIE  211 (312)
Q Consensus       156 ~s~~-----------------~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~p~~----~~l~t~~~d  211 (312)
                       +|+                 +++|++|+.|+.|++||++..   +++..+.+|...|.+++|+|++    .+|++++.|
T Consensus       159 -~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D  237 (316)
T 3bg1_A          159 -APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD  237 (316)
T ss_dssp             -CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred             -ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCC
Confidence             776                 478999999999999999755   4677788999999999999987    789999999


Q ss_pred             CcEEEccCCCCC-----CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          212 KTVKLWAPMPTD-----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       212 ~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ++|++|++....     ...+..|...+ ....+++++.++++++.|+.+++|+....
T Consensus       238 ~~v~iw~~~~~~~~~~~~~~~~~~~~~v-~~v~~sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          238 GRVFIWTCDDASSNTWSPKLLHKFNDVV-WHVSWSITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             CEEEEEECSSTTCCCCBCCEEEECSSCE-EEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred             CeEEEEEccCccccchhhhhhhcCCCcE-EEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence            999999987631     12233344444 44557889999999999999999997643

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.5e-32  Score=247.57  Aligned_cols=250  Identities=17%  Similarity=0.194  Sum_probs=190.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.....-.....      ..+|...|.+++|+|++ ++|++|+.|++|++||+.+++              +.
T Consensus       407 i~~W~~~~~~~~~~~~~~~------~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~~~--------------~~  465 (694)
T 3dm0_A          407 IILWKLTKDDKAYGVAQRR------LTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAAGV--------------ST  465 (694)
T ss_dssp             EEEEECCCSTTCSCEEEEE------EECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--------------EE
T ss_pred             EEEEEccCCCcccccccce------ecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCc--------------ce
Confidence            5789887643211111111      12589999999999998 899999999999999999886              22


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCc---eEecccCCceeeEEEEe
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ---VYSGHRNSQTVKGVNFF  156 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~v~~~  156 (312)
                      ..+ .+|...|.+++|+|++++|+++ .|++|++||+...                ....   ...+|...  |.+++| 
T Consensus       466 ~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~----------------~~~~~~~~~~~h~~~--v~~~~~-  525 (694)
T 3dm0_A          466 RRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE----------------CKYTISEGGEGHRDW--VSCVRF-  525 (694)
T ss_dssp             EEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC----------------EEEEECSSTTSCSSC--EEEEEE-
T ss_pred             eEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC----------------cceeeccCCCCCCCc--EEEEEE-
Confidence            222 7899999999999999988886 5999999998653                1111   11346654  999999 


Q ss_pred             cCCC--CEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhh
Q 021484          157 GPND--EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEK  233 (312)
Q Consensus       157 s~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~  233 (312)
                      +|++  ..|++++.|+.|++||++++++...+.+|.+.|++++|+|++++|++++.|++|++||+.+++. ..+. +.. 
T Consensus       526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~-  603 (694)
T 3dm0_A          526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANS-  603 (694)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSS-
T ss_pred             eCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCC-
Confidence            8876  5899999999999999999999999999999999999999999999999999999999988763 3332 222 


Q ss_pred             hhhhhccCCCCceeEEecCCceEEEEEecccCcc-----------------------------ceeEeecCCCccCCCCC
Q 021484          234 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL-----------------------------AYRERRYNAADFESDEE  284 (312)
Q Consensus       234 ~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~  284 (312)
                      .+....+++++.++++++ ++.+++||+......                             ....++|++..+.++..
T Consensus       604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~  682 (694)
T 3dm0_A          604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT  682 (694)
T ss_dssp             CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence            344555777776666554 566999998654221                             01256777888888888


Q ss_pred             CCeEEEeecC
Q 021484          285 EGETYLLGFS  294 (312)
Q Consensus       285 ~~~v~~~~~~  294 (312)
                      ++.|.+|++.
T Consensus       683 Dg~i~iW~i~  692 (694)
T 3dm0_A          683 DGVIRVWGIG  692 (694)
T ss_dssp             TSEEEEEEC-
T ss_pred             CCeEEEEecc
Confidence            8888888864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.8e-32  Score=225.31  Aligned_cols=255  Identities=12%  Similarity=0.129  Sum_probs=187.4

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||.+.|++++|+|+++++|++|+.|++|++||+.+.+...         . .+...+.+|...|.+++|+|++++|+++
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~---------~-~~~~~l~~h~~~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY---------G-IPQRALRGHSHFVSDVVISSDGQFALSG  104 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS---------E-EEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc---------c-eeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            36999999999999866899999999999999998764210         0 1222337899999999999999999986


Q ss_pred             -cCCcEEEEEcCCCcC--------------------------CCCCcCCcccccCCCC-CceEecccCCceeeEEEEecC
Q 021484          107 -NDELVYLFEKNMGLG--------------------------PSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~--------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~~~s~  158 (312)
                       .|+.|++|+......                          ..+..+..|+...... .....+|...  +..++| ++
T Consensus       105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~--v~~~~~-~~  181 (340)
T 4aow_A          105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW--VSCVRF-SP  181 (340)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSC--EEEEEE-CS
T ss_pred             cccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCc--ccceEE-cc
Confidence             599999999876540                          0111222333222211 1222345544  888888 65


Q ss_pred             C--CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhh
Q 021484          159 N--DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIM  235 (312)
Q Consensus       159 ~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~  235 (312)
                      +  ..++++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++.|++|++||+++... ..+. +...+ 
T Consensus       182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v-  259 (340)
T 4aow_A          182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD-GGDII-  259 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-CSSCE-
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec-CCceE-
Confidence            5  45788999999999999999999999999999999999999999999999999999999988764 2222 22223 


Q ss_pred             hhhccCCCCceeEEecCCceEEEEEecccCc------------------cc-eeEeecCCCccCCCCCCCeEEEeecCCC
Q 021484          236 KANKQGREDHSRITLTPDVIMHVLRLQRRQT------------------LA-YRERRYNAADFESDEEEGETYLLGFSDS  296 (312)
Q Consensus       236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~------------------~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~  296 (312)
                      ....++++ ..+++++.|+.+++|+++....                  .+ ...+.|++..+.+...++.|.+|+++.|
T Consensus       260 ~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          260 NALCFSPN-RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             EEEEECSS-SSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             EeeecCCC-CceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence            33445554 4566777899999999764311                  11 1256778888888888888999998766


Q ss_pred             C
Q 021484          297 D  297 (312)
Q Consensus       297 ~  297 (312)
                      .
T Consensus       339 t  339 (340)
T 4aow_A          339 T  339 (340)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1e-31  Score=230.84  Aligned_cols=229  Identities=16%  Similarity=0.118  Sum_probs=183.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCc
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL  110 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~  110 (312)
                      .+....|+|++ ++|++|+.||.|++||+.+++.               ...+..|...|.+++|+|++++|+++ .|+.
T Consensus        99 ~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~---------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~  162 (420)
T 3vl1_A           99 YTAVDTAKLQM-RRFILGTTEGDIKVLDSNFNLQ---------------REIDQAHVSEITKLKFFPSGEALISSSQDMQ  162 (420)
T ss_dssp             EEEEEEECSSS-CEEEEEETTSCEEEECTTSCEE---------------EEETTSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceEEEEEecCC-CEEEEEECCCCEEEEeCCCcce---------------eeecccccCccEEEEECCCCCEEEEEeCCCe
Confidence            34555788888 8999999999999999997762               22336899999999999999988887 5999


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC-
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-  189 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-  189 (312)
                      |++||+.++                +....+.+|...  |.+++| +|++++|++++.||.|++||+++++.+..+..| 
T Consensus       163 i~iwd~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  223 (420)
T 3vl1_A          163 LKIWSVKDG----------------SNPRTLIGHRAT--VTDIAI-IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE  223 (420)
T ss_dssp             EEEEETTTC----------------CCCEEEECCSSC--EEEEEE-ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT
T ss_pred             EEEEeCCCC----------------cCceEEcCCCCc--EEEEEE-cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC
Confidence            999999987                788889999876  999999 899999999999999999999999999888753 


Q ss_pred             --c---------------------cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCC-CChhhhhhhhccCCCC
Q 021484          190 --R---------------------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP-DNAEKIMKANKQGRED  244 (312)
Q Consensus       190 --~---------------------~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~  244 (312)
                        .                     ..+.+++|+|++++|++++.||.|++||++++.. ..+. .|...+ ....+++++
T Consensus       224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-~~~~~~~~~  302 (420)
T 3vl1_A          224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSC-NSLTVDGNN  302 (420)
T ss_dssp             BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCE-EEEEECSSC
T ss_pred             CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCc-eeEEEeCCC
Confidence              2                     3445556689999999999999999999988763 3332 244444 445577777


Q ss_pred             c-eeEEecCCceEEEEEecccCccce-----------eEeecCCCccCCCCCCCeEEEeecCCC
Q 021484          245 H-SRITLTPDVIMHVLRLQRRQTLAY-----------RERRYNAADFESDEEEGETYLLGFSDS  296 (312)
Q Consensus       245 ~-~l~s~~~d~~i~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~  296 (312)
                      . ++++++.|+.+++||++.......           ....++...+.+...++.+.+|++.+.
T Consensus       303 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          303 ANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             TTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred             CCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence            6 999999999999999876533211           123345566777788889999998764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.8e-32  Score=228.32  Aligned_cols=250  Identities=13%  Similarity=0.125  Sum_probs=191.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCC---cEEEEEeCCCeEEEEEccCCeecCCCCCCCCccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP---NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT   77 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   77 (312)
                      |++||+.+.+....+......      .|...|++++|+|++.   .+|++|+.||.|++||+.+++.            
T Consensus        46 v~vw~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------------  107 (366)
T 3k26_A           46 VTLYECHSQGEIRLLQSYVDA------DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC------------  107 (366)
T ss_dssp             EEEEEECGGGCEEEEEEEECS------CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE------------
T ss_pred             EEEEEcCCCcEEEeeeecccc------CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE------------
Confidence            579999877655555443222      2678899999999831   6999999999999999998762            


Q ss_pred             ccccccccCCCccEEEEEEcc-CCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceE---ecccCCceeeE
Q 021484           78 FCPRHLIGKNNIHITGLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY---SGHRNSQTVKG  152 (312)
Q Consensus        78 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~  152 (312)
                        ... +.+|...|.+++|+| ++.+|+++ .|+.|++||+.++                +....+   .+|...  |.+
T Consensus       108 --~~~-~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~~--v~~  166 (366)
T 3k26_A          108 --IKH-YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD----------------TLVAIFGGVEGHRDE--VLS  166 (366)
T ss_dssp             --EEE-EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT----------------EEEEEECSTTSCSSC--EEE
T ss_pred             --eee-ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC----------------eEEEEecccccccCc--eeE
Confidence              222 267899999999999 88888886 5999999999887                566666   567755  999


Q ss_pred             EEEecCCCCEEEEeccCceEEEEeccCCeeEEEee----------------------------cCccceEEEEEcCCCCe
Q 021484          153 VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV----------------------------GDRHVVNQLEPHPHIPM  204 (312)
Q Consensus       153 v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~----------------------------~~~~~v~~~~~~p~~~~  204 (312)
                      ++| +|++++|++++.||.|++||+++++.+..+.                            .|...|.+++|+  +++
T Consensus       167 ~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  243 (366)
T 3k26_A          167 ADY-DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL  243 (366)
T ss_dssp             EEE-CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred             EEE-CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence            999 9999999999999999999998765543333                            388999999998  779


Q ss_pred             EEEEeCCCcEEEccCCCCCC---------------CCCCCChhhhhhhhccCCC--CceeEEecCCceEEEEEecccCcc
Q 021484          205 FATCGIEKTVKLWAPMPTDF---------------PPLPDNAEKIMKANKQGRE--DHSRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       205 l~t~~~d~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      +++++.|+.|++||+.+...               ..+..|...+ ....++++  +.++++++.|+.+++|++......
T Consensus       244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~  322 (366)
T 3k26_A          244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI-WYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH  322 (366)
T ss_dssp             EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS-SCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred             EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE-EEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence            99999999999999877542               1112233333 34446667  899999999999999998764321


Q ss_pred             ----------------ceeEeecCCCccCCCCCCCeEEEeec
Q 021484          268 ----------------AYRERRYNAADFESDEEEGETYLLGF  293 (312)
Q Consensus       268 ----------------~~~~~~~~~~~~~~~~~~~~v~~~~~  293 (312)
                                      ....+.+++..+.+...++.|++||+
T Consensus       323 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          323 KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence                            11255666677777777777777775

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.7e-31  Score=224.35  Aligned_cols=252  Identities=13%  Similarity=0.199  Sum_probs=198.1

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+...          |...|++++|+|++ .+|++|+.||.|++||+.+++.              .
T Consensus       115 v~lw~~~~~~~~~~~~~~----------~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~--------------~  169 (401)
T 4aez_A          115 VYVWNADSGSVSALAETD----------ESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTK--------------L  169 (401)
T ss_dssp             EEEEETTTCCEEEEEECC----------TTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE--------------E
T ss_pred             EEEeeCCCCcEeEeeecC----------CCCCEEEEEECCCC-CEEEEECCCCeEEEEECcCCeE--------------E
Confidence            578999887655444432          67889999999998 8999999999999999988762              2


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+ ..|...|.+++|+  +.+|+++ .|+.|++||++...               .....+.+|...  |.+++| +|+
T Consensus       170 ~~~-~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~~--v~~~~~-~~~  228 (401)
T 4aez_A          170 RTM-AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIAN---------------HQIGTLQGHSSE--VCGLAW-RSD  228 (401)
T ss_dssp             EEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS---------------CEEEEEECCSSC--EEEEEE-CTT
T ss_pred             EEe-cCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCc---------------ceeeEEcCCCCC--eeEEEE-cCC
Confidence            222 6889999999994  5678776 69999999998531               566778888866  999999 899


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEe--CCCcEEEccCCCCCCCCCCCChhhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCG--IEKTVKLWAPMPTDFPPLPDNAEKIMK  236 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~  236 (312)
                      +++|++++.||.|++||+++++++..+..|...|.+++|+|++.. +++++  .|+.|++||+.++.......+...+ .
T Consensus       229 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v-~  307 (401)
T 4aez_A          229 GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQV-T  307 (401)
T ss_dssp             SSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCE-E
T ss_pred             CCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcE-E
Confidence            999999999999999999999999999999999999999998765 56654  7999999999987642222233333 4


Q ss_pred             hhccCCCCceeEE--ecCCceEEEEEecccCcc------------ceeEeecCCCccCCCCCCCeEEEeecCCCCCC
Q 021484          237 ANKQGREDHSRIT--LTPDVIMHVLRLQRRQTL------------AYRERRYNAADFESDEEEGETYLLGFSDSDAS  299 (312)
Q Consensus       237 ~~~~~~~~~~l~s--~~~d~~i~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  299 (312)
                      ...+++++..+++  +..|+.+++|++......            ....+.+++..+.+...++.+.+|++.++...
T Consensus       308 ~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             EEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence            5557888888888  558999999998763211            11266778888888888899999999877643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.9e-31  Score=223.16  Aligned_cols=234  Identities=14%  Similarity=0.115  Sum_probs=183.3

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccc-ccCCCccEEEEEEcc-CCCeEEE
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSN-TSELLIS  105 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~s  105 (312)
                      +|...|++++|+|+++++|++|+.||.|++||+.+++.              ...+ ..+|...|.+++|+| ++.+|++
T Consensus        71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s  136 (383)
T 3ei3_B           71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK--------------TSFIQGMGPGDAITGMKFNQFNTNQLFV  136 (383)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC--------------EEEECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred             CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc--------------ceeeecCCcCCceeEEEeCCCCCCEEEE
Confidence            58999999999999867999999999999999997752              1111 146899999999999 6678888


Q ss_pred             e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc-CCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484          106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                      + .|+.|++||+.+.                 ....+..+. ....|.+++| +|++++|++++.|+.|++||+ +++++
T Consensus       137 ~~~d~~i~iwd~~~~-----------------~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~i~d~-~~~~~  197 (383)
T 3ei3_B          137 SSIRGATTLRDFSGS-----------------VIQVFAKTDSWDYWYCCVDV-SVSRQMLATGDSTGRLLLLGL-DGHEI  197 (383)
T ss_dssp             EETTTEEEEEETTSC-----------------EEEEEECCCCSSCCEEEEEE-ETTTTEEEEEETTSEEEEEET-TSCEE
T ss_pred             EeCCCEEEEEECCCC-----------------ceEEEeccCCCCCCeEEEEE-CCCCCEEEEECCCCCEEEEEC-CCCEE
Confidence            6 5999999999863                 444554443 1133999999 899999999999999999999 57888


Q ss_pred             EEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCC----CCCCCCChhhhhhhhccCC-CCceeEEecCCceEE
Q 021484          184 RLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMH  257 (312)
Q Consensus       184 ~~~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~  257 (312)
                      ..+.+|...|.+++|+|+++ ++++++.|++|++||+++..    .....+|...+ ....+++ ++.++++++.|+.++
T Consensus       198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~~l~~~~~d~~i~  276 (383)
T 3ei3_B          198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPV-NAAYFNPTDSTKLLTTDQRNEIR  276 (383)
T ss_dssp             EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCE-EEEEECTTTSCEEEEEESSSEEE
T ss_pred             EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCce-EEEEEcCCCCCEEEEEcCCCcEE
Confidence            89999999999999999999 89999999999999998732    22222455555 4445777 899999999999999


Q ss_pred             EEEecccCcccee---------------------------EeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          258 VLRLQRRQTLAYR---------------------------ERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       258 i~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      +||++........                           .+.+++..  +...++.|+++|...+.
T Consensus       277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~  341 (383)
T 3ei3_B          277 VYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG  341 (383)
T ss_dssp             EEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred             EEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence            9998765432221                           22333333  45577889999987664

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-31  Score=238.47  Aligned_cols=194  Identities=20%  Similarity=0.362  Sum_probs=169.8

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      +|...|++++|+|++ ++|++++.|+.|++||.. ++              .... +.+|...|++++|+|++++|+++ 
T Consensus       383 ~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~--------------~~~~-~~~~~~~v~~~~~s~d~~~l~~~~  445 (577)
T 2ymu_A          383 GHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQ--------------LLQT-LTGHSSSVWGVAFSPDDQTIASAS  445 (577)
T ss_dssp             CCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CC--------------EEEE-EECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CC--------------EEEE-ecCCCCCeEEEEECCCCCEEEEEc
Confidence            378899999999999 899999999999999964 33              1122 26789999999999999999986 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .|+.|++||...                 +.+..+.+|...  |.+++| +|++++|++++.|+.|++||. +++++..+
T Consensus       446 ~d~~v~~w~~~~-----------------~~~~~~~~~~~~--v~~~~~-spd~~~las~~~d~~i~iw~~-~~~~~~~~  504 (577)
T 2ymu_A          446 DDKTVKLWNRNG-----------------QLLQTLTGHSSS--VRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTL  504 (577)
T ss_dssp             TTSEEEEEETTS-----------------CEEEEEECCSSC--EEEEEE-CTTSCEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred             CCCEEEEEECCC-----------------CEEEEEcCCCCC--EEEEEE-cCCCCEEEEEeCCCEEEEEcC-CCCEEEEE
Confidence            599999999754                 477788888866  999999 999999999999999999995 68889999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      .+|...|++++|+|++++|++++.|+.|++||.....+..+.+|...+... .+++++++|++++.|+.|++||
T Consensus       505 ~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~-~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV-AFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEE-EECTTSSCEEEEETTSCEEEEC
T ss_pred             eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEE-EEcCCCCEEEEEeCCCEEEEeC
Confidence            999999999999999999999999999999998766667777888777544 4788999999999999999996

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.6e-31  Score=229.62  Aligned_cols=252  Identities=14%  Similarity=0.098  Sum_probs=179.0

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+|||+.+.+....+..         .+|...|++++|+|.++++|++|+.||+|++||+++..+.             .
T Consensus       144 i~lWd~~~~~~~~~~~~---------~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-------------~  201 (435)
T 4e54_B          144 IMLWNFGIKDKPTFIKG---------IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR-------------V  201 (435)
T ss_dssp             EEEECSSCCSCCEEECC---------CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE-------------E
T ss_pred             EEEEECCCCCceeEEEc---------cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee-------------E
Confidence            57899887654333322         2589999999999965589999999999999999866421             0


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ......+...+.+++|+|++++|+++ .|+.|++||++.                 +.+..+.+|...  |.+++| +|+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-----------------~~~~~~~~h~~~--v~~v~~-~p~  261 (435)
T 4e54_B          202 FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-----------------KELWNLRMHKKK--VTHVAL-NPC  261 (435)
T ss_dssp             EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-----------------CBCCCSBCCSSC--EEEEEE-CTT
T ss_pred             EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-----------------ceeEEEecccce--EEeeee-cCC
Confidence            11112344567899999999999997 599999999975                 356677888866  999999 888


Q ss_pred             CC-EEEEeccCceEEEEeccCCeeEEE---eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChh--
Q 021484          160 DE-YVMSGSDCGHLFIWKKKGGKLVRL---MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAE--  232 (312)
Q Consensus       160 ~~-~l~~~~~dg~v~iwd~~~~~~~~~---~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~--  232 (312)
                      +. +|++|+.|+.|++||+++.+....   ..+|...|++++|+|++.+|++++.|++|+|||+.++.. ..+..|..  
T Consensus       262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~  341 (435)
T 4e54_B          262 CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH  341 (435)
T ss_dssp             CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred             CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence            76 688999999999999987664433   357899999999999999999999999999999987642 11111111  


Q ss_pred             ----hhhhhhccCCCCceeEEe------------cCCceEEEEEecccCccce------------eEeecCCCccCCCCC
Q 021484          233 ----KIMKANKQGREDHSRITL------------TPDVIMHVLRLQRRQTLAY------------RERRYNAADFESDEE  284 (312)
Q Consensus       233 ----~~~~~~~~~~~~~~l~s~------------~~d~~i~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~  284 (312)
                          ..+.. .+.++...++.+            ..++.|++|+..++.....            ..+.|++..++++. 
T Consensus       342 ~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-  419 (435)
T 4e54_B          342 FQHLTPIKA-AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-  419 (435)
T ss_dssp             CSSSCCCBC-EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-
T ss_pred             cccceeEEE-EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-
Confidence                11111 233333333332            2346799999765432211            14677777777665 


Q ss_pred             CCeEEEeecCCC
Q 021484          285 EGETYLLGFSDS  296 (312)
Q Consensus       285 ~~~v~~~~~~~~  296 (312)
                      ++.|.+|+..++
T Consensus       420 d~~i~iW~~~~g  431 (435)
T 4e54_B          420 GYHILIWSQQEA  431 (435)
T ss_dssp             SSEEEECCCC--
T ss_pred             CCcEEEEECCcC
Confidence            557999988765

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.9e-31  Score=236.31  Aligned_cols=196  Identities=20%  Similarity=0.344  Sum_probs=169.6

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      +|..+|.+++|+|++ +.|++++.|+.|++|+.. ++              .... +..|...|.+++|+|++++|+++ 
T Consensus       342 ~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~-~~--------------~~~~-~~~~~~~v~~~~~s~dg~~l~~~~  404 (577)
T 2ymu_A          342 GHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRN-GQ--------------LLQT-LTGHSSSVRGVAFSPDGQTIASAS  404 (577)
T ss_dssp             CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETT-CC--------------EEEE-EECCSSCEEEEEECTTSSCEEEEE
T ss_pred             CCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCC-CC--------------EEEE-ecCCCCCeEEEEECCCCCEEEEEe
Confidence            478899999999999 899999999999999964 33              1122 26789999999999999998886 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .|+.|++||...                 +.+..+.+|...  |.+++| +|++++|++++.|+.|++||. +++.+..+
T Consensus       405 ~d~~v~~~~~~~-----------------~~~~~~~~~~~~--v~~~~~-s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~  463 (577)
T 2ymu_A          405 DDKTVKLWNRNG-----------------QLLQTLTGHSSS--VWGVAF-SPDDQTIASASDDKTVKLWNR-NGQLLQTL  463 (577)
T ss_dssp             TTSEEEEECTTC-----------------CEEEEEECCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred             CCCEEEEEeCCC-----------------CEEEEecCCCCC--eEEEEE-CCCCCEEEEEcCCCEEEEEEC-CCCEEEEE
Confidence            599999999643                 567788888866  999999 999999999999999999996 57788899


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      .+|...|.+++|+|++++|++++.|++|++||.....+..+.+|...+.. ..+++++.+|++++.|+.|++||..
T Consensus       464 ~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~-l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          464 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG-VAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEE-EEECTTSSCEEEEETTSEEEEECTT
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEE-EEEcCCCCEEEEEECcCEEEEEeCC
Confidence            99999999999999999999999999999999766656677777777644 4578899999999999999999953

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-30  Score=224.22  Aligned_cols=267  Identities=11%  Similarity=0.133  Sum_probs=200.0

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+....+.+..         .+|...|++++|+|++ .+|++|+.||.|++|++.+....     .      ..
T Consensus        47 v~iw~~~~~~~~~~~~~---------~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~vw~~~~~~~~-----~------~~  105 (416)
T 2pm9_A           47 LELWSLLAADSEKPIAS---------LQVDSKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANNA-----I------NS  105 (416)
T ss_dssp             CEEEESSSGGGCSCSCC---------CCCSSCEEEEEECSSS-SCEEEEESSSCEEEECCSSTTSC-----C------CE
T ss_pred             EEEEEccCCCCCcEEEE---------EecCCceEEEEECCCC-CeEEEEccCCeEEEeeccccccc-----c------cc
Confidence            57888876543212111         1378899999999998 79999999999999999872100     0      12


Q ss_pred             cccccCCCccEEEEEEccC-CCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           81 RHLIGKNNIHITGLAYSNT-SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                      ...+..|...|.+++|+|+ +.+|+++ .|+.|++||+.+.......      . .......+..|...  |.+++| +|
T Consensus       106 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~------~-~~~~~~~~~~~~~~--v~~~~~-~~  175 (416)
T 2pm9_A          106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN------Y-TPLTPGQSMSSVDE--VISLAW-NQ  175 (416)
T ss_dssp             EEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT------C-CCBCCCCSCCSSCC--CCEEEE-CS
T ss_pred             hhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc------c-cccccccccCCCCC--eeEEEe-CC
Confidence            2223779999999999998 7888887 5999999999876200000      0 00011223456655  999999 88


Q ss_pred             C-CCEEEEeccCceEEEEeccCCeeEEEeecC------ccceEEEEEcCCC-CeEEEEeCCC---cEEEccCCCC-C-CC
Q 021484          159 N-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGD------RHVVNQLEPHPHI-PMFATCGIEK---TVKLWAPMPT-D-FP  225 (312)
Q Consensus       159 ~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~p~~-~~l~t~~~d~---~i~iwd~~~~-~-~~  225 (312)
                      + +.+|++++.||.|++||+++++.+..+..|      ...|.+++|+|++ .++++++.|+   .|++||+++. . ..
T Consensus       176 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~  255 (416)
T 2pm9_A          176 SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ  255 (416)
T ss_dssp             SCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB
T ss_pred             CCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE
Confidence            8 789999999999999999999999888876      7889999999997 5799999998   9999999985 3 45


Q ss_pred             CCC-CChhhhhhhhccCC-CCceeEEecCCceEEEEEecccCccc----------eeEeecCC-CccCCCCCCCeEEEee
Q 021484          226 PLP-DNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTLA----------YRERRYNA-ADFESDEEEGETYLLG  292 (312)
Q Consensus       226 ~~~-~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~v~~~~  292 (312)
                      .+. +|...+.... +++ ++.++++++.|+.+++|++.......          ...+.|+. ..+.+...++.|.+++
T Consensus       256 ~~~~~~~~~v~~~~-~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~  334 (416)
T 2pm9_A          256 TLNQGHQKGILSLD-WCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQT  334 (416)
T ss_dssp             CCCSCCSSCEEEEE-ECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEE
T ss_pred             EeecCccCceeEEE-eCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEE
Confidence            555 6766665444 666 89999999999999999987643221          12566766 6778888889999999


Q ss_pred             cCCCCCC
Q 021484          293 FSDSDAS  299 (312)
Q Consensus       293 ~~~~~~~  299 (312)
                      +......
T Consensus       335 ~~~~~~~  341 (416)
T 2pm9_A          335 LQNLTNT  341 (416)
T ss_dssp             SCCCCCS
T ss_pred             ccCCCCC
Confidence            9776543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.6e-31  Score=222.80  Aligned_cols=199  Identities=9%  Similarity=0.060  Sum_probs=160.9

Q ss_pred             CccceEEEEEcCCCCcEEE--EEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           29 NSIRLNAIVIDPRNPNYFA--VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      +...+.+++|+|+| ++++  +++.|++|++||+.++++              ...+  .|...|.+++|+|+|++++++
T Consensus       132 ~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~~--------------~~~~--~~~~~V~~v~fspdg~~l~s~  194 (365)
T 4h5i_A          132 ADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLTE--------------KFEI--ETRGEVKDLHFSTDGKVVAYI  194 (365)
T ss_dssp             TTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTEE--------------EEEE--ECSSCCCEEEECTTSSEEEEE
T ss_pred             cccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCcE--------------EEEe--CCCCceEEEEEccCCceEEec
Confidence            45668999999999 6655  455799999999998873              2222  366789999999999999999


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCc--eEecccCCceeeEEEEecCCCCEEEEeccCc----eEEEEeccCC
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ--VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG----HLFIWKKKGG  180 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg----~v~iwd~~~~  180 (312)
                      +++.+.+|+..++                +...  ...+|.  ..|.+++| +|+++++++++.|+    .+++|++...
T Consensus       195 s~~~~~~~~~~~~----------------~~~~~~~~~~~~--~~v~~v~f-spdg~~l~~~s~d~~~~~~i~~~~~~~~  255 (365)
T 4h5i_A          195 TGSSLEVISTVTG----------------SCIARKTDFDKN--WSLSKINF-IADDTVLIAASLKKGKGIVLTKISIKSG  255 (365)
T ss_dssp             CSSCEEEEETTTC----------------CEEEEECCCCTT--EEEEEEEE-EETTEEEEEEEESSSCCEEEEEEEEETT
T ss_pred             cceeEEEEEeccC----------------cceeeeecCCCC--CCEEEEEE-cCCCCEEEEEecCCcceeEEeecccccc
Confidence            8888888888765                3332  223455  34999999 89999999999887    6888998766


Q ss_pred             ee----EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CC-CCCChhhhhhhhccCCCCceeEEecCCc
Q 021484          181 KL----VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PP-LPDNAEKIMKANKQGREDHSRITLTPDV  254 (312)
Q Consensus       181 ~~----~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~  254 (312)
                      ..    ...+.+|...|++++|+|+|++||+|+.|++|+|||+++++. .. +.+|...+ ....+++++.+|++++.|+
T Consensus       256 ~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V-~~v~fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          256 NTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI-TEVTISPDSTYVASVSAAN  334 (365)
T ss_dssp             EEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCE-EEEEECTTSCEEEEEETTS
T ss_pred             eecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCE-EEEEECCCCCEEEEEeCCC
Confidence            53    345678999999999999999999999999999999998874 44 45677776 4455899999999999999


Q ss_pred             eEEEEEeccc
Q 021484          255 IMHVLRLQRR  264 (312)
Q Consensus       255 ~i~i~~~~~~  264 (312)
                      +|+||++...
T Consensus       335 tvrvw~ip~~  344 (365)
T 4h5i_A          335 TIHIIKLPLN  344 (365)
T ss_dssp             EEEEEECCTT
T ss_pred             eEEEEEcCCC
Confidence            9999998644

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-31  Score=223.09  Aligned_cols=234  Identities=14%  Similarity=0.151  Sum_probs=189.5

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC--CCeEEE
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLIS  105 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s  105 (312)
                      +|..+|++++|+|++ .+|++|+.||.|++||+.....             .....+.+|...|++++|+++  +.+|++
T Consensus         9 ~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s   74 (379)
T 3jrp_A            9 AHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETH-------------KLIDTLTGHEGPVWRVDWAHPKFGTILAS   74 (379)
T ss_dssp             ECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEE-------------EEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             CCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCCcc-------------eeeeEecCCCCcEEEEEeCCCCCCCEEEE
Confidence            589999999999998 8999999999999999984331             122223789999999999987  888888


Q ss_pred             e-cCCcEEEEEcCCCcCCCCCcCCcccccCCC--CCceEecccCCceeeEEEEecCC--CCEEEEeccCceEEEEeccCC
Q 021484          106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKRE--EPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGG  180 (312)
Q Consensus       106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~v~~~s~~--~~~l~~~~~dg~v~iwd~~~~  180 (312)
                      + .|+.|++||+.++                +  ....+..|...  |.+++| +|+  +++|++++.|+.|++||++++
T Consensus        75 ~~~dg~v~iwd~~~~----------------~~~~~~~~~~~~~~--v~~~~~-~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           75 CSYDGKVLIWKEENG----------------RWSQIAVHAVHSAS--VNSVQW-APHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             EETTSCEEEEEEETT----------------EEEEEEEECCCSSC--EEEEEE-CCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             eccCCEEEEEEcCCC----------------ceeEeeeecCCCcc--eEEEEe-CCCCCCCEEEEecCCCcEEEEecCCC
Confidence            6 5999999999876                4  55666677765  999999 898  999999999999999999877


Q ss_pred             e--eEEEeecCccceEEEEEcC-------------CCCeEEEEeCCCcEEEccCCCCCC-----CCCCCChhhhhhhhcc
Q 021484          181 K--LVRLMVGDRHVVNQLEPHP-------------HIPMFATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQ  240 (312)
Q Consensus       181 ~--~~~~~~~~~~~v~~~~~~p-------------~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~  240 (312)
                      .  ....+..|...|.+++|+|             ++.++++++.|+.|++||+++...     ..+.+|...+. ...+
T Consensus       136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~-~~~~  214 (379)
T 3jrp_A          136 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR-DVAW  214 (379)
T ss_dssp             SCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE-EEEE
T ss_pred             CceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEe-EEEE
Confidence            3  4456678999999999999             689999999999999999986542     34455666554 4457


Q ss_pred             CCC---CceeEEecCCceEEEEEecccC--------------ccc-eeEeecCCCccCCCCCCCeEEEeecCC
Q 021484          241 GRE---DHSRITLTPDVIMHVLRLQRRQ--------------TLA-YRERRYNAADFESDEEEGETYLLGFSD  295 (312)
Q Consensus       241 ~~~---~~~l~s~~~d~~i~i~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~  295 (312)
                      +++   +.++++++.|+.+++|++....              ..+ ...+.+++..+.+...++.++++++..
T Consensus       215 sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          215 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            777   8999999999999999987642              111 126778888888877888899999863

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.7e-31  Score=221.59  Aligned_cols=255  Identities=9%  Similarity=0.095  Sum_probs=193.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCC--CcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN--PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   78 (312)
                      |++||+.+.+........          |..+|++++|+|++  +.+|++|+.||.|++||+.+++              
T Consensus        46 v~iw~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------  101 (357)
T 3i2n_A           46 IQLYEIQHGDLKLLREIE----------KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE--------------  101 (357)
T ss_dssp             EEEEEECSSSEEEEEEEE----------ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS--------------
T ss_pred             EEEEeCCCCcccceeeec----------ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC--------------
Confidence            578999877654444332          67899999999983  3799999999999999999775              


Q ss_pred             cccccccCCCccEEEEEE------ccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC--Cce
Q 021484           79 CPRHLIGKNNIHITGLAY------SNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN--SQT  149 (312)
Q Consensus        79 ~~~~~~~~~~~~i~~~~~------~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  149 (312)
                      .....+.+|...|.+++|      +|++++|+++ .|+.|++||+.++.               .....+..+..  ...
T Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~---------------~~~~~~~~~~~~~~~~  166 (357)
T 3i2n_A          102 MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD---------------DPVANMEPVQGENKRD  166 (357)
T ss_dssp             SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS---------------SCSEEECCCTTSCCCC
T ss_pred             ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC---------------CcceeccccCCCCCCc
Confidence            122223689999999955      6788888886 59999999998861               25566655443  124


Q ss_pred             eeEEEE---ecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcC---CCCeEEEEeCCCcEEEccCCCCC
Q 021484          150 VKGVNF---FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP---HIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       150 v~~v~~---~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      +.+++|   +++++++|++++.||.|++||+++++.... ..|...|.+++|+|   ++.++++++.||.|++||+++..
T Consensus       167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred             eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence            888883   279999999999999999999999887544 56888999999999   89999999999999999998765


Q ss_pred             C-CCCC-----CChhhhhhhhccCCCCc-eeEEecCCceEEEEEecccCcc-----------------------------
Q 021484          224 F-PPLP-----DNAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQTL-----------------------------  267 (312)
Q Consensus       224 ~-~~~~-----~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~i~~~~~~~~~-----------------------------  267 (312)
                      . ..+.     +|...+.. ..+++++. ++++++.|+.+++|+++.....                             
T Consensus       246 ~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v  324 (357)
T 3i2n_A          246 PTKGFASVSEKAHKSTVWQ-VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI  324 (357)
T ss_dssp             TTTEEEEEEEECCSSCEEE-EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE
T ss_pred             cccceeeeccCCCcCCEEE-EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe
Confidence            3 2232     56555544 44677766 8999999999999998743211                             


Q ss_pred             ceeEeecCCCccC-CCCCCCeEEEeecCCC
Q 021484          268 AYRERRYNAADFE-SDEEEGETYLLGFSDS  296 (312)
Q Consensus       268 ~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~  296 (312)
                      .-..+.+++..+. +...++.+.+|++...
T Consensus       325 ~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          325 SSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             eEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            1126677777777 6777888999888654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.4e-31  Score=222.32  Aligned_cols=248  Identities=11%  Similarity=0.067  Sum_probs=185.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+..         .+|...|.+++|+|+++.+|++++.|+.|++||+.+....             .
T Consensus        98 i~iwd~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------------~  155 (383)
T 3ei3_B           98 IILWDYDVQNKTSFIQG---------MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQ-------------V  155 (383)
T ss_dssp             EEEEETTSTTCEEEECC---------CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEE-------------E
T ss_pred             EEEEeCCCcccceeeec---------CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceE-------------E
Confidence            57899987665444432         1388899999999943389999999999999999864321             1


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ......|...|.+++|+|++++|+++ .|+.|++||+..                 +....+.+|...  |.+++| +|+
T Consensus       156 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----------------~~~~~~~~h~~~--v~~~~~-~~~  215 (383)
T 3ei3_B          156 FAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-----------------HEIFKEKLHKAK--VTHAEF-NPR  215 (383)
T ss_dssp             EECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-----------------CEEEEEECSSSC--EEEEEE-CSS
T ss_pred             EeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-----------------CEEEEeccCCCc--EEEEEE-CCC
Confidence            11113456889999999999999887 599999999953                 577888888866  999999 899


Q ss_pred             CC-EEEEeccCceEEEEeccC----CeeEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCCC-CCCCCC--
Q 021484          160 DE-YVMSGSDCGHLFIWKKKG----GKLVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDF-PPLPDN--  230 (312)
Q Consensus       160 ~~-~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~--  230 (312)
                      ++ +|++++.|+.|++||+++    ++++..+ +|...|.+++|+| ++.+|++++.|+.|++||+++... ..+..+  
T Consensus       216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  294 (383)
T 3ei3_B          216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH  294 (383)
T ss_dssp             CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence            98 899999999999999987    5666666 6999999999999 999999999999999999987653 222212  


Q ss_pred             -----hhhhhhh----------hccCCCCceeEEecCCceEEEEEecccCcc-----------cee-EeecCCCccCCCC
Q 021484          231 -----AEKIMKA----------NKQGREDHSRITLTPDVIMHVLRLQRRQTL-----------AYR-ERRYNAADFESDE  283 (312)
Q Consensus       231 -----~~~~~~~----------~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~-----------~~~-~~~~~~~~~~~~~  283 (312)
                           ...+ ..          ..+++++.+  +++.|+.+++||+.+....           ... .+.+++..+++..
T Consensus       295 ~~~~~~~~~-~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s  371 (383)
T 3ei3_B          295 RQFQHLTPI-KATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM  371 (383)
T ss_dssp             CCCTTSCCC-CCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred             cccccccce-EEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec
Confidence                 1111 11          223344444  6778999999998654321           111 5666777776664


Q ss_pred             CCCeEEEeecCC
Q 021484          284 EEGETYLLGFSD  295 (312)
Q Consensus       284 ~~~~v~~~~~~~  295 (312)
                       ++.|.+|++++
T Consensus       372 -d~~i~iw~~~~  382 (383)
T 3ei3_B          372 -GFNILIWNRED  382 (383)
T ss_dssp             -TTEEEEEECC-
T ss_pred             -CCcEEEEecCC
Confidence             67788887753

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.7e-31  Score=233.11  Aligned_cols=261  Identities=9%  Similarity=0.059  Sum_probs=180.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+...............+.....+|...|++++|+|.  ..|++|+.||+|++||+++++              .+
T Consensus       237 vrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~--------------~~  300 (524)
T 2j04_B          237 INFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPE--------------VP  300 (524)
T ss_dssp             EEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCS--------------SC
T ss_pred             EEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCC--------------Cc
Confidence            57899876542210000000011112458899999999985  479999999999999998764              23


Q ss_pred             cccccCCCccEEEE--EEccCC-CeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe
Q 021484           81 RHLIGKNNIHITGL--AYSNTS-ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  156 (312)
Q Consensus        81 ~~~~~~~~~~i~~~--~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  156 (312)
                      ...+.+|...|.++  +|+|++ .+|+++ .|++|++||++++                +....+.+|.....|.+++| 
T Consensus       301 ~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~----------------~~~~~~~~~~~~~~v~~v~f-  363 (524)
T 2j04_B          301 SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI----------------ATTKTTVSRFRGSNLVPVVY-  363 (524)
T ss_dssp             SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH----------------HHHCEEEEECSCCSCCCEEE-
T ss_pred             eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC----------------CcccccccccccCcccceEe-
Confidence            33337899999999  578888 788887 5999999999886                56667777754223789999 


Q ss_pred             cCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChh----
Q 021484          157 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAE----  232 (312)
Q Consensus       157 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~----  232 (312)
                      +|+++.+++++.|++|++||+++++++..+.+|.+.|++++|+|++++|++|+.|++|++||+....+........    
T Consensus       364 sp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~  443 (524)
T 2j04_B          364 CPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKS  443 (524)
T ss_dssp             ETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCC
T ss_pred             CCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceee
Confidence            8999999999999999999999999888888999999999999999999999999999999987654333221110    


Q ss_pred             hhhhhhccCCCCceeEEecCCceEEEEE--------ecccCcccee-EeecCCC---ccCCCCCCCeEEEeecCC
Q 021484          233 KIMKANKQGREDHSRITLTPDVIMHVLR--------LQRRQTLAYR-ERRYNAA---DFESDEEEGETYLLGFSD  295 (312)
Q Consensus       233 ~~~~~~~~~~~~~~l~s~~~d~~i~i~~--------~~~~~~~~~~-~~~~~~~---~~~~~~~~~~v~~~~~~~  295 (312)
                      ..+....+++++..+ ....+..+..|+        +......++. .+.|+..   .++++..+|.|.++++.-
T Consensus       444 ~~v~~v~~sp~g~~~-~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          444 LRLWKWDYSIKDDKY-RIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CEEEECBCCSSSCEE-EECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             eEEEEeccCCCCCeE-EccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            011122345554433 222222222222        2222233333 7777753   678888888898888743

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.98  E-value=7e-31  Score=225.44  Aligned_cols=216  Identities=13%  Similarity=0.207  Sum_probs=175.1

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      +|...|++++|+|++ .+|++++.||.|++||. +++              .... +..|...|.+++|+|++++|+++ 
T Consensus       106 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~~~-~~~--------------~~~~-~~~~~~~v~~~~~~~~~~~l~~~~  168 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDG-NSIVTGVENGELRLWNK-TGA--------------LLNV-LNFHRAPIVSVKWNKDGTHIISMD  168 (425)
T ss_dssp             --CBCEEEEEECTTS-SEEEEEETTSCEEEEET-TSC--------------EEEE-ECCCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeC-CCC--------------eeee-ccCCCccEEEEEECCCCCEEEEEe
Confidence            368899999999998 89999999999999993 343              1222 26789999999999999988886 


Q ss_pred             cCCcEEEEEcCCCcCC----------------------------------------CCCcCCcccccCCCCCceEecccC
Q 021484          107 NDELVYLFEKNMGLGP----------------------------------------SPLSLSPEDLQKREEPQVYSGHRN  146 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  146 (312)
                      .|+.|++||+.++...                                        ....+..+++...+....+..|..
T Consensus       169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~  248 (425)
T 1r5m_A          169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHG  248 (425)
T ss_dssp             TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSS
T ss_pred             cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCC
Confidence            5999999999765310                                        011334445556666777777876


Q ss_pred             CceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-C
Q 021484          147 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-P  225 (312)
Q Consensus       147 ~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~  225 (312)
                      .  |.+++| +|++++|++++.||.|++||+++++.+..+..|...|.+++|+|++ .+++++.|+.|++||+.+++. .
T Consensus       249 ~--i~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~  324 (425)
T 1r5m_A          249 P--ISVLEF-NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA  324 (425)
T ss_dssp             C--EEEEEE-ETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE
T ss_pred             c--eEEEEE-CCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE
Confidence            5  999999 8999999999999999999999999999999999999999999999 999999999999999988763 3


Q ss_pred             CCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          226 PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      .+..+...+ ....+++++.++++++.|+.+++|++....
T Consensus       325 ~~~~~~~~i-~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          325 LSIVDGVPI-FAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEECTTCCE-EEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             ecccCCccE-EEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            344444444 444578889999999999999999987654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.98  E-value=1.1e-30  Score=217.59  Aligned_cols=240  Identities=14%  Similarity=0.104  Sum_probs=192.0

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      +|..+|++++|+|++ ++|++++ ||.|++||+.+++....      +..+    ....|...|.+++|+|++++|+++ 
T Consensus        49 ~h~~~v~~~~~~~~~-~~l~~~~-dg~i~iw~~~~~~~~~~------~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~  116 (337)
T 1gxr_A           49 NHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKSP------VSQL----DCLNRDNYIRSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             CCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCSC------SEEE----ECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred             cCCCceEEEEEecCC-cEEEEcC-CCeEEEEECCCCCceee------eecc----cccCCCCcEEEEEEcCCCCEEEEEc
Confidence            489999999999998 7999988 99999999987652111      1100    012688999999999999988886 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .|+.|++||+.++.              ......+..|...  +.+++| +|++++|++++.||.|++||+++++.+..+
T Consensus       117 ~d~~i~~~d~~~~~--------------~~~~~~~~~~~~~--i~~~~~-~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~  179 (337)
T 1gxr_A          117 EASTLSIWDLAAPT--------------PRIKAELTSSAPA--CYALAI-SPDSKVCFSCCSDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             SSSEEEEEECCCC----------------EEEEEEECSSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCcEEEEECCCCC--------------cceeeecccCCCc--eEEEEE-CCCCCEEEEEeCCCcEEEEeCCCCceeeee
Confidence            59999999998761              0144556677755  999999 999999999999999999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      ..|...|.+++|+|+++++++++.|+.|++||+++++......+...+ ....+++++.++++++.++.+++|++.....
T Consensus       180 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~  258 (337)
T 1gxr_A          180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI-FSLGYCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE-EEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCce-EEEEECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence            999999999999999999999999999999999887642222233333 4445778899999999999999999875432


Q ss_pred             c---------ceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          267 L---------AYRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       267 ~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      .         ....+.+++..+.+...++.+.+++...+.
T Consensus       259 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence            2         122667777788888888899999987664

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=1.1e-30  Score=223.48  Aligned_cols=238  Identities=13%  Similarity=0.119  Sum_probs=181.9

Q ss_pred             CCCccceEEEEEcC-CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEE
Q 021484           27 PMNSIRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLI  104 (312)
Q Consensus        27 ~~h~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~  104 (312)
                      .+|..+|++++|+| ++ ++|++|+.||+|++||+.++......  .      .....+.+|...|.+++|+|++ .+|+
T Consensus        78 ~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~~~--~------~~~~~~~~h~~~v~~~~~~p~~~~~l~  148 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPL--R------EPVITLEGHTKRVGIVAWHPTAQNVLL  148 (402)
T ss_dssp             CCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSSCB--C------SCSEEEECCSSCEEEEEECSSBTTEEE
T ss_pred             ecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCcccc--C------CceEEecCCCCeEEEEEECcCCCCEEE
Confidence            46999999999999 66 89999999999999999987532110  0      1112237899999999999998 5888


Q ss_pred             Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceE--ecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe
Q 021484          105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY--SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~  181 (312)
                      ++ .|+.|++||+.++                +....+  .+|...  |.+++| +|++++|++++.||.|++||+++++
T Consensus       149 s~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~  209 (402)
T 2aq5_A          149 SAGCDNVILVWDVGTG----------------AAVLTLGPDVHPDT--IYSVDW-SRDGALICTSCRDKRVRVIEPRKGT  209 (402)
T ss_dssp             EEETTSCEEEEETTTT----------------EEEEEECTTTCCSC--EEEEEE-CTTSSCEEEEETTSEEEEEETTTTE
T ss_pred             EEcCCCEEEEEECCCC----------------CccEEEecCCCCCc--eEEEEE-CCCCCEEEEEecCCcEEEEeCCCCc
Confidence            86 5999999999987                677777  667765  999999 9999999999999999999999999


Q ss_pred             eEEEe-ecCccc-eEEEEEcCCCCeEEEE---eCCCcEEEccCCCCCC-C-CC-CCChhhhhhhhccCCCCceeE-EecC
Q 021484          182 LVRLM-VGDRHV-VNQLEPHPHIPMFATC---GIEKTVKLWAPMPTDF-P-PL-PDNAEKIMKANKQGREDHSRI-TLTP  252 (312)
Q Consensus       182 ~~~~~-~~~~~~-v~~~~~~p~~~~l~t~---~~d~~i~iwd~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~l~-s~~~  252 (312)
                      .+..+ ..|.+. +..++|+|++.+|+++   +.|+.|++||+++... . .. ..+...+ ....+++++.+++ +++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~g~~  288 (402)
T 2aq5_A          210 VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV-LLPFFDPDTNIVYLCGKG  288 (402)
T ss_dssp             EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC-EEEEEETTTTEEEEEETT
T ss_pred             eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce-eEEEEcCCCCEEEEEEcC
Confidence            99888 678765 8999999999999999   7899999999987653 1 11 1233334 3345677777775 6778


Q ss_pred             CceEEEEEecccCc-cce------------eEeecCCCccCCCCCCCeEEEeecCC
Q 021484          253 DVIMHVLRLQRRQT-LAY------------RERRYNAADFESDEEEGETYLLGFSD  295 (312)
Q Consensus       253 d~~i~i~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~~  295 (312)
                      |+.|++|++..... ...            ..+.|+...+.+.++  .+.++++..
T Consensus       289 dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~--~~~~~~l~~  342 (402)
T 2aq5_A          289 DSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCE--IARFYKLHE  342 (402)
T ss_dssp             CSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTE--EEEEEEEET
T ss_pred             CCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecce--eEEEEEcCC
Confidence            99999999987652 111            134555555555444  355666544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.98  E-value=4.6e-31  Score=240.89  Aligned_cols=239  Identities=15%  Similarity=0.182  Sum_probs=190.2

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      +|...|++++|+|++..+|++|+.|++|++|++.+....         .. .....+.+|...|.+++|+|++++|+++ 
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~---------~~-~~~~~~~~h~~~v~~v~~s~~g~~l~sgs  449 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA---------YG-VAQRRLTGHSHFVEDVVLSSDGQFALSGS  449 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC---------SC-EEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc---------cc-cccceecCCCCcEEEEEECCCCCEEEEEe
Confidence            599999999999987689999999999999999865310         00 1122337899999999999999999997 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .|+.|++||+.++                .....+.+|...  |.+++| +|++++|++++.|++|++||..........
T Consensus       450 ~Dg~v~vwd~~~~----------------~~~~~~~~h~~~--v~~~~~-s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~  510 (694)
T 3dm0_A          450 WDGELRLWDLAAG----------------VSTRRFVGHTKD--VLSVAF-SLDNRQIVSASRDRTIKLWNTLGECKYTIS  510 (694)
T ss_dssp             TTSEEEEEETTTT----------------EEEEEEECCSSC--EEEEEE-CTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             CCCcEEEEECCCC----------------cceeEEeCCCCC--EEEEEE-eCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence            5999999999887                677888999976  999999 999999999999999999998755443332


Q ss_pred             ---ecCccceEEEEEcCCC--CeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          187 ---VGDRHVVNQLEPHPHI--PMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       187 ---~~~~~~v~~~~~~p~~--~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                         .+|...|.+++|+|++  ..+++++.|++|++||+++.+. ..+.+|...+ ....+++++.++++++.|+.|++||
T Consensus       511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v-~~v~~spdg~~l~sg~~Dg~i~iwd  589 (694)
T 3dm0_A          511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYV-STVAVSPDGSLCASGGKDGVVLLWD  589 (694)
T ss_dssp             SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE-EEEEECTTSSEEEEEETTSBCEEEE
T ss_pred             cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE-EEEEEeCCCCEEEEEeCCCeEEEEE
Confidence               3688899999999987  5799999999999999998764 4566676666 4445788999999999999999999


Q ss_pred             ecccCcc---------ceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          261 LQRRQTL---------AYRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       261 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      +......         ....++++...+.... ++.+.++|+..+.
T Consensus       590 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~  634 (694)
T 3dm0_A          590 LAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKS  634 (694)
T ss_dssp             TTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred             CCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence            8765322         1125566655555443 3458888886653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.98  E-value=1.5e-31  Score=226.70  Aligned_cols=221  Identities=10%  Similarity=0.034  Sum_probs=165.0

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.....+..         +.+|..+|++++|+|++ ++|++++.|+.|++||+.+++.            +..
T Consensus        35 i~iw~~~~~~~~~~~~---------~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~~------------~~~   92 (377)
T 3dwl_C           35 VELYEQDGNGWKHART---------FSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDGT------------WKQ   92 (377)
T ss_dssp             BCEEEEETTEEEECCC---------BCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC------C------------CCC
T ss_pred             EEEEEccCCceEEEEE---------EecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCCc------------eee
Confidence            5788887652111111         13489999999999998 8999999999999999987650            012


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec-ccCCceeeEEEEecC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGP  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~s~  158 (312)
                      ...+..|...|.+++|+|++++|+++ .|+.|++||+.++.             .......+.+ |...  |.+++| +|
T Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------------~~~~~~~~~~~h~~~--v~~~~~-~~  156 (377)
T 3dwl_C           93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN-------------DWWVSKHLKRPLRST--ILSLDW-HP  156 (377)
T ss_dssp             EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC------------------CCCCEEECSSCCSC--EEEEEE-CT
T ss_pred             eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc-------------cceeeeEeecccCCC--eEEEEE-cC
Confidence            22236789999999999999988886 59999999998761             0014566776 7755  999999 99


Q ss_pred             CCCEEEEeccCceEEEEecc------------------CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484          159 NDEYVMSGSDCGHLFIWKKK------------------GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  220 (312)
Q Consensus       159 ~~~~l~~~~~dg~v~iwd~~------------------~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  220 (312)
                      ++++|++++.|+.|++||+.                  .++++..+ .|...|.+++|+|++++|++++.|++|++||+.
T Consensus       157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~  235 (377)
T 3dwl_C          157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS  235 (377)
T ss_dssp             TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred             CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            99999999999999999985                  35566666 899999999999999999999999999999998


Q ss_pred             CCCC-----CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          221 PTDF-----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       221 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      ++..     ..+..|...+. ...+++++.++++++.++.+ +|+..
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          236 APEQPPRALITVKLSQLPLR-SLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             STTSCEEECCCEECSSSCEE-EEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CCCCcceeeEeecCCCCceE-EEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            8763     55566666554 44577888899988877766 66544

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.9e-31  Score=228.69  Aligned_cols=214  Identities=17%  Similarity=0.275  Sum_probs=169.4

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeEEEe
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~  106 (312)
                      +|...|++++|+|+++++|++++.|+.|++||+.+++....     ....+.. .....|...|.+++|+|+ +.+|+++
T Consensus       111 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-----~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~  184 (416)
T 2pm9_A          111 NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS-----NYTPLTP-GQSMSSVDEVISLAWNQSLAHVFASA  184 (416)
T ss_dssp             CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT-----TCCCBCC-CCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred             CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc-----ccccccc-ccccCCCCCeeEEEeCCCCCcEEEEE
Confidence            48899999999998448999999999999999987751100     0000011 112578899999999999 5788886


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC----CceeeEEEEecCCC-CEEEEeccCc---eEEEEec
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN----SQTVKGVNFFGPND-EYVMSGSDCG---HLFIWKK  177 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~v~~~s~~~-~~l~~~~~dg---~v~iwd~  177 (312)
                       .|+.|++||+.++                +....+..+..    ...+.+++| +|++ .+|++++.|+   .|++||+
T Consensus       185 ~~dg~v~iwd~~~~----------------~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~d~~~~~i~~~d~  247 (416)
T 2pm9_A          185 GSSNFASIWDLKAK----------------KEVIHLSYTSPNSGIKQQLSVVEW-HPKNSTRVATATGSDNDPSILIWDL  247 (416)
T ss_dssp             SSSSCEEEEETTTT----------------EEEEEECCCCCSSCCCCCEEEEEE-CSSCTTEEEEEECCSSSCCCCEEET
T ss_pred             cCCCCEEEEECCCC----------------CcceEEeccccccccCCceEEEEE-CCCCCCEEEEEECCCCCceEEEEeC
Confidence             5999999999887                56666665520    134999999 8886 6899999998   9999999


Q ss_pred             cCC-eeEEEee-cCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCC-ceeEEecC
Q 021484          178 KGG-KLVRLMV-GDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGRED-HSRITLTP  252 (312)
Q Consensus       178 ~~~-~~~~~~~-~~~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~l~s~~~  252 (312)
                      +++ +++..+. +|...|.+++|+| ++++|++++.|++|++||+++++. ..+..|...+.. ..+++++ .++++++.
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~~l~s~~~  326 (416)
T 2pm9_A          248 RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFK-TKFAPEAPDLFACASF  326 (416)
T ss_dssp             TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCC-EEECTTCTTEEEECCS
T ss_pred             CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEE-EEECCCCCCEEEEEec
Confidence            986 6777787 8999999999999 899999999999999999988764 455566666644 4467776 89999999


Q ss_pred             CceEEEEEecccC
Q 021484          253 DVIMHVLRLQRRQ  265 (312)
Q Consensus       253 d~~i~i~~~~~~~  265 (312)
                      |+.+++|++....
T Consensus       327 d~~i~iw~~~~~~  339 (416)
T 2pm9_A          327 DNKIEVQTLQNLT  339 (416)
T ss_dssp             SSEEEEEESCCCC
T ss_pred             CCcEEEEEccCCC
Confidence            9999999987643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.98  E-value=2.1e-30  Score=225.67  Aligned_cols=261  Identities=13%  Similarity=0.120  Sum_probs=195.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+.           +|..+|++++|+|++  +|++|+.||+|++||+.+++.              .
T Consensus       144 i~vwd~~~~~~~~~~~-----------~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~--------------~  196 (464)
T 3v7d_B          144 IRVYDSINKKFLLQLS-----------GHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCC--------------T  196 (464)
T ss_dssp             EEEEETTTTEEEEEEC-----------CCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEE--------------E
T ss_pred             EEEEECCCCcEEEEEe-----------CCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcE--------------E
Confidence            5789988765433332           489999999999976  899999999999999998862              2


Q ss_pred             cccccCCCccEEEEEEcc--CCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCc-------ccccCCCCCceEecccCCcee
Q 021484           81 RHLIGKNNIHITGLAYSN--TSELLISY-NDELVYLFEKNMGLGPSPLSLSP-------EDLQKREEPQVYSGHRNSQTV  150 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v  150 (312)
                      ..+ .+|...|.+++|++  ++.+++++ .|+.|++||+.+...........       ...........+.+|...  +
T Consensus       197 ~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v  273 (464)
T 3v7d_B          197 HVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS--V  273 (464)
T ss_dssp             EEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC--E
T ss_pred             EEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce--E
Confidence            222 67999999999994  66788886 59999999998763110000000       000000123456667654  7


Q ss_pred             eEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCC
Q 021484          151 KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD  229 (312)
Q Consensus       151 ~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~  229 (312)
                      .++   +++++++++++.||.|++||+++++++..+.+|...|.+++|+|+++++++++.|++|++||+++++. ..+.+
T Consensus       274 ~~~---~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  350 (464)
T 3v7d_B          274 RTV---SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG  350 (464)
T ss_dssp             EEE---EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEE---cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence            766   45789999999999999999999999999999999999999999999999999999999999988763 55666


Q ss_pred             ChhhhhhhhccCCCCceeEEecCCceEEEEEecccCccc---------eeEeecCCCccCCCCCCCeEEEeecCCCCC
Q 021484          230 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA---------YRERRYNAADFESDEEEGETYLLGFSDSDA  298 (312)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  298 (312)
                      |...+.... +  ++.++++++.|+.+++|++.......         ...+.+++..+.+.. ++.+.++++..+..
T Consensus       351 h~~~v~~~~-~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~  424 (464)
T 3v7d_B          351 HTALVGLLR-L--SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL  424 (464)
T ss_dssp             CSSCEEEEE-E--CSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred             CCCcEEEEE-E--cCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence            666664333 3  36799999999999999987643221         124566666666665 67899999988763

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=9.2e-32  Score=227.97  Aligned_cols=233  Identities=12%  Similarity=0.122  Sum_probs=174.1

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  107 (312)
                      |..+|++++|+|++ ++|++|+.|+.|++||+.++...            .... +.+|...|.+++|+|++++|+++ .
T Consensus        10 ~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~~~------------~~~~-~~~h~~~v~~~~~s~~~~~l~s~s~   75 (377)
T 3dwl_C           10 LPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNGWK------------HART-FSDHDKIVTCVDWAPKSNRIVTCSQ   75 (377)
T ss_dssp             CSSCCSCCEECSSS-SEEECCCSSSCBCEEEEETTEEE------------ECCC-BCCCSSCEEEEEECTTTCCEEEEET
T ss_pred             CCCcEEEEEECCCC-CEEEEecCCCEEEEEEccCCceE------------EEEE-EecCCceEEEEEEeCCCCEEEEEeC
Confidence            45689999999998 89999999999999999977310            1222 26899999999999999988887 5


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe---eEE
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVR  184 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~---~~~  184 (312)
                      |+.|++||+.++.             .......+.+|...  |.+++| +|++++|++++.|+.|++||+++++   ...
T Consensus        76 d~~v~vwd~~~~~-------------~~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  139 (377)
T 3dwl_C           76 DRNAYVYEKRPDG-------------TWKQTLVLLRLNRA--ATFVRW-SPNEDKFAVGSGARVISVCYFEQENDWWVSK  139 (377)
T ss_dssp             TSSEEEC-------------------CCCCEEECCCCSSC--EEEEEC-CTTSSCCEEEESSSCEEECCC-----CCCCE
T ss_pred             CCeEEEEEcCCCC-------------ceeeeeEecccCCc--eEEEEE-CCCCCEEEEEecCCeEEEEEECCcccceeee
Confidence            9999999998761             01245556677765  999999 9999999999999999999999877   367


Q ss_pred             Eeec-CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-------------------CCCCCCChhhhhhhhccCCCC
Q 021484          185 LMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-------------------FPPLPDNAEKIMKANKQGRED  244 (312)
Q Consensus       185 ~~~~-~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~  244 (312)
                      .+.. |...|.+++|+|++++|++++.|++|++||+....                   ...+ .|...+ ....+++++
T Consensus       140 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v-~~~~~sp~~  217 (377)
T 3dwl_C          140 HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWV-HAVGFSPSG  217 (377)
T ss_dssp             EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSE-EEEEECTTS
T ss_pred             EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceE-EEEEECCCC
Confidence            7777 99999999999999999999999999999986322                   1222 454444 445578899


Q ss_pred             ceeEEecCCceEEEEEecccCc----c----------ceeEeecCCCccCCCCCCCeEEEeecC
Q 021484          245 HSRITLTPDVIMHVLRLQRRQT----L----------AYRERRYNAADFESDEEEGETYLLGFS  294 (312)
Q Consensus       245 ~~l~s~~~d~~i~i~~~~~~~~----~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~  294 (312)
                      .++++++.|+.+++|++.....    .          ....+.+++..+.+..+++ +++++..
T Consensus       218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~~~  280 (377)
T 3dwl_C          218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS-PILLQGN  280 (377)
T ss_dssp             SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS-EEEECCC
T ss_pred             CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc-EEEEEeC
Confidence            9999999999999999987644    1          1125566776676665554 4466554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=1.7e-30  Score=219.53  Aligned_cols=219  Identities=13%  Similarity=0.080  Sum_probs=174.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+...+...         .+|...|++++|+|++ ++|++++.||.|++||+.+++..             .
T Consensus        32 v~i~~~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~-------------~   88 (372)
T 1k8k_C           32 VHIYEKSGNKWVQVHEL---------KEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWK-------------P   88 (372)
T ss_dssp             EEEEEEETTEEEEEEEE---------ECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEEE-------------E
T ss_pred             EEEEeCCCCcEEeeeee---------cCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCCCeee-------------e
Confidence            57888876642122222         1378899999999988 89999999999999999887621             1


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCC---CceE-ecccCCceeeEEEE
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREE---PQVY-SGHRNSQTVKGVNF  155 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~v~~v~~  155 (312)
                      ......|...|.+++|+|++++|+++ .|+.|++||+...                ..   ...+ ..|...  |.+++|
T Consensus        89 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~----------------~~~~~~~~~~~~~~~~--i~~~~~  150 (372)
T 1k8k_C           89 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE----------------NDWWVCKHIKKPIRST--VLSLDW  150 (372)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT----------------TTEEEEEEECTTCCSC--EEEEEE
T ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCC----------------CcceeeeeeecccCCC--eeEEEE
Confidence            11225688899999999999988886 5999999999876                22   2222 345544  999999


Q ss_pred             ecCCCCEEEEeccCceEEEEec------------------cCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEc
Q 021484          156 FGPNDEYVMSGSDCGHLFIWKK------------------KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW  217 (312)
Q Consensus       156 ~s~~~~~l~~~~~dg~v~iwd~------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iw  217 (312)
                       +|++++|++++.||.|++||+                  ..++++..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus       151 -~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  229 (372)
T 1k8k_C          151 -HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA  229 (372)
T ss_dssp             -CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             -cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEE
Confidence             999999999999999999995                  4678888998999999999999999999999999999999


Q ss_pred             cCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          218 APMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       218 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      |+++++. ..+..+...+ ....+++++.+++++ .|+.+++|++..
T Consensus       230 d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          230 DADKKMAVATLASETLPL-LAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EGGGTTEEEEEECSSCCE-EEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             ECCCCceeEEEccCCCCe-EEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9987763 4454455444 344467778877777 999999999977

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.6e-31  Score=233.22  Aligned_cols=232  Identities=9%  Similarity=0.015  Sum_probs=175.1

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCC-----CcEEEEEeCCCeEEEEEccCCeecCCCCCCCCc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN-----PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV   75 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~   75 (312)
                      |+|||+.+.+....... ..      .+|...|.+++|+|++     ..+||+++.||+|++||+.++.....    ...
T Consensus       185 I~iWd~~~~~~~~~~~~-~l------~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~----~~~  253 (524)
T 2j04_B          185 IQIFKMNTSTLHCVKVQ-TI------VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH----VFK  253 (524)
T ss_dssp             EEEEEEETTTCCEEEEE-EE------EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS----EEE
T ss_pred             EEEEEccCCCCCceEEE-EE------EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc----cce
Confidence            57999876553211100 00      1256789999999961     26999999999999999986642100    000


Q ss_pred             ccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEE-
Q 021484           76 DTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV-  153 (312)
Q Consensus        76 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v-  153 (312)
                      ....+...+.+|...|++++|++++ .|+++ .||+|++||++++.               .+...+.+|...  |.++ 
T Consensus       254 ~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~---------------~~~~~~~~H~~~--V~sv~  315 (524)
T 2j04_B          254 MCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE---------------VPSFYDQVHDSY--ILSVS  315 (524)
T ss_dssp             CCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS---------------SCSEEEECSSSC--EEEEE
T ss_pred             eecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC---------------CceEEeeccccc--EEEEE
Confidence            0001112236789999999999865 67776 69999999998651               344568889866  9999 


Q ss_pred             -EEecCCC-CEEEEeccCceEEEEeccCCeeEEEeecCcc--ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCC
Q 021484          154 -NFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP  228 (312)
Q Consensus       154 -~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~  228 (312)
                       +| ++++ ++|++|+.|++|++||+++++++..+.+|..  .|.+++|+|+++.+++++.|++|++||++.+.. ..+.
T Consensus       316 ~~~-s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~  394 (524)
T 2j04_B          316 TAY-SDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV  394 (524)
T ss_dssp             EEC-CTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE
T ss_pred             EEc-CCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee
Confidence             45 8887 8999999999999999998887777776653  578999999999999999999999999988764 5566


Q ss_pred             CChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          229 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      +|...+... .+++++.++++++.|+.+++|++..
T Consensus       395 gH~~~V~sv-a~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          395 SRETTITAI-GVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             ECSSCEEEE-ECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             cCCCceEEE-EeCCCCCeEEEEECCCEEEEEechH
Confidence            777777554 4788999999999999999999754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=3e-30  Score=220.03  Aligned_cols=224  Identities=8%  Similarity=0.034  Sum_probs=173.2

Q ss_pred             CeeecccCccc----eeeEEecccccCCcCCCCccceEEEEEcCC---CC---cEEEEEeCCCeEEEEEccCCeecCCCC
Q 021484            1 MWQFDLRSDSA----TRLFYCSSFSENSKQPMNSIRLNAIVIDPR---NP---NYFAVGGSDEYARVYDIRKCHWYSPIS   70 (312)
Q Consensus         1 v~~wd~~~~~~----~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~   70 (312)
                      |++||+.+.+.    ..+...         .+|..+|++++|+|+   .+   .+|++++.||.|++|++.+++...   
T Consensus        38 i~iw~~~~~~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~---  105 (397)
T 1sq9_A           38 LKVWDNKLLDNENPKDKSYSH---------FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK---  105 (397)
T ss_dssp             EEEEESBCCTTCCGGGGEEEE---------ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC---
T ss_pred             EEEEECCCcccccCCCcceEE---------ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccc---
Confidence            57899987651    112222         137889999999997   23   589999999999999998775200   


Q ss_pred             CCCCcccccccccccCC-----CccEEEEEEc----cCCCe-EEEe-cCCcEEEEEcCC------CcCCCCCcCCccccc
Q 021484           71 SDTPVDTFCPRHLIGKN-----NIHITGLAYS----NTSEL-LISY-NDELVYLFEKNM------GLGPSPLSLSPEDLQ  133 (312)
Q Consensus        71 ~~~~~~~~~~~~~~~~~-----~~~i~~~~~~----~~~~~-l~s~-~d~~i~iwd~~~------~~~~~~~~~~~~~~~  133 (312)
                            . .....+..|     ...|.+++|+    |++.+ |+++ .|+.|++||+.+      +              
T Consensus       106 ------~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------  164 (397)
T 1sq9_A          106 ------K-VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS--------------  164 (397)
T ss_dssp             ------C-EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH--------------
T ss_pred             ------c-ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc--------------
Confidence                  0 001222556     5899999999    99998 8886 599999999987      4              


Q ss_pred             CCCCCc-----eEec-------ccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec---C---ccceEE
Q 021484          134 KREEPQ-----VYSG-------HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---D---RHVVNQ  195 (312)
Q Consensus       134 ~~~~~~-----~~~~-------~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~---~~~v~~  195 (312)
                        +.+.     .+.+       |..  .+.+++| +|++ +|++++.||.|++||+++++++..+..   |   ...|.+
T Consensus       165 --~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~-~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~  238 (397)
T 1sq9_A          165 --LTLNWSPTLELQGTVESPMTPSQ--FATSVDI-SERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  238 (397)
T ss_dssp             --TTTCCCCEEEEEEEECCSSSSCC--CCCEEEE-CTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             --ceeeccCcceeeeeeccccCCCC--CceEEEE-CCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence              3444     5644       454  4999999 8999 999999999999999999999999998   8   999999


Q ss_pred             EEEcCCCCeEEEEeCC---CcEEEccCCCCCC-CCCCC-------------ChhhhhhhhccCCCCceeEEecCCceEEE
Q 021484          196 LEPHPHIPMFATCGIE---KTVKLWAPMPTDF-PPLPD-------------NAEKIMKANKQGREDHSRITLTPDVIMHV  258 (312)
Q Consensus       196 ~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  258 (312)
                      ++|+|++++|++++.|   +.|++||+++++. ..+..             |...+ ....+++++.++++++.|+.+++
T Consensus       239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i  317 (397)
T 1sq9_A          239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV-MSLSFNDSGETLCSAGWDGKLRF  317 (397)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCE-EEEEECSSSSEEEEEETTSEEEE
T ss_pred             EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcE-EEEEECCCCCEEEEEeCCCeEEE
Confidence            9999999999999999   9999999988763 44444             55555 44457888999999999999999


Q ss_pred             EEeccc
Q 021484          259 LRLQRR  264 (312)
Q Consensus       259 ~~~~~~  264 (312)
                      |++...
T Consensus       318 wd~~~~  323 (397)
T 1sq9_A          318 WDVKTK  323 (397)
T ss_dssp             EETTTT
T ss_pred             EEcCCC
Confidence            998654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=8.5e-30  Score=217.66  Aligned_cols=228  Identities=16%  Similarity=0.243  Sum_probs=172.5

Q ss_pred             eeecccCccceeeEEecccccCCcCCCCccceEEEEEcC-CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      ++|++...+...++.           +|..+|++++|+| ++ ++|++|+.||.|++||+.+++......... ... ..
T Consensus        26 ~v~~~~~~~~~~~~~-----------~h~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~-~~   91 (408)
T 4a11_B           26 RVLGLELNKDRDVER-----------IHGGGINTLDIEPVEG-RYMLSGGSDGVIVLYDLENSSRQSYYTCKA-VCS-IG   91 (408)
T ss_dssp             HHHTEEECTTEEECC-----------CCSSCEEEEEECTTTC-CEEEEEETTSCEEEEECCCCSSSSCEEECE-EEE-EC
T ss_pred             eeeccccCcceeeee-----------ccCCcEEEEEEecCCC-CEEEEEcCCCeEEEEECCCCcccceEeccc-ccc-cc
Confidence            566666555443332           3889999999999 77 899999999999999999876322110000 000 00


Q ss_pred             cccccCCCccEEEEEEcc-CCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           81 RHLIGKNNIHITGLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                      .....+|...|.+++|+| ++.+|+++ .|+.|++||+.++                +....+. +...  +.++.| .+
T Consensus        92 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------~~~~~~~-~~~~--~~~~~~-~~  151 (408)
T 4a11_B           92 RDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----------------QTADVFN-FEET--VYSHHM-SP  151 (408)
T ss_dssp             TTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT----------------EEEEEEE-CSSC--EEEEEE-CS
T ss_pred             ccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----------------ccceecc-CCCc--eeeeEe-ec
Confidence            111145899999999999 66688886 5999999999887                5555555 4433  888888 66


Q ss_pred             ---CCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCC------
Q 021484          159 ---NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPP------  226 (312)
Q Consensus       159 ---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~------  226 (312)
                         ++.++++++.+|.|++||+++++.+..+..|...|.+++|+|+++. +++++.||.|++||++...  ...      
T Consensus       152 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  231 (408)
T 4a11_B          152 VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG  231 (408)
T ss_dssp             SCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred             CCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence               4559999999999999999999999999999999999999999995 8999999999999997653  111      


Q ss_pred             ---------CCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          227 ---------LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       227 ---------~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                               ...|...+ ....+++++.++++++.|+.+++|++...
T Consensus       232 ~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  277 (408)
T 4a11_B          232 KKSQAVESANTAHNGKV-NGLCFTSDGLHLLTVGTDNRMRLWNSSNG  277 (408)
T ss_dssp             CSCCCTTTSSCSCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ccceeeccccccccCce-eEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence                     12344444 44457788999999999999999998653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=1.7e-30  Score=219.46  Aligned_cols=241  Identities=12%  Similarity=0.050  Sum_probs=182.5

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+++.+....+...         +|...|.+++|+|++ ++|++++.|+.|++||+..++..           ...
T Consensus        76 i~vwd~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~-----------~~~  134 (372)
T 1k8k_C           76 AYVWTLKGRTWKPTLVIL---------RINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDW-----------WVC  134 (372)
T ss_dssp             EEEEEEETTEEEEEEECC---------CCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTE-----------EEE
T ss_pred             EEEEECCCCeeeeeEEee---------cCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcc-----------eee
Confidence            578998776543333321         378899999999998 89999999999999999876410           012


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCccc--ccCCCCCceEecccCCceeeEEEEec
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPED--LQKREEPQVYSGHRNSQTVKGVNFFG  157 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~v~~~s  157 (312)
                      ......|...|.+++|+|++++|+++ .|+.|++||+.............+.  ....+....+.+|...  +.+++| +
T Consensus       135 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~-~  211 (372)
T 1k8k_C          135 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW--VHGVCF-S  211 (372)
T ss_dssp             EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC--EEEEEE-C
T ss_pred             eeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe--EEEEEE-C
Confidence            23336788999999999999988886 5999999997532110000000000  1122455666677755  999999 9


Q ss_pred             CCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC--CC------------
Q 021484          158 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP--TD------------  223 (312)
Q Consensus       158 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~--~~------------  223 (312)
                      |++++|++++.|+.|++||+++++++..+..|...|.+++|+|++.+++++ .|+.|++|++..  +.            
T Consensus       212 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~  290 (372)
T 1k8k_C          212 ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ  290 (372)
T ss_dssp             SSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence            999999999999999999999999999999999999999999999988887 899999999877  31            


Q ss_pred             --------------------C-------CCC-CCChhhhhhhhccCCCC---ceeEEecCCceEEEEEecccCc
Q 021484          224 --------------------F-------PPL-PDNAEKIMKANKQGRED---HSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       224 --------------------~-------~~~-~~~~~~~~~~~~~~~~~---~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                                          .       ..+ .+|...+....+.++++   .++++++.|+.|++|++...+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             ------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             chhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence                                0       222 36677665555555666   8999999999999999876543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.4e-30  Score=214.71  Aligned_cols=262  Identities=10%  Similarity=0.086  Sum_probs=201.1

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+.           +|...|.+++|+|++ ++|++++.||.|++||+.++++.              
T Consensus        56 i~vwd~~~~~~~~~~~-----------~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~--------------  109 (369)
T 3zwl_B           56 ASVWYSLNGERLGTLD-----------GHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSNGQCV--------------  109 (369)
T ss_dssp             EEEEETTTCCEEEEEC-----------CCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCCEE--------------
T ss_pred             EEEEeCCCchhhhhhh-----------hcCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE--------------
Confidence            5789888765433332           378899999999988 89999999999999999988632              


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cC-----CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEE
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-ND-----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  154 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  154 (312)
                      ..+ . +...+.+++|+|++++++++ .+     +.|++||+.......     ............+..+.....+.+++
T Consensus       110 ~~~-~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (369)
T 3zwl_B          110 ATW-K-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH-----ELTKVSEEPIHKIITHEGLDAATVAG  182 (369)
T ss_dssp             EEE-E-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC-----CEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred             EEe-e-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce-----eecccccceeeeccCCcCccceeEEE
Confidence            222 2 67889999999999988886 47     999999998752110     00111112445555665523599999


Q ss_pred             EecCCCCEEEEeccCceEEEEeccC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhh
Q 021484          155 FFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEK  233 (312)
Q Consensus       155 ~~s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~  233 (312)
                      | +|++++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++++|++++.|+.|++||++++.......+...
T Consensus       183 ~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  261 (369)
T 3zwl_B          183 W-STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCP  261 (369)
T ss_dssp             E-CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred             E-cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCC
Confidence            9 99999999999999999999998 788889999999999999999999999999999999999998764222223333


Q ss_pred             hhhhhccCCCCceeEEecCCc--------------eEEEEEecccCcc----------ceeEeecCCCccCCCCCCCeEE
Q 021484          234 IMKANKQGREDHSRITLTPDV--------------IMHVLRLQRRQTL----------AYRERRYNAADFESDEEEGETY  289 (312)
Q Consensus       234 ~~~~~~~~~~~~~l~s~~~d~--------------~i~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~  289 (312)
                      + ....+.+++.++++++.++              .+++|++......          ....+.+++..+.+...++.|.
T Consensus       262 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~  340 (369)
T 3zwl_B          262 L-NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIR  340 (369)
T ss_dssp             E-EEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             c-eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEE
Confidence            3 4455788889999988887              8999997554221          1236777888888888889999


Q ss_pred             EeecCCCC
Q 021484          290 LLGFSDSD  297 (312)
Q Consensus       290 ~~~~~~~~  297 (312)
                      +|++..+.
T Consensus       341 iw~~~~~~  348 (369)
T 3zwl_B          341 LHHFEKSY  348 (369)
T ss_dssp             EEEECHHH
T ss_pred             EEECcccc
Confidence            99986653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=7.2e-30  Score=213.14  Aligned_cols=248  Identities=13%  Similarity=0.109  Sum_probs=189.9

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc--CCCeEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLI  104 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~  104 (312)
                      .+|...|++++|+|++ ++|++|+.||.|++||+.++...           +.....+.+|...|.+++|+|  ++++|+
T Consensus         8 ~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~d~~~l~   75 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSN-----------WELSDSWRAHDSSIVAIDWASPEYGRIIA   75 (351)
T ss_dssp             CCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCC-----------EEEEEEEECCSSCEEEEEECCGGGCSEEE
T ss_pred             cccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCc-----------ceecceeccCCCcEEEEEEcCCCCCCEEE
Confidence            4699999999999998 89999999999999999865310           011222367999999999999  588888


Q ss_pred             Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC--CCEEEEeccCceEEEEeccCCe
Q 021484          105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~--~~~l~~~~~dg~v~iwd~~~~~  181 (312)
                      ++ .|+.|++||+.++.....       ....+....+.+|...  |.+++| +|+  +++|++++.||.|++||+++++
T Consensus        76 s~~~dg~v~vwd~~~~~~~~~-------~~~~~~~~~~~~~~~~--v~~~~~-~~~~~~~~l~~~~~dg~v~iwd~~~~~  145 (351)
T 3f3f_A           76 SASYDKTVKLWEEDPDQEECS-------GRRWNKLCTLNDSKGS--LYSVKF-APAHLGLKLACLGNDGILRLYDALEPS  145 (351)
T ss_dssp             EEETTSCEEEEEECTTSCTTS-------SCSEEEEEEECCCSSC--EEEEEE-CCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred             EEcCCCeEEEEecCCCccccc-------ccCcceeeeecccCCc--eeEEEE-cCCCCCcEEEEecCCCcEEEecCCChH
Confidence            86 599999999987521000       0001235566677765  999999 899  9999999999999999998876


Q ss_pred             eEEEee-------------cCccceEEEEEcCC---CCeEEEEeCCCcEEEccCCCCC---CCCCCCChhhhhhhhccCC
Q 021484          182 LVRLMV-------------GDRHVVNQLEPHPH---IPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGR  242 (312)
Q Consensus       182 ~~~~~~-------------~~~~~v~~~~~~p~---~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~  242 (312)
                      .+..+.             .|...+.+++|+|+   +..+++++.|+.+.+|+...+.   ...+.+|...+. ...+++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~~p  224 (351)
T 3f3f_A          146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIR-SISWAP  224 (351)
T ss_dssp             CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEE-EEEECC
T ss_pred             HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCccee-EEEECC
Confidence            543332             57788999999997   8899999999999888877765   345556666664 444677


Q ss_pred             CC----ceeEEecCCceEEEEEecccC-----------------------------------------------------
Q 021484          243 ED----HSRITLTPDVIMHVLRLQRRQ-----------------------------------------------------  265 (312)
Q Consensus       243 ~~----~~l~s~~~d~~i~i~~~~~~~-----------------------------------------------------  265 (312)
                      ++    .++++++.|+.+++|+++...                                                     
T Consensus       225 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
T 3f3f_A          225 SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD  304 (351)
T ss_dssp             CSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECT
T ss_pred             CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec
Confidence            76    799999999999999987631                                                     


Q ss_pred             --ccce-eEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          266 --TLAY-RERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       266 --~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                        ..+. ..+.+++..+.+...++.|.+|+++.+.
T Consensus       305 h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence              1111 2667777888888888889999886543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=7.7e-30  Score=220.82  Aligned_cols=217  Identities=14%  Similarity=0.161  Sum_probs=164.9

Q ss_pred             cceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCCeecCC-CC---------CCCCcccc---------------cccccc
Q 021484           31 IRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSP-IS---------SDTPVDTF---------------CPRHLI   84 (312)
Q Consensus        31 ~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-~~---------~~~~~~~~---------------~~~~~~   84 (312)
                      .+|++++|+|++. .+|++++.|+.|++||+.+++.... ..         ....+..+               +...+.
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            7899999999863 4899999999999999987553210 00         00000000               011223


Q ss_pred             cCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCc-------eEecccCCceeeEEEEec
Q 021484           85 GKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-------VYSGHRNSQTVKGVNFFG  157 (312)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~v~~~s  157 (312)
                      .+|...|.+++|+|++++|+++.|+.|++||+.+..               +...       .+.+|...  |.+++| +
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~---------------~~~~~~~~~~~~~~~~~~~--v~~~~~-~  235 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSADDLRINLWHLEITD---------------RSFNIVDIKPANMEELTEV--ITAAEF-H  235 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEE---------------EEEEEEECCCSSGGGCCCC--EEEEEE-C
T ss_pred             cCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCC---------------ceeeeeecccccccccCcc--eEEEEE-C
Confidence            679999999999999999999899999999998431               2222       24567655  999999 8


Q ss_pred             CCC-CEEEEeccCceEEEEeccCCee----EEEeecCcc------------ceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484          158 PND-EYVMSGSDCGHLFIWKKKGGKL----VRLMVGDRH------------VVNQLEPHPHIPMFATCGIEKTVKLWAPM  220 (312)
Q Consensus       158 ~~~-~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~------------~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  220 (312)
                      |++ ++|++|+.||.|++||+++++.    +..+..|..            .|.+++|+|++++|++++. +.|++||++
T Consensus       236 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          236 PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETT
T ss_pred             CCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCC
Confidence            998 9999999999999999999886    778888876            8999999999999999998 999999998


Q ss_pred             C-CC-CCCCCCChhhhhh--------------hhccCCCCceeEEecCCceEEEEEecccCc
Q 021484          221 P-TD-FPPLPDNAEKIMK--------------ANKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       221 ~-~~-~~~~~~~~~~~~~--------------~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      . +. +..+..|......              ...+++++.++++++.|+.+++|++.....
T Consensus       315 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          315 MENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             CCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             CCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence            6 44 4555555432211              145788999999999999999999876643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=2.5e-30  Score=217.84  Aligned_cols=238  Identities=12%  Similarity=0.163  Sum_probs=184.5

Q ss_pred             CCccceEEEEEcCC---CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC----C
Q 021484           28 MNSIRLNAIVIDPR---NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----S  100 (312)
Q Consensus        28 ~h~~~v~~~~~~p~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~  100 (312)
                      +|..+|++++|+|+   +...+++++.++.|++||+.+++..         ..+.. .....|...|.+++|+|+    +
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~---------~~~~~-~~~~~~~~~v~~~~~~~~~~~~~   85 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI---------RLLQS-YVDADADENFYTCAWTYDSNTSH   85 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE---------EEEEE-EECSCTTCCEEEEEEEECTTTCC
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE---------Eeeee-ccccCCCCcEEEEEeccCCCCCC
Confidence            58999999999984   4356777777889999999977522         11111 111236788999999999    5


Q ss_pred             CeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEecc
Q 021484          101 ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKK  178 (312)
Q Consensus       101 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd~~  178 (312)
                      .+|+++ .|+.|++||+.++                +.+..+.+|...  |.+++| +| ++++|++++.||.|++||++
T Consensus        86 ~~l~~~~~dg~i~v~d~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~~~~l~s~~~dg~i~iwd~~  146 (366)
T 3k26_A           86 PLLAVAGSRGIIRIINPITM----------------QCIKHYVGHGNA--INELKF-HPRDPNLLLSVSKDHALRLWNIQ  146 (366)
T ss_dssp             EEEEEEETTCEEEEECTTTC----------------CEEEEEESCCSC--EEEEEE-CSSCTTEEEEEETTSCEEEEETT
T ss_pred             CEEEEecCCCEEEEEEchhc----------------eEeeeecCCCCc--EEEEEE-CCCCCCEEEEEeCCCeEEEEEee
Confidence            678886 6999999999887                678888888866  999999 88 89999999999999999999


Q ss_pred             CCeeEEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC-CC---------------------------
Q 021484          179 GGKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PL---------------------------  227 (312)
Q Consensus       179 ~~~~~~~~---~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~---------------------------  227 (312)
                      +++.+..+   ..|...|.+++|+|++++|++++.|+.|++||+++++.. .+                           
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (366)
T 3k26_A          147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST  226 (366)
T ss_dssp             TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred             cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence            99998888   679999999999999999999999999999999865321 00                           


Q ss_pred             -CCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCc------------------------cceeEeecC--CCccC
Q 021484          228 -PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT------------------------LAYRERRYN--AADFE  280 (312)
Q Consensus       228 -~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~------------------------~~~~~~~~~--~~~~~  280 (312)
                       ..|...+.... +.  +.++++++.|+.+++|++.....                        .....+.++  +..+.
T Consensus       227 ~~~~~~~v~~~~-~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~  303 (366)
T 3k26_A          227 RDIHRNYVDCVR-WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA  303 (366)
T ss_dssp             CSSCSSCCCEEE-EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred             ccCCcceEEEEE-Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence             01333332222 22  67999999999999999876532                        001134455  77788


Q ss_pred             CCCCCCeEEEeecCCCC
Q 021484          281 SDEEEGETYLLGFSDSD  297 (312)
Q Consensus       281 ~~~~~~~v~~~~~~~~~  297 (312)
                      +...++.|++++...+.
T Consensus       304 ~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          304 LGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             EECTTSCEEEEECCSSS
T ss_pred             EEecCCcEEEEECCCCC
Confidence            88888899999987764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=6.3e-30  Score=213.51  Aligned_cols=233  Identities=12%  Similarity=0.140  Sum_probs=175.1

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCC--CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   78 (312)
                      |++||+.+........ ...      .+|..+|++++|+|.  + ++|++++.||.|++||+.+++....      ...+
T Consensus        35 i~iw~~~~~~~~~~~~-~~~------~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~------~~~~  100 (351)
T 3f3f_A           35 IKVFKLDKDTSNWELS-DSW------RAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECS------GRRW  100 (351)
T ss_dssp             EEEEEECSSSCCEEEE-EEE------ECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTS------SCSE
T ss_pred             EEEEECCCCCCcceec-cee------ccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCccccc------ccCc
Confidence            5789988654321111 111      238899999999994  6 8999999999999999987642111      0001


Q ss_pred             cccccccCCCccEEEEEEccC--CCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-------------
Q 021484           79 CPRHLIGKNNIHITGLAYSNT--SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-------------  142 (312)
Q Consensus        79 ~~~~~~~~~~~~i~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  142 (312)
                      .....+..|...|.+++|+|+  +.+|+++ .|+.|++||+.++                +....+.             
T Consensus       101 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----------------~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A          101 NKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP----------------SDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSST----------------TCTTCCEEEEEEESCSCCCS
T ss_pred             ceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCCh----------------HHhccccccccccccccccC
Confidence            112223678999999999999  8888886 6999999999876                2222221             


Q ss_pred             cccCCceeeEEEEecCC---CCEEEEeccCceEEEEeccCCee--EEEeecCccceEEEEEcCCC----CeEEEEeCCCc
Q 021484          143 GHRNSQTVKGVNFFGPN---DEYVMSGSDCGHLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHI----PMFATCGIEKT  213 (312)
Q Consensus       143 ~~~~~~~v~~v~~~s~~---~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~p~~----~~l~t~~~d~~  213 (312)
                      .+...  +.+++| +|+   +.++++++.++.+.+|+...++.  +..+.+|...|++++|+|++    ++|++++.||.
T Consensus       165 ~~~~~--~~~~~~-~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~  241 (351)
T 3f3f_A          165 NHLQS--DFCLSW-CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR  241 (351)
T ss_dssp             SCSCC--CEEEEE-CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred             Ccccc--eeEEEe-ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence            34433  899999 886   99999999999998888877765  67778899999999999998    78999999999


Q ss_pred             EEEccCCCCC-----------------------------------------------CCCCCCChhhhhhhhccCCCCce
Q 021484          214 VKLWAPMPTD-----------------------------------------------FPPLPDNAEKIMKANKQGREDHS  246 (312)
Q Consensus       214 i~iwd~~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
                      |++||++...                                               +..+.+|...+ ....+++++.+
T Consensus       242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~s~~~~~  320 (351)
T 3f3f_A          242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV-WSVSWNLTGTI  320 (351)
T ss_dssp             EEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCE-EEEEECSSSCC
T ss_pred             EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE-EEEEEcCCCCE
Confidence            9999987641                                               12233444554 44457888999


Q ss_pred             eEEecCCceEEEEEecccCcc
Q 021484          247 RITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       247 l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      +++++.|+.+++|++......
T Consensus       321 l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          321 LSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             EEEEETTSCEEEEEECTTSCE
T ss_pred             EEEecCCCcEEEEecCcCcch
Confidence            999999999999999876544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-29  Score=214.86  Aligned_cols=224  Identities=11%  Similarity=0.144  Sum_probs=175.6

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCC--CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   78 (312)
                      |++||+.......+...         .+|..+|++++|+|+  + ++|++++.||.|++||+.+++.             
T Consensus        35 i~iw~~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~-------------   91 (379)
T 3jrp_A           35 IKIFEVEGETHKLIDTL---------TGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRW-------------   91 (379)
T ss_dssp             EEEEEEETTEEEEEEEE---------CCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETTEE-------------
T ss_pred             EEEEecCCCcceeeeEe---------cCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCCce-------------
Confidence            57888874433222222         248899999999976  6 8999999999999999998752             


Q ss_pred             cccccccCCCccEEEEEEccC--CCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE
Q 021484           79 CPRHLIGKNNIHITGLAYSNT--SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  155 (312)
Q Consensus        79 ~~~~~~~~~~~~i~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  155 (312)
                      ........|...|.+++|+|+  +.+|+++ .|+.|++||+.+..              ......+..|...  |.+++|
T Consensus        92 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--------------~~~~~~~~~~~~~--v~~~~~  155 (379)
T 3jrp_A           92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG--------------TTSPIIIDAHAIG--VNSASW  155 (379)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS--------------CCCEEEEECCTTC--EEEEEE
T ss_pred             eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC--------------ceeeEEecCCCCc--eEEEEE
Confidence            122223678899999999999  8888886 69999999998751              0233345667755  999999


Q ss_pred             ecC-------------CCCEEEEeccCceEEEEeccCCe----eEEEeecCccceEEEEEcCC---CCeEEEEeCCCcEE
Q 021484          156 FGP-------------NDEYVMSGSDCGHLFIWKKKGGK----LVRLMVGDRHVVNQLEPHPH---IPMFATCGIEKTVK  215 (312)
Q Consensus       156 ~s~-------------~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~p~---~~~l~t~~~d~~i~  215 (312)
                       +|             ++.+|++++.||.|++||+++++    ....+.+|...|.+++|+|+   +.+|++++.||.|+
T Consensus       156 -~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~  234 (379)
T 3jrp_A          156 -APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI  234 (379)
T ss_dssp             -CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred             -cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEE
Confidence             88             69999999999999999998764    45677789999999999999   89999999999999


Q ss_pred             EccCCCCC------CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          216 LWAPMPTD------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       216 iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      +||+....      ......+...+ ....+++++.++++++.|+.+++|++....
T Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          235 IWTQDNEQGPWKKTLLKEEKFPDVL-WRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             EEEESSTTSCCEEEESSSSCCSSCE-EEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             EEeCCCCCccceeeeeccccCCCcE-EEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            99998763      12222244444 445588899999999999999999998653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=6.2e-30  Score=221.42  Aligned_cols=259  Identities=10%  Similarity=0.118  Sum_probs=184.0

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCC------------ccEEEEEE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN------------IHITGLAY   96 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~   96 (312)
                      |...|++++|+|++ ++|++|+.||.|++|++.+++.....    ....+.....+.+|.            ..|.+++|
T Consensus        27 ~~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~----~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~  101 (447)
T 3dw8_B           27 EADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSH----SRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW  101 (447)
T ss_dssp             GGGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CC----CCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred             ccCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCcc----cccceeEecccccccccccccccccccCceEEEEE
Confidence            67899999999998 89999999999999999876521100    001111222336777            88999999


Q ss_pred             ccCC--CeEEEe-cCCcEEEEEcCCCcCCC-----------------CCcCCccccc------CCCCCce-EecccCCce
Q 021484           97 SNTS--ELLISY-NDELVYLFEKNMGLGPS-----------------PLSLSPEDLQ------KREEPQV-YSGHRNSQT  149 (312)
Q Consensus        97 ~~~~--~~l~s~-~d~~i~iwd~~~~~~~~-----------------~~~~~~~~~~------~~~~~~~-~~~~~~~~~  149 (312)
                      +|++  .+|+++ .|+.|++||+.++....                 ...+....+.      .....+. ..+|...  
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--  179 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH--  179 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC--
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc--
Confidence            9998  677775 69999999997632100                 0000000000      0000112 2467755  


Q ss_pred             eeEEEEecCCCCEEEEeccCceEEEEeccC-CeeEEE-------eecCccceEEEEEcCCC-CeEEEEeCCCcEEEccCC
Q 021484          150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRL-------MVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPM  220 (312)
Q Consensus       150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~-------~~~~~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~  220 (312)
                      |.+++| +|++++|++| .|+.|++||+++ ++.+..       +.+|...|.+++|+|++ .+|++++.||+|++||++
T Consensus       180 v~~~~~-~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  257 (447)
T 3dw8_B          180 INSISI-NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR  257 (447)
T ss_dssp             CCEEEE-CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             eEEEEE-cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence            999999 9999999999 799999999984 444442       45789999999999998 899999999999999998


Q ss_pred             CCCC-----CCCCCChhh-----------hhhhhccCCCCceeEEecCCceEEEEEecc-cCccc-e-------------
Q 021484          221 PTDF-----PPLPDNAEK-----------IMKANKQGREDHSRITLTPDVIMHVLRLQR-RQTLA-Y-------------  269 (312)
Q Consensus       221 ~~~~-----~~~~~~~~~-----------~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~-~~~~~-~-------------  269 (312)
                      ++..     ..+..+...           .+....+++++.++++++. +.+++||++. ..... +             
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~  336 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL  336 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence            8764     344445441           3455567889999999999 9999999875 22111 1             


Q ss_pred             -----------eEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          270 -----------RERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       270 -----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                                 ..+.+++..+.+...++.|++||+..+.
T Consensus       337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred             ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence                       3577888888888899999999997764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.4e-30  Score=221.94  Aligned_cols=240  Identities=7%  Similarity=0.143  Sum_probs=180.1

Q ss_pred             CCccceEEEEEcC-CCCcEEEEEeCCCeEEEEEccC---CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021484           28 MNSIRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRK---CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  103 (312)
Q Consensus        28 ~h~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  103 (312)
                      +|..+|++++|+| ++ .+|++|+.||+|++||+.+   +...            . ......|...|.+++|+|++.+|
T Consensus        61 ~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~------------~-~~~~~~h~~~v~~~~~~~~~~~l  126 (437)
T 3gre_A           61 NEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKEIIVGEVY------------S-SSLTYDCSSTVTQITMIPNFDAF  126 (437)
T ss_dssp             TTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHHHHTTCCC------------S-CSEEEECSSCEEEEEECTTSSEE
T ss_pred             CCCCceEEEEECCCCC-CEEEEecCCceEEEeECcccccCccc------------c-eeeeccCCCCEEEEEEeCCCCEE
Confidence            5899999999999 87 8999999999999999986   3210            0 11112589999999999999988


Q ss_pred             EEe-cCCcEEEEEcC---CCcCCCCCcCCcccccCCCCCceEecc--------c--CCceeeEEEE-ecCCCCEEEEecc
Q 021484          104 ISY-NDELVYLFEKN---MGLGPSPLSLSPEDLQKREEPQVYSGH--------R--NSQTVKGVNF-FGPNDEYVMSGSD  168 (312)
Q Consensus       104 ~s~-~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~v~~v~~-~s~~~~~l~~~~~  168 (312)
                      +++ .|+.|++||+.   .+                +....+.++        .  ....+.++.+ .++++++|++++.
T Consensus       127 ~s~s~dg~i~vwd~~~~~~~----------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (437)
T 3gre_A          127 AVSSKDGQIIVLKVNHYQQE----------------SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN  190 (437)
T ss_dssp             EEEETTSEEEEEEEEEEEET----------------TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred             EEEeCCCEEEEEEeccccCC----------------ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence            886 59999999995   33                222222222        1  1223566653 1678999999999


Q ss_pred             CceEEEEeccCCeeEEEeec--CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCC-CChhhhhhhh---ccC
Q 021484          169 CGHLFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP-DNAEKIMKAN---KQG  241 (312)
Q Consensus       169 dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~---~~~  241 (312)
                      ||.|++||+++++++..+..  |...|++++|+|++++|++++.||+|++||++.+.. ..+. .+...+....   .++
T Consensus       191 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s  270 (437)
T 3gre_A          191 LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYG  270 (437)
T ss_dssp             TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTC
T ss_pred             CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccC
Confidence            99999999999999999988  889999999999999999999999999999998764 3332 3444443332   244


Q ss_pred             CCCceeEEecCCceEEEEEecccCcccee------------------------------------EeecCCCccCCCCCC
Q 021484          242 REDHSRITLTPDVIMHVLRLQRRQTLAYR------------------------------------ERRYNAADFESDEEE  285 (312)
Q Consensus       242 ~~~~~l~s~~~d~~i~i~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~  285 (312)
                      +++.++++++.|+.+++||+.........                                    .+. +...+.+...+
T Consensus       271 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d  349 (437)
T 3gre_A          271 KNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEAT  349 (437)
T ss_dssp             TTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGG
T ss_pred             CCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCC
Confidence            56789999999999999998754321111                                    222 23456677778


Q ss_pred             CeEEEeecCCCCC
Q 021484          286 GETYLLGFSDSDA  298 (312)
Q Consensus       286 ~~v~~~~~~~~~~  298 (312)
                      +.|.+||+..+..
T Consensus       350 ~~i~~wd~~~~~~  362 (437)
T 3gre_A          350 SSIVMFSLNELSS  362 (437)
T ss_dssp             TEEEEEETTCGGG
T ss_pred             CeEEEEECCCccc
Confidence            8999999877653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=7.1e-30  Score=236.93  Aligned_cols=235  Identities=17%  Similarity=0.241  Sum_probs=194.6

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      +|..+|++++|+|++ .+|++++.||.|++||+.+++.              ...+ ..|...|.+++|+|++++|+++ 
T Consensus        11 ~h~~~v~~i~~sp~~-~~la~~~~~g~v~iwd~~~~~~--------------~~~~-~~~~~~v~~~~~s~~~~~l~~~~   74 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTE-PWVLTTLYSGRVEIWNYETQVE--------------VRSI-QVTETPVRAGKFIARKNWIIVGS   74 (814)
T ss_dssp             EECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE--------------EEEE-ECCSSCEEEEEEEGGGTEEEEEE
T ss_pred             cCCCceEEEEECCCC-CEEEEEeCCCEEEEEECCCCce--------------EEEE-ecCCCcEEEEEEeCCCCEEEEEe
Confidence            488899999999999 7999999999999999998862              2222 6789999999999999988886 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEEE
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRL  185 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~  185 (312)
                      .|+.|++||+.++                +....+.+|...  |.+++| +|++++|++++.||.|++||+.++ .....
T Consensus        75 ~dg~i~vw~~~~~----------------~~~~~~~~~~~~--v~~~~~-s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  135 (814)
T 3mkq_A           75 DDFRIRVFNYNTG----------------EKVVDFEAHPDY--IRSIAV-HPTKPYVLSGSDDLTVKLWNWENNWALEQT  135 (814)
T ss_dssp             TTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred             CCCeEEEEECCCC----------------cEEEEEecCCCC--EEEEEE-eCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence            5999999999887                777888888866  999999 999999999999999999999987 77788


Q ss_pred             eecCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCC--CCceeEEecCCceEEEEEe
Q 021484          186 MVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR--EDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~i~i~~~  261 (312)
                      +.+|...|.+++|+| ++..+++++.||+|++||+.+... ..+..+....+....+.+  ++.++++++.|+.+++|++
T Consensus       136 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~  215 (814)
T 3mkq_A          136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY  215 (814)
T ss_dssp             EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred             EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            889999999999999 888999999999999999987653 333333323334445666  8889999999999999997


Q ss_pred             cccCc----------cceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          262 QRRQT----------LAYRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       262 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      .....          .....+.|++..+.+...++.+.+++...+.
T Consensus       216 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred             CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            65421          1122567777778888888889999987653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.6e-29  Score=217.48  Aligned_cols=251  Identities=14%  Similarity=0.210  Sum_probs=195.0

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+|||+.+.+...++...         +|...|++++|+|++ ++|++|+.||+|++||+.++++              .
T Consensus       127 V~lWd~~tg~~~~~~~~~---------~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~--------------~  182 (420)
T 4gga_A          127 VYLWSASSGDILQLLQME---------QPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKR--------------L  182 (420)
T ss_dssp             EEEEETTTCCEEEEEECC---------STTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE--------------E
T ss_pred             EEEEECCCCCEEEEEEec---------CCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcE--------------E
Confidence            689999988766666542         377889999999999 8999999999999999998873              2


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ... .+|...+.+++++  +.+|+++ .|+.+++||.....               ..+..+.+|...  +..+.| +++
T Consensus       183 ~~~-~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~---------------~~~~~~~~h~~~--~~~~~~-~~~  241 (420)
T 4gga_A          183 RNM-TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE---------------HHVATLSGHSQE--VCGLRW-APD  241 (420)
T ss_dssp             EEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS---------------CEEEEEECCSSC--EEEEEE-CTT
T ss_pred             EEE-eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc---------------eeeEEecccccc--eeeeee-cCC
Confidence            222 7889999988775  5688886 59999999987652               455678888866  999998 999


Q ss_pred             CCEEEEeccCceEEEEeccCCe----eEEEeecCccceEEEEEcCCCCe-EEEE--eCCCcEEEccCCCCCCCCCCCChh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGK----LVRLMVGDRHVVNQLEPHPHIPM-FATC--GIEKTVKLWAPMPTDFPPLPDNAE  232 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~p~~~~-l~t~--~~d~~i~iwd~~~~~~~~~~~~~~  232 (312)
                      ++++++++.|+.+++|+..+++    .+.....|...|.+++|+|.+.. ++++  +.|++|++||+.++..........
T Consensus       242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~  321 (420)
T 4gga_A          242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS  321 (420)
T ss_dssp             SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS
T ss_pred             CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc
Confidence            9999999999999999998765    35666788999999999997765 5543  479999999999876422222333


Q ss_pred             hhhhhhccCCCCceeEEe--cCCceEEEEEecccCcc---------c-eeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          233 KIMKANKQGREDHSRITL--TPDVIMHVLRLQRRQTL---------A-YRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       233 ~~~~~~~~~~~~~~l~s~--~~d~~i~i~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      .+.... +.+++..++++  ..|+.|++|++.+....         + ...++|++..+.+...++.|.+|++.+.+
T Consensus       322 ~v~~~~-~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          322 QVCSIL-WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             CEEEEE-EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             ceeeee-ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            343333 55666666554  47899999998654322         2 23778899999999999999999987654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=3.2e-29  Score=209.11  Aligned_cols=235  Identities=14%  Similarity=0.203  Sum_probs=171.5

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCC--------
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD--------   72 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------   72 (312)
                      |+|||+++.+..........      .+|...|.+++|+|++ ++|++++.|+.|++|+.............        
T Consensus        63 i~vWd~~~~~~~~~~~~~~l------~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  135 (340)
T 4aow_A           63 IIMWKLTRDETNYGIPQRAL------RGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA  135 (340)
T ss_dssp             EEEEEECCSSSCSEEEEEEE------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEEEECCCCCcccceeeEEE------eCCCCCEEEEEECCCC-CEEEEEcccccceEEeecccceeeeecCCCCceeEEE
Confidence            68999987654333222222      2589999999999999 89999999999999999876543211100        


Q ss_pred             --------------CCccccccc------ccccCCCccEEEEEEccCCC--eEEEe-cCCcEEEEEcCCCcCCCCCcCCc
Q 021484           73 --------------TPVDTFCPR------HLIGKNNIHITGLAYSNTSE--LLISY-NDELVYLFEKNMGLGPSPLSLSP  129 (312)
Q Consensus        73 --------------~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~  129 (312)
                                    ..+..+...      ....+|...+..++|++++.  +++++ .|+.|++||+.++          
T Consensus       136 ~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~----------  205 (340)
T 4aow_A          136 FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC----------  205 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT----------
T ss_pred             EeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC----------
Confidence                          000000000      11235667777888877653  55554 4788888888776          


Q ss_pred             ccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021484          130 EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~  209 (312)
                            +....+.+|...  |.+++| +|++++|++|+.||.|++||+++.+++..+..+ ..|..+.|+|++.++ +++
T Consensus       206 ------~~~~~~~~h~~~--v~~~~~-s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~  274 (340)
T 4aow_A          206 ------KLKTNHIGHTGY--LNTVTV-SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL-CAA  274 (340)
T ss_dssp             ------EEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE-EEE
T ss_pred             ------ceeeEecCCCCc--EEEEEE-CCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee-ecc
Confidence                  677888888866  999999 999999999999999999999999999888754 689999999987655 556


Q ss_pred             CCCcEEEccCCCCCC----------CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          210 IEKTVKLWAPMPTDF----------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       210 ~d~~i~iwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      .|+.|++||+++...          .....|...+ ....+++++.+|++++.|+.|++|++.++
T Consensus       275 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          275 TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC-TSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             ETTEEEEEETTTTEEEEEECCC-------CCCCCE-EEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             CCCEEEEEECCCCeEEEeccccceeeeccCCCCCE-EEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence            799999999986531          1122344555 34457889999999999999999999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=6e-30  Score=218.14  Aligned_cols=203  Identities=13%  Similarity=0.138  Sum_probs=164.5

Q ss_pred             ccceEEEEEc----CCCCcE-EEEEeCCCeEEEEEccC------CeecCCCCCCCCccccccc-cc------ccCCCccE
Q 021484           30 SIRLNAIVID----PRNPNY-FAVGGSDEYARVYDIRK------CHWYSPISSDTPVDTFCPR-HL------IGKNNIHI   91 (312)
Q Consensus        30 ~~~v~~~~~~----p~~~~~-l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~i   91 (312)
                      ...|.+++|+    |++ .+ |++++.||.|++||+.+      ++...          +.+. .+      ...|...|
T Consensus       121 ~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i  189 (397)
T 1sq9_A          121 KHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTLN----------WSPTLELQGTVESPMTPSQFA  189 (397)
T ss_dssp             GSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC----------CCCEEEEEEEECCSSSSCCCC
T ss_pred             CCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccccccceee----------ccCcceeeeeeccccCCCCCc
Confidence            5889999999    988 67 99999999999999997      44211          0111 11      14578899


Q ss_pred             EEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec---c---cCCceeeEEEEecCCCCEEE
Q 021484           92 TGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG---H---RNSQTVKGVNFFGPNDEYVM  164 (312)
Q Consensus        92 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~v~~v~~~s~~~~~l~  164 (312)
                      .+++|+|++ +++++ .|+.|++||++++                +.+..+..   |   ...  +.+++| +|++++|+
T Consensus       190 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~----------------~~~~~~~~~~~h~~~~~~--i~~i~~-~~~~~~l~  249 (397)
T 1sq9_A          190 TSVDISERG-LIATGFNNGTVQISELSTL----------------RPLYNFESQHSMINNSNS--IRSVKF-SPQGSLLA  249 (397)
T ss_dssp             CEEEECTTS-EEEEECTTSEEEEEETTTT----------------EEEEEEECCC---CCCCC--EEEEEE-CSSTTEEE
T ss_pred             eEEEECCCc-eEEEEeCCCcEEEEECCCC----------------ceeEEEeccccccccCCc--cceEEE-CCCCCEEE
Confidence            999999999 88887 5999999999887                67778887   7   655  999999 99999999


Q ss_pred             EeccC---ceEEEEeccCCeeEEEeec-------------CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCC
Q 021484          165 SGSDC---GHLFIWKKKGGKLVRLMVG-------------DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL  227 (312)
Q Consensus       165 ~~~~d---g~v~iwd~~~~~~~~~~~~-------------~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~  227 (312)
                      +++.|   |.|++||+++++++..+..             |...|.+++|+|++++|++++.|+.|++||+.+++. ..+
T Consensus       250 ~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (397)
T 1sq9_A          250 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL  329 (397)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEE
Confidence            99999   9999999999999999988             999999999999999999999999999999987753 333


Q ss_pred             C------CC---------------hhhhhhhhccCCCC----------ceeEEecCCceEEEEEeccc
Q 021484          228 P------DN---------------AEKIMKANKQGRED----------HSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       228 ~------~~---------------~~~~~~~~~~~~~~----------~~l~s~~~d~~i~i~~~~~~  264 (312)
                      .      .|               ...+ ....+.+++          .++++++.|+.|++|++..+
T Consensus       330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v-~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          330 NMHCDDIEIEEDILAVDEHGDSLAEPGV-FDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             ECCGGGCSSGGGCCCBCTTSCBCSSCCE-EEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ecccCcccchhhhhccccccccccCCce-eEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            3      34               4444 344466766          79999999999999998754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=4.6e-30  Score=215.54  Aligned_cols=239  Identities=10%  Similarity=0.080  Sum_probs=187.1

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC---CC
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT---SE  101 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~  101 (312)
                      +|..+|++++|+|++..++++|+.   |+.|++||+.+++.              .......|...|.+++|+|+   +.
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~   81 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL--------------KLLREIEKAKPIKCGTFGATSLQQR   81 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE--------------EEEEEEEESSCEEEEECTTCCTTTC
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc--------------cceeeecccCcEEEEEEcCCCCCCc
Confidence            388999999999998667777776   99999999998762              22222468899999999998   68


Q ss_pred             eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCC-CCceEecccCCceeeEEEEe-----cCCCCEEEEeccCceEEE
Q 021484          102 LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTVKGVNFF-----GPNDEYVMSGSDCGHLFI  174 (312)
Q Consensus       102 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~-----s~~~~~l~~~~~dg~v~i  174 (312)
                      +|+++ .|+.|++||+.++                + ....+.+|...  |.+++|.     ++++++|++++.||.|++
T Consensus        82 ~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~~--v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v  143 (357)
T 3i2n_A           82 YLATGDFGGNLHIWNLEAP----------------EMPVYSVKGHKEI--INAIDGIGGLGIGEGAPEIVTGSRDGTVKV  143 (357)
T ss_dssp             CEEEEETTSCEEEECTTSC----------------SSCSEEECCCSSC--EEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred             eEEEecCCCeEEEEeCCCC----------------CccEEEEEecccc--eEEEeeccccccCCCccEEEEEeCCCeEEE
Confidence            88886 5999999999887                4 77888888866  9999552     688999999999999999


Q ss_pred             EeccCCe-eEEEeecCcc----ceEEEE----EcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCC---
Q 021484          175 WKKKGGK-LVRLMVGDRH----VVNQLE----PHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR---  242 (312)
Q Consensus       175 wd~~~~~-~~~~~~~~~~----~v~~~~----~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---  242 (312)
                      ||+++++ ++..+..|.+    .+.+++    |+|+++++++++.|+.|++||+++++......+...+ ....+++   
T Consensus       144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v-~~~~~~~~~~  222 (357)
T 3i2n_A          144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGV-CSLEFDRKDI  222 (357)
T ss_dssp             ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCE-EEEEESCSSS
T ss_pred             EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCce-EEEEcCCCCC
Confidence            9999886 6777766554    788888    7899999999999999999999988754333444444 4445666   


Q ss_pred             CCceeEEecCCceEEEEEecccCcc--------------ce-eEeecCCC-ccCCCCCCCeEEEeecCCCCCC
Q 021484          243 EDHSRITLTPDVIMHVLRLQRRQTL--------------AY-RERRYNAA-DFESDEEEGETYLLGFSDSDAS  299 (312)
Q Consensus       243 ~~~~l~s~~~d~~i~i~~~~~~~~~--------------~~-~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~  299 (312)
                      ++.++++++.|+.+++|+++.....              +. ..+.|+.. .+.+...++.+.+++...+...
T Consensus       223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  295 (357)
T 3i2n_A          223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR  295 (357)
T ss_dssp             SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred             CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence            7899999999999999998654322              11 25566666 6777888889999998765433

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.1e-29  Score=210.95  Aligned_cols=223  Identities=9%  Similarity=-0.030  Sum_probs=165.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+.             ...|.++.|+|.    +++++.|++|++|+..............     ..
T Consensus        60 v~iwd~~~~~~~~~~~-------------~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~-----~~  117 (343)
T 3lrv_A           60 LHFTQLKDSKTITTIT-------------TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNK-----VL  117 (343)
T ss_dssp             EEEEEESSSSCEEEEE-------------EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCC-----EE
T ss_pred             EEEEECCCCcEEEEEe-------------cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcc-----ee
Confidence            5789998776544443             125778888885    8999999999999877432111111111     11


Q ss_pred             cccccCCCccEEEEEEcc--CCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec
Q 021484           81 RHLIGKNNIHITGLAYSN--TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  157 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s  157 (312)
                      ......|...|.+++|+|  ++++++++ .|+.|++||+.++                +....+..+.. ..+.+++| +
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~----------------~~~~~~~~~~~-~~i~~~~~-~  179 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD----------------SQYIVHSAKSD-VEYSSGVL-H  179 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS----------------CEEEEECCCSS-CCCCEEEE-C
T ss_pred             EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC----------------cEEEEEecCCC-CceEEEEE-C
Confidence            122246678899999999  99999986 5999999999887                45444433332 23999999 9


Q ss_pred             CCCCEEEEeccCceEEEEeccCCeeE-EEeec-CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCC---Ch
Q 021484          158 PNDEYVMSGSDCGHLFIWKKKGGKLV-RLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD---NA  231 (312)
Q Consensus       158 ~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~-~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~---~~  231 (312)
                      |++++|++|+.||.|++||+++++.+ ..+.. |..+|++++|+|++.+|++++ |++|++||+++... ..+..   +.
T Consensus       180 pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~  258 (343)
T 3lrv_A          180 KDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPE  258 (343)
T ss_dssp             TTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC--
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccccc
Confidence            99999999999999999999999887 78887 999999999999999999999 55999999998764 33332   22


Q ss_pred             hhhh-hhhccCCCCceeEEecC-CceEEEEEeccc
Q 021484          232 EKIM-KANKQGREDHSRITLTP-DVIMHVLRLQRR  264 (312)
Q Consensus       232 ~~~~-~~~~~~~~~~~l~s~~~-d~~i~i~~~~~~  264 (312)
                      ..+- ....+++++.++++++. |+.+++|++...
T Consensus       259 ~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          259 FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             ---CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence            2221 13557888999999888 999999998654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-29  Score=215.89  Aligned_cols=214  Identities=12%  Similarity=0.137  Sum_probs=174.6

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCC----------------cccc-------------
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP----------------VDTF-------------   78 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~~-------------   78 (312)
                      +|..+|.+++|+|++ ++|++++.|+.|++||+.+++..........                +...             
T Consensus       147 ~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (425)
T 1r5m_A          147 FHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP  225 (425)
T ss_dssp             CCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECG
T ss_pred             CCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC
Confidence            378899999999998 7999999999999999988876543322111                1000             


Q ss_pred             ------------cccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc
Q 021484           79 ------------CPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR  145 (312)
Q Consensus        79 ------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (312)
                                  .....+..|...|.+++|+|++++|+++ .|+.|++||+.++                +....+.+|.
T Consensus       226 ~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------~~~~~~~~~~  289 (425)
T 1r5m_A          226 KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG----------------NSQNCFYGHS  289 (425)
T ss_dssp             GGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB----------------SCSEEECCCS
T ss_pred             CCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC----------------ccceEecCCC
Confidence                        0112235788999999999999988886 5999999999887                6778888887


Q ss_pred             CCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--
Q 021484          146 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--  223 (312)
Q Consensus       146 ~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--  223 (312)
                      ..  +.+++| +|++ ++++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|++||+.+..  
T Consensus       290 ~~--i~~~~~-~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~  365 (425)
T 1r5m_A          290 QS--IVSASW-VGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSK  365 (425)
T ss_dssp             SC--EEEEEE-ETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-
T ss_pred             cc--EEEEEE-CCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccc
Confidence            66  999999 8888 99999999999999999999999999999999999999999999999999999999987654  


Q ss_pred             -------------------CCCCCCChhh-hhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          224 -------------------FPPLPDNAEK-IMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       224 -------------------~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                                         +..+..+... .+....+++++.++++++.|+.+++|++.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          366 SRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             -------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             eeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence                               2344445442 33455578888899999999999999874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2.3e-29  Score=217.06  Aligned_cols=251  Identities=18%  Similarity=0.219  Sum_probs=188.0

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~  106 (312)
                      +|...|++++|+|+++.+|++++.||.|++|++.+......     +.........+.+|...|.+++|+|++. +|+++
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            38899999999998558999999999999999986321000     0000122223368899999999999998 88887


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEeccCC---e
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGG---K  181 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd~~~~---~  181 (312)
                       .||.|++|++..+...         .........+.+|...  |.+++| +| ++.+|++++.||.|++||++++   +
T Consensus       201 ~~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~h~~~--v~~v~~-~p~~~~~l~s~~~dg~i~i~d~~~~~~~~  268 (430)
T 2xyi_A          201 SDDHTICLWDINATPKE---------HRVIDAKNIFTGHTAV--VEDVAW-HLLHESLFGSVADDQKLMIWDTRNNNTSK  268 (430)
T ss_dssp             CTTSCEEEEETTSCCBG---------GGEEECSEEECCCSSC--EEEEEE-CSSCTTEEEEEETTSEEEEEETTCSCSSS
T ss_pred             eCCCeEEEEeCCCCCCC---------CceeccceeecCCCCC--EeeeEE-eCCCCCEEEEEeCCCeEEEEECCCCCCCc
Confidence             5999999999874100         0000124556677765  999999 77 7889999999999999999987   5


Q ss_pred             eEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCC-ceeEEecCCceEE
Q 021484          182 LVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGRED-HSRITLTPDVIMH  257 (312)
Q Consensus       182 ~~~~~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~  257 (312)
                      ++..+..|...|++++|+|+++ ++++++.||+|++||++...  +..+..|...+... .+++++ .++++++.|+.++
T Consensus       269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i-~~sp~~~~~l~s~~~d~~i~  347 (430)
T 2xyi_A          269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV-QWSPHNETILASSGTDRRLH  347 (430)
T ss_dssp             CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEE-EECSSCTTEEEEEETTSCCE
T ss_pred             ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEE-EECCCCCCEEEEEeCCCcEE
Confidence            7778889999999999999998 58899999999999998743  45555566666444 466655 5789999999999


Q ss_pred             EEEecccC-------------c-----------cceeEeecCCC-ccCCCCCCCeEEEeecCCC
Q 021484          258 VLRLQRRQ-------------T-----------LAYRERRYNAA-DFESDEEEGETYLLGFSDS  296 (312)
Q Consensus       258 i~~~~~~~-------------~-----------~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~  296 (312)
                      +|++....             .           .....+.++.. .+.+...++.|.+|++..+
T Consensus       348 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            99997621             0           11125566666 6777778888999987654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.1e-29  Score=209.88  Aligned_cols=202  Identities=11%  Similarity=0.090  Sum_probs=168.1

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .+|..+|++++|+|++ ++|++++.||.|++||+.+++.              ... +..|...|.+++|+|++++|+++
T Consensus        29 ~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~--------------~~~-~~~h~~~v~~~~~~~~~~~l~s~   92 (369)
T 3zwl_B           29 TGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLNGER--------------LGT-LDGHTGTIWSIDVDCFTKYCVTG   92 (369)
T ss_dssp             ECCSSCEEEEEECTTS-CEEEEEESSSCEEEEETTTCCE--------------EEE-ECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEeeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCchh--------------hhh-hhhcCCcEEEEEEcCCCCEEEEE
Confidence            3699999999999998 8999999999999999998762              222 26789999999999999988886


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC-----ceEEEEeccCC
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-----GHLFIWKKKGG  180 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d-----g~v~iwd~~~~  180 (312)
                       .|+.|++||+.++                +....+. +...  +.+++| +|++++|++++.+     +.|++||+..+
T Consensus        93 ~~dg~i~iwd~~~~----------------~~~~~~~-~~~~--v~~~~~-~~~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B           93 SADYSIKLWDVSNG----------------QCVATWK-SPVP--VKRVEF-SPCGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             ETTTEEEEEETTTC----------------CEEEEEE-CSSC--EEEEEE-CTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             eCCCeEEEEECCCC----------------cEEEEee-cCCC--eEEEEE-ccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence             5999999999887                5666666 5544  999999 9999999999998     99999998765


Q ss_pred             e-----------eEEEeecCcc--ceEEEEEcCCCCeEEEEeCCCcEEEccCCC-CC-CCCCCCChhhhhhhhccCCCCc
Q 021484          181 K-----------LVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMP-TD-FPPLPDNAEKIMKANKQGREDH  245 (312)
Q Consensus       181 ~-----------~~~~~~~~~~--~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~-~~-~~~~~~~~~~~~~~~~~~~~~~  245 (312)
                      .           .+..+..|..  .+.+++|+|++++|++++.||.|++||+++ .. ...+..+...+ ....+++++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-~~~~~~~~~~  231 (369)
T 3zwl_B          153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI-SDMQFSPDLT  231 (369)
T ss_dssp             TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE-EEEEECTTSS
T ss_pred             ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce-eEEEECCCCC
Confidence            3           3445556665  899999999999999999999999999987 33 34444455555 4445788899


Q ss_pred             eeEEecCCceEEEEEecccC
Q 021484          246 SRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       246 ~l~s~~~d~~i~i~~~~~~~  265 (312)
                      ++++++.|+.+++||+....
T Consensus       232 ~l~~~~~d~~i~v~d~~~~~  251 (369)
T 3zwl_B          232 YFITSSRDTNSFLVDVSTLQ  251 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCC
T ss_pred             EEEEecCCceEEEEECCCCc
Confidence            99999999999999987653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=6.4e-29  Score=214.35  Aligned_cols=212  Identities=14%  Similarity=0.227  Sum_probs=167.3

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEe
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~  106 (312)
                      +|...|++++|+|++..+|++|+.||.|++|++.++...        .........+..|...|.+++|+| ++.+|+++
T Consensus       179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--------~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~  250 (430)
T 2xyi_A          179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE--------HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV  250 (430)
T ss_dssp             CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBG--------GGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCC--------CceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence            588899999999998459999999999999999874310        000111223368899999999999 55688776


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCC-EEEEeccCceEEEEeccC-CeeE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKG-GKLV  183 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~-~~~~  183 (312)
                       .|+.|++||+++..             ..+....+..|...  |++++| +|+++ +|++|+.||.|++||+++ ++++
T Consensus       251 ~~dg~i~i~d~~~~~-------------~~~~~~~~~~~~~~--v~~i~~-~p~~~~~l~tg~~dg~v~vwd~~~~~~~~  314 (430)
T 2xyi_A          251 ADDQKLMIWDTRNNN-------------TSKPSHTVDAHTAE--VNCLSF-NPYSEFILATGSADKTVALWDLRNLKLKL  314 (430)
T ss_dssp             ETTSEEEEEETTCSC-------------SSSCSEEEECCSSC--EEEEEE-CSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred             eCCCeEEEEECCCCC-------------CCcceeEeecCCCC--eEEEEe-CCCCCCEEEEEeCCCeEEEEeCCCCCCCe
Confidence             59999999998751             01355667778766  999999 88887 688999999999999997 5678


Q ss_pred             EEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCC---------------CCCCCCCChhhhhhhhccCCCCc-e
Q 021484          184 RLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPT---------------DFPPLPDNAEKIMKANKQGREDH-S  246 (312)
Q Consensus       184 ~~~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~-~  246 (312)
                      ..+..|...|.+++|+|+++ +|++++.|+.|++||+...               .+..+.+|...+.. ..+++++. +
T Consensus       315 ~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~p~~~~~  393 (430)
T 2xyi_A          315 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD-FSWNPNEPWI  393 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEE-EEECSSSTTE
T ss_pred             EEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceE-EEECCCCCCE
Confidence            88999999999999999996 5999999999999999862               12334455555544 44677666 8


Q ss_pred             eEEecCCceEEEEEeccc
Q 021484          247 RITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       247 l~s~~~d~~i~i~~~~~~  264 (312)
                      +++++.|+.|++|++...
T Consensus       394 l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          394 ICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEEEETTSEEEEEEECHH
T ss_pred             EEEEECCCCEEEeEcccc
Confidence            999999999999998754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.2e-28  Score=212.89  Aligned_cols=243  Identities=16%  Similarity=0.257  Sum_probs=185.5

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+.           +|..+|.+++|  ++ ++|++|+.||.|++||+.++++              .
T Consensus       155 i~iwd~~~~~~~~~~~-----------~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~~~--------------~  206 (435)
T 1p22_A          155 IKIWDKNTLECKRILT-----------GHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNTGEM--------------L  206 (435)
T ss_dssp             EEEEESSSCCEEEEEC-----------CCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSSCCE--------------E
T ss_pred             EEEEeCCCCeEEEEEc-----------CCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCCCcE--------------E
Confidence            5788887765443332           48889999999  45 7999999999999999998862              2


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCC---ceEecccCCceeeEEEEe
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEP---QVYSGHRNSQTVKGVNFF  156 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~v~~~  156 (312)
                      ..+ ..|...|.+++|++  .+++++ .|+.|++||+.++                ...   ..+.+|...  |.+++| 
T Consensus       207 ~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~----------------~~~~~~~~~~~~~~~--v~~~~~-  264 (435)
T 1p22_A          207 NTL-IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASP----------------TDITLRRVLVGHRAA--VNVVDF-  264 (435)
T ss_dssp             EEE-CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSS----------------SCCEEEEEECCCSSC--EEEEEE-
T ss_pred             EEE-cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCC----------------CCceeeeEecCCCCc--EEEEEe-
Confidence            222 67899999999974  477775 6999999999876                333   566677765  999987 


Q ss_pred             cCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhh
Q 021484          157 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIM  235 (312)
Q Consensus       157 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~  235 (312)
                        ++++|++|+.||.|++||+++++.+..+.+|...|.++.|  ++.++++++.||+|++||++++.. ..+.+|...+.
T Consensus       265 --~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~  340 (435)
T 1p22_A          265 --DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR  340 (435)
T ss_dssp             --ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             --CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEE
Confidence              6889999999999999999999999999999999999999  568999999999999999998763 55666666664


Q ss_pred             hhhccCCCCceeEEecCCceEEEEEecccCc--------cce---------eEeecCCCccCCCCCCCeEEEeecCCCCC
Q 021484          236 KANKQGREDHSRITLTPDVIMHVLRLQRRQT--------LAY---------RERRYNAADFESDEEEGETYLLGFSDSDA  298 (312)
Q Consensus       236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  298 (312)
                      ... +  ++.++++++.|+.+++||+.....        ...         .....++..+.+...++.|.++++.++..
T Consensus       341 ~~~-~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          341 CIR-F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             EEE-C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC------
T ss_pred             EEE-e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCC
Confidence            433 2  678999999999999999865431        000         01122556677788899999999977654


Q ss_pred             CC
Q 021484          299 SS  300 (312)
Q Consensus       299 ~~  300 (312)
                      ..
T Consensus       418 ~~  419 (435)
T 1p22_A          418 AQ  419 (435)
T ss_dssp             --
T ss_pred             cc
Confidence            33

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=2.6e-28  Score=201.70  Aligned_cols=237  Identities=16%  Similarity=0.268  Sum_probs=179.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCC-cccc-
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP-VDTF-   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~-   78 (312)
                      |+|||+.+.+..+++...         +|...|++++|+|++ ++|++|+.||+|++|++.++++......... +..+ 
T Consensus        47 V~iWd~~tg~~~~~~~~~---------~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~  116 (318)
T 4ggc_A           47 VYLWSASSGDILQLLQME---------QPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS  116 (318)
T ss_dssp             EEEEETTTCCEEEEEECC---------STTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEEEECCCCCEEEEEEec---------CCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCceeEEEecCccceEEEee
Confidence            689999988766666542         378889999999999 8999999999999999998886543321110 0000 


Q ss_pred             ------------------------cccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCccccc
Q 021484           79 ------------------------CPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQ  133 (312)
Q Consensus        79 ------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  133 (312)
                                              .....+.+|...+..+++++++++|+++ .|+.|++||+.++...           
T Consensus       117 ~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----------  185 (318)
T 4ggc_A          117 WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-----------  185 (318)
T ss_dssp             EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB-----------
T ss_pred             cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc-----------
Confidence                                    0112235788899999999999999886 5999999999875200           


Q ss_pred             CCCCCceEecccCCceeeEEEEecCCCCE---EEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe-
Q 021484          134 KREEPQVYSGHRNSQTVKGVNFFGPNDEY---VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-  209 (312)
Q Consensus       134 ~~~~~~~~~~~~~~~~v~~v~~~s~~~~~---l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~-  209 (312)
                       .........+...  |..+++ .+.+..   +++++.++.|++||........... +...+..+.|+|.+..+++++ 
T Consensus       186 -~~~~~~~~~~~~~--v~~~~~-~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg  260 (318)
T 4ggc_A          186 -WVPLQTFTQHQGA--VKAVAW-CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHG  260 (318)
T ss_dssp             -SCCSEEECCCCSC--EEEEEE-CTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEEC
T ss_pred             -ccceeeecccCCc--eEEEEe-cCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEE
Confidence             0123334445544  899998 666543   3467889999999999887766554 667899999999999877665 


Q ss_pred             -CCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          210 -IEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       210 -~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                       .|+.|++||+++++ +..+.+|...+.. ..+++++.+|++++.|+.|++||+...
T Consensus       261 ~~d~~i~iwd~~~~~~~~~l~gH~~~V~~-l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          261 FAQNQLVIWKYPTMAKVAELKGHTSRVLS-LTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCSSCEEE-EEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCCCCEEE-EEEcCCCCEEEEEecCCeEEEEECCCC
Confidence             79999999999877 4667788877754 457889999999999999999998643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-29  Score=231.19  Aligned_cols=236  Identities=14%  Similarity=0.153  Sum_probs=190.8

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC--CCeEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLI  104 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~  104 (312)
                      .+|.++|++++|+|++ .+|++|+.||.|++||+.++..             .....+.+|...|++++|+|+  +.+|+
T Consensus         6 ~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~~~-------------~~~~~l~~h~~~V~~l~~s~~~~~~~l~   71 (753)
T 3jro_A            6 NAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETH-------------KLIDTLTGHEGPVWRVDWAHPKFGTILA   71 (753)
T ss_dssp             --CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETTEE-------------EEEEEECCCSSCEEEEEECCTTSCSEEE
T ss_pred             ccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCCCC-------------ccceeccCCcCceEEEEecCCCCCCEEE
Confidence            4699999999999998 7999999999999999984431             122223789999999999988  88888


Q ss_pred             Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCC--CCceEecccCCceeeEEEEecCC--CCEEEEeccCceEEEEeccC
Q 021484          105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKRE--EPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKG  179 (312)
Q Consensus       105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~v~~~s~~--~~~l~~~~~dg~v~iwd~~~  179 (312)
                      ++ .||.|++||+.++                +  ....+.+|...  |.+++| +|+  ++++++|+.||.|++||+++
T Consensus        72 s~s~Dg~I~vwd~~~~----------------~~~~~~~~~~h~~~--V~~v~~-sp~~~~~~l~sgs~dg~I~vwdl~~  132 (753)
T 3jro_A           72 SCSYDGKVLIWKEENG----------------RWSQIAVHAVHSAS--VNSVQW-APHEYGPLLLVASSDGKVSVVEFKE  132 (753)
T ss_dssp             EEETTSCEEEEEEETT----------------EEEEEEEECCCSSC--EEEEEE-CCGGGCSEEEEEETTSEEEEEECCS
T ss_pred             EEeCCCeEEEEECCCC----------------cccccccccCCCCC--eEEEEE-CCCCCCCEEEEEeCCCcEEEEEeec
Confidence            86 5999999999876                3  55666777766  999999 898  99999999999999999987


Q ss_pred             C--eeEEEeecCccceEEEEEcC-------------CCCeEEEEeCCCcEEEccCCCCC-----CCCCCCChhhhhhhhc
Q 021484          180 G--KLVRLMVGDRHVVNQLEPHP-------------HIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNAEKIMKANK  239 (312)
Q Consensus       180 ~--~~~~~~~~~~~~v~~~~~~p-------------~~~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~  239 (312)
                      +  .....+.+|...|.+++|+|             ++.++++++.||+|++||+++..     ...+.+|...+.. ..
T Consensus       133 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~-l~  211 (753)
T 3jro_A          133 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD-VA  211 (753)
T ss_dssp             SSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE-EE
T ss_pred             CCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEE-EE
Confidence            6  34456678999999999999             58899999999999999998763     1344556666644 44


Q ss_pred             cCCC---CceeEEecCCceEEEEEecccC-----c---------cc-eeEeecCCCccCCCCCCCeEEEeecCCC
Q 021484          240 QGRE---DHSRITLTPDVIMHVLRLQRRQ-----T---------LA-YRERRYNAADFESDEEEGETYLLGFSDS  296 (312)
Q Consensus       240 ~~~~---~~~l~s~~~d~~i~i~~~~~~~-----~---------~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~  296 (312)
                      ++++   +.++++++.|+.+++|++....     .         .+ ...+.|++..+.+...++.|+++++..+
T Consensus       212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          212 WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             ECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             eccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            6777   8999999999999999987642     0         11 1266778888888888899999998743

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-28  Score=226.16  Aligned_cols=223  Identities=11%  Similarity=0.144  Sum_probs=177.4

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCC--CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   78 (312)
                      |++||+.......+...         .+|..+|++++|+|+  + ++|++|+.||.|++||+.+++.             
T Consensus        33 I~vwd~~~~~~~~~~~l---------~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~~~-------------   89 (753)
T 3jro_A           33 IKIFEVEGETHKLIDTL---------TGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRW-------------   89 (753)
T ss_dssp             EEEEEEETTEEEEEEEE---------CCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETTEE-------------
T ss_pred             EEEEecCCCCCccceec---------cCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCCcc-------------
Confidence            57888875433222222         248899999999987  6 8999999999999999998752             


Q ss_pred             cccccccCCCccEEEEEEccC--CCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE
Q 021484           79 CPRHLIGKNNIHITGLAYSNT--SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  155 (312)
Q Consensus        79 ~~~~~~~~~~~~i~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  155 (312)
                      ........|...|.+++|+|+  +.+++++ .||.|++||+.++.              ......+.+|...  |.+++|
T Consensus        90 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~--------------~~~~~~~~~~~~~--v~~l~~  153 (753)
T 3jro_A           90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG--------------TTSPIIIDAHAIG--VNSASW  153 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS--------------CCCCEEEECCSSC--EEEEEE
T ss_pred             cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC--------------CcceeEeecCCCc--eEEEEe
Confidence            122223678999999999999  8888886 59999999998751              0234456677755  999999


Q ss_pred             ecC-------------CCCEEEEeccCceEEEEeccCC----eeEEEeecCccceEEEEEcCC---CCeEEEEeCCCcEE
Q 021484          156 FGP-------------NDEYVMSGSDCGHLFIWKKKGG----KLVRLMVGDRHVVNQLEPHPH---IPMFATCGIEKTVK  215 (312)
Q Consensus       156 ~s~-------------~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~p~---~~~l~t~~~d~~i~  215 (312)
                       +|             ++.+|++|+.||.|++||++++    .+...+.+|...|++++|+|+   ++++++++.||.|+
T Consensus       154 -~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~  232 (753)
T 3jro_A          154 -APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI  232 (753)
T ss_dssp             -CCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEE
T ss_pred             -cCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEE
Confidence             78             5899999999999999999877    566778899999999999999   89999999999999


Q ss_pred             EccCCCCC------CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          216 LWAPMPTD------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       216 iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      +||+.++.      ......+...+ ....+++++.++++++.|+.+++|++...
T Consensus       233 iwd~~~~~~~~~~~~~~~~~~~~~v-~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          233 IWTQDNEQGPWKKTLLKEEKFPDVL-WRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             EEEESSSSSCCBCCBSSSSCCSSCC-CCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             EecCCCCCCcceeEEeccCCCCCce-EEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            99998763      22233344444 44557889999999999999999998754

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=5.7e-29  Score=223.66  Aligned_cols=253  Identities=11%  Similarity=0.124  Sum_probs=192.5

Q ss_pred             CeeecccCc----cceeeEEecccccCCcCCCCccc-eEEEEEcC--CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCC
Q 021484            1 MWQFDLRSD----SATRLFYCSSFSENSKQPMNSIR-LNAIVIDP--RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT   73 (312)
Q Consensus         1 v~~wd~~~~----~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~   73 (312)
                      |++||+.+.    +....+           .+|... |++++|+|  ++ ++|++++.||.|++||+.+++...      
T Consensus        41 v~v~~~~~~~~~~~~~~~~-----------~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~~~~~~~------  102 (615)
T 1pgu_A           41 AFVRCLDDGDSKVPPVVQF-----------TGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTFDKESN------  102 (615)
T ss_dssp             EEEEECCSSCCSSCSEEEE-----------CTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEEEGGGT------
T ss_pred             EEEEECCCCCCccccceEE-----------ecCCCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCCCCcccc------
Confidence            468888765    322222           248889 99999999  98 899999999999999997551000      


Q ss_pred             CcccccccccccCCCccEEEEEEccCCCeEEEec-C----CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCc
Q 021484           74 PVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ  148 (312)
Q Consensus        74 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (312)
                      .... .....+..|...|.+++|+|++++|+++. +    +.|++||  .+                +....+.+|... 
T Consensus       103 ~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~----------------~~~~~~~~~~~~-  162 (615)
T 1pgu_A          103 SVEV-NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SG----------------NSLGEVSGHSQR-  162 (615)
T ss_dssp             EEEE-EEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TC----------------CEEEECCSCSSC-
T ss_pred             cccc-cccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CC----------------CcceeeecCCcc-
Confidence            0000 11222267889999999999999888864 4    5788888  33                466777788866 


Q ss_pred             eeeEEEEecCCCC-EEEEeccCceEEEEeccCCeeEEEeecCcc---ceEEEEEcCC-CCeEEEEeCCCcEEEccCCCCC
Q 021484          149 TVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVRLMVGDRH---VVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       149 ~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                       |.+++| +|+++ ++++++.|+.|++||+.+++.+..+.+|..   .|.+++|+|+ +++|++++.|+.|++||+.+++
T Consensus       163 -v~~~~~-~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  240 (615)
T 1pgu_A          163 -INACHL-KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE  240 (615)
T ss_dssp             -EEEEEE-CSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred             -EEEEEE-CCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence             999999 89987 799999999999999999999999999998   9999999999 9999999999999999998877


Q ss_pred             C-CCC-C---CChhhhhhhhccCCCCceeEEecCCceEEEEEecccCccceeE-------------eecCCCccCCCCCC
Q 021484          224 F-PPL-P---DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE-------------RRYNAADFESDEEE  285 (312)
Q Consensus       224 ~-~~~-~---~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~  285 (312)
                      . ..+ .   .|...+.... +. ++.++++++.|+.+++|++..........             ..++...+.....+
T Consensus       241 ~~~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  318 (615)
T 1pgu_A          241 FLKYIEDDQEPVQGGIFALS-WL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD  318 (615)
T ss_dssp             EEEECCBTTBCCCSCEEEEE-ES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT
T ss_pred             EeEEecccccccCCceEEEE-Ec-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECC
Confidence            4 444 3   5666664444 55 88999999999999999987543221111             11145556666667


Q ss_pred             CeEEEeecCC
Q 021484          286 GETYLLGFSD  295 (312)
Q Consensus       286 ~~v~~~~~~~  295 (312)
                      +.+++++...
T Consensus       319 g~i~~~d~~~  328 (615)
T 1pgu_A          319 GTLNFYELGH  328 (615)
T ss_dssp             SCEEEEETTE
T ss_pred             CCEEEEECCC
Confidence            7788887654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=1.2e-28  Score=238.38  Aligned_cols=250  Identities=16%  Similarity=0.195  Sum_probs=199.0

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+.           +|...|++++|+|++ .+|++++.|+.|++||+.++++              .
T Consensus       639 i~vw~~~~~~~~~~~~-----------~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~--------------~  692 (1249)
T 3sfz_A          639 LQVFKAETGEKLLDIK-----------AHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGKL--------------V  692 (1249)
T ss_dssp             EEEEETTTCCEEEEEC-----------CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE--------------E
T ss_pred             EEEEECCCCCEEEEec-----------cCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCCCce--------------E
Confidence            5789988765433332           388999999999998 8999999999999999998862              2


Q ss_pred             cccccCCCccEEEEEEccCC--CeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec
Q 021484           81 RHLIGKNNIHITGLAYSNTS--ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  157 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s  157 (312)
                      ..+ .+|...|.+++|+|++  .+++++ .|+.|++||+.++                +....+.+|...  |.+++| +
T Consensus       693 ~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~----------------~~~~~~~~h~~~--v~~~~~-s  752 (1249)
T 3sfz_A          693 HTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK----------------ECRNTMFGHTNS--VNHCRF-S  752 (1249)
T ss_dssp             EEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS----------------SEEEEECCCSSC--EEEEEE-C
T ss_pred             EEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc----------------chhheecCCCCC--EEEEEE-e
Confidence            222 6789999999999954  477776 5999999999987                677888889876  999999 9


Q ss_pred             CCCCEEEEeccCceEEEEeccCCeeEEEee--------------------------------------------------
Q 021484          158 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMV--------------------------------------------------  187 (312)
Q Consensus       158 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--------------------------------------------------  187 (312)
                      |++++|++++.||.|++||+.+++....+.                                                  
T Consensus       753 p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~  832 (1249)
T 3sfz_A          753 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL  832 (1249)
T ss_dssp             SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEE
T ss_pred             cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCce
Confidence            999999999999999999988765443321                                                  


Q ss_pred             -----cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          188 -----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       188 -----~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                           +|...|.+++|+|+++++++++.|+.|++|++.++.. ..+.+|...+. ...+++++..+++++.|+.+++|++
T Consensus       833 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~-~v~~spdg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH-GVMFSPDGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             EEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEEH
T ss_pred             eEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceE-EEEECCCCCEEEEEeCCCeEEEEEc
Confidence                 5677899999999999999999999999999988763 45556666664 4457889999999999999999996


Q ss_pred             cccC-----------------------------------------------ccceeEeecCCCccCCCCCCCeEEEeecC
Q 021484          262 QRRQ-----------------------------------------------TLAYRERRYNAADFESDEEEGETYLLGFS  294 (312)
Q Consensus       262 ~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  294 (312)
                      ....                                               ......+++++..+..+..++.+++++..
T Consensus       912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~  991 (1249)
T 3sfz_A          912 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP  991 (1249)
T ss_dssp             HHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETT
T ss_pred             cccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcC
Confidence            5310                                               11112456666777777777888888876


Q ss_pred             CCC
Q 021484          295 DSD  297 (312)
Q Consensus       295 ~~~  297 (312)
                      .+.
T Consensus       992 ~~~  994 (1249)
T 3sfz_A          992 NNR  994 (1249)
T ss_dssp             TTS
T ss_pred             CCc
Confidence            553

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.3e-29  Score=215.17  Aligned_cols=214  Identities=14%  Similarity=0.160  Sum_probs=161.5

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEcc---CCeecCCCCCCCCcccccccccccCCCccEEEEE--EccCCCeE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR---KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA--YSNTSELL  103 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l  103 (312)
                      |..+|++++|+|++ .+|++|+.||.|++||+.   +++........ .+..+...  ..++...+.++.  +++++.+|
T Consensus       110 h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~l  185 (437)
T 3gre_A          110 CSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRKINLK--NFGKNEYAVRMRAFVNEEKSLL  185 (437)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEEEEGG--GGSSCCCEEEEEEEECSSCEEE
T ss_pred             CCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccc-eeEEEEcc--CcccccCceEEEEEEcCCCCEE
Confidence            78899999999988 899999999999999995   44322110000 11111000  011566777877  56788888


Q ss_pred             EEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec--ccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC
Q 021484          104 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG--HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG  180 (312)
Q Consensus       104 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~  180 (312)
                      +++ .|+.|++||++++                +.+..+.+  |...  |.+++| +|++++|++|+.||.|++||++++
T Consensus       186 ~~~~~d~~i~iwd~~~~----------------~~~~~~~~~~h~~~--v~~~~~-s~~~~~l~s~~~dg~i~iwd~~~~  246 (437)
T 3gre_A          186 VALTNLSRVIIFDIRTL----------------ERLQIIENSPRHGA--VSSICI-DEECCVLILGTTRGIIDIWDIRFN  246 (437)
T ss_dssp             EEEETTSEEEEEETTTC----------------CEEEEEECCGGGCC--EEEEEE-CTTSCEEEEEETTSCEEEEETTTT
T ss_pred             EEEeCCCeEEEEeCCCC----------------eeeEEEccCCCCCc--eEEEEE-CCCCCEEEEEcCCCeEEEEEcCCc
Confidence            886 5999999999887                77888887  6654  999999 999999999999999999999999


Q ss_pred             eeEEEee-cCccceEEEEEc----CCCCeEEEEeCCCcEEEccCCCCCC-CCCC------------------------C-
Q 021484          181 KLVRLMV-GDRHVVNQLEPH----PHIPMFATCGIEKTVKLWAPMPTDF-PPLP------------------------D-  229 (312)
Q Consensus       181 ~~~~~~~-~~~~~v~~~~~~----p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~------------------------~-  229 (312)
                      +++..+. .|..+|.+++|+    |++.+|++++.|++|++||+++++. ..+.                        + 
T Consensus       247 ~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  326 (437)
T 3gre_A          247 VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGI  326 (437)
T ss_dssp             EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCC
T ss_pred             cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccc
Confidence            9998886 788899999665    4677999999999999999986541 1111                        1 


Q ss_pred             -ChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021484          230 -NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       230 -~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                       |...+. ...+. ++.++++++.|+.|++|++......
T Consensus       327 ~~~~~v~-~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~  363 (437)
T 3gre_A          327 RSLNALS-TISVS-NDKILLTDEATSSIVMFSLNELSSS  363 (437)
T ss_dssp             CSGGGGC-CEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred             ccCCceE-EEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence             333332 23344 5689999999999999998776433

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.9e-28  Score=211.45  Aligned_cols=203  Identities=12%  Similarity=0.102  Sum_probs=160.1

Q ss_pred             CCCccceEEEEEcCCCCcE-EEEEeCCCeEEEEEcc--CCeecCCCCCCCCcccccccccc-cCCCccEEEEEEccCCCe
Q 021484           27 PMNSIRLNAIVIDPRNPNY-FAVGGSDEYARVYDIR--KCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSEL  102 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~-l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~  102 (312)
                      ++|...|++++|+|++ .+ +++++.||.|++||+.  +++.              ...+. ..|...|.+++|+|++++
T Consensus        99 ~~~~~~v~~~~~s~d~-~~l~~~~~~dg~v~iwd~~~~~~~~--------------~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDE-SRLIACADSDKSLLVFDVDKTSKNV--------------LKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             -CCCCCEEEEEECTTS-SEEEEEEGGGTEEEEEEECSSSSSC--------------EEEEEEEECSSCEEEEEECTTSSE
T ss_pred             CccCCceEEEEEcCCC-CEEEEEECCCCeEEEEECcCCCCce--------------eeeeecccCCCCceEEEEcCCCCE
Confidence            3567789999999999 56 5999999999999998  6652              12111 256788999999999998


Q ss_pred             EEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCC-CCceEecccCCceeeEEEEecCC---CCEEEEeccCceEEEEec
Q 021484          103 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTVKGVNFFGPN---DEYVMSGSDCGHLFIWKK  177 (312)
Q Consensus       103 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~s~~---~~~l~~~~~dg~v~iwd~  177 (312)
                      |+++ .++.+++|++.++..             .. ....+.+|...  |.+++| +|+   +++|++++.|+.|++||+
T Consensus       164 l~~~~~~g~v~~~~~~~~~~-------------~~~~~~~~~~h~~~--v~~~~~-sp~~~~~~~l~s~~~d~~i~vwd~  227 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPE-------------EKFTQEPILGHVSM--LTDVHL-IKDSDGHQFIITSDRDEHIKISHY  227 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCC-------------SSCCCCCSEECSSC--EEEEEE-EECTTSCEEEEEEETTSCEEEEEE
T ss_pred             EEEEeCCCcEEEEecCCccc-------------ccccceeeecccCc--eEEEEE-cCCCCCCcEEEEEcCCCcEEEEEC
Confidence            8887 599999999987610             01 22367788866  999999 899   999999999999999999


Q ss_pred             cCCeeEEE-eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCCh------------------------
Q 021484          178 KGGKLVRL-MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNA------------------------  231 (312)
Q Consensus       178 ~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~------------------------  231 (312)
                      ++++.+.. +.+|...|.+++|+ ++++|++++.|++|++||+.+++. ..+..+.                        
T Consensus       228 ~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (450)
T 2vdu_B          228 PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII  306 (450)
T ss_dssp             SCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred             CCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence            99988877 56899999999999 999999999999999999998763 2222110                        


Q ss_pred             hhhhhhhccCCCCceeEEec-CCceEEEEEe
Q 021484          232 EKIMKANKQGREDHSRITLT-PDVIMHVLRL  261 (312)
Q Consensus       232 ~~~~~~~~~~~~~~~l~s~~-~d~~i~i~~~  261 (312)
                      ...+....+.+++.++++++ .++.+++|++
T Consensus       307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             eEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            01122334566788888887 8999999999

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=2.8e-28  Score=208.45  Aligned_cols=243  Identities=12%  Similarity=0.064  Sum_probs=186.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEe-cCC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDE  109 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~  109 (312)
                      ....++++|+...++++++.||.|++|++......     .      .....+.+|...|.+++|+| ++.+|+++ .|+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----~------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg  104 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----D------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDC  104 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----C------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTS
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----C------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCC
Confidence            34568899977445556889999999999654311     0      11222378999999999999 88899987 599


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCeeEEEe--
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLM--  186 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~--  186 (312)
                      .|++||+.++....         ........+.+|...  |.+++| +|++ ++|++++.||.|++||+.+++.+..+  
T Consensus       105 ~v~vw~~~~~~~~~---------~~~~~~~~~~~h~~~--v~~~~~-~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  172 (402)
T 2aq5_A          105 TVMVWEIPDGGLVL---------PLREPVITLEGHTKR--VGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP  172 (402)
T ss_dssp             EEEEEECCTTCCSS---------CBCSCSEEEECCSSC--EEEEEE-CSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred             eEEEEEccCCCCcc---------ccCCceEEecCCCCe--EEEEEE-CcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence            99999998752100         000356778888866  999999 8997 69999999999999999999999999  


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCC-CCChhhhhhhhccCCCCceeEEe---cCCceEEEEEe
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL-PDNAEKIMKANKQGREDHSRITL---TPDVIMHVLRL  261 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~s~---~~d~~i~i~~~  261 (312)
                      ..|...|.+++|+|++++|++++.|+.|++||+++++. ..+ ..|....+....+.+++.+++++   +.|+.+++||+
T Consensus       173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~  252 (402)
T 2aq5_A          173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT  252 (402)
T ss_dssp             TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred             CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence            78999999999999999999999999999999998764 334 44555434455577888899998   89999999998


Q ss_pred             cccCccc------------eeEeecCCCccC-CCCCCCeEEEeecCCCC
Q 021484          262 QRRQTLA------------YRERRYNAADFE-SDEEEGETYLLGFSDSD  297 (312)
Q Consensus       262 ~~~~~~~------------~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~  297 (312)
                      +......            ...+.+++..+. ++..++.|.++++..+.
T Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          253 KHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             TBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             ccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            7643311            114566666664 44567789999887654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=1.1e-28  Score=208.24  Aligned_cols=180  Identities=9%  Similarity=0.064  Sum_probs=141.5

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+|||+++.+....  ..          |...|++++|+|++ +++++++.+ .+++|+..+++.             ..
T Consensus       159 i~iwd~~~~~~~~~--~~----------~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~-------------~~  211 (365)
T 4h5i_A          159 MRIIDPSDLTEKFE--IE----------TRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSC-------------IA  211 (365)
T ss_dssp             EEEEETTTTEEEEE--EE----------CSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCE-------------EE
T ss_pred             EEEeECCCCcEEEE--eC----------CCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcc-------------ee
Confidence            58999987654332  22          56789999999999 799988755 566677666552             12


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCC----cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDE----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  155 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  155 (312)
                      ......|...|.+++|+|++++++++ .|+    .+++|++....            ........+.+|...  |++++|
T Consensus       212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~------------~~~~~~~~~~~~~~~--V~~~~~  277 (365)
T 4h5i_A          212 RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN------------TSVLRSKQVTNRFKG--ITSMDV  277 (365)
T ss_dssp             EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE------------EEEEEEEEEESSCSC--EEEEEE
T ss_pred             eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce------------ecceeeeeecCCCCC--eEeEEE
Confidence            22336788899999999999988886 455    58888886541            000123455677755  999999


Q ss_pred             ecCCCCEEEEeccCceEEEEeccCCeeEEEe-ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          156 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       156 ~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                       +|++++|++|+.|+.|+|||+++++++..+ .+|...|++++|+|++++||++|.|++||||++...
T Consensus       278 -Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          278 -DMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             -CTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             -CCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence             999999999999999999999999999875 789999999999999999999999999999998643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=6e-28  Score=206.18  Aligned_cols=262  Identities=13%  Similarity=0.153  Sum_probs=187.9

Q ss_pred             CeeecccCccceeeEEeccccc--CCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSE--NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   78 (312)
                      |++||+.+......+.......  .....+|...|.+++|+|+++.+|++++.||.|++||+.+++..            
T Consensus        68 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------  135 (408)
T 4a11_B           68 IVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA------------  135 (408)
T ss_dssp             EEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE------------
T ss_pred             EEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc------------
Confidence            5789998776555544322110  01113589999999999955589999999999999999988632            


Q ss_pred             cccccccCCCccEEEEEEccCC---CeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEE
Q 021484           79 CPRHLIGKNNIHITGLAYSNTS---ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  154 (312)
Q Consensus        79 ~~~~~~~~~~~~i~~~~~~~~~---~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  154 (312)
                        ..  ..+...+.+++|+|.+   .+++++ .++.|++||+.++                +....+.+|...  |.+++
T Consensus       136 --~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~----------------~~~~~~~~~~~~--v~~~~  193 (408)
T 4a11_B          136 --DV--FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG----------------SCSHILQGHRQE--ILAVS  193 (408)
T ss_dssp             --EE--EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS----------------CCCEEECCCCSC--EEEEE
T ss_pred             --ee--ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc----------------ceeeeecCCCCc--EEEEE
Confidence              11  2356788999999855   477776 6999999999887                677888888866  99999


Q ss_pred             EecCCCC-EEEEeccCceEEEEeccCCe-eEEEe---------------ecCccceEEEEEcCCCCeEEEEeCCCcEEEc
Q 021484          155 FFGPNDE-YVMSGSDCGHLFIWKKKGGK-LVRLM---------------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLW  217 (312)
Q Consensus       155 ~~s~~~~-~l~~~~~dg~v~iwd~~~~~-~~~~~---------------~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iw  217 (312)
                      | +|+++ +|++++.||.|++||+++++ ++..+               ..|...|.+++|+|++++|++++.|+.|++|
T Consensus       194 ~-~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  272 (408)
T 4a11_B          194 W-SPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW  272 (408)
T ss_dssp             E-CSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             E-CCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence            9 89988 58899999999999998765 44444               5688899999999999999999999999999


Q ss_pred             cCCCCCCC-CCCCC----hhhhhhhhccCCCCceeEEecCCceEEEEEecccC---------ccc-eeEeecCCCccCCC
Q 021484          218 APMPTDFP-PLPDN----AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ---------TLA-YRERRYNAADFESD  282 (312)
Q Consensus       218 d~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~---------~~~-~~~~~~~~~~~~~~  282 (312)
                      |+.+++.. ....+    ................++.++.++.+++|++....         ..+ ...+.+++..+.+.
T Consensus       273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  352 (408)
T 4a11_B          273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG  352 (408)
T ss_dssp             ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence            99876532 11111    11111111122234566666777888888764321         112 23677777777777


Q ss_pred             CCCCeEEEeecCCCC
Q 021484          283 EEEGETYLLGFSDSD  297 (312)
Q Consensus       283 ~~~~~v~~~~~~~~~  297 (312)
                      ..++.+.+|++..+.
T Consensus       353 ~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          353 SRDCNILAWVPSLYE  367 (408)
T ss_dssp             ETTSCEEEEEECC--
T ss_pred             CCCCeEEEEeCCCCC
Confidence            777778888876654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=4.1e-29  Score=241.55  Aligned_cols=244  Identities=10%  Similarity=0.077  Sum_probs=198.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+           .+|...|++++|+|++ +++++++.||.|++||+.+++..              
T Consensus       985 i~i~d~~~~~~~~~~-----------~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~-------------- 1038 (1249)
T 3sfz_A          985 IKIIELPNNRVFSSG-----------VGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGDYV-------------- 1038 (1249)
T ss_dssp             CEEEETTTTSCEEEC-----------CCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTEEE--------------
T ss_pred             EEEEEcCCCceeeec-----------ccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCceE--------------
Confidence            467777665432221           2488999999999999 89999999999999999988732              


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND  160 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~  160 (312)
                        ....|...|.+++|+|++.+++.+.|+.|++||+.++                +....+.+|...  |.+++| +|++
T Consensus      1039 --~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~----------------~~~~~~~~~~~~--v~~~~~-s~d~ 1097 (1249)
T 3sfz_A         1039 --FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG----------------RIERDFTCHQGT--VLSCAI-SSDA 1097 (1249)
T ss_dssp             --CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT----------------CCCEEEECCSSC--CCCEEE-CSSS
T ss_pred             --EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCC----------------ceeEEEcccCCc--EEEEEE-CCCC
Confidence              1257889999999999887766678999999999988                788889999866  999999 9999


Q ss_pred             CEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCC---------CCC
Q 021484          161 EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL---------PDN  230 (312)
Q Consensus       161 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~---------~~~  230 (312)
                      ++|++++.||.|++||+.+++++..+.+|...|++++|+|++++|++++.||+|++||+.+++. ..+         ..|
T Consensus      1098 ~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1177 (1249)
T 3sfz_A         1098 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1177 (1249)
T ss_dssp             SSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------C
T ss_pred             CEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999988764 322         234


Q ss_pred             hhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc----------ceeEeecCCCccCCCCCCCeEEEeecC
Q 021484          231 AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL----------AYRERRYNAADFESDEEEGETYLLGFS  294 (312)
Q Consensus       231 ~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~  294 (312)
                      ...+ ....+++++.++++++  +.+++|++......          ....+++++..+.+...+|.++++++.
T Consensus      1178 ~~~v-~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1178 GGWV-TDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             CSCC-CEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred             CceE-EEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence            4444 4455788999998886  89999998664322          112667777777777778888888763

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.8e-28  Score=209.68  Aligned_cols=217  Identities=15%  Similarity=0.242  Sum_probs=172.9

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+.           +|...|.+++|++   ++|++|+.||.|++||++...              ..
T Consensus       158 i~iwd~~~~~~~~~~~-----------~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~--------------~~  209 (401)
T 4aez_A          158 VDIYDVESQTKLRTMA-----------GHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIAN--------------HQ  209 (401)
T ss_dssp             EEEEETTTCCEEEEEC-----------CCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSS--------------CE
T ss_pred             EEEEECcCCeEEEEec-----------CCCCceEEEEECC---CEEEEEcCCCCEEEEecccCc--------------ce
Confidence            5788887765433332           3788999999954   699999999999999998543              22


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ...+..|...|.+++|+|++.+|+++ .|+.|++||+.++                +....+..|...  |.+++| +|+
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----------------~~~~~~~~~~~~--v~~~~~-~p~  270 (401)
T 4aez_A          210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS----------------IPKFTKTNHNAA--VKAVAW-CPW  270 (401)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS----------------SEEEEECCCSSC--CCEEEE-CTT
T ss_pred             eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC----------------CccEEecCCcce--EEEEEE-CCC
Confidence            22337789999999999999999887 5999999999887                677777788766  999999 886


Q ss_pred             C-CEEEEec--cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEccCCCCCC---CCCCCCh
Q 021484          160 D-EYVMSGS--DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTDF---PPLPDNA  231 (312)
Q Consensus       160 ~-~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~--~d~~i~iwd~~~~~~---~~~~~~~  231 (312)
                      + .++++++  .|+.|++||+.+++++..+. +...|.+++|+|+++++++++  .||.|++|++.++..   ..+.+|.
T Consensus       271 ~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~  349 (401)
T 4aez_A          271 QSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHD  349 (401)
T ss_dssp             STTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCS
T ss_pred             CCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCC
Confidence            6 4556654  79999999999999988886 567899999999999998854  899999999987642   2344566


Q ss_pred             hhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484          232 EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       232 ~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      ..+. ...+++++.++++++.|+.+++|++.....
T Consensus       350 ~~v~-~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          350 TRVL-YSALSPDGRILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             SCCC-EEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred             CCEE-EEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence            5554 345788999999999999999999887643

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.4e-28  Score=199.76  Aligned_cols=248  Identities=13%  Similarity=0.152  Sum_probs=190.4

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+..           |...|.+++|+|++ .+|++++.||.|++|++.....      .      ..
T Consensus        41 v~vw~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~------~------~~   96 (313)
T 3odt_A           41 VRLWSKDDQWLGTVVYT-----------GQGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFATSG------E------DP   96 (313)
T ss_dssp             EEEEEESSSEEEEEEEE-----------CSSCEEEEEEETTT-TEEEEEETTSCEEEEETTCCTT------S------CC
T ss_pred             EEEEECCCCEEEEEeec-----------CCccEEEEEECCCC-CEEEEecCCCeEEEEEeeecCC------C------Cc
Confidence            57899977654444433           67889999999998 8999999999999999976531      0      11


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ...+..|...|.+++|  ++.+++++ .|+.|++||  ..                +....+..|...  +.+++|++++
T Consensus        97 ~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~----------------~~~~~~~~~~~~--v~~~~~~~~~  154 (313)
T 3odt_A           97 LYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EG----------------SLVYNLQAHNAS--VWDAKVVSFS  154 (313)
T ss_dssp             -CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TT----------------EEEEEEECCSSC--EEEEEEEETT
T ss_pred             ccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CC----------------cEEEecccCCCc--eeEEEEccCC
Confidence            1222678999999999  46677776 699999999  33                566778888866  9999995559


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeec-CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKA  237 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~  237 (312)
                      ++++++++.||.|++||  ..+....+.. |...|.+++|+|++. +++++.|+.|++||+++++. ..+..|...+. .
T Consensus       155 ~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-~  230 (313)
T 3odt_A          155 ENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVY-C  230 (313)
T ss_dssp             TTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEE-E
T ss_pred             CCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEE-E
Confidence            99999999999999999  4567777776 889999999999998 99999999999999998764 44555666554 3


Q ss_pred             hccCCCCceeEEecCCceEEEEEecccCccce----------eEeecCCCccCCCCCCCeEEEeecCCCCCCC
Q 021484          238 NKQGREDHSRITLTPDVIMHVLRLQRRQTLAY----------RERRYNAADFESDEEEGETYLLGFSDSDASS  300 (312)
Q Consensus       238 ~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  300 (312)
                      ..+++++ .+++++.|+.+++|++........          ..+.+++. +.....++.+.++++..+....
T Consensus       231 ~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          231 IKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             EEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred             EEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence            4466766 689999999999999866532211          24555555 4456677889999987765443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.96  E-value=4e-28  Score=211.29  Aligned_cols=229  Identities=12%  Similarity=0.174  Sum_probs=175.9

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcC--CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCC--cc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP--RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP--VD   76 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~   76 (312)
                      |++||+++.+....+.           +|..+|.+++|++  ++ .++++|+.|+.|++||+.+............  ..
T Consensus       185 i~vwd~~~~~~~~~~~-----------~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~  252 (464)
T 3v7d_B          185 VRVWDIKKGCCTHVFE-----------GHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV  252 (464)
T ss_dssp             EEEEETTTTEEEEEEC-----------CCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred             EEEEECCCCcEEEEEC-----------CCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence            5789998776433332           3788999999984  55 8999999999999999987764322111100  00


Q ss_pred             ------cccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCce
Q 021484           77 ------TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT  149 (312)
Q Consensus        77 ------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (312)
                            .........+|...+.++  ++++.+++++ .|+.|++||+.++                +.+..+.+|...  
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~----------------~~~~~~~~~~~~--  312 (464)
T 3v7d_B          253 FHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM----------------KCLYILSGHTDR--  312 (464)
T ss_dssp             ESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT----------------EEEEEECCCSSC--
T ss_pred             eeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC----------------cEEEEecCCCCC--
Confidence                  000122336788888877  5778888886 5999999999887                678888888866  


Q ss_pred             eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCC
Q 021484          150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD  229 (312)
Q Consensus       150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~  229 (312)
                      |.+++| +|++++|++|+.||.|++||+++++++..+.+|...|.+++|+  +.++++++.||+|++||+.+...... .
T Consensus       313 v~~~~~-~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~-~  388 (464)
T 3v7d_B          313 IYSTIY-DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS-Y  388 (464)
T ss_dssp             EEEEEE-ETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE-E
T ss_pred             EEEEEE-cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee-e
Confidence            999999 8999999999999999999999999999999999999999997  57999999999999999987653211 1


Q ss_pred             ChhhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484          230 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      +.........+.+++.++++++ |+.+++|++.+...
T Consensus       389 ~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~  424 (464)
T 3v7d_B          389 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL  424 (464)
T ss_dssp             ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred             cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence            2233334455677888888888 89999999887643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=1.4e-28  Score=228.33  Aligned_cols=218  Identities=17%  Similarity=0.183  Sum_probs=181.1

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+++.+....+.           +|..+|++++|+|++ ++|++|+.||.|++||+.+++.              .
T Consensus        37 v~iwd~~~~~~~~~~~-----------~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~--------------~   90 (814)
T 3mkq_A           37 VEIWNYETQVEVRSIQ-----------VTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGEK--------------V   90 (814)
T ss_dssp             EEEEETTTTEEEEEEE-----------CCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCCE--------------E
T ss_pred             EEEEECCCCceEEEEe-----------cCCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcE--------------E
Confidence            5789988765444433           278899999999998 8999999999999999998862              2


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-  158 (312)
                      ..+ .+|...|++++|+|++.+|+++ .|+.|++||+.++.               .....+.+|...  |.+++| +| 
T Consensus        91 ~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~---------------~~~~~~~~~~~~--v~~~~~-~p~  151 (814)
T 3mkq_A           91 VDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---------------ALEQTFEGHEHF--VMCVAF-NPK  151 (814)
T ss_dssp             EEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS---------------EEEEEEECCSSC--EEEEEE-ETT
T ss_pred             EEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc---------------eEEEEEcCCCCc--EEEEEE-EcC
Confidence            222 6789999999999999988886 59999999998651               455677788866  999999 88 


Q ss_pred             CCCEEEEeccCceEEEEeccCCeeEEEeecCc-cceEEEEEcC--CCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhh
Q 021484          159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHP--HIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKI  234 (312)
Q Consensus       159 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~p--~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~  234 (312)
                      +++.|++++.||.|++||+.+++....+..+. ..+..++|+|  ++.++++++.||.|++||+.++.. ..+.+|...+
T Consensus       152 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v  231 (814)
T 3mkq_A          152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV  231 (814)
T ss_dssp             EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence            88999999999999999999888877776555 8899999999  999999999999999999987763 4444555555


Q ss_pred             hhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          235 MKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       235 ~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                       ....+++++.++++++.|+.+++|++...
T Consensus       232 -~~~~~~~~~~~l~~~~~dg~v~vwd~~~~  260 (814)
T 3mkq_A          232 -SFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (814)
T ss_dssp             -EEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             -EEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence             44557888999999999999999998764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=9.6e-29  Score=206.45  Aligned_cols=232  Identities=8%  Similarity=-0.050  Sum_probs=183.5

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~  106 (312)
                      +|...|++++|+|++ .+|++++.|+.|++|++.+++..           ...... ..|...|.+++|+|+++ +|+++
T Consensus         9 ~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~~-----------~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~   75 (342)
T 1yfq_A            9 APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKN-----------VDLLQS-LRYKHPLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             CCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTE-----------EEEEEE-EECSSCEEEEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCcc-----------ccceee-eecCCceEEEEECCCCCcEEEEE
Confidence            589999999999998 79999999999999999876400           011222 57889999999999999 88886


Q ss_pred             -cCCcEEEEEc-CCCcCCCCCcCCcccccCCCCCceEec--ccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC---
Q 021484          107 -NDELVYLFEK-NMGLGPSPLSLSPEDLQKREEPQVYSG--HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---  179 (312)
Q Consensus       107 -~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~---  179 (312)
                       .|+.|++||+ .++                 ....+.+  |...  |.+++| +| +++|++++.|+.|++||+++   
T Consensus        76 ~~dg~i~~wd~~~~~-----------------~~~~~~~~~~~~~--v~~l~~-~~-~~~l~s~~~d~~i~iwd~~~~~~  134 (342)
T 1yfq_A           76 TVQGEILKVDLIGSP-----------------SFQALTNNEANLG--ICRICK-YG-DDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             ETTSCEEEECSSSSS-----------------SEEECBSCCCCSC--EEEEEE-ET-TTEEEEEETTSEEEEECHHHHTT
T ss_pred             cCCCeEEEEEeccCC-----------------ceEeccccCCCCc--eEEEEe-CC-CCEEEEEcCCCeEEEEccccccc
Confidence             5999999999 775                 3466677  7765  999999 78 99999999999999999987   


Q ss_pred             ------CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC-CCCC---CCCCChhhhhhhhccCC-CCceeE
Q 021484          180 ------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP-TDFP---PLPDNAEKIMKANKQGR-EDHSRI  248 (312)
Q Consensus       180 ------~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~-~~~~---~~~~~~~~~~~~~~~~~-~~~~l~  248 (312)
                            ++++..+. |...|.+++|+|++  +++++.|+.|++||++. ....   ....+...+ ....+.+ ++.+++
T Consensus       135 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i-~~i~~~~~~~~~l~  210 (342)
T 1yfq_A          135 GVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI-RDVALLPKEQEGYA  210 (342)
T ss_dssp             BCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCE-EEEEECSGGGCEEE
T ss_pred             ccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCce-eEEEECCCCCCEEE
Confidence                  66666666 88899999999987  99999999999999988 4421   112233333 4455777 889999


Q ss_pred             EecCCceEEEEEeccc------Cc------------------cc-eeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          249 TLTPDVIMHVLRLQRR------QT------------------LA-YRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       249 s~~~d~~i~i~~~~~~------~~------------------~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      +++.|+.+++|++...      ..                  .+ ...+.+++..+.+...++.|+++|...+.
T Consensus       211 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             EEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence            9999999999998654      11                  11 12566677778888888889999987654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=1.2e-27  Score=207.22  Aligned_cols=240  Identities=13%  Similarity=0.190  Sum_probs=190.2

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+           .+|..+|.+++|++   .++++|+.||+|++||+.+++.              .
T Consensus       141 i~vwd~~~~~~~~~~-----------~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~--------------~  192 (445)
T 2ovr_B          141 LKVWSAVTGKCLRTL-----------VGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGEC--------------I  192 (445)
T ss_dssp             EEEEETTTCCEEEEC-----------CCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEE--------------E
T ss_pred             EEEEECCCCcEEEEE-----------cCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCcCcE--------------E
Confidence            578888876533322           24889999999983   6999999999999999998872              2


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+ .+|...|.+++|+  +..++++ .|+.|++||+.++                +....+.+|...  +.+++|   +
T Consensus       193 ~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~----------------~~~~~~~~~~~~--v~~~~~---~  248 (445)
T 2ovr_B          193 HTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG----------------QCLHVLMGHVAA--VRCVQY---D  248 (445)
T ss_dssp             EEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC----------------CEEEEEECCSSC--EEEEEE---C
T ss_pred             EEE-CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC----------------cEEEEEcCCccc--EEEEEE---C
Confidence            222 6789999999996  4567775 6999999999987                677888888866  999987   6


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN  238 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~  238 (312)
                      ++++++|+.||.|++||+++++++..+.+|...|.+++|  ++.++++++.|+.|++||+++++. ..+.+|...+..  
T Consensus       249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~--  324 (445)
T 2ovr_B          249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG--  324 (445)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE--
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEE--
Confidence            889999999999999999999999999999999999999  888999999999999999988763 445555544432  


Q ss_pred             ccCCCCceeEEecCCceEEEEEecccCcccee-----------EeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          239 KQGREDHSRITLTPDVIMHVLRLQRRQTLAYR-----------ERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       239 ~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                       ...++.++++++.|+.+++||++........           .....+..+.+...++.|.++++.++.
T Consensus       325 -~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~  393 (445)
T 2ovr_B          325 -MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE  393 (445)
T ss_dssp             -EEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred             -EEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCc
Confidence             2335679999999999999998654322111           122245567777788899999987765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.5e-28  Score=209.53  Aligned_cols=237  Identities=11%  Similarity=0.032  Sum_probs=150.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcC--------CCCcEEEEEeCCCeEEEEEccCCeecCCCCCC
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP--------RNPNYFAVGGSDEYARVYDIRKCHWYSPISSD   72 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~   72 (312)
                      |+|||++............      ..||...|++++|+|        ++ ++||+|+.|++|++||+.++.        
T Consensus       113 v~lw~~~~~~~~~~~~~~~------~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~~~--------  177 (393)
T 4gq1_A          113 VRLIITKNETIITQHVLGG------KSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTDEG--------  177 (393)
T ss_dssp             EEEEEEETTEEEEEEEECT------TTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEETTE--------
T ss_pred             EEEEECCCCccceeeeecc------cCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCCCc--------
Confidence            5889988765433333322      246999999999998        56 899999999999999998775        


Q ss_pred             CCcccccccccccCCCccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCcCCCCCcC-----Ccc----cccCCCCCceE
Q 021484           73 TPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSL-----SPE----DLQKREEPQVY  141 (312)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~-----~~~----~~~~~~~~~~~  141 (312)
                            +.... ..|...+.+++|+|++. +|+++ .|+.|++||+.++........     ..+    ...........
T Consensus       178 ------~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  250 (393)
T 4gq1_A          178 ------PILAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS  250 (393)
T ss_dssp             ------EEEEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred             ------eeeee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence                  22222 56788999999999885 77776 599999999987632111000     000    00000111223


Q ss_pred             ecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEc------------------C--C
Q 021484          142 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH------------------P--H  201 (312)
Q Consensus       142 ~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~------------------p--~  201 (312)
                      .+|...  +.++.|++++++.|++++.|+.+++||+.+++....+..|...+..+.+.                  |  +
T Consensus       251 ~~~~~~--v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (393)
T 4gq1_A          251 SGIASS--LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYM  328 (393)
T ss_dssp             -CCSSS--CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCT
T ss_pred             cccccc--ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCC
Confidence            455544  89999977999999999999999999998887766666555444443333                  3  2


Q ss_pred             CCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          202 IPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       202 ~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      +.++++++.||+|++||+.++.. ..+..+...+ ....|++++++|++++.++ +.+|++..
T Consensus       329 ~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V-~svafspdG~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          329 DYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPI-VDFCWHQDGSHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             TEEEEEETTTTEEEEEETTCTTCCEEEEECSSCE-EEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEEecCCCCcE-EEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence            23567788999999999988764 3334455555 4556899999999988766 56666543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=1.5e-27  Score=206.65  Aligned_cols=238  Identities=16%  Similarity=0.241  Sum_probs=185.1

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+.           +|...|.+++|++   ..+++|+.||.|++||+.+++.              .
T Consensus       181 i~vwd~~~~~~~~~~~-----------~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~--------------~  232 (445)
T 2ovr_B          181 LKVWNAETGECIHTLY-----------GHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQC--------------L  232 (445)
T ss_dssp             EEEEETTTTEEEEEEC-----------CCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCE--------------E
T ss_pred             EEEEECCcCcEEEEEC-----------CCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcE--------------E
Confidence            5789988765433332           3788999999964   5799999999999999998762              2


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ..+ .+|...|.+++|  ++.+++++ .|+.|++||+.++                +....+.+|...  +.+++|   +
T Consensus       233 ~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~--v~~~~~---~  288 (445)
T 2ovr_B          233 HVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE----------------TCLHTLQGHTNR--VYSLQF---D  288 (445)
T ss_dssp             EEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT----------------EEEEEECCCSSC--EEEEEE---C
T ss_pred             EEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC----------------cEeEEecCCCCc--eEEEEE---C
Confidence            222 678999999999  67777776 6999999999887                677888888866  999987   6


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCC---Chhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD---NAEKIM  235 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~---~~~~~~  235 (312)
                      ++++++++.||.|++||+++++++..+.+|...+.++.+  +++++++++.||.|++||+++++. ..+..   |...+.
T Consensus       289 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  366 (445)
T 2ovr_B          289 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT  366 (445)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEE
Confidence            899999999999999999999999999999999988877  567999999999999999987763 33332   444443


Q ss_pred             hhhccCCCCceeEEecCCceEEEEEecccCccce---------------eEeecCCCccCCCCCCCe----EEEeecCC
Q 021484          236 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY---------------RERRYNAADFESDEEEGE----TYLLGFSD  295 (312)
Q Consensus       236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~----v~~~~~~~  295 (312)
                      ... +  ++.++++++.|+.+++|++........               ..+.+++..++....+|.    ++++||+.
T Consensus       367 ~~~-~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          367 CLQ-F--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEE-E--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEE-E--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            332 2  467999999999999999876532211               145566666666655554    78888754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=5.4e-28  Score=196.48  Aligned_cols=210  Identities=14%  Similarity=0.071  Sum_probs=146.7

Q ss_pred             ccceEEEEEcCC----CCcEEEEEeCCCeEEEEEccCCeecCCCC--CCCCcccccc------cccccCCCccEEEEEEc
Q 021484           30 SIRLNAIVIDPR----NPNYFAVGGSDEYARVYDIRKCHWYSPIS--SDTPVDTFCP------RHLIGKNNIHITGLAYS   97 (312)
Q Consensus        30 ~~~v~~~~~~p~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~i~~~~~~   97 (312)
                      ...|.+++|+|+    + +.+++++.  .+++|++.+++++....  .+..++.+..      ...+..|...+..++|+
T Consensus       111 ~~~v~sla~spd~~~~~-~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs  187 (356)
T 2w18_A          111 IREIRALFCSSDDESEK-QVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA  187 (356)
T ss_dssp             EEEEEEECC------CC-EEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred             ccceEEEEECCCccccc-cEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence            457889999998    7 67777664  25555555555433211  1222211111      11114677778888888


Q ss_pred             c---CCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC-CceeeEEEEecCCCCEE---------
Q 021484           98 N---TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFFGPNDEYV---------  163 (312)
Q Consensus        98 ~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~s~~~~~l---------  163 (312)
                      +   ++.+|+++ .|++|+|||+.++                ++++++.+|.. ...+.+++| +|+++++         
T Consensus       188 ~~~g~~~~LaSgS~D~TIkIWDl~TG----------------k~l~tL~g~~~~v~~v~~vaf-SpdG~~lvs~s~~~~~  250 (356)
T 2w18_A          188 EVQGMQEALLGTTIMNNIVIWNLKTG----------------QLLKKMHIDDSYQASVCHKAY-SEMGLLFIVLSHPCAK  250 (356)
T ss_dssp             EEETSTTEEEEEETTSEEEEEETTTC----------------CEEEEEECCC---CCCEEEEE-EETTEEEEEEC-----
T ss_pred             ccCCCCceEEEecCCCcEEEEECCCC----------------cEEEEEcCCCcceeeeEEEEE-CCCCCEEEEeccCCCc
Confidence            8   56789986 5999999999998                78888886542 123778889 8999886         


Q ss_pred             ---EEeccCceEEEEeccCCeeEEEe-----ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhh
Q 021484          164 ---MSGSDCGHLFIWKKKGGKLVRLM-----VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKI  234 (312)
Q Consensus       164 ---~~~~~dg~v~iwd~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~  234 (312)
                         ++|+.|++|++||..+++.+..+     .+|...+.+..+  ++..+++++.|++|+|||+.+++. .++.+|...+
T Consensus       251 w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~v  328 (356)
T 2w18_A          251 ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQH  328 (356)
T ss_dssp             -------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CC
T ss_pred             ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCe
Confidence               56788999999999999987765     256555544444  478899999999999999999874 6677788777


Q ss_pred             hhhhccCCCCceeEEecCCceEEEEEe
Q 021484          235 MKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       235 ~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      +....+++++.+|++++.|++|++|++
T Consensus       329 vs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          329 WSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEecC
Confidence            666679999999999999999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2e-27  Score=195.82  Aligned_cols=229  Identities=17%  Similarity=0.203  Sum_probs=180.1

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      +|..+|++++| |++ .+|++++.||.|++||+.+++.              .. .+..|...|.+++|+|++++|+++ 
T Consensus        16 ~h~~~v~~~~~-~~~-~~l~s~~~dg~v~vw~~~~~~~--------------~~-~~~~~~~~v~~~~~~~~~~~l~~~~   78 (313)
T 3odt_A           16 GHDQDVRDVVA-VDD-SKVASVSRDGTVRLWSKDDQWL--------------GT-VVYTGQGFLNSVCYDSEKELLLFGG   78 (313)
T ss_dssp             CCSSCEEEEEE-EET-TEEEEEETTSEEEEEEESSSEE--------------EE-EEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCCcEEEEe-cCC-CEEEEEEcCCcEEEEECCCCEE--------------EE-EeecCCccEEEEEECCCCCEEEEec
Confidence            58999999999 887 7999999999999999987752              22 226788999999999999988886 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .|+.|++|++....             ..+....+.+|...  |.+++|   ++++|++++.||.|++||  .++.+..+
T Consensus        79 ~dg~i~~~~~~~~~-------------~~~~~~~~~~~~~~--i~~~~~---~~~~l~~~~~d~~i~~~d--~~~~~~~~  138 (313)
T 3odt_A           79 KDTMINGVPLFATS-------------GEDPLYTLIGHQGN--VCSLSF---QDGVVISGSWDKTAKVWK--EGSLVYNL  138 (313)
T ss_dssp             TTSCEEEEETTCCT-------------TSCC-CEECCCSSC--EEEEEE---ETTEEEEEETTSEEEEEE--TTEEEEEE
T ss_pred             CCCeEEEEEeeecC-------------CCCcccchhhcccC--EEEEEe---cCCEEEEEeCCCCEEEEc--CCcEEEec
Confidence            59999999997641             12456677788866  999998   477999999999999999  67888899


Q ss_pred             ecCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCCCCCCCC-ChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          187 VGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       187 ~~~~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ..|...+.+++|+| ++..+++++.|+.|++||.... ...+.. +... +....+++++. +++++.|+.+++|+++..
T Consensus       139 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~-i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~  215 (313)
T 3odt_A          139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-IKTFSGIHNDV-VRHLAVVDDGH-FISCSNDGLIKLVDMHTG  215 (313)
T ss_dssp             ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-EEEECSSCSSC-EEEEEEEETTE-EEEEETTSEEEEEETTTC
T ss_pred             ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce-EEEEeccCccc-EEEEEEcCCCe-EEEccCCCeEEEEECCch
Confidence            99999999999988 8999999999999999994332 223333 3333 34455666666 999999999999998754


Q ss_pred             Cccce----------eEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          265 QTLAY----------RERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       265 ~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      .....          ..+.+++ .+.+...++.|.++++..+.
T Consensus       216 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~  257 (313)
T 3odt_A          216 DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS  257 (313)
T ss_dssp             CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC
T ss_pred             hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc
Confidence            32211          2455555 57777788899999987664

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=9.3e-28  Score=200.46  Aligned_cols=217  Identities=11%  Similarity=0.040  Sum_probs=167.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCc-EEEEEeCCCeEEEEEc-cCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPN-YFAVGGSDEYARVYDI-RKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~   78 (312)
                      |++||+.+..........        .+|...|++++|+|++ + +|++|+.||.|++||+ .+++.             
T Consensus        35 v~iw~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~-------------   92 (342)
T 1yfq_A           35 LTVYKFDIQAKNVDLLQS--------LRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGSPSF-------------   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEE--------EECSSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSSSSE-------------
T ss_pred             EEEEEeCCCCccccceee--------eecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccCCce-------------
Confidence            578998876522221111        0278899999999998 8 9999999999999999 77652             


Q ss_pred             cccccccC--CCccEEEEEEccCCCeEEEe-cCCcEEEEEcCC---------CcCCCCCcCCcccccCCCCCceEecccC
Q 021484           79 CPRHLIGK--NNIHITGLAYSNTSELLISY-NDELVYLFEKNM---------GLGPSPLSLSPEDLQKREEPQVYSGHRN  146 (312)
Q Consensus        79 ~~~~~~~~--~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (312)
                         ..+..  |...|.+++|+| +.+|+++ .|+.|++||+.+         .                +.+..+. +..
T Consensus        93 ---~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------------~~~~~~~-~~~  151 (342)
T 1yfq_A           93 ---QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKN----------------LNSNNTK-VKN  151 (342)
T ss_dssp             ---EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEE----------------SCSSSSS-SCC
T ss_pred             ---EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccC----------------CeeeEEe-eCC
Confidence               12256  899999999999 8888886 699999999976         4                4445554 554


Q ss_pred             CceeeEEEEecCCCCEEEEeccCceEEEEeccC-Ce--eEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCC
Q 021484          147 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GK--LVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       147 ~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~-~~--~~~~~~~~~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                      .  +.+++| ++++  +++++.++.|++||+++ ++  .......|...|.+++|+| +++++++++.||.|++|++...
T Consensus       152 ~--v~~~~~-~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          152 K--IFTMDT-NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             C--EEEEEE-CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             c--eEEEEe-cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence            4  999999 7776  99999999999999987 44  3334456788999999999 9999999999999999998765


Q ss_pred             ------C-CCCCCCChh--------hhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          223 ------D-FPPLPDNAE--------KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       223 ------~-~~~~~~~~~--------~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                            . ...+..|..        ..+....+++++.++++++.|+.+++||+....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence                  2 223333322        123445578889999999999999999987654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-28  Score=212.07  Aligned_cols=189  Identities=11%  Similarity=0.081  Sum_probs=150.7

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCc-----cEEEEEEccCCCeE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI-----HITGLAYSNTSELL  103 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l  103 (312)
                      |...|.+++|+|+| .+||+++.||.|++||... .               ...+ . |..     .+.+++|||+|++|
T Consensus        84 ~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~-~---------------l~~l-~-~~~~~~~~sv~svafSPDG~~L  144 (588)
T 2j04_A           84 PVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK-M---------------LTNL-D-SKGNLSSRTYHCFEWNPIESSI  144 (588)
T ss_dssp             CSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE-E---------------EEEC-C-CSSCSTTTCEEEEEECSSSSCE
T ss_pred             CCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc-e---------------eeec-c-CCCccccccEEEEEEcCCCCEE
Confidence            56789999999999 8999999999999999543 1               1111 3 333     59999999999999


Q ss_pred             EEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCC-------CceE----ecccCCceeeEEEEecCCCCEEEEeccCce
Q 021484          104 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREE-------PQVY----SGHRNSQTVKGVNFFGPNDEYVMSGSDCGH  171 (312)
Q Consensus       104 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~  171 (312)
                      +++ .||+|++||+.++                ..       +..+    .+|...  |.+++| +|+|  +++++.|+.
T Consensus       145 Asgs~DGtVkIWd~~~~----------------~l~~~~~i~l~ti~~~~~gh~~~--V~sVaw-SPdg--Laass~D~t  203 (588)
T 2j04_A          145 VVGNEDGELQFFSIRKN----------------SENTPEFYFESSIRLSDAGSKDW--VTHIVW-YEDV--LVAALSNNS  203 (588)
T ss_dssp             EEEETTSEEEEEECCCC----------------TTTCCCCEEEEEEECSCTTCCCC--EEEEEE-ETTE--EEEEETTCC
T ss_pred             EEEcCCCEEEEEECCCC----------------ccccccceeeeeeeccccccccc--EEEEEE-cCCc--EEEEeCCCe
Confidence            997 5999999999876                22       3555    455544  999999 8999  888899999


Q ss_pred             EEEEeccCCee---EEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCC-CChhhhhhhhcc--CCCC
Q 021484          172 LFIWKKKGGKL---VRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQ--GRED  244 (312)
Q Consensus       172 v~iwd~~~~~~---~~~~~-~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~--~~~~  244 (312)
                      |++||+..++.   ..+++ +|...|.+++|+  +..+|+++ +++|++||+.++....+. +|...+... .+  ++++
T Consensus       204 VrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~v-a~~~s~d~  279 (588)
T 2j04_A          204 VFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHII-PLNHEKES  279 (588)
T ss_dssp             EEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEE-EETTCSSC
T ss_pred             EEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEE-EeeeCCCC
Confidence            99999987763   35664 788899999999  68899887 799999999988763333 677666543 45  6777


Q ss_pred             ceeEEecCCceEEEEEec
Q 021484          245 HSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       245 ~~l~s~~~d~~i~i~~~~  262 (312)
                      ..++++..+|. ++|.++
T Consensus       280 ~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          280 TILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EEEEECSSCEE-EEEESS
T ss_pred             CEEEEEcCCCC-EEEeec
Confidence            88999999999 999865

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1e-27  Score=206.82  Aligned_cols=208  Identities=12%  Similarity=0.065  Sum_probs=152.1

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCC---------CCCCccccc------ccccccCCCccEEEE
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS---------SDTPVDTFC------PRHLIGKNNIHITGL   94 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~------~~~~~~~~~~~i~~~   94 (312)
                      ...|.+++|+|+| +++|+++.|++|+  |....+.+..-.         +.+....+.      ...+...|...|.++
T Consensus        15 ~~~v~sv~~SpDG-~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~v   91 (588)
T 2j04_A           15 EDWKNNLTWARDG-TLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVC   91 (588)
T ss_dssp             SSSSCCEEECTTS-CEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEE
T ss_pred             hccEEEEEECCCC-CEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEE
Confidence            4579999999999 8999999999998  655554331000         000000000      011112557889999


Q ss_pred             EEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC---CceeeEEEEecCCCCEEEEeccCc
Q 021484           95 AYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---SQTVKGVNFFGPNDEYVMSGSDCG  170 (312)
Q Consensus        95 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~~~s~~~~~l~~~~~dg  170 (312)
                      +|+|+|+.||++ .||.|++||..+                  ++..+. |..   ...+.+++| +|+|++|++|+.||
T Consensus        92 awSPdG~~LAs~s~dg~V~iwd~~~------------------~l~~l~-~~~~~~~~sv~svaf-SPDG~~LAsgs~DG  151 (588)
T 2j04_A           92 KPSPIDDWMAVLSNNGNVSVFKDNK------------------MLTNLD-SKGNLSSRTYHCFEW-NPIESSIVVGNEDG  151 (588)
T ss_dssp             EECSSSSCEEEEETTSCEEEEETTE------------------EEEECC-CSSCSTTTCEEEEEE-CSSSSCEEEEETTS
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCc------------------eeeecc-CCCccccccEEEEEE-cCCCCEEEEEcCCC
Confidence            999999999986 599999999532                  333334 332   123999999 99999999999999


Q ss_pred             eEEEEeccCCe-------eEEEe----ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC----C-CCChhhh
Q 021484          171 HLFIWKKKGGK-------LVRLM----VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP----L-PDNAEKI  234 (312)
Q Consensus       171 ~v~iwd~~~~~-------~~~~~----~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~----~-~~~~~~~  234 (312)
                      +|++||+.+++       .+.++    .+|...|.+++|+|+|  +++++.|++|++|++.++...+    + .+|...+
T Consensus       152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V  229 (588)
T 2j04_A          152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI  229 (588)
T ss_dssp             EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred             EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence            99999999875       35666    5677899999999999  8888999999999998887543    4 3455556


Q ss_pred             hhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484          235 MKANKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       235 ~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      .... ++  +..+++++ ++.+++|++.....
T Consensus       230 ~sva-Fs--g~~LASa~-~~tIkLWd~~~~~~  257 (588)
T 2j04_A          230 TDLK-IV--DYKVVLTC-PGYVHKIDLKNYSI  257 (588)
T ss_dssp             CCEE-EE--TTEEEEEC-SSEEEEEETTTTEE
T ss_pred             EEEE-EE--CCEEEEEe-CCeEEEEECCCCeE
Confidence            5554 44  46777776 69999999876544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=7.9e-28  Score=207.82  Aligned_cols=212  Identities=11%  Similarity=0.258  Sum_probs=169.1

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+++.+....+.           +|...|.+++|++   ..+++|+.||.|++||+.+++..            ..
T Consensus       195 i~vwd~~~~~~~~~~~-----------~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~------------~~  248 (435)
T 1p22_A          195 VRVWDVNTGEMLNTLI-----------HHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDI------------TL  248 (435)
T ss_dssp             EEEEESSSCCEEEEEC-----------CCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCC------------EE
T ss_pred             EEEEECCCCcEEEEEc-----------CCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCc------------ee
Confidence            5789998776433332           3788999999975   58999999999999999877521            11


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      .....+|...|.+++|  ++++++++ .|+.|++||+.++                +.+..+.+|...  +.+++|   +
T Consensus       249 ~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~----------------~~~~~~~~~~~~--v~~~~~---~  305 (435)
T 1p22_A          249 RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC----------------EFVRTLNGHKRG--IACLQY---R  305 (435)
T ss_dssp             EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE---E
T ss_pred             eeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC----------------cEEEEEcCCCCc--EEEEEe---C
Confidence            2334788999999999  67788886 6999999999987                788888888866  999988   4


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC----------CCCCCC
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----------FPPLPD  229 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~----------~~~~~~  229 (312)
                      ++++++|+.||.|++||+++++++..+.+|...|.+++|  ++.+|++++.||.|++||+.++.          +..+.+
T Consensus       306 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  383 (435)
T 1p22_A          306 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE  383 (435)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC
Confidence            789999999999999999999999999999999999999  78899999999999999986543          233455


Q ss_pred             ChhhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484          230 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      |...+....+   ++..+++++.|+.+++|++.....
T Consensus       384 h~~~v~~l~~---~~~~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          384 HSGRVFRLQF---DEFQIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             CSSCCCCEEE---CSSCEEECCSSSEEEEEC------
T ss_pred             CCCCeEEEEe---CCCEEEEEeCCCEEEEEECCCCCC
Confidence            6666654443   678899999999999999876643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=4.1e-27  Score=198.15  Aligned_cols=206  Identities=13%  Similarity=0.162  Sum_probs=159.9

Q ss_pred             CCCccceEEEEEcCCC--CcEEEEEeCCCeEEEEEccC-CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021484           27 PMNSIRLNAIVIDPRN--PNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  103 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~--~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  103 (312)
                      .+|...|++++|+|++  +++|++|+.||.|++||+.+ +.              .....+.+|...|.+++|+|++++|
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~--------------~~~~~~~~h~~~v~~~~~~~~~~~l  101 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ--------------TIPKAQQMHTGPVLDVCWSDDGSKV  101 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--------------EEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--------------eeEEEeccccCCEEEEEECcCCCEE
Confidence            4699999999999984  38999999999999999987 33              2223337799999999999999988


Q ss_pred             EEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe-cCCCCEEEEeccCceEEEEeccCCe
Q 021484          104 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF-GPNDEYVMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       104 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-s~~~~~l~~~~~dg~v~iwd~~~~~  181 (312)
                      +++ .|+.|++||+.++                +. ..+..|...  |.+++|. ++++++|++++.||.|++||+++++
T Consensus       102 ~s~~~dg~v~iwd~~~~----------------~~-~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A          102 FTASCDKTAKMWDLSSN----------------QA-IQIAQHDAP--VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             EEEETTSEEEEEETTTT----------------EE-EEEEECSSC--EEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred             EEEcCCCcEEEEEcCCC----------------Cc-eeeccccCc--eEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence            886 5999999999886                33 345667765  9999983 6788999999999999999999887


Q ss_pred             eEEEeecCc-----------------------------------------cceEEEEEcCCCCe----EEEEeCCCcEEE
Q 021484          182 LVRLMVGDR-----------------------------------------HVVNQLEPHPHIPM----FATCGIEKTVKL  216 (312)
Q Consensus       182 ~~~~~~~~~-----------------------------------------~~v~~~~~~p~~~~----l~t~~~d~~i~i  216 (312)
                      ++..+..+.                                         ..+..+.+.++...    +++++.|+.|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i  242 (368)
T 3mmy_A          163 PMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI  242 (368)
T ss_dssp             CSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred             EEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence            766665432                                         22344444444433    999999999999


Q ss_pred             ccCCCCC----CCCCCCChhh-----------hhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          217 WAPMPTD----FPPLPDNAEK-----------IMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       217 wd~~~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      |++....    ...+..|...           .+....+++++.++++++.|+.|++||+....
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~  306 (368)
T 3mmy_A          243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART  306 (368)
T ss_dssp             EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence            9998763    2333334331           23455678889999999999999999987653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.8e-27  Score=205.26  Aligned_cols=215  Identities=9%  Similarity=0.060  Sum_probs=162.5

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe---ecCCCCCCCC--------------------------------
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH---WYSPISSDTP--------------------------------   74 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~--------------------------------   74 (312)
                      ..++++++|+|++ ++|+++ .++.|++||+.+++   .+........                                
T Consensus         4 ~~p~~~v~~s~dg-~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSRDG-SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECSSS-SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecCCC-CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            3478999999999 555555 57899999998887   3322211100                                


Q ss_pred             --c-----ccccccccccCCCccEEEEEEccCCCeE-EEe-cCCcEEEEEcC--CCcCCCCCcCCcccccCCCCCceEec
Q 021484           75 --V-----DTFCPRHLIGKNNIHITGLAYSNTSELL-ISY-NDELVYLFEKN--MGLGPSPLSLSPEDLQKREEPQVYSG  143 (312)
Q Consensus        75 --~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~-~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (312)
                        +     ...........|...|.+++|+|++++| +++ .|+.|++||+.  ++                +....+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~----------------~~~~~~~~  145 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK----------------NVLKLRKR  145 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS----------------SCEEEEEE
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC----------------ceeeeeec
Confidence              0     0000001112456689999999999985 776 59999999998  65                56677764


Q ss_pred             ccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE----EeecCccceEEEEEcCC---CCeEEEEeCCCcEEE
Q 021484          144 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR----LMVGDRHVVNQLEPHPH---IPMFATCGIEKTVKL  216 (312)
Q Consensus       144 ~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~p~---~~~l~t~~~d~~i~i  216 (312)
                      +.....|.+++| +|++++|++++.+|.|++|++.+++...    .+.+|...|++++|+|+   +++|++++.|++|++
T Consensus       146 ~~~~~~v~~~~~-sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~v  224 (450)
T 2vdu_B          146 FCFSKRPNAISI-AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKI  224 (450)
T ss_dssp             EECSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEE
T ss_pred             ccCCCCceEEEE-cCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEE
Confidence            432244999999 9999999999999999999998876543    77789999999999999   999999999999999


Q ss_pred             ccCCCCCC-CC-CCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          217 WAPMPTDF-PP-LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       217 wd~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      ||+.++.. .. +.+|...+... .++ ++.++++++.|+.|++||+....
T Consensus       225 wd~~~~~~~~~~~~~h~~~v~~~-~~s-d~~~l~s~~~d~~v~vwd~~~~~  273 (450)
T 2vdu_B          225 SHYPQCFIVDKWLFGHKHFVSSI-CCG-KDYLLLSAGGDDKIFAWDWKTGK  273 (450)
T ss_dssp             EEESCTTCEEEECCCCSSCEEEE-EEC-STTEEEEEESSSEEEEEETTTCC
T ss_pred             EECCCCceeeeeecCCCCceEEE-EEC-CCCEEEEEeCCCeEEEEECCCCc
Confidence            99988764 33 44566666444 466 89999999999999999987654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=2.8e-26  Score=192.88  Aligned_cols=213  Identities=16%  Similarity=0.135  Sum_probs=155.8

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV  111 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i  111 (312)
                      .+..+++.+.+..++++++.|++|++||+.+++++..              +  .+...|.+++|+++.  ++.+.++.|
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~--------------~--~~~~~v~~v~~~~~~--~~~~~~~~i  121 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR--------------I--KVDAPVKDLFLSREF--IVVSYGDVI  121 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE--------------E--ECSSCEEEEEECSSE--EEEEETTEE
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE--------------E--ECCCceEEEEEcCCE--EEEEEcCEE
Confidence            4777888887744457788899999999998874322              1  234567777776653  334456667


Q ss_pred             EEEEcCCC-c-----------------------CCCCCcCCcccccCCC----------------CCceEecccCCceee
Q 021484          112 YLFEKNMG-L-----------------------GPSPLSLSPEDLQKRE----------------EPQVYSGHRNSQTVK  151 (312)
Q Consensus       112 ~iwd~~~~-~-----------------------~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~v~  151 (312)
                      ++||+.+. .                       +.....+..|++.+..                ....+.+|...  |.
T Consensus       122 ~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~--v~  199 (355)
T 3vu4_A          122 SVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP--IK  199 (355)
T ss_dssp             EEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSC--EE
T ss_pred             EEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCc--eE
Confidence            77776654 1                       2233444555554433                26778899876  99


Q ss_pred             EEEEecCCCCEEEEeccCce-EEEEeccCCeeEEEee-c-CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC--
Q 021484          152 GVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLVRLMV-G-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP--  226 (312)
Q Consensus       152 ~v~~~s~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~-~-~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~--  226 (312)
                      +++| +|++++|++|+.|++ |++||+++++++..+. + |...|.+++|+|++++|++++.|++|++||++......  
T Consensus       200 ~~~~-s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~  278 (355)
T 3vu4_A          200 MVRL-NRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRH  278 (355)
T ss_dssp             EEEE-CTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSE
T ss_pred             EEEE-CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccc
Confidence            9999 999999999999998 9999999999999998 5 99999999999999999999999999999997653211  


Q ss_pred             -CCC--------------------ChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          227 -LPD--------------------NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       227 -~~~--------------------~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                       +..                    ..........+++++..+++++.|+.+++|++....
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          279 ALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             ETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             cccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence             100                    000001234577888899999999999999987653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.2e-28  Score=225.61  Aligned_cols=198  Identities=10%  Similarity=0.094  Sum_probs=161.4

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      ||...|++++|+|++ ++||+|+.||+|++|+..+.+..              ..  ..|...|.+++|+| +++|+++ 
T Consensus        15 gh~~~V~~lafspdg-~~lAsgs~Dg~I~lw~~~~~~~~--------------~~--~~~~~~V~~l~fsp-g~~L~S~s   76 (902)
T 2oaj_A           15 GMSSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQVEVV--------------IK--LEDRSAIKEMRFVK-GIYLVVIN   76 (902)
T ss_dssp             ECSSCEEEEEEETTT-TEEEEEETTSEEEEECSTTCEEE--------------EE--CSSCCCEEEEEEET-TTEEEEEE
T ss_pred             CCCCCcEEEEECCCC-CEEEEEeCCCEEEEEeCCCcEEE--------------EE--cCCCCCEEEEEEcC-CCEEEEEE
Confidence            488899999999999 89999999999999998766521              11  34678999999999 8888886 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE---
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV---  183 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~---  183 (312)
                      .|+.|++||+.++                +.+..+. +...  |++++| +|++++|++|+.||.|++||+++++..   
T Consensus        77 ~D~~v~lWd~~~~----------------~~~~~~~-~~~~--V~~v~~-sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~  136 (902)
T 2oaj_A           77 AKDTVYVLSLYSQ----------------KVLTTVF-VPGK--ITSIDT-DASLDWMLIGLQNGSMIVYDIDRDQLSSFK  136 (902)
T ss_dssp             TTCEEEEEETTTC----------------SEEEEEE-CSSC--EEEEEC-CTTCSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CcCeEEEEECCCC----------------cEEEEEc-CCCC--EEEEEE-CCCCCEEEEEcCCCcEEEEECCCCccccce
Confidence            6999999999887                5666665 4444  999999 999999999999999999999988764   


Q ss_pred             --------EEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCCCC-CCCCCC------------------hhhhh
Q 021484          184 --------RLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTDF-PPLPDN------------------AEKIM  235 (312)
Q Consensus       184 --------~~~~~~~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~~-~~~~~~------------------~~~~~  235 (312)
                              ..+.+|.+.|.+++|+|++ ..+++++.|++| +||+++++. ..+..+                  ... +
T Consensus       137 i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~-V  214 (902)
T 2oaj_A          137 LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK-V  214 (902)
T ss_dssp             ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCC-E
T ss_pred             eccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCC-e
Confidence                    1235688999999999964 679999999999 999987652 222212                  233 3


Q ss_pred             hhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          236 KANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      ....+++++.++++++.|+.+++||+++..
T Consensus       215 ~~v~fspdg~~lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          215 IQSLYHPNSLHIITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             EEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            555688899999999999999999987653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=1.3e-27  Score=203.82  Aligned_cols=221  Identities=9%  Similarity=0.035  Sum_probs=152.3

Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc--------CCCeEEEe-
Q 021484           36 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--------TSELLISY-  106 (312)
Q Consensus        36 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~l~s~-  106 (312)
                      ..+.+++ .+|++++.|++|++||..+++...          ......+.+|...|.+++|+|        ++++|+++ 
T Consensus        95 ~~~~~~~-~~las~~~d~~v~lw~~~~~~~~~----------~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s  163 (393)
T 4gq1_A           95 NSSPVYS-LFLACVCQDNTVRLIITKNETIIT----------QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG  163 (393)
T ss_dssp             --CCEEE-EEEEEEETTSCEEEEEEETTEEEE----------EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred             eecCCCC-CEEEEEeCCCcEEEEECCCCccce----------eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence            3334444 789999999999999999876321          012233489999999999998        78899997 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                      .|++|+|||+.++                .....+.+|...  +.+++| +|++ .+|++++.|+.|++||+++++....
T Consensus       164 ~D~tv~~Wd~~~~----------------~~~~~~~~~~~~--v~~v~~-~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~  224 (393)
T 4gq1_A          164 DDCTLIIWRLTDE----------------GPILAGYPLSSP--GISVQF-RPSNPNQLIVGERNGNIRIFDWTLNLSAEE  224 (393)
T ss_dssp             TTSEEEEEEEETT----------------EEEEEEEECSSC--EEEEEE-ETTEEEEEEEEETTSEEEEEETTCCC----
T ss_pred             CCCeEEEEECCCC----------------ceeeeecCCCCC--cEEEEE-CCCCCceEEecCCCCEEEEEECCCCccccc
Confidence            5999999999876                566667777765  999999 7876 5899999999999999987764332


Q ss_pred             -------------------------eecCccceEEEEEc-CCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhh----
Q 021484          186 -------------------------MVGDRHVVNQLEPH-PHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKI----  234 (312)
Q Consensus       186 -------------------------~~~~~~~v~~~~~~-p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~----  234 (312)
                                               ..+|...+.++.|+ |+++.+++++.|+++++||+..... ..+..+...+    
T Consensus       225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~  304 (393)
T 4gq1_A          225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN  304 (393)
T ss_dssp             ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------C
T ss_pred             ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence                                     23566778889986 8999999999999999999876542 2222222111    


Q ss_pred             --------------hhhhccCC-CCceeEEecCCceEEEEEecccCccc---------e-eEeecCCCccCCCCCCC
Q 021484          235 --------------MKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTLA---------Y-RERRYNAADFESDEEEG  286 (312)
Q Consensus       235 --------------~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~  286 (312)
                                    ....+..+ ++.++++++.|+.|++||+.+.....         . ..++|++..+++..+++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence                          11111222 44567889999999999987653321         1 25667777776665543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=3.5e-27  Score=198.56  Aligned_cols=234  Identities=11%  Similarity=0.048  Sum_probs=163.5

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.........         .+|..+|++++|+|++ ++|++++.||.|++||+.++++.              
T Consensus        66 i~iw~~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~--------------  121 (368)
T 3mmy_A           66 VRCWEVQDSGQTIPKAQ---------QMHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSSNQAI--------------  121 (368)
T ss_dssp             EEEEEECTTSCEEEEEE---------EECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE--------------
T ss_pred             EEEEEcCCCCceeEEEe---------ccccCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCCCCce--------------
Confidence            57899986332211111         1278899999999988 89999999999999999988632              


Q ss_pred             cccccCCCccEEEEEE--ccCCCeEEEe-cCCcEEEEEcCCCcCCCC-----------------------CcCCcccccC
Q 021484           81 RHLIGKNNIHITGLAY--SNTSELLISY-NDELVYLFEKNMGLGPSP-----------------------LSLSPEDLQK  134 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~--~~~~~~l~s~-~d~~i~iwd~~~~~~~~~-----------------------~~~~~~~~~~  134 (312)
                      .  ...|...|.+++|  +|++.+|+++ .|+.|++||++++.....                       ..+..+++..
T Consensus       122 ~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  199 (368)
T 3mmy_A          122 Q--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN  199 (368)
T ss_dssp             E--EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSS
T ss_pred             e--eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEecc
Confidence            1  1568899999999  8888888886 599999999987631100                       0011111111


Q ss_pred             CCCCceEecccCCceeeEEEEecCCCCE----EEEeccCceEEEEeccCC---eeEEEeecCcc------------ceEE
Q 021484          135 REEPQVYSGHRNSQTVKGVNFFGPNDEY----VMSGSDCGHLFIWKKKGG---KLVRLMVGDRH------------VVNQ  195 (312)
Q Consensus       135 ~~~~~~~~~~~~~~~v~~v~~~s~~~~~----l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~------------~v~~  195 (312)
                      ...............+.++++ .++...    +++++.||.|++|+++..   +.+..+..|..            .|++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  278 (368)
T 3mmy_A          200 QPSEFRRIESPLKHQHRCVAI-FKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNG  278 (368)
T ss_dssp             SCEEEEECCCSCSSCEEEEEE-EECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEE
T ss_pred             ccchhhhccccccCCCceEEE-cccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEE
Confidence            100000000000011444444 333333    999999999999999887   56777777776            7999


Q ss_pred             EEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          196 LEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       196 ~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      ++|+|++++|++++.||.|++||+.+++. ..+..|...+ ....+++++.++++++.|+..+.|++.
T Consensus       279 ~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          279 IAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPI-SACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             EEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCE-EEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             EEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCc-eEEEECCCCCeEEEEeccccccccccc
Confidence            99999999999999999999999998763 5566666665 445588999999999998765555443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.95  E-value=4.8e-26  Score=195.76  Aligned_cols=220  Identities=16%  Similarity=0.259  Sum_probs=174.2

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+++.+....+.           +|...+.++++++   .+|++|+.|+.+++||.....              ..
T Consensus       171 v~iWd~~~~~~~~~~~-----------~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~--------------~~  222 (420)
T 4gga_A          171 VQLWDVQQQKRLRNMT-----------SHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAE--------------HH  222 (420)
T ss_dssp             EEEEETTTTEEEEEEC-----------CCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSS--------------CE
T ss_pred             EEEEEcCCCcEEEEEe-----------CCCCceEEEeeCC---CEEEEEeCCCceeEeeecccc--------------ee
Confidence            5789998765433322           3788999998865   689999999999999988654              22


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ...+.+|...+..+.|+|++.+++++ .|+.+++|+..++..            ....+.....|...  |.+++| +|.
T Consensus       223 ~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~------------~~~~~~~~~~~~~~--V~~~~~-~p~  287 (420)
T 4gga_A          223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG------------GWVPLQTFTQHQGA--VKAVAW-CPW  287 (420)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS------------CSCCSEEECCCSSC--EEEEEE-CTT
T ss_pred             eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccc------------cceeeeeecccCCc--eeeeee-CCC
Confidence            23337899999999999999999986 699999999987521            01234556667755  999999 665


Q ss_pred             C-CEEEE--eccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEccCCCCC-CCCCCCChhh
Q 021484          160 D-EYVMS--GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTD-FPPLPDNAEK  233 (312)
Q Consensus       160 ~-~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~--~d~~i~iwd~~~~~-~~~~~~~~~~  233 (312)
                      + .++++  |+.|+.|++||+.+++++..+..| ..+.++.|+|+++.+++++  .|+.|+|||+.+++ +..+.+|...
T Consensus       288 ~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~  366 (420)
T 4gga_A          288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR  366 (420)
T ss_dssp             CTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC
T ss_pred             cccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCC
Confidence            4 45554  568999999999999999888765 5788999999999987765  79999999998876 4667788887


Q ss_pred             hhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          234 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       234 ~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      +..+ .+++++.++++++.|++|++|++....
T Consensus       367 V~~l-~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          367 VLSL-TMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             EEEE-EECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             EEEE-EEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            7554 578999999999999999999987553

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=7.8e-27  Score=209.74  Aligned_cols=238  Identities=13%  Similarity=0.134  Sum_probs=184.9

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----eecCCCCCCCCcccccccccccCCCcc-EEEEEEcc--CC
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC----HWYSPISSDTPVDTFCPRHLIGKNNIH-ITGLAYSN--TS  100 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~--~~  100 (312)
                      +|...|++++|+|++ ++|++++ ++.|++|++.++    +              .... +.+|... |.+++|+|  ++
T Consensus        16 ~~~~~v~~~~~spdg-~~l~~~~-~~~v~v~~~~~~~~~~~--------------~~~~-~~~h~~~~v~~~~~sp~~~~   78 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTT-NAIAYPC-GKSAFVRCLDDGDSKVP--------------PVVQ-FTGHGSSVVTTVKFSPIKGS   78 (615)
T ss_dssp             CCTTCCCCCEEETTT-TEEEEEE-TTEEEEEECCSSCCSSC--------------SEEE-ECTTTTSCEEEEEECSSTTC
T ss_pred             CccCceeEEEECCCC-CEEEEec-CCeEEEEECCCCCCccc--------------cceE-EecCCCceEEEEEECcCCCC
Confidence            488999999999999 7888887 789999999876    3              2222 2788999 99999999  99


Q ss_pred             CeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC----ceEEEE
Q 021484          101 ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC----GHLFIW  175 (312)
Q Consensus       101 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d----g~v~iw  175 (312)
                      ++|+++ .|+.|++||+.++...        .....+....+..|...  |.+++| +|++++|++++.+    +.|++|
T Consensus        79 ~~l~s~~~dg~v~vw~~~~~~~~--------~~~~~~~~~~~~~~~~~--v~~~~~-s~~~~~l~~~~~~~~~~~~v~~~  147 (615)
T 1pgu_A           79 QYLCSGDESGKVIVWGWTFDKES--------NSVEVNVKSEFQVLAGP--ISDISW-DFEGRRLCVVGEGRDNFGVFISW  147 (615)
T ss_dssp             CEEEEEETTSEEEEEEEEEEGGG--------TEEEEEEEEEEECCSSC--EEEEEE-CTTSSEEEEEECCSSCSEEEEET
T ss_pred             CEEEEecCCCEEEEEeCCCCccc--------ccccccccchhhccccc--EEEEEE-eCCCCEEEEeccCCCCccEEEEE
Confidence            999997 5999999999632000        00000455667777765  999999 9999999999987    788888


Q ss_pred             eccCCeeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCCC-CCCCCChh---hhhhhhccCCC-CceeEE
Q 021484          176 KKKGGKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF-PPLPDNAE---KIMKANKQGRE-DHSRIT  249 (312)
Q Consensus       176 d~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~---~~~~~~~~~~~-~~~l~s  249 (312)
                      |  .++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+.+.+. ..+..|..   .+ ....++++ +.++++
T Consensus       148 d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~  224 (615)
T 1pgu_A          148 D--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV-RDVEFSPDSGEFVIT  224 (615)
T ss_dssp             T--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCE-EEEEECSTTCCEEEE
T ss_pred             E--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceE-EEEEECCCCCCEEEE
Confidence            8  5778889999999999999999998 799999999999999887763 44555555   44 44557888 999999


Q ss_pred             ecCCceEEEEEecccCcccee--------------EeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          250 LTPDVIMHVLRLQRRQTLAYR--------------ERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       250 ~~~d~~i~i~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      ++.|+.+++|++.........              .+. +...+.+...++.+.+++...+.
T Consensus       225 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~  285 (615)
T 1pgu_A          225 VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK  285 (615)
T ss_dssp             EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE
T ss_pred             EeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc
Confidence            999999999997654322111              333 55566666677788888876543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2e-26  Score=192.89  Aligned_cols=194  Identities=7%  Similarity=0.008  Sum_probs=146.8

Q ss_pred             CccceEEEEEcC--CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           29 NSIRLNAIVIDP--RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        29 h~~~v~~~~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      |..+|.+++|+|  ++ ++|++++.||+|++||+++++.              .......|...+.+++|+|++.+|+++
T Consensus       124 ~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~--------------~~~~~~~~~~~i~~~~~~pdg~~lasg  188 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQ--------------YIVHSAKSDVEYSSGVLHKDSLLLALY  188 (343)
T ss_dssp             CSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCE--------------EEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred             CCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcE--------------EEEEecCCCCceEEEEECCCCCEEEEE
Confidence            678899999999  88 8999999999999999998862              121223456679999999999999996


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCC-ceEec-ccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEP-QVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                       .|+.|++||++++                +.. ..+.. |...  |.+++| +|++.+|++++ ++.|++||+++++.+
T Consensus       189 ~~dg~i~iwd~~~~----------------~~~~~~~~~~h~~~--v~~l~f-s~~g~~l~s~~-~~~v~iwd~~~~~~~  248 (343)
T 3lrv_A          189 SPDGILDVYNLSSP----------------DQASSRFPVDEEAK--IKEVKF-ADNGYWMVVEC-DQTVVCFDLRKDVGT  248 (343)
T ss_dssp             CTTSCEEEEESSCT----------------TSCCEECCCCTTSC--EEEEEE-CTTSSEEEEEE-SSBEEEEETTSSTTC
T ss_pred             cCCCEEEEEECCCC----------------CCCccEEeccCCCC--EEEEEE-eCCCCEEEEEe-CCeEEEEEcCCCCcc
Confidence             5999999999987                455 66777 7765  999999 99999999999 559999999988766


Q ss_pred             EEeec---CccceE--EEEEcCCCCeEEEEeC-CCcEEEccCCCCCCCCCCCChhhhhhhhccCC---CCceeEEecCCc
Q 021484          184 RLMVG---DRHVVN--QLEPHPHIPMFATCGI-EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR---EDHSRITLTPDV  254 (312)
Q Consensus       184 ~~~~~---~~~~v~--~~~~~p~~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~d~  254 (312)
                      ..+..   |...+.  +++|+|++++|++++. |+.|++|++...... ..  ... .....+.+   +...+++++.|+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~-~~--~~~-~~~~~~~~~~~~~~~l~~~~~d~  324 (343)
T 3lrv_A          249 LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN-WT--KDE-ESALCLQSDTADFTDMDVVCGDG  324 (343)
T ss_dssp             BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS-EE--EEE-EEECCC----CCCCEEEEEEETT
T ss_pred             eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc-eE--ecC-ceeEecCccccccceeEEEecCC
Confidence            55443   333443  6999999999999998 999999998654321 10  011 12223444   667888899999


Q ss_pred             eEEEEEe
Q 021484          255 IMHVLRL  261 (312)
Q Consensus       255 ~i~i~~~  261 (312)
                      .+.++-.
T Consensus       325 ~~~~~~~  331 (343)
T 3lrv_A          325 GIAAILK  331 (343)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEEe
Confidence            8888753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=1.1e-26  Score=195.35  Aligned_cols=209  Identities=9%  Similarity=0.092  Sum_probs=146.4

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE-Ee
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-SY  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~  106 (312)
                      +|..+|++++|+|++ .+|++|+.++ +++|++.+.+..              .   ..+...+..+++.+++..++ ++
T Consensus        17 ~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~~~~~--------------~---~~~~~~~~~~~~~~~~~~~~~~~   77 (355)
T 3vu4_A           17 HVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHPVAHI--------------M---SQEMRHLSKVRMLHRTNYVAFVT   77 (355)
T ss_dssp             --CCCCCEEEECTTS-SEEEEECSSE-EEEEEETTEEEE--------------E---EEECSCCCEEEECTTSSEEEEEC
T ss_pred             cCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCCccee--------------e---eeecCCeEEEEEcCCCCEEEEEE
Confidence            488999999999999 7999988765 789998876521              1   11112467788888888664 34


Q ss_pred             -cCCcEEEEEcCCCcCC----------------------CCCcCCcccccCC-CCCceEecccCCceeeEEEEecCCCCE
Q 021484          107 -NDELVYLFEKNMGLGP----------------------SPLSLSPEDLQKR-EEPQVYSGHRNSQTVKGVNFFGPNDEY  162 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~----------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~s~~~~~  162 (312)
                       .|+.|++||..++...                      ....+..|++.+. +.+..+..   .  ...+++ ++  .+
T Consensus        78 ~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~--~~~~~~-s~--~~  149 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---F--GGVCEF-SN--GL  149 (355)
T ss_dssp             SSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---E--EEEEEE-ET--TE
T ss_pred             CCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---C--CceEEE-Ec--cE
Confidence             5889999999876200                      0011222222222 22222222   1  222333 33  45


Q ss_pred             EEE--eccCceEEEEeccCCe---------------e-EEEeecCccceEEEEEcCCCCeEEEEeCCCc-EEEccCCCCC
Q 021484          163 VMS--GSDCGHLFIWKKKGGK---------------L-VRLMVGDRHVVNQLEPHPHIPMFATCGIEKT-VKLWAPMPTD  223 (312)
Q Consensus       163 l~~--~~~dg~v~iwd~~~~~---------------~-~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~-i~iwd~~~~~  223 (312)
                      +++  |+.+|.|++||+.+++               + +..+.+|...|++++|+|++++|++++.|++ |++||+++++
T Consensus       150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~  229 (355)
T 3vu4_A          150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV  229 (355)
T ss_dssp             EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred             EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            555  6889999999998765               2 6788899999999999999999999999998 9999999876


Q ss_pred             C-CCCC-C-ChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          224 F-PPLP-D-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       224 ~-~~~~-~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      . ..+. + |...+ ....+++++.++++++.|+.+++|++...
T Consensus       230 ~~~~~~~g~h~~~v-~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          230 LVREFRRGLDRADV-VDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEEEECTTCCSCE-EEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEEEEcCCCCCcE-EEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            4 4454 3 55555 45568899999999999999999998654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=7.2e-27  Score=189.91  Aligned_cols=156  Identities=8%  Similarity=0.009  Sum_probs=119.1

Q ss_pred             CCccceEEEEEcC---CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccC--CCccEEEEEEccCCCe
Q 021484           28 MNSIRLNAIVIDP---RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK--NNIHITGLAYSNTSEL  102 (312)
Q Consensus        28 ~h~~~v~~~~~~p---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~  102 (312)
                      +|+..++.++|+|   ++ .+|++|+.|++|+|||+.++++              ...+..+  +...+.+++|+|+|++
T Consensus       176 ~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk~--------------l~tL~g~~~~v~~v~~vafSpdG~~  240 (356)
T 2w18_A          176 LMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQL--------------LKKMHIDDSYQASVCHKAYSEMGLL  240 (356)
T ss_dssp             ECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCCE--------------EEEEECCC---CCCEEEEEEETTEE
T ss_pred             cCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCcE--------------EEEEcCCCcceeeeEEEEECCCCCE
Confidence            3667778888887   55 7999999999999999999983              2333112  2346778899999986


Q ss_pred             E------------EEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceE-----ecccCCceeeEEEEecCCCCEEE
Q 021484          103 L------------ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-----SGHRNSQTVKGVNFFGPNDEYVM  164 (312)
Q Consensus       103 l------------~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~v~~~s~~~~~l~  164 (312)
                      +            +++ .|++|++||..++                +.+..+     .+|...  +.+..+   ++.+++
T Consensus       241 lvs~s~~~~~w~laSGs~D~tIklWd~~tg----------------k~l~v~~~~~p~Gh~~~--~lsg~~---sg~~lA  299 (356)
T 2w18_A          241 FIVLSHPCAKESESLRSPVFQLIVINPKTT----------------LSVGVMLYCLPPGQAGR--FLEGDV---KDHCAA  299 (356)
T ss_dssp             EEEEC------------CCEEEEEEETTTT----------------EEEEEEEECCCTTCCCC--EEEEEE---ETTEEE
T ss_pred             EEEeccCCCcceeeccCCCcEEEEEECCCC----------------EEEEEEEeeccCCCcce--eEcccc---CCCEEE
Confidence            6            445 3899999999877                454443     244433  444444   388999


Q ss_pred             EeccCceEEEEeccCCeeEEEeecCccceE-EEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          165 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-QLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       165 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                      +++.|++|+|||+.+++++.++.+|...+. .++|+|+|++|++|+.|++|||||+
T Consensus       300 SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          300 AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            999999999999999999999998887655 6899999999999999999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=3.3e-26  Score=189.03  Aligned_cols=244  Identities=12%  Similarity=0.141  Sum_probs=174.0

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcE
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV  111 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i  111 (312)
                      +++|+||+++  +||+| .|++|+|||+.++++...             ....+|...|++++|+|++++|+++ .|+.|
T Consensus        28 ~~~l~WS~~~--~lAvg-~D~tV~iWd~~tg~~~~~-------------~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v   91 (318)
T 4ggc_A           28 LNLVDWSSGN--VLAVA-LDNSVYLWSASSGDILQL-------------LQMEQPGEYISSVAWIKEGNYLAVGTSSAEV   91 (318)
T ss_dssp             CBCEEECTTS--EEEEE-ETTEEEEEETTTCCEEEE-------------EECCSTTCCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ceEEEECCCC--EEEEE-eCCEEEEEECCCCCEEEE-------------EEecCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence            5789999975  77776 599999999999873211             1125788899999999999999997 59999


Q ss_pred             EEEEcCCCcCC------------------------CCCcCCcccc-cCCCCCceEecccCCceeeEEEEecCCCCEEEEe
Q 021484          112 YLFEKNMGLGP------------------------SPLSLSPEDL-QKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  166 (312)
Q Consensus       112 ~iwd~~~~~~~------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~  166 (312)
                      ++|++.++...                        ....+..+.. ........+.+|...  +..+.+ ++++++|+++
T Consensus        92 ~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~l~s~  168 (318)
T 4ggc_A           92 QLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE--VCGLRW-APDGRHLASG  168 (318)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC--EEEEEE-CTTSSEEEEE
T ss_pred             EEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCc--eEEEEE-cCCCCEEEEE
Confidence            99999876410                        0000111111 112334556677755  889998 8999999999


Q ss_pred             ccCceEEEEeccCCee----EEEeecCccceEEEEEcCCCCeE---EEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhc
Q 021484          167 SDCGHLFIWKKKGGKL----VRLMVGDRHVVNQLEPHPHIPMF---ATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANK  239 (312)
Q Consensus       167 ~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~l---~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  239 (312)
                      +.|+.|++||+++++.    ......|.+.|..++++|.+..+   ++++.+++|++||...........+...+.. ..
T Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~-~~  247 (318)
T 4ggc_A          169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-IL  247 (318)
T ss_dssp             ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEE-EE
T ss_pred             ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeee-ee
Confidence            9999999999987653    34555678899999999987653   4566889999999988764333333333333 33


Q ss_pred             cCCCCceeEE--ecCCceEEEEEecccCcc---------ce-eEeecCCCccCCCCCCCeEEEeecCCC
Q 021484          240 QGREDHSRIT--LTPDVIMHVLRLQRRQTL---------AY-RERRYNAADFESDEEEGETYLLGFSDS  296 (312)
Q Consensus       240 ~~~~~~~l~s--~~~d~~i~i~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~  296 (312)
                      +.+.+..+++  ++.|+.+++||+++....         +. ..+.|++..+++...++.|.+|++.+.
T Consensus       248 ~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          248 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             ecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            4555555554  457999999998654322         22 267888888998888999999998654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1.9e-25  Score=190.10  Aligned_cols=247  Identities=7%  Similarity=0.023  Sum_probs=181.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+..            ...+.+++|+|++..++++++.|+.|++||+.++++.              
T Consensus        14 v~v~d~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~--------------   67 (391)
T 1l0q_A           14 ISVIDVTSNKVTATIPV------------GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--------------   67 (391)
T ss_dssp             EEEEETTTTEEEEEEEC------------SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--------------
T ss_pred             EEEEECCCCeEEEEeec------------CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE--------------
Confidence            57999987764444332            2358999999999445578889999999999988732              


Q ss_pred             cccccCCCccEEEEEEccCCCeEE-Eec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLI-SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~-s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                      ..+ .. ...+.+++|+|++++|+ ++. ++.|++||+.++                +....+..+. .  +.+++| +|
T Consensus        68 ~~~-~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~----------------~~~~~~~~~~-~--~~~~~~-s~  125 (391)
T 1l0q_A           68 ATV-PA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN----------------TVAGTVKTGK-S--PLGLAL-SP  125 (391)
T ss_dssp             EEE-EC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----------------EEEEEEECSS-S--EEEEEE-CT
T ss_pred             EEE-EC-CCCccceEECCCCCEEEEEECCCCEEEEEECCCC----------------eEEEEEeCCC-C--cceEEE-CC
Confidence            222 22 23899999999999665 454 799999999887                5655665443 3  899999 99


Q ss_pred             CCCEE-EEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE-EEEeCCCcEEEccCCCCCCCCCCCChhhhhh
Q 021484          159 NDEYV-MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPPLPDNAEKIMK  236 (312)
Q Consensus       159 ~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  236 (312)
                      ++++| ++++.++.|++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||+++++......+...+ .
T Consensus       126 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~  203 (391)
T 1l0q_A          126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAP-S  203 (391)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEE-E
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCc-c
Confidence            99977 688889999999999999988887664 56899999999986 67778999999999887642222222233 3


Q ss_pred             hhccCCCCceeEEec---CCceEEEEEecccCcc---------ceeEeecCCCcc-CCCCCCCeEEEeecCCCC
Q 021484          237 ANKQGREDHSRITLT---PDVIMHVLRLQRRQTL---------AYRERRYNAADF-ESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       237 ~~~~~~~~~~l~s~~---~d~~i~i~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~  297 (312)
                      ...+++++.++++++   .++.+++||+......         ....+.+++..+ .+...++.+.++|...+.
T Consensus       204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence            345677888777776   7899999998654222         122556666656 455667889999887653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.2e-27  Score=219.50  Aligned_cols=184  Identities=13%  Similarity=0.097  Sum_probs=134.6

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||...+.+++|+|++ ++|++|+.|++|++||+.++.+...    .....-....+..+|...|.+++|+|++++||++
T Consensus       432 ~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~~----~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsg  506 (902)
T 2oaj_A          432 KGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQDN----ASFEVNLSRTLNKAKELAVDKISFAAETLELAVS  506 (902)
T ss_dssp             CCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTTT----BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEE
T ss_pred             cCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccCC----ceEEeechhhcCCCCCCceeEEEecCCCCeEEEE
Confidence            4667777778889988 8999999999999999988742100    0000000001113788999999999999999997


Q ss_pred             -cCCcEEEEEcCCCcCC--------CCCcCCc--ccc-------------------cCCCCCceEecccCCceeeEEEEe
Q 021484          107 -NDELVYLFEKNMGLGP--------SPLSLSP--EDL-------------------QKREEPQVYSGHRNSQTVKGVNFF  156 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~--------~~~~~~~--~~~-------------------~~~~~~~~~~~~~~~~~v~~v~~~  156 (312)
                       .|++|++|++.++...        ....+..  .++                   ...+++..+.+|...  |++++| 
T Consensus       507 s~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~--V~svaf-  583 (902)
T 2oaj_A          507 IETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK--TSAINN-  583 (902)
T ss_dssp             ETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS--EEEEEE-
T ss_pred             ecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc--EEEEEe-
Confidence             5999999999765210        0000000  000                   001235667778866  999999 


Q ss_pred             cCCCCEEEEeccCceEEEEeccCCeeEE--E---ee-cCccceEEEEEc-----CCC---CeEEEEeCCCcEEEccC
Q 021484          157 GPNDEYVMSGSDCGHLFIWKKKGGKLVR--L---MV-GDRHVVNQLEPH-----PHI---PMFATCGIEKTVKLWAP  219 (312)
Q Consensus       157 s~~~~~l~~~~~dg~v~iwd~~~~~~~~--~---~~-~~~~~v~~~~~~-----p~~---~~l~t~~~d~~i~iwd~  219 (312)
                      +|+| +|++|+.|++|++||++++..+.  .   +. +|...|++++|+     |+|   ++|++++.|++|++||+
T Consensus       584 SpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          584 SNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             CBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             cCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            9999 99999999999999998877654  2   32 788899999999     886   78999999999999998

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=1.2e-24  Score=187.64  Aligned_cols=250  Identities=10%  Similarity=0.048  Sum_probs=178.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+.....      .+|...|.+++|+|++ .++++++.|+.|++||+.+++.              .
T Consensus       146 i~~~d~~~g~~~~~~~~~~~------~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~--------------~  204 (433)
T 3bws_A          146 MDVLDINSGQTVRLSPPEKY------KKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAY--------------K  204 (433)
T ss_dssp             EEEEETTTCCEEEECCCHHH------HTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCE--------------E
T ss_pred             EEEEECCCCeEeeecCcccc------cccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceE--------------E
Confidence            57888887654432222111      2478899999999988 8999999999999999988762              2


Q ss_pred             cccccCCCccEEEEEEccCCCeE-EEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELL-ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                      ..+ ..|...+.+++|+|+++.+ +++ .++.|++||+.++                +....+..+   ..+.+++| +|
T Consensus       205 ~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~----------------~~~~~~~~~---~~~~~~~~-~~  263 (433)
T 3bws_A          205 ATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK----------------LEIRKTDKI---GLPRGLLL-SK  263 (433)
T ss_dssp             EEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT----------------EEEEECCCC---SEEEEEEE-CT
T ss_pred             EEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC----------------cEEEEecCC---CCceEEEE-cC
Confidence            222 4677889999999999866 455 5999999999876                455554443   23899999 99


Q ss_pred             CCCEEEEec--------cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCCCCCCC
Q 021484          159 NDEYVMSGS--------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPD  229 (312)
Q Consensus       159 ~~~~l~~~~--------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~  229 (312)
                      ++++|++++        .||.|++||+.+++.+..+ .|...+..++|+|+++. +++++.|+.|++||+.+++......
T Consensus       264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~  342 (433)
T 3bws_A          264 DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP  342 (433)
T ss_dssp             TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence            999999888        4889999999999887665 35568899999999986 5666899999999998775422111


Q ss_pred             ChhhhhhhhccCCCCceeEEecC---------------CceEEEEEecccCccce---------eEeecCCCccCCC-CC
Q 021484          230 NAEKIMKANKQGREDHSRITLTP---------------DVIMHVLRLQRRQTLAY---------RERRYNAADFESD-EE  284 (312)
Q Consensus       230 ~~~~~~~~~~~~~~~~~l~s~~~---------------d~~i~i~~~~~~~~~~~---------~~~~~~~~~~~~~-~~  284 (312)
                      +...+ ....+++++.++++++.               |+.+++||+.+......         ..+.|++..+... ..
T Consensus       343 ~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  421 (433)
T 3bws_A          343 VFDKP-NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFL  421 (433)
T ss_dssp             CSSSE-EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETT
T ss_pred             CCCCC-CeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECC
Confidence            22223 34456777777766655               56999999865432211         2445555555433 33


Q ss_pred             CCeEEEeecC
Q 021484          285 EGETYLLGFS  294 (312)
Q Consensus       285 ~~~v~~~~~~  294 (312)
                      ++.+.+++++
T Consensus       422 d~~i~v~~~~  431 (433)
T 3bws_A          422 DHQIRVYRRD  431 (433)
T ss_dssp             TTEEEEEEET
T ss_pred             CCeEEEEEec
Confidence            5666666653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.93  E-value=1e-23  Score=179.35  Aligned_cols=213  Identities=12%  Similarity=0.101  Sum_probs=160.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+..            ...+.+++|+|++..++++++.++.|++||+.+++..              
T Consensus        56 i~v~d~~~~~~~~~~~~------------~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~--------------  109 (391)
T 1l0q_A           56 VSIIDTATNNVIATVPA------------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA--------------  109 (391)
T ss_dssp             EEEEETTTTEEEEEEEC------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--------------
T ss_pred             EEEEECCCCeEEEEEEC------------CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEE--------------
Confidence            57899887664443332            2379999999999445566667899999999988732              


Q ss_pred             cccccCCCccEEEEEEccCCCeE-EEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELL-ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                      ..+ . +...+.+++|+|+++.+ +++ .++.|++||+.++                +....+..+. .  +.+++| +|
T Consensus       110 ~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~----------------~~~~~~~~~~-~--~~~~~~-~~  167 (391)
T 1l0q_A          110 GTV-K-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----------------AVINTVSVGR-S--PKGIAV-TP  167 (391)
T ss_dssp             EEE-E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----------------EEEEEEECCS-S--EEEEEE-CT
T ss_pred             EEE-e-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC----------------cEEEEEecCC-C--cceEEE-CC
Confidence            111 2 23468999999999966 565 4999999999887                5666666543 2  789999 99


Q ss_pred             CCCEE-EEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEccCCCCCC-CCCCCChhh
Q 021484          159 NDEYV-MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTDF-PPLPDNAEK  233 (312)
Q Consensus       159 ~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~~~-~~~~~~~~~  233 (312)
                      ++++| ++++.++.|++||+++++.+..+. +...+.+++|+|+++++++++   .++.|++||+.+++. ..+..+. .
T Consensus       168 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~  245 (391)
T 1l0q_A          168 DGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-D  245 (391)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-S
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-C
Confidence            99887 677889999999999998887776 456789999999999988887   689999999987753 2332222 2


Q ss_pred             hhhhhccCCCCcee-EEecCCceEEEEEeccc
Q 021484          234 IMKANKQGREDHSR-ITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       234 ~~~~~~~~~~~~~l-~s~~~d~~i~i~~~~~~  264 (312)
                      + ....+++++..+ ++++.|+.+++||+...
T Consensus       246 ~-~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          246 P-AGIAVTPDGKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             E-EEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             c-cEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence            2 334467777666 78899999999998754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.92  E-value=1.6e-23  Score=180.45  Aligned_cols=202  Identities=11%  Similarity=-0.000  Sum_probs=157.3

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE  109 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~  109 (312)
                      ..+.+++|+|++ .++++++.++.|++||+.+++....          .......+|...|.+++|++++.+++++ .|+
T Consensus       123 ~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  191 (433)
T 3bws_A          123 FQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRL----------SPPEKYKKKLGFVETISIPEHNELWVSQMQAN  191 (433)
T ss_dssp             SCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEE----------CCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred             CCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeee----------cCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence            346689999955 7888888999999999998864211          1111225788899999999999988887 599


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE-EeccCceEEEEeccCCeeEEEeec
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGGKLVRLMVG  188 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~  188 (312)
                      .|++||+.++                +....+..+...  +.+++| +|++++++ +++.++.|++||+++++.+..+..
T Consensus       192 ~v~~~d~~~~----------------~~~~~~~~~~~~--~~~~~~-~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~  252 (433)
T 3bws_A          192 AVHVFDLKTL----------------AYKATVDLTGKW--SKILLY-DPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK  252 (433)
T ss_dssp             EEEEEETTTC----------------CEEEEEECSSSS--EEEEEE-ETTTTEEEEEETTTTEEEEEETTTTEEEEECCC
T ss_pred             EEEEEECCCc----------------eEEEEEcCCCCC--eeEEEE-cCCCCEEEEEecCCCcEEEEECCCCcEEEEecC
Confidence            9999999887                677777777755  999999 89998875 555899999999999998888875


Q ss_pred             CccceEEEEEcCCCCeEEEEe--------CCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCc-eeEEecCCceEEEE
Q 021484          189 DRHVVNQLEPHPHIPMFATCG--------IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDH-SRITLTPDVIMHVL  259 (312)
Q Consensus       189 ~~~~v~~~~~~p~~~~l~t~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~i~  259 (312)
                      + ..+.+++|+|+++.+++++        .|+.|++||+.+++......+...+ ....+++++. ++++++.++.+++|
T Consensus       253 ~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~v~v~  330 (433)
T 3bws_A          253 I-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK-RHIVSGNTENKIYVSDMCCSKIEVY  330 (433)
T ss_dssp             C-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECE-EEEEECSSTTEEEEEETTTTEEEEE
T ss_pred             C-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCc-ceEEECCCCCEEEEEecCCCEEEEE
Confidence            5 4589999999999988887        5889999999887643322233333 2334667664 56777999999999


Q ss_pred             Eeccc
Q 021484          260 RLQRR  264 (312)
Q Consensus       260 ~~~~~  264 (312)
                      ++...
T Consensus       331 d~~~~  335 (433)
T 3bws_A          331 DLKEK  335 (433)
T ss_dssp             ETTTT
T ss_pred             ECCCC
Confidence            98754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=8.5e-23  Score=175.09  Aligned_cols=196  Identities=10%  Similarity=0.105  Sum_probs=150.9

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCC---eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE-
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDE---YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-  104 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-  104 (312)
                      |...+.+++|+|++ +.|++++.++   .|++||+.+++.               ..+ ..|...+.+++|+|+|+.|+ 
T Consensus       177 ~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~---------------~~l-~~~~~~~~~~~~spdg~~la~  239 (415)
T 2hqs_A          177 SPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAV---------------RQV-ASFPRHNGAPAFSPDGSKLAF  239 (415)
T ss_dssp             ESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCE---------------EEE-ECCSSCEEEEEECTTSSEEEE
T ss_pred             CCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCcE---------------EEe-ecCCCcccCEEEcCCCCEEEE
Confidence            56789999999999 7888888775   999999998762               111 45677899999999999776 


Q ss_pred             Eec-CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEecc
Q 021484          105 SYN-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKK  178 (312)
Q Consensus       105 s~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~  178 (312)
                      ++. ++  .|++||+.++                + ...+..+...  +.+++| +|++++|++++. ++  .|++||+.
T Consensus       240 ~~~~~g~~~i~~~d~~~~----------------~-~~~l~~~~~~--~~~~~~-spdg~~l~~~s~~~g~~~i~~~d~~  299 (415)
T 2hqs_A          240 ALSKTGSLNLYVMDLASG----------------Q-IRQVTDGRSN--NTEPTW-FPDSQNLAFTSDQAGRPQVYKVNIN  299 (415)
T ss_dssp             EECTTSSCEEEEEETTTC----------------C-EEECCCCSSC--EEEEEE-CTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             EEecCCCceEEEEECCCC----------------C-EEeCcCCCCc--ccceEE-CCCCCEEEEEECCCCCcEEEEEECC
Confidence            443 44  4999999876                3 3555666644  899999 999999888776 44  78888998


Q ss_pred             CCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCc-
Q 021484          179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDV-  254 (312)
Q Consensus       179 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-  254 (312)
                      +++. ..+..+...+..++|+|+|++|++++.+   ..|++||+.+++...+..+.  ......+++++..++.++.++ 
T Consensus       300 ~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~--~~~~~~~spdg~~l~~~s~~~~  376 (415)
T 2hqs_A          300 GGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF--LDETPSLAPNGTMVIYSSSQGM  376 (415)
T ss_dssp             SSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS--SCEEEEECTTSSEEEEEEEETT
T ss_pred             CCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC--CcCCeEEcCCCCEEEEEEcCCC
Confidence            7764 4455577788999999999998888754   58999999988765555443  334456788888888877766 


Q ss_pred             --eEEEEEeccc
Q 021484          255 --IMHVLRLQRR  264 (312)
Q Consensus       255 --~i~i~~~~~~  264 (312)
                        .+++|++...
T Consensus       377 ~~~l~~~d~~g~  388 (415)
T 2hqs_A          377 GSVLNLVSTDGR  388 (415)
T ss_dssp             EEEEEEEETTSC
T ss_pred             ccEEEEEECCCC
Confidence              7888887643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=3e-23  Score=177.87  Aligned_cols=264  Identities=11%  Similarity=0.004  Sum_probs=179.5

Q ss_pred             Ceeecc--cCccceeeEEecccccCCcCCCCccceEEEEEcC--------------CCCcEEEEEeCC------CeEEEE
Q 021484            1 MWQFDL--RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP--------------RNPNYFAVGGSD------EYARVY   58 (312)
Q Consensus         1 v~~wd~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--------------~~~~~l~~~~~d------g~i~iw   58 (312)
                      |+|||+  .+.+.......         .+|...+..+++++              .+ ..++.++.+      +.|++|
T Consensus        95 i~lwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~-~~l~~~s~~~~~~~~~~i~i~  164 (415)
T 2hqs_A           95 YQLVDTGGAPGTVLAQNSY---------KVNKQWLRYAGHTASDEVFEKLTGIKGAFR-TRIAYVVQTNGGQFPYELRVS  164 (415)
T ss_dssp             EEEEECSSSTTCEEEEEEE---------EECGGGHHHHHHHHHHHHHHHHHSSCCCTT-CEEEEEEECSSSSCCEEEEEE
T ss_pred             EEEEeCCCCCCCEEeeeEE---------EcChhHHHHHHHHHHHHHHHHHcCCCCcCC-CEEEEEEecCCCCccceEEEE
Confidence            578999  66653211111         12555666666664              14 355555443      799999


Q ss_pred             EccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC---cEEEEEcCCCcCCCCCcCCcccccC
Q 021484           59 DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE---LVYLFEKNMGLGPSPLSLSPEDLQK  134 (312)
Q Consensus        59 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~---~i~iwd~~~~~~~~~~~~~~~~~~~  134 (312)
                      |+....               ...+ ..|...+.+++|+|+|+.|+++ .++   .|++||+.++               
T Consensus       165 d~~g~~---------------~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg---------------  213 (415)
T 2hqs_A          165 DYDGYN---------------QFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---------------  213 (415)
T ss_dssp             ETTSCS---------------CEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---------------
T ss_pred             cCCCCC---------------CEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC---------------
Confidence            997542               2222 5678899999999999988886 353   8999999886               


Q ss_pred             CCCCceEecccCCceeeEEEEecCCCCEEE-EeccCc--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC-
Q 021484          135 REEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-  210 (312)
Q Consensus       135 ~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~-  210 (312)
                       +. ..+..+...  +.+++| +|+|++|+ +++.++  .|++||+.+++. ..+..|...+.+++|+|+|+.|++++. 
T Consensus       214 -~~-~~l~~~~~~--~~~~~~-spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~  287 (415)
T 2hqs_A          214 -AV-RQVASFPRH--NGAPAF-SPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQ  287 (415)
T ss_dssp             -CE-EEEECCSSC--EEEEEE-CTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECT
T ss_pred             -cE-EEeecCCCc--ccCEEE-cCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECC
Confidence             33 456666654  999999 99999887 666655  499999998876 567778889999999999999888875 


Q ss_pred             CC--cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC---ceEEEEEecccCcc--------ceeEeecCCC
Q 021484          211 EK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD---VIMHVLRLQRRQTL--------AYRERRYNAA  277 (312)
Q Consensus       211 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~i~~~~~~~~~--------~~~~~~~~~~  277 (312)
                      ++  .|.+||+.+++...+..+...+ ....+++++.+++..+.+   ..+++|++......        ....+.|++.
T Consensus       288 ~g~~~i~~~d~~~~~~~~l~~~~~~~-~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~  366 (415)
T 2hqs_A          288 AGRPQVYKVNINGGAPQRITWEGSQN-QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGT  366 (415)
T ss_dssp             TSSCEEEEEETTSSCCEECCCSSSEE-EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSS
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCcc-cCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCC
Confidence            45  6778898887765444444333 334578888888877654   68999998654321        1126677777


Q ss_pred             ccCCCCCCC---eEEEeecCCCCCCC--CCCCceeeeecC
Q 021484          278 DFESDEEEG---ETYLLGFSDSDASS--EGGGNQRECIIS  312 (312)
Q Consensus       278 ~~~~~~~~~---~v~~~~~~~~~~~~--~~~~~~~~~~~~  312 (312)
                      .+.....++   .+++++...+....  ...+.-.++.||
T Consensus       367 ~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~  406 (415)
T 2hqs_A          367 MVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS  406 (415)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEEC
T ss_pred             EEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccc
Confidence            666554443   78999986543222  222555555543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=2.1e-22  Score=173.39  Aligned_cols=223  Identities=12%  Similarity=0.067  Sum_probs=148.8

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCC-CCCCcccccccccccCCCccEEEEEEccCCCeEE----
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS-SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI----  104 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~----  104 (312)
                      ...++.+++++++ .++++++.++ +++|+........... ....+..+..... ..+...|.+++|+|+|++|+    
T Consensus        36 ~~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~lav~~~  112 (434)
T 2oit_A           36 KERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNLTLSACMM  112 (434)
T ss_dssp             CSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSCEEEEEEE
T ss_pred             CCCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcCCCCEEEEEEe
Confidence            4468899999988 6888888887 9998875322110000 0011111111111 23567899999999999888    


Q ss_pred             Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccCCee
Q 021484          105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKL  182 (312)
Q Consensus       105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~  182 (312)
                      ++ .|+.|++||+.+........     .........+.+|...  |.+++| +|+ +++|++++.||+|++||+++++.
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~-----~~~~~~~~~~~~h~~~--V~~v~~-~p~~~~~las~s~Dg~v~iwD~~~~~~  184 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQ-----KRPFAYHKLLKDAGGM--VIDMKW-NPTVPSMVAVCLADGSIAVLQVTETVK  184 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSS-----CCCSEEEECCCSGGGS--EEEEEE-CSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred             ccCCCceEEEEEccccccCCcCC-----cceeeeeeccCCCCCc--eEEEEE-CCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence            65 49999999986531000000     0000112344567755  999999 887 88999999999999999999887


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCC-------ChhhhhhhhccCCCCceeEEec-CC-
Q 021484          183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD-------NAEKIMKANKQGREDHSRITLT-PD-  253 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~s~~-~d-  253 (312)
                      +....+|...|.+++|+|+|++|++++.||+|++||++......+..       |...+... .|.++..++++.+ .+ 
T Consensus       185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v-~w~~~~~~l~~~~~~dg  263 (434)
T 2oit_A          185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDV-LWIGTYVFAIVYAAADG  263 (434)
T ss_dssp             EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEE-EEEETTEEEEEEEETTC
T ss_pred             eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEE-EEecCceEEEEEccCCC
Confidence            77777888999999999999999999999999999998332211111       11234333 3555666664433 33 


Q ss_pred             -----ceEEEEEeccc
Q 021484          254 -----VIMHVLRLQRR  264 (312)
Q Consensus       254 -----~~i~i~~~~~~  264 (312)
                           ..+++|++...
T Consensus       264 ~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          264 TLETSPDVVMALLPKK  279 (434)
T ss_dssp             CSSSCCEEEEEECCCT
T ss_pred             ccCCCCceEEEEeccC
Confidence                 23889998754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=1.3e-20  Score=153.46  Aligned_cols=215  Identities=9%  Similarity=0.061  Sum_probs=149.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeecCCCCCCCCccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFC   79 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~   79 (312)
                      |++||+.+.+...+..            |...|.+++|+|++ ++|++++ ++.|++||+.+ ++..             
T Consensus        24 i~~~d~~~~~~~~~~~------------~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~-------------   76 (297)
T 2ojh_A           24 IEIFNIRTRKMRVVWQ------------TPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSPE-------------   76 (297)
T ss_dssp             EEEEETTTTEEEEEEE------------ESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSCE-------------
T ss_pred             EEEEeCCCCceeeecc------------CCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCce-------------
Confidence            5788887765433222            46679999999999 7888876 78999999988 6521             


Q ss_pred             ccccccCC-CccEEEEEEccCCCeEEEec---CCcEEEE--EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEE
Q 021484           80 PRHLIGKN-NIHITGLAYSNTSELLISYN---DELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  153 (312)
Q Consensus        80 ~~~~~~~~-~~~i~~~~~~~~~~~l~s~~---d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v  153 (312)
                        .+...+ ...+.+++|+|++++|+++.   ++...+|  ++.++                 ....+..+. .  +..+
T Consensus        77 --~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~-----------------~~~~~~~~~-~--~~~~  134 (297)
T 2ojh_A           77 --KVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG-----------------TPRLMTKNL-P--SYWH  134 (297)
T ss_dssp             --ECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC-----------------CCEECCSSS-S--EEEE
T ss_pred             --EeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC-----------------ceEEeecCC-C--ccce
Confidence              111233 46678899999999887753   3445555  44443                 233333332 2  7888


Q ss_pred             EEecCCCCEEE-EeccCceEEEEeccC-CeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCC--CCCCCCCC
Q 021484          154 NFFGPNDEYVM-SGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPM--PTDFPPLP  228 (312)
Q Consensus       154 ~~~s~~~~~l~-~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~--~~~~~~~~  228 (312)
                      +| +|++++|+ ++..++.+.+|+++. +.....+..+...+.+++|+|+++.++.++ .++.+++|++.  +.....+.
T Consensus       135 ~~-spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~  213 (297)
T 2ojh_A          135 GW-SPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT  213 (297)
T ss_dssp             EE-CTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred             EE-CCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence            99 99999887 778899999998542 233456667778899999999999877666 58999999875  34444454


Q ss_pred             CChhhhhhhhccCCCCceeEEecCC-----------ceEEEEEecccCc
Q 021484          229 DNAEKIMKANKQGREDHSRITLTPD-----------VIMHVLRLQRRQT  266 (312)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~s~~~d-----------~~i~i~~~~~~~~  266 (312)
                      .+...+ ....+++++.+++.++.+           ..+++|++.....
T Consensus       214 ~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          214 DSAYGD-WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             CCSEEE-EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             cCCccc-CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            444333 334578888888877665           5699999876543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=6.5e-21  Score=164.06  Aligned_cols=169  Identities=9%  Similarity=0.063  Sum_probs=126.8

Q ss_pred             CccceEEEEEcCCCCcEEE----EEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeE
Q 021484           29 NSIRLNAIVIDPRNPNYFA----VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELL  103 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~----~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l  103 (312)
                      |...|++++|+|++ ++|+    +|+.|+.|++||+.+.....    ......+.....+.+|...|.+++|+|+ +.+|
T Consensus        91 ~~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  165 (434)
T 2oit_A           91 MKFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEA----KQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMV  165 (434)
T ss_dssp             CSSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTT----CSSCCCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred             CCCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCC----cCCcceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence            56679999999999 6777    78899999999997651000    0000001112333678999999999998 6788


Q ss_pred             EEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021484          104 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  182 (312)
Q Consensus       104 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~  182 (312)
                      +++ .|++|++||++++                .......+|...  |.+++| +|++++|++|+.||.|++||++ ++.
T Consensus       166 as~s~Dg~v~iwD~~~~----------------~~~~~~~~~~~~--v~~v~w-spdg~~lasgs~dg~v~iwd~~-~~~  225 (434)
T 2oit_A          166 AVCLADGSIAVLQVTET----------------VKVCATLPSTVA--VTSVCW-SPKGKQLAVGKQNGTVVQYLPT-LQE  225 (434)
T ss_dssp             EEEETTSCEEEEEESSS----------------EEEEEEECGGGC--EEEEEE-CTTSSCEEEEETTSCEEEECTT-CCE
T ss_pred             EEEECCCeEEEEEcCCC----------------cceeeccCCCCc--eeEEEE-cCCCCEEEEEcCCCcEEEEccC-Ccc
Confidence            886 5999999999876                444455566655  999999 9999999999999999999998 666


Q ss_pred             EEEeecC-------ccceEEEEEcCCCCeEEE-EeCCCc------EEEccCCCC
Q 021484          183 VRLMVGD-------RHVVNQLEPHPHIPMFAT-CGIEKT------VKLWAPMPT  222 (312)
Q Consensus       183 ~~~~~~~-------~~~v~~~~~~p~~~~l~t-~~~d~~------i~iwd~~~~  222 (312)
                      ...+..|       ...|.+++|++++.++++ .+.||.      +++|++...
T Consensus       226 ~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          226 KKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            6655443       237999999998887654 334533      899998765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=5.2e-20  Score=154.06  Aligned_cols=255  Identities=6%  Similarity=0.027  Sum_probs=167.9

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |.+||+.+.+....+..            ...+..++|+|++..++++...++.|.+||..+++............    
T Consensus        71 v~~~d~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----  134 (353)
T 3vgz_A           71 VYRLDPVTLEVTQAIHN------------DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR----  134 (353)
T ss_dssp             EEEECTTTCCEEEEEEE------------SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC----
T ss_pred             EEEEcCCCCeEEEEEec------------CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc----
Confidence            45777776654444432            22467899999995466666778999999999887432211100000    


Q ss_pred             cccccCCCccEEEEEEccCCCeEEE-e-c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLIS-Y-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  157 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s-~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s  157 (312)
                        ........+..++|+|+++.++. . . ++.|.+||..++                +....+..+...  +.+++| +
T Consensus       135 --~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~----------------~~~~~~~~~~~~--~~~~~~-s  193 (353)
T 3vgz_A          135 --TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI----------------KLKTAIQNTGKM--STGLAL-D  193 (353)
T ss_dssp             --CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT----------------EEEEEECCCCTT--CCCCEE-E
T ss_pred             --ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC----------------ceEEEecCCCCc--cceEEE-C
Confidence              00001123688999999986555 3 2 788999999877                555555534433  788898 9


Q ss_pred             CCCCEEEEeccCceEEEEeccCCeeEEEeec----CccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCCC-CCCCCCh
Q 021484          158 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG----DRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDF-PPLPDNA  231 (312)
Q Consensus       158 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~-~~~~~~~  231 (312)
                      |++++|++++.++.|.+||+.+++.+..+..    +...+..++|+|+++.++.++ .++.|.+||+.+++. ..+....
T Consensus       194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  273 (353)
T 3vgz_A          194 SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE  273 (353)
T ss_dssp             TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence            9999999999999999999999998877764    455678899999999866665 459999999988764 2221111


Q ss_pred             hhhhhhhccCCCCc-eeEEecCCceEEEEEecccCccceeEeecCCCccCCCCCCCeEEEeecCC
Q 021484          232 EKIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSD  295 (312)
Q Consensus       232 ~~~~~~~~~~~~~~-~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  295 (312)
                       .  ....+++++. ++++...++.+.+||+.+...............+....+...+|+...+.
T Consensus       274 -~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          274 -S--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             -C--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred             -C--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence             1  2234566766 55666678999999987664433332222223344444554577766543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=8.6e-20  Score=151.55  Aligned_cols=249  Identities=6%  Similarity=-0.054  Sum_probs=162.6

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+..           +...+ .++|+|++..+++++..++.|.+||+.++++              .
T Consensus        22 v~~~d~~~~~~~~~~~~-----------~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--------------~   75 (331)
T 3u4y_A           22 ISFFSTDTLEILNQITL-----------GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--------------K   75 (331)
T ss_dssp             EEEEETTTCCEEEEEEC-----------CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--------------E
T ss_pred             EEEEeCcccceeeeEEc-----------cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--------------e
Confidence            57889887765444443           23345 9999999943555555589999999998762              0


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEec-C-C--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISYN-D-E--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  156 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~-d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  156 (312)
                      ...+..+..+..+++|+|+|++++++. + +  .|++||+.++                +....+..+. .  ..+++| 
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~----------------~~~~~~~~~~-~--~~~~~~-  135 (331)
T 3u4y_A           76 VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN----------------KFISTIPIPY-D--AVGIAI-  135 (331)
T ss_dssp             EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT----------------EEEEEEECCT-T--EEEEEE-
T ss_pred             EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC----------------CeEEEEECCC-C--ccceEE-
Confidence            111133444444599999999887654 3 3  8999999877                5555555433 2  689999 


Q ss_pred             cCCCCEEEEe-ccCce-EEEEeccCCeeEE----EeecCccceEEEEEcCCCCeEE-EEeCCCcEEEccCCCCCC---C-
Q 021484          157 GPNDEYVMSG-SDCGH-LFIWKKKGGKLVR----LMVGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDF---P-  225 (312)
Q Consensus       157 s~~~~~l~~~-~~dg~-v~iwd~~~~~~~~----~~~~~~~~v~~~~~~p~~~~l~-t~~~d~~i~iwd~~~~~~---~-  225 (312)
                      +|++++|+++ ..++. |.+|++.....+.    ........+..++|+|++++++ ++..++.|++||+.+++.   . 
T Consensus       136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~  215 (331)
T 3u4y_A          136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLN  215 (331)
T ss_dssp             CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEE
T ss_pred             CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceee
Confidence            9999866555 45577 9999987543321    1123345678999999999754 445789999999987764   2 


Q ss_pred             CCCCChhhhhhhhccCCCCceeE-EecCCceEEEEEecccCc------c---------ce----eEeecCCCccC-CCCC
Q 021484          226 PLPDNAEKIMKANKQGREDHSRI-TLTPDVIMHVLRLQRRQT------L---------AY----RERRYNAADFE-SDEE  284 (312)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~i~~~~~~~~------~---------~~----~~~~~~~~~~~-~~~~  284 (312)
                      .+. .... .....+++++++++ +...++.+.+|++.+...      .         .+    ..+++++..+. +..+
T Consensus       216 ~~~-~~~~-~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  293 (331)
T 3u4y_A          216 AVG-TNNL-PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI  293 (331)
T ss_dssp             EEE-CSSC-CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred             ecc-CCCC-CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC
Confidence            222 1122 23344778888655 445678899999765432      0         01    14555665553 3455


Q ss_pred             CCeEEEeecCCCC
Q 021484          285 EGETYLLGFSDSD  297 (312)
Q Consensus       285 ~~~v~~~~~~~~~  297 (312)
                      ++.+.+++++...
T Consensus       294 ~~~v~v~d~~~~~  306 (331)
T 3u4y_A          294 SRELKVFTISGKV  306 (331)
T ss_dssp             TTEEEEEETTSCE
T ss_pred             CCcEEEEEecCCc
Confidence            6678888886654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.85  E-value=2.1e-19  Score=149.60  Aligned_cols=202  Identities=12%  Similarity=0.174  Sum_probs=134.3

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCC-CeEEEEEcc--CCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSD-EYARVYDIR--KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      |...+.+++|+|++ ++|++++.+ +.|++|++.  +++..            ....+ ..+ ..+..++|+|++++|++
T Consensus        36 ~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~------------~~~~~-~~~-~~~~~~~~s~dg~~l~~  100 (343)
T 1ri6_A           36 VPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALT------------FAAES-ALP-GSLTHISTDHQGQFVFV  100 (343)
T ss_dssp             CSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEE------------EEEEE-ECS-SCCSEEEECTTSSEEEE
T ss_pred             cCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCcee------------ecccc-ccC-CCCcEEEEcCCCCEEEE
Confidence            45578899999999 667777665 999999997  44321            01111 222 26789999999996655


Q ss_pred             -ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEEeccC-Ce
Q 021484          106 -YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKG-GK  181 (312)
Q Consensus       106 -~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~~-~~  181 (312)
                       +. ++.|++||+..+.             ..+....+..+.   .+.+++| +|+++++++++ .++.|.+||+.+ ++
T Consensus       101 ~~~~~~~i~~~d~~~~~-------------~~~~~~~~~~~~---~~~~~~~-s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A          101 GSYNAGNVSVTRLEDGL-------------PVGVVDVVEGLD---GCHSANI-SPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             EETTTTEEEEEEEETTE-------------EEEEEEEECCCT---TBCCCEE-CTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             EecCCCeEEEEECCCCc-------------cccccccccCCC---CceEEEE-CCCCCEEEEecCCCCEEEEEEecCCCc
Confidence             44 8899999994220             002333333322   2788999 99999888777 899999999987 65


Q ss_pred             eEE----Eeec-CccceEEEEEcCCCCeEEEEe-CCCcEEEccCCC--CCCC------CCCCC-h-hhhhhhhccCCCCc
Q 021484          182 LVR----LMVG-DRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMP--TDFP------PLPDN-A-EKIMKANKQGREDH  245 (312)
Q Consensus       182 ~~~----~~~~-~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~--~~~~------~~~~~-~-~~~~~~~~~~~~~~  245 (312)
                      ...    .+.. ....+..++|+|+++++++++ .++.|++|++..  +...      .++.. . ........+++++.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~  243 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR  243 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence            432    2232 234788999999999765554 889999999954  3221      11111 0 01111244677776


Q ss_pred             eeE-EecCCceEEEEEec
Q 021484          246 SRI-TLTPDVIMHVLRLQ  262 (312)
Q Consensus       246 ~l~-s~~~d~~i~i~~~~  262 (312)
                      +++ +...++.+++|++.
T Consensus       244 ~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          244 HLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEEEETTTTEEEEEEEC
T ss_pred             EEEEEecCCCEEEEEEEc
Confidence            665 66689999999987

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.85  E-value=3.5e-19  Score=157.38  Aligned_cols=249  Identities=10%  Similarity=0.078  Sum_probs=170.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEc--cCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDI--RKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~   78 (312)
                      |.+||..+.+....+..          +|.  +..++|+|++ ++|++++.|++|++||+  .++++             
T Consensus       161 V~v~D~~t~~~~~~i~~----------g~~--~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~-------------  214 (543)
T 1nir_A          161 IALVDGDSKKIVKVIDT----------GYA--VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTK-------------  214 (543)
T ss_dssp             EEEEETTTCCEEEEEEC----------STT--EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEE-------------
T ss_pred             EEEEECCCceEEEEEec----------Ccc--cceEEECCCC-CEEEEECCCCeEEEEECcCCCCcE-------------
Confidence            46888887765444432          122  7899999999 89999999999999999  66652             


Q ss_pred             cccccccCCCccEEEEEEcc----CCCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc--------
Q 021484           79 CPRHLIGKNNIHITGLAYSN----TSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--------  144 (312)
Q Consensus        79 ~~~~~~~~~~~~i~~~~~~~----~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  144 (312)
                       ...+ . +...+..++|+|    +|++|+++  .+++|.+||..+.                ++++.+..+        
T Consensus       215 -~~~i-~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~----------------~~~~~i~~~g~~~~~~~  275 (543)
T 1nir_A          215 -VAEI-K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL----------------EPKQIVSTRGMTVDTQT  275 (543)
T ss_dssp             -EEEE-E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC----------------CEEEEEECCEECSSSCC
T ss_pred             -EEEE-e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc----------------ccceeecccCcccCccc
Confidence             2222 2 345678999999    99987775  3899999999877                566666542        


Q ss_pred             --cCCceeeEEEEecCCCC-EEEEeccCceEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEe-CCCcEEEcc
Q 021484          145 --RNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWA  218 (312)
Q Consensus       145 --~~~~~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd  218 (312)
                        .. ..+..+.+ ++++. ++++...++.|.+||+.+.+.+.  .+. +...+.++.|+|+++++++++ .+++|.+||
T Consensus       276 ~~~~-~~v~~i~~-s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D  352 (543)
T 1nir_A          276 YHPE-PRVAAIIA-SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVID  352 (543)
T ss_dssp             EESC-CCEEEEEE-CSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             cccC-CceEEEEE-CCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence              11 13788988 77654 56777889999999998765443  443 556678899999999866554 689999999


Q ss_pred             CCCCCCC-CCCC----ChhhhhhhhccCCC-CceeEEec-CCceEEEEEeccc-------C----------ccceeEeec
Q 021484          219 PMPTDFP-PLPD----NAEKIMKANKQGRE-DHSRITLT-PDVIMHVLRLQRR-------Q----------TLAYRERRY  274 (312)
Q Consensus       219 ~~~~~~~-~~~~----~~~~~~~~~~~~~~-~~~l~s~~-~d~~i~i~~~~~~-------~----------~~~~~~~~~  274 (312)
                      +.++++. .+..    |....  .++..++ +..+++.. .|+.|.+|++...       .          ....+...|
T Consensus       353 ~~tg~l~~~i~~g~~ph~g~g--~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p  430 (543)
T 1nir_A          353 SKDRRLSALVDVGKTPHPGRG--ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP  430 (543)
T ss_dssp             TTTTEEEEEEECSSSBCCTTC--EEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred             CCCCeEEEeeccCCCCCCCCC--cccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC
Confidence            9988642 2221    22222  1223454 56667765 6799999998761       1          112234556


Q ss_pred             CCCccCCCC----C---CCeEEEeecCCCCCC
Q 021484          275 NAADFESDE----E---EGETYLLGFSDSDAS  299 (312)
Q Consensus       275 ~~~~~~~~~----~---~~~v~~~~~~~~~~~  299 (312)
                      ++..+..+.    +   ++.|.++|..+++..
T Consensus       431 dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          431 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             TCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             CCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence            665555543    1   456888888776643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.83  E-value=2.1e-19  Score=165.21  Aligned_cols=213  Identities=12%  Similarity=0.096  Sum_probs=145.2

Q ss_pred             ccceEEEEEcCCCCcEEEEEeC-CC-----eEEEEEccCCeecCCCCCCCCc---ccccc--ccc----ccCCCccEEEE
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGS-DE-----YARVYDIRKCHWYSPISSDTPV---DTFCP--RHL----IGKNNIHITGL   94 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~-dg-----~i~iwd~~~~~~~~~~~~~~~~---~~~~~--~~~----~~~~~~~i~~~   94 (312)
                      ...+.+++|+|+| +.|++++. |+     .|++||+.+++...........   ..+..  ...    .......+..+
T Consensus        36 ~~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            4569999999999 78888887 88     9999999987632211100000   00000  000    00000337789


Q ss_pred             EEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCC--CCceEecccCCceeeEEEEecCCCCEEEEeccCceE
Q 021484           95 AYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKRE--EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL  172 (312)
Q Consensus        95 ~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v  172 (312)
                      +|+|+|++|+++.++.|++||+.++                .  ....+..+...  +..++| +|+|++|+.++ ++.|
T Consensus       115 ~~SpDg~~l~~~~~~~i~~~d~~~~----------------~~~~~~~l~~~~~~--~~~~~~-SPDG~~la~~~-~~~i  174 (741)
T 2ecf_A          115 QWSPDAQRLLFPLGGELYLYDLKQE----------------GKAAVRQLTHGEGF--ATDAKL-SPKGGFVSFIR-GRNL  174 (741)
T ss_dssp             EECTTSSEEEEEETTEEEEEESSSC----------------STTSCCBCCCSSSC--EEEEEE-CTTSSEEEEEE-TTEE
T ss_pred             EECCCCCEEEEEeCCcEEEEECCCC----------------CcceEEEcccCCcc--cccccC-CCCCCEEEEEe-CCcE
Confidence            9999999999887799999999875                2  34445555544  899999 99999999887 4699


Q ss_pred             EEEeccCCeeEEEeecCccc----------------eEEEEEcCCCCeEEEEeCCC------------------------
Q 021484          173 FIWKKKGGKLVRLMVGDRHV----------------VNQLEPHPHIPMFATCGIEK------------------------  212 (312)
Q Consensus       173 ~iwd~~~~~~~~~~~~~~~~----------------v~~~~~~p~~~~l~t~~~d~------------------------  212 (312)
                      ++||+.+++.......+...                +..++|+|+|+.|++++.|+                        
T Consensus       175 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~  254 (741)
T 2ecf_A          175 WVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP  254 (741)
T ss_dssp             EEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred             EEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence            99999988776554444332                47799999999999988765                        


Q ss_pred             ---------cEEEccCCC-CCCCCCC---CChhhhhhhhccCCCCceeEEec-----CCceEEEEEecccC
Q 021484          213 ---------TVKLWAPMP-TDFPPLP---DNAEKIMKANKQGREDHSRITLT-----PDVIMHVLRLQRRQ  265 (312)
Q Consensus       213 ---------~i~iwd~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~-----~d~~i~i~~~~~~~  265 (312)
                               .|++||+.+ ++...+.   .+...+.. ..| +++..++..+     .+..|++||+.+..
T Consensus       255 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~  323 (741)
T 2ecf_A          255 AAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLAR-VNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ  323 (741)
T ss_dssp             BTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEE-EEE-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred             CCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEE-EEe-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence                     889999988 7653322   23333433 346 8777777544     35678888876543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.83  E-value=4.7e-19  Score=147.12  Aligned_cols=221  Identities=9%  Similarity=0.013  Sum_probs=150.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCcc-ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSI-RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC   79 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~   79 (312)
                      |++||+.+.+....+...          +.. .+..++|+|++..+++++..++.|.+||+.+++.....         .
T Consensus        13 v~~~d~~~~~~~~~~~~~----------~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~---------~   73 (337)
T 1pby_B           13 LVVIDTEKMAVDKVITIA----------DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI---------D   73 (337)
T ss_dssp             EEEEETTTTEEEEEEECT----------TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE---------E
T ss_pred             EEEEECCCCcEEEEEEcC----------CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeE---------E
Confidence            578998876544433321          111 36789999998555667777899999999887632111         0


Q ss_pred             ccccccCCCccEEEEEEccCCCeEEEe-------------cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC
Q 021484           80 PRHLIGKNNIHITGLAYSNTSELLISY-------------NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN  146 (312)
Q Consensus        80 ~~~~~~~~~~~i~~~~~~~~~~~l~s~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (312)
                      ... ...|...+..++|+|+|++++++             .++.|++||+.++                +....+.. ..
T Consensus        74 ~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------------~~~~~~~~-~~  135 (337)
T 1pby_B           74 LST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL----------------SRRKAFEA-PR  135 (337)
T ss_dssp             CCB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----------------EEEEEEEC-CS
T ss_pred             cCC-cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC----------------cEEEEEeC-CC
Confidence            000 00012246688999999877665             4699999999876                45555543 22


Q ss_pred             CceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCc------------------------------------
Q 021484          147 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR------------------------------------  190 (312)
Q Consensus       147 ~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------------------------  190 (312)
                      .  +.+++| +|++++|+++  ++.|.+||+.+++.+..+..+.                                    
T Consensus       136 ~--~~~~~~-s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~  210 (337)
T 1pby_B          136 Q--ITMLAW-ARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID  210 (337)
T ss_dssp             S--CCCEEE-CTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred             C--cceeEE-CCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccc
Confidence            2  778888 9999988887  6889999998887665443221                                    


Q ss_pred             ------------------------------cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhc
Q 021484          191 ------------------------------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANK  239 (312)
Q Consensus       191 ------------------------------~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~  239 (312)
                                                    ..+..++|+|++++++++  ++.|++||+.+++. ..+. ....+ ....
T Consensus       211 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~-~~~~  286 (337)
T 1pby_B          211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSY-YSVN  286 (337)
T ss_dssp             TTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCC-CEEE
T ss_pred             cccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-CCCce-eeEE
Confidence                                          134468999999998887  69999999987753 2221 11122 2334


Q ss_pred             cCCCCceeEEecCCceEEEEEecccCcc
Q 021484          240 QGREDHSRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       240 ~~~~~~~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      +++++.++++++.++.+++|++.+....
T Consensus       287 ~s~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          287 VSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             ECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             ECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence            6778888888888999999998776443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.83  E-value=9.3e-20  Score=167.51  Aligned_cols=195  Identities=7%  Similarity=0.026  Sum_probs=143.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCC---eecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC---HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND  108 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d  108 (312)
                      .|.+++|+|++ +.|++++. +.|++||+.++   +..               . +..|...+..++|+|+|++|+.+.+
T Consensus       110 ~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~~~~~---------------~-l~~~~~~~~~~~~SPDG~~la~~~~  171 (741)
T 2ecf_A          110 GIVDYQWSPDA-QRLLFPLG-GELYLYDLKQEGKAAVR---------------Q-LTHGEGFATDAKLSPKGGFVSFIRG  171 (741)
T ss_dssp             ESCCCEECTTS-SEEEEEET-TEEEEEESSSCSTTSCC---------------B-CCCSSSCEEEEEECTTSSEEEEEET
T ss_pred             CcceeEECCCC-CEEEEEeC-CcEEEEECCCCCcceEE---------------E-cccCCcccccccCCCCCCEEEEEeC
Confidence            48899999999 78888776 99999999877   311               1 1456678999999999999999888


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC--------------ceeeEEEEecCCCCEEEEeccCc----
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--------------QTVKGVNFFGPNDEYVMSGSDCG----  170 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~v~~~s~~~~~l~~~~~dg----  170 (312)
                      +.|++||+.++                +..+....+...              ..+..++| +|+|++|++++.|+    
T Consensus       172 ~~i~~~d~~~g----------------~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~-SpDg~~l~~~~~d~~~~~  234 (741)
T 2ecf_A          172 RNLWVIDLASG----------------RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWW-APDDSAIAYARIDESPVP  234 (741)
T ss_dssp             TEEEEEETTTT----------------EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEE-CTTSSCEEEEEEECTTSC
T ss_pred             CcEEEEecCCC----------------CEEEeccCCccceeccccceeeeeccccccceEE-CCCCCEEEEEEEcCCCCc
Confidence            89999999876                222222212110              01477899 99999999987765    


Q ss_pred             -----------------------------eEEEEeccC-CeeEEEee--cCccceEEEEEcCCCCeEEEEeC-----CCc
Q 021484          171 -----------------------------HLFIWKKKG-GKLVRLMV--GDRHVVNQLEPHPHIPMFATCGI-----EKT  213 (312)
Q Consensus       171 -----------------------------~v~iwd~~~-~~~~~~~~--~~~~~v~~~~~~p~~~~l~t~~~-----d~~  213 (312)
                                                   .|++||+.+ ++......  .|...+..++| |+|+.|++++.     +..
T Consensus       235 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~  313 (741)
T 2ecf_A          235 VQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD  313 (741)
T ss_dssp             EEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE
T ss_pred             eEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE
Confidence                                         899999998 87655443  36778999999 99999887653     568


Q ss_pred             EEEccCCCCCCCCCCC-Chhh---hhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          214 VKLWAPMPTDFPPLPD-NAEK---IMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       214 i~iwd~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      |++||+.+++...+.. +...   ......++++++++++.+.++..++|.+.
T Consensus       314 i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          314 LVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             EEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence            9999998876433221 1111   12234577888888888999988888775

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.82  E-value=1.6e-19  Score=165.52  Aligned_cols=221  Identities=12%  Similarity=0.053  Sum_probs=149.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCC---------CeEEEEEccCCeecCCCCC
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD---------EYARVYDIRKCHWYSPISS   71 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~   71 (312)
                      |++||+.+.+...++.....        +...|.+++|||++ ++|++++.+         +.+++||+.+++...    
T Consensus        39 i~~~d~~~g~~~~~~~~~~~--------~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----  105 (723)
T 1xfd_A           39 VRLWNVETNTSTVLIEGKKI--------ESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS----  105 (723)
T ss_dssp             EEEBCGGGCCCEEEECTTTT--------TTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE----
T ss_pred             EEEEECCCCcEEEEeccccc--------cccccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCCCceEe----
Confidence            57899888765544432110        11248999999999 788888764         788899999876210    


Q ss_pred             CCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC----
Q 021484           72 DTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS----  147 (312)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  147 (312)
                              . .....|...+..++|+|+|+.|+.++++.|++||+.++                +..+....+...    
T Consensus       106 --------l-~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g----------------~~~~~~~~~~~~~~~~  160 (723)
T 1xfd_A          106 --------L-DPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGK----------------QAIRVVSTGKEGVIYN  160 (723)
T ss_dssp             --------C-CCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSS----------------CCEEEECCCBTTTEEE
T ss_pred             --------c-cCCccccccccccEECCCCCEEEEEECCeEEEEECCCC----------------ceEEEecCCCCCceEC
Confidence                    0 01134455578899999999999988899999999876                343333332221    


Q ss_pred             ------------ceeeEEEEecCCCCEEEEeccCc----------------------------------eEEEEeccCCe
Q 021484          148 ------------QTVKGVNFFGPNDEYVMSGSDCG----------------------------------HLFIWKKKGGK  181 (312)
Q Consensus       148 ------------~~v~~v~~~s~~~~~l~~~~~dg----------------------------------~v~iwd~~~~~  181 (312)
                                  ..+.+++| +|+|++|++++.++                                  .|++||+.+++
T Consensus       161 g~~~~v~~ee~~~~~~~~~~-SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~  239 (723)
T 1xfd_A          161 GLSDWLYEEEILKTHIAHWW-SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT  239 (723)
T ss_dssp             EECCHHHHHTTSSSSEEEEE-CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred             cccceeEEEEeccCcceEEE-CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence                        01378999 99999999887543                                  89999999888


Q ss_pred             eEEEeecC------ccceEEEEEcCCCCeEEEEeC----CCcEEEccCCCCCCCCCC-CC-hhhhh---hhhccCCCCce
Q 021484          182 LVRLMVGD------RHVVNQLEPHPHIPMFATCGI----EKTVKLWAPMPTDFPPLP-DN-AEKIM---KANKQGREDHS  246 (312)
Q Consensus       182 ~~~~~~~~------~~~v~~~~~~p~~~~l~t~~~----d~~i~iwd~~~~~~~~~~-~~-~~~~~---~~~~~~~~~~~  246 (312)
                      ....+..+      ...+..++|+|+|+++++.+.    +..|++||+.+++...+. .+ ...+.   ....+++++..
T Consensus       240 ~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~  319 (723)
T 1xfd_A          240 HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK  319 (723)
T ss_dssp             CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS
T ss_pred             eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCe
Confidence            65666654      567899999999998876653    357999999887643221 11 11111   23457888886


Q ss_pred             eEE--ecCCc------eEEEEE
Q 021484          247 RIT--LTPDV------IMHVLR  260 (312)
Q Consensus       247 l~s--~~~d~------~i~i~~  260 (312)
                      ++.  ...++      .+.+|+
T Consensus       320 l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          320 FFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             EEEEEEECCSSSSCEEEEEEEC
T ss_pred             EEEEEecccCCCcceeEEEEEe
Confidence            664  44566      455565

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=2.1e-19  Score=164.31  Aligned_cols=196  Identities=11%  Similarity=0.041  Sum_probs=141.8

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCc
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL  110 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~  110 (312)
                      ..|.+++|+|++ .++++  .++.|++||+.+++..               .+ ..+...+..++|+|+|+.|+++.++.
T Consensus        82 ~~v~~~~~spd~-~~~~~--~~~~i~~~d~~~~~~~---------------~l-~~~~~~~~~~~~SpdG~~la~~~~~~  142 (706)
T 2z3z_A           82 FPSFRTLDAGRG-LVVLF--TQGGLVGFDMLARKVT---------------YL-FDTNEETASLDFSPVGDRVAYVRNHN  142 (706)
T ss_dssp             CCCEEEEETTTT-EEEEE--ETTEEEEEETTTTEEE---------------EE-ECCTTCCTTCEECTTSSEEEEEETTE
T ss_pred             cCceeEEECCCC-eEEEE--ECCEEEEEECCCCceE---------------Ec-cCCcccccCCcCCCCCCEEEEEECCe
Confidence            469999999993 55555  3599999999887631               11 23455677889999999999888999


Q ss_pred             EEEEEcCC-----CcCCCCCcCCcccccCCCCCceEecccCC------------ceeeEEEEecCCCCEEEEec------
Q 021484          111 VYLFEKNM-----GLGPSPLSLSPEDLQKREEPQVYSGHRNS------------QTVKGVNFFGPNDEYVMSGS------  167 (312)
Q Consensus       111 i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~v~~~s~~~~~l~~~~------  167 (312)
                      |++|++.+     +                +..+....+...            ..+.+++| +|+|++|++++      
T Consensus       143 i~v~~~~~~~~~~g----------------~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~-SpDg~~la~~~~d~~~~  205 (706)
T 2z3z_A          143 LYIARGGKLGEGMS----------------RAIAVTIDGTETLVYGQAVHQREFGIEKGTFW-SPKGSCLAFYRMDQSMV  205 (706)
T ss_dssp             EEEEECBCTTSCCC----------------CCEESCSCCBTTEEESSCCGGGCTTCCCSEEE-CTTSSEEEEEEEECTTS
T ss_pred             EEEEecCcccccCC----------------CcEEeccCCCCCeEcccchhhhhcCCCceEEE-CCCCCEEEEEEECCCCC
Confidence            99999987     5                222211111110            11578999 99999999887      


Q ss_pred             ---------------------------cCceEEEEeccCCeeEEEee--cCccceEEEEEcCCCCeEEEEeCCC-----c
Q 021484          168 ---------------------------DCGHLFIWKKKGGKLVRLMV--GDRHVVNQLEPHPHIPMFATCGIEK-----T  213 (312)
Q Consensus       168 ---------------------------~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~t~~~d~-----~  213 (312)
                                                 .+..|++||+.+++......  .|...+..++|+|+|+.|++++.++     .
T Consensus       206 ~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  285 (706)
T 2z3z_A          206 KPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECK  285 (706)
T ss_dssp             CCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEE
T ss_pred             ceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeE
Confidence                                       45789999999888654442  4567799999999999998887775     8


Q ss_pred             EEEccCCCC-CCCCCCCCh-hh---hhhhhccCC--CCceeEEecCCceEEEEEec
Q 021484          214 VKLWAPMPT-DFPPLPDNA-EK---IMKANKQGR--EDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       214 i~iwd~~~~-~~~~~~~~~-~~---~~~~~~~~~--~~~~l~s~~~d~~i~i~~~~  262 (312)
                      |++||+.++ ....+.... ..   ......+++  ++.+++++..++.+++|.+.
T Consensus       286 v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          286 VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             EEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             EEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence            999999887 332221111 11   112345777  88899999999999999876

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.81  E-value=1.3e-18  Score=153.72  Aligned_cols=229  Identities=10%  Similarity=0.116  Sum_probs=160.3

Q ss_pred             CeeecccCccceeeEEecccc-cCCcCCCCcc-ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFS-ENSKQPMNSI-RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~-~~~~~~~h~~-~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   78 (312)
                      |.+||..+.+....+...... ....+  |+. .+.++.++|+++.++++...+++|.+||+.+.+..            
T Consensus       250 v~v~D~~t~~~~~~i~~~g~~~~~~~~--~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l------------  315 (543)
T 1nir_A          250 FAIMDGETLEPKQIVSTRGMTVDTQTY--HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL------------  315 (543)
T ss_dssp             EEEEETTTCCEEEEEECCEECSSSCCE--ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC------------
T ss_pred             EEEEeccccccceeecccCcccCcccc--ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc------------
Confidence            468898887766555442110 00000  233 78999999988788888899999999999876521            


Q ss_pred             cccccccCCCccEEEEEEccCCCeEEE-ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec----ccCCceeeE
Q 021484           79 CPRHLIGKNNIHITGLAYSNTSELLIS-YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG----HRNSQTVKG  152 (312)
Q Consensus        79 ~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~  152 (312)
                      ....  ..+...+..++|+|+|+++++ +. +++|.+||+.++                ++...+..    |...    .
T Consensus       316 ~~~~--i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg----------------~l~~~i~~g~~ph~g~----g  373 (543)
T 1nir_A          316 TVTS--IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR----------------RLSALVDVGKTPHPGR----G  373 (543)
T ss_dssp             EEEE--EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT----------------EEEEEEECSSSBCCTT----C
T ss_pred             eeEE--eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC----------------eEEEeeccCCCCCCCC----C
Confidence            0001  123456778999999996654 44 899999999987                66666664    3321    2


Q ss_pred             EEEecCC-CCEEEEec-cCceEEEEeccC-------CeeEEEeecCccceEEEEEcCCCCeEEEEe-------CCCcEEE
Q 021484          153 VNFFGPN-DEYVMSGS-DCGHLFIWKKKG-------GKLVRLMVGDRHVVNQLEPHPHIPMFATCG-------IEKTVKL  216 (312)
Q Consensus       153 v~~~s~~-~~~l~~~~-~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~-------~d~~i~i  216 (312)
                      +.|.+|+ +..++++. .|++|.+||+.+       .+++.++.+|...+..++++|++++|++++       .+++|.+
T Consensus       374 ~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v  453 (543)
T 1nir_A          374 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV  453 (543)
T ss_dssp             EEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred             cccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence            2333566 66667765 589999999998       899999999988888999999999999987       2779999


Q ss_pred             ccCCCCCCC-CC---------CCChhhhhhhhccCCCCceeEEe-----cCCceEEEEEecccCc
Q 021484          217 WAPMPTDFP-PL---------PDNAEKIMKANKQGREDHSRITL-----TPDVIMHVLRLQRRQT  266 (312)
Q Consensus       217 wd~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~l~s~-----~~d~~i~i~~~~~~~~  266 (312)
                      ||+.+.+.. ..         ..+...+... .+.+++..+...     +.++.|.+||.++...
T Consensus       454 ~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~  517 (543)
T 1nir_A          454 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQP-EYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL  517 (543)
T ss_dssp             EETTCTTSCCEEECHHHHHCCCSSCCEEEEE-EECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             EECCCCCCCeEEeechhhcccCCCCCceEec-cCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence            999987743 21         2333444333 366777666643     3579999999877643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.81  E-value=9e-19  Score=142.47  Aligned_cols=206  Identities=13%  Similarity=0.168  Sum_probs=139.4

Q ss_pred             CeeecccC-ccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEe--CCCeEEEEEcc--CCeecCCCCCCCCc
Q 021484            1 MWQFDLRS-DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIR--KCHWYSPISSDTPV   75 (312)
Q Consensus         1 v~~wd~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~--~~~~~~~~~~~~~~   75 (312)
                      |++||+.+ .+...+...   .       +...+.+++|+|++ +.|++++  .++..++|.+.  +++           
T Consensus        64 i~~~d~~~~~~~~~~~~~---~-------~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~-----------  121 (297)
T 2ojh_A           64 LYRLSLAGDPSPEKVDTG---F-------ATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGT-----------  121 (297)
T ss_dssp             EEEEESSSCCSCEECCCT---T-------CCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCC-----------
T ss_pred             EEEEeCCCCCCceEeccc---c-------ccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCCc-----------
Confidence            46788877 543333211   1       24678899999999 7888887  34556666554  332           


Q ss_pred             ccccccccccCCCccEEEEEEccCCCeEE-Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEE
Q 021484           76 DTFCPRHLIGKNNIHITGLAYSNTSELLI-SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV  153 (312)
Q Consensus        76 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v  153 (312)
                          ...+ .. ...+..++|+|+++.|+ ++ .++.+++|++....               .....+..+...  +.++
T Consensus       122 ----~~~~-~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~---------------~~~~~~~~~~~~--~~~~  178 (297)
T 2ojh_A          122 ----PRLM-TK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS---------------GVETRLTHGEGR--NDGP  178 (297)
T ss_dssp             ----CEEC-CS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT---------------CCEEECCCSSSC--EEEE
T ss_pred             ----eEEe-ec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCC---------------CcceEcccCCCc--cccc
Confidence                1111 22 23488899999999766 44 58989999864320               233444445544  8999


Q ss_pred             EEecCCCCEEEEec-cCceEEEEecc-CCeeEEEeecCccceEEEEEcCCCCeEEEEeCC-----------CcEEEccCC
Q 021484          154 NFFGPNDEYVMSGS-DCGHLFIWKKK-GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-----------KTVKLWAPM  220 (312)
Q Consensus       154 ~~~s~~~~~l~~~~-~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d-----------~~i~iwd~~  220 (312)
                      +| +|++++|+.++ .++.+.+|++. .+..+..+..|...+..++|+|++++|++++.+           +.|.+||+.
T Consensus       179 ~~-s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~  257 (297)
T 2ojh_A          179 DY-SPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD  257 (297)
T ss_dssp             EE-CTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred             eE-CCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence            99 99999887665 58999999886 556677787788889999999999998888765           569999998


Q ss_pred             CCCCCCCC---CChhhhhhhhccCCCCceeEEecCC
Q 021484          221 PTDFPPLP---DNAEKIMKANKQGREDHSRITLTPD  253 (312)
Q Consensus       221 ~~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~d  253 (312)
                      +++...+.   ++...+ ....+++++..+++++.+
T Consensus       258 ~~~~~~~~~~~~~~~~~-~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          258 GGNVETLFDLFGGQGTM-NSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             SCSCEEEEEEEESTTTS-CSCCBCTTSSEEEEEEEC
T ss_pred             CCCceeeeccCCCCccc-ccceECCCCCEEEEEEec
Confidence            87653322   233333 334567777777666544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.81  E-value=2.4e-18  Score=143.57  Aligned_cols=217  Identities=9%  Similarity=0.028  Sum_probs=146.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+...          ....+..++|+|++..+++++..++.|.+||+.+++....            
T Consensus        23 v~~~d~~~~~~~~~~~~~----------~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~------------   80 (349)
T 1jmx_B           23 LHVVDVASDTVYKSCVMP----------DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH------------   80 (349)
T ss_dssp             EEEEETTTTEEEEEEECS----------SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE------------
T ss_pred             EEEEECCCCcEEEEEecC----------CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE------------
Confidence            578998876644444332          1124678999999944556667789999999998873211            


Q ss_pred             cccccCC-----CccEEEEEEccCCCeEEEec-C------------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe
Q 021484           81 RHLIGKN-----NIHITGLAYSNTSELLISYN-D------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS  142 (312)
Q Consensus        81 ~~~~~~~-----~~~i~~~~~~~~~~~l~s~~-d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (312)
                        +...+     ...+..++|+|+|++|+++. +            +.|.+||+.++.             ..+....+.
T Consensus        81 --~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-------------~~~~~~~~~  145 (349)
T 1jmx_B           81 --ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-------------EAKPVRTFP  145 (349)
T ss_dssp             --EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-------------GBCCSEEEE
T ss_pred             --EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc-------------ccceeeecc
Confidence              10111     23367889999999877754 4            899999998741             002233333


Q ss_pred             cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCc--------------------------------
Q 021484          143 GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR--------------------------------  190 (312)
Q Consensus       143 ~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--------------------------------  190 (312)
                      .+.   .+.+++| +|+++ +++++.  .|++||+.+++.+..+..+.                                
T Consensus       146 ~~~---~~~~~~~-s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (349)
T 1jmx_B          146 MPR---QVYLMRA-ADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR  218 (349)
T ss_dssp             CCS---SCCCEEE-CTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred             CCC---cccceeE-CCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence            222   2788999 99999 555544  49999999888776664331                                


Q ss_pred             ------------------------------------cceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCCC-CCCCCChh
Q 021484          191 ------------------------------------HVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAE  232 (312)
Q Consensus       191 ------------------------------------~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~  232 (312)
                                                          ..+..++|+| ++++++++  ++.|.+||+.+++. ..+. ...
T Consensus       219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~  295 (349)
T 1jmx_B          219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDH  295 (349)
T ss_dssp             C-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-CSS
T ss_pred             cCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-CCC
Confidence                                                1345677889 99998887  88999999988764 2221 111


Q ss_pred             hhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          233 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       233 ~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      .+ ....+++++.++++.+.++.+++||+.+..
T Consensus       296 ~~-~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          296 TY-YCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             CC-CEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             Cc-cceEECCCCCEEEEecCCCeEEEEeccccc
Confidence            12 234567788888878888999999987654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.80  E-value=1.1e-18  Score=159.60  Aligned_cols=263  Identities=10%  Similarity=0.079  Sum_probs=160.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccC-----CeecCCCCCCCC-
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-----CHWYSPISSDTP-   74 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~-   74 (312)
                      |++||+.+.+...+..            +...+.+++|+|++ +.|+.+ .++.|++|++.+     ++.......... 
T Consensus       103 i~~~d~~~~~~~~l~~------------~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~  168 (706)
T 2z3z_A          103 LVGFDMLARKVTYLFD------------TNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET  168 (706)
T ss_dssp             EEEEETTTTEEEEEEC------------CTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT
T ss_pred             EEEEECCCCceEEccC------------CcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC
Confidence            4788887765333221            34567889999999 677774 689999999988     653221110000 


Q ss_pred             cccccccccccCCCccEEEEEEccCCCeEEEec----------------------------------CCcEEEEEcCCCc
Q 021484           75 VDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----------------------------------DELVYLFEKNMGL  120 (312)
Q Consensus        75 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----------------------------------d~~i~iwd~~~~~  120 (312)
                      +..-..  ....+...+.+++|+|+|++|++++                                  +..|++||+.++ 
T Consensus       169 ~~~g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~-  245 (706)
T 2z3z_A          169 LVYGQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG-  245 (706)
T ss_dssp             EEESSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT-
T ss_pred             eEcccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC-
Confidence            000000  0011123357899999999888753                                  356899999876 


Q ss_pred             CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc-----eEEEEeccCCeeEEEee--cCcc--
Q 021484          121 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-----HLFIWKKKGGKLVRLMV--GDRH--  191 (312)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~--~~~~--  191 (312)
                                     +.............+.+++| +|++++|++++.++     .|++||+.+++....+.  .+..  
T Consensus       246 ---------------~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~  309 (706)
T 2z3z_A          246 ---------------KTVYLQTGEPKEKFLTNLSW-SPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV  309 (706)
T ss_dssp             ---------------EEEECCCCSCTTCEEEEEEE-CTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred             ---------------ceEeeccCCCCceeEeeEEE-ECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence                           32222221111234899999 99999999887765     99999999984333332  2222  


Q ss_pred             -ceEEEEEcC--CCCeEEEEeCCCcEEEccCC--CCCCCCCCCChhhhhhhhccCCCCceeE-EecCCc----eEEEEEe
Q 021484          192 -VVNQLEPHP--HIPMFATCGIEKTVKLWAPM--PTDFPPLPDNAEKIMKANKQGREDHSRI-TLTPDV----IMHVLRL  261 (312)
Q Consensus       192 -~v~~~~~~p--~~~~l~t~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~----~i~i~~~  261 (312)
                       .+..++|+|  +|+++++++.|+.++||.+.  ++.+..+..+...+.....+++++..++ ++..++    .+..|++
T Consensus       310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  389 (706)
T 2z3z_A          310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI  389 (706)
T ss_dssp             CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred             CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence             246789999  99999999999999999865  3334445444444433345778776665 444444    4555554


Q ss_pred             cccCcc-------c-eeEeecCCCccCCC----CCCCeEEEeecCCC
Q 021484          262 QRRQTL-------A-YRERRYNAADFESD----EEEGETYLLGFSDS  296 (312)
Q Consensus       262 ~~~~~~-------~-~~~~~~~~~~~~~~----~~~~~v~~~~~~~~  296 (312)
                      ......       . ...++|++..+...    .....+++++...+
T Consensus       390 ~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          390 KGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             TCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             CCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence            433211       1 12566666655432    22356888887654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.79  E-value=1e-18  Score=160.14  Aligned_cols=195  Identities=11%  Similarity=0.068  Sum_probs=140.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCc---cEEEEEEccCCCeEEEec-
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI---HITGLAYSNTSELLISYN-  107 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~s~~-  107 (312)
                      .+.+++|+|++ +++++ +.||+|++||+.+++..               .++..|..   .+.+++|+|+|++|+++. 
T Consensus        18 ~~~~~~~spdg-~~~~~-~~dg~i~~~d~~~g~~~---------------~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~   80 (723)
T 1xfd_A           18 HDPEAKWISDT-EFIYR-EQKGTVRLWNVETNTST---------------VLIEGKKIESLRAIRYEISPDREYALFSYN   80 (723)
T ss_dssp             CCCCCCBSSSS-CBCCC-CSSSCEEEBCGGGCCCE---------------EEECTTTTTTTTCSEEEECTTSSEEEEEES
T ss_pred             cccccEEcCCC-cEEEE-eCCCCEEEEECCCCcEE---------------EEeccccccccccceEEECCCCCEEEEEec
Confidence            46789999999 56665 78999999999988621               11133333   488999999999888863 


Q ss_pred             C---------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe---cccCCceeeEEEEecCCCCEEEEeccCceEEEE
Q 021484          108 D---------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW  175 (312)
Q Consensus       108 d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iw  175 (312)
                      +         +.+++||+.++                +. +.+.   ++...  +..++| +|+|++|+.++. +.|++|
T Consensus        81 ~~~~~~~~~~~~i~~~d~~~~----------------~~-~~l~~~~~~~~~--~~~~~~-SPdG~~la~~~~-~~i~~~  139 (723)
T 1xfd_A           81 VEPIYQHSYTGYYVLSKIPHG----------------DP-QSLDPPEVSNAK--LQYAGW-GPKGQQLIFIFE-NNIYYC  139 (723)
T ss_dssp             CCCCSSSCCCSEEEEEESSSC----------------CC-EECCCTTCCSCC--CSBCCB-CSSTTCEEEEET-TEEEEE
T ss_pred             CccceeecceeeEEEEECCCC----------------ce-EeccCCcccccc--ccccEE-CCCCCEEEEEEC-CeEEEE
Confidence            3         78899999886                33 2232   22222  788999 999999998876 799999


Q ss_pred             eccCCeeEEEeecCccce------------------EEEEEcCCCCeEEEEeCCC-------------------------
Q 021484          176 KKKGGKLVRLMVGDRHVV------------------NQLEPHPHIPMFATCGIEK-------------------------  212 (312)
Q Consensus       176 d~~~~~~~~~~~~~~~~v------------------~~~~~~p~~~~l~t~~~d~-------------------------  212 (312)
                      |+.+++.......+...+                  ..++|+|+|+.|++++.|+                         
T Consensus       140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (723)
T 1xfd_A          140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (723)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence            999888766655444333                  7899999999999887543                         


Q ss_pred             ---------cEEEccCCCCCC-CCCCCCh-----hhhhhhhccCCCCceeEEec----CCceEEEEEeccc
Q 021484          213 ---------TVKLWAPMPTDF-PPLPDNA-----EKIMKANKQGREDHSRITLT----PDVIMHVLRLQRR  264 (312)
Q Consensus       213 ---------~i~iwd~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~l~s~~----~d~~i~i~~~~~~  264 (312)
                               .|++||+.+++. ..+..+.     ...+....+++++.++++..    .+..+++||+.+.
T Consensus       220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g  290 (723)
T 1xfd_A          220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG  290 (723)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred             CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC
Confidence                     799999988763 4443321     22234456888888886654    2367899997654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.79  E-value=9.3e-18  Score=140.32  Aligned_cols=233  Identities=9%  Similarity=0.016  Sum_probs=157.7

Q ss_pred             ccceEEEEEcCCCCcEEEEEeC-------CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGS-------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  102 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  102 (312)
                      ...+..++|+|++ +.+++++.       ++.|.+||..+++....              + . ....+..++|+|+|+.
T Consensus        40 ~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--------------~-~-~~~~~~~~~~s~dg~~  102 (353)
T 3vgz_A           40 GKGAYEMAYSQQE-NALWLATSQSRKLDKGGVVYRLDPVTLEVTQA--------------I-H-NDLKPFGATINNTTQT  102 (353)
T ss_dssp             ESSEEEEEEETTT-TEEEEEECCCTTTEESEEEEEECTTTCCEEEE--------------E-E-ESSCCCSEEEETTTTE
T ss_pred             ccCccceEECCCC-CEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE--------------E-e-cCCCcceEEECCCCCE
Confidence            4468899999998 55665553       67899999998863211              1 1 1234668899999985


Q ss_pred             E-EEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC-------ceeeEEEEecCCCCEEEEec--cCce
Q 021484          103 L-ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-------QTVKGVNFFGPNDEYVMSGS--DCGH  171 (312)
Q Consensus       103 l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~v~~~s~~~~~l~~~~--~dg~  171 (312)
                      + ++. .++.|.+||..++                +....+..+...       ..+.+++| +|+++++++++  .++.
T Consensus       103 l~v~~~~~~~v~~~d~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~  165 (353)
T 3vgz_A          103 LWFGNTVNSAVTAIDAKTG----------------EVKGRLVLDDRKRTEEVRPLQPRELVA-DDATNTVYISGIGKESV  165 (353)
T ss_dssp             EEEEETTTTEEEEEETTTC----------------CEEEEEESCCCCCCSSCCCCEEEEEEE-ETTTTEEEEEEESSSCE
T ss_pred             EEEEecCCCEEEEEeCCCC----------------eeEEEEecCCCccccccCCCCCceEEE-CCCCCEEEEEecCCCce
Confidence            4 444 4899999999887                555555543211       12678998 89999877765  4889


Q ss_pred             EEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC-CCCC--C-hhhhhhhhccCCCCcee
Q 021484          172 LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLPD--N-AEKIMKANKQGREDHSR  247 (312)
Q Consensus       172 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~--~-~~~~~~~~~~~~~~~~l  247 (312)
                      |.+||..+++.+..+..+...+..++|+|+++.+++++.++.|.+||+.+++.. .+..  . .........+++++..+
T Consensus       166 i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  245 (353)
T 3vgz_A          166 IWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA  245 (353)
T ss_dssp             EEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE
T ss_pred             EEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE
Confidence            999999999998888756666889999999999999999999999999887632 1111  0 11112223466776655


Q ss_pred             E-EecCCceEEEEEecccCcccee--------EeecCCCcc-CCCCCCCeEEEeecCCC
Q 021484          248 I-TLTPDVIMHVLRLQRRQTLAYR--------ERRYNAADF-ESDEEEGETYLLGFSDS  296 (312)
Q Consensus       248 ~-s~~~d~~i~i~~~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~v~~~~~~~~  296 (312)
                      + +...++.+.+||+.........        .+.+++..+ .+...++.+.++|...+
T Consensus       246 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          246 FITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             EEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            4 4455699999998665432221        334444422 22334566777776554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.78  E-value=4.2e-17  Score=135.28  Aligned_cols=225  Identities=6%  Similarity=0.013  Sum_probs=148.9

Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec-CCcEEE
Q 021484           36 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-DELVYL  113 (312)
Q Consensus        36 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d~~i~i  113 (312)
                      ..|.++...++++.+.++.|++||+.++++.              ..+ ..+...+ .++|+|+|+++++ +. ++.|++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~--------------~~~-~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~   66 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL--------------NQI-TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQ   66 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEE--------------EEE-ECCCCEE-EEEECSSSCEEEEEESTTCEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCccccee--------------eeE-EccCCcc-eEEEcCCCCEEEEEeCCCCeEEE
Confidence            3456666577888899999999999988732              111 2234455 9999999985554 44 889999


Q ss_pred             EEcCCCcCCCCCcCCcccccCCCC-CceEecccCCceeeEEEEecCCCCEEEEeccCc---eEEEEeccCCeeEEEeecC
Q 021484          114 FEKNMGLGPSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKLVRLMVGD  189 (312)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~  189 (312)
                      ||+.++                +. ...+..+...  ..+++| +|++++|+++..++   .|.+||+.+++.+..+..+
T Consensus        67 ~d~~~~----------------~~~~~~~~~~~~~--~~~~~~-s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  127 (331)
T 3u4y_A           67 IETQLE----------------PPKVVAIQEGQSS--MADVDI-TPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP  127 (331)
T ss_dssp             EECSSS----------------SCEEEEEEECSSC--CCCEEE-CTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC
T ss_pred             EECCCC----------------ceeEEecccCCCC--ccceEE-CCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC
Confidence            999887                45 5555555433  444898 99999999666553   8999999999988887654


Q ss_pred             ccceEEEEEcCCCCeEEEE-eCCCc-EEEccCCCCCCC-----CCCCChhhhhhhhccCCCCc-eeEEecCCceEEEEEe
Q 021484          190 RHVVNQLEPHPHIPMFATC-GIEKT-VKLWAPMPTDFP-----PLPDNAEKIMKANKQGREDH-SRITLTPDVIMHVLRL  261 (312)
Q Consensus       190 ~~~v~~~~~~p~~~~l~t~-~~d~~-i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~i~~~  261 (312)
                       ..+..++|+|+|++++++ ..++. |.+|++......     ........ .....++++++ ++++...++.+++|++
T Consensus       128 -~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~spdg~~l~v~~~~~~~v~v~d~  205 (331)
T 3u4y_A          128 -YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTR-PFNITFTPDGNFAFVANLIGNSIGILET  205 (331)
T ss_dssp             -TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSS-EEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             -CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCC-ccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence             456899999999865544 56688 999998753211     00011111 23344677777 4566667899999998


Q ss_pred             cccCc---cce---------eEeecCCCccC-CCCCCCeEEEeecCCCC
Q 021484          262 QRRQT---LAY---------RERRYNAADFE-SDEEEGETYLLGFSDSD  297 (312)
Q Consensus       262 ~~~~~---~~~---------~~~~~~~~~~~-~~~~~~~v~~~~~~~~~  297 (312)
                      .....   ...         ..+.|++..+. ....++.++++|...+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~  254 (331)
T 3u4y_A          206 QNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGT  254 (331)
T ss_dssp             SSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred             CCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence            76544   211         13445555332 23345557777766554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.77  E-value=5e-17  Score=135.86  Aligned_cols=206  Identities=7%  Similarity=0.053  Sum_probs=131.8

Q ss_pred             ccceEEEEEcCCCCcEEEEEeC--CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGS--DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      ...+..++|+|++ ++++++..  ++.|++|++.+++..             .......+...+..++|+|+|++|+++ 
T Consensus        39 ~~~p~~~a~spdg-~l~~~~~~~~~~~v~~~~~~~g~~~-------------~~~~~~~~~~~p~~~a~spdg~~l~~~~  104 (347)
T 3hfq_A           39 TQNPTYLALSAKD-CLYSVDKEDDEGGIAAWQIDGQTAH-------------KLNTVVAPGTPPAYVAVDEARQLVYSAN  104 (347)
T ss_dssp             CSCCCCEEECTTC-EEEEEEEETTEEEEEEEEEETTEEE-------------EEEEEEEESCCCSEEEEETTTTEEEEEE
T ss_pred             cCCcceEEEccCC-eEEEEEecCCCceEEEEEecCCcEE-------------EeeeeecCCCCCEEEEECCCCCEEEEEe
Confidence            3456789999998 64444432  689999999776521             111112345667889999999976664 


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc-------CCceeeEEEEecCCCCEEEEeccCceEEEEecc
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-------NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK  178 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~  178 (312)
                       .++.|.+|++.....             ...+..+....       ....+.+++| +|+++++++...++.|.+|++.
T Consensus       105 ~~~~~v~v~~~~~~g~-------------~~~~~~~~~~~~~p~~~~~~~~~~~~~~-spdg~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A          105 YHKGTAEVMKIAADGA-------------LTLTDTVQHSGHGPRPEQDGSHIHYTDL-TPDNRLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             TTTTEEEEEEECTTSC-------------EEEEEEEECCCCCSSTTCSSCCEEEEEE-CTTSCEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEEEeCCCCC-------------eeecceeecCCCCCCccccCCCceEEEE-CCCCcEEEEeCCCCEEEEEEEC
Confidence             488999999963200             01111121110       0123778999 9999977777778999999998


Q ss_pred             -CCeeE--EEeecC-ccceEEEEEcCCCCeEEE-EeCCCcEEEccCCC--CCCC---CCCCChh-----hhhhhhccCCC
Q 021484          179 -GGKLV--RLMVGD-RHVVNQLEPHPHIPMFAT-CGIEKTVKLWAPMP--TDFP---PLPDNAE-----KIMKANKQGRE  243 (312)
Q Consensus       179 -~~~~~--~~~~~~-~~~v~~~~~~p~~~~l~t-~~~d~~i~iwd~~~--~~~~---~~~~~~~-----~~~~~~~~~~~  243 (312)
                       +++..  ..+..+ ...+..++|+|+|+++++ ...++.|++|++..  +++.   .+.....     .......++++
T Consensus       171 ~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd  250 (347)
T 3hfq_A          171 DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD  250 (347)
T ss_dssp             TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT
T ss_pred             CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC
Confidence             55433  222222 236788999999997555 55788999999874  3211   1110110     11223457788


Q ss_pred             Ccee-EEecCCceEEEEEecc
Q 021484          244 DHSR-ITLTPDVIMHVLRLQR  263 (312)
Q Consensus       244 ~~~l-~s~~~d~~i~i~~~~~  263 (312)
                      ++++ ++...++.+.+|++..
T Consensus       251 G~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          251 GHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             SCEEEEEEETTTEEEEEEECG
T ss_pred             CCEEEEEeCCCCEEEEEEECC
Confidence            8866 6667789999999863

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=159.39  Aligned_cols=230  Identities=11%  Similarity=0.105  Sum_probs=144.4

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeC---------CCeEEEEEccCCeecCCCCC
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS---------DEYARVYDIRKCHWYSPISS   71 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~   71 (312)
                      |++||+.+.+...++......        ...+.+++|||+| +.|+.++.         ++.|++||+.+++....   
T Consensus        38 i~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~---  105 (719)
T 1z68_A           38 IVLYNIETGQSYTILSNRTMK--------SVNASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG---  105 (719)
T ss_dssp             EEEEESSSCCEEEEECHHHHH--------TTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS---
T ss_pred             EEEEEcCCCcEEEEEcccccc--------ccceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCCCccccc---
Confidence            578998887755544322110        0138899999999 78887765         78999999998874110   


Q ss_pred             CCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC----
Q 021484           72 DTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS----  147 (312)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  147 (312)
                               ..+    ...+..++|+|+|+.|+.+.++.|++|++.++...   .+.    ........+.++...    
T Consensus       106 ---------~~l----~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~---~l~----~~~~~~~v~~g~~~~v~~e  165 (719)
T 1z68_A          106 ---------NEL----PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF---QIT----FNGRENKIFNGIPDWVYEE  165 (719)
T ss_dssp             ---------SCC----CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCE---ECC----CCCBTTTEEESSCCHHHHH
T ss_pred             ---------eec----CcccccceECCCCCEEEEEECCeEEEEeCCCCCcE---EEe----cCCCcCCeEcccccceeee
Confidence                     111    23577899999999999988999999999876100   000    000011112222111    


Q ss_pred             ---ceeeEEEEecCCCCEEEEeccCc----------------------------------eEEEEeccCCeeE--EE---
Q 021484          148 ---QTVKGVNFFGPNDEYVMSGSDCG----------------------------------HLFIWKKKGGKLV--RL---  185 (312)
Q Consensus       148 ---~~v~~v~~~s~~~~~l~~~~~dg----------------------------------~v~iwd~~~~~~~--~~---  185 (312)
                         ....+++| +|+|++|++++.|.                                  .|++||+.+++..  ..   
T Consensus       166 e~~~~~~~~~w-SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~  244 (719)
T 1z68_A          166 EMLATKYALWW-SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPV  244 (719)
T ss_dssp             HTTCSSCCEEE-CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCC
T ss_pred             ecccCcccEEE-CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccC
Confidence               00258999 99999999887652                                  7889999887642  12   


Q ss_pred             ---eecCccceEEEEEcCCCCeEEEEeCC----CcEEEcc----CCCCCCCCCC-----CChhhhh----hhhccCCCCc
Q 021484          186 ---MVGDRHVVNQLEPHPHIPMFATCGIE----KTVKLWA----PMPTDFPPLP-----DNAEKIM----KANKQGREDH  245 (312)
Q Consensus       186 ---~~~~~~~v~~~~~~p~~~~l~t~~~d----~~i~iwd----~~~~~~~~~~-----~~~~~~~----~~~~~~~~~~  245 (312)
                         +.+|...+..++|+|+++++++....    ..|.+||    +.+++...+.     .+...+.    ....+++++.
T Consensus       245 ~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  324 (719)
T 1z68_A          245 PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI  324 (719)
T ss_dssp             CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred             CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCC
Confidence               23577789999999998777664422    2488899    7776654333     2333232    1345777777


Q ss_pred             eeE--EecCCce--EEEEEecc
Q 021484          246 SRI--TLTPDVI--MHVLRLQR  263 (312)
Q Consensus       246 ~l~--s~~~d~~--i~i~~~~~  263 (312)
                      .++  +...++.  |.+|++..
T Consensus       325 ~l~~~~~~~~g~~~l~~~~~~~  346 (719)
T 1z68_A          325 SYYKIFSDKDGYKHIHYIKDTV  346 (719)
T ss_dssp             CEEEEEECTTSCEEEEEESSCS
T ss_pred             eEEEEEEccCCceEEEEEECCC
Confidence            544  3445554  44555443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.77  E-value=2.6e-17  Score=136.95  Aligned_cols=198  Identities=11%  Similarity=0.095  Sum_probs=129.1

Q ss_pred             ceEEEEEcCCCCcEEE-EEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e-cC
Q 021484           32 RLNAIVIDPRNPNYFA-VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-ND  108 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d  108 (312)
                      .+..++|+|++ +.++ ++..++.|.+||+..+...            ....... ....+.+++|+|+++++++ + .+
T Consensus        85 ~~~~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~------------~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~  150 (343)
T 1ri6_A           85 SLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPV------------GVVDVVE-GLDGCHSANISPDNRTLWVPALKQ  150 (343)
T ss_dssp             CCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEE------------EEEEEEC-CCTTBCCCEECTTSSEEEEEEGGG
T ss_pred             CCcEEEEcCCC-CEEEEEecCCCeEEEEECCCCccc------------ccccccc-CCCCceEEEECCCCCEEEEecCCC
Confidence            67899999999 5554 4456899999999532210            0111112 2335788999999986655 4 59


Q ss_pred             CcEEEEEcCC-CcCCCCCcCCcccccCCCCCc----eEecccCCceeeEEEEecCCCCEEEE-eccCceEEEEeccC--C
Q 021484          109 ELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQ----VYSGHRNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKG--G  180 (312)
Q Consensus       109 ~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~v~~~s~~~~~l~~-~~~dg~v~iwd~~~--~  180 (312)
                      +.|++||+.+ +                +...    .+..+.. ..+..++| +|+++++++ +..++.|.+|++..  +
T Consensus       151 ~~v~~~d~~~~~----------------~~~~~~~~~~~~~~~-~~~~~~~~-~pdg~~l~~~~~~~~~i~~~~~~~~~g  212 (343)
T 1ri6_A          151 DRICLFTVSDDG----------------HLVAQDPAEVTTVEG-AGPRHMVF-HPNEQYAYCVNELNSSVDVWELKDPHG  212 (343)
T ss_dssp             TEEEEEEECTTS----------------CEEEEEEEEEECSTT-CCEEEEEE-CTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred             CEEEEEEecCCC----------------ceeeecccccccCCC-CCcceEEE-CCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence            9999999976 3                2221    2222222 23788999 999997754 45899999999953  4


Q ss_pred             ee--EEEee---cC---ccceEEEEEcCCCCeEE-EEeCCCcEEEccCC--CCCC---CCCCCChhhhhhhhccCCCCce
Q 021484          181 KL--VRLMV---GD---RHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPM--PTDF---PPLPDNAEKIMKANKQGREDHS  246 (312)
Q Consensus       181 ~~--~~~~~---~~---~~~v~~~~~~p~~~~l~-t~~~d~~i~iwd~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~  246 (312)
                      +.  ...+.   ..   ...+..++|+|++++|+ ++..++.|++|++.  ++..   ..+..+..  .....+++++.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~s~dg~~  290 (343)
T 1ri6_A          213 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ--PRGFNVDHSGKY  290 (343)
T ss_dssp             CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS--CCCEEECTTSSE
T ss_pred             cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc--cceEEECCCCCE
Confidence            32  22222   11   23567899999999876 44579999999998  3322   11211222  334457778887


Q ss_pred             eEEec-CCceEEEEEecc
Q 021484          247 RITLT-PDVIMHVLRLQR  263 (312)
Q Consensus       247 l~s~~-~d~~i~i~~~~~  263 (312)
                      ++.++ .++.+.+|++..
T Consensus       291 l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          291 LIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             EEEECTTTCEEEEEEEET
T ss_pred             EEEecCCCCeEEEEEEcC
Confidence            77666 689999997764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.76  E-value=4.6e-18  Score=161.72  Aligned_cols=193  Identities=8%  Similarity=-0.000  Sum_probs=150.5

Q ss_pred             CccceEEEEEc-CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCc-cEEEEEEccCCCeEEEe
Q 021484           29 NSIRLNAIVID-PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI-HITGLAYSNTSELLISY  106 (312)
Q Consensus        29 h~~~v~~~~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~  106 (312)
                      |...+.+++|+ |++ +.|++++ ++.|.+|++.+++..               .+ ..|.. .+..++|+ +|+.|+.+
T Consensus       294 ~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~~---------------~~-~~~~~~~~~~~~~s-dg~~l~~~  354 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVL---------------KV-PEPLRIRYVRRGGD-TKVAFIHG  354 (1045)
T ss_dssp             ECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEE---------------EC-SCCSCEEEEEECSS-SEEEEEEE
T ss_pred             cccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCceE---------------Ec-cCCCcceEEeeeEc-CCCeEEEE
Confidence            44578999999 999 7777776 789999999876521               11 44555 78999999 99877775


Q ss_pred             -cCCcEE-EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          107 -NDELVY-LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       107 -~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                       .+..+. +|++.++                + ...+.++...  +..++| +|+|++|++++.++.|++||+.+++...
T Consensus       355 s~~~~l~~~~d~~~~----------------~-~~~l~~~~~~--~~~~~~-SpDG~~la~~~~~~~v~~~d~~tg~~~~  414 (1045)
T 1k32_A          355 TREGDFLGIYDYRTG----------------K-AEKFEENLGN--VFAMGV-DRNGKFAVVANDRFEIMTVDLETGKPTV  414 (1045)
T ss_dssp             ETTEEEEEEEETTTC----------------C-EEECCCCCCS--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ECCCceEEEEECCCC----------------C-ceEecCCccc--eeeeEE-CCCCCEEEEECCCCeEEEEECCCCceEE
Confidence             467788 8898765                2 2334455544  899999 9999999999999999999999999887


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCC----------cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCc
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATCGIEK----------TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDV  254 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  254 (312)
                      .+..|...+..++|+|+|++|++++.++          .|++||+.+++...+..+...... ..+++++..++..+.++
T Consensus       415 ~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~-~~~spdG~~l~~~s~~~  493 (1045)
T 1k32_A          415 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYA-PAFDADSKNLYYLSYRS  493 (1045)
T ss_dssp             EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEE-EEECTTSCEEEEEESCC
T ss_pred             eccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCC-ceEcCCCCEEEEEeccc
Confidence            7778988999999999999998887644          899999998776555555444433 34788888888888777


Q ss_pred             eEEEEEe
Q 021484          255 IMHVLRL  261 (312)
Q Consensus       255 ~i~i~~~  261 (312)
                      ..++|+.
T Consensus       494 ~~~~~~~  500 (1045)
T 1k32_A          494 LDPSPDR  500 (1045)
T ss_dssp             CCCEECS
T ss_pred             CCcCcch
Confidence            6666653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.76  E-value=3.5e-17  Score=146.38  Aligned_cols=189  Identities=10%  Similarity=0.006  Sum_probs=137.1

Q ss_pred             cceEEEEEcCCCCcEEEEEeC---CCeEEEEEccC--CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eE
Q 021484           31 IRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LL  103 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l  103 (312)
                      ..+..++|+|+  +++++++.   +...++|.+..  ..              ....+ .. ...+...+|+|+|+  .+
T Consensus        65 ~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g--------------~~~~l-~~-~~~~~~~~~s~dg~~~~~  126 (582)
T 3o4h_A           65 NSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPG--------------EEQRL-EA-VKPMRILSGVDTGEAVVF  126 (582)
T ss_dssp             SEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTT--------------CCEEC-TT-SCSBEEEEEEECSSCEEE
T ss_pred             cccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCC--------------ccccc-cC-CCCceeeeeCCCCCeEEE
Confidence            57899999997  57777664   55667766654  21              00111 11 12234668888886  44


Q ss_pred             EEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC----ceEEEEeccC
Q 021484          104 ISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC----GHLFIWKKKG  179 (312)
Q Consensus       104 ~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d----g~v~iwd~~~  179 (312)
                      +++.++.+.+||+.++                +.. .+..+.    ..+++| +|+|++|++++.+    +.|++||+.+
T Consensus       127 ~s~~~~~~~l~d~~~g----------------~~~-~l~~~~----~~~~~~-spDG~~la~~~~~~~~~~~i~~~d~~~  184 (582)
T 3o4h_A          127 TGATEDRVALYALDGG----------------GLR-ELARLP----GFGFVS-DIRGDLIAGLGFFGGGRVSLFTSNLSS  184 (582)
T ss_dssp             EEECSSCEEEEEEETT----------------EEE-EEEEES----SCEEEE-EEETTEEEEEEEEETTEEEEEEEETTT
T ss_pred             EecCCCCceEEEccCC----------------cEE-EeecCC----CceEEE-CCCCCEEEEEEEcCCCCeEEEEEcCCC
Confidence            5556666779999876                333 333332    167888 9999999988877    7899999998


Q ss_pred             CeeEEEeecCccceEEEEEcCCCCeEEEEeCCC--cEEEccCCCCCCCCCCCChhhhhhhhc--------cCCCCceeEE
Q 021484          180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK--TVKLWAPMPTDFPPLPDNAEKIMKANK--------QGREDHSRIT  249 (312)
Q Consensus       180 ~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~s  249 (312)
                      ++.. .+..|...+..++|+|+|+.|+++..++  .|++||+.+++...+..+...+. ...        +++++.++++
T Consensus       185 g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~~~~  262 (582)
T 3o4h_A          185 GGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFS-SYRPTAITWLGYLPDGRLAVV  262 (582)
T ss_dssp             CCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHH-HHCCSEEEEEEECTTSCEEEE
T ss_pred             CCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChh-hhhhccccceeEcCCCcEEEE
Confidence            8764 6677888899999999999999888888  89999999887654444444443 334        7888888899


Q ss_pred             ecCCceEEEEEe
Q 021484          250 LTPDVIMHVLRL  261 (312)
Q Consensus       250 ~~~d~~i~i~~~  261 (312)
                      .+.++.+++|++
T Consensus       263 ~~~~g~~~l~~~  274 (582)
T 3o4h_A          263 ARREGRSAVFID  274 (582)
T ss_dssp             EEETTEEEEEET
T ss_pred             EEcCCcEEEEEE
Confidence            999999999998

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.74  E-value=3.8e-16  Score=130.48  Aligned_cols=227  Identities=10%  Similarity=0.100  Sum_probs=139.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEe-CCCeEEEEEccC-CeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-SDEYARVYDIRK-CHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~   78 (312)
                      |++||+.+.....+....         .|...+..++|+|++ ++|++++ .++.|.+|++.. +...       .+..+
T Consensus        65 v~~~~~~~g~~~~~~~~~---------~~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~-------~~~~~  127 (347)
T 3hfq_A           65 IAAWQIDGQTAHKLNTVV---------APGTPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALT-------LTDTV  127 (347)
T ss_dssp             EEEEEEETTEEEEEEEEE---------EESCCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEE-------EEEEE
T ss_pred             EEEEEecCCcEEEeeeee---------cCCCCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCee-------eccee
Confidence            467887554432222211         134567899999999 6666665 789999999963 2211       00000


Q ss_pred             cccc---cccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcC-CCcCCCCCcCCcccccCCCCC--ceEecccCCceee
Q 021484           79 CPRH---LIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKN-MGLGPSPLSLSPEDLQKREEP--QVYSGHRNSQTVK  151 (312)
Q Consensus        79 ~~~~---~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~  151 (312)
                      ....   ....+...+.+++|+|+|+++++. .++.|++|++. ++                +..  ..+..... ..+.
T Consensus       128 ~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g----------------~~~~~~~~~~~~g-~~p~  190 (347)
T 3hfq_A          128 QHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG----------------QLSEQSVLTMEAG-FGPR  190 (347)
T ss_dssp             ECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS----------------CEEEEEEEECCTT-CCEE
T ss_pred             ecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC----------------cEEEeeeEEcCCC-CCCc
Confidence            0000   001123458899999999966665 48899999997 33                221  11222222 2367


Q ss_pred             EEEEecCCCCEEEE-eccCceEEEEeccC--Cee--EEEeecCc------cceEEEEEcCCCCeE-EEEeCCCcEEEccC
Q 021484          152 GVNFFGPNDEYVMS-GSDCGHLFIWKKKG--GKL--VRLMVGDR------HVVNQLEPHPHIPMF-ATCGIEKTVKLWAP  219 (312)
Q Consensus       152 ~v~~~s~~~~~l~~-~~~dg~v~iwd~~~--~~~--~~~~~~~~------~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~  219 (312)
                      .++| +|+|++|++ +..++.|.+|++..  ++.  +..+....      ..+..++|+|+|++| ++...++.|.+|++
T Consensus       191 ~~~~-spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          191 HLVF-SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             EEEE-CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred             eEEE-CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence            8999 999996655 56789999999874  543  22333222      348889999999986 55667899999998


Q ss_pred             CCC-CC---CCCCCChhhhhhhhccCCCCceeEEec-CCceEEEEEecc
Q 021484          220 MPT-DF---PPLPDNAEKIMKANKQGREDHSRITLT-PDVIMHVLRLQR  263 (312)
Q Consensus       220 ~~~-~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~i~~~~~  263 (312)
                      ... ..   ..+..+...+ ....+++++++++.+. .++.+.+|++..
T Consensus       270 ~~~g~~~~~~~~~~~~~~~-~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          270 TADGHLTLIQQISTEGDFP-RDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             CGGGCEEEEEEEECSSSCC-CEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CCCCcEEEeEEEecCCCCc-CeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            632 21   1122212222 3344778888776655 458999997753

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.74  E-value=2.1e-16  Score=150.36  Aligned_cols=154  Identities=8%  Similarity=0.046  Sum_probs=125.6

Q ss_pred             Ccc-ceEEEEEcCCCCcEEEEEeCCCeEE-EEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           29 NSI-RLNAIVIDPRNPNYFAVGGSDEYAR-VYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        29 h~~-~v~~~~~~p~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      |.. .+..++|+ ++ +.|+.++.++.+. +|++.+++.               ..+ ..|...+..++|+|+|++|+++
T Consensus       335 ~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~---------------~~l-~~~~~~~~~~~~SpDG~~la~~  396 (1045)
T 1k32_A          335 PLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKA---------------EKF-EENLGNVFAMGVDRNGKFAVVA  396 (1045)
T ss_dssp             CSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCE---------------EEC-CCCCCSEEEEEECTTSSEEEEE
T ss_pred             CCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCc---------------eEe-cCCccceeeeEECCCCCEEEEE
Confidence            455 79999999 88 7888888888888 889886642               222 3567789999999999988886


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc----------eEEEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG----------HLFIW  175 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg----------~v~iw  175 (312)
                       .++.|++||+.++                +....+.+|...  +.+++| +|+|++|++++.++          .|++|
T Consensus       397 ~~~~~v~~~d~~tg----------------~~~~~~~~~~~~--v~~~~~-SpDG~~la~~~~~~~~~~~~~~~~~i~l~  457 (1045)
T 1k32_A          397 NDRFEIMTVDLETG----------------KPTVIERSREAM--ITDFTI-SDNSRFIAYGFPLKHGETDGYVMQAIHVY  457 (1045)
T ss_dssp             ETTSEEEEEETTTC----------------CEEEEEECSSSC--CCCEEE-CTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             CCCCeEEEEECCCC----------------ceEEeccCCCCC--ccceEE-CCCCCeEEEEecCccccccCCCCCeEEEE
Confidence             5899999999887                555556577655  899999 99999998887654          89999


Q ss_pred             eccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484          176 KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  220 (312)
Q Consensus       176 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  220 (312)
                      |+.+++ +..+..|...+..++|+|+|+.|++++.++..++|+..
T Consensus       458 d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          458 DMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             ETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             ECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence            999887 66777788888999999999999999988777777643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.74  E-value=7.9e-17  Score=134.37  Aligned_cols=153  Identities=9%  Similarity=0.059  Sum_probs=109.5

Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE-EEe-cCCcEE
Q 021484           35 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-ISY-NDELVY  112 (312)
Q Consensus        35 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~-~d~~i~  112 (312)
                      .+++++++ .++++++.++.|++||+.+++...              .+.......+..++|+|+++.+ ++. .++.|+
T Consensus         4 g~~~~~~~-~~~v~~~~~~~v~~~d~~~~~~~~--------------~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~   68 (349)
T 1jmx_B            4 GPALKAGH-EYMIVTNYPNNLHVVDVASDTVYK--------------SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY   68 (349)
T ss_dssp             CCCCCTTC-EEEEEEETTTEEEEEETTTTEEEE--------------EEECSSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred             cccccCCC-EEEEEeCCCCeEEEEECCCCcEEE--------------EEecCCCCCCceeEECCCCCEEEEEeCCCCcEE
Confidence            45677777 899999999999999999887321              1111111246789999999855 444 489999


Q ss_pred             EEEcCCCcCCCCCcCCcccccCCCCCceEecccC----CceeeEEEEecCCCCEEEEeccC------------ceEEEEe
Q 021484          113 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN----SQTVKGVNFFGPNDEYVMSGSDC------------GHLFIWK  176 (312)
Q Consensus       113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~v~~~s~~~~~l~~~~~d------------g~v~iwd  176 (312)
                      +||+.++                +....+.....    ...+..++| +|++++|++++.+            +.|.+||
T Consensus        69 ~~d~~t~----------------~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d  131 (349)
T 1jmx_B           69 GIDLDTC----------------KNTFHANLSSVPGEVGRSMYSFAI-SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFS  131 (349)
T ss_dssp             EEETTTT----------------EEEEEEESCCSTTEEEECSSCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred             EEeCCCC----------------cEEEEEEcccccccccccccceEE-CCCCCEEEEEcccccccccccccCCCeEEEEE
Confidence            9999876                44444442211    122678998 9999999998866            8999999


Q ss_pred             ccCCee---EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          177 KKGGKL---VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       177 ~~~~~~---~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      +.+++.   +..+. +...+.+++|+|+++ +++++  +.|.+||+.+++
T Consensus       132 ~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~  177 (349)
T 1jmx_B          132 TADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGK  177 (349)
T ss_dssp             GGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCC
T ss_pred             CCCccccceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCc
Confidence            987443   33444 334688899999999 55554  449999998765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=2.1e-16  Score=145.11  Aligned_cols=233  Identities=9%  Similarity=0.077  Sum_probs=145.5

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCC---------CeEEEEEccCCeecCCCCC
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD---------EYARVYDIRKCHWYSPISS   71 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~   71 (312)
                      |++||+.++++..++.......      +......++|||++ +.|+.++.+         +.+.+||+.++++..    
T Consensus        38 i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----  106 (740)
T 4a5s_A           38 ILVFNAEYGNSSVFLENSTFDE------FGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----  106 (740)
T ss_dssp             EEEEETTTCCEEEEECTTTTTT------CCSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEECC----
T ss_pred             EEEEECCCCceEEEEechhhhh------hcccccceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCCcEEE----
Confidence            5789999887665554433220      22234568999999 788887765         567799999987321    


Q ss_pred             CCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC----
Q 021484           72 DTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS----  147 (312)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  147 (312)
                                  +..|...+...+|||+|+.||...++.|++|++.++..   .++..    .......+.++...    
T Consensus       107 ------------l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~---~~lt~----~g~~~~~~~g~~~~v~~e  167 (740)
T 4a5s_A          107 ------------EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPS---YRITW----TGKEDIIYNGITDWVYEE  167 (740)
T ss_dssp             ------------SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCC---EECCS----CCBTTTEEESBCCHHHHH
T ss_pred             ------------cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCce---EEEcC----CCCccceecCcccccccc
Confidence                        14456789999999999999998899999999987610   00000    00111122222110    


Q ss_pred             ---ceeeEEEEecCCCCEEEEeccC------------------------------------ceEEEEeccC---Ce--eE
Q 021484          148 ---QTVKGVNFFGPNDEYVMSGSDC------------------------------------GHLFIWKKKG---GK--LV  183 (312)
Q Consensus       148 ---~~v~~v~~~s~~~~~l~~~~~d------------------------------------g~v~iwd~~~---~~--~~  183 (312)
                         .....+.| +|+|++|+.++.|                                    ..|++||+.+   ++  ..
T Consensus       168 e~~~~~~~~~w-SpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~  246 (740)
T 4a5s_A          168 EVFSAYSALWW-SPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS  246 (740)
T ss_dssp             HTSSSSBCEEE-CTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred             hhcCCCcceEE-CCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence               01235888 9999999887432                                    1588899988   73  22


Q ss_pred             EEee------cCccceEEEEEcCCCCeEEEEe----CCCcEEEccCCCCC-------CCCC--CCChhhhh----hhhcc
Q 021484          184 RLMV------GDRHVVNQLEPHPHIPMFATCG----IEKTVKLWAPMPTD-------FPPL--PDNAEKIM----KANKQ  240 (312)
Q Consensus       184 ~~~~------~~~~~v~~~~~~p~~~~l~t~~----~d~~i~iwd~~~~~-------~~~~--~~~~~~~~----~~~~~  240 (312)
                      ..+.      +|...+..++|+|+|+.++...    .+..|++||+.+++       ...+  ..+...+-    ....+
T Consensus       247 ~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f  326 (740)
T 4a5s_A          247 IQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF  326 (740)
T ss_dssp             EEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred             EEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceE
Confidence            3343      2777899999999999765543    23479999998876       2222  12222221    12346


Q ss_pred             CCCCceeE-Eec-CC--ceEEEEEeccc
Q 021484          241 GREDHSRI-TLT-PD--VIMHVLRLQRR  264 (312)
Q Consensus       241 ~~~~~~l~-s~~-~d--~~i~i~~~~~~  264 (312)
                      ++++..++ ..+ .+  ..|++|++...
T Consensus       327 spDG~~l~~~~s~~~G~~~l~~~~~~~~  354 (740)
T 4a5s_A          327 TLDGNSFYKIISNEEGYRHICYFQIDKK  354 (740)
T ss_dssp             CTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred             cCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence            78887665 444 34  45666665543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.73  E-value=4e-16  Score=129.36  Aligned_cols=146  Identities=8%  Similarity=0.016  Sum_probs=109.3

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCc-cEEEEEEccCCCeE-EEe-cCCcEEEEEcCCCc
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI-HITGLAYSNTSELL-ISY-NDELVYLFEKNMGL  120 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~  120 (312)
                      .++++++.++.|++||+.+++..              ..+...+.. .+..++|+|+++.+ +++ .++.|.+||+.++ 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~--------------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-   66 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVD--------------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-   66 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE--------------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-
T ss_pred             cEEEEcCCCCeEEEEECCCCcEE--------------EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC-
Confidence            57899999999999999988732              111112211 36789999999755 445 4889999999876 


Q ss_pred             CCCCCcCCcccccCCCCCceEeccc-C--CceeeEEEEecCCCCEEEEec------------cCceEEEEeccCCeeEEE
Q 021484          121 GPSPLSLSPEDLQKREEPQVYSGHR-N--SQTVKGVNFFGPNDEYVMSGS------------DCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~v~~v~~~s~~~~~l~~~~------------~dg~v~iwd~~~~~~~~~  185 (312)
                                     +....+.... .  ...+..++| +|++++|+++.            .++.|.+||+.+++.+..
T Consensus        67 ---------------~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~  130 (337)
T 1pby_B           67 ---------------ETLGRIDLSTPEERVKSLFGAAL-SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA  130 (337)
T ss_dssp             ---------------CEEEEEECCBTTEEEECTTCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE
T ss_pred             ---------------CeEeeEEcCCcccccccccceEE-CCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEE
Confidence                           4554444221 0  012678999 99999998886            579999999999988877


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      +.. ...+..++|+|++++++++  ++.|++||+.+++
T Consensus       131 ~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~  165 (337)
T 1pby_B          131 FEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT  165 (337)
T ss_dssp             EEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE
T ss_pred             EeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc
Confidence            764 3467889999999988877  6899999988664

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.71  E-value=1.4e-16  Score=142.53  Aligned_cols=194  Identities=10%  Similarity=0.016  Sum_probs=134.3

Q ss_pred             ccceEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-  107 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-  107 (312)
                      ..+|++++|+|+| +.||.++. ||+++||++.+++.               ..+...+...+..++|+|+ ++++++. 
T Consensus        21 ~~~~~~~~~~~DG-~~la~~s~~~g~~~lw~~~~g~~---------------~~lt~~~~~~~~~~~~spd-~~l~~~~~   83 (582)
T 3o4h_A           21 AVEKYSLQGVVDG-DKLLVVGFSEGSVNAYLYDGGET---------------VKLNREPINSVLDPHYGVG-RVILVRDV   83 (582)
T ss_dssp             HSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTEE---------------EECCSSCCSEECEECTTCS-EEEEEEEC
T ss_pred             ccchheeecCCCC-CeEEEEEccCCceeEEEEcCCCc---------------EeeecccccccccccCCCC-eEEEEecc
Confidence            4579999999999 78887766 99999999876652               2221333357899999999 7666543 


Q ss_pred             ---CCcEEEEEcCC--CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCC--EEEEeccCceEEEEeccCC
Q 021484          108 ---DELVYLFEKNM--GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE--YVMSGSDCGHLFIWKKKGG  180 (312)
Q Consensus       108 ---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~--~l~~~~~dg~v~iwd~~~~  180 (312)
                         +....+|.+..  ..               .. ..+.... .  +...+| +|+++  .++++..+ .+.+||+.++
T Consensus        84 ~~g~~~~~l~~~~~~~~g---------------~~-~~l~~~~-~--~~~~~~-s~dg~~~~~~s~~~~-~~~l~d~~~g  142 (582)
T 3o4h_A           84 SKGAEQHALFKVNTSRPG---------------EE-QRLEAVK-P--MRILSG-VDTGEAVVFTGATED-RVALYALDGG  142 (582)
T ss_dssp             STTSCCEEEEEEETTSTT---------------CC-EECTTSC-S--BEEEEE-EECSSCEEEEEECSS-CEEEEEEETT
T ss_pred             CCCCcceEEEEEeccCCC---------------cc-ccccCCC-C--ceeeee-CCCCCeEEEEecCCC-CceEEEccCC
Confidence               35556665543  20               11 1222222 1  334566 66665  34444444 4559999998


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeEEEEeCC----CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCc--
Q 021484          181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE----KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDV--  254 (312)
Q Consensus       181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--  254 (312)
                      +.......+.   .+++|+|+|+.+++++.+    +.|++||+.+++...+..+...+ ....++++++.+++...++  
T Consensus       143 ~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~-~~~~~SpDG~~l~~~~~~~~~  218 (582)
T 3o4h_A          143 GLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSF-SSASISPGMKVTAGLETAREA  218 (582)
T ss_dssp             EEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEE-EEEEECTTSCEEEEEECSSCE
T ss_pred             cEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCcc-ccceECCCCCEEEEccCCCee
Confidence            8765554333   789999999999988877    78999999998877666665544 4455889999999877888  


Q ss_pred             eEEEEEecccC
Q 021484          255 IMHVLRLQRRQ  265 (312)
Q Consensus       255 ~i~i~~~~~~~  265 (312)
                      .|++||+....
T Consensus       219 ~i~~~d~~~~~  229 (582)
T 3o4h_A          219 RLVTVDPRDGS  229 (582)
T ss_dssp             EEEEECTTTCC
T ss_pred             EEEEEcCCCCc
Confidence            88999876653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.69  E-value=3.5e-14  Score=119.18  Aligned_cols=201  Identities=6%  Similarity=-0.011  Sum_probs=126.9

Q ss_pred             cceEEEEEcCCCCcEEEEEeCC----CeEEEEEccC--CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSD----EYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  104 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~d----g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  104 (312)
                      ..+..++|+|++ ++|++++.+    +.|.+|++..  +++.             .......+......+++  ++++|+
T Consensus        50 ~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~~~-------------~~~~~~~~~~~p~~~~~--dg~~l~  113 (361)
T 3scy_A           50 ANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGTLH-------------LLNTQKTMGADPCYLTT--NGKNIV  113 (361)
T ss_dssp             SCCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTEEE-------------EEEEEECSSSCEEEEEE--CSSEEE
T ss_pred             CCCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCcEE-------------EeeEeccCCCCcEEEEE--CCCEEE
Confidence            356779999999 777777765    8999999875  3321             11111223456677777  777665


Q ss_pred             Ee--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC---------CceeeEEEEecCCCCEEEEe-ccCceE
Q 021484          105 SY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---------SQTVKGVNFFGPNDEYVMSG-SDCGHL  172 (312)
Q Consensus       105 s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~v~~~s~~~~~l~~~-~~dg~v  172 (312)
                      ++  .++.|.+|++......             ........+..         ...+.+++| +|++++|+++ ..++.|
T Consensus       114 ~~~~~~~~v~~~~~~~~g~~-------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~v  179 (361)
T 3scy_A          114 TANYSGGSITVFPIGQDGAL-------------LPASDVIEFKGSGPDKERQTMPHLHCVRI-TPDGKYLLADDLGTDQI  179 (361)
T ss_dssp             EEETTTTEEEEEEBCTTSCB-------------CSCSEEEECCCCCSCTTTCSSCCEEEEEE-CTTSSEEEEEETTTTEE
T ss_pred             EEECCCCEEEEEEeCCCCcC-------------cccceeEEccCCCCCccccCCCcceEEEE-CCCCCEEEEEeCCCCEE
Confidence            54  4899999999753100             00111111100         112578999 9999976554 458899


Q ss_pred             EEEeccCCe-------eE-----EEe-ecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCCCC------CCCCChh
Q 021484          173 FIWKKKGGK-------LV-----RLM-VGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFP------PLPDNAE  232 (312)
Q Consensus       173 ~iwd~~~~~-------~~-----~~~-~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~------~~~~~~~  232 (312)
                      .+|++....       ..     ... ..+...+..++|+|+++++++++ .++.|.+|++.++.+.      ....+..
T Consensus       180 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~  259 (361)
T 3scy_A          180 HKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQ  259 (361)
T ss_dssp             EEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCC
T ss_pred             EEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCC
Confidence            999877533       11     111 22345678999999999877776 6899999998865421      1111111


Q ss_pred             hhhhhhccCCCCceeEEec-C-CceEEEEEec
Q 021484          233 KIMKANKQGREDHSRITLT-P-DVIMHVLRLQ  262 (312)
Q Consensus       233 ~~~~~~~~~~~~~~l~s~~-~-d~~i~i~~~~  262 (312)
                      .. ....+++++++++... . ++.+.+|++.
T Consensus       260 ~~-~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          260 GS-GDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             CE-EEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             Cc-ccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            11 2445788888775544 4 5899999986

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.69  E-value=6.9e-15  Score=123.53  Aligned_cols=214  Identities=9%  Similarity=0.067  Sum_probs=128.6

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc--cccccCCCccEEEEEEccCCCeEEE-e
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP--RHLIGKNNIHITGLAYSNTSELLIS-Y  106 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s-~  106 (312)
                      ......+++  ++..++++...++.|.+|++...........   ......  ......+...+.+++|+|+|++++. .
T Consensus        99 ~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~  173 (361)
T 3scy_A           99 GADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD---VIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD  173 (361)
T ss_dssp             SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE---EEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce---eEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence            345667777  5633444445789999999975432211000   000000  0000122345788999999995554 4


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCC-C------ceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEEec
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREE-P------QVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKK  177 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~  177 (312)
                       .++.|++|++........           .. +      ........ ..+.+++| +|+++++++++ .++.|.+|++
T Consensus       174 ~~~~~v~v~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~~~-~~~~~~~~-spdg~~l~v~~~~~~~v~v~~~  240 (361)
T 3scy_A          174 LGTDQIHKFNINPNANADN-----------KEKFLTKGTPEAFKVAPG-SGPRHLIF-NSDGKFAYLINEIGGTVIAFRY  240 (361)
T ss_dssp             TTTTEEEEEEECTTCCTTT-----------CCCCEEEEEEEEEECCTT-CCEEEEEE-CTTSSEEEEEETTTCEEEEEEE
T ss_pred             CCCCEEEEEEEcCCCCccc-----------ccceeecccccceecCCC-CCCeEEEE-cCCCCEEEEEcCCCCeEEEEEe
Confidence             388999999876410000           00 1      11111111 23788999 99999887766 6899999999


Q ss_pred             cCCee--EEEee---cCccceEEEEEcCCCCeEEEEeC--CCcEEEccCC--CCCCC---CCCCChhhhhhhhccCCCCc
Q 021484          178 KGGKL--VRLMV---GDRHVVNQLEPHPHIPMFATCGI--EKTVKLWAPM--PTDFP---PLPDNAEKIMKANKQGREDH  245 (312)
Q Consensus       178 ~~~~~--~~~~~---~~~~~v~~~~~~p~~~~l~t~~~--d~~i~iwd~~--~~~~~---~~~~~~~~~~~~~~~~~~~~  245 (312)
                      .+++.  +..+.   .+...+..++|+|+|++|++++.  ++.|.+|++.  ++.+.   .+..  ........++++++
T Consensus       241 ~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~  318 (361)
T 3scy_A          241 ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGK  318 (361)
T ss_dssp             ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSC
T ss_pred             cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCC
Confidence            87754  23332   23345689999999999866665  4899999986  33321   1111  11223345778888


Q ss_pred             eeEEec-CCceEEEEEecc
Q 021484          246 SRITLT-PDVIMHVLRLQR  263 (312)
Q Consensus       246 ~l~s~~-~d~~i~i~~~~~  263 (312)
                      +++.+. .++.+.+|++..
T Consensus       319 ~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          319 YLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             EEEEEETTTTEEEEEEECT
T ss_pred             EEEEEECCCCCEEEEEEEC
Confidence            776665 678999987753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.69  E-value=2.2e-15  Score=126.86  Aligned_cols=202  Identities=11%  Similarity=0.066  Sum_probs=128.6

Q ss_pred             eEEEEEcCCCCc--EEEEEe-------------CCCeEEEEEccC-CeecCCCCCCCCcccccccccccCCCccEEEEEE
Q 021484           33 LNAIVIDPRNPN--YFAVGG-------------SDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY   96 (312)
Q Consensus        33 v~~~~~~p~~~~--~l~~~~-------------~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   96 (312)
                      +.+++|+|++ +  +++++.             .++.+.+|++.. +++...           .......+...+.+++|
T Consensus        85 ~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~-----------~~~~~~~~~~~~~~~~~  152 (365)
T 1jof_A           85 PRANDADTNT-RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKN-----------VQNYEYQENTGIHGMVF  152 (365)
T ss_dssp             GGGGCTTSCC-EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEE-----------EEEEECCTTCCEEEEEE
T ss_pred             CccEEECCCC-CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcce-----------EeeEEeCCCCcceEEEE
Confidence            4458999999 5  344553             689999999973 432100           00000124567899999


Q ss_pred             ccCCCeEEEe--cCCcEEEEEcC-CCcCCCCCcCCcccccCCCCC--ceEecccCCceeeEEEEecCCCCEEEEecc-Cc
Q 021484           97 SNTSELLISY--NDELVYLFEKN-MGLGPSPLSLSPEDLQKREEP--QVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG  170 (312)
Q Consensus        97 ~~~~~~l~s~--~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg  170 (312)
                      +|+|++|+++  .++.|++|++. ++                +..  ..+........+..++| +|+|++|++++. ++
T Consensus       153 spdG~~l~~~~~~~~~v~~~~~~~~g----------------~~~~~~~~~~~~~g~~p~~~~~-spdg~~l~v~~~~~~  215 (365)
T 1jof_A          153 DPTETYLYSADLTANKLWTHRKLASG----------------EVELVGSVDAPDPGDHPRWVAM-HPTGNYLYALMEAGN  215 (365)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTS----------------CEEEEEEEECSSTTCCEEEEEE-CTTSSEEEEEETTTT
T ss_pred             CCCCCEEEEEcCCCCEEEEEEECCCC----------------CEEEeeeEecCCCCCCCCEeEE-CCCCCEEEEEECCCC
Confidence            9999977665  37899999997 54                221  22221110123889999 999999887764 78


Q ss_pred             eEEEEecc--CCeeE---EEeec-------Ccc------ceEEEE-EcCCCCeEEEEeCC-C-----cEEEccCC-CCCC
Q 021484          171 HLFIWKKK--GGKLV---RLMVG-------DRH------VVNQLE-PHPHIPMFATCGIE-K-----TVKLWAPM-PTDF  224 (312)
Q Consensus       171 ~v~iwd~~--~~~~~---~~~~~-------~~~------~v~~~~-~~p~~~~l~t~~~d-~-----~i~iwd~~-~~~~  224 (312)
                      .|.+|++.  +++..   ..+..       |..      .+..++ |+|+|++|++++.+ .     +|++|++. ++++
T Consensus       216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~  295 (365)
T 1jof_A          216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI  295 (365)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE
T ss_pred             eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE
Confidence            99999765  56542   12221       121      478999 99999987766533 2     89999986 4443


Q ss_pred             CC----CCCChhhhhhhhccCC---CCceeEEecC-CceEEEEEeccc
Q 021484          225 PP----LPDNAEKIMKANKQGR---EDHSRITLTP-DVIMHVLRLQRR  264 (312)
Q Consensus       225 ~~----~~~~~~~~~~~~~~~~---~~~~l~s~~~-d~~i~i~~~~~~  264 (312)
                      ..    ...+.... ....+++   ++.+++.+.. ++.+++|++...
T Consensus       296 ~~~~~~~~~~~~~~-~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          296 EKQLFLSPTPTSGG-HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEEECSSCCT-TCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEeeeeeecCCCCc-ccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            21    11111112 2233456   6788887776 489999998755

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.68  E-value=1.7e-15  Score=139.20  Aligned_cols=194  Identities=8%  Similarity=0.064  Sum_probs=131.3

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCC-----ccEEEEEEccCCCeEEEe
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN-----IHITGLAYSNTSELLISY  106 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~s~  106 (312)
                      ...+++|+|++ .+++++  |+.|++||+.+++...               ++..|.     .....++|||||++|+.+
T Consensus        18 ~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~Spdg~~l~~~   79 (740)
T 4a5s_A           18 KLYSLRWISDH-EYLYKQ--ENNILVFNAEYGNSSV---------------FLENSTFDEFGHSINDYSISPDGQFILLE   79 (740)
T ss_dssp             CCCCEEECSSS-EEEEEE--TTEEEEEETTTCCEEE---------------EECTTTTTTCCSCCCEEEECTTSSEEEEE
T ss_pred             cccccEECCCC-cEEEEc--CCcEEEEECCCCceEE---------------EEechhhhhhcccccceEECCCCCEEEEE
Confidence            46689999999 788886  9999999999887321               112222     223458999999988876


Q ss_pred             c-C---------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEe
Q 021484          107 N-D---------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK  176 (312)
Q Consensus       107 ~-d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd  176 (312)
                      . +         +.+++||+.++                +. ..+..+...  +..++| +|+|+.|+.+ .++.|++|+
T Consensus        80 ~~~~~~~r~~~~~~~~~~d~~~~----------------~~-~~l~~~~~~--~~~~~~-SPdG~~la~~-~~~~i~~~~  138 (740)
T 4a5s_A           80 YNYVKQWRHSYTASYDIYDLNKR----------------QL-ITEERIPNN--TQWVTW-SPVGHKLAYV-WNNDIYVKI  138 (740)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTT----------------EE-CCSSCCCTT--EEEEEE-CSSTTCEEEE-ETTEEEEES
T ss_pred             ECCeeeEEEccceEEEEEECCCC----------------cE-EEcccCCCc--ceeeEE-CCCCCEEEEE-ECCeEEEEE
Confidence            4 3         66789999887                33 334455544  899999 9999999888 578999999


Q ss_pred             ccCCeeEEEe-ecCccce-----------------EEEEEcCCCCeEEEEeCCC--------------------------
Q 021484          177 KKGGKLVRLM-VGDRHVV-----------------NQLEPHPHIPMFATCGIEK--------------------------  212 (312)
Q Consensus       177 ~~~~~~~~~~-~~~~~~v-----------------~~~~~~p~~~~l~t~~~d~--------------------------  212 (312)
                      +.+++..+.- .++...+                 ..+.|||+|+.||.++.|.                          
T Consensus       139 ~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~y  218 (740)
T 4a5s_A          139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPY  218 (740)
T ss_dssp             STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEEC
T ss_pred             CCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecC
Confidence            9887754321 2222222                 3488999999988876332                          


Q ss_pred             ----------cEEEccCCC---C---CCCCCCC------ChhhhhhhhccCCCCceeEEec----CCceEEEEEecccC
Q 021484          213 ----------TVKLWAPMP---T---DFPPLPD------NAEKIMKANKQGREDHSRITLT----PDVIMHVLRLQRRQ  265 (312)
Q Consensus       213 ----------~i~iwd~~~---~---~~~~~~~------~~~~~~~~~~~~~~~~~l~s~~----~d~~i~i~~~~~~~  265 (312)
                                +|++||+.+   +   ....+..      +... +....|++++..++...    .+..|++||+.++.
T Consensus       219 p~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          219 PKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHY-LCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             CBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEE-EEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             CCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeE-EEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence                      478888887   5   3222221      2222 23445778887655543    23578999987654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.67  E-value=9.7e-15  Score=123.70  Aligned_cols=227  Identities=12%  Similarity=0.073  Sum_probs=146.9

Q ss_pred             EEEcCCCCcEEEEEeC-CC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcE
Q 021484           36 IVIDPRNPNYFAVGGS-DE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV  111 (312)
Q Consensus        36 ~~~~p~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i  111 (312)
                      .+|+|++ +.|+.++. ++  .|.+||+.+++..               .+...+...+..++|+|+|+.|+.. .++.|
T Consensus        41 ~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~g~~~---------------~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l  104 (388)
T 3pe7_A           41 KCFTRDG-SKLLFGGAFDGPWNYYLLDLNTQVAT---------------QLTEGRGDNTFGGFLSPDDDALFYVKDGRNL  104 (388)
T ss_dssp             CCBCTTS-CEEEEEECTTSSCEEEEEETTTCEEE---------------ECCCSSCBCSSSCEECTTSSEEEEEETTTEE
T ss_pred             ccCCCCC-CEEEEEEcCCCCceEEEEeCCCCceE---------------EeeeCCCCCccceEEcCCCCEEEEEeCCCeE
Confidence            7899999 66666665 67  4888898887632               1223444444467899999988886 58899


Q ss_pred             EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE-ecCCCCEEEEe----------------------cc
Q 021484          112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSG----------------------SD  168 (312)
Q Consensus       112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-~s~~~~~l~~~----------------------~~  168 (312)
                      ++||+.++                +....+..+...  +....| .++++.+++..                      ..
T Consensus       105 ~~~d~~~g----------------~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (388)
T 3pe7_A          105 MRVDLATL----------------EENVVYQVPAEW--VGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP  166 (388)
T ss_dssp             EEEETTTC----------------CEEEEEECCTTE--EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred             EEEECCCC----------------cceeeeechhhc--ccccceeECCCCCeeccccccCcccccccccchhhhhhccCC
Confidence            99999887                444444444432  333322 27899888742                      34


Q ss_pred             CceEEEEeccCCeeEEEeecCccceEEEEEcC-CCCeEEEEeCC------CcEEEccCCCCCCCCCCCChh-hhhhhhcc
Q 021484          169 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP-HIPMFATCGIE------KTVKLWAPMPTDFPPLPDNAE-KIMKANKQ  240 (312)
Q Consensus       169 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~  240 (312)
                      +..|++||+.+++.. .+..+...+..++|+| +++.|+.+..+      ..|.++++.+.....+..+.. ..+....+
T Consensus       167 ~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~  245 (388)
T 3pe7_A          167 CCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFW  245 (388)
T ss_dssp             CEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEE
T ss_pred             cceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceE
Confidence            578999999988754 4444666789999999 99988877753      378888888776655544332 12233457


Q ss_pred             CCCCceeEEecC--C---ceEEEEEecccCcccee---------------EeecCCCccCCC---------CCCCeEEEe
Q 021484          241 GREDHSRITLTP--D---VIMHVLRLQRRQTLAYR---------------ERRYNAADFESD---------EEEGETYLL  291 (312)
Q Consensus       241 ~~~~~~l~s~~~--d---~~i~i~~~~~~~~~~~~---------------~~~~~~~~~~~~---------~~~~~v~~~  291 (312)
                      ++++..++..+.  +   ..+++|++.........               .++|++..+...         .....+|++
T Consensus       246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~  325 (388)
T 3pe7_A          246 VPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF  325 (388)
T ss_dssp             CTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred             CCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence            888886654332  2   24899988765422111               245566555532         345578999


Q ss_pred             ecCCCC
Q 021484          292 GFSDSD  297 (312)
Q Consensus       292 ~~~~~~  297 (312)
                      +...+.
T Consensus       326 d~~~~~  331 (388)
T 3pe7_A          326 NMKNGT  331 (388)
T ss_dssp             ETTTTE
T ss_pred             eccCCc
Confidence            886653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.67  E-value=2.4e-16  Score=144.42  Aligned_cols=203  Identities=4%  Similarity=-0.050  Sum_probs=127.8

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCcc---------EEEEEEccCCCe
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH---------ITGLAYSNTSEL  102 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------i~~~~~~~~~~~  102 (312)
                      .+..++|||+| +.|+.+. ++.|++|++.+++..........      ..+..++...         ..+++|+|||+.
T Consensus       111 ~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~------~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~  182 (719)
T 1z68_A          111 PIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITFNGRE------NKIFNGIPDWVYEEEMLATKYALWWSPNGKF  182 (719)
T ss_dssp             SBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCCCCBT------TTEEESSCCHHHHHHTTCSSCCEEECTTSSE
T ss_pred             ccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEecCCCc------CCeEcccccceeeeecccCcccEEECCCCCE
Confidence            57889999999 6777775 78999999988763221110000      0011222222         248999999998


Q ss_pred             EEEec-C-C---------------------------------cEEEEEcCCCcCCCCCcCCcccccCCCCC--------c
Q 021484          103 LISYN-D-E---------------------------------LVYLFEKNMGLGPSPLSLSPEDLQKREEP--------Q  139 (312)
Q Consensus       103 l~s~~-d-~---------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--------~  139 (312)
                      |++++ | +                                 .|++||+.++                +..        .
T Consensus       183 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~----------------~~~~~~~~~~~~  246 (719)
T 1z68_A          183 LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP----------------AYVGPQEVPVPA  246 (719)
T ss_dssp             EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH----------------HHHCCEECCCCH
T ss_pred             EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC----------------CccceeEccCCc
Confidence            88753 3 2                                 6778888765                221        1


Q ss_pred             eEecccCCceeeEEEEecCCCCEEEEeccC----ceEEEEe----ccCCeeEEEe----ecCccceE-----EEEEcCCC
Q 021484          140 VYSGHRNSQTVKGVNFFGPNDEYVMSGSDC----GHLFIWK----KKGGKLVRLM----VGDRHVVN-----QLEPHPHI  202 (312)
Q Consensus       140 ~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d----g~v~iwd----~~~~~~~~~~----~~~~~~v~-----~~~~~p~~  202 (312)
                      .+.++.  ..+..++| +|+++++++....    ..|++||    ..++++...+    ..|...+.     .+.|+|+|
T Consensus       247 ~~~~~~--~~~~~~~~-SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          247 MIASSD--YYFSWLTW-VTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             HHHTSC--EEEEEEEE-SSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             cCCCCc--ceEEEeEE-eCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence            123344  34899999 9998877774432    3588999    8777765544    35666666     78999999


Q ss_pred             CeEEE--EeCCC--cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeE-EecC----CceEEEEEecc
Q 021484          203 PMFAT--CGIEK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRI-TLTP----DVIMHVLRLQR  263 (312)
Q Consensus       203 ~~l~t--~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~----d~~i~i~~~~~  263 (312)
                      +.++.  ...++  .|.+|++.++....+..+...+.....+  ++..++ +...    ++..++|.+..
T Consensus       324 ~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~--d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          324 ISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV--TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             SCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE--CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             CeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE--eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            96544  44555  5777888777655554433333333334  444444 4444    47788888754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.66  E-value=3.3e-14  Score=115.36  Aligned_cols=199  Identities=10%  Similarity=0.145  Sum_probs=135.8

Q ss_pred             CccceEEEEEc-CCCCcEEEEEeC-CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           29 NSIRLNAIVID-PRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        29 h~~~v~~~~~~-p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      |...+.+++++ +++ +++++... ++.|++||. +++..              ..+...+...+..++++|+|+++++.
T Consensus        75 ~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d~-~g~~~--------------~~~~~~~~~~~~~i~~~~~g~l~v~~  138 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYNQ-YGQFV--------------RKFGATILQHPRGVTVDNKGRIIVVE  138 (286)
T ss_dssp             CBSSEEEEEEETTTT-EEEEEECGGGCEEEEECT-TSCEE--------------EEECTTTCSCEEEEEECTTSCEEEEE
T ss_pred             cccCceEEEEEcCCC-eEEEEcCCCCCEEEEECC-CCcEE--------------EEecCccCCCceEEEEeCCCCEEEEE
Confidence            45678899994 666 66666643 899999994 44421              11112234568899999999988776


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                       .++.|++|+...                 +....+........+..+++ +++++++++...++.|++||.. ++.+..
T Consensus       139 ~~~~~i~~~~~~g-----------------~~~~~~~~~~~~~~p~~i~~-~~~g~l~v~~~~~~~i~~~~~~-g~~~~~  199 (286)
T 1q7f_A          139 CKVMRVIIFDQNG-----------------NVLHKFGCSKHLEFPNGVVV-NDKQEIFISDNRAHCVKVFNYE-GQYLRQ  199 (286)
T ss_dssp             TTTTEEEEECTTS-----------------CEEEEEECTTTCSSEEEEEE-CSSSEEEEEEGGGTEEEEEETT-CCEEEE
T ss_pred             CCCCEEEEEcCCC-----------------CEEEEeCCCCccCCcEEEEE-CCCCCEEEEECCCCEEEEEcCC-CCEEEE
Confidence             588999999653                 34444432111123789999 8999988888889999999974 566666


Q ss_pred             eecC--ccceEEEEEcCCCCeEEEEeCCC-cEEEccCCCCCCCCCCCChhh-hhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          186 MVGD--RHVVNQLEPHPHIPMFATCGIEK-TVKLWAPMPTDFPPLPDNAEK-IMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       186 ~~~~--~~~v~~~~~~p~~~~l~t~~~d~-~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      +..+  ...+..++++|+|+++++...++ .|++|+.....+..+..+... ......+.+++.++++ +.++.|++|++
T Consensus       200 ~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          200 IGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             ESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred             EccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence            6433  35788999999999888888776 999999765443333221111 1122335567777777 56899999986


Q ss_pred             cc
Q 021484          262 QR  263 (312)
Q Consensus       262 ~~  263 (312)
                      ..
T Consensus       279 ~~  280 (286)
T 1q7f_A          279 VQ  280 (286)
T ss_dssp             SC
T ss_pred             cc
Confidence            54

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.65  E-value=3.2e-15  Score=126.63  Aligned_cols=199  Identities=9%  Similarity=0.015  Sum_probs=127.5

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEE--EEccCCCeEEEe
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGL--AYSNTSELLISY  106 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~s~  106 (312)
                      |...+..++|+|++ +.|+.++.++.|++||+.+++..               .+...+...+...  .++|++++++..
T Consensus        79 ~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g~~~---------------~~~~~~~~~~~~~~~~~~~dg~~l~~~  142 (388)
T 3pe7_A           79 RGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLATLEEN---------------VVYQVPAEWVGYGTWVANSDCTKLVGI  142 (388)
T ss_dssp             SCBCSSSCEECTTS-SEEEEEETTTEEEEEETTTCCEE---------------EEEECCTTEEEEEEEEECTTSSEEEEE
T ss_pred             CCCCccceEEcCCC-CEEEEEeCCCeEEEEECCCCcce---------------eeeechhhcccccceeECCCCCeeccc
Confidence            34445567899999 78988888999999999987621               1112233334333  348999877742


Q ss_pred             -----------------------cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCE
Q 021484          107 -----------------------NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEY  162 (312)
Q Consensus       107 -----------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~  162 (312)
                                             .+..|++||+.++                + ...+..+...  +..++| +| +++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g----------------~-~~~l~~~~~~--~~~~~~-sp~dg~~  202 (388)
T 3pe7_A          143 EIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG----------------E-STVILQENQW--LGHPIY-RPYDDST  202 (388)
T ss_dssp             EEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC----------------C-EEEEEEESSC--EEEEEE-ETTEEEE
T ss_pred             cccCcccccccccchhhhhhccCCcceEEEEECCCC----------------c-eEEeecCCcc--ccccEE-CCCCCCE
Confidence                                   2367999999876                3 3444444433  889999 99 9998


Q ss_pred             EEEeccC------ceEEEEeccCCeeEEEeecCc--cceEEEEEcCCCCeEEEEeC-CC----cEEEccCCCCCCCCC--
Q 021484          163 VMSGSDC------GHLFIWKKKGGKLVRLMVGDR--HVVNQLEPHPHIPMFATCGI-EK----TVKLWAPMPTDFPPL--  227 (312)
Q Consensus       163 l~~~~~d------g~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~l~t~~~-d~----~i~iwd~~~~~~~~~--  227 (312)
                      |+....+      ..|.++|...++. ..+..+.  ..+..++|+|+|+.|+..+. ++    .|++||+.+++...+  
T Consensus       203 l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~  281 (388)
T 3pe7_A          203 VAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS  281 (388)
T ss_dssp             EEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE
T ss_pred             EEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc
Confidence            8776653      3788888875544 4444343  35788999999998765542 22    399999998864222  


Q ss_pred             -CCChh--hhhhhhccCCCCceeEEe---------cCCceEEEEEeccc
Q 021484          228 -PDNAE--KIMKANKQGREDHSRITL---------TPDVIMHVLRLQRR  264 (312)
Q Consensus       228 -~~~~~--~~~~~~~~~~~~~~l~s~---------~~d~~i~i~~~~~~  264 (312)
                       .....  .......+++++..++..         ..+..|++|++...
T Consensus       282 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~  330 (388)
T 3pe7_A          282 MPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG  330 (388)
T ss_dssp             ECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred             CCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence             21100  001112366776666532         45678999998764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.64  E-value=1.7e-14  Score=121.39  Aligned_cols=199  Identities=9%  Similarity=0.065  Sum_probs=129.7

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEcc-CCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe--EEEe-
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL--LISY-  106 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~s~-  106 (312)
                      ..+..++|+|++ ++|++++.+ .|.+|++. ++++...            ... ..+ +.+..++|+|+|++  ++++ 
T Consensus        40 ~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~------------~~~-~~~-g~~~~~~~spdg~~l~~~~~~  103 (365)
T 1jof_A           40 EPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHE------------ASH-PIG-GHPRANDADTNTRAIFLLAAK  103 (365)
T ss_dssp             CCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEE------------EEE-ECC-SSGGGGCTTSCCEEEEEEECS
T ss_pred             CCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEe------------eEe-ecC-CCCccEEECCCCCEEEEEEec
Confidence            357789999999 788888877 99999997 6653210            000 001 12345789999983  4443 


Q ss_pred             -------------cCCcEEEEEcCC-CcCCCCCcCCcccccCCCCCceEec--ccCCceeeEEEEecCCCCEEEEec-cC
Q 021484          107 -------------NDELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSG--HRNSQTVKGVNFFGPNDEYVMSGS-DC  169 (312)
Q Consensus       107 -------------~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~s~~~~~l~~~~-~d  169 (312)
                                   .++.+.+|++.. +                +....+..  +.....+.+++| +|+|++|+++. .+
T Consensus       104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~-spdG~~l~~~~~~~  166 (365)
T 1jof_A          104 QPPYAVYANPFYKFAGYGNVFSVSETG----------------KLEKNVQNYEYQENTGIHGMVF-DPTETYLYSADLTA  166 (365)
T ss_dssp             STTCCEEEEEESSSCCEEEEEEECTTC----------------CEEEEEEEEECCTTCCEEEEEE-CTTSSEEEEEETTT
T ss_pred             CCcceeccceeecCCceEEEEccCCCC----------------cCcceEeeEEeCCCCcceEEEE-CCCCCEEEEEcCCC
Confidence                         478899999964 3                23222221  111133889999 99999888765 46


Q ss_pred             ceEEEEecc-CCeeE--EEee--cCccceEEEEEcCCCCeEEEEeC-CCcEEEccCC--CCCC-------CCCCCCh---
Q 021484          170 GHLFIWKKK-GGKLV--RLMV--GDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPM--PTDF-------PPLPDNA---  231 (312)
Q Consensus       170 g~v~iwd~~-~~~~~--~~~~--~~~~~v~~~~~~p~~~~l~t~~~-d~~i~iwd~~--~~~~-------~~~~~~~---  231 (312)
                      +.|++|++. +++..  ..+.  .|...+..++|+|+|+++++++. +++|.+|++.  ++++       ..++...   
T Consensus       167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~  246 (365)
T 1jof_A          167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDR  246 (365)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCB
T ss_pred             CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCc
Confidence            899999998 67653  3333  23567899999999999877774 7899999764  3432       1222110   


Q ss_pred             hh------hhhhhc-cCCCCceeEEecCC-c-----eEEEEEec
Q 021484          232 EK------IMKANK-QGREDHSRITLTPD-V-----IMHVLRLQ  262 (312)
Q Consensus       232 ~~------~~~~~~-~~~~~~~l~s~~~d-~-----~i~i~~~~  262 (312)
                      ..      ...... ++++++++++...+ .     .+.+|++.
T Consensus       247 ~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          247 DPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             CTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             ccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence            10      123344 78888877665433 2     89999986

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.64  E-value=1.8e-14  Score=130.77  Aligned_cols=191  Identities=10%  Similarity=0.012  Sum_probs=126.8

Q ss_pred             EEEEc--CCCCcEEEEE-eCCCeEEEEEcc--C-CeecCCCCCCCCcccccccccccC-----CCccEEEEEEccCCCeE
Q 021484           35 AIVID--PRNPNYFAVG-GSDEYARVYDIR--K-CHWYSPISSDTPVDTFCPRHLIGK-----NNIHITGLAYSNTSELL  103 (312)
Q Consensus        35 ~~~~~--p~~~~~l~~~-~~dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l  103 (312)
                      ...|+  |++..+|+.+ ..+..|.++++.  . ++.               ..+ ..     |...+..++|+|+|+.|
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~---------------~~l-~~~~~~~~~~~~~~~~~spDg~~l  144 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP---------------RPL-TPVSAVGGGLRWADPVLLPERGEV  144 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC---------------EEC-SCCCCSTTCEEEEEEEEETTTTEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC---------------Eec-cCCccCCCCccccCcEECCCCCEE
Confidence            55565  9994415444 346667777765  2 331               111 12     56678899999999988


Q ss_pred             EEe-cC----------CcEEEEEcCC------CcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEE
Q 021484          104 ISY-ND----------ELVYLFEKNM------GLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMS  165 (312)
Q Consensus       104 ~s~-~d----------~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~  165 (312)
                      +++ .+          ..|++||+.+      +                .. ..+. .+..  .+..++| +|+|++|+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------------~~-~~l~~~~~~--~~~~~~~-SpDG~~la~  204 (662)
T 3azo_A          145 WCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS----------------AV-RELSDDAHR--FVTGPRL-SPDGRQAVW  204 (662)
T ss_dssp             EEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG----------------GS-EESSCSCSS--EECCCEE-CTTSSEEEE
T ss_pred             EEEEecccCCCCCCceeEEEEEECCCCccccCC----------------ce-eEEEecCCC--cccCceE-CCCCCEEEE
Confidence            775 34          5799999987      4                22 2333 3333  3788899 999999987


Q ss_pred             eccC--------ceEEEEecc-CC---eeEEEeecCccceEEEEEcCCCCeEEEEeCCC--cEEEccCCCCCCCCCCCCh
Q 021484          166 GSDC--------GHLFIWKKK-GG---KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK--TVKLWAPMPTDFPPLPDNA  231 (312)
Q Consensus       166 ~~~d--------g~v~iwd~~-~~---~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~--~i~iwd~~~~~~~~~~~~~  231 (312)
                      ++.+        ..|++||+. ++   +.......|...+..+.|+|+|+++++++.++  .|.+||+.+++...+..+.
T Consensus       205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~  284 (662)
T 3azo_A          205 LAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE  284 (662)
T ss_dssp             EEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS
T ss_pred             EECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc
Confidence            7754        479999998 57   44444455678899999999999888888888  6677777666543333222


Q ss_pred             hhh--------hhhhccCCCCceeEEecCCceEEEEEec
Q 021484          232 EKI--------MKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       232 ~~~--------~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      ...        .....+.+++.++++... +..++|.+.
T Consensus       285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          285 EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred             ccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence            221        112223457778888888 889999554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.63  E-value=7.9e-14  Score=115.61  Aligned_cols=201  Identities=11%  Similarity=0.107  Sum_probs=135.7

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCC------------------------CeEEEEEccCCeecCCCCCCCCccccccccccc
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSD------------------------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG   85 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      -..+.+++++|++ +++++...+                        +.|.+||..++++.              ...-.
T Consensus        23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~--------------~~~~~   87 (329)
T 3fvz_A           23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL--------------QSSGK   87 (329)
T ss_dssp             CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--------------EEECT
T ss_pred             cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--------------eccCC
Confidence            4579999999998 788887776                        47999999877632              11112


Q ss_pred             CCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe---------cccCCceeeEEEE
Q 021484           86 KNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---------GHRNSQTVKGVNF  155 (312)
Q Consensus        86 ~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~v~~  155 (312)
                      .+...+..++++|+|+++++. .++.|++|+.....               ..+..+.         ++..  ....+++
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~---------------~~~~~~~~~~~~g~~~~~~~--~P~~ia~  150 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE---------------GPLLILGRSMQPGSDQNHFC--QPTDVAV  150 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS---------------CCSEEESBTTBCCCSTTCCS--SEEEEEE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe---------------EEEEEecccCCCCCCccccC--CCcEEEE
Confidence            344578899999999988876 58999999986531               1233331         2222  3789999


Q ss_pred             ecC-CCCEEEEec-cCceEEEEeccCCeeEEEeecC----------ccceEEEEEcCC-CCeEEEEeCCCcEEEccCCCC
Q 021484          156 FGP-NDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGD----------RHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       156 ~s~-~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~----------~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~  222 (312)
                       +| +++++++.+ .++.|++|+ .+++.+..+...          -..+..++++|+ +.++++...++.|++|++.++
T Consensus       151 -~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G  228 (329)
T 3fvz_A          151 -EPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK  228 (329)
T ss_dssp             -CTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred             -eCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC
Confidence             88 788888886 699999999 457777766422          234789999998 677777778999999999855


Q ss_pred             CC-CCC--CCChhhhhhhhccCC------CCceeEEecCCceEEEEEecccC
Q 021484          223 DF-PPL--PDNAEKIMKANKQGR------EDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       223 ~~-~~~--~~~~~~~~~~~~~~~------~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      +. ..+  ..+...+.. ..+.+      ++...++...+..+++|++....
T Consensus       229 ~~~~~~~~~~~~~~~~~-~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~  279 (329)
T 3fvz_A          229 EFVREIKHASFGRNVFA-ISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE  279 (329)
T ss_dssp             CEEEEECCTTTTTCEEE-EEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred             cEEEEEeccccCCCcce-eeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence            43 222  112222211 11222      33444445556688999876654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.62  E-value=2.2e-13  Score=110.45  Aligned_cols=204  Identities=8%  Similarity=0.118  Sum_probs=141.3

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE-ccCCCeEEE
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-SNTSELLIS  105 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s  105 (312)
                      .+|-..+.+++++|++ +++++...++.|++||..... ..         .+........+...+..+++ .++++++++
T Consensus        26 ~g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g~~-~~---------~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~   94 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGRF-KF---------QFGECGKRDSQLLYPNRVAVVRNSGDIIVT   94 (286)
T ss_dssp             TTCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTSCE-EE---------EECCBSSSTTCBSSEEEEEEETTTTEEEEE
T ss_pred             CCccCCCceEEECCCC-CEEEEECCCCEEEEECCCCcE-EE---------EecccCCCcccccCceEEEEEcCCCeEEEE
Confidence            3566789999999998 788888889999999987332 11         11110011234456889999 577887777


Q ss_pred             e-c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484          106 Y-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       106 ~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                      . . ++.|++||.. +                +....+.... ...+..+++ +++++++++...++.|.+||.. ++.+
T Consensus        95 ~~~~~~~i~~~d~~-g----------------~~~~~~~~~~-~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~~-g~~~  154 (286)
T 1q7f_A           95 ERSPTHQIQIYNQY-G----------------QFVRKFGATI-LQHPRGVTV-DNKGRIIVVECKVMRVIIFDQN-GNVL  154 (286)
T ss_dssp             ECGGGCEEEEECTT-S----------------CEEEEECTTT-CSCEEEEEE-CTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             cCCCCCEEEEECCC-C----------------cEEEEecCcc-CCCceEEEE-eCCCCEEEEECCCCEEEEEcCC-CCEE
Confidence            6 3 8999999943 3                3444443221 123789998 8999988888888999999965 6666


Q ss_pred             EEee--cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCC--hhhhhhhhccCCCCceeEEecCCc-eEEE
Q 021484          184 RLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDN--AEKIMKANKQGREDHSRITLTPDV-IMHV  258 (312)
Q Consensus       184 ~~~~--~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~-~i~i  258 (312)
                      ..+.  .+...+..++++|+++++++...++.|++|+.....+..+...  ...+ ......+++.++++...++ .|.+
T Consensus       155 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p-~~i~~d~~G~l~v~~~~~~~~i~~  233 (286)
T 1q7f_A          155 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYP-IGVGINSNGEILIADNHNNFNLTI  233 (286)
T ss_dssp             EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSE-EEEEECTTCCEEEEECSSSCEEEE
T ss_pred             EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCC-cEEEECCCCCEEEEeCCCCEEEEE
Confidence            6654  3445689999999999888888899999999866543333221  1112 2334566778888888776 9999


Q ss_pred             EEec
Q 021484          259 LRLQ  262 (312)
Q Consensus       259 ~~~~  262 (312)
                      |+..
T Consensus       234 ~~~~  237 (286)
T 1q7f_A          234 FTQD  237 (286)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            9843

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.60  E-value=8.4e-14  Score=115.45  Aligned_cols=206  Identities=11%  Similarity=0.050  Sum_probs=138.4

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc---cccccCCCccEEEEEEcc-CCCeEEE
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP---RHLIGKNNIHITGLAYSN-TSELLIS  105 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~-~~~~l~s  105 (312)
                      -.....++++|++ +++++...++.|++|+......        .+..+..   ...-..+...+..++++| ++.++++
T Consensus        90 ~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~--------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~  160 (329)
T 3fvz_A           90 FYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEG--------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS  160 (329)
T ss_dssp             CSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSC--------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE
T ss_pred             cCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeE--------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE
Confidence            4468899999999 7888888899999999864420        0111100   000023345688999999 7888777


Q ss_pred             e--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC--------CceeeEEEEecCC-CCEEEEeccCceEEE
Q 021484          106 Y--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN--------SQTVKGVNFFGPN-DEYVMSGSDCGHLFI  174 (312)
Q Consensus       106 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~v~~~s~~-~~~l~~~~~dg~v~i  174 (312)
                      .  .++.|++|+...                 ..+..+.....        ......+++ +++ +.++++...++.|++
T Consensus       161 d~~~~~~I~~~~~~g-----------------~~~~~~~~~g~~~~~~~~~~~~p~gia~-d~~~g~l~v~d~~~~~I~~  222 (329)
T 3fvz_A          161 DGYCNSRIVQFSPSG-----------------KFVTQWGEESSGSSPRPGQFSVPHSLAL-VPHLDQLCVADRENGRIQC  222 (329)
T ss_dssp             ECSSCCEEEEECTTS-----------------CEEEEECEECCSSSCCTTEESCEEEEEE-ETTTTEEEEEETTTTEEEE
T ss_pred             eCCCCCeEEEEcCCC-----------------CEEEEeccCCCCCCCCCcccCCCcEEEE-ECCCCEEEEEECCCCEEEE
Confidence            5  489999999543                 33333321110        012788999 888 788888888999999


Q ss_pred             EeccCCeeEEEee--cCccceEEEEEcCCCCeEEEE-------eCCCcEEEccCCCCCCCC-C---CCChhhhhhhhccC
Q 021484          175 WKKKGGKLVRLMV--GDRHVVNQLEPHPHIPMFATC-------GIEKTVKLWAPMPTDFPP-L---PDNAEKIMKANKQG  241 (312)
Q Consensus       175 wd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~t~-------~~d~~i~iwd~~~~~~~~-~---~~~~~~~~~~~~~~  241 (312)
                      |+..+++.+..+.  .+...+..++|+| +..+++.       ..+.+|++|++.++++.. +   ..+.... ....+.
T Consensus       223 ~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p-~~ia~~  300 (329)
T 3fvz_A          223 FKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMP-HDIVAS  300 (329)
T ss_dssp             EETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSE-EEEEEC
T ss_pred             EECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCe-eEEEEC
Confidence            9999899888874  3556788999999 3333333       334589999988776422 2   1222222 223356


Q ss_pred             CCCceeEEecCCceEEEEEeccc
Q 021484          242 REDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       242 ~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      +++.++++...++.|++|++...
T Consensus       301 ~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          301 EDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             TTSEEEEEESSSCCEEEEEEEEC
T ss_pred             CCCCEEEEECCCCEEEEEeCCcc
Confidence            67788888888888999887643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.59  E-value=3.4e-14  Score=128.90  Aligned_cols=199  Identities=12%  Similarity=0.143  Sum_probs=130.1

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCC----------CeEEEEEccC------CeecCCCCCCCCccccccccccc-CCCccE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSD----------EYARVYDIRK------CHWYSPISSDTPVDTFCPRHLIG-KNNIHI   91 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~d----------g~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i   91 (312)
                      |...+.+++|+|++ +.|+.++.+          ..|++||+.+      ++               ...+ . .+...+
T Consensus       128 ~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------------~~~l-~~~~~~~~  190 (662)
T 3azo_A          128 GGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA---------------VREL-SDDAHRFV  190 (662)
T ss_dssp             TCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG---------------SEES-SCSCSSEE
T ss_pred             CCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc---------------eeEE-EecCCCcc
Confidence            46678999999999 778777766          5899999987      43               1122 2 344567


Q ss_pred             EEEEEccCCCeEEEe-cC--------CcEEEEEcC-CCcCCCCCcCCcccccCCCCCceE-ecccCCceeeEEEEecCCC
Q 021484           92 TGLAYSNTSELLISY-ND--------ELVYLFEKN-MGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGPND  160 (312)
Q Consensus        92 ~~~~~~~~~~~l~s~-~d--------~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~s~~~  160 (312)
                      ..++|+|+|+.|+.. .+        ..|++||+. ++.              ......+ .++...  +..++| +|+|
T Consensus       191 ~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~--------------~~~~~~l~~~~~~~--~~~~~~-spdg  253 (662)
T 3azo_A          191 TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR--------------FADTRTLLGGPEEA--IAQAEW-APDG  253 (662)
T ss_dssp             CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC--------------EEEEEEEEEETTBC--EEEEEE-CTTS
T ss_pred             cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc--------------ccccEEeCCCCCce--EcceEE-CCCC
Confidence            789999999988764 34        379999997 330              0022233 333433  889999 9999


Q ss_pred             CEEEEeccCc--eEEEEeccCCeeEEEeecCccc--------eEEEEEcCCCCeEEEEeCCCcEEEc--cCCCCCCCCCC
Q 021484          161 EYVMSGSDCG--HLFIWKKKGGKLVRLMVGDRHV--------VNQLEPHPHIPMFATCGIEKTVKLW--APMPTDFPPLP  228 (312)
Q Consensus       161 ~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~--------v~~~~~~p~~~~l~t~~~d~~i~iw--d~~~~~~~~~~  228 (312)
                      ++++++..++  .|++||+.+++.......+...        +..++|+|+++++++++. +.++||  |+.++.+..+.
T Consensus       254 ~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~  332 (662)
T 3azo_A          254 SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAA  332 (662)
T ss_dssp             CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECC
T ss_pred             eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEec
Confidence            9888888888  6777777677655433333222        467889999999999998 999999  66666555554


Q ss_pred             CChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          229 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      .+...+........+.-.+++.+.+....+|.+.
T Consensus       333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d  366 (662)
T 3azo_A          333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELD  366 (662)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence            4433332110112222334455666655666543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.54  E-value=1.1e-12  Score=105.39  Aligned_cols=197  Identities=10%  Similarity=-0.007  Sum_probs=133.9

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE  109 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~  109 (312)
                      ..+.++++++++ +++++.. ++.|.+||.......               .+.......+..++++++|+++++. .++
T Consensus        67 ~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~~---------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~  129 (270)
T 1rwi_B           67 YQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQT---------------VLPFDGLNYPEGLAVDTQGAVYVADRGNN  129 (270)
T ss_dssp             CSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCCE---------------ECCCCSCSSEEEEEECTTCCEEEEEGGGT
T ss_pred             CCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceEe---------------eeecCCcCCCcceEECCCCCEEEEECCCC
Confidence            457889999988 6666655 889999998755311               1111223568899999999977775 588


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  189 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  189 (312)
                      .|.+|+..+.                ..........  ..+.++++ +++++++++...++.|.+||............+
T Consensus       130 ~i~~~~~~~~----------------~~~~~~~~~~--~~p~~i~~-~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~  190 (270)
T 1rwi_B          130 RVVKLAAGSK----------------TQTVLPFTGL--NDPDGVAV-DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD  190 (270)
T ss_dssp             EEEEECTTCC----------------SCEECCCCSC--CSCCCEEE-CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS
T ss_pred             EEEEEECCCc----------------eeEeeccccC--CCceeEEE-eCCCCEEEEECCCCEEEEEecCCCceEeecccC
Confidence            9999975443                1111111111  22778998 899998777777899999998876544333333


Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCC-ChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       190 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ...+..++++++|.++++...++.|.+|+..+........ +...+ ....+.+++.++++...++.|+++++...
T Consensus       191 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p-~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          191 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTP-LAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCE-EEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCc-eeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            3678899999999878777778999999987765422221 11112 22335566778888888888888876554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.54  E-value=1.1e-12  Score=119.92  Aligned_cols=234  Identities=10%  Similarity=0.089  Sum_probs=143.8

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCC-C----eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSD-E----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  103 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~d-g----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  103 (312)
                      |...+..++|||+| ++||.+..+ |    .|++||+.+++..              .....  ...+..++|+|||+.|
T Consensus       123 ~~~~~~~~~~SPDg-~~la~~~~~~G~~~~~i~v~d~~tg~~~--------------~~~~~--~~~~~~~~wspDg~~l  185 (710)
T 2xdw_A          123 GTVALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKEL--------------PDVLE--RVKFSCMAWTHDGKGM  185 (710)
T ss_dssp             SCEEEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEE--------------EEEEE--EECSCCEEECTTSSEE
T ss_pred             CCEEEEEEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCC--------------ccccc--CcccceEEEEeCCCEE
Confidence            45578899999999 677665443 3    8999999988732              11101  1125678999999977


Q ss_pred             EEe-cCCc----------------EEEEEcCCCcCCCCCcCCcccccCCCC--CceEecccCCceeeEEEEecCCCCEEE
Q 021484          104 ISY-NDEL----------------VYLFEKNMGLGPSPLSLSPEDLQKREE--PQVYSGHRNSQTVKGVNFFGPNDEYVM  164 (312)
Q Consensus       104 ~s~-~d~~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~~~s~~~~~l~  164 (312)
                      +.+ .++.                |++|++.++                ..  ...+........+..+.| +|+|++|+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~----------------~~~~~~v~~~~~~~~~~~~~~~-SpDg~~l~  248 (710)
T 2xdw_A          186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD----------------QSEDILCAEFPDEPKWMGGAEL-SDDGRYVL  248 (710)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC----------------GGGCEEEECCTTCTTCEEEEEE-CTTSCEEE
T ss_pred             EEEEECCccccccccccccCCCCEEEEEECCCC----------------cccceEEeccCCCCeEEEEEEE-cCCCCEEE
Confidence            765 4544                999999775                22  122233222233778898 99999998


Q ss_pred             Eecc-----CceEEEEeccC------Ce-eEEEeecCccceEEEEEcCCCCeEEEEeCC----CcEEEccCCCCC---CC
Q 021484          165 SGSD-----CGHLFIWKKKG------GK-LVRLMVGDRHVVNQLEPHPHIPMFATCGIE----KTVKLWAPMPTD---FP  225 (312)
Q Consensus       165 ~~~~-----dg~v~iwd~~~------~~-~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d----~~i~iwd~~~~~---~~  225 (312)
                      ..+.     +..|++||+.+      ++ ....+..+...+.. .|+|+|+.|+..+..    ..|.+|++.+..   ..
T Consensus       249 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~  327 (710)
T 2xdw_A          249 LSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK  327 (710)
T ss_dssp             EEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE
T ss_pred             EEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccce
Confidence            7764     57899999986      43 35566666655554 488999887666543    369999988763   23


Q ss_pred             CCCCChh-hhhhhhccCCCCceeEEecCCceEEE--EEecccCcccee----------EeecCCCccC----CCCCCCeE
Q 021484          226 PLPDNAE-KIMKANKQGREDHSRITLTPDVIMHV--LRLQRRQTLAYR----------ERRYNAADFE----SDEEEGET  288 (312)
Q Consensus       226 ~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~i--~~~~~~~~~~~~----------~~~~~~~~~~----~~~~~~~v  288 (312)
                      .+..+.. ..+....+.+++.++++...++..++  |++..+......          ..+++...+.    +....+.+
T Consensus       328 ~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i  407 (710)
T 2xdw_A          328 VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGII  407 (710)
T ss_dssp             EEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEE
T ss_pred             eccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEE
Confidence            3333332 23333334456677888888875554  454233211111          2223333332    33455678


Q ss_pred             EEeecCCCC
Q 021484          289 YLLGFSDSD  297 (312)
Q Consensus       289 ~~~~~~~~~  297 (312)
                      |.+|...+.
T Consensus       408 ~~~d~~tg~  416 (710)
T 2xdw_A          408 YHCDLTKEE  416 (710)
T ss_dssp             EEEETTSSS
T ss_pred             EEEECCCCc
Confidence            888876554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.53  E-value=4.9e-14  Score=119.51  Aligned_cols=191  Identities=8%  Similarity=-0.039  Sum_probs=121.8

Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEE-------------------EE
Q 021484           35 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITG-------------------LA   95 (312)
Q Consensus        35 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------~~   95 (312)
                      .+.|+|++ +.|+.++.++.|++||+.+++.....               ..+......                   +.
T Consensus        85 ~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~~~~---------------~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~  148 (396)
T 3c5m_A           85 GGFISTDE-RAFFYVKNELNLMKVDLETLEEQVIY---------------TVDEEWKGYGTWVANSDCTKLVGIEILKRD  148 (396)
T ss_dssp             TCEECTTS-SEEEEEETTTEEEEEETTTCCEEEEE---------------ECCTTEEEEEEEEECTTSSEEEEEEEEGGG
T ss_pred             cceECCCC-CEEEEEEcCCcEEEEECCCCCcEEEE---------------ecccccCCCCCEEEeccCCccccccccccc
Confidence            47899999 78888888889999999877532111               111111111                   35


Q ss_pred             EccCCCeEEEe------cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEecc
Q 021484           96 YSNTSELLISY------NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSD  168 (312)
Q Consensus        96 ~~~~~~~l~s~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~  168 (312)
                      |+|+++.++..      .+..|++||+.++                +... +..+...  +..+.| +| +++.|+..+.
T Consensus       149 ~spdg~~~~~~~~~~~~~~~~l~~~d~~~g----------------~~~~-~~~~~~~--~~~~~~-sp~dg~~l~~~~~  208 (396)
T 3c5m_A          149 WQPLTSWEKFAEFYHTNPTCRLIKVDIETG----------------ELEV-IHQDTAW--LGHPIY-RPFDDSTVGFCHE  208 (396)
T ss_dssp             CCCCCSHHHHHHHHHTCCCEEEEEEETTTC----------------CEEE-EEEESSC--EEEEEE-ETTEEEEEEEEEC
T ss_pred             cCCCCcceeeeeeccCCCcceEEEEECCCC----------------cEEe-eccCCcc--cccceE-CCCCCCEEEEEec
Confidence            67888755442      3567999999876                3333 3334433  888999 88 7887766544


Q ss_pred             C------ceEEEEeccCCeeEEEeecC--ccceEEEEEcCCCCeEEEEeCC-----CcEEEccCCCCCCCCCCCChhhhh
Q 021484          169 C------GHLFIWKKKGGKLVRLMVGD--RHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDFPPLPDNAEKIM  235 (312)
Q Consensus       169 d------g~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~  235 (312)
                      +      ..|++||+..++.. .+..+  ...+..++|+|+|+.|+.++.+     +.|++||+.+++...+..... . 
T Consensus       209 ~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~-  285 (396)
T 3c5m_A          209 GPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-C-  285 (396)
T ss_dssp             SCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-E-
T ss_pred             CCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-C-
Confidence            3      46889998766543 33323  2357889999999987776543     459999998876432211111 1 


Q ss_pred             hhhccCC-CCceeEEec----------------CCceEEEEEecccC
Q 021484          236 KANKQGR-EDHSRITLT----------------PDVIMHVLRLQRRQ  265 (312)
Q Consensus       236 ~~~~~~~-~~~~l~s~~----------------~d~~i~i~~~~~~~  265 (312)
                      . ..+++ ++.+++..+                .+..+++|++....
T Consensus       286 ~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          286 S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred             C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence            1 34666 777776643                34788999876543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.53  E-value=4.3e-14  Score=119.86  Aligned_cols=198  Identities=9%  Similarity=0.004  Sum_probs=126.0

Q ss_pred             cceEEEEEcCCCCcEEEEEe-CC--CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           31 IRLNAIVIDPRNPNYFAVGG-SD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      ..+..++|+|+| +.|+... .+  ..|.+||+.+++...               +...+......+.|+|+|+.|+.. 
T Consensus        36 ~~~~~~~~SpdG-~~l~~~~~~~g~~~l~~~d~~~~~~~~---------------l~~~~~~~~~~~~~spdg~~l~~~~   99 (396)
T 3c5m_A           36 NYFYQKCFTQDG-KKLLFAGDFDGNRNYYLLNLETQQAVQ---------------LTEGKGDNTFGGFISTDERAFFYVK   99 (396)
T ss_dssp             CCTTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTTEEEE---------------CCCSSCBCTTTCEECTTSSEEEEEE
T ss_pred             eeeecCcCCCCC-CEEEEEEecCCCceEEEEECCCCcEEE---------------eecCCCCccccceECCCCCEEEEEE
Confidence            346788999999 5655543 33  468888988776321               111222222236899999988775 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeE-------------------EEEecCCCCEEEEe-
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG-------------------VNFFGPNDEYVMSG-  166 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------v~~~s~~~~~l~~~-  166 (312)
                      .++.|++||+.++                +.......+...  ...                   +.| +|+++.++.+ 
T Consensus       100 ~~~~l~~~d~~~~----------------~~~~~~~~~~~~--~~~g~~l~~~~~~~~~~~~~~~~~~-spdg~~~~~~~  160 (396)
T 3c5m_A          100 NELNLMKVDLETL----------------EEQVIYTVDEEW--KGYGTWVANSDCTKLVGIEILKRDW-QPLTSWEKFAE  160 (396)
T ss_dssp             TTTEEEEEETTTC----------------CEEEEEECCTTE--EEEEEEEECTTSSEEEEEEEEGGGC-CCCCSHHHHHH
T ss_pred             cCCcEEEEECCCC----------------CcEEEEeccccc--CCCCCEEEeccCCcccccccccccc-CCCCcceeeee
Confidence            5778999999876                333333322211  111                   345 7788877654 


Q ss_pred             ----ccCceEEEEeccCCeeEEEeecCccceEEEEEcC-CCCeEEEEeCC------CcEEEccCCCCCCCCCCCCh-hhh
Q 021484          167 ----SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP-HIPMFATCGIE------KTVKLWAPMPTDFPPLPDNA-EKI  234 (312)
Q Consensus       167 ----~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~-~~~  234 (312)
                          ..+..|++||+.+++..... .+...+..+.|+| ++..++..+.+      ..|.+|++.++....+..+. ...
T Consensus       161 ~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~  239 (396)
T 3c5m_A          161 FYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGES  239 (396)
T ss_dssp             HHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEE
T ss_pred             eccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcc
Confidence                46778999999988765444 4566789999999 78876666543      46888998777654443322 222


Q ss_pred             hhhhccCCCCceeEEecCC-----ceEEEEEeccc
Q 021484          235 MKANKQGREDHSRITLTPD-----VIMHVLRLQRR  264 (312)
Q Consensus       235 ~~~~~~~~~~~~l~s~~~d-----~~i~i~~~~~~  264 (312)
                      +....+++++..++..+.+     +.+++|++...
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             ccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence            3334578888876665433     45999987654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.53  E-value=3.4e-12  Score=105.77  Aligned_cols=198  Identities=8%  Similarity=0.094  Sum_probs=132.4

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-  107 (312)
                      +...+.+++|+|++ ++++++..++.|.+||..+++..               .+...+...+.+++++|+|+++++.. 
T Consensus        43 ~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~~---------------~~~~~~~~~~~~i~~~~dg~l~v~~~~  106 (333)
T 2dg1_A           43 KGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIK---------------RPFVSHKANPAAIKIHKDGRLFVCYLG  106 (333)
T ss_dssp             SCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE---------------EEEECSSSSEEEEEECTTSCEEEEECT
T ss_pred             cCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcEE---------------EEeeCCCCCcceEEECCCCcEEEEeCC
Confidence            44567899999998 78888888999999999877521               11123456799999999999877764 


Q ss_pred             C----CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc------CceEEEEec
Q 021484          108 D----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKK  177 (312)
Q Consensus       108 d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~------dg~v~iwd~  177 (312)
                      +    +.|++||..++                .....+........+.++++ +++++++++...      .+.|..++.
T Consensus       107 ~~~~~~~i~~~d~~~~----------------~~~~~~~~~~~~~~~~~i~~-d~~g~l~v~~~~~~~~~~~~~l~~~~~  169 (333)
T 2dg1_A          107 DFKSTGGIFAATENGD----------------NLQDIIEDLSTAYCIDDMVF-DSKGGFYFTDFRGYSTNPLGGVYYVSP  169 (333)
T ss_dssp             TSSSCCEEEEECTTSC----------------SCEEEECSSSSCCCEEEEEE-CTTSCEEEEECCCBTTBCCEEEEEECT
T ss_pred             CCCCCceEEEEeCCCC----------------EEEEEEccCccCCcccceEE-CCCCCEEEEeccccccCCCceEEEEeC
Confidence            5    58999998775                22212221111133889998 899988877654      367777777


Q ss_pred             cCCeeEEEeecCccceEEEEEcCCCCeE-EEEeCCCcEEEccCCC-CC-CCC--------CCCChhhhhhhhccCCCCce
Q 021484          178 KGGKLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMP-TD-FPP--------LPDNAEKIMKANKQGREDHS  246 (312)
Q Consensus       178 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~-~~-~~~--------~~~~~~~~~~~~~~~~~~~~  246 (312)
                      .+++... +..+...+..++|+|+++.+ ++.+.++.|.+|++.+ +. ...        +.++  .......+.+++.+
T Consensus       170 ~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~d~~G~l  246 (333)
T 2dg1_A          170 DFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNL  246 (333)
T ss_dssp             TSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCE
T ss_pred             CCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC--CCCCceEECCCCCE
Confidence            6555433 32233457899999999865 4555678999999864 22 111        1111  11222345567777


Q ss_pred             eEEecCCceEEEEEec
Q 021484          247 RITLTPDVIMHVLRLQ  262 (312)
Q Consensus       247 l~s~~~d~~i~i~~~~  262 (312)
                      +++...++.|.+|+..
T Consensus       247 ~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          247 YVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EEEEETTTEEEEECTT
T ss_pred             EEEEcCCCEEEEECCC
Confidence            7877778889999863

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.53  E-value=3.4e-13  Score=112.41  Aligned_cols=180  Identities=12%  Similarity=0.141  Sum_probs=116.0

Q ss_pred             ceEEEEEcCCCCcEEEEEeCC---C--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           32 RLNAIVIDPRNPNYFAVGGSD---E--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .+..++|+|+| +.|+..+.+   +  .|.+|++.+++..               .+ ..+.. +..++|+|+|+.|+..
T Consensus        60 ~~~~~~~SpDg-~~la~~~~~~~~~~~~l~~~~~~~g~~~---------------~l-~~~~~-~~~~~wspdg~~l~~~  121 (347)
T 2gop_A           60 NATMPRISPDG-KKIAFMRANEEKKVSEIWVADLETLSSK---------------KI-LEAKN-IRSLEWNEDSRKLLIV  121 (347)
T ss_dssp             SCEEEEECTTS-SEEEEEEEETTTTEEEEEEEETTTTEEE---------------EE-EEESE-EEEEEECTTSSEEEEE
T ss_pred             cCCCeEECCCC-CEEEEEEeccCCCcceEEEEECCCCceE---------------EE-EcCCC-ccceeECCCCCEEEEE
Confidence            47789999999 667666543   3  3777788776521               11 11223 8899999999977764


Q ss_pred             c-C---------------------------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484          107 N-D---------------------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus       107 ~-d---------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                      . +                           ..|++||+.++                +.++.+.. . .  +..++| +|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~----------------~~~~~l~~-~-~--~~~~~~-sp  180 (347)
T 2gop_A          122 GFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE----------------EVIEEFEK-P-R--FSSGIW-HR  180 (347)
T ss_dssp             EECCCC---------CCCC---------CEEEEEEEETTTT----------------EEEEEEEE-E-T--TCEEEE-ET
T ss_pred             EccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC----------------eEEeeecC-C-C--cccccC-CC
Confidence            3 2                           46889998776                34244444 2 3  788999 89


Q ss_pred             CCCEEEEeccC---------ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC--------CcEEEccCCC
Q 021484          159 NDEYVMSGSDC---------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--------KTVKLWAPMP  221 (312)
Q Consensus       159 ~~~~l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d--------~~i~iwd~~~  221 (312)
                      ++ +++++..+         ..|+++|  +++.. .+..+ ..+..+  +|+|+.|+.++.+        ..|.+||  +
T Consensus       181 dg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~  251 (347)
T 2gop_A          181 DK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G  251 (347)
T ss_dssp             TE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S
T ss_pred             Ce-EEEEEecccccccccccccEEEeC--CCceE-EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C
Confidence            99 77777543         2455555  55543 44334 455544  9999998877744        3688888  4


Q ss_pred             CCCCCCC-CChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          222 TDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       222 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      ++...+. .+...+.....++ ++ ++++++.++..++| +.
T Consensus       252 ~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          252 KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             CceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            4432222 2233332223456 66 88888999999999 87

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.52  E-value=1e-12  Score=105.56  Aligned_cols=197  Identities=9%  Similarity=-0.017  Sum_probs=130.5

Q ss_pred             ceEEEEEcCCCCcEEE-EEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCc
Q 021484           32 RLNAIVIDPRNPNYFA-VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL  110 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~  110 (312)
                      ...+++++|++ ++++ +...++.|..|+..+....               .....+...+.+++++++|+++++..++.
T Consensus        25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~   88 (270)
T 1rwi_B           25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTT---------------VLPFNGLYQPQGLAVDGAGTVYVTDFNNR   88 (270)
T ss_dssp             CEEEEEECTTC-CEEEEECSSSCEEEEECC-----E---------------ECCCCSCCSCCCEEECTTCCEEEEETTTE
T ss_pred             CccceEECCCC-CEEEEccCCCCcEEEecCCCcccc---------------eEeeCCcCCcceeEECCCCCEEEEcCCCE
Confidence            67899999998 6777 5477899999997654311               01012234567899999999777755889


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCc
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  190 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  190 (312)
                      |++||..+.                 ....+.... ...+..+++ +++++++++...++.|.+|+..+...........
T Consensus        89 i~~~d~~~~-----------------~~~~~~~~~-~~~p~~i~~-~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  149 (270)
T 1rwi_B           89 VVTLAAGSN-----------------NQTVLPFDG-LNYPEGLAV-DTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL  149 (270)
T ss_dssp             EEEECTTCS-----------------CCEECCCCS-CSSEEEEEE-CTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSC
T ss_pred             EEEEeCCCc-----------------eEeeeecCC-cCCCcceEE-CCCCCEEEEECCCCEEEEEECCCceeEeeccccC
Confidence            999998764                 222222111 123789998 8899988887788999999866554333222333


Q ss_pred             cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCC-CChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          191 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       191 ~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ..+..++++|+++++++...++.|.+|+..+....... ...... ......+++.++++...++.|.+|+....
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p-~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAP-WGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSE-EEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCc-eEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            46788999999998777777889999998876532211 111111 22335566777788878888999986543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.52  E-value=1.4e-12  Score=106.37  Aligned_cols=189  Identities=12%  Similarity=0.085  Sum_probs=122.4

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--  106 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--  106 (312)
                      +...+.+++++|++ +++++...++.|.+||..+++....          .. .........+..++++|+|+++++.  
T Consensus        67 ~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~~~~----------~~-~~~~~~~~~~~~i~~d~~G~l~vtd~~  134 (296)
T 3e5z_A           67 PSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGEWESI----------AD-SFEGKKLNSPNDVCLAPDGSLWFSDPT  134 (296)
T ss_dssp             SCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCCEEEE----------EC-EETTEECCCCCCEEECTTSCEEEEECS
T ss_pred             CCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCcEEEE----------ee-ccCCCCCCCCCCEEECCCCCEEEECCc
Confidence            34568999999998 7777777778999999977753110          00 0001112345679999999988862  


Q ss_pred             --c--------------CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc
Q 021484          107 --N--------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG  170 (312)
Q Consensus       107 --~--------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg  170 (312)
                        .              .+.|+.++.. +                 ....+..+...  ...++| +|+++.+++.+.++
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-----------------~~~~~~~~~~~--~~gi~~-s~dg~~lv~~~~~~  193 (296)
T 3e5z_A          135 YGIDKPEEGYGGEMELPGRWVFRLAPD-G-----------------TLSAPIRDRVK--PNGLAF-LPSGNLLVSDTGDN  193 (296)
T ss_dssp             HHHHCGGGSSCCCCCSSSCEEEEECTT-S-----------------CEEEEECCCSS--EEEEEE-CTTSCEEEEETTTT
T ss_pred             cccccccccccccccCCCcEEEEECCC-C-----------------CEEEeecCCCC--CccEEE-CCCCCEEEEeCCCC
Confidence              1              2355555543 2                 22333334333  788999 99999988888889


Q ss_pred             eEEEEecc-CCee---EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhcc-CCCCc
Q 021484          171 HLFIWKKK-GGKL---VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQ-GREDH  245 (312)
Q Consensus       171 ~v~iwd~~-~~~~---~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~  245 (312)
                      .|++|++. +++.   ...+..+...+..++++++|+++++.  ++.|.+|+..+..+..+..+.. + ....+ .+++.
T Consensus       194 ~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~-~-~~~~f~~~d~~  269 (296)
T 3e5z_A          194 ATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT-T-SNLCFGGPEGR  269 (296)
T ss_dssp             EEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC-C-CEEEEESTTSC
T ss_pred             eEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC-c-eeEEEECCCCC
Confidence            99999986 4554   23333345567789999999977666  7899999988554433332322 3 22223 45666


Q ss_pred             eeEEecCCc
Q 021484          246 SRITLTPDV  254 (312)
Q Consensus       246 ~l~s~~~d~  254 (312)
                      .|...+.++
T Consensus       270 ~L~v~t~~~  278 (296)
T 3e5z_A          270 TLYMTVSTE  278 (296)
T ss_dssp             EEEEEETTE
T ss_pred             EEEEEcCCe
Confidence            666666553

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.51  E-value=9e-13  Score=120.23  Aligned_cols=199  Identities=9%  Similarity=0.047  Sum_probs=126.9

Q ss_pred             CCccceEEEEEcCCCCcEEE-----EEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe
Q 021484           28 MNSIRLNAIVIDPRNPNYFA-----VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  102 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~-----~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  102 (312)
                      +|...+.+++|||+| ++||     .|+.+..|++||+.+++...            ...+ ...  ....++|+|+|+.
T Consensus       118 ~~~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl~tg~~~~------------~~~~-~~~--~~~~~~wspDg~~  181 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDVDSGEWSK------------VDVI-EGG--KYATPKWTPDSKG  181 (695)
T ss_dssp             SSCEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEEETTTCCBCS------------SCCB-SCC--TTCCCEECTTSSE
T ss_pred             CCCEEEEEEEECCCC-CEEEEEECCCCCceEEEEEEECCCCCCcC------------Cccc-Ccc--cccceEEecCCCE
Confidence            456679999999999 6666     33445689999999887320            0011 111  1157899999997


Q ss_pred             EEEe-cCCc-------------EEEEEcCCCcCCCCCcCCcccccCCCC--CceEecccCCceeeEEEEecCCCCEEEEe
Q 021484          103 LISY-NDEL-------------VYLFEKNMGLGPSPLSLSPEDLQKREE--PQVYSGHRNSQTVKGVNFFGPNDEYVMSG  166 (312)
Q Consensus       103 l~s~-~d~~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~~~s~~~~~l~~~  166 (312)
                      |+.+ .+..             |++|++.++                ..  ...+........+..+.| +|+|++|+..
T Consensus       182 l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~----------------~~~~~lv~~~~~~~~~~~~~~~-SpDG~~l~~~  244 (695)
T 2bkl_A          182 FYYEWLPTDPSIKVDERPGYTTIRYHTLGTE----------------PSKDTVVHERTGDPTTFLQSDL-SRDGKYLFVY  244 (695)
T ss_dssp             EEEEECCCCTTSCGGGGGGGCEEEEEETTSC----------------GGGCEEEECCCCCTTCEEEEEE-CTTSCCEEEE
T ss_pred             EEEEEecCCCCCccccCCCCCEEEEEECCCC----------------chhceEEEecCCCCEEEEEEEE-CCCCCEEEEE
Confidence            7775 4554             999999876                21  122332222123788998 9999999887


Q ss_pred             ccCc----eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEccCCCCCC---CCCCCCh-hhhh
Q 021484          167 SDCG----HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTDF---PPLPDNA-EKIM  235 (312)
Q Consensus       167 ~~dg----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~~~---~~~~~~~-~~~~  235 (312)
                      +.++    .|++++..+++. ..+..+...+....+ +++.+++...   .++.|.+|++.++..   ..+..+. ...+
T Consensus       245 ~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l  322 (695)
T 2bkl_A          245 ILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL  322 (695)
T ss_dssp             EEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred             EeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence            7666    788887665554 444445556666667 5555444443   257899999977642   2222222 2222


Q ss_pred             hhhccCCCCceeEEecCCceEEEEEec
Q 021484          236 KANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      ....+. ++.++++...|+..++|.+.
T Consensus       323 ~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          323 LSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            222233 56788888889988888765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.50  E-value=7.8e-12  Score=103.52  Aligned_cols=216  Identities=4%  Similarity=-0.071  Sum_probs=141.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |.+||..+.+....+..            ......+++++++ +++++...++.|.+||..++++...+....       
T Consensus        66 v~viD~~t~~~~~~i~~------------~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~-------  125 (328)
T 3dsm_A           66 IFAIDINTFKEVGRITG------------FTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPD-------  125 (328)
T ss_dssp             EEEEETTTCCEEEEEEC------------CSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTT-------
T ss_pred             EEEEECcccEEEEEcCC------------CCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCC-------
Confidence            35677776654333321            2357889999987 666665588999999999887432211000       


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                         ..+.......+++ .+++++++.  .++.|.++|+.++                +....+....   ....+++ ++
T Consensus       126 ---~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~----------------~~~~~i~~g~---~p~~i~~-~~  181 (328)
T 3dsm_A          126 ---MDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD----------------KVVDELTIGI---QPTSLVM-DK  181 (328)
T ss_dssp             ---CCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT----------------EEEEEEECSS---CBCCCEE-CT
T ss_pred             ---ccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC----------------eEEEEEEcCC---CccceEE-cC
Confidence               0011113445666 455556664  3889999999887                5555554322   2567888 89


Q ss_pred             CCCEEEEeccC----------ceEEEEeccCCeeEEEeecC-ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC
Q 021484          159 NDEYVMSGSDC----------GHLFIWKKKGGKLVRLMVGD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL  227 (312)
Q Consensus       159 ~~~~l~~~~~d----------g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~  227 (312)
                      ++++++++..+          +.|.++|..+++....+... ...+..++++|+++.+..+..  .|.+||+.++++...
T Consensus       182 dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~  259 (328)
T 3dsm_A          182 YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR  259 (328)
T ss_dssp             TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS
T ss_pred             CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee
Confidence            99987777665          79999999999887777533 236789999999998877754  999999988775321


Q ss_pred             C--CChhhhhhhhccCC-CCceeEEe----cCCceEEEEEec
Q 021484          228 P--DNAEKIMKANKQGR-EDHSRITL----TPDVIMHVLRLQ  262 (312)
Q Consensus       228 ~--~~~~~~~~~~~~~~-~~~~l~s~----~~d~~i~i~~~~  262 (312)
                      .  ...........+.+ ++.+.++.    ..++.|.+|+..
T Consensus       260 ~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          260 PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            1  11111222233555 56677777    677889999866

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.49  E-value=9.6e-13  Score=110.13  Aligned_cols=184  Identities=8%  Similarity=0.007  Sum_probs=126.2

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCc
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL  110 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~  110 (312)
                      .+++.+++++.. .++++|+.+ .+++|++...+-..... ...   +.+... ..+.. |+.++|  ++.+|+.+.++.
T Consensus        38 ~~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~-~~~---~~~~~~-~~lp~-V~~l~f--d~~~L~v~~~~~  107 (388)
T 1xip_A           38 ASLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSD-STP---LTFKWE-KEIPD-VIFVCF--HGDQVLVSTRNA  107 (388)
T ss_dssp             SCCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSS-SCC---CCCSEE-EECTT-EEEEEE--ETTEEEEEESSE
T ss_pred             ccccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccc-ccc---ccceEE-eeCCC-eeEEEE--CCCEEEEEcCCc
Confidence            368999999988 688888887 56669986543100000 000   111111 23455 999999  888888889999


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCc
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  190 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  190 (312)
                      |++||+.+.                ........+...  +.++.+..|   .+++++.||.|.+||+.+++...    +.
T Consensus       108 l~v~dv~sl----------------~~~~~~~~~~~~--v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~~  162 (388)
T 1xip_A          108 LYSLDLEEL----------------SEFRTVTSFEKP--VFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----LA  162 (388)
T ss_dssp             EEEEESSST----------------TCEEEEEECSSC--EEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----EE
T ss_pred             EEEEEchhh----------------hccCccceeecc--eeeEEecCC---CEEEEECCCCEEEEEccCCcccc----cc
Confidence            999999875                333445555544  788877433   28888999999999999887653    34


Q ss_pred             cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC---CCCC---------CChhhhhhhhccCCCCceeEEecC
Q 021484          191 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF---PPLP---------DNAEKIMKANKQGREDHSRITLTP  252 (312)
Q Consensus       191 ~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~---~~~~---------~~~~~~~~~~~~~~~~~~l~s~~~  252 (312)
                      ..|++++|||.|  ++.+..||++++|++.++..   .+++         ++...+... .|..+..++++...
T Consensus       163 ~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI-~wl~~~~flv~y~~  233 (388)
T 1xip_A          163 QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSV-TILSPQDFLAVFGN  233 (388)
T ss_dssp             ESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEE-EESSSSEEEEEEEC
T ss_pred             CCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEE-EEecCCeEEEEEcC
Confidence            689999999999  67888999999999887662   2331         133344333 35567777776443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.48  E-value=3.6e-12  Score=103.89  Aligned_cols=194  Identities=11%  Similarity=0.028  Sum_probs=130.3

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-C
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d  108 (312)
                      .....+++|+|++..+++++..++.|..|+..++ ..          .+      ..+...+.+++++++|+++++.. +
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~----------~~------~~~~~~~~~l~~~~dg~l~v~~~~~   89 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS----------PE------MHPSHHQNGHCLNKQGHLIACSHGL   89 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE----------EE------ESSCSSEEEEEECTTCCEEEEETTT
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE----------EE------ECCCCCcceeeECCCCcEEEEecCC
Confidence            3457899999998448888899999999998865 21          11      23456788999999999888764 7


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC--CceeeEEEEecCCCCEEEE----ec-------------cC
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN--SQTVKGVNFFGPNDEYVMS----GS-------------DC  169 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~~~s~~~~~l~~----~~-------------~d  169 (312)
                      +.|.+||..++                +..........  ...+..+++ +++|+++++    |+             ..
T Consensus        90 ~~i~~~d~~~g----------------~~~~~~~~~~~~~~~~~~~i~~-d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~  152 (296)
T 3e5z_A           90 RRLERQREPGG----------------EWESIADSFEGKKLNSPNDVCL-APDGSLWFSDPTYGIDKPEEGYGGEMELPG  152 (296)
T ss_dssp             TEEEEECSTTC----------------CEEEEECEETTEECCCCCCEEE-CTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred             CeEEEEcCCCC----------------cEEEEeeccCCCCCCCCCCEEE-CCCCCEEEECCccccccccccccccccCCC
Confidence            89999998765                22222111111  112678998 899998887    33             13


Q ss_pred             ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC-CCCC----CCCCCChhhhhhhhccCCCC
Q 021484          170 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PTDF----PPLPDNAEKIMKANKQGRED  244 (312)
Q Consensus       170 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~-~~~~----~~~~~~~~~~~~~~~~~~~~  244 (312)
                      +.|..++.. ++. ..+..+...+..++|+|+++.+++.+.++.|.+|++. .+.+    ..+ ...........+.+++
T Consensus       153 ~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G  229 (296)
T 3e5z_A          153 RWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGG  229 (296)
T ss_dssp             CEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTS
T ss_pred             cEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCC
Confidence            467777765 443 4445566677899999999998777788999999986 3332    111 1111111223455677


Q ss_pred             ceeEEecCCceEEEEEec
Q 021484          245 HSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       245 ~~l~s~~~d~~i~i~~~~  262 (312)
                      .++++.  ++.|.+|+..
T Consensus       230 ~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          230 LIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             CEEEEE--TTEEEEECTT
T ss_pred             CEEEEc--CCeEEEECCC
Confidence            777766  7888899864

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.45  E-value=2.7e-12  Score=107.75  Aligned_cols=66  Identities=9%  Similarity=0.072  Sum_probs=56.9

Q ss_pred             EEEecCCCCEEEEecc-----------CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          153 VNFFGPNDEYVMSGSD-----------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       153 v~~~s~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                      ++| +++++.++++..           .+.|.+||+.+++.+..+..+.  +..++|+|+|++|++++. ++|.+||..+
T Consensus       259 ~a~-~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t  334 (361)
T 2oiz_A          259 VGL-HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQ  334 (361)
T ss_dssp             EEE-ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred             EEE-ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence            677 788888776543           3589999999999999998776  899999999999888886 9999999998


Q ss_pred             C
Q 021484          222 T  222 (312)
Q Consensus       222 ~  222 (312)
                      +
T Consensus       335 ~  335 (361)
T 2oiz_A          335 P  335 (361)
T ss_dssp             S
T ss_pred             C
Confidence            7

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.45  E-value=5.3e-11  Score=98.55  Aligned_cols=160  Identities=8%  Similarity=0.035  Sum_probs=107.8

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCC----CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSD----EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  104 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  104 (312)
                      +...+.+++++|++ +++++...+    +.|.+||..++....          +..   ...+...+..++++|+|++++
T Consensus        85 ~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~----------~~~---~~~~~~~~~~i~~d~~g~l~v  150 (333)
T 2dg1_A           85 HKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQD----------IIE---DLSTAYCIDDMVFDSKGGFYF  150 (333)
T ss_dssp             SSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEE----------EEC---SSSSCCCEEEEEECTTSCEEE
T ss_pred             CCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEE----------EEc---cCccCCcccceEECCCCCEEE
Confidence            34579999999998 677777666    689999988765210          000   012345688999999999877


Q ss_pred             EecC-------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE-EeccCceEEEEe
Q 021484          105 SYND-------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWK  176 (312)
Q Consensus       105 s~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~-~~~~dg~v~iwd  176 (312)
                      +...       +.|+.++..++                 ....+......  +..++| ++++++|+ +.+.++.|.+|+
T Consensus       151 ~~~~~~~~~~~~~l~~~~~~~~-----------------~~~~~~~~~~~--~~~i~~-~~dg~~l~v~~~~~~~i~~~d  210 (333)
T 2dg1_A          151 TDFRGYSTNPLGGVYYVSPDFR-----------------TVTPIIQNISV--ANGIAL-STDEKVLWVTETTANRLHRIA  210 (333)
T ss_dssp             EECCCBTTBCCEEEEEECTTSC-----------------CEEEEEEEESS--EEEEEE-CTTSSEEEEEEGGGTEEEEEE
T ss_pred             EeccccccCCCceEEEEeCCCC-----------------EEEEeecCCCc--ccceEE-CCCCCEEEEEeCCCCeEEEEE
Confidence            7542       45666665443                 22223222222  788998 99998654 556688999999


Q ss_pred             ccC-CeeEEE--------eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          177 KKG-GKLVRL--------MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       177 ~~~-~~~~~~--------~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      +.+ ++.+..        +.++ ..+..++++++|+++++...++.|.+||.....
T Consensus       211 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~  265 (333)
T 2dg1_A          211 LEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYP  265 (333)
T ss_dssp             ECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCE
T ss_pred             ecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCE
Confidence            863 332221        1122 367889999999988888788999999986443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.43  E-value=5.7e-12  Score=101.56  Aligned_cols=183  Identities=8%  Similarity=0.004  Sum_probs=131.6

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCC-ccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN-IHITGLAYSNTSELLISYNDELVYLFEKNMGLGP  122 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~  122 (312)
                      ++|++++.++.|++||..+++.+..              + ..+. ..+.++++.|+|++++ +.++.|+.||. ++   
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~--------------~-~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G---   65 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWE--------------Y-PLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DG---   65 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEE--------------E-ECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TS---
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEE--------------e-CCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CC---
Confidence            7999999999999999988984322              1 2222 3577889999999888 45778999998 56   


Q ss_pred             CCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEeccCCeeEEEeec------CccceEE
Q 021484          123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVG------DRHVVNQ  195 (312)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~------~~~~v~~  195 (312)
                                   +.+..+..... ..+.++.+ .++|+++++.+. ++.|..+|. +++.+..+..      +......
T Consensus        66 -------------~~~W~~~~~~~-~~~~~~~~-~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~  129 (276)
T 3no2_A           66 -------------RELWNIAAPAG-CEMQTARI-LPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQ  129 (276)
T ss_dssp             -------------CEEEEEECCTT-CEEEEEEE-CTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSC
T ss_pred             -------------CEEEEEcCCCC-ccccccEE-CCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccC
Confidence                         67777775422 23788888 899999999877 888988886 6877766642      1124556


Q ss_pred             EEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          196 LEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       196 ~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      +++.++|+++++...++.|..||.....+-.+... .... .....+++..+++...++.+..+|..+.
T Consensus       130 v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~-~~~~-~~~~~~~g~~~v~~~~~~~v~~~d~~tG  196 (276)
T 3no2_A          130 INKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLS-GTPF-SSAFLDNGDCLVACGDAHCFVQLNLESN  196 (276)
T ss_dssp             CEECTTSCEEEEETTTTEEEEECTTSCEEEEEECS-SCCC-EEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred             ceECCCCCEEEEecCCCEEEEECCCCCEEEEEECC-CCcc-ceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence            77899999999999999999999984333222211 1111 1223456788888888888888876544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.40  E-value=2.6e-11  Score=110.90  Aligned_cols=221  Identities=5%  Similarity=-0.026  Sum_probs=135.2

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCe----------------EEEEEccCCe
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEY----------------ARVYDIRKCH   64 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~----------------i~iwd~~~~~   64 (312)
                      |++||+.+.+.......            ...+..++|+|++ +.|+.++.++.                |++|++.+++
T Consensus       153 i~v~d~~tg~~~~~~~~------------~~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~  219 (710)
T 2xdw_A          153 IKFMKVDGAKELPDVLE------------RVKFSCMAWTHDG-KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ  219 (710)
T ss_dssp             EEEEETTTTEEEEEEEE------------EECSCCEEECTTS-SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG
T ss_pred             EEEEECCCCCCCccccc------------CcccceEEEEeCC-CEEEEEEECCccccccccccccCCCCEEEEEECCCCc
Confidence            46788877654332211            1225689999999 67777776655                9999998765


Q ss_pred             ecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c-----CCcEEEEEcCC------CcCCCCCcCCcccc
Q 021484           65 WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-----DELVYLFEKNM------GLGPSPLSLSPEDL  132 (312)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~-----d~~i~iwd~~~------~~~~~~~~~~~~~~  132 (312)
                      ..       ..   .... ...|...+..+.|+|+|++|+.. .     +..|++||+.+      +.            
T Consensus       220 ~~-------~~---~v~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~------------  276 (710)
T 2xdw_A          220 SE-------DI---LCAE-FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI------------  276 (710)
T ss_dssp             GG-------CE---EEEC-CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS------------
T ss_pred             cc-------ce---EEec-cCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc------------
Confidence            10       00   0000 02245567899999999977663 3     46899999975      30            


Q ss_pred             cCCCCCceEecccCCceeeEEEEecCCCCEEEEecc----CceEEEEeccCCee--EEEeecCcc--ceEEEEEcCCCCe
Q 021484          133 QKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWKKKGGKL--VRLMVGDRH--VVNQLEPHPHIPM  204 (312)
Q Consensus       133 ~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~----dg~v~iwd~~~~~~--~~~~~~~~~--~v~~~~~~p~~~~  204 (312)
                         .....+..+...  +.. .| +++|+.|+..+.    .+.|.+||+.+++.  ...+..|..  .+..++|++++.+
T Consensus       277 ---~~~~~l~~~~~~--~~~-~~-s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  349 (710)
T 2xdw_A          277 ---LKWVKLIDNFEG--EYD-YV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL  349 (710)
T ss_dssp             ---CCCEEEECSSSS--CEE-EE-EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred             ---cceEEeeCCCCc--EEE-EE-eccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEE
Confidence               134555555543  443 35 678887765554    33699999987642  344444543  6888999988788


Q ss_pred             EEEEeCCCc--EEEccCCCCC-CCCCCCChhhhhhhhccCCCCc-eeEEec---CCceEEEEEecccC
Q 021484          205 FATCGIEKT--VKLWAPMPTD-FPPLPDNAEKIMKANKQGREDH-SRITLT---PDVIMHVLRLQRRQ  265 (312)
Q Consensus       205 l~t~~~d~~--i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~s~~---~d~~i~i~~~~~~~  265 (312)
                      +++...|+.  |.+|++.++. ...+..+...+ ....+++++. ++++.+   ..+.+..||+.++.
T Consensus       350 v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v-~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          350 VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSV-VGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECCCSSEE-EEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEECCEEEEEEEECCCCCEEEecCCCCceE-EEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            888888885  5667775554 33333332222 2222444544 333333   34788889886654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.39  E-value=8.1e-12  Score=104.03  Aligned_cols=180  Identities=9%  Similarity=0.106  Sum_probs=111.1

Q ss_pred             eEEEEEcCCCCcEEEEEeC---------------------------CCeEEEEEccCCeecCCCCCCCCccccccccccc
Q 021484           33 LNAIVIDPRNPNYFAVGGS---------------------------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG   85 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      +..++|+|++ +.|+.++.                           ...|++||+.+++..              ..+ .
T Consensus       106 ~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~--------------~~l-~  169 (347)
T 2gop_A          106 IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI--------------EEF-E  169 (347)
T ss_dssp             EEEEEECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE--------------EEE-E
T ss_pred             ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE--------------eee-c
Confidence            8899999999 66666653                           257889999877621              111 1


Q ss_pred             CCCccEEEEEEccCCCeEEEec-C------C-cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec
Q 021484           86 KNNIHITGLAYSNTSELLISYN-D------E-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  157 (312)
Q Consensus        86 ~~~~~i~~~~~~~~~~~l~s~~-d------~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s  157 (312)
                      . . .+..++|+|+| +++++. +      . ...+|.+.++                 ....+..+ ..  +..  + +
T Consensus       170 ~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-----------------~~~~l~~~-~~--~~~--~-s  223 (347)
T 2gop_A          170 K-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-----------------KEEKMFEK-VS--FYA--V-D  223 (347)
T ss_dssp             E-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-----------------EEEEEEEE-ES--EEE--E-E
T ss_pred             C-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-----------------ceEEeccC-cc--eee--E-C
Confidence            1 2 56788999999 777653 3      2 3344444333                 23333333 22  433  4 7


Q ss_pred             CCCCEEEEeccC--------ceEEEEeccCCeeEEEeecCccceEE-EEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCC
Q 021484          158 PNDEYVMSGSDC--------GHLFIWKKKGGKLVRLMVGDRHVVNQ-LEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP  228 (312)
Q Consensus       158 ~~~~~l~~~~~d--------g~v~iwd~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~  228 (312)
                      |+|++|+.++.+        ..|++||  +++.......+...+.. +.|+ ++ ++++++.++.++|| +.++....+.
T Consensus       224 pdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~  298 (347)
T 2gop_A          224 SDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA  298 (347)
T ss_dssp             ECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE
T ss_pred             CCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe
Confidence            899988776643        4788888  56655444556677886 8999 88 88889999999999 8744432222


Q ss_pred             CChhhhhhhhccCCCCceeEEecCCceE-EEEEec
Q 021484          229 DNAEKIMKANKQGREDHSRITLTPDVIM-HVLRLQ  262 (312)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i-~i~~~~  262 (312)
                      .+...+ ....+++  .++++.+.++.. ++|.+.
T Consensus       299 ~~~~~v-~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          299 KGRHWI-MGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             CSSSEE-EEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             cCCCeE-EeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            222222 2222344  455665555443 677654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.38  E-value=6.7e-11  Score=95.32  Aligned_cols=176  Identities=6%  Similarity=0.005  Sum_probs=122.5

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||..+.+..-.+...          ....+.++.++|++ ++++  +.++.|+.||. +++.+..            
T Consensus        17 v~~~d~~tG~~~w~~~~~----------~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~------------   70 (276)
T 3no2_A           17 IAIINKDTKEIVWEYPLE----------KGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWN------------   70 (276)
T ss_dssp             EEEEETTTTEEEEEEECC----------TTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEE------------
T ss_pred             EEEEECCCCeEEEEeCCC----------ccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEE------------
Confidence            457777666533222221          11357899999998 7777  45788999998 6763322            


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC----CceeeEEE
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN----SQTVKGVN  154 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~v~  154 (312)
                        +.......+.++.+.++|+++++. . ++.|..+|.. +                +.+..+.....    ......++
T Consensus        71 --~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-G----------------k~l~~~~~~~~~~~~~~~~~~v~  131 (276)
T 3no2_A           71 --IAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-G----------------EVLSKTEFETGIERPHAQFRQIN  131 (276)
T ss_dssp             --EECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-S----------------CEEEEEEECCSCSSGGGSCSCCE
T ss_pred             --EcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-C----------------CEEEEEeccCCCCcccccccCce
Confidence              101123457889999999988885 4 6677777753 3                34444431110    01245566


Q ss_pred             EecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          155 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       155 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      . .++++++++...++.|..||.. |+.+.++..+ ..+.++...++++++++++.++.|..+|..++++
T Consensus       132 ~-~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          132 K-NKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             E-CTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             E-CCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence            6 8899999999999999999998 9998888754 3456788899999999988888999999997663

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.37  E-value=3e-10  Score=92.27  Aligned_cols=195  Identities=10%  Similarity=0.082  Sum_probs=132.0

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-  107 (312)
                      +...+.++++++++ +++++...++.|..||.. ++..             .. ....+...+..+++.++|.++++.. 
T Consensus        13 ~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~-~~~~-------------~~-~~~~~~~~~~~i~~~~~g~l~v~~~~   76 (299)
T 2z2n_A           13 QDTGPYGITVSDKG-KVWITQHKANMISCINLD-GKIT-------------EY-PLPTPDAKVMCLTISSDGEVWFTENA   76 (299)
T ss_dssp             SSCCEEEEEECTTS-CEEEEETTTTEEEEECTT-CCEE-------------EE-ECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred             cCCCccceEECCCC-CEEEEecCCCcEEEEcCC-CCeE-------------Ee-cCCcccCceeeEEECCCCCEEEeCCC
Confidence            34578999999998 677776668999999987 5421             00 0012346788999999999888764 


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE-e
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-M  186 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~  186 (312)
                      ++.|..|+....                  ...+........+..+++ +++++++++...++.|..||. +++.... .
T Consensus        77 ~~~i~~~~~~g~------------------~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~  136 (299)
T 2z2n_A           77 ANKIGRITKKGI------------------IKEYTLPNPDSAPYGITE-GPNGDIWFTEMNGNRIGRITD-DGKIREYEL  136 (299)
T ss_dssp             TTEEEEECTTSC------------------EEEEECSSTTCCEEEEEE-CTTSCEEEEETTTTEEEEECT-TCCEEEEEC
T ss_pred             CCeEEEECCCCc------------------EEEEeCCCcCCCceeeEE-CCCCCEEEEecCCceEEEECC-CCCEEEecC
Confidence            888999987521                  122221111123888998 889988888878899999998 5554332 2


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC--CCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL--PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      ..+...+..++++|++.++++...++.|..|+. +++...+  ......+ ......+++.+.++...++.+..|+.
T Consensus       137 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~-~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          137 PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGP-VGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE-EEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcc-eeEEECCCCCEEEEccCCceEEEECC
Confidence            234457899999999988887777789999998 5543221  1111111 22234556677777777788888876

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.37  E-value=1.7e-11  Score=112.54  Aligned_cols=197  Identities=12%  Similarity=0.124  Sum_probs=122.3

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCC-----CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSD-----EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL  103 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  103 (312)
                      |...+..++|||+| ++|+.++.+     ..|++||+.+++..              ..  ..+...+..++|+|+ +.|
T Consensus       161 ~~~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~tg~~~--------------~~--~~~~~~~~~~~wspD-~~l  222 (741)
T 1yr2_A          161 GATALDAWAASDDG-RLLAYSVQDGGSDWRTVKFVGVADGKPL--------------AD--ELKWVKFSGLAWLGN-DAL  222 (741)
T ss_dssp             --EEEEEEEECTTS-SEEEEEEEETTCSEEEEEEEETTTCCEE--------------EE--EEEEEESCCCEESTT-SEE
T ss_pred             CCEEEEeEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCC--------------Cc--cCCCceeccEEEECC-CEE
Confidence            34468899999999 666665433     35999999988732              10  001111247899999 866


Q ss_pred             EEe-cCC--------------cEEEEEcCCCcCCCCCcCCcccccCCCC--CceEecccCCceeeEEEEecCCCCEEEEe
Q 021484          104 ISY-NDE--------------LVYLFEKNMGLGPSPLSLSPEDLQKREE--PQVYSGHRNSQTVKGVNFFGPNDEYVMSG  166 (312)
Q Consensus       104 ~s~-~d~--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~~~s~~~~~l~~~  166 (312)
                      +.+ .++              .|++|++.++                ..  ...+........+..+.| +|+|++|+..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~----------------~~~~~lv~~~~~~~~~~~~~~~-SpDG~~l~~~  285 (741)
T 1yr2_A          223 LYSRFAEPKEGQAFQALNYNQTVWLHRLGTP----------------QSADQPVFATPELPKRGHGASV-SSDGRWVVIT  285 (741)
T ss_dssp             EEEECCCC--------CCCCCEEEEEETTSC----------------GGGCEEEECCTTCTTCEEEEEE-CTTSCEEEEE
T ss_pred             EEEEecCcccccccccCCCCCEEEEEECCCC----------------chhCEEEeccCCCCeEEEEEEE-CCCCCEEEEE
Confidence            664 343              3889998765                21  122332222123788998 9999998877


Q ss_pred             ccCc-----eEEEEeccCC--eeEEEeecCccceEEEEEcCCCCeEEEEeCC----CcEEEccCCCC--CCCCCCCChhh
Q 021484          167 SDCG-----HLFIWKKKGG--KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE----KTVKLWAPMPT--DFPPLPDNAEK  233 (312)
Q Consensus       167 ~~dg-----~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d----~~i~iwd~~~~--~~~~~~~~~~~  233 (312)
                      +.++     .|++||+.++  ++...+..+...+.... +|+++.|+..+.+    +.|.+|++.+.  ....+..+...
T Consensus       286 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~  364 (741)
T 1yr2_A          286 SSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD  364 (741)
T ss_dssp             EECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS
T ss_pred             EEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC
Confidence            7544     8999999877  31455555555555553 4889887777653    45999998774  22222222222


Q ss_pred             hhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          234 IMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       234 ~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      .+....+. ++.++++...++..++|.+.
T Consensus       365 ~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          365 NLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            22222222 55677888888888888665

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.37  E-value=1.5e-11  Score=102.85  Aligned_cols=134  Identities=7%  Similarity=-0.021  Sum_probs=99.5

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecC
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND  108 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d  108 (312)
                      ++. |+.++|  ++ +.|+++ .++.|++||+.+...              ... ...|...+.++.+.+.. +++...|
T Consensus        87 lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl~~--------------~~~-~~~~~~~v~~i~~~~p~-~av~~~d  145 (388)
T 1xip_A           87 IPD-VIFVCF--HG-DQVLVS-TRNALYSLDLEELSE--------------FRT-VTSFEKPVFQLKNVNNT-LVILNSV  145 (388)
T ss_dssp             CTT-EEEEEE--ET-TEEEEE-ESSEEEEEESSSTTC--------------EEE-EEECSSCEEEEEECSSE-EEEEETT
T ss_pred             CCC-eeEEEE--CC-CEEEEE-cCCcEEEEEchhhhc--------------cCc-cceeecceeeEEecCCC-EEEEECC
Confidence            456 999999  66 788888 889999999986541              111 13445667787776653 4444579


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee--EEEe
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--VRLM  186 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~  186 (312)
                      |.|.+||+.++                ... .   +...  |++++| +|+|  ++.|..||++++|+...++.  ..++
T Consensus       146 G~L~v~dl~~~----------------~~~-~---~~~~--Vs~v~W-SpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I  200 (388)
T 1xip_A          146 NDLSALDLRTK----------------STK-Q---LAQN--VTSFDV-TNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEF  200 (388)
T ss_dssp             SEEEEEETTTC----------------CEE-E---EEES--EEEEEE-CSSE--EEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             CCEEEEEccCC----------------ccc-c---ccCC--ceEEEE-cCCc--eEEEEcCCcEEEEcCCCcccccccee
Confidence            99999999865                332 1   2333  999999 9999  67888999999999987775  5556


Q ss_pred             ------e---cCccceEEEEEcCCCCeEEEE
Q 021484          187 ------V---GDRHVVNQLEPHPHIPMFATC  208 (312)
Q Consensus       187 ------~---~~~~~v~~~~~~p~~~~l~t~  208 (312)
                            .   +|...|.++.|.+++.++++=
T Consensus       201 ~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          201 SLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             CCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence                  2   367889999999998887663

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.35  E-value=8.8e-10  Score=97.47  Aligned_cols=213  Identities=9%  Similarity=0.040  Sum_probs=136.9

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEcc--CCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR--KCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~   78 (312)
                      |.++|..+.+....+..            ...+..+.|+|++ +++++++.|+.|.+||+.  +.+.+            
T Consensus       179 V~viD~~t~~v~~~i~~------------g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v------------  233 (567)
T 1qks_A          179 IALIDGSTYEIKTVLDT------------GYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTV------------  233 (567)
T ss_dssp             EEEEETTTCCEEEEEEC------------SSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEE------------
T ss_pred             EEEEECCCCeEEEEEeC------------CCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEe------------
Confidence            34677766554333322            2246689999999 788888899999999995  55421            


Q ss_pred             cccccccCCCccEEEEEEc----cCCCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc--------
Q 021484           79 CPRHLIGKNNIHITGLAYS----NTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--------  144 (312)
Q Consensus        79 ~~~~~~~~~~~~i~~~~~~----~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  144 (312)
                        ..+ .. ......++|+    |+|++++++  .++.|.++|..+.                +.++.+...        
T Consensus       234 --~~i-~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~----------------~~~~~i~~~~~~~~~~~  293 (567)
T 1qks_A          234 --AEI-KI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL----------------EPKKIQSTRGMTYDEQE  293 (567)
T ss_dssp             --EEE-EC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC----------------CEEEEEECCEECTTTCC
T ss_pred             --EEE-ec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC----------------cEEEEEecccccccccc
Confidence              122 11 2345789999    699977664  3899999998776                555554421        


Q ss_pred             --cCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCeeE--EEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEcc
Q 021484          145 --RNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWA  218 (312)
Q Consensus       145 --~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd  218 (312)
                        .. ..+..+.. ++++ .+++.....|.|.++|..+.+.+  ..+. ......++.|+|++++++++. .++.|.++|
T Consensus       294 ~~p~-~rva~i~~-s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD  370 (567)
T 1qks_A          294 YHPE-PRVAAILA-SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVID  370 (567)
T ss_dssp             EESC-CCEEEEEE-CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             ccCC-CceEEEEE-cCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEE
Confidence              11 12667776 6654 45566677899999998765432  2222 234567889999999966655 678999999


Q ss_pred             CCCCCCCC-CC-----CChhhhhhhhccCCC-CceeEEec-CCceEEEEEecc
Q 021484          219 PMPTDFPP-LP-----DNAEKIMKANKQGRE-DHSRITLT-PDVIMHVLRLQR  263 (312)
Q Consensus       219 ~~~~~~~~-~~-----~~~~~~~~~~~~~~~-~~~l~s~~-~d~~i~i~~~~~  263 (312)
                      +.++++.. +.     .|...  ..++..++ +...++.. .++.|.+++...
T Consensus       371 ~~t~kl~~~i~vgg~~Phpg~--g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          371 TKEGKLVAIEDTGGQTPHPGR--GANFVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             TTTTEEEEEEECSSSSBCCTT--CEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCCCcEEEEEeccCcCCCCcc--ceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            99876421 11     12111  11234554 33444443 468899998765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.33  E-value=5.3e-11  Score=108.60  Aligned_cols=198  Identities=7%  Similarity=-0.081  Sum_probs=120.3

Q ss_pred             EEEEEcCCCCcEEEEEeCCCe-------------EEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC
Q 021484           34 NAIVIDPRNPNYFAVGGSDEY-------------ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS  100 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~~~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  100 (312)
                      ..++|+|++ +.|+.++.|..             |++|++.+++..       ..   .... ...+...+..+.|+|+|
T Consensus       171 ~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~-------~~---lv~~-~~~~~~~~~~~~~SpDG  238 (695)
T 2bkl_A          171 ATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK-------DT---VVHE-RTGDPTTFLQSDLSRDG  238 (695)
T ss_dssp             CCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG-------CE---EEEC-CCCCTTCEEEEEECTTS
T ss_pred             cceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh-------ce---EEEe-cCCCCEEEEEEEECCCC
Confidence            679999999 67887777665             999999877510       00   0000 12345678899999999


Q ss_pred             CeEEEe-cCC----cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec---cCceE
Q 021484          101 ELLISY-NDE----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHL  172 (312)
Q Consensus       101 ~~l~s~-~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~---~dg~v  172 (312)
                      ++|+.. .++    .|++++..++                 ..+.+..+...  +....+ + ++.+++...   .++.|
T Consensus       239 ~~l~~~~~~~~~~~~l~~~~~~~~-----------------~~~~l~~~~~~--~~~~~~-~-~g~l~~~s~~~~~~~~l  297 (695)
T 2bkl_A          239 KYLFVYILRGWSENDVYWKRPGEK-----------------DFRLLVKGVGA--KYEVHA-W-KDRFYVLTDEGAPRQRV  297 (695)
T ss_dssp             CCEEEEEEETTTEEEEEEECTTCS-----------------SCEEEEECSSC--CEEEEE-E-TTEEEEEECTTCTTCEE
T ss_pred             CEEEEEEeCCCCceEEEEEcCCCC-----------------ceEEeecCCCc--eEEEEe-c-CCcEEEEECCCCCCCEE
Confidence            977664 444    5666655443                 34445555443  555555 4 455545444   35899


Q ss_pred             EEEeccCCee---EEEeecC-ccceEEEEEcCCCCeEEEEeCCCcEEEccCC--CCCCCCCCCChhhhhhhhccCCCCce
Q 021484          173 FIWKKKGGKL---VRLMVGD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPM--PTDFPPLPDNAEKIMKANKQGREDHS  246 (312)
Q Consensus       173 ~iwd~~~~~~---~~~~~~~-~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
                      .+||+.+++.   ...+..+ ...+..++|+ ++.++++...|+..+||.+.  ++....+..+....+....+++++..
T Consensus       298 ~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~  376 (695)
T 2bkl_A          298 FEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDD  376 (695)
T ss_dssp             EEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSE
T ss_pred             EEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCE
Confidence            9999987653   3333333 4467888888 66778888899988887654  33233332221222222334455544


Q ss_pred             eE-E---ecCCceEEEEEecccC
Q 021484          247 RI-T---LTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       247 l~-s---~~~d~~i~i~~~~~~~  265 (312)
                      ++ +   ....+.+++|++.++.
T Consensus       377 l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          377 AYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEEEcCCCCCCEEEEEECCCCc
Confidence            44 3   3344788999876653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.33  E-value=1.9e-10  Score=98.05  Aligned_cols=196  Identities=11%  Similarity=0.021  Sum_probs=124.9

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE  109 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~  109 (312)
                      .....++|+|++ +++++...++.|+.||..++++..               +... ..... ++|+++++.|+.+ .++
T Consensus       131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~~---------------~~~~-~~~~~-ia~~~~g~~l~~~d~~~  192 (409)
T 3hrp_A          131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVTT---------------VHPG-FKGGK-PAVTKDKQRVYSIGWEG  192 (409)
T ss_dssp             CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEEE---------------EEET-CCBCB-CEECTTSSEEEEEBSST
T ss_pred             CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEEE---------------eecc-CCCCc-eeEecCCCcEEEEecCC
Confidence            367899999998 788887788999999998776321               1111 12233 8999999877665 344


Q ss_pred             --cEEEEEcCCCcCCCCCcCCcccccCCCCCceE---ec-ccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484          110 --LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY---SG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       110 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                        .|++++...+                .....+   .. ..  ..+.++++ +|++..|+.+..++.|+.||..++...
T Consensus       193 ~~~I~~~d~~~~----------------~~~~~~g~~~~~~~--~~p~~iav-~p~~g~lyv~d~~~~I~~~d~~~~~~~  253 (409)
T 3hrp_A          193 THTVYVYMKASG----------------WAPTRIGQLGSTFS--GKIGAVAL-DETEEWLYFVDSNKNFGRFNVKTQEVT  253 (409)
T ss_dssp             TCEEEEEEGGGT----------------TCEEEEEECCTTSC--SCCCBCEE-CTTSSEEEEECTTCEEEEEETTTCCEE
T ss_pred             CceEEEEEcCCC----------------ceeEEeeeccchhc--CCcEEEEE-eCCCCeEEEEECCCcEEEEECCCCCEE
Confidence              7889988765                222222   01 22  23788998 885555555777899999999877543


Q ss_pred             EE----eecCccce-E-EEEEcCC-CCeEEEEeCCCcEEEccCCCCCCCCCCCC------hh--------hhhhhhccCC
Q 021484          184 RL----MVGDRHVV-N-QLEPHPH-IPMFATCGIEKTVKLWAPMPTDFPPLPDN------AE--------KIMKANKQGR  242 (312)
Q Consensus       184 ~~----~~~~~~~v-~-~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~------~~--------~~~~~~~~~~  242 (312)
                      ..    ..++...- . .++|+|+ +.++++-..++.|+.|+..... ..+.++      ..        ....-..+.+
T Consensus       254 ~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~  332 (409)
T 3hrp_A          254 LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDE  332 (409)
T ss_dssp             EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECT
T ss_pred             EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeC
Confidence            22    22222222 3 8999995 5556666678899999977531 111110      00        0012223556


Q ss_pred             CCceeEEec-CCceEEEEEeccc
Q 021484          243 EDHSRITLT-PDVIMHVLRLQRR  264 (312)
Q Consensus       243 ~~~~l~s~~-~d~~i~i~~~~~~  264 (312)
                      ++.++++-. .+..|+.|++...
T Consensus       333 dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          333 DGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             TCCEEEEETTTTCEEEEEETTTT
T ss_pred             CCCEEEEeCCCCCEEEEEECCCC
Confidence            777888888 8899999986544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.31  E-value=6.9e-10  Score=90.89  Aligned_cols=199  Identities=11%  Similarity=0.044  Sum_probs=124.4

Q ss_pred             CccceEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeecCC-CCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           29 NSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSP-ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        29 h~~~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      +...+.+++++++ + +++++.. .+.|.+||.. ++.... ..           .........+..++++++|+++++.
T Consensus        69 ~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-g~~~~~~~~-----------~~~~~~~~~~~~i~~d~~g~l~v~~  134 (314)
T 1pjx_A           69 YGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-GTFEEIAKK-----------DSEGRRMQGCNDCAFDYEGNLWITA  134 (314)
T ss_dssp             EECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-SCEEECCSB-----------CTTSCBCBCCCEEEECTTSCEEEEE
T ss_pred             CCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-CCEEEEEec-----------cCCCccccCCcCEEECCCCCEEEEe
Confidence            3456889999998 6 5555544 4478899988 653211 00           0001122457899999999977775


Q ss_pred             c-C---------------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec----CCCCEEE-E
Q 021484          107 N-D---------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG----PNDEYVM-S  165 (312)
Q Consensus       107 ~-d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s----~~~~~l~-~  165 (312)
                      . +               +.|..|+.. +                +.. .+..+...  ...+++ +    ++++.|+ +
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-g----------------~~~-~~~~~~~~--~~~i~~-~~~~d~dg~~l~v~  193 (314)
T 1pjx_A          135 PAGEVAPADYTRSMQEKFGSIYCFTTD-G----------------QMI-QVDTAFQF--PNGIAV-RHMNDGRPYQLIVA  193 (314)
T ss_dssp             CBCBCTTSCCCBTTSSSCEEEEEECTT-S----------------CEE-EEEEEESS--EEEEEE-EECTTSCEEEEEEE
T ss_pred             cCcccccccccccccCCCCeEEEECCC-C----------------CEE-EeccCCCC--cceEEE-ecccCCCCCEEEEE
Confidence            3 4               467777654 3                222 22222222  678888 8    8887654 4


Q ss_pred             eccCceEEEEecc-CCee-----EEEeecCc-cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhh
Q 021484          166 GSDCGHLFIWKKK-GGKL-----VRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKA  237 (312)
Q Consensus       166 ~~~dg~v~iwd~~-~~~~-----~~~~~~~~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~  237 (312)
                      ...++.|.+|++. +++.     ...+..+. ..+..++++++|+++++...++.|.+||..+++. ..+..+...+ ..
T Consensus       194 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~-~~  272 (314)
T 1pjx_A          194 ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKP-SN  272 (314)
T ss_dssp             ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCE-EE
T ss_pred             ECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCc-ee
Confidence            4668999999986 4542     23333343 5678899999999988888889999999985543 2222222222 22


Q ss_pred             hccCCCCc-eeEEecCCceEEEEEecc
Q 021484          238 NKQGREDH-SRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       238 ~~~~~~~~-~l~s~~~d~~i~i~~~~~  263 (312)
                      ..+.+++. +.++...++.|..|++..
T Consensus       273 i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          273 LHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            23456666 555666667788887654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.30  E-value=2.1e-09  Score=87.23  Aligned_cols=194  Identities=7%  Similarity=0.044  Sum_probs=131.1

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      ...+.++++++++ .++++...++.|..|+.. ++.          ..+.   . ......+..+++.++|.++++. .+
T Consensus        56 ~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~----------~~~~---~-~~~~~~~~~i~~~~~g~l~v~~~~~  119 (299)
T 2z2n_A           56 DAKVMCLTISSDG-EVWFTENAANKIGRITKK-GII----------KEYT---L-PNPDSAPYGITEGPNGDIWFTEMNG  119 (299)
T ss_dssp             TCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCE----------EEEE---C-SSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             cCceeeEEECCCC-CEEEeCCCCCeEEEECCC-CcE----------EEEe---C-CCcCCCceeeEECCCCCEEEEecCC
Confidence            4568899999988 677777778899999976 321          0000   1 1234568899999999988776 47


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE-ee
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MV  187 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~  187 (312)
                      +.|.+||. ++                +. ..+........+..+++ +++++++++...++.|..||. +++.... +.
T Consensus       120 ~~i~~~d~-~g----------------~~-~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~  179 (299)
T 2z2n_A          120 NRIGRITD-DG----------------KI-REYELPNKGSYPSFITL-GSDNALWFTENQNNAIGRITE-SGDITEFKIP  179 (299)
T ss_dssp             TEEEEECT-TC----------------CE-EEEECSSTTCCEEEEEE-CTTSCEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred             ceEEEECC-CC----------------CE-EEecCCCCCCCCceEEE-cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCC
Confidence            89999998 43                12 22221111123789998 899988888777899999999 6665432 23


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC--CCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL--PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       188 ~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .+...+..+++++++.++++...++.|.+|+. ++....+  ......+ ......+++.+.++...++.+..|+.
T Consensus       180 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~-~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          180 TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARP-HAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE-EEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCc-eeEEECCCCCEEEeccCCceEEEECC
Confidence            34456889999999998777767889999998 5543222  1111222 22334556777777767788888886

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.27  E-value=2.7e-10  Score=94.22  Aligned_cols=223  Identities=7%  Similarity=-0.028  Sum_probs=139.0

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE  109 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~  109 (312)
                      .....+++.. + +++++...++.|.+||..+++.+.              .+ . .......++++++++++++. .++
T Consensus        44 ~~~~~i~~~~-~-~lyv~~~~~~~v~viD~~t~~~~~--------------~i-~-~~~~p~~i~~~~~g~lyv~~~~~~  105 (328)
T 3dsm_A           44 DVAQSMVIRD-G-IGWIVVNNSHVIFAIDINTFKEVG--------------RI-T-GFTSPRYIHFLSDEKAYVTQIWDY  105 (328)
T ss_dssp             SCEEEEEEET-T-EEEEEEGGGTEEEEEETTTCCEEE--------------EE-E-CCSSEEEEEEEETTEEEEEEBSCS
T ss_pred             ccceEEEEEC-C-EEEEEEcCCCEEEEEECcccEEEE--------------Ec-C-CCCCCcEEEEeCCCeEEEEECCCC
Confidence            3467787754 3 677777778999999999887421              11 1 23567899999999766666 589


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC---CceeeEEEEecCCCCEEEEec-cCceEEEEeccCCeeEEE
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---SQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~  185 (312)
                      .|.+||..++                +....+.....   ......+++ . .+..+++.. .++.|.++|+.+++.+..
T Consensus       106 ~v~~iD~~t~----------------~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~  167 (328)
T 3dsm_A          106 RIFIINPKTY----------------EITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDE  167 (328)
T ss_dssp             EEEEEETTTT----------------EEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEE
T ss_pred             eEEEEECCCC----------------eEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEE
Confidence            9999999876                44444443220   002566776 2 344444443 488999999999998888


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCC----------CcEEEccCCCCCCC-CCCCChhhhhhhhccCCCCceeEEecCCc
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIE----------KTVKLWAPMPTDFP-PLPDNAEKIMKANKQGREDHSRITLTPDV  254 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d----------~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  254 (312)
                      +.... ....++++|+|++++++..+          +.|.++|..+.++. .+.-..........+++++..+.....  
T Consensus       168 i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--  244 (328)
T 3dsm_A          168 LTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--  244 (328)
T ss_dssp             EECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--
T ss_pred             EEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--
Confidence            76533 45689999999987776654          78999999887642 221111111223345666666665544  


Q ss_pred             eEEEEEecccCccc--eeEe-ecCCCccCCCCCCCeEEEee
Q 021484          255 IMHVLRLQRRQTLA--YRER-RYNAADFESDEEEGETYLLG  292 (312)
Q Consensus       255 ~i~i~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~v~~~~  292 (312)
                      .+.+||..+.....  +... ......+..+.+++.+|+.+
T Consensus       245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          245 DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence            78888876553211  1110 01122233334456677776

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.25  E-value=2.9e-09  Score=89.20  Aligned_cols=176  Identities=9%  Similarity=0.002  Sum_probs=115.3

Q ss_pred             CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-----------CCcEEEEEcCCC
Q 021484           51 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-----------DELVYLFEKNMG  119 (312)
Q Consensus        51 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-----------d~~i~iwd~~~~  119 (312)
                      .|+.|.+||..++++.              ..+ ..+..+  .++|+|+|+++++++           ++.|.+||+.+.
T Consensus        29 ~d~~v~v~D~~t~~~~--------------~~i-~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFL--------------GMV-PTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGCEEEEEETTTCCEE--------------EEE-ECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             ccCeEEEEECCCCeEE--------------EEe-cCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            4789999999888632              111 222333  899999999776642           567999999876


Q ss_pred             cCCCCCcCCcccccCCCCCceEeccc----CCceeeEEEEecCCCCEEEEecc--CceEEEEeccCCeeEEE-eecCccc
Q 021484          120 LGPSPLSLSPEDLQKREEPQVYSGHR----NSQTVKGVNFFGPNDEYVMSGSD--CGHLFIWKKKGGKLVRL-MVGDRHV  192 (312)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~v~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~-~~~~~~~  192 (312)
                                      +....+....    .......+++ +|+|++|++++.  ++.|.+||+.+++.+.. +...  .
T Consensus        92 ----------------~~~~~i~~~~~~~~~g~~p~~i~~-spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~  152 (361)
T 2oiz_A           92 ----------------TFEKEISLPPKRVQGLNYDGLFRQ-TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--G  152 (361)
T ss_dssp             ----------------CEEEEEEECTTBCCBCCCGGGEEE-CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--T
T ss_pred             ----------------cEEEEEEcCccccccCCCcceEEE-CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--C
Confidence                            5555554321    0122678888 999999998874  68999999999998887 6532  2


Q ss_pred             eEEEEEcCCC-CeEEEEeCCCcEEEccCCC-CCCC-------CCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          193 VNQLEPHPHI-PMFATCGIEKTVKLWAPMP-TDFP-------PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       193 v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      ...+.+.|++ ..+++.+.||.+.+|++.. ++..       .+......+  .....+++..++..+.++.+.++++..
T Consensus       153 ~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~v~v~d~~~  230 (361)
T 2oiz_A          153 CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI--FIAPALDKDKAHFVSYYGNVYSADFSG  230 (361)
T ss_dssp             EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB--CSCCEECSSEEEEEBTTSEEEEEECSS
T ss_pred             cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce--EEEecccCCEEEEEeCCCeEEEEEecC
Confidence            2335677876 5578888999999998754 3321       111111111  111233445556666788899999754


Q ss_pred             c
Q 021484          264 R  264 (312)
Q Consensus       264 ~  264 (312)
                      .
T Consensus       231 ~  231 (361)
T 2oiz_A          231 D  231 (361)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.23  E-value=5.4e-09  Score=84.79  Aligned_cols=194  Identities=9%  Similarity=0.038  Sum_probs=130.0

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-C
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d  108 (312)
                      ...+.++++++++ +++++...++.|..||.. ++..             . .........+..+++.+++.++++.. +
T Consensus        19 ~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~~~~-------------~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~   82 (300)
T 2qc5_A           19 DSGPYGITSSEDG-KVWFTQHKANKISSLDQS-GRIK-------------E-FEVPTPDAKVMCLIVSSLGDIWFTENGA   82 (300)
T ss_dssp             TCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEE-------------E-EECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CCCcceeeECCCC-CEEEEcCCCCeEEEECCC-CceE-------------E-EECCCCCCcceeEEECCCCCEEEEecCC
Confidence            3468899999998 677777778999999987 5421             0 00122335688999999999777764 7


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE-ee
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MV  187 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~  187 (312)
                      +.|..||.. +                +. ..+........+.++++ +++++++++...++.|..+|.. ++.... +.
T Consensus        83 ~~v~~~d~~-g----------------~~-~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~  142 (300)
T 2qc5_A           83 NKIGKLSKK-G----------------GF-TEYPLPQPDSGPYGITE-GLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP  142 (300)
T ss_dssp             TEEEEECTT-S----------------CE-EEEECSSTTCCEEEEEE-CSTTCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred             CeEEEECCC-C----------------Ce-EEecCCCCCCCCccceE-CCCCCEEEEccCCCeEEEECCC-CCEEEccCC
Confidence            889999976 4                22 22222111123889998 8899988887778899999987 654422 23


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC--CCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL--PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       188 ~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .....+..+++.++++++++...++.|..++. .++...+  ......+ ......+++.+.++....+.+.+++.
T Consensus       143 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~-~~i~~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          143 NKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAP-VGITSGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE-EEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             CCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCc-ceEEECCCCCEEEEccCCCEEEEEcC
Confidence            33457889999999997777766789999998 4432211  1111111 22224456667777766777888875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.22  E-value=1.1e-09  Score=89.71  Aligned_cols=200  Identities=10%  Similarity=0.140  Sum_probs=127.6

Q ss_pred             ceEEEEEcCCCCcEEEE-------EeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeE
Q 021484           32 RLNAIVIDPRNPNYFAV-------GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELL  103 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l  103 (312)
                      ...+++|++++ +++++       +..++.|..||..+++...          +..... .++...+..++++++ ++++
T Consensus        19 ~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~----------~~~~~~-~~~~~~~~~i~~~~~~g~l~   86 (314)
T 1pjx_A           19 GAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTV----------ICKPEV-NGYGGIPAGCQCDRDANQLF   86 (314)
T ss_dssp             TCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEE----------EECCEE-TTEECCEEEEEECSSSSEEE
T ss_pred             CccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEE----------EEeccc-CCCCCCCceEEEecCCCcEE
Confidence            46799999988 77777       6778999999987775311          100000 123456889999999 8877


Q ss_pred             EEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCce-Eecc--cCCceeeEEEEecCCCCEEEEeccC-----------
Q 021484          104 ISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGH--RNSQTVKGVNFFGPNDEYVMSGSDC-----------  169 (312)
Q Consensus       104 ~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~v~~v~~~s~~~~~l~~~~~d-----------  169 (312)
                      ++...+.|.+||.. +                +.... ....  .....+.++++ +++++++++...+           
T Consensus        87 v~~~~~~l~~~d~~-g----------------~~~~~~~~~~~~~~~~~~~~i~~-d~~g~l~v~~~~~~~~~~~~~~~~  148 (314)
T 1pjx_A           87 VADMRLGLLVVQTD-G----------------TFEEIAKKDSEGRRMQGCNDCAF-DYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             EEETTTEEEEEETT-S----------------CEEECCSBCTTSCBCBCCCEEEE-CTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             EEECCCCEEEEeCC-C----------------CEEEEEeccCCCccccCCcCEEE-CCCCCEEEEecCcccccccccccc
Confidence            77655589999987 4                22111 1100  11123788998 8999888777655           


Q ss_pred             ----ceEEEEeccCCeeEEEeecCccceEEEEEc----CCCCeEE-EEeCCCcEEEccCC-CCC------CCCCCCCh-h
Q 021484          170 ----GHLFIWKKKGGKLVRLMVGDRHVVNQLEPH----PHIPMFA-TCGIEKTVKLWAPM-PTD------FPPLPDNA-E  232 (312)
Q Consensus       170 ----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~----p~~~~l~-t~~~d~~i~iwd~~-~~~------~~~~~~~~-~  232 (312)
                          +.|..++.. ++..... .+......++|+    |+++.+. +...++.|.+|++. .+.      ...+..+. .
T Consensus       149 ~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T 1pjx_A          149 QEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             SSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             cCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC
Confidence                678888876 5543332 233456889999    9997654 44567899999976 332      11222111 1


Q ss_pred             hhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          233 KIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       233 ~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      .. ....+.+++.++++...++.|.+|+..+.
T Consensus       227 ~p-~~i~~d~~G~l~v~~~~~~~i~~~d~~~g  257 (314)
T 1pjx_A          227 GA-DGMDFDEDNNLLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             EE-EEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred             CC-CceEECCCCCEEEEEcCCCEEEEEcCCCC
Confidence            11 22335567778888777888999986633

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.19  E-value=4.5e-09  Score=85.56  Aligned_cols=226  Identities=9%  Similarity=0.032  Sum_probs=137.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV  111 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i  111 (312)
                      -.-+..|+|++..++++...++.|+.||..+++..               .  ......+.+++++++|+++++. ++.|
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---------------~--~~~~~~~~~i~~~~dG~l~v~~-~~~l   75 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---------------R--VTMDAPVSSVALRQSGGYVATI-GTKF   75 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---------------E--EECSSCEEEEEEBTTSSEEEEE-TTEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE---------------E--EeCCCceEEEEECCCCCEEEEE-CCeE
Confidence            35688999976578888888999999999876521               0  1124568899999999966654 6789


Q ss_pred             EEEEcCCCcCCCCCcCCcccccCCCCCceEecc---cCCceeeEEEEecCCCCEEEEecc-----------CceEEEEec
Q 021484          112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH---RNSQTVKGVNFFGPNDEYVMSGSD-----------CGHLFIWKK  177 (312)
Q Consensus       112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~s~~~~~l~~~~~-----------dg~v~iwd~  177 (312)
                      .+||..++                +. ..+...   .....+..+++ +++|+++++...           .+.|+.++.
T Consensus        76 ~~~d~~~g----------------~~-~~~~~~~~~~~~~~~~di~~-d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~  137 (297)
T 3g4e_A           76 CALNWKEQ----------------SA-VVLATVDNDKKNNRFNDGKV-DPAGRYFAGTMAEETAPAVLERHQGALYSLFP  137 (297)
T ss_dssp             EEEETTTT----------------EE-EEEEECCTTCSSEEEEEEEE-CTTSCEEEEEEECCSBTTBCCTTCEEEEEECT
T ss_pred             EEEECCCC----------------cE-EEEEecCCCCCCCCCCCEEE-CCCCCEEEecCCcccccccccCCCcEEEEEEC
Confidence            99998765                22 222211   11123788998 899997765422           235555554


Q ss_pred             cCCeeEEEeecCccceEEEEEcCCCCeE-EEEeCCCcEEEccC--CCCCCC------CCCCChhhhhhhhccCCCCceeE
Q 021484          178 KGGKLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAP--MPTDFP------PLPDNAEKIMKANKQGREDHSRI  248 (312)
Q Consensus       178 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~  248 (312)
                      . ++... +..+....+.++|+|+++.| ++.+.++.|.+|++  .++.+.      .+.... ....-....+++.+.+
T Consensus       138 ~-g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-~~p~g~~~d~~G~lwv  214 (297)
T 3g4e_A          138 D-HHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE-QIPDGMCIDAEGKLWV  214 (297)
T ss_dssp             T-SCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG-CEEEEEEEBTTSCEEE
T ss_pred             C-CCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC-CCCCeeEECCCCCEEE
Confidence            3 33332 33334456899999999876 45556789999986  344321      111111 1112223456777888


Q ss_pred             EecCCceEEEEEecccCccceeEee-cCCCccCCC-CCCCeEEEeecCCC
Q 021484          249 TLTPDVIMHVLRLQRRQTLAYRERR-YNAADFESD-EEEGETYLLGFSDS  296 (312)
Q Consensus       249 s~~~d~~i~i~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~v~~~~~~~~  296 (312)
                      +...++.|..|+..+......+... .....+... .+...+|+.....+
T Consensus       215 a~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~  264 (297)
T 3g4e_A          215 ACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDG  264 (297)
T ss_dssp             EEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCTT
T ss_pred             EEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCcC
Confidence            8777888888886644333332221 122333333 34456777765443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.18  E-value=1.9e-09  Score=91.80  Aligned_cols=157  Identities=11%  Similarity=0.034  Sum_probs=101.4

Q ss_pred             EEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEecCCcEE
Q 021484           36 IVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYNDELVY  112 (312)
Q Consensus        36 ~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~d~~i~  112 (312)
                      ++|+|++ +.|+++..++  .|.+++...+...         ..  ...........+.+++++| ++.++++..++.|+
T Consensus       176 ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~~---------~~--~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~  243 (409)
T 3hrp_A          176 PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWAP---------TR--IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFG  243 (409)
T ss_dssp             CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTCE---------EE--EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEE
T ss_pred             eeEecCC-CcEEEEecCCCceEEEEEcCCCcee---------EE--eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEE
Confidence            8999998 6777776655  7888887654310         00  0000011235567899999 55555544588999


Q ss_pred             EEEcCCCcCCCCCcCCcccccCCCCCceE-----ecccCCceeeEEEEecC-CCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          113 LFEKNMGLGPSPLSLSPEDLQKREEPQVY-----SGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .||..++                . ...+     .+.....+...++| +| ++.++++-...+.|+.|+....  +..+
T Consensus       244 ~~d~~~~----------------~-~~~~~~~~~~g~~~~~P~~~ia~-~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~  303 (409)
T 3hrp_A          244 RFNVKTQ----------------E-VTLIKQLELSGSLGTNPGPYLIY-YFVDSNFYMSDQNLSSVYKITPDGE--CEWF  303 (409)
T ss_dssp             EEETTTC----------------C-EEEEEECCCCSCCCCSSCCEEEE-ETTTTEEEEEETTTTEEEEECTTCC--EEEE
T ss_pred             EEECCCC----------------C-EEEEecccccCCCCCCccccEEE-eCCCCEEEEEeCCCCEEEEEecCCC--EEEE
Confidence            9998765                2 2222     11111111128999 78 4666677778899999997643  3333


Q ss_pred             ecCc---------------cceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCCC
Q 021484          187 VGDR---------------HVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDF  224 (312)
Q Consensus       187 ~~~~---------------~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~  224 (312)
                      .++.               .....++++|+|+++++-. .++.|+.|++..+.+
T Consensus       304 ~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          304 CGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             EECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             EeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            3332               3478999999999888877 889999999766654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.17  E-value=1.7e-08  Score=81.77  Aligned_cols=194  Identities=6%  Similarity=0.047  Sum_probs=128.2

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-C
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d  108 (312)
                      ...+.++++++++ +++++...++.|..||.. ++..              ..........+..+++.++|.++++.. +
T Consensus        61 ~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~~~--------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  124 (300)
T 2qc5_A           61 DAKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GGFT--------------EYPLPQPDSGPYGITEGLNGDIWFTQLNG  124 (300)
T ss_dssp             TCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEE--------------EEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred             CCcceeEEECCCC-CEEEEecCCCeEEEECCC-CCeE--------------EecCCCCCCCCccceECCCCCEEEEccCC
Confidence            3568899999988 677777668899999987 5421              001112235688999999999877764 7


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE-ee
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MV  187 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~  187 (312)
                      +.|..++.. +                +.. .+........+..+++ +++++++++...++.|..++. +++.... ..
T Consensus       125 ~~i~~~~~~-g----------------~~~-~~~~~~~~~~~~~i~~-d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~  184 (300)
T 2qc5_A          125 DRIGKLTAD-G----------------TIY-EYDLPNKGSYPAFITL-GSDNALWFTENQNNSIGRITN-TGKLEEYPLP  184 (300)
T ss_dssp             TEEEEECTT-S----------------CEE-EEECSSTTCCEEEEEE-CTTSSEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred             CeEEEECCC-C----------------CEE-EccCCCCCCCceeEEE-CCCCCEEEEecCCCeEEEECC-CCcEEEeeCC
Confidence            899999876 3                222 2221111123788998 899997777777889999998 5654432 22


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC--CCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       188 ~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .+...+..+++++++.++++....+.|.+|+. .+....  +......+ ......+++.+.++...++.|..++.
T Consensus       185 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~-~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          185 TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARP-HAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE-EEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCc-eEEEECCCCCEEEeccCCCeEEEECC
Confidence            33456889999999988777766788999998 333211  11111112 22234556667777766788888875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.17  E-value=1.3e-09  Score=96.44  Aligned_cols=187  Identities=10%  Similarity=0.021  Sum_probs=128.2

Q ss_pred             CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcC-
Q 021484           40 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKN-  117 (312)
Q Consensus        40 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~-  117 (312)
                      |.+ .++++...+++|.++|..+++++.              .+ . ....+..++|+|+|+++.++ .++.|.+||+. 
T Consensus       165 ~~~-~~~V~~~~~~~V~viD~~t~~v~~--------------~i-~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~  227 (567)
T 1qks_A          165 LEN-LFSVTLRDAGQIALIDGSTYEIKT--------------VL-D-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWM  227 (567)
T ss_dssp             GGG-EEEEEETTTTEEEEEETTTCCEEE--------------EE-E-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             CCc-eEEEEeCCCCeEEEEECCCCeEEE--------------EE-e-CCCCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence            433 566777789999999999887432              11 1 12346689999999977765 58999999995 


Q ss_pred             -CCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec----CCCCEEEEecc-CceEEEEeccCCeeEEEeecC--
Q 021484          118 -MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG----PNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVGD--  189 (312)
Q Consensus       118 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s----~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~--  189 (312)
                       +.                +.+..+....   ....++| +    |+|+++++++. ++.|.++|..+.+++..+...  
T Consensus       228 ~t~----------------~~v~~i~~G~---~P~~ia~-s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~  287 (567)
T 1qks_A          228 KEP----------------TTVAEIKIGS---EARSIET-SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM  287 (567)
T ss_dssp             SSC----------------CEEEEEECCS---EEEEEEE-CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE
T ss_pred             CCC----------------cEeEEEecCC---CCceeEE-ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccc
Confidence             44                4445554322   2678998 7    69999887765 589999999999988877532  


Q ss_pred             --------c-cceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC---CCCCCChhhhhhhhccCCCCceeE-EecCCce
Q 021484          190 --------R-HVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF---PPLPDNAEKIMKANKQGREDHSRI-TLTPDVI  255 (312)
Q Consensus       190 --------~-~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~  255 (312)
                              . ..+..+..++++.. +++...+|.|.++|......   ..+.  .........+.+++++++ +...++.
T Consensus       288 ~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~--~~~~~~d~~~~pdgr~~~va~~~sn~  365 (567)
T 1qks_A          288 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS--AERFLHDGGLDGSHRYFITAANARNK  365 (567)
T ss_dssp             CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE--CCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred             ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee--ccccccCceECCCCCEEEEEeCCCCe
Confidence                    1 26778888988776 44555679999999876431   1110  011112233667777665 4556789


Q ss_pred             EEEEEecccC
Q 021484          256 MHVLRLQRRQ  265 (312)
Q Consensus       256 i~i~~~~~~~  265 (312)
                      |.++|+.+..
T Consensus       366 V~ViD~~t~k  375 (567)
T 1qks_A          366 LVVIDTKEGK  375 (567)
T ss_dssp             EEEEETTTTE
T ss_pred             EEEEECCCCc
Confidence            9999987654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.17  E-value=6e-09  Score=86.05  Aligned_cols=189  Identities=11%  Similarity=-0.004  Sum_probs=121.0

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEE
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVY  112 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~  112 (312)
                      ..+.+|+|+++.++++...++.|..||..+++..               .+  .....+.+++|+++|+++++..+ .|+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~---------------~~--~~~~~v~~i~~~~dg~l~v~~~~-gl~  112 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT---------------VH--ALPFMGSALAKISDSKQLIASDD-GLF  112 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE---------------EE--ECSSCEEEEEEEETTEEEEEETT-EEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE---------------EE--ECCCcceEEEEeCCCeEEEEECC-CEE
Confidence            4678999986578888888899999999877521               01  11356899999999998777644 499


Q ss_pred             EEEcCCCcCCCCCcCCcccccCCCCCceEecc---cCCceeeEEEEecCCCCEEEEecc------CceEEEEeccCCeeE
Q 021484          113 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH---RNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKKKGGKLV  183 (312)
Q Consensus       113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~s~~~~~l~~~~~------dg~v~iwd~~~~~~~  183 (312)
                      +||..++                +. ..+...   .....+.++++ +++|+++++...      .+.|..++  +++..
T Consensus       113 ~~d~~~g----------------~~-~~~~~~~~~~~~~~~~~i~~-d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~  172 (326)
T 2ghs_A          113 LRDTATG----------------VL-TLHAELESDLPGNRSNDGRM-HPSGALWIGTMGRKAETGAGSIYHVA--KGKVT  172 (326)
T ss_dssp             EEETTTC----------------CE-EEEECSSTTCTTEEEEEEEE-CTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE
T ss_pred             EEECCCC----------------cE-EEEeeCCCCCCCCCCCCEEE-CCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE
Confidence            9998765                22 222211   11123788998 899987765432      25666666  46543


Q ss_pred             EEeecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCC--CC-CCCC------CCCChhhhhhhhccCCCCceeEEecCC
Q 021484          184 RLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPM--PT-DFPP------LPDNAEKIMKANKQGREDHSRITLTPD  253 (312)
Q Consensus       184 ~~~~~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~--~~-~~~~------~~~~~~~~~~~~~~~~~~~~l~s~~~d  253 (312)
                      . +..+......++|+|+++.++.+ +.++.|.+|++.  ++ .+..      +... ........+..++.+.++...+
T Consensus       173 ~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~-~~~p~gi~~d~~G~lwva~~~~  250 (326)
T 2ghs_A          173 K-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDAEGHIWNARWGE  250 (326)
T ss_dssp             E-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECTTSCEEEEEETT
T ss_pred             E-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC-CCCCCeeEECCCCCEEEEEeCC
Confidence            3 32233456789999999876544 467899999986  44 3211      1101 1111222344566777776666


Q ss_pred             ceEEEEEe
Q 021484          254 VIMHVLRL  261 (312)
Q Consensus       254 ~~i~i~~~  261 (312)
                      +.|..|+.
T Consensus       251 ~~v~~~d~  258 (326)
T 2ghs_A          251 GAVDRYDT  258 (326)
T ss_dssp             TEEEEECT
T ss_pred             CEEEEECC
Confidence            77888875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.14  E-value=1.2e-08  Score=83.01  Aligned_cols=162  Identities=8%  Similarity=0.057  Sum_probs=105.0

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      ...+.+++++|++ +++++ . ++.|.+||..+++....          ... ........+..++++|+|+++++. ..
T Consensus        53 ~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~~~~----------~~~-~~~~~~~~~~di~~d~dG~l~~~~~~~  118 (297)
T 3g4e_A           53 DAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSAVVL----------ATV-DNDKKNNRFNDGKVDPAGRYFAGTMAE  118 (297)
T ss_dssp             SSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEEEEE----------EEC-CTTCSSEEEEEEEECTTSCEEEEEEEC
T ss_pred             CCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcEEEE----------Eec-CCCCCCCCCCCEEECCCCCEEEecCCc
Confidence            4568999999999 55544 3 57899999987763210          000 001123457889999999977764 22


Q ss_pred             ---------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE-EEeccCceEEEEec-
Q 021484          109 ---------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKK-  177 (312)
Q Consensus       109 ---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l-~~~~~dg~v~iwd~-  177 (312)
                               ..-.+|.+...                .....+......  ...++| +|+++.| ++.+.++.|.+|++ 
T Consensus       119 ~~~~~~~~~~~~~l~~~d~~----------------g~~~~~~~~~~~--pngi~~-spdg~~lyv~~~~~~~i~~~~~d  179 (297)
T 3g4e_A          119 ETAPAVLERHQGALYSLFPD----------------HHVKKYFDQVDI--SNGLDW-SLDHKIFYYIDSLSYSVDAFDYD  179 (297)
T ss_dssp             CSBTTBCCTTCEEEEEECTT----------------SCEEEEEEEESB--EEEEEE-CTTSCEEEEEEGGGTEEEEEEEC
T ss_pred             ccccccccCCCcEEEEEECC----------------CCEEEEeecccc--ccceEE-cCCCCEEEEecCCCCcEEEEecc
Confidence                     23355554432                122222222222  678999 9999876 45566889999987 


Q ss_pred             -cCCee-----EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          178 -KGGKL-----VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       178 -~~~~~-----~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                       .++..     ...+..+...+..++++++|++.++....+.|..||..++++
T Consensus       180 ~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~  232 (297)
T 3g4e_A          180 LQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR  232 (297)
T ss_dssp             TTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE
T ss_pred             CCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE
Confidence             45543     222333345678999999999888887788999999986653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.13  E-value=1.9e-08  Score=83.97  Aligned_cols=190  Identities=8%  Similarity=-0.060  Sum_probs=117.5

Q ss_pred             EEEcCCCCcEEEEEeC-----CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec---
Q 021484           36 IVIDPRNPNYFAVGGS-----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---  107 (312)
Q Consensus        36 ~~~~p~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---  107 (312)
                      ....|++ +.+++...     ++.|.+.|..+.+++.              .+..+ ..+ . ++++|+|+.+..++   
T Consensus        38 ~~~~pd~-~~vyV~~~~~~~~~~~V~ViD~~t~~v~~--------------~I~vG-~~P-~-va~spDG~~lyVan~~~   99 (386)
T 3sjl_D           38 EAPAPDA-RRVYVNDPAHFAAVTQQFVIDGEAGRVIG--------------MIDGG-FLP-N-PVVADDGSFIAHASTVF   99 (386)
T ss_dssp             CCCCCCT-TEEEEEECGGGCSSEEEEEEETTTTEEEE--------------EEEEC-SSC-E-EEECTTSSCEEEEEEEE
T ss_pred             eccCCCC-CEEEEEcCcccCCCCEEEEEECCCCeEEE--------------EEECC-CCC-c-EEECCCCCEEEEEcccc
Confidence            4456888 45555443     6899999999988432              22122 223 4 99999998554432   


Q ss_pred             --------CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC-----CceeeEEEEecCCCCEEEEecc--CceE
Q 021484          108 --------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-----SQTVKGVNFFGPNDEYVMSGSD--CGHL  172 (312)
Q Consensus       108 --------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~v~~~s~~~~~l~~~~~--dg~v  172 (312)
                              ++.|.+||..+.                +.+..+.....     ......+.+ +|+|++++++..  ++.|
T Consensus       100 ~r~~~G~~~~~VsviD~~t~----------------~v~~~I~v~~g~r~~~g~~P~~~a~-spDGk~lyVan~~~~~~V  162 (386)
T 3sjl_D          100 SRIARGERTDYVEVFDPVTL----------------LPTADIELPDAPRFLVGTYPWMTSL-TPDGKTLLFYQFSPAPAV  162 (386)
T ss_dssp             EETTEEEEEEEEEEECTTTC----------------CEEEEEEETTCCCCCBSCCGGGEEE-CTTSSEEEEEECSSSCEE
T ss_pred             cccccCCCCCEEEEEECCCC----------------eEEEEEECCCccccccCCCCceEEE-cCCCCEEEEEEcCCCCeE
Confidence                    578999999887                55555542210     012567888 999999988864  6899


Q ss_pred             EEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC-CCC-----CCCCCChhhhhhhhcc-CCCCc
Q 021484          173 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP-TDF-----PPLPDNAEKIMKANKQ-GREDH  245 (312)
Q Consensus       173 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~-~~~-----~~~~~~~~~~~~~~~~-~~~~~  245 (312)
                      .++|+.+++.+.++....  . ...+....+.+++.+.||++.+.++.. +++     ..+......+.....+ .++++
T Consensus       163 sVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~  239 (386)
T 3sjl_D          163 GVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR  239 (386)
T ss_dssp             EEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             EEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc
Confidence            999999999998886432  1 122322344566777788888888765 443     1111111111111111 23454


Q ss_pred             eeEEecCCceEEEEEeccc
Q 021484          246 SRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       246 ~l~s~~~d~~i~i~~~~~~  264 (312)
                      +++ .+.++.+.+.|+...
T Consensus       240 ~~~-vs~~g~V~v~d~~~~  257 (386)
T 3sjl_D          240 LVW-PTYTGKIHQIDLSSG  257 (386)
T ss_dssp             EEE-EBTTSEEEEEECTTS
T ss_pred             EEE-EeCCCEEEEEECCCC
Confidence            444 555789999998654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.13  E-value=2.3e-09  Score=98.47  Aligned_cols=219  Identities=6%  Similarity=-0.083  Sum_probs=124.9

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCC--------------eEEEEEccCCeec
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE--------------YARVYDIRKCHWY   66 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg--------------~i~iwd~~~~~~~   66 (312)
                      |++||+.+.+.... ...           ...+..++|+|+ . .|+.++.++              .|++|++.+++..
T Consensus       191 i~v~dl~tg~~~~~-~~~-----------~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~  256 (741)
T 1yr2_A          191 VKFVGVADGKPLAD-ELK-----------WVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA  256 (741)
T ss_dssp             EEEEETTTCCEEEE-EEE-----------EEESCCCEESTT-S-EEEEEECCCC--------CCCCCEEEEEETTSCGGG
T ss_pred             EEEEECCCCCCCCc-cCC-----------CceeccEEEECC-C-EEEEEEecCcccccccccCCCCCEEEEEECCCCchh
Confidence            46788877654322 111           112357899998 4 444444443              3888998766410


Q ss_pred             CCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC-----cEEEEEcCCCcCCCCCcCCcccccCCCC-Cc
Q 021484           67 SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREE-PQ  139 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~  139 (312)
                             ..   ..... ..+...+..+.|+|+|++|+.. .++     .|++||+.++.               .. ..
T Consensus       257 -------~~---lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~---------------~~~~~  310 (741)
T 1yr2_A          257 -------DQ---PVFAT-PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK---------------IGPVT  310 (741)
T ss_dssp             -------CE---EEECC-TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE---------------ECCCE
T ss_pred             -------CE---EEecc-CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC---------------CcccE
Confidence                   00   00000 2233358899999999977664 333     79999987641               12 45


Q ss_pred             eEecccCCceeeEEEEecCCCCEEEEecc----CceEEEEeccCC--eeEEEeecCccceEEEEEcCCCCeEEEEeCCCc
Q 021484          140 VYSGHRNSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWKKKGG--KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKT  213 (312)
Q Consensus       140 ~~~~~~~~~~v~~v~~~s~~~~~l~~~~~----dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~  213 (312)
                      .+..+...  +... + +++++.|+..+.    .+.|.+||+.++  +....+..+...+..+.|+ .+.++++...|+.
T Consensus       311 ~l~~~~~~--~~~~-~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~  385 (741)
T 1yr2_A          311 ALIPDLKA--QWDF-V-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK  385 (741)
T ss_dssp             EEECSSSS--CEEE-E-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred             EecCCCCc--eEEE-E-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            55555433  4444 3 467887776665    456999999874  4444445555567778887 5566888888988


Q ss_pred             EEEccCC--CCCCCCCCCChhhhhhhhccCCCCceeE-E---ecCCceEEEEEeccc
Q 021484          214 VKLWAPM--PTDFPPLPDNAEKIMKANKQGREDHSRI-T---LTPDVIMHVLRLQRR  264 (312)
Q Consensus       214 i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s---~~~d~~i~i~~~~~~  264 (312)
                      .+||.+.  ++....+.......+....+++++..++ +   ....+.++.||+.++
T Consensus       386 ~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          386 SQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA  442 (741)
T ss_dssp             EEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred             EEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            7777543  3333333211111122223445554443 3   334478888887654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.07  E-value=3.1e-08  Score=81.74  Aligned_cols=155  Identities=9%  Similarity=-0.021  Sum_probs=100.6

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccccc-CCCccEEEEEEccCCCeEEEec-C
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNTSELLISYN-D  108 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~-d  108 (312)
                      ..+.+++|+|++ +++++. . ..|.+||..+++....          .  .... .....+..++++|+|+++++.. +
T Consensus        90 ~~v~~i~~~~dg-~l~v~~-~-~gl~~~d~~~g~~~~~----------~--~~~~~~~~~~~~~i~~d~~G~l~v~~~~~  154 (326)
T 2ghs_A           90 FMGSALAKISDS-KQLIAS-D-DGLFLRDTATGVLTLH----------A--ELESDLPGNRSNDGRMHPSGALWIGTMGR  154 (326)
T ss_dssp             SCEEEEEEEETT-EEEEEE-T-TEEEEEETTTCCEEEE----------E--CSSTTCTTEEEEEEEECTTSCEEEEEEET
T ss_pred             CcceEEEEeCCC-eEEEEE-C-CCEEEEECCCCcEEEE----------e--eCCCCCCCCCCCCEEECCCCCEEEEeCCC
Confidence            468999999998 666554 4 4599999887753110          0  0000 1124588999999999777653 2


Q ss_pred             ------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE-EeccCceEEEEecc--C
Q 021484          109 ------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKK--G  179 (312)
Q Consensus       109 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~-~~~~dg~v~iwd~~--~  179 (312)
                            +.|+.++  ++                +. ..+......  ...++| +++++.|+ +.+.++.|.+|++.  +
T Consensus       155 ~~~~~~~~l~~~~--~g----------------~~-~~~~~~~~~--~~~i~~-s~dg~~lyv~~~~~~~I~~~d~~~~~  212 (326)
T 2ghs_A          155 KAETGAGSIYHVA--KG----------------KV-TKLFADISI--PNSICF-SPDGTTGYFVDTKVNRLMRVPLDART  212 (326)
T ss_dssp             TCCTTCEEEEEEE--TT----------------EE-EEEEEEESS--EEEEEE-CTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred             cCCCCceEEEEEe--CC----------------cE-EEeeCCCcc--cCCeEE-cCCCCEEEEEECCCCEEEEEEccccc
Confidence                  4566666  33                22 222222222  678998 99998765 44567899999986  5


Q ss_pred             C-e-----eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          180 G-K-----LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       180 ~-~-----~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                      + +     ....+......+..++++++|.+.++...++.|..|+..+.
T Consensus       213 Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~  261 (326)
T 2ghs_A          213 GLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN  261 (326)
T ss_dssp             CCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC
T ss_pred             CCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCC
Confidence            5 3     22233333456788999999998877767789999998543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.07  E-value=1.6e-09  Score=98.83  Aligned_cols=198  Identities=9%  Similarity=0.105  Sum_probs=118.5

Q ss_pred             CCccceEEEEEcCCCCcEEEE-E----eCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe
Q 021484           28 MNSIRLNAIVIDPRNPNYFAV-G----GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL  102 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~-~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  102 (312)
                      +|...+..++|||++ ++||- .    +....|++||+.+++..             ...+ .  ......++|+ |++.
T Consensus       126 ~~~~~l~~~~~SpDg-~~lAy~~~~~G~~~~~i~v~dl~tg~~~-------------~~~~-~--~~k~~~~~Ws-Dg~~  187 (693)
T 3iuj_A          126 DGTTALDQLSFSRDG-RILAYSLSLAGSDWREIHLMDVESKQPL-------------ETPL-K--DVKFSGISWL-GNEG  187 (693)
T ss_dssp             TSCCEEEEEEECTTS-SEEEEEEECSSCCEEEEEEEETTTCSEE-------------EEEE-E--EEESCCCEEE-TTTE
T ss_pred             CCcEEEEEEEECCCC-CEEEEEEecCCCceEEEEEEECCCCCCC-------------cccc-C--CceeccEEEe-CCCE
Confidence            456678999999999 56653 2    23357999999988731             0011 1  0112467899 9986


Q ss_pred             EEEe-cCC-------------cEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc-CCceeeEEEEecCCCCEEEEec
Q 021484          103 LISY-NDE-------------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGS  167 (312)
Q Consensus       103 l~s~-~d~-------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~s~~~~~l~~~~  167 (312)
                      |+.+ .+.             .|++|++.+...              +....+.... .......+.| +|++++|+...
T Consensus       188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~--------------~~~~v~~~~~~~~~~~~~~~~-SpDg~~l~~~~  252 (693)
T 3iuj_A          188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE--------------DDRLVFGAIPAQHHRYVGATV-TEDDRFLLISA  252 (693)
T ss_dssp             EEEEESSCCC-------CCCCEEEEEETTSCGG--------------GCEEEESCSGGGCCSEEEEEE-CTTSCEEEEEE
T ss_pred             EEEEEecCcccccccccCCCcEEEEEECCCCcc--------------cceEEEecCCCCCeEEEEEEE-cCCCCEEEEEE
Confidence            6664 443             399999876510              1122232221 1223678888 99999886443


Q ss_pred             c----CceEEEEeccCCe-eEEEeecCccceEEEEEcCCCCeEE-EEeCC---CcEEEccCCCCCC---CCCCCChhhhh
Q 021484          168 D----CGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPHPHIPMFA-TCGIE---KTVKLWAPMPTDF---PPLPDNAEKIM  235 (312)
Q Consensus       168 ~----dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~-t~~~d---~~i~iwd~~~~~~---~~~~~~~~~~~  235 (312)
                      .    ...|+++|+.++. ....+..+....... |++++..|+ ....+   +.|..+++.+...   ..+..+...++
T Consensus       253 ~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  331 (693)
T 3iuj_A          253 ANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL  331 (693)
T ss_dssp             ESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred             ccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE
Confidence            2    3589999987763 344555565555554 666666644 44433   5789999887643   33333444443


Q ss_pred             hhhccCCCCceeEEe-cCCc--eEEEEEec
Q 021484          236 KANKQGREDHSRITL-TPDV--IMHVLRLQ  262 (312)
Q Consensus       236 ~~~~~~~~~~~l~s~-~~d~--~i~i~~~~  262 (312)
                         .+++++..++.. ..++  .|++|++.
T Consensus       332 ---~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          332 ---TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             ---EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             ---EEEEECCEEEEEEEECCeeEEEEEECC
Confidence               455655555544 4444  56777765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.05  E-value=7.7e-11  Score=99.11  Aligned_cols=180  Identities=9%  Similarity=0.042  Sum_probs=91.9

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP  122 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~  122 (312)
                      ..+++++.|+.|+.||..+++.......                 ..+.+..+..++.+++++ .|+.|+.||..++   
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG---   69 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE-----------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNN---   69 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEEC-----------------CCSCCCC-----CCEEECTTTCCEEEC--------
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEecC-----------------CCceecceEcCCCEEEEeCCCCEEEEEECCCC---
Confidence            5889999999999999999985432111                 122233344567677764 6999999999877   


Q ss_pred             CCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC
Q 021484          123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI  202 (312)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~  202 (312)
                                   +.+..+..+... .+.+.-. -..+..+++++.++.|+.||..+|+.+..+..+.    ...++|++
T Consensus        70 -------------~~~w~~~~~~~~-~~~~sp~-~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~  130 (369)
T 2hz6_A           70 -------------EGLTKLPFTIPE-LVQASPC-RSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPST  130 (369)
T ss_dssp             -------------CCSEECSCCHHH-HHTTCSC-C-----CCCCEEEEEEEEECCC------------------------
T ss_pred             -------------ceeeeeeccCcc-ccccCce-EecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccC
Confidence                         444444322110 0111000 1135567888899999999999999887766543    24567788


Q ss_pred             CeEEEEeCCCcEEEccCCCCCCC-CCCCChhhhhhhhccCCC---CceeEEecCCceEEEEEecccC
Q 021484          203 PMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGRE---DHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       203 ~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      ..+++++.|+.|+.||.++++.. .+....  . .......+   ...++.++.++.++.||..++.
T Consensus       131 ~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~-~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          131 SLLYLGRTEYTITMYDTKTRELRWNATYFD--Y-AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             --EEEEEEEEEEECCCSSSSSCCCEEEEEE--E-CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             CEEEEEecCCEEEEEECCCCCEEEeEeccc--c-cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence            88999999999999999887642 221110  0 11111111   1467778889999999987663

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.05  E-value=2.3e-08  Score=81.70  Aligned_cols=153  Identities=10%  Similarity=0.021  Sum_probs=105.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCc
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL  110 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~  110 (312)
                      ......|+|++..+++++..++.|..|+. +++.               ..+ ..+...+..++++++|+++++. .++.
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~---------------~~~-~~~~~~~~gl~~d~dG~l~v~~~~~~~  108 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV---------------DVL-LDATAFTNGNAVDAQQRLVHCEHGRRA  108 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE---------------EEE-EESCSCEEEEEECTTSCEEEEETTTTE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE---------------EEE-eCCCCccceeeECCCCCEEEEECCCCE
Confidence            46789999998447888888999999987 3431               011 2234568899999999977776 4688


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC---CceeeEEEEecCCCCEEEE----ecc-------------Cc
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---SQTVKGVNFFGPNDEYVMS----GSD-------------CG  170 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~~~s~~~~~l~~----~~~-------------dg  170 (312)
                      |.+|+.. +                +. ..+.....   ...+..+++ +++|+++++    |..             .+
T Consensus       109 v~~~~~~-g----------------~~-~~~~~~~~~~~~~~~~~i~~-d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~  169 (305)
T 3dr2_A          109 ITRSDAD-G----------------QA-HLLVGRYAGKRLNSPNDLIV-ARDGAIWFTDPPFGLRKPSQGCPADPELAHH  169 (305)
T ss_dssp             EEEECTT-S----------------CE-EEEECEETTEECSCCCCEEE-CTTSCEEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred             EEEECCC-C----------------CE-EEEEeccCCCccCCCCCEEE-CCCCCEEEeCcCCCccccccccccccccCCC
Confidence            9999875 3                21 22211111   012678998 899998886    432             35


Q ss_pred             eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC------CcEEEccCCCC
Q 021484          171 HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMPT  222 (312)
Q Consensus       171 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d------~~i~iwd~~~~  222 (312)
                      .|+.+|..+++.....  .......++|+|+++.|+.+...      +.|.+|++...
T Consensus       170 ~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          170 SVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             EEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             eEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence            7888888777654333  33456889999999987776654      78999998653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.04  E-value=1.2e-08  Score=92.94  Aligned_cols=217  Identities=8%  Similarity=0.008  Sum_probs=122.6

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCC-------------eEEEEEccCCeecC
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE-------------YARVYDIRKCHWYS   67 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg-------------~i~iwd~~~~~~~~   67 (312)
                      |++||+.+.+.... ...           ......++|+ ++ +.|+.++.+.             .|++|++.+.+.. 
T Consensus       157 i~v~dl~tg~~~~~-~~~-----------~~k~~~~~Ws-Dg-~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-  221 (693)
T 3iuj_A          157 IHLMDVESKQPLET-PLK-----------DVKFSGISWL-GN-EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED-  221 (693)
T ss_dssp             EEEEETTTCSEEEE-EEE-----------EEESCCCEEE-TT-TEEEEEESSCCC-------CCCCEEEEEETTSCGGG-
T ss_pred             EEEEECCCCCCCcc-ccC-----------CceeccEEEe-CC-CEEEEEEecCcccccccccCCCcEEEEEECCCCccc-
Confidence            46788877653322 111           1113578899 88 6666666553             4999998866410 


Q ss_pred             CCCCCCCcccccccccccC-CCccEEEEEEccCCCeEEE-ec----CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceE
Q 021484           68 PISSDTPVDTFCPRHLIGK-NNIHITGLAYSNTSELLIS-YN----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY  141 (312)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s-~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (312)
                            ..   ..... .. |......+.|+|+|++|+. ..    ...|+++|+.++.               .....+
T Consensus       222 ------~~---~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~---------------~~~~~l  276 (693)
T 3iuj_A          222 ------DR---LVFGA-IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN---------------APLLTV  276 (693)
T ss_dssp             ------CE---EEESC-SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT---------------CCCEEE
T ss_pred             ------ce---EEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC---------------CceEEE
Confidence                  00   01000 22 3445788999999996654 22    2589999997651               244555


Q ss_pred             ecccCCceeeEEEEecCCCCEE-EEeccC---ceEEEEeccCCee--EEEeecCccceEEEEEcCCCCeEEEEeC-CC--
Q 021484          142 SGHRNSQTVKGVNFFGPNDEYV-MSGSDC---GHLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--  212 (312)
Q Consensus       142 ~~~~~~~~v~~v~~~s~~~~~l-~~~~~d---g~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~t~~~-d~--  212 (312)
                      ..+...  .... + ++++..| +....+   +.|..+++.++..  ...+..|...+.  .|+|+++.|+.... ++  
T Consensus       277 ~~~~~~--~~~~-~-~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~  350 (693)
T 3iuj_A          277 QGDLDA--DVSL-V-DNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATA  350 (693)
T ss_dssp             ECSSSS--CEEE-E-EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEE
T ss_pred             eCCCCc--eEEE-E-eccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCee
Confidence            555543  4443 4 4455544 444443   6899999987654  345555665554  88999998776664 43  


Q ss_pred             cEEEccCCCCCCCCCCC-ChhhhhhhhccCCCCc-eeEEecC---CceEEEEEeccc
Q 021484          213 TVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDH-SRITLTP---DVIMHVLRLQRR  264 (312)
Q Consensus       213 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~s~~~---d~~i~i~~~~~~  264 (312)
                      .|++|++.++....+.- ....+ ......+++. ++++.+.   -+.+..+++...
T Consensus       351 ~l~~~d~~g~~~~~l~~p~~~~~-~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          351 RVEQFDYEGKRVREVALPGLGSV-SGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             EEEEECTTSCEEEEECCSSSSEE-EECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             EEEEEECCCCeeEEeecCCCceE-EeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence            68999988664332221 11112 1112333433 3333332   267777776544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.97  E-value=4.5e-07  Score=76.16  Aligned_cols=230  Identities=10%  Similarity=-0.048  Sum_probs=128.7

Q ss_pred             EEEEcCCCCcEEEEEe----------CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021484           35 AIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  104 (312)
Q Consensus        35 ~~~~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  104 (312)
                      .++++|++ +.++++.          .++.|.+||..+.+....+..+.+      ... . +......++|+|+|++|+
T Consensus        70 ~i~~spDg-~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~------~~~-~-~g~~p~~~~~spDG~~l~  140 (373)
T 2mad_H           70 NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA------PRF-D-VGPYSWMNANTPNNADLL  140 (373)
T ss_pred             CeEECCCC-CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc------ccc-c-cCCCccceEECCCCCEEE
Confidence            89999999 5666654          367899999988764332211100      000 0 012345889999999777


Q ss_pred             Ee--c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCce-EecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC
Q 021484          105 SY--N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG  180 (312)
Q Consensus       105 s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~  180 (312)
                      .+  . ++.|.++| .++                +.... +...      .++.+.....+.+++.+.||.+.++|. ++
T Consensus       141 v~n~~~~~~v~viD-~t~----------------~~~~~~i~~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g  196 (373)
T 2mad_H          141 FFQFAAGPAVGLVV-QGG----------------SSDDQLLSSP------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AG  196 (373)
T ss_pred             EEecCCCCeEEEEE-CCC----------------CEEeEEcCCC------ceEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence            64  3 57899999 876                44444 3211      123331333355667778999999999 88


Q ss_pred             eeEEEee-----cCccce-EEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC---CCCCChh---------hhhhhhccCC
Q 021484          181 KLVRLMV-----GDRHVV-NQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP---PLPDNAE---------KIMKANKQGR  242 (312)
Q Consensus       181 ~~~~~~~-----~~~~~v-~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~---~~~~~~~---------~~~~~~~~~~  242 (312)
                      +.+....     ....++ ....+.+++..++..+.++.+.+.|+.+....   .+.-...         .-......++
T Consensus       197 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~  276 (373)
T 2mad_H          197 GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK  276 (373)
T ss_pred             cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC
Confidence            7663322     111221 23456666665444457789999998765321   1110000         0001122345


Q ss_pred             CCceeEEec----------CCceEEEEEecccCccce---------eEeecCCC-ccCCCC-CCCeEEEeecCCCC
Q 021484          243 EDHSRITLT----------PDVIMHVLRLQRRQTLAY---------RERRYNAA-DFESDE-EEGETYLLGFSDSD  297 (312)
Q Consensus       243 ~~~~l~s~~----------~d~~i~i~~~~~~~~~~~---------~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~  297 (312)
                      ++..+....          .++.|.++|..+......         +.+++++. .+.... .++.|.++|...+.
T Consensus       277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence            544444432          235788888766543222         24555555 343333 46678888876655

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.97  E-value=4.2e-08  Score=81.85  Aligned_cols=157  Identities=10%  Similarity=-0.033  Sum_probs=95.9

Q ss_pred             EEEEcCCCCcEEEEEe----------CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021484           35 AIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  104 (312)
Q Consensus        35 ~~~~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  104 (312)
                      .++++|++ +.++++.          .++.|.+||..+.+....+..+..      ...  ........++++|+|+++.
T Consensus        82 ~va~spDG-~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g------~r~--~~g~~P~~~a~spDGk~ly  152 (386)
T 3sjl_D           82 NPVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA------PRF--LVGTYPWMTSLTPDGKTLL  152 (386)
T ss_dssp             EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC------CCC--CBSCCGGGEEECTTSSEEE
T ss_pred             cEEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc------ccc--ccCCCCceEEEcCCCCEEE
Confidence            39999999 5554443          367899999998874322210000      000  0012344689999999665


Q ss_pred             Ee--c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC-C
Q 021484          105 SY--N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-G  180 (312)
Q Consensus       105 s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~-~  180 (312)
                      .+  . ++.|.++|+.++                +.+..+....    . ...+ +...+.+++.+.||.+.+.++.+ +
T Consensus       153 Van~~~~~~VsVID~~t~----------------~vv~tI~v~g----~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g  210 (386)
T 3sjl_D          153 FYQFSPAPAVGVVDLEGK----------------AFKRMLDVPD----C-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEG  210 (386)
T ss_dssp             EEECSSSCEEEEEETTTT----------------EEEEEEECCS----E-EEEE-EEETTEEEEEETTSCEEEEECCSSS
T ss_pred             EEEcCCCCeEEEEECCCC----------------cEEEEEECCC----c-ceee-cCCCceeEEECCCCCEEEEECCCCC
Confidence            54  3 689999999887                5666654321    1 2233 44556777888899999998876 5


Q ss_pred             eeEEEeecC----ccce-EEEEEc-CCCCeEEEEeCCCcEEEccCCCCC
Q 021484          181 KLVRLMVGD----RHVV-NQLEPH-PHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       181 ~~~~~~~~~----~~~v-~~~~~~-p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      +.......+    ..++ ....|. ++|+++. .+.+|+|.+.|+.+..
T Consensus       211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~  258 (386)
T 3sjl_D          211 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD  258 (386)
T ss_dssp             CCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS
T ss_pred             eEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc
Confidence            543322111    1122 124554 6775544 5568999999998765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.93  E-value=5.1e-09  Score=87.10  Aligned_cols=182  Identities=12%  Similarity=0.102  Sum_probs=105.6

Q ss_pred             CccceEEEEEcCCCCcEEEEEeC-----CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-Ce
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGS-----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-EL  102 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~  102 (312)
                      |-..+..+++++++ +++++-..     ++.|.+||+.++++...+..+..        . ..+...+..+++++++ .+
T Consensus        65 ~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~--------~-~~~~~~~~~v~vd~~~g~~  134 (343)
T 2qe8_A           65 TFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP--------I-TLSNSFVNDLAVDLIHNFV  134 (343)
T ss_dssp             CCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT--------T-SCTTCCCCEEEEETTTTEE
T ss_pred             ceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh--------h-cccccccceEEEecCCCEE
Confidence            56789999999998 66666543     58999999998874322211100        0 1223456789999864 44


Q ss_pred             EEE-e---cCCcEEEEEcCCCcCC--CC--CcCCccc---ccCCCCCceEec------ccCCceeeEEEEecCCCCEEEE
Q 021484          103 LIS-Y---NDELVYLFEKNMGLGP--SP--LSLSPED---LQKREEPQVYSG------HRNSQTVKGVNFFGPNDEYVMS  165 (312)
Q Consensus       103 l~s-~---~d~~i~iwd~~~~~~~--~~--~~~~~~~---~~~~~~~~~~~~------~~~~~~v~~v~~~s~~~~~l~~  165 (312)
                      +++ .   .++.|.+||+.++...  ..  ..+....   ............      ...  .+..++| +|+++.|+.
T Consensus       135 yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~--~~~gia~-s~dg~~ly~  211 (343)
T 2qe8_A          135 YISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL--GVNGIVL-DAENEWLYL  211 (343)
T ss_dssp             EEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC--CEEEEEE-CTTSCEEEE
T ss_pred             EEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceec--ccceeEe-ccCCCEEEE
Confidence            455 3   4788999998765200  00  0000000   000000000000      011  2678999 999998887


Q ss_pred             eccCc-eEEEEecc---CCe-----eEE--EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          166 GSDCG-HLFIWKKK---GGK-----LVR--LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       166 ~~~dg-~v~iwd~~---~~~-----~~~--~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      +...+ .++.++..   .+.     ...  ...++......++++++|.++++...++.|.+||..+++
T Consensus       212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          212 SPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             EESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             EeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence            76655 56655532   111     000  111233456679999999999998889999999984443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.93  E-value=7.7e-07  Score=74.70  Aligned_cols=146  Identities=9%  Similarity=-0.062  Sum_probs=96.3

Q ss_pred             EEcCCCCcEEEEEeC--CC---eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec----
Q 021484           37 VIDPRNPNYFAVGGS--DE---YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----  107 (312)
Q Consensus        37 ~~~p~~~~~l~~~~~--dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----  107 (312)
                      ...|++ +.+++...  ..   .|.++|..++++...              +..+ ..+  .++++|+|+.+..+.    
T Consensus        27 ~~~~~~-~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~--------------i~~g-~~p--~i~~spDg~~lyv~n~~~~   88 (373)
T 2mad_H           27 APGADG-RRSYINLPAHHSAIIQQWVLDAGSGSILGH--------------VNGG-FLP--NPVAAHSGSEFALASTSFS   88 (373)
T ss_pred             cCCCCC-CEEEEeCCcccCCccEEEEEECCCCeEEEE--------------ecCC-CCC--CeEECCCCCEEEEEecccc
Confidence            344666 55555542  33   889999998874321              1111 222  899999999666652    


Q ss_pred             -------CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc--cC---CceeeEEEEecCCCCEEEEecc--CceEE
Q 021484          108 -------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--RN---SQTVKGVNFFGPNDEYVMSGSD--CGHLF  173 (312)
Q Consensus       108 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~v~~v~~~s~~~~~l~~~~~--dg~v~  173 (312)
                             ++.|.+||..+.                +.+..+...  ..   ......+.+ +|+|++|++++.  ++.|.
T Consensus        89 ~~~rg~~~~~v~viD~~t~----------------~~~~~i~~~~~~~~~~g~~p~~~~~-spDG~~l~v~n~~~~~~v~  151 (373)
T 2mad_H           89 RIAKGKRTDYVEVFDPVTF----------------LPIADIELPDAPRFDVGPYSWMNAN-TPNNADLLFFQFAAGPAVG  151 (373)
T ss_pred             ccccCCCCCeEEEEECCCC----------------cEEEEEECCCccccccCCCccceEE-CCCCCEEEEEecCCCCeEE
Confidence                   567999999775                444443321  00   011457888 999999998874  57899


Q ss_pred             EEeccCCeeEEE-eecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCC
Q 021484          174 IWKKKGGKLVRL-MVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       174 iwd~~~~~~~~~-~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~  223 (312)
                      ++| .+++.+.. +... .   ++.+.|.++ .+++.+.||.+.+++. +++
T Consensus       152 viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~  197 (373)
T 2mad_H          152 LVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG  197 (373)
T ss_pred             EEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence            999 99998877 6532 2   244556654 4667778999999999 654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.89  E-value=1.4e-07  Score=77.04  Aligned_cols=187  Identities=9%  Similarity=0.041  Sum_probs=110.5

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE----
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS----  105 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s----  105 (312)
                      ...+..+++++++ +++++...++.|..|+.. ++..          .+. ..........+..+++.++|.++++    
T Consensus        85 ~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~~----------~~~-~~~~~~~~~~~~~i~~d~dG~l~~td~~~  151 (305)
T 3dr2_A           85 TAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQAH----------LLV-GRYAGKRLNSPNDLIVARDGAIWFTDPPF  151 (305)
T ss_dssp             CSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEE----------EEE-CEETTEECSCCCCEEECTTSCEEEECCSG
T ss_pred             CCccceeeECCCC-CEEEEECCCCEEEEECCC-CCEE----------EEE-eccCCCccCCCCCEEECCCCCEEEeCcCC
Confidence            4568899999998 677666667889999975 4321          000 0000111234667999999998886    


Q ss_pred             ec--------------CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC--
Q 021484          106 YN--------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC--  169 (312)
Q Consensus       106 ~~--------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d--  169 (312)
                      +.              .+.|+.||..++                +.. .+. ....  ...++| +|+++.|+.+...  
T Consensus       152 g~~~~~~~~~~~~~~~~~~v~~~d~~~g----------------~~~-~~~-~~~~--p~gl~~-spdg~~lyv~~~~~~  210 (305)
T 3dr2_A          152 GLRKPSQGCPADPELAHHSVYRLPPDGS----------------PLQ-RMA-DLDH--PNGLAF-SPDEQTLYVSQTPEQ  210 (305)
T ss_dssp             GGSCGGGSCCCCCSSSCEEEEEECSSSC----------------CCE-EEE-EESS--EEEEEE-CTTSSEEEEEECCC-
T ss_pred             CccccccccccccccCCCeEEEEcCCCC----------------cEE-EEe-cCCC--CcceEE-cCCCCEEEEEecCCc
Confidence            21              245777776554                232 222 2222  678999 9999988777654  


Q ss_pred             ----ceEEEEeccCCeeE--EEe-ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCC
Q 021484          170 ----GHLFIWKKKGGKLV--RLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR  242 (312)
Q Consensus       170 ----g~v~iwd~~~~~~~--~~~-~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  242 (312)
                          +.|++|++..+...  ..+ ......+..++++++|++.++. .+ .|.+|+.....+..+.... .+ ....+.+
T Consensus       211 ~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~g~~~~~~~~~~-~~-~~~~f~~  286 (305)
T 3dr2_A          211 GHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSDGQLLGHIPTPG-TA-SNCTFDQ  286 (305)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTTSCEEEEEECSS-CC-CEEEECT
T ss_pred             CCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECCCCCEEEEEECCC-ce-eEEEEeC
Confidence                78999998765411  111 1123345678999999965554 44 5999998655433332111 12 2222335


Q ss_pred             CCceeEEecCCc
Q 021484          243 EDHSRITLTPDV  254 (312)
Q Consensus       243 ~~~~l~s~~~d~  254 (312)
                      ++..|...+.++
T Consensus       287 d~~~L~it~~~~  298 (305)
T 3dr2_A          287 AQQRLFITGGPC  298 (305)
T ss_dssp             TSCEEEEEETTE
T ss_pred             CCCEEEEEcCCe
Confidence            554555444443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.87  E-value=1.4e-06  Score=73.47  Aligned_cols=158  Identities=8%  Similarity=0.082  Sum_probs=103.9

Q ss_pred             eEEEEEcCCCCcEEEEEeCC------CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           33 LNAIVIDPRNPNYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      -..+...|++  +++++..+      +.|.++|..+.+++..+..+.            ....--..+.|+|+++.++++
T Consensus       140 Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~------------~~~~~~Yd~~~~p~~~~mvsS  205 (462)
T 2ece_A          140 LHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDR------------GDQYLAYDFWWNLPNEVLVSS  205 (462)
T ss_dssp             EEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBC------------TTCCCCCCEEEETTTTEEEEC
T ss_pred             ccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCC------------CCccccceEEECCCCCEEEEc
Confidence            4567788987  55555444      789999999888554332110            111123357889999988887


Q ss_pred             c--------------------CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE-ecCCCCEEEE
Q 021484          107 N--------------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMS  165 (312)
Q Consensus       107 ~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-~s~~~~~l~~  165 (312)
                      .                    ..+|.+||+.++                +..+++...........+.| ++|+++++++
T Consensus       206 ~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~----------------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV  269 (462)
T 2ece_A          206 EWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR----------------KRIHSLTLGEENRMALELRPLHDPTKLMGFI  269 (462)
T ss_dssp             BCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT----------------EEEEEEESCTTEEEEEEEEECSSTTCCEEEE
T ss_pred             cCcCccccccccchhhhhhccCCEEEEEECCCC----------------cEeeEEecCCCCCccceeEeeECCCCCEEEE
Confidence            4                    789999999876                56666654211122445544 4899999887


Q ss_pred             ec------cCceEEEEeccCCeeE--EEe--ecC----------------ccceEEEEEcCCCCeEEEEe-CCCcEEEcc
Q 021484          166 GS------DCGHLFIWKKKGGKLV--RLM--VGD----------------RHVVNQLEPHPHIPMFATCG-IEKTVKLWA  218 (312)
Q Consensus       166 ~~------~dg~v~iwd~~~~~~~--~~~--~~~----------------~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd  218 (312)
                      ++      .+++|.+|....++..  ..+  ...                ...+..+.++|++++|.++. ..+.|.+||
T Consensus       270 ~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavfd  349 (462)
T 2ece_A          270 NMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYD  349 (462)
T ss_dssp             EEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             EEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            76      4668888776655321  111  110                13467899999999977766 578999999


Q ss_pred             CC
Q 021484          219 PM  220 (312)
Q Consensus       219 ~~  220 (312)
                      +.
T Consensus       350 V~  351 (462)
T 2ece_A          350 IS  351 (462)
T ss_dssp             CS
T ss_pred             ec
Confidence            85

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.87  E-value=9.6e-07  Score=74.51  Aligned_cols=202  Identities=10%  Similarity=0.089  Sum_probs=121.2

Q ss_pred             CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccC-CCccEEEEEEccCCCeEEEe-cC------CcE
Q 021484           40 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-NNIHITGLAYSNTSELLISY-ND------ELV  111 (312)
Q Consensus        40 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~-~d------~~i  111 (312)
                      ++...+++.+..+++|.++|+.+..-     .+..+....+..+... .......+...|+| +++++ .+      +.|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~-----~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPR-----EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTT-----SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCC-----CceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            77756777788899999999975410     0001111111111111 11245667888999 66664 34      689


Q ss_pred             EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC-ceeeEEEEecCCCCEEEEec-------------------cCce
Q 021484          112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-QTVKGVNFFGPNDEYVMSGS-------------------DCGH  171 (312)
Q Consensus       112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~s~~~~~l~~~~-------------------~dg~  171 (312)
                      .++|..+.                +.+..+...... ..-..+-| +|+++.+++..                   .+.+
T Consensus       167 ~vlD~~T~----------------~v~~~~~~~~~~~~~~Yd~~~-~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~  229 (462)
T 2ece_A          167 LMLDHYSF----------------EPLGKWEIDRGDQYLAYDFWW-NLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR  229 (462)
T ss_dssp             EEECTTTC----------------CEEEECCSBCTTCCCCCCEEE-ETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE
T ss_pred             EEEECCCC----------------eEEEEEccCCCCccccceEEE-CCCCCEEEEccCcCccccccccchhhhhhccCCE
Confidence            99999876                555555422211 11335666 89999888874                   3789


Q ss_pred             EEEEeccCCeeEEEeecC-c-cceEEEEE--cCCCCeEEEEe------CCCcEEEccCCCCC-------------C-CCC
Q 021484          172 LFIWKKKGGKLVRLMVGD-R-HVVNQLEP--HPHIPMFATCG------IEKTVKLWAPMPTD-------------F-PPL  227 (312)
Q Consensus       172 v~iwd~~~~~~~~~~~~~-~-~~v~~~~~--~p~~~~l~t~~------~d~~i~iwd~~~~~-------------~-~~~  227 (312)
                      |.+||+.+++.+.++... . .....+.|  +|+++++..++      .+++|.+|....+.             . ..+
T Consensus       230 V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~l  309 (462)
T 2ece_A          230 IHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNL  309 (462)
T ss_dssp             EEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSC
T ss_pred             EEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccc
Confidence            999999999888888653 1 23445555  99999955555      56788765543221             1 011


Q ss_pred             CCCh------hhhhhhhccCCCCceeE-EecCCceEEEEEeccc
Q 021484          228 PDNA------EKIMKANKQGREDHSRI-TLTPDVIMHVLRLQRR  264 (312)
Q Consensus       228 ~~~~------~~~~~~~~~~~~~~~l~-s~~~d~~i~i~~~~~~  264 (312)
                      +...      .........++++++|. +.-..+.|.++++...
T Consensus       310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred             cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            1000      11223344667776664 5555689999998643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.86  E-value=3.9e-07  Score=72.06  Aligned_cols=195  Identities=10%  Similarity=0.062  Sum_probs=124.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeC--CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           32 RLNAIVIDPRNPNYFAVGGS--DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      ....+.|+|++ .++++.+.  ++.|++.|+.+++......             +.. ......+++.. +++.++. .+
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-------------l~~-~~fgeGi~~~g-~~lyv~t~~~   85 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHK-------------MDD-SYFGEGLTLLN-EKLYQVVWLK   85 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEE-------------CCT-TCCEEEEEEET-TEEEEEETTC
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEe-------------cCC-CcceEEEEEeC-CEEEEEEecC
Confidence            36799999986 66665543  6899999999998532211             011 11223455542 2344444 59


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  188 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  188 (312)
                      +.+.++|..+.                +.+..+......  -..+   +++++.++++..++.|.++|..+.+.+..+..
T Consensus        86 ~~v~viD~~t~----------------~v~~~i~~g~~~--g~gl---t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V  144 (266)
T 2iwa_A           86 NIGFIYDRRTL----------------SNIKNFTHQMKD--GWGL---ATDGKILYGSDGTSILYEIDPHTFKLIKKHNV  144 (266)
T ss_dssp             SEEEEEETTTT----------------EEEEEEECCSSS--CCEE---EECSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             CEEEEEECCCC----------------cEEEEEECCCCC--eEEE---EECCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence            99999999877                566666533111  2334   44677777777889999999999988887763


Q ss_pred             Cc-----cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCCh--h----------hhhhhhccCCC-CceeEE
Q 021484          189 DR-----HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNA--E----------KIMKANKQGRE-DHSRIT  249 (312)
Q Consensus       189 ~~-----~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~--~----------~~~~~~~~~~~-~~~l~s  249 (312)
                      ..     ..++.+.|. ++..++....++.|.+.|+.++++ ..+.-..  .          .+..-..+.++ .+++++
T Consensus       145 g~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT  223 (266)
T 2iwa_A          145 KYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT  223 (266)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred             CCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence            21     136788888 666566665788999999999874 2222110  0          01122234443 467777


Q ss_pred             ecCCceEEEEEeccc
Q 021484          250 LTPDVIMHVLRLQRR  264 (312)
Q Consensus       250 ~~~d~~i~i~~~~~~  264 (312)
                      +.....+.+.++...
T Consensus       224 gk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          224 GKLWPKLFEIKLHLV  238 (266)
T ss_dssp             ETTCSEEEEEEEEEC
T ss_pred             CCCCCeEEEEEEecc
Confidence            778888888877654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.86  E-value=2.8e-07  Score=78.21  Aligned_cols=174  Identities=7%  Similarity=-0.068  Sum_probs=106.1

Q ss_pred             CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-----------cCCcEEEEEcCCCcC
Q 021484           53 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-----------NDELVYLFEKNMGLG  121 (312)
Q Consensus        53 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-----------~d~~i~iwd~~~~~~  121 (312)
                      +.|.++|..+.+++..              +..+ ..+  .++++|+|+.+..+           .++.|.++|..+.  
T Consensus        99 ~~VsVID~~t~~vv~~--------------I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--  159 (426)
T 3c75_H           99 TQQFVIDGSTGRILGM--------------TDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--  159 (426)
T ss_dssp             EEEEEEETTTTEEEEE--------------EEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--
T ss_pred             CeEEEEECCCCEEEEE--------------EECC-CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--
Confidence            7999999999884322              2122 223  79999999855443           2568999999887  


Q ss_pred             CCCCcCCcccccCCCCCceEecc--cC---CceeeEEEEecCCCCEEEEecc--CceEEEEeccCCeeEEEeecCccceE
Q 021484          122 PSPLSLSPEDLQKREEPQVYSGH--RN---SQTVKGVNFFGPNDEYVMSGSD--CGHLFIWKKKGGKLVRLMVGDRHVVN  194 (312)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~v~~v~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~  194 (312)
                                    +.+..+...  ..   ......+.+ +|++++|+++..  ++.|.+.|+.+++.+..+.....   
T Consensus       160 --------------~vv~~I~v~g~~r~~~g~~P~~~~~-spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---  221 (426)
T 3c75_H          160 --------------LPIADIELPDAPRFLVGTYQWMNAL-TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---  221 (426)
T ss_dssp             --------------CEEEEEEETTCCCCCBSCCGGGSEE-CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---
T ss_pred             --------------cEEEEEECCCccccccCCCcceEEE-cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---
Confidence                          555555421  00   011456788 999999998864  57899999999999888864321   


Q ss_pred             EEEEcCCC-CeEEEEeCCCcEEEccCCCCCCC-----CCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          195 QLEPHPHI-PMFATCGIEKTVKLWAPMPTDFP-----PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       195 ~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                       ....|++ +.+++.+.||.+.+.++.+++..     .+......+.....+.+++..++..+..+.+.+.|+...
T Consensus       222 -~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~  296 (426)
T 3c75_H          222 -YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE  296 (426)
T ss_dssp             -EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred             -eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence             2223333 34555666777666666444332     111111111111123444455555556788888887543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.80  E-value=3.8e-07  Score=75.76  Aligned_cols=201  Identities=7%  Similarity=0.048  Sum_probs=112.2

Q ss_pred             eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEe---CCCeEEEEEccCCeecCCCCCCCCc---
Q 021484            2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG---SDEYARVYDIRKCHWYSPISSDTPV---   75 (312)
Q Consensus         2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~---   75 (312)
                      .+||+.+.+....+......     ..+...+..++++|++..++++..   .++.|.+||+.+++...........   
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~-----~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~  170 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPI-----TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE  170 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTT-----SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred             EEEECCCCeEEEEEECChhh-----cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence            45777665533333321110     013345789999986545666655   6889999999877654322110000   


Q ss_pred             -cccccc--ccc--cC------CCccEEEEEEccCCCeEEEe-c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCc--e
Q 021484           76 -DTFCPR--HLI--GK------NNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ--V  140 (312)
Q Consensus        76 -~~~~~~--~~~--~~------~~~~i~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~  140 (312)
                       ..+...  .+.  ..      -...+..|+|+|+|+.|..+ . ...++.++.......   .+.     ..+...  .
T Consensus       171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~---~~~-----~~~~~~~~~  242 (343)
T 2qe8_A          171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL---QLT-----DAELGSKIE  242 (343)
T ss_dssp             SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT---TCC-----HHHHHTTCE
T ss_pred             ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC---CCC-----hhhhhcceE
Confidence             000000  000  00      01346889999999866665 3 445666654211000   000     000000  1


Q ss_pred             EecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec-CccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021484          141 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWA  218 (312)
Q Consensus       141 ~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd  218 (312)
                      ..++...  ...+++ +++|+++++...++.|.+||..+++....... +...+.+++|.+++.++++.+..+.+.+|.
T Consensus       243 ~~g~~g~--pdgia~-d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          243 RYSEKPI--CDGISI-DKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EEEECCS--CSCEEE-CTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             ecccCCC--CceEEE-CCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            1223322  567888 89999999999999999999856764433332 234688999999988887776555444444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.79  E-value=3.6e-06  Score=67.14  Aligned_cols=196  Identities=8%  Similarity=-0.026  Sum_probs=116.3

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-cCC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDE  109 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~  109 (312)
                      .+..++|+|++..++++-..++.|..+++.....               ..+..........+++++++. ++++. ..+
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---------------~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~  101 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---------------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLD  101 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---------------EEEECTTCCCEEEEEEETTTTEEEEEETTTT
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---------------EEEEECCCCCccEEEEEecCCeEEEEECCCC
Confidence            4679999997646667777788999999875531               111111224678999999765 44444 478


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---CceEEEEeccCCeeEEEe
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~  186 (312)
                      .|.++++...                 ....+.... ......+++ ++++..|+.+..   .+.|..+++.. +....+
T Consensus       102 ~I~~~~~~g~-----------------~~~~~~~~~-~~~P~~i~v-d~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~  161 (267)
T 1npe_A          102 RIEVAKMDGT-----------------QRRVLFDTG-LVNPRGIVT-DPVRGNLYWTDWNRDNPKIETSHMDG-TNRRIL  161 (267)
T ss_dssp             EEEEEETTSC-----------------SCEEEECSS-CSSEEEEEE-ETTTTEEEEEECCSSSCEEEEEETTS-CCCEEE
T ss_pred             EEEEEEcCCC-----------------CEEEEEECC-CCCccEEEE-eeCCCEEEEEECCCCCcEEEEEecCC-CCcEEE
Confidence            9999998653                 222222111 122678998 886555544443   46888888763 333333


Q ss_pred             e-cCccceEEEEEcCCCCeE-EEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          187 V-GDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       187 ~-~~~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      . ........++++|++..| ++....+.|.++++.+.....+........... . .++.++++...++.|..++....
T Consensus       162 ~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~-~-d~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVT-S-YGKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEE-E-ETTEEEEEETTTTEEEEEETTTT
T ss_pred             EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEE-E-eCCEEEEEECCCCeEEEEeCCCC
Confidence            2 223457899999987765 444566899999987643211110000001111 1 13455666666677777775544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.78  E-value=1.4e-07  Score=80.10  Aligned_cols=252  Identities=8%  Similarity=-0.032  Sum_probs=137.5

Q ss_pred             eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEe----------CCCeEEEEEccCCeecCCCCC
Q 021484            2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWYSPISS   71 (312)
Q Consensus         2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~   71 (312)
                      .++|+.+.+....+...           ..+  .++++|++ +.++++.          .++.|.++|..+.+....+..
T Consensus       102 sVID~~t~~vv~~I~vG-----------~~P--gia~SpDg-k~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v  167 (426)
T 3c75_H          102 FVIDGSTGRILGMTDGG-----------FLP--HPVAAEDG-SFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL  167 (426)
T ss_dssp             EEEETTTTEEEEEEEEC-----------SSC--EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEECCCCEEEEEEECC-----------CCC--ceEECCCC-CEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence            46666665544444332           123  79999999 5555543          467899999998875432211


Q ss_pred             CCCcccccccccccCCCccEEEEEEccCCCeEEEe--c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCc
Q 021484           72 DTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ  148 (312)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (312)
                      +..      ...  ........++++|+|+++..+  . ++.|.+.|+.+.                +.+..+....   
T Consensus       168 ~g~------~r~--~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~----------------kvv~~I~v~g---  220 (426)
T 3c75_H          168 PDA------PRF--LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK----------------TFDRMLDVPD---  220 (426)
T ss_dssp             TTC------CCC--CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT----------------EEEEEEECCS---
T ss_pred             CCc------ccc--ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC----------------eEEEEEEcCC---
Confidence            000      000  001223467999999976664  3 578999999887                5555554321   


Q ss_pred             eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE----eecCccce-EEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL----MVGDRHVV-NQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~v-~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                       . ...+ +.....+++.+.||.+.+.+..+++....    +.....++ ..+.+.+++..++..+..+.|.+.|..+..
T Consensus       221 -~-~~~~-p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~  297 (426)
T 3c75_H          221 -C-YHIF-PASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG  297 (426)
T ss_dssp             -E-EEEE-EEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred             -c-eeec-cCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc
Confidence             1 1111 22235556666788888888766655432    11111221 235678998887777788999999987654


Q ss_pred             CCCCCC------Chhhh------hhhhccCCCCceeE-Eec---------CCceEEEEEecccCcccee---------Ee
Q 021484          224 FPPLPD------NAEKI------MKANKQGREDHSRI-TLT---------PDVIMHVLRLQRRQTLAYR---------ER  272 (312)
Q Consensus       224 ~~~~~~------~~~~~------~~~~~~~~~~~~l~-s~~---------~d~~i~i~~~~~~~~~~~~---------~~  272 (312)
                      ......      .....      .....+++++..++ +..         .++.+.++|..+......+         .+
T Consensus       298 ~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~  377 (426)
T 3c75_H          298 ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINV  377 (426)
T ss_dssp             EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEE
T ss_pred             eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEE
Confidence            211100      00000      00112344444433 322         2457888888776544443         23


Q ss_pred             ecCCC-ccCCCC-CCCeEEEeecCCCC
Q 021484          273 RYNAA-DFESDE-EEGETYLLGFSDSD  297 (312)
Q Consensus       273 ~~~~~-~~~~~~-~~~~v~~~~~~~~~  297 (312)
                      .+++. .+.... .++.|.++|.....
T Consensus       378 spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          378 SQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             CCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             ccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            44443 333322 45667777765554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.66  E-value=1.1e-08  Score=85.99  Aligned_cols=140  Identities=9%  Similarity=0.010  Sum_probs=75.4

Q ss_pred             CCeEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc
Q 021484          100 SELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK  178 (312)
Q Consensus       100 ~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~  178 (312)
                      +..+++ +.|+.|+.||..++                +.+..+..  ..  +.+..+ ..++..+++++.||.|+.||..
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG----------------~~~W~~~~--~~--~~s~p~-~~~g~~~v~~s~dg~l~a~d~~   67 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTG----------------SIKWTLKE--DP--VLQVPT-HVEEPAFLPDPNDGSLYTLGSK   67 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTC----------------CEEEEEEC--CC--SCCCC------CCEEECTTTCCEEEC---
T ss_pred             CCEEEEEcCCCEEEEEECCCC----------------CEEEEecC--CC--ceecce-EcCCCEEEEeCCCCEEEEEECC
Confidence            445555 56999999999988                66666665  22  444444 4567788888999999999999


Q ss_pred             CCeeEEEeecCcc-ceE-EEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCce
Q 021484          179 GGKLVRLMVGDRH-VVN-QLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVI  255 (312)
Q Consensus       179 ~~~~~~~~~~~~~-~v~-~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  255 (312)
                      +++.+..+..+.. .+. ...+. .+..+++++.|+.|+.||..+++. -.+..+. .    ...++++..++.++.++.
T Consensus        68 tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~----~~~~p~~~~v~~~~~dg~  141 (369)
T 2hz6_A           68 NNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-A----DSLSPSTSLLYLGRTEYT  141 (369)
T ss_dssp             --CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEE
T ss_pred             CCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-c----ccccccCCEEEEEecCCE
Confidence            9988766654322 111 11111 345677788899999999998874 2222221 1    112336678888899999


Q ss_pred             EEEEEecccCc
Q 021484          256 MHVLRLQRRQT  266 (312)
Q Consensus       256 i~i~~~~~~~~  266 (312)
                      ++.||..++..
T Consensus       142 v~a~d~~tG~~  152 (369)
T 2hz6_A          142 ITMYDTKTREL  152 (369)
T ss_dssp             EECCCSSSSSC
T ss_pred             EEEEECCCCCE
Confidence            99999877643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.66  E-value=4.9e-07  Score=75.41  Aligned_cols=70  Identities=6%  Similarity=-0.096  Sum_probs=55.5

Q ss_pred             EEEecCCCCEEEEecc---------CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEe-CCCcEEEccCCC
Q 021484          153 VNFFGPNDEYVMSGSD---------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCG-IEKTVKLWAPMP  221 (312)
Q Consensus       153 v~~~s~~~~~l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~t~~-~d~~i~iwd~~~  221 (312)
                      +++ +++++.++.+..         ++.+.++|+.+.+.+..+.... ....++|+|+++. +++.. .+++|.++|+.+
T Consensus       269 v~~-s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          269 VAK-LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEE-ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             eEE-cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            667 889888876543         2356699999999988887543 5789999999985 66666 599999999998


Q ss_pred             CCC
Q 021484          222 TDF  224 (312)
Q Consensus       222 ~~~  224 (312)
                      .+.
T Consensus       347 ~kv  349 (368)
T 1mda_H          347 DQD  349 (368)
T ss_dssp             CEE
T ss_pred             CcE
Confidence            864

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.63  E-value=6e-06  Score=64.62  Aligned_cols=152  Identities=13%  Similarity=0.127  Sum_probs=102.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE-ec
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YN  107 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~  107 (312)
                      -...+.|+ ++ .++.+.+.+|  .|+.+|+.++++.....              ......-..++.  .+. +.+. ..
T Consensus        44 ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~--------------l~~~~FgeGit~--~g~~ly~ltw~  105 (262)
T 3nol_A           44 FTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIE--------------LGKRYFGEGISD--WKDKIVGLTWK  105 (262)
T ss_dssp             EEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEE--------------CCTTCCEEEEEE--ETTEEEEEESS
T ss_pred             ccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEe--------------cCCccceeEEEE--eCCEEEEEEee
Confidence            35789998 55 6777777766  89999999998542211              111111123444  344 3333 35


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  187 (312)
                      ++.+.+||..+.                +.+..+.....   -..+++   +++.|+.+..++.|.++|..+.+.+..+.
T Consensus       106 ~~~v~v~D~~t~----------------~~~~ti~~~~e---G~glt~---dg~~L~~SdGs~~i~~iDp~T~~v~~~I~  163 (262)
T 3nol_A          106 NGLGFVWNIRNL----------------RQVRSFNYDGE---GWGLTH---NDQYLIMSDGTPVLRFLDPESLTPVRTIT  163 (262)
T ss_dssp             SSEEEEEETTTC----------------CEEEEEECSSC---CCCEEE---CSSCEEECCSSSEEEEECTTTCSEEEEEE
T ss_pred             CCEEEEEECccC----------------cEEEEEECCCC---ceEEec---CCCEEEEECCCCeEEEEcCCCCeEEEEEE
Confidence            999999999887                67777765332   234544   56777777778899999999999888775


Q ss_pred             cC--c---cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          188 GD--R---HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       188 ~~--~---~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      ..  .   ..++.+.|. +|..++..-.+..|.+.|++++++
T Consensus       164 V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V  204 (262)
T 3nol_A          164 VTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKV  204 (262)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBE
T ss_pred             eccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcE
Confidence            42  1   234567776 676666655788999999998874

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.61  E-value=4.4e-06  Score=73.01  Aligned_cols=188  Identities=10%  Similarity=0.019  Sum_probs=111.7

Q ss_pred             eeecccCccceeeEEecccccCCcCCCCccceEEEEE-c-CCCCcEEEEEe------------------CCCeEEEEEcc
Q 021484            2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI-D-PRNPNYFAVGG------------------SDEYARVYDIR   61 (312)
Q Consensus         2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~-p~~~~~l~~~~------------------~dg~i~iwd~~   61 (312)
                      .+.|+.+.+..+++.+.+.          .....+++ + |++ .++++++                  .++.+.+.|..
T Consensus       115 avIdl~t~~~~~ii~ip~g----------~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~  183 (595)
T 1fwx_A          115 ARVRCDVMKCDAILEIPNA----------KGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD  183 (595)
T ss_dssp             EEEETTTTEEEEEEECSSC----------CSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT
T ss_pred             EEEECCCceEeeEEeCCCC----------CCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccCceEEEEECC
Confidence            4667777776676655432          34778887 5 888 5665553                  34678889988


Q ss_pred             CCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec--C--------------CcEEEEEcCCCc-----
Q 021484           62 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--D--------------ELVYLFEKNMGL-----  120 (312)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--d--------------~~i~iwd~~~~~-----  120 (312)
                      +.++.              .++..+  .....++++|+|+++++++  .              ..|.++|.....     
T Consensus       184 t~~v~--------------~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~  247 (595)
T 1fwx_A          184 KWEVA--------------WQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  247 (595)
T ss_dssp             TTEEE--------------EEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             CCeEE--------------EEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence            87632              111111  1234577899998666643  2              225555543211     


Q ss_pred             C--CCCCcCCcccccC--CCC-CceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEEeccCCe------------e
Q 021484          121 G--PSPLSLSPEDLQK--REE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGK------------L  182 (312)
Q Consensus       121 ~--~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~~~~------------~  182 (312)
                      +  .....+.+-+..+  .+. +..+....   ...++.+ +|+|+++++++ .+.+|.++|+.+.+            .
T Consensus       248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~---~PhGv~~-sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v  323 (595)
T 1fwx_A          248 GDYQELNGVKVVDGRKEASSLFTRYIPIAN---NPHGCNM-APDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  323 (595)
T ss_dssp             TCSEEETTEEEEECSGGGCCSSEEEEEEES---SCCCEEE-CTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred             CCeeEECcEEEEeCcccCCceeEEEEecCC---CceEEEE-cCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence            0  0000111111222  122 23333222   2678888 99999876655 68899999998653            3


Q ss_pred             EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                      +..+... .....++|+|+|...++.-.|++|.+||+..
T Consensus       324 ~~~v~vG-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          324 VAEPELG-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EECCBCC-SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EEEcCCC-CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            3444322 4568899999994456666899999999876

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.60  E-value=3.1e-06  Score=66.96  Aligned_cols=152  Identities=12%  Similarity=0.073  Sum_probs=102.2

Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEE
Q 021484           35 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYL  113 (312)
Q Consensus        35 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~i  113 (312)
                      .+++.  +.+++++.-.++.+.++|..+.++...              +..+...   ...++++|+.+..+ .++.|.+
T Consensus        70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~--------------i~~g~~~---g~glt~Dg~~l~vs~gs~~l~v  130 (266)
T 2iwa_A           70 GLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKN--------------FTHQMKD---GWGLATDGKILYGSDGTSILYE  130 (266)
T ss_dssp             EEEEE--TTEEEEEETTCSEEEEEETTTTEEEEE--------------EECCSSS---CCEEEECSSSEEEECSSSEEEE
T ss_pred             EEEEe--CCEEEEEEecCCEEEEEECCCCcEEEE--------------EECCCCC---eEEEEECCCEEEEECCCCeEEE
Confidence            45554  335666677889999999998874322              1111011   12355678755554 5889999


Q ss_pred             EEcCCCcCCCCCcCCcccccCCCCCceEecccCCc---eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCc
Q 021484          114 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  190 (312)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  190 (312)
                      +|..+.                +....+.......   .+..+.| . ++...+....++.|.+.|..+++.+..+....
T Consensus       131 iD~~t~----------------~v~~~I~Vg~~~~p~~~~nele~-~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g  192 (266)
T 2iwa_A          131 IDPHTF----------------KLIKKHNVKYNGHRVIRLNELEY-I-NGEVWANIWQTDCIARISAKDGTLLGWILLPN  192 (266)
T ss_dssp             ECTTTC----------------CEEEEEECEETTEECCCEEEEEE-E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHH
T ss_pred             EECCCC----------------cEEEEEEECCCCcccccceeEEE-E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCC
Confidence            999876                5555554322111   2567888 5 67666666678999999999999988886321


Q ss_pred             -------------cceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC
Q 021484          191 -------------HVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       191 -------------~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~  223 (312)
                                   ...+.++|+|+++. ++++.....|.+.++....
T Consensus       193 ~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          193 LRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             HHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             cccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence                         24589999999876 6666678888888876653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.57  E-value=1.8e-05  Score=63.06  Aligned_cols=157  Identities=10%  Similarity=-0.016  Sum_probs=92.5

Q ss_pred             ccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCC-EEEE
Q 021484           89 IHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMS  165 (312)
Q Consensus        89 ~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~-~l~~  165 (312)
                      ..+..++|++++. ++++. ..+.|..+++.+.                .....+.....  ....+++ ++++. ..++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~----------------~~~~~~~~~~~--~p~~ia~-d~~~~~lyv~   96 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG----------------EPTTIIRQDLG--SPEGIAL-DHLGRTIFWT   96 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSC----------------CCEEEECTTCC--CEEEEEE-ETTTTEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCC----------------CcEEEEECCCC--CccEEEE-EecCCeEEEE
Confidence            4577999999765 44444 4889999998764                22222222212  2788998 77654 4455


Q ss_pred             eccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEccCCCCCCCCCCCChhhhhhhhccCC
Q 021484          166 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR  242 (312)
Q Consensus       166 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  242 (312)
                      -...+.|.++++..................++++|++..|..+..   .+.|..+++.......+....-....-..+.+
T Consensus        97 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~  176 (267)
T 1npe_A           97 DSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA  176 (267)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET
T ss_pred             ECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcC
Confidence            566789999998744322222222246789999997665544443   36888888765433221100000111122444


Q ss_pred             C-CceeEEecCCceEEEEEeccc
Q 021484          243 E-DHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       243 ~-~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      + +.+.++-...+.|.++++...
T Consensus       177 ~~~~lyv~d~~~~~I~~~~~~g~  199 (267)
T 1npe_A          177 FSSQLCWVDAGTHRAECLNPAQP  199 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEETTEE
T ss_pred             CCCEEEEEECCCCEEEEEecCCC
Confidence            3 456677777788888887643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.56  E-value=7.5e-06  Score=64.14  Aligned_cols=153  Identities=14%  Similarity=0.120  Sum_probs=104.3

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV  111 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i  111 (312)
                      -...+.|+. + .++.+.+.+|.|+.+|+.+++....              ++.. ...-..+++..+.-++++..++.+
T Consensus        56 ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~--------------~l~~-~~FgeGit~~g~~Ly~ltw~~~~v  118 (268)
T 3nok_A           56 FTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWM--------------ERLG-NIFAEGLASDGERLYQLTWTEGLL  118 (268)
T ss_dssp             CEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEE--------------EECT-TCCEEEEEECSSCEEEEESSSCEE
T ss_pred             ccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeE--------------ECCC-CcceeEEEEeCCEEEEEEccCCEE
Confidence            357888874 4 7888888899999999999984321              1111 111123444432123333469999


Q ss_pred             EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec--C
Q 021484          112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--D  189 (312)
Q Consensus       112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~  189 (312)
                      .+||..+.                +.+..+.....   -..+++   +++.|+.+..++.|.++|..+.+.+..+..  +
T Consensus       119 ~V~D~~Tl----------------~~~~ti~~~~e---GwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~  176 (268)
T 3nok_A          119 FTWSGMPP----------------QRERTTRYSGE---GWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR  176 (268)
T ss_dssp             EEEETTTT----------------EEEEEEECSSC---CCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred             EEEECCcC----------------cEEEEEeCCCc---eeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC
Confidence            99999887                67777765332   245554   567777777799999999999998887753  2


Q ss_pred             cc---ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          190 RH---VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       190 ~~---~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      ..   .++.+.|. +|..++..-.+..|.+.|++++++
T Consensus       177 g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V  213 (268)
T 3nok_A          177 GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTV  213 (268)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBE
T ss_pred             CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcE
Confidence            22   45677777 666666555788999999999874

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.54  E-value=4.1e-06  Score=65.58  Aligned_cols=161  Identities=11%  Similarity=0.118  Sum_probs=100.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+.+|+.+.+....+.+.            .........+.+.+++...-.++.+.+||..+.+++..         +. 
T Consensus        67 v~~vD~~Tgkv~~~~~l~------------~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t---------i~-  124 (262)
T 3nol_A           67 IRKVDIESGKTLQQIELG------------KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS---------FN-  124 (262)
T ss_dssp             EEEECTTTCCEEEEEECC------------TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE---------EE-
T ss_pred             EEEEECCCCcEEEEEecC------------CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE---------EE-
Confidence            456777776644444331            12223222233435666666789999999998874322         11 


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCce---eeEEEEe
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT---VKGVNFF  156 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~v~~~  156 (312)
                          ...    ....++++++.|+.+ .++.|.++|..+.                +....+.......+   +..+.| 
T Consensus       125 ----~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~----------------~v~~~I~V~~~g~~~~~lNELe~-  179 (262)
T 3nol_A          125 ----YDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESL----------------TPVRTITVTAHGEELPELNELEW-  179 (262)
T ss_dssp             ----CSS----CCCCEEECSSCEEECCSSSEEEEECTTTC----------------SEEEEEECEETTEECCCEEEEEE-
T ss_pred             ----CCC----CceEEecCCCEEEEECCCCeEEEEcCCCC----------------eEEEEEEeccCCccccccceeEE-
Confidence                111    112334567755554 4788999999876                55555554322122   455777 


Q ss_pred             cCCCCEEEEeccCceEEEEeccCCeeEEEeecC------------ccceEEEEEcCCCCeEEEEe
Q 021484          157 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD------------RHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       157 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------------~~~v~~~~~~p~~~~l~t~~  209 (312)
                      . +|+..+..-.+..|.+.|..+++.+..+...            ....+.++|+|+++.|...+
T Consensus       180 ~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          180 V-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             E-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             E-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            4 6776666667889999999999998887642            12458899999988866666

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.46  E-value=1.3e-05  Score=73.58  Aligned_cols=193  Identities=10%  Similarity=0.096  Sum_probs=106.4

Q ss_pred             ceEEEEEc-CCCCcEEEEE-eCCC----eEEEEEccCC-eecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021484           32 RLNAIVID-PRNPNYFAVG-GSDE----YARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  104 (312)
Q Consensus        32 ~v~~~~~~-p~~~~~l~~~-~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  104 (312)
                      .+...+|| |+| ++||-+ ..+|    .|+++|+.++ +..             ...+    ......++|+|+|+.|+
T Consensus       175 ~~~~~~~S~PDG-~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-------------~~~~----~~~~~~~~WspDg~~l~  236 (751)
T 2xe4_A          175 DVMEVKPAPPEH-DLVAFSVDMSGNEVYTIEFKRISDPSQTI-------------ADKV----SGTNGEIVWGPDHTSLF  236 (751)
T ss_dssp             EEEEEEECTTTT-CEEEEEEESSSSSCEEEEEEETTCTTCCC-------------CCCE----EEECSCCEECSSTTEEE
T ss_pred             EEeeeEecCCCC-CEEEEEEeCCCCceEEEEEEECCCCCEeC-------------Cccc----cCceeeEEEecCCCEEE
Confidence            67889999 999 555543 3333    5999999987 521             0001    11123678999998555


Q ss_pred             Ee-cC-----CcEEEEEcCCCcCCCCCcCCcccccCCCC--CceEecccCCceeeEEEEecCCCCEEEEec---cCceEE
Q 021484          105 SY-ND-----ELVYLFEKNMGLGPSPLSLSPEDLQKREE--PQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLF  173 (312)
Q Consensus       105 s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~---~dg~v~  173 (312)
                      .. .+     ..|+++++.++                ..  ...+..... .....+.| +|+|++|+...   ....|+
T Consensus       237 y~~~d~~~~~~~v~~~~lgt~----------------~~~~~lv~~~~~~-~~~~~~~~-SpDg~~l~~~~~~~~~~~l~  298 (751)
T 2xe4_A          237 YVTKDETLRENKVWRHVMGKL----------------QSEDVCLYEEHNP-LFSAFMYK-AADTNTLCIGSQSPETAEVH  298 (751)
T ss_dssp             EEEECTTCCEEEEEEEETTSC----------------GGGCEEEEECCCT-TCEEEEEE-CTTSSEEEEEEECSSCEEEE
T ss_pred             EEEECCCCCCCEEEEEECCCC----------------chhcEEEEecCCC-ceEEEEEE-CCCCCEEEEEecCCCCceEE
Confidence            53 33     25888888764                21  122332211 23567888 99999887655   345788


Q ss_pred             EEeccCC--ee-EEEe-ecCccceEEEEEcCCCCeEEEEeCC--C--cEEEccCCC-CCCCC-CCCChhh-hhhhhccCC
Q 021484          174 IWKKKGG--KL-VRLM-VGDRHVVNQLEPHPHIPMFATCGIE--K--TVKLWAPMP-TDFPP-LPDNAEK-IMKANKQGR  242 (312)
Q Consensus       174 iwd~~~~--~~-~~~~-~~~~~~v~~~~~~p~~~~l~t~~~d--~--~i~iwd~~~-~~~~~-~~~~~~~-~~~~~~~~~  242 (312)
                      ++|+.++  +. +..+ ........++.|+..+.+++....+  +  .|..+++.+ ..... +..+... .+....+ .
T Consensus       299 ~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~-~  377 (751)
T 2xe4_A          299 LLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV-R  377 (751)
T ss_dssp             EEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE-C
T ss_pred             EEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE-E
Confidence            8998865  23 1333 3334455666655444444454443  3  566667664 33333 2222221 1111111 1


Q ss_pred             CCceeEEecCCceEEEEEe
Q 021484          243 EDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       243 ~~~~l~s~~~d~~i~i~~~  261 (312)
                      .+.++++...++..+++-+
T Consensus       378 ~~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          378 SNYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             SSEEEEEEEETTEEEEEEE
T ss_pred             CCEEEEEEEeCCEEEEEEE
Confidence            3456667777776555543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.46  E-value=0.0002  Score=58.57  Aligned_cols=196  Identities=8%  Similarity=-0.044  Sum_probs=111.9

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-cCC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDE  109 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~  109 (312)
                      .+.+++|++.+..++.+-..++.|..+++......      .     ....++.........+++.+.+. ++++- ..+
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~------~-----~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~   99 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------S-----SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG   99 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC------c-----ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCC
Confidence            46799999876467777777899999998752100      0     00111111123456888987554 55553 588


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceE-ecccCCceeeEEEEecCCCCEEEEecc-C-ceEEEEeccCCeeEEEe
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGPNDEYVMSGSD-C-GHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~s~~~~~l~~~~~-d-g~v~iwd~~~~~~~~~~  186 (312)
                      .|.++++...                 ....+ .....  ....+++ +|.+..|+.+.. . +.|...++. ++....+
T Consensus       100 ~I~~~~~~g~-----------------~~~~~~~~~~~--~P~~iav-dp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~  158 (316)
T 1ijq_A          100 TVSVADTKGV-----------------KRKTLFRENGS--KPRAIVV-DPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL  158 (316)
T ss_dssp             EEEEEETTSS-----------------SEEEEEECTTC--CEEEEEE-ETTTTEEEEEECSSSCEEEEEETT-SCCEEEE
T ss_pred             EEEEEeCCCC-----------------ceEEEEECCCC--CcceEEe-CCCCCEEEEEccCCCCeEEEEcCC-CCCeEEE
Confidence            9999998753                 22222 22222  2688998 776665544433 3 788888886 4433333


Q ss_pred             e-cCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCCCCCCCCCC---ChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          187 V-GDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPLPD---NAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       187 ~-~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      . ..-.....++++|++..|..+ ...+.|..+++.+.....+..   ......... . .++.++++-...+.|..++.
T Consensus       159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~gia-v-~~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA-V-FEDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEE-E-ETTEEEEEETTTTEEEEEET
T ss_pred             EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEE-E-ECCEEEEEECCCCeEEEEeC
Confidence            2 233467899999987765554 466799999987644322211   001111111 1 13456666666677766664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.46  E-value=6.6e-05  Score=58.23  Aligned_cols=154  Identities=8%  Similarity=0.034  Sum_probs=101.4

Q ss_pred             cceEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN  107 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~  107 (312)
                      .-...+.|++ + .++.+.+.+  ..|+.+|+.++++.....            + .. ...--.++... +++... ..
T Consensus        21 ~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~------------l-~~-~~fgeGi~~~~-~~ly~ltw~   83 (243)
T 3mbr_X           21 AFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAE------------V-PP-PYFGAGIVAWR-DRLIQLTWR   83 (243)
T ss_dssp             CCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEE------------C-CT-TCCEEEEEEET-TEEEEEESS
T ss_pred             cccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEe------------C-CC-CcceeEEEEeC-CEEEEEEee
Confidence            4577999987 4 677776665  489999999998542211            0 11 11112334332 233333 36


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  187 (312)
                      ++.+.+||..+.                +.+.++.....   -..+++   +++.|+.+..++.|.++|..+.+.+..+.
T Consensus        84 ~~~v~v~D~~tl----------------~~~~ti~~~~~---Gwglt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~  141 (243)
T 3mbr_X           84 NHEGFVYDLATL----------------TPRARFRYPGE---GWALTS---DDSHLYMSDGTAVIRKLDPDTLQQVGSIK  141 (243)
T ss_dssp             SSEEEEEETTTT----------------EEEEEEECSSC---CCEEEE---CSSCEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             CCEEEEEECCcC----------------cEEEEEeCCCC---ceEEee---CCCEEEEECCCCeEEEEeCCCCeEEEEEE
Confidence            999999999887                67777765432   245554   56666666678999999999999888776


Q ss_pred             cCc-----cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          188 GDR-----HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       188 ~~~-----~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      ...     ..++.+.|. +|+.++..-.+..|.+.|++++++
T Consensus       142 V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V  182 (243)
T 3mbr_X          142 VTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKV  182 (243)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBE
T ss_pred             EccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCE
Confidence            422     245667765 666665555678999999998864

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.44  E-value=1.9e-05  Score=66.16  Aligned_cols=224  Identities=10%  Similarity=0.046  Sum_probs=119.6

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS  123 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~  123 (312)
                      ..+++++.++.|..+|..+++.............      .......+.......++.+++.+.++.|+.+|..++    
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG----  123 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW------FSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDG----  123 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---C------CSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTC----
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCcccccc------ccccCcccccCceEeCCEEEEEcCCCEEEEEECCCC----
Confidence            4677788889999999998875432211100000      000012232222223455666667999999999887    


Q ss_pred             CCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccce-----EEEEE
Q 021484          124 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV-----NQLEP  198 (312)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~~~~  198 (312)
                                  +.+..+......  ......   .+..++.++.++.|..+|..+++.+-.........     .....
T Consensus       124 ------------~~~W~~~~~~~~--~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~  186 (376)
T 3q7m_A          124 ------------TVAWQTKVAGEA--LSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT  186 (376)
T ss_dssp             ------------CEEEEEECSSCC--CSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE
T ss_pred             ------------CEEEEEeCCCce--EcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE
Confidence                        555444433211  222222   24577888899999999999999877665432111     11222


Q ss_pred             cCCCCeEEEEeCCCcEEEccCCCCCCC---CCCCChhh--h--hhhhccCC--CCceeEEecCCceEEEEEecccCccce
Q 021484          199 HPHIPMFATCGIEKTVKLWAPMPTDFP---PLPDNAEK--I--MKANKQGR--EDHSRITLTPDVIMHVLRLQRRQTLAY  269 (312)
Q Consensus       199 ~p~~~~l~t~~~d~~i~iwd~~~~~~~---~~~~~~~~--~--~~~~~~~~--~~~~l~s~~~d~~i~i~~~~~~~~~~~  269 (312)
                        .+..++.++.++.|..+|..+++..   ........  .  +......+  .+..++.++.++.+..+|..+.... |
T Consensus       187 --~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~-w  263 (376)
T 3q7m_A          187 --AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM-W  263 (376)
T ss_dssp             --ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE-E
T ss_pred             --ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE-e
Confidence              2456777788999999999877631   11100000  0  00000111  2456667777888888887655322 2


Q ss_pred             eE-------eecCCCccCCCCCCCeEEEeecCCCC
Q 021484          270 RE-------RRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       270 ~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      ..       .......+.....++.++.+|..++.
T Consensus       264 ~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          264 KRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             EECCCCEEEEEEETTEEEEEETTCCEEEEETTTCC
T ss_pred             eccCCCCCCceEECCEEEEEcCCCeEEEEECCCCc
Confidence            21       11112222223344567777766554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.42  E-value=7.6e-06  Score=74.37  Aligned_cols=196  Identities=11%  Similarity=0.089  Sum_probs=113.0

Q ss_pred             CCeEEEEEccCCeecCCCCC--CCCccccccccc------cc--------CCCccEEEEEEccCCCeEEEe-cCC-----
Q 021484           52 DEYARVYDIRKCHWYSPISS--DTPVDTFCPRHL------IG--------KNNIHITGLAYSNTSELLISY-NDE-----  109 (312)
Q Consensus        52 dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~------~~--------~~~~~i~~~~~~~~~~~l~s~-~d~-----  109 (312)
                      ++.|+.||..+++++.....  ..+...+....+      ..        ++......++++|++.+++.+ .++     
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            78999999999986643321  011100000000      00        111112357888887766665 454     


Q ss_pred             --------------cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC-------ceeeEEEEecCCCC---EEEE
Q 021484          110 --------------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-------QTVKGVNFFGPNDE---YVMS  165 (312)
Q Consensus       110 --------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~v~~~s~~~~---~l~~  165 (312)
                                    .|..+|..++                +.+..++.....       ..+.-... ..+|+   .++.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG----------------~~~W~~~~~~~d~wd~~~~~~~~l~d~-~~~G~~~~~v~~  324 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTG----------------EYVWHYQTTPGDAWDYTATQHMILAEL-PIDGKPRKVLMQ  324 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTC----------------CEEEEEESSTTCCSCCCCCSCEEEEEE-EETTEEEEEEEE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCC----------------ceeEeeecCCcccccccCCCCcEEEee-ccCCcEEEEEEE
Confidence                          3999999988                565555432110       01111121 22454   7889


Q ss_pred             eccCceEEEEeccCCeeEEEeecCcc---------------------------------------ceEEEEEcCCCCeEE
Q 021484          166 GSDCGHLFIWKKKGGKLVRLMVGDRH---------------------------------------VVNQLEPHPHIPMFA  206 (312)
Q Consensus       166 ~~~dg~v~iwd~~~~~~~~~~~~~~~---------------------------------------~v~~~~~~p~~~~l~  206 (312)
                      ++.+|.++++|..+|+.+........                                       .-..++++|+..+++
T Consensus       325 ~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~y  404 (689)
T 1yiq_A          325 APKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVY  404 (689)
T ss_dssp             CCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEE
T ss_pred             ECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEE
Confidence            99999999999999998744321100                                       011267888888766


Q ss_pred             EEeC---------------------------------------------CCcEEEccCCCCCCC-CCCCChhhhhhhhcc
Q 021484          207 TCGI---------------------------------------------EKTVKLWAPMPTDFP-PLPDNAEKIMKANKQ  240 (312)
Q Consensus       207 t~~~---------------------------------------------d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~  240 (312)
                      +...                                             +|.|+.||+.++++. .+. +...... ...
T Consensus       405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~-g~~  482 (689)
T 1yiq_A          405 IPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP-YVTIFNG-GTL  482 (689)
T ss_dssp             EEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE-ESSSCCC-CEE
T ss_pred             EeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc-CCCCccC-ccc
Confidence            6532                                             377999999887631 111 1111111 112


Q ss_pred             CCCCceeEEecCCceEEEEEecccCc
Q 021484          241 GREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       241 ~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      ...+.+++.++.|+.++.||.+++..
T Consensus       483 ~tagglvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          483 STAGNLVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             eECCCEEEEECCCCcEEEEECCCCcc
Confidence            33567888999999999999877643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.41  E-value=1.4e-05  Score=62.65  Aligned_cols=158  Identities=10%  Similarity=0.032  Sum_probs=100.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceE--EEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLN--AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   78 (312)
                      |+.+|+.+.+....+ ...            ...  .+++.  +.+++...-.++.+.+||..+.+++..+         
T Consensus        77 v~~iD~~Tgkv~~~~-l~~------------~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti---------  132 (268)
T 3nok_A           77 LRQLSLESAQPVWME-RLG------------NIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT---------  132 (268)
T ss_dssp             EEECCSSCSSCSEEE-ECT------------TCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE---------
T ss_pred             EEEEECCCCcEEeEE-CCC------------CcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE---------
Confidence            456777776654444 321            122  34444  4357777778999999999998853221         


Q ss_pred             cccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCc---eeeEEE
Q 021484           79 CPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVN  154 (312)
Q Consensus        79 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~  154 (312)
                      .     .. .. -..+  .++++.|+.+ .++.|.++|..+.                +....+.......   .+..+.
T Consensus       133 ~-----~~-~e-GwGL--t~Dg~~L~vSdGs~~l~~iDp~T~----------------~v~~~I~V~~~g~~v~~lNeLe  187 (268)
T 3nok_A          133 R-----YS-GE-GWGL--CYWNGKLVRSDGGTMLTFHEPDGF----------------ALVGAVQVKLRGQPVELINELE  187 (268)
T ss_dssp             E-----CS-SC-CCCE--EEETTEEEEECSSSEEEEECTTTC----------------CEEEEEECEETTEECCCEEEEE
T ss_pred             e-----CC-Cc-eeEE--ecCCCEEEEECCCCEEEEEcCCCC----------------eEEEEEEeCCCCcccccccccE
Confidence            1     11 11 1233  3567766665 5889999999876                5555555332222   256677


Q ss_pred             EecCCCCEEEEeccCceEEEEeccCCeeEEEeecC-------------ccceEEEEEcCCCCeEEEEe
Q 021484          155 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-------------RHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       155 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~~l~t~~  209 (312)
                      | . +|+..+..-.+..|.+.|..+++.+..+...             ....+.++|+|+++.|+..+
T Consensus       188 ~-~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          188 C-A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             E-E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             E-e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            7 4 6766666667889999999999998877632             12568899999877655554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.40  E-value=8e-05  Score=60.99  Aligned_cols=170  Identities=12%  Similarity=0.077  Sum_probs=101.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccc--cccc---ccccCCCccEEEEEEcc-CCCeEEE
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT--FCPR---HLIGKNNIHITGLAYSN-TSELLIS  105 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~i~~~~~~~-~~~~l~s  105 (312)
                      ...+++|++++ +++.++..++.|..|+..+++...... ......  .+..   .........+..+++.+ +++++++
T Consensus        20 ~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFVDFAY-ASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV   97 (322)
T ss_dssp             CCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEEEEEE-SCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred             CceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceEEEec-ccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence            35678899987 777788889999999987654210000 000000  0000   00000123578899997 7776666


Q ss_pred             ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC---CceeeEEEEecC-CCCEEEEecc-------------
Q 021484          106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---SQTVKGVNFFGP-NDEYVMSGSD-------------  168 (312)
Q Consensus       106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~~~s~-~~~~l~~~~~-------------  168 (312)
                      ...+.|..+|..++                 ....+.....   ......+++ .+ +|++.++-..             
T Consensus        98 d~~~~i~~~d~~~g-----------------~~~~~~~~~~~~~~~~p~~i~~-d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           98 DCYYHLSVVGSEGG-----------------HATQLATSVDGVPFKWLYAVTV-DQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             ETTTEEEEECTTCE-----------------ECEEEESEETTEECSCEEEEEE-CTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             ECCCCEEEEeCCCC-----------------EEEEecccCCCCcccccceEEE-ecCCCEEEEECCcccccccccceehc
Confidence            55555888887654                 1222221110   112678888 88 8887766432             


Q ss_pred             ----CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCCC
Q 021484          169 ----CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPT  222 (312)
Q Consensus       169 ----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~  222 (312)
                          ++.|..+|..+++...... .......++++|+++.|..+ ...+.|..|++.+.
T Consensus       160 ~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~  217 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP  217 (322)
T ss_dssp             HTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred             ccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence                4789999987776533222 12345679999999865544 56689999998764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.40  E-value=8.5e-06  Score=66.81  Aligned_cols=174  Identities=10%  Similarity=0.090  Sum_probs=102.5

Q ss_pred             EEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCC
Q 021484           45 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSP  124 (312)
Q Consensus        45 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~  124 (312)
                      .+..++.++.|..+|.. ++....              . ..+...+.++...+++.+++.+.++.|..+|.. +     
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~--------------~-~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g-----  166 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWR--------------F-KTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-G-----  166 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEE--------------E-ECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-S-----
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEE--------------E-cCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-C-----
Confidence            56666677777777776 442110              0 111223445566667777776678889999887 4     


Q ss_pred             CcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe
Q 021484          125 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM  204 (312)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~  204 (312)
                                 +....+.....  .+.++.. .+++.+++ ++  +.|..+| .+++.+..+......+.++...+++.+
T Consensus       167 -----------~~~~~~~~~~~--~~~~~~~-d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l  228 (330)
T 3hxj_A          167 -----------TEKWRFKTNDA--ITSAASI-GKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI  228 (330)
T ss_dssp             -----------CEEEEEECSSC--CCSCCEE-CTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE
T ss_pred             -----------CEeEEEecCCC--ceeeeEE-cCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE
Confidence                       44444443332  2666766 66777554 44  8899999 677777666655566788888888765


Q ss_pred             EEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          205 FATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       205 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .+ ++.++.|..++..+.....+... .......... .+..+..++.++.+..++.
T Consensus       229 ~v-~t~~~gl~~~~~~g~~~~~~~~~-~~~~~~~~~~-~~g~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          229 YV-TSLDGHLYAINPDGTEKWRFKTG-KRIESSPVIG-NTDTIYFGSYDGHLYAINP  282 (330)
T ss_dssp             EE-EETTTEEEEECTTSCEEEEEECS-SCCCSCCEEC-TTSCEEEECTTCEEEEECT
T ss_pred             EE-EcCCCeEEEECCCCCEeEEeeCC-CCccccceEc-CCCeEEEecCCCCEEEECC
Confidence            44 55677888888654433222111 1111111112 2345666777777777773

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.39  E-value=0.00012  Score=61.19  Aligned_cols=187  Identities=8%  Similarity=-0.027  Sum_probs=107.0

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS  123 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~  123 (312)
                      ..++.++.++.|..+|..+++.........+....      .....+    ... ++.+++...++.+..+|..++    
T Consensus       144 ~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~------~~~~~~----~~~-~~~v~~g~~~g~l~~~d~~tG----  208 (376)
T 3q7m_A          144 GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL------RGESAP----TTA-FGAAVVGGDNGRVSAVLMEQG----  208 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC-----------CCCCCC----EEE-TTEEEECCTTTEEEEEETTTC----
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee------cCCCCc----EEE-CCEEEEEcCCCEEEEEECCCC----
Confidence            46777888999999999988754322211111000      001111    111 344444446899999999877    


Q ss_pred             CCcCCcccccCCCCCceEecccCCc-----e---e-eEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE
Q 021484          124 PLSLSPEDLQKREEPQVYSGHRNSQ-----T---V-KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN  194 (312)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~---v-~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  194 (312)
                                  +.+..........     .   + .....   .+..++.++.++.+..+|..+++.+.....  ....
T Consensus       209 ------------~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~  271 (376)
T 3q7m_A          209 ------------QMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVN  271 (376)
T ss_dssp             ------------CEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEE
T ss_pred             ------------cEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCC
Confidence                        4443333211000     0   0 11111   256777888899999999999987765542  2334


Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEccCCCCCCC-CCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484          195 QLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       195 ~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      .+..  .+..+..++.++.|..+|..+++.. ............  ....+..++.++.++.+..+|..++..
T Consensus       272 ~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~~~~l~v~~~~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          272 DFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTS--PVLYNGNLVVGDSEGYLHWINVEDGRF  340 (376)
T ss_dssp             EEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCC--CEEETTEEEEECTTSEEEEEETTTCCE
T ss_pred             CceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccC--CEEECCEEEEEeCCCeEEEEECCCCcE
Confidence            4444  4567777788999999999887631 111000111000  011345788888899999999776643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.39  E-value=6.2e-06  Score=74.79  Aligned_cols=54  Identities=9%  Similarity=0.004  Sum_probs=43.3

Q ss_pred             ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          170 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       170 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      |.|..||+.+++.+-.+... .++....+...+..++.++.|+.+++||.++++.
T Consensus       457 g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence            78999999999988777633 3444555667788888889999999999998874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.38  E-value=4.2e-05  Score=59.34  Aligned_cols=132  Identities=10%  Similarity=0.046  Sum_probs=87.3

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCc
Q 021484           42 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGL  120 (312)
Q Consensus        42 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~  120 (312)
                      +.+++...-.++.+.+||..+.+++..+         .     ....+  ..+  .++++.|..+ .++.|.++|..+. 
T Consensus        74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti---------~-----~~~~G--wgl--t~dg~~L~vSdgs~~l~~iDp~t~-  134 (243)
T 3mbr_X           74 RDRLIQLTWRNHEGFVYDLATLTPRARF---------R-----YPGEG--WAL--TSDDSHLYMSDGTAVIRKLDPDTL-  134 (243)
T ss_dssp             TTEEEEEESSSSEEEEEETTTTEEEEEE---------E-----CSSCC--CEE--EECSSCEEEECSSSEEEEECTTTC-
T ss_pred             CCEEEEEEeeCCEEEEEECCcCcEEEEE---------e-----CCCCc--eEE--eeCCCEEEEECCCCeEEEEeCCCC-
Confidence            4366777778999999999998843221         1     11111  233  3566655444 5889999999876 


Q ss_pred             CCCCCcCCcccccCCCCCceEecccCCc---eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC--------
Q 021484          121 GPSPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD--------  189 (312)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--------  189 (312)
                                     +....+.......   .+..+.| . +|+..+..-.+..|.+.|..+++.+..+...        
T Consensus       135 ---------------~~~~~I~V~~~g~~~~~lNeLe~-~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~  197 (243)
T 3mbr_X          135 ---------------QQVGSIKVTAGGRPLDNLNELEW-V-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA  197 (243)
T ss_dssp             ---------------CEEEEEECEETTEECCCEEEEEE-E-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS
T ss_pred             ---------------eEEEEEEEccCCcccccceeeEE-e-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc
Confidence                           5555555332211   2556776 3 6766666657889999999999998887622        


Q ss_pred             ----c-cceEEEEEcCCCCeEEEEe
Q 021484          190 ----R-HVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       190 ----~-~~v~~~~~~p~~~~l~t~~  209 (312)
                          . ...+.++++|+++.|...+
T Consensus       198 ~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          198 LTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             ccCCcCCceEEEEEcCCCCEEEEEC
Confidence                1 2458899999887766555

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.36  E-value=0.00018  Score=56.55  Aligned_cols=164  Identities=7%  Similarity=0.045  Sum_probs=102.8

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      ...+..++|+|++..++++...++.|...|.. ++....+             .+.+ ....-.|++.+++.++++. .+
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i-------------~l~g-~~D~EGIa~~~~g~~~vs~E~~   90 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI-------------PLDF-VKDLETIEYIGDNQFVISDERD   90 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE-------------ECSS-CSSEEEEEECSTTEEEEEETTT
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE-------------ecCC-CCChHHeEEeCCCEEEEEECCC
Confidence            45799999999875677778889999999987 5532111             0111 2456788898888877776 48


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe----cccCCceeeEEEEecCCCCEEEEeccCceEEEEecc---CCe
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS----GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---GGK  181 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~---~~~  181 (312)
                      +.+.++++.....       .      .......    ......-...++| +|.++.|+++.+.....+|.+.   ...
T Consensus        91 ~~l~~~~v~~~~~-------i------~~~~~~~~~~~~~~~N~g~EGLA~-d~~~~~L~va~E~~p~~i~~~~g~~~~~  156 (255)
T 3qqz_A           91 YAIYVISLTPNSE-------V------KILKKIKIPLQESPTNCGFEGLAY-SRQDHTFWFFKEKNPIEVYKVNGLLSSN  156 (255)
T ss_dssp             TEEEEEEECTTCC-------E------EEEEEEECCCSSCCCSSCCEEEEE-ETTTTEEEEEEESSSEEEEEEESTTCSS
T ss_pred             CcEEEEEcCCCCe-------e------eeeeeeccccccccccCCcceEEE-eCCCCEEEEEECcCCceEEEEcccccCC
Confidence            8899998865410       0      0011111    0011122789999 8888777777766555555543   111


Q ss_pred             eEEEee-------cCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCC
Q 021484          182 LVRLMV-------GDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       182 ~~~~~~-------~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~  222 (312)
                      .+..+.       .+...+..++++|.... ++.....+.|..+|..+.
T Consensus       157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~  205 (255)
T 3qqz_A          157 ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE  205 (255)
T ss_dssp             CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred             ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC
Confidence            222221       12335688999997666 555557788888997765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.35  E-value=3.2e-05  Score=67.64  Aligned_cols=187  Identities=10%  Similarity=0.010  Sum_probs=116.9

Q ss_pred             CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE-c-cCCCeEEEec----------
Q 021484           40 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-S-NTSELLISYN----------  107 (312)
Q Consensus        40 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~l~s~~----------  107 (312)
                      ++|..++++...+..|.+.|+.+.++...+            .+  .....+..+++ + |+++++..+.          
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii------------~i--p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg  164 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAIL------------EI--PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG  164 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEE------------EC--SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEE------------eC--CCCCCCcceeeeecCCCcEEEEecccccccCCCC
Confidence            377445555566778999999998743210            11  12245678887 4 8888666652          


Q ss_pred             ---------CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc--------
Q 021484          108 ---------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG--------  170 (312)
Q Consensus       108 ---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg--------  170 (312)
                               ++.+.+.|..+.                +....+.-...   ...+++ +|+|+++++.+.+.        
T Consensus       165 ~~l~~~~~~~~~vtvID~~t~----------------~v~~qI~Vgg~---pd~~~~-spdGk~~~vt~~~se~~~~i~~  224 (595)
T 1fwx_A          165 TNMEDVANYVNVFTAVDADKW----------------EVAWQVLVSGN---LDNCDA-DYEGKWAFSTSYNSEKGMTLPE  224 (595)
T ss_dssp             SSTTCGGGEEEEEEEEETTTT----------------EEEEEEEESSC---CCCEEE-CSSSSEEEEEESCTTCCSSHHH
T ss_pred             cccccccccCceEEEEECCCC----------------eEEEEEEeCCC---ccceEE-CCCCCEEEEEecCcccCcchhh
Confidence                     456888888775                45555442221   345666 88999888877543        


Q ss_pred             ------------------------------eEEEEeccC--Cee-EEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEE
Q 021484          171 ------------------------------HLFIWKKKG--GKL-VRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKL  216 (312)
Q Consensus       171 ------------------------------~v~iwd~~~--~~~-~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~i  216 (312)
                                                    .|.+.|..+  ++. +..+... ....++.++|+|++++.++ .+.+|.+
T Consensus       225 ~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsV  303 (595)
T 1fwx_A          225 MTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTV  303 (595)
T ss_dssp             HTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEE
T ss_pred             ccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEE
Confidence                                          366667665  444 4444322 2446799999999965555 7889999


Q ss_pred             ccCCCCC------C-------CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          217 WAPMPTD------F-------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       217 wd~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      +|+.+.+      +       ..+... ... .-..+.+++...++.--++.+.+|++..
T Consensus       304 id~~~~~~~~~~~l~~~~~v~~~v~vG-~gP-~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          304 LDVTRFDAVFYENADPRSAVVAEPELG-LGP-LHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEGGGHHHHHHSCCCGGGGEEECCBCC-SCE-EEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EECcccccccccccCcccceEEEcCCC-CCc-ceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            9998542      1       111100 111 1122556676667788889999999876

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.35  E-value=1e-05  Score=73.42  Aligned_cols=197  Identities=10%  Similarity=0.097  Sum_probs=115.2

Q ss_pred             CCeEEEEEccCCeecCCCCCCCCcc--------------ccc--ccccc-cCCCccEEEEEEccCCCeEEEe-cCC----
Q 021484           52 DEYARVYDIRKCHWYSPISSDTPVD--------------TFC--PRHLI-GKNNIHITGLAYSNTSELLISY-NDE----  109 (312)
Q Consensus        52 dg~i~iwd~~~~~~~~~~~~~~~~~--------------~~~--~~~~~-~~~~~~i~~~~~~~~~~~l~s~-~d~----  109 (312)
                      ++.|+.+|..+++++.......+..              .+.  ..... .+.......++++|++.++..+ .++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            7999999999998764432211110              000  00000 0111222357888888766654 332    


Q ss_pred             ---------------cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC-------ceeeEEEEecCCC---CEEE
Q 021484          110 ---------------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-------QTVKGVNFFGPND---EYVM  164 (312)
Q Consensus       110 ---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~v~~~s~~~---~~l~  164 (312)
                                     .|..+|..++                +.+..++.....       ....-+.. ..+|   ..++
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG----------------~~~W~~~~~~~d~wd~~~~~~p~l~~~-~~dG~~~~~l~  331 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTG----------------KYKWHYQETPGDNWDYTSTQPMILADI-KIAGKPRKVIL  331 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTC----------------CEEEEEESSTTCCSCCCCCSCCEEEEE-EETTEEEEEEE
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCC----------------CEEEEEecCCCcccccccCCCcEEEec-ccCCcEeeEEE
Confidence                           4888898887                555555432110       00112222 3366   6889


Q ss_pred             EeccCceEEEEeccCCeeEEEeecCcc-----------ce------------------------EEEEEcCCCCeEEEEe
Q 021484          165 SGSDCGHLFIWKKKGGKLVRLMVGDRH-----------VV------------------------NQLEPHPHIPMFATCG  209 (312)
Q Consensus       165 ~~~~dg~v~iwd~~~~~~~~~~~~~~~-----------~v------------------------~~~~~~p~~~~l~t~~  209 (312)
                      .++.+|.|+++|..+|+.+..+.....           ++                        ..++++|+..++++..
T Consensus       332 ~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~  411 (677)
T 1kb0_A          332 HAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPA  411 (677)
T ss_dssp             ECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEE
T ss_pred             EECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeC
Confidence            999999999999999998876642210           01                        1468899888876654


Q ss_pred             C-------------------------------------------CCcEEEccCCCCCCC-CCCCChhhhhhhhccCCCCc
Q 021484          210 I-------------------------------------------EKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGREDH  245 (312)
Q Consensus       210 ~-------------------------------------------d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~  245 (312)
                      .                                           .+.|..||+.++++. .+. +...... ......+.
T Consensus       412 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~-g~~~~~g~  489 (677)
T 1kb0_A          412 QNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNG-GTLTTAGN  489 (677)
T ss_dssp             EECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCC-CEEEETTT
T ss_pred             hhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcC-cceEeCCC
Confidence            3                                           277999999887631 111 1111111 11223566


Q ss_pred             eeEEecCCceEEEEEecccCcc
Q 021484          246 SRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       246 ~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      .++.++.++.+++||..+...+
T Consensus       490 ~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          490 VVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             EEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEEECCCCcEEEEECCCCcee
Confidence            7888899999999998776443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.34  E-value=1.4e-05  Score=66.56  Aligned_cols=102  Identities=6%  Similarity=-0.198  Sum_probs=67.2

Q ss_pred             cEEEEEeCCC----eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-----------C
Q 021484           44 NYFAVGGSDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-----------D  108 (312)
Q Consensus        44 ~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-----------d  108 (312)
                      +.+++-..++    +|.+.|..+++.+              ..+..+. .+  .++++|+++.+..+.           +
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~--------------~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~   95 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTL--------------GHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEE--------------EEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             eEEEECCccCCccceEEEEECCCCeEE--------------EEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCC
Confidence            4445544445    8889999998843              2222232 23  699999998555542           6


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC-----CceeeEEEEecCCCCEEEEecc--CceEEE--EeccC
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-----SQTVKGVNFFGPNDEYVMSGSD--CGHLFI--WKKKG  179 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~v~~~s~~~~~l~~~~~--dg~v~i--wd~~~  179 (312)
                      +.|.+||+.+.                +.+..+.....     ......+++ +|+|++++++..  ...|.+  +|..+
T Consensus        96 ~~VsviD~~T~----------------~vv~~I~v~~~~~~~~g~~P~~ia~-SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H           96 DYVEVFDPVTF----------------LPIADIELPDAPRFSVGPRVHIIGN-CASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEEEECTTTC----------------CEEEEEEETTSCSCCBSCCTTSEEE-CTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CEEEEEECCCC----------------CEEEEEECCCccccccCCCcceEEE-cCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            78999999987                66666653300     011457888 899999888764  456777  77643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.34  E-value=0.00038  Score=57.76  Aligned_cols=191  Identities=8%  Similarity=-0.050  Sum_probs=111.3

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-cCC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDE  109 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~  109 (312)
                      .+..++|++.+..++.+-...+.|+.+++.....               ..+..........+++.+.+. ++.+- ..+
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~---------------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~  138 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---------------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTS  138 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCc---------------eEEEeCCCCCccEEEEecCCCeEEEEcCCCC
Confidence            4678999986646666666788899898876531               111111123456888987554 44553 578


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEE-EEeccC-ceEEEEeccCCeeEEEe
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYV-MSGSDC-GHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l-~~~~~d-g~v~iwd~~~~~~~~~~  186 (312)
                      .|.+.++...                 ....+. ....  ....+++ +|.+..| ++-... +.|..+++.... ...+
T Consensus       139 ~I~~~~~dG~-----------------~~~~l~~~~l~--~P~~iav-dp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~  197 (349)
T 3v64_C          139 RIEVANLDGA-----------------HRKVLLWQSLE--KPRAIAL-HPMEGTIYWTDWGNTPRIEASSMDGSG-RRII  197 (349)
T ss_dssp             EEEEEETTSC-----------------SCEEEECTTCS--CEEEEEE-ETTTTEEEEEECSSSCEEEEEETTSCS-CEES
T ss_pred             eEEEEcCCCC-----------------ceEEEEeCCCC--CcceEEE-ecCcCeEEEeccCCCCEEEEEeCCCCC-cEEE
Confidence            8999998754                 222222 2222  2688998 7755544 444445 789999887433 3333


Q ss_pred             -ecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCCCCCCCCC-CChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          187 -VGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       187 -~~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                       ...-...+.++++|++..|..+ ...+.|..+++.+.....+. .......... . .++.+.++-...+.|..++
T Consensus       198 ~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gia-v-~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          198 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAIT-V-FEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEE-E-ETTEEEEEETTTTEEEEEE
T ss_pred             EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEE-E-ECCEEEEecCCCCeEEEEE
Confidence             2233457899999877665444 46678999998764332211 1111111111 1 2345556665666666555

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.33  E-value=8.7e-05  Score=60.78  Aligned_cols=198  Identities=9%  Similarity=0.069  Sum_probs=109.9

Q ss_pred             ceEEEEEcC-CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEec--
Q 021484           32 RLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN--  107 (312)
Q Consensus        32 ~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~--  107 (312)
                      .+..+++.+ ++ +++++ ...+.|..+|..++...          .+.. ............+++.+ +|.+.++..  
T Consensus        81 ~p~gi~~~~~~g-~l~v~-d~~~~i~~~d~~~g~~~----------~~~~-~~~~~~~~~p~~i~~d~~~G~l~v~d~~~  147 (322)
T 2fp8_A           81 RTYDISYNLQNN-QLYIV-DCYYHLSVVGSEGGHAT----------QLAT-SVDGVPFKWLYAVTVDQRTGIVYFTDVST  147 (322)
T ss_dssp             CEEEEEEETTTT-EEEEE-ETTTEEEEECTTCEECE----------EEES-EETTEECSCEEEEEECTTTCCEEEEESCS
T ss_pred             CCceEEEcCCCC-cEEEE-ECCCCEEEEeCCCCEEE----------Eecc-cCCCCcccccceEEEecCCCEEEEECCcc
Confidence            478899998 55 44444 44455888887655311          0000 00001123467899999 998777642  


Q ss_pred             ----------------CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe-ccCc
Q 021484          108 ----------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDCG  170 (312)
Q Consensus       108 ----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~-~~dg  170 (312)
                                      ++.|..||..++                +. ..+......  ...+++ ++++++|+.+ +..+
T Consensus       148 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~----------------~~-~~~~~~~~~--p~gia~-~~dg~~lyv~d~~~~  207 (322)
T 2fp8_A          148 LYDDRGVQQIMDTSDKTGRLIKYDPSTK----------------ET-TLLLKELHV--PGGAEV-SADSSFVLVAEFLSH  207 (322)
T ss_dssp             SCCTTCHHHHHHHTCCCEEEEEEETTTT----------------EE-EEEEEEESC--CCEEEE-CTTSSEEEEEEGGGT
T ss_pred             cccccccceehcccCCCceEEEEeCCCC----------------EE-EEeccCCcc--CcceEE-CCCCCEEEEEeCCCC
Confidence                            266888887654                22 222211112  567898 8999866555 5678


Q ss_pred             eEEEEeccCCe--eEEEeecCccceEEEEEcCCCCeEEEEeC----------CCcEEEccCCCCCCCCCCCChh---hhh
Q 021484          171 HLFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHIPMFATCGI----------EKTVKLWAPMPTDFPPLPDNAE---KIM  235 (312)
Q Consensus       171 ~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~t~~~----------d~~i~iwd~~~~~~~~~~~~~~---~~~  235 (312)
                      .|.+|++....  ....+....+ ...+++.++|++.++...          .+.|..+|.....+..+.....   ...
T Consensus       208 ~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~  286 (322)
T 2fp8_A          208 QIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHF  286 (322)
T ss_dssp             EEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCC
T ss_pred             eEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccc
Confidence            99999987421  1112211223 788999999998666644          4678888876433222211111   001


Q ss_pred             hhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          236 KANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ..... .++.+.++...++.|..+++...
T Consensus       287 ~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          287 EQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             CEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             eEEEE-eCCEEEEeecCCCceEEEecccc
Confidence            11111 24556666666677777775533

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.33  E-value=0.00024  Score=59.82  Aligned_cols=192  Identities=8%  Similarity=-0.087  Sum_probs=111.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-cCC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDE  109 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~  109 (312)
                      .+..++|++.+..++.+-...+.|+.+++......               .+..........+++.+.+. ++++- ..+
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~---------------~~~~~~~~~p~glavd~~~g~lY~~d~~~~  181 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE---------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTS  181 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE---------------EEECSSCSCCCCEEEETTTTEEEEEETTTT
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE---------------EEEeCCCCCccEEEEEeCCCeEEEEcCCCC
Confidence            46789999866467777677889999998765311               11111123345788887554 44443 477


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEe-ccC-ceEEEEeccCCeeEEEe
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSG-SDC-GHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~-~~d-g~v~iwd~~~~~~~~~~  186 (312)
                      .|.+.++...                 ....+. ....  ....+++ +|.+..|+.+ ... +.|..+++.........
T Consensus       182 ~I~~~~~dg~-----------------~~~~l~~~~l~--~P~giav-dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~  241 (386)
T 3v65_B          182 RIEVANLDGA-----------------HRKVLLWQSLE--KPRAIAL-HPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA  241 (386)
T ss_dssp             EEEECBTTSC-----------------SCEEEECSSCS--CEEEEEE-ETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred             eEEEEeCCCC-----------------ceEEeecCCCC--CCcEEEE-EcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE
Confidence            8888887653                 222222 2222  2688888 7766555444 344 78988888744333333


Q ss_pred             ecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCCCCCCCCCC-ChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          187 VGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      ...-...+.++++|++..|..+ ...+.|..+++.+.....+.. ......... . .++.++++-...+.|..++
T Consensus       242 ~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gia-v-~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          242 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAIT-V-FEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEE-E-ETTEEEEEETTTTEEEEEE
T ss_pred             ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEE-E-ECCEEEEeeCCCCeEEEEE
Confidence            3333457899999876665444 466789999987643322111 111111111 1 2345566666666666665

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.32  E-value=0.00035  Score=59.08  Aligned_cols=198  Identities=8%  Similarity=-0.018  Sum_probs=113.9

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEEe-cC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-ND  108 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d  108 (312)
                      ..+..++|++.+..++.+-...+.|+.+++......      .     ....+..........+++.+.+ .++++- ..
T Consensus       112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~------~-----~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~  180 (400)
T 3p5b_L          112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------S-----SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL  180 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC------------C-----CCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC------C-----cceEEEeCCCCCcccEEEEecCCceEEEECCC
Confidence            457899999876466666667788998888652200      0     0111112234467789998854 455553 57


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec--cCceEEEEeccCCeeEEEe
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~  186 (312)
                      +.|.+.++...                .....+.....  ....+++ +|.+.+|+...  ..+.|...++........+
T Consensus       181 ~~I~~~~~~g~----------------~~~~l~~~~~~--~P~~iav-dp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~  241 (400)
T 3p5b_L          181 GTVSVADTKGV----------------KRKTLFRENGS--KPRAIVV-DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  241 (400)
T ss_dssp             TEEEEECTTTC----------------SEEEEEECSSC--CEEEEEE-ETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred             CeEEEEeCCCC----------------ceEEEEeCCCC--CcceEEE-ecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence            88999988754                22222222222  2788998 77666555443  2478988888744333333


Q ss_pred             ecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCCCCCCCCC---hhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFPPLPDN---AEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      ...-...+.++++|++..|..+. ....|..+|+.+.....+...   ........ . .++.++++-...+.|..++
T Consensus       242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~-v-~~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA-V-FEDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEE-E-ETTEEEEEESSSCSEEEEE
T ss_pred             ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEE-E-eCCEEEEecCCCCeEEEEE
Confidence            33335678999998877765554 567899999876543322110   11111111 1 2344555665666666666

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.31  E-value=0.00022  Score=58.26  Aligned_cols=197  Identities=9%  Similarity=-0.040  Sum_probs=114.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-cCC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDE  109 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~  109 (312)
                      .+.++.|++.++.++.+-...+.|..+++.....              ...+..........+++.+.+. ++.+- ..+
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~--------------~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~  101 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--------------VQNVVVSGLLSPDGLACDWLGEKLYWTDSETN  101 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC--------------CCEEEEECCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc--------------eEEEEcCCCCCccEEEEEcCCCeEEEEECCCC
Confidence            4668999986646777777788999999876531              0001011123456788887554 55553 578


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEec--cCceEEEEeccCCeeEEEe
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~  186 (312)
                      .|.++++...                 ....+. ....  ....+++ +|.+..|+.+.  ..+.|...++........+
T Consensus       102 ~I~~~~~dG~-----------------~~~~l~~~~~~--~P~giav-dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~  161 (318)
T 3sov_A          102 RIEVSNLDGS-----------------LRKVLFWQELD--QPRAIAL-DPSSGFMYWTDWGEVPKIERAGMDGSSRFIII  161 (318)
T ss_dssp             EEEEEETTSC-----------------SCEEEECSSCS--SEEEEEE-EGGGTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred             EEEEEECCCC-----------------cEEEEEeCCCC--CccEEEE-eCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence            9999998753                 223332 2222  2688888 77655555444  3578888888643322222


Q ss_pred             ecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCCCCCCCCCC-ChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          187 VGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ...-...+.++++|++..|..+ ...+.|..+++.+.....+.. ......... . .++.++.+-...+.|..++..++
T Consensus       162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gla-v-~~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT-L-FEDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEE-E-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEE-E-eCCEEEEEecCCCeEEEEECCCC
Confidence            2223456899999976665544 467889999987644322211 111111111 1 13455566666677777765433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.29  E-value=1.9e-05  Score=64.71  Aligned_cols=144  Identities=8%  Similarity=0.038  Sum_probs=86.6

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV  111 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i  111 (312)
                      .+.++...+++  .+..++.+  |..+|. +++.....               ............. ++.+.+.+.++.|
T Consensus        61 ~~~~~~~~~~g--~l~v~t~~--l~~~d~-~g~~~~~~---------------~~~~~~~~~~~~~-~~~l~v~t~~~~l  119 (330)
T 3hxj_A           61 IECRPSIGKDG--TIYFGSDK--VYAINP-DGTEKWRF---------------DTKKAIVSDFTIF-EDILYVTSMDGHL  119 (330)
T ss_dssp             EEECCEETTTT--EECCSSCE--EEEECC-CGGGGGGS---------------CC-----CCEEEE-TTEEEEECTTSEE
T ss_pred             cccceEEecCC--cEEEecCc--EEEECC-CCcEEEEE---------------ECCCCcccCceEE-CCEEEEEecCCEE
Confidence            45667776666  45555554  888886 44422111               0011111122222 5555555568999


Q ss_pred             EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCcc
Q 021484          112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  191 (312)
Q Consensus       112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  191 (312)
                      ..+|.. +                +....+.....  .+.++.. .+++. +..++.++.|..+|.. ++.+..+.....
T Consensus       120 ~~~d~~-g----------------~~~~~~~~~~~--~~~~~~~-~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~  177 (330)
T 3hxj_A          120 YAINTD-G----------------TEKWRFKTKKA--IYATPIV-SEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDA  177 (330)
T ss_dssp             EEECTT-S----------------CEEEEEECSSC--CCSCCEE-CTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred             EEEcCC-C----------------CEEEEEcCCCc--eeeeeEE-cCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence            999987 5                34444433332  2556665 55665 5667788999999998 877767665556


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          192 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       192 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                      .+.++...+++.+++..   +.|..+| .++
T Consensus       178 ~~~~~~~d~~g~l~v~t---~~l~~~d-~~g  204 (330)
T 3hxj_A          178 ITSAASIGKDGTIYFGS---DKVYAIN-PDG  204 (330)
T ss_dssp             CCSCCEECTTCCEEEES---SSEEEEC-TTS
T ss_pred             ceeeeEEcCCCEEEEEe---CEEEEEC-CCC
Confidence            67777787787765544   8899999 443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.24  E-value=4e-05  Score=69.65  Aligned_cols=55  Identities=11%  Similarity=0.034  Sum_probs=44.0

Q ss_pred             CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          169 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       169 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      +|.|..||+.+++.+-.++.+. ++..-.+...+..++.++.|+.|+.||.++++.
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence            4889999999999888776553 333345566788888999999999999999874

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.22  E-value=0.00046  Score=56.01  Aligned_cols=225  Identities=11%  Similarity=0.013  Sum_probs=123.3

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC-
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND-  108 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d-  108 (312)
                      .....++|++++ +++++-..++.|..||......               ..  ......+..+++.++|+++++. .. 
T Consensus        32 ~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~~~---------------~~--~~~~~~p~gia~~~dG~l~vad~~~~   93 (306)
T 2p4o_A           32 TFLENLASAPDG-TIFVTNHEVGEIVSITPDGNQQ---------------IH--ATVEGKVSGLAFTSNGDLVATGWNAD   93 (306)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTTEEEEECTTCCEE---------------EE--EECSSEEEEEEECTTSCEEEEEECTT
T ss_pred             CCcceEEECCCC-CEEEEeCCCCeEEEECCCCceE---------------EE--EeCCCCceeEEEcCCCcEEEEeccCC
Confidence            346789999988 6777777889999998765321               00  0112457899999999977664 32 


Q ss_pred             C-cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee-EEEe
Q 021484          109 E-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VRLM  186 (312)
Q Consensus       109 ~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~  186 (312)
                      + .|..++..++                +. ..+...........++. .+.+..+++-...+.|+++|..+++. +...
T Consensus        94 ~~~v~~~d~~~g----------------~~-~~~~~~~~~~~~~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~  155 (306)
T 2p4o_A           94 SIPVVSLVKSDG----------------TV-ETLLTLPDAIFLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLE  155 (306)
T ss_dssp             SCEEEEEECTTS----------------CE-EEEEECTTCSCEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEcCCCC----------------eE-EEEEeCCCccccCcccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEE
Confidence            2 4777776665                22 22221111112345554 45555555555688999999876532 2111


Q ss_pred             e---------cCccceEEEEEcCCCCeEE-EEeCCCcEEEccCCC-CCCCCCCCCh-hhhhhhhccCCCCceeEEecCCc
Q 021484          187 V---------GDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMP-TDFPPLPDNA-EKIMKANKQGREDHSRITLTPDV  254 (312)
Q Consensus       187 ~---------~~~~~v~~~~~~p~~~~l~-t~~~d~~i~iwd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~  254 (312)
                      .         ..-...+.+  +|+++.|. +-...+.|..+++.. +.+....... .....-....+++.+.++....+
T Consensus       156 ~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~  233 (306)
T 2p4o_A          156 HPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYN  233 (306)
T ss_dssp             CGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTC
T ss_pred             CCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCC
Confidence            1         011234555  78887654 445678999999875 3221110000 00112223445677777777777


Q ss_pred             eEEEEEecccCccce--eEee-cCCCccCCC---CCCCeEEEeecC
Q 021484          255 IMHVLRLQRRQTLAY--RERR-YNAADFESD---EEEGETYLLGFS  294 (312)
Q Consensus       255 ~i~i~~~~~~~~~~~--~~~~-~~~~~~~~~---~~~~~v~~~~~~  294 (312)
                      .|.+++.. ......  .... .....+...   .+.+.+|+.+..
T Consensus       234 ~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          234 SVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             eEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            78887743 211111  0100 112333333   455678888764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.19  E-value=0.00082  Score=55.71  Aligned_cols=196  Identities=11%  Similarity=-0.004  Sum_probs=112.1

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-cC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-ND  108 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d  108 (312)
                      ...+|.+..+..  .|+.+. ...|+..++.....               ..+ ......+..++|++... ++.+- ..
T Consensus        34 d~~~C~~~~~~~--~ll~~~-~~~I~~i~~~g~~~---------------~~~-~~~~~~~~~l~~d~~~~~ly~~D~~~   94 (349)
T 3v64_C           34 DRRSCKALGPEP--VLLFAN-RIDIRQVLPHRSEY---------------TLL-LNNLENAIALDFHHRRELVFWSDVTL   94 (349)
T ss_dssp             TSSCEEESSSCC--EEEEEC-BSCEEEECTTSCCE---------------EEE-ECSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCcccccccCc--eeEeec-ccceEEEeCCCCee---------------EEe-ecCCCceEEEEEeccccEEEEEeccC
Confidence            345566666633  333332 34577777765431               111 11234578999998665 44443 58


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  187 (312)
                      +.|+.+++...                ...........  ....+++ ++ .+++.++-...+.|.+.++........+.
T Consensus        95 ~~I~r~~~~g~----------------~~~~~~~~~~~--~p~glav-d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~  155 (349)
T 3v64_C           95 DRILRANLNGS----------------NVEEVVSTGLE--SPGGLAV-DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW  155 (349)
T ss_dssp             TEEEEEETTSC----------------SCEEEECSSCS--CCCEEEE-ETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             CceEEEecCCC----------------CceEEEeCCCC--CccEEEE-ecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe
Confidence            88999998764                22222222222  2567888 65 45555666677899999987544333333


Q ss_pred             cCccceEEEEEcCCCCeEE-EEeCC-CcEEEccCCCCCCCCCCCChhhhhhhhccCC-CCceeEEecCCceEEEEEeccc
Q 021484          188 GDRHVVNQLEPHPHIPMFA-TCGIE-KTVKLWAPMPTDFPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       188 ~~~~~v~~~~~~p~~~~l~-t~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ........++++|.+..|. +-... +.|...++.+.....+....-....-..+.+ ++.+.++-+..+.|..+++...
T Consensus       156 ~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          156 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            3335678999999766544 44444 7888888876543332211111111122343 4566677777788888886643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.18  E-value=0.00014  Score=65.76  Aligned_cols=202  Identities=9%  Similarity=0.020  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCcEEEEEe-CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec--C-
Q 021484           33 LNAIVIDPRNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--D-  108 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--d-  108 (312)
                      ..++++.+++ .+++.|+ .+..+.+||..+.++....            ....  ...-.+++..+++++++.+.  + 
T Consensus       245 ~~~~~~~~~g-~lyv~GG~~~~~v~~yd~~t~~W~~~~------------~~~~--~R~~~s~~~~~dg~iyv~GG~~~~  309 (656)
T 1k3i_A          245 CPGISMDGNG-QIVVTGGNDAKKTSLYDSSSDSWIPGP------------DMQV--ARGYQSSATMSDGRVFTIGGSWSG  309 (656)
T ss_dssp             SCEEEECTTS-CEEEECSSSTTCEEEEEGGGTEEEECC------------CCSS--CCSSCEEEECTTSCEEEECCCCCS
T ss_pred             cccccCCCCC-CEEEeCCCCCCceEEecCcCCceeECC------------CCCc--cccccceEEecCCeEEEEeCcccC
Confidence            3457777888 7888887 4568999999988754221            0001  11112445567888777753  3 


Q ss_pred             ----CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC---------ceEEEE
Q 021484          109 ----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---------GHLFIW  175 (312)
Q Consensus       109 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---------g~v~iw  175 (312)
                          ..+.+||..+..         |..........+....     ....+ ..++..++.++.+         ..+..|
T Consensus       310 ~~~~~~~e~yd~~t~~---------W~~~~~~~~~p~~~~~-----~~~~~-~~~~~iyv~Gg~~g~~~~~~~~~~v~~y  374 (656)
T 1k3i_A          310 GVFEKNGEVYSPSSKT---------WTSLPNAKVNPMLTAD-----KQGLY-RSDNHAWLFGWKKGSVFQAGPSTAMNWY  374 (656)
T ss_dssp             SSCCCCEEEEETTTTE---------EEEETTSCSGGGCCCC-----TTGGG-TTTCSCCEEECGGGCEEECCSSSEEEEE
T ss_pred             CcccccceEeCCCCCc---------ceeCCCcccccccccc-----cccee-ecCCceEEEECCCCcEEEecCccceeee
Confidence                468999987641         1100000000000000     00111 2344444444443         456788


Q ss_pred             eccCCeeEEEeecCcc---------ceEEEEEcC-CCCeEEEEeCCC-----------cEEEccCCCCCCCCCC--C-Ch
Q 021484          176 KKKGGKLVRLMVGDRH---------VVNQLEPHP-HIPMFATCGIEK-----------TVKLWAPMPTDFPPLP--D-NA  231 (312)
Q Consensus       176 d~~~~~~~~~~~~~~~---------~v~~~~~~p-~~~~l~t~~~d~-----------~i~iwd~~~~~~~~~~--~-~~  231 (312)
                      |..+.........+..         .-.++.|.. ++++++.|+.++           .|.+||+.+.....+.  . ..
T Consensus       375 d~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~  454 (656)
T 1k3i_A          375 YTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF  454 (656)
T ss_dssp             ECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS
T ss_pred             ecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC
Confidence            8877654433322211         223444543 667788877543           6888998876532211  0 11


Q ss_pred             hhhhhhhccCCCCceeEEecCC-----------ceEEEEEeccc
Q 021484          232 EKIMKANKQGREDHSRITLTPD-----------VIMHVLRLQRR  264 (312)
Q Consensus       232 ~~~~~~~~~~~~~~~l~s~~~d-----------~~i~i~~~~~~  264 (312)
                      ..........+++.+++.++.+           ..+.+||..+.
T Consensus       455 ~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          455 ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence            1111122233467788887754           45788886543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.12  E-value=0.0015  Score=60.01  Aligned_cols=198  Identities=8%  Similarity=-0.037  Sum_probs=113.5

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-cC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-ND  108 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d  108 (312)
                      ..+.+++|++.+..++.+-...+.|+.+++.......           ....++.........|++.+.+. ++++- ..
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~-----------~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~  492 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-----------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL  492 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTT
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc-----------ceeEEEecCCCCcceeeeeecCCcEEEEecCC
Confidence            3567899998664677777777889888887532100           01111122234566889988775 44443 58


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEec-c-CceEEEEeccCCeeEEE
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGS-D-CGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~-~-dg~v~iwd~~~~~~~~~  185 (312)
                      +.|.+.++...                 ....+. ....  ....|++ +|...+|+... . .+.|...++........
T Consensus       493 ~~I~v~~ldG~-----------------~~~~l~~~~l~--~P~gIaV-Dp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l  552 (791)
T 3m0c_C          493 GTVSVADTKGV-----------------KRKTLFRENGS--KPRAIVV-DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  552 (791)
T ss_dssp             TEEEEEETTSS-----------------SEEEEEECTTC--CEEEEEE-ETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred             CeEEEEeCCCC-----------------eEEEEEeCCCC--CcceEEE-ecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence            89999998764                 333332 2222  2788998 77755555443 3 37899999874444333


Q ss_pred             eecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCCCCCCCCC---hhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFPPLPDN---AEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      +...-.....|++++.+..|..+. ....|...++.+.....+...   ....+.+..  .++.++++-...+.|...+.
T Consensus       553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANR  630 (791)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEET
T ss_pred             EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeC
Confidence            333335788999998777655554 567899999877654332111   011111111  13345555556666665553

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.00  E-value=0.00061  Score=55.22  Aligned_cols=161  Identities=10%  Similarity=0.072  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccc--cCCCccEEEEEE---ccCCCeEEEec
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI--GKNNIHITGLAY---SNTSELLISYN  107 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~---~~~~~~l~s~~  107 (312)
                      .-+++|++....++++.-..++|..|+...+.....          ....+.  ......+..|.|   .|+++++++..
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~----------~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~   84 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV----------VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK   84 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE----------CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE----------ecCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence            457899986644555555799999999875532110          011100  011224579999   68887777532


Q ss_pred             --------------CCcEEEEEcC---CCcCCCCCcCCcccccCCCCCceEe--ccc---------CCceeeEEEEecCC
Q 021484          108 --------------DELVYLFEKN---MGLGPSPLSLSPEDLQKREEPQVYS--GHR---------NSQTVKGVNFFGPN  159 (312)
Q Consensus       108 --------------d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~v~~v~~~s~~  159 (312)
                                    +..|..||+.   ++                +.+....  ...         .......++. .++
T Consensus        85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg----------------~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav-D~~  147 (334)
T 2p9w_A           85 NAKSFNFADQSSHGASSFHSFNLPLSENS----------------KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ-DRD  147 (334)
T ss_dssp             ETTTTCTTSCCSSSCCEEEEEESSCCTTC----------------CCSEEEESHHHHHHHHHHHSSCCEEEEEEEE-CTT
T ss_pred             ccccccccccccCCCCEEEEEcCCcCCCC----------------CEEEEecCccccccccccccccccCCceeEE-CCC
Confidence                          5679999998   55                3433322  110         1112778888 999


Q ss_pred             CCEEEEeccC-ceEEEEeccCCeeEEEeecC------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          160 DEYVMSGSDC-GHLFIWKKKGGKLVRLMVGD------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       160 ~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                      |+..++++.. +.|...+.... .+..+...      ....+.++++|++..|++....+.|.-+|+..
T Consensus       148 GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          148 GNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             SCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            9999989888 88888887643 33333211      12367899999999988887799999999873

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.00  E-value=0.0044  Score=55.51  Aligned_cols=196  Identities=9%  Similarity=-0.036  Sum_probs=111.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-cCC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDE  109 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~  109 (312)
                      ...+++|++.+..++.+-...+.|..+++....              ....+..........+++.+.+. ++++- ..+
T Consensus        41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~--------------~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~  106 (619)
T 3s94_A           41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--------------SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETN  106 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC--------------ceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCC
Confidence            467899999774666666667889888887542              01111122224678999998665 44443 488


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEec--cCceEEEEeccCCeeEEEe
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~  186 (312)
                      .|.+.++...                 ..+.+. ....  ....+++ +|.+.+|+...  ..+.|...++.........
T Consensus       107 ~I~v~~~dG~-----------------~~~~l~~~~l~--~P~~Iav-dp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~  166 (619)
T 3s94_A          107 RIEVSNLDGS-----------------LRKVLFWQELD--QPRAIAL-DPSSGFMYWTDWGEVPKIERAGMDGSSRFIII  166 (619)
T ss_dssp             EEEEEETTSC-----------------SCEEEECSSCS--CCCCEEE-ETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred             EEEEEECCCC-----------------CEEEEEeCCCC--CCceEEE-ecCCCeEEEeccCCCCEEEEEECCCCceEEEE
Confidence            9999998764                 333333 2222  2678988 77655554443  2467777777643333333


Q ss_pred             ecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCCCCCCCCCC-ChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          187 VGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      ...-...+.+++++++..|..+ ...+.|...++.+.....+.. ......... .. ++...++-...+.|...+..+
T Consensus       167 ~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~-~~-~~~ly~td~~~~~V~~~d~~t  243 (619)
T 3s94_A          167 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT-LF-EDILYWTDWSTHSILACNKYT  243 (619)
T ss_dssp             CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEE-ES-SSEEEEECTTTCSEEEEESSS
T ss_pred             eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEE-Ee-CCEEEEecCCCCEEEEEECCC
Confidence            2334567899999976665544 466789999988754333321 111111111 11 234555655666666666543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.00  E-value=3e-05  Score=70.53  Aligned_cols=199  Identities=8%  Similarity=-0.038  Sum_probs=107.2

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEEe-cCC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-NDE  109 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d~  109 (312)
                      .+.+++|++.+..++++-...+.|+.+++......      .     ....++.........|++.+.+ .++++- ..+
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~------~-----~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~  475 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------S-----SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG  475 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-------C-----CCCCBCCSCC--CCCEECCCSSSBCEECCTTTS
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCC------c-----ceEEEEeCCCCCcceEEEEeeCCcEEEEeccCC
Confidence            45688999876455555566788999998751100      0     0001111111234567887544 455553 578


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc--CceEEEEeccCCeeEEEee
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD--CGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~  187 (312)
                      .|.++++...                 ....+.... ......+++ +|.+.+|+.+..  .+.|..+++........+.
T Consensus       476 ~I~v~d~dg~-----------------~~~~l~~~~-~~~P~giav-Dp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~  536 (699)
T 1n7d_A          476 TVSVADTKGV-----------------KRKTLFREQ-GSKPRAIVV-DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  536 (699)
T ss_dssp             CEEEEBSSSC-----------------CEEEECCCS-SCCCCCEEC-CSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred             eEEEEecCCC-----------------ceEEEEeCC-CCCcceEEE-ccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence            8999998654                 222222111 122577888 776665555443  2688888876433222222


Q ss_pred             cCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCCCCCCCC---hhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          188 GDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPDN---AEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       188 ~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      ..-...+.|+|+|++.. +++-...+.|..+++.+.....+...   ......+. . ....++++-...+.|..++..
T Consensus       537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~gla-v-d~~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA-V-FEDKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCE-E-ETTEEEEECSTTTCEEEEETT
T ss_pred             CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeE-E-ECCEEEEEeCCCCeEEEEEcc
Confidence            22345678999997655 44545677899999876443222111   11111111 1 123555666666777777643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.00  E-value=0.0016  Score=60.37  Aligned_cols=163  Identities=14%  Similarity=0.141  Sum_probs=106.1

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccc-cccCCCccEEEEEEccCCCeEEEecC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH-LIGKNNIHITGLAYSNTSELLISYND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~d  108 (312)
                      ...|.++...+++  .|..|+.++-|..|+..+.....          +.... ...-....|.++...++|.+.++..+
T Consensus       309 ~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~----------~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~  376 (795)
T 4a2l_A          309 QRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFKN----------IRNIPYKNSLSDNVVSCIVEDKDKNLWIGTND  376 (795)
T ss_dssp             SSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSEE----------ECCCTTSSSCSCSSEEEEEECTTSCEEEEESS
T ss_pred             CCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccceE----------EcCCCCCCCCCCCeeEEEEECCCCCEEEEECC
Confidence            4579999999987  35667777788889876553110          00000 00112456999999999998887777


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc-------cCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-------RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~  181 (312)
                      +-|..|+..++                 ....+...       .....|.++.. +++++.|..|+.++-|..+|..+++
T Consensus       377 ~Gl~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~v~~i~~-d~~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          377 GGLNLYNPITQ-----------------RFTSYTLQEDESARGIGSNNIKAVYV-DEKKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             SCEEEECTTTC-----------------CEEEECCC------CCSCSCEEEEEE-ETTTTEEEEEETTTEEEEEETTTCC
T ss_pred             CCeEEEcCCCC-----------------cEEEEecCCCCcccCCCCccEEEEEE-cCCCCEEEEEeCcCceeEEeCCCCc
Confidence            78999987654                 11222100       01133888887 7788756667777789999988776


Q ss_pred             eEEEee----cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          182 LVRLMV----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       182 ~~~~~~----~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      ......    .....|.++...+++.+.+...  +-|.+|+..++..
T Consensus       439 ~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~  483 (795)
T 4a2l_A          439 VENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSF  483 (795)
T ss_dssp             EEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEE
T ss_pred             EEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeE
Confidence            433221    1245789999888888765543  4588899877653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.98  E-value=0.0026  Score=51.88  Aligned_cols=180  Identities=12%  Similarity=0.029  Sum_probs=101.0

Q ss_pred             CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCcCCCCCcCCcc
Q 021484           53 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPE  130 (312)
Q Consensus        53 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~  130 (312)
                      ..|+..|+.+.+..               .+ ......+..++|++.+. ++.+- ..+.|+.+++.+....        
T Consensus        10 ~~I~~i~~~~~~~~---------------~~-~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~--------   65 (316)
T 1ijq_A           10 HEVRKMTLDRSEYT---------------SL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------   65 (316)
T ss_dssp             SSEEEEETTSCCCE---------------EE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------
T ss_pred             CeEEEEECCCcceE---------------eh-hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC--------
Confidence            56888888866421               11 11234578999998765 44453 4789999998751000        


Q ss_pred             cccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021484          131 DLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~  209 (312)
                          ......+.....  ....+++ ++ .+++.++-...+.|.++++........+.........++++|.+..|..+.
T Consensus        66 ----~~~~~~~~~~~~--~p~glav-d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d  138 (316)
T 1ijq_A           66 ----SSYDTVISRDIQ--APDGLAV-DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD  138 (316)
T ss_dssp             ------CEEEECSSCS--CCCEEEE-ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred             ----cccEEEEeCCCC--CcCEEEE-eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEc
Confidence                011112221112  2578888 65 445555667788999999875443333333335678999999777654444


Q ss_pred             C-C-CcEEEccCCCCCCCCCC-CChhhhhhhhccCC-CCceeEEecCCceEEEEEeccc
Q 021484          210 I-E-KTVKLWAPMPTDFPPLP-DNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       210 ~-d-~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      . . +.|...++.+.....+. ...... .-..+.+ ++.+.++-+..+.|..+++...
T Consensus       139 ~~~~~~I~~~~~dG~~~~~~~~~~~~~P-~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          139 WGTPAKIKKGGLNGVDIYSLVTENIQWP-NGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             CSSSCEEEEEETTSCCEEEEECSSCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cCCCCeEEEEcCCCCCeEEEEECCCCCc-eEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            3 2 67888887654322211 011111 1122333 4556667777788888887643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.97  E-value=0.0019  Score=54.36  Aligned_cols=193  Identities=10%  Similarity=-0.008  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-cCCc
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDEL  110 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~  110 (312)
                      -+|.+..+..  .|+.+ ....|+..++.....               ..+ ......+..++|++.+. ++.+- ..+.
T Consensus        79 ~~C~~~~~~~--~l~~~-~~~~I~~i~~~~~~~---------------~~~-~~~~~~~~gl~~d~~~~~ly~~D~~~~~  139 (386)
T 3v65_B           79 RSCKALGPEP--VLLFA-NRIDIRQVLPHRSEY---------------TLL-LNNLENAIALDFHHRRELVFWSDVTLDR  139 (386)
T ss_dssp             SCEEECSSCC--EEEEE-CBSCEEEECTTSCCC---------------EEE-ECSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CeECCccccc--eeEee-cCccceeeccCCCcE---------------EEE-ecCCCccEEEEEecCCCeEEEEeCCCCc
Confidence            3455555532  33333 335677777765431               111 11234578999998665 44453 5888


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  189 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  189 (312)
                      |+.+++...                .....+.....  ....+++ ++. +.+.++-...+.|.+.++........+...
T Consensus       140 I~r~~~~g~----------------~~~~~~~~~~~--~p~glav-d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~  200 (386)
T 3v65_B          140 ILRANLNGS----------------NVEEVVSTGLE--SPGGLAV-DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS  200 (386)
T ss_dssp             EEEEETTSC----------------CEEEEECSSCS--CCCCEEE-ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSS
T ss_pred             EEEEecCCC----------------CcEEEEeCCCC--CccEEEE-EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCC
Confidence            999998764                22222221221  2567887 654 555566667789999998754433333333


Q ss_pred             ccceEEEEEcCCCCeEEEEe-CC-CcEEEccCCCCCCCCCCC-ChhhhhhhhccCC-CCceeEEecCCceEEEEEeccc
Q 021484          190 RHVVNQLEPHPHIPMFATCG-IE-KTVKLWAPMPTDFPPLPD-NAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       190 ~~~v~~~~~~p~~~~l~t~~-~d-~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ......++++|.+..|..+. .. +.|..+++.+.....+.. ..... .-..+.+ ++.+.++-+..+.|..+++...
T Consensus       201 l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~P-nGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          201 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWP-NGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE-EEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCe-eeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            35678999999777655444 44 678888877654322211 11111 1122332 4556677777777887776543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.97  E-value=0.0009  Score=57.18  Aligned_cols=154  Identities=13%  Similarity=0.176  Sum_probs=95.5

Q ss_pred             ceEEEEEcC-CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec-C
Q 021484           32 RLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-D  108 (312)
Q Consensus        32 ~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-d  108 (312)
                      ....++++| ++ ..|+.+...+.|+.+|+..+.+.               .+ .........++|+++|+ ++++.. +
T Consensus       138 ~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v~---------------~~-~~~~~~P~~ia~d~~G~~lyvad~~~  200 (430)
T 3tc9_A          138 GAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYVS---------------TV-YSGLSKVRTICWTHEADSMIITNDQN  200 (430)
T ss_dssp             CCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEEE---------------EE-ECCCSCEEEEEECTTSSEEEEEECCS
T ss_pred             CCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEEE---------------EE-ecCCCCcceEEEeCCCCEEEEEeCCC
Confidence            457889998 34 34555444488999998876531               11 11245578999999998 455532 2


Q ss_pred             C----cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEeccCCeeE
Q 021484          109 E----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       109 ~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                      +    .+.+++.....               .....+....   ....+++ +| ++.++++-...+.|..++..++...
T Consensus       201 ~~~~~~v~~~~~~g~~---------------~~~~~l~~~~---~p~giav-dp~~g~lyv~d~~~~~V~~~~~~~~~~~  261 (430)
T 3tc9_A          201 NNDRPNNYILTRESGF---------------KVITELTKGQ---NCNGAET-HPINGELYFNSWNAGQVFRYDFTTQETT  261 (430)
T ss_dssp             CTTSEEEEEEEGGGTS---------------CSEEEEEECS---SCCCEEE-CTTTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             CcccceEEEEeCCCce---------------eeeeeeccCC---CceEEEE-eCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence            2    24444443220               1112232221   2577888 88 6777777777899999999877643


Q ss_pred             EEeec-CccceEEEEEcCCCCe-EEEEeCCCcEEEccCCC
Q 021484          184 RLMVG-DRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMP  221 (312)
Q Consensus       184 ~~~~~-~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~  221 (312)
                      ..... .......++|+|++++ +++-...+.|..++...
T Consensus       262 ~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          262 PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            22222 2235678999999995 45555678899987654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.92  E-value=0.0054  Score=55.00  Aligned_cols=193  Identities=9%  Similarity=-0.038  Sum_probs=114.2

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-cCC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDE  109 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~  109 (312)
                      .+.+++|++.+..++.+-..++.|+.+++.....               ..+..........+++.+.+. ++.+- ..+
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~---------------~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~  102 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSAL---------------EHVVEFGLDYPEGMAVDWLGKNLYWADTGTN  102 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc---------------EEEEeCCCCCcceEEEEeCCCEEEEEECCCC
Confidence            5779999997756777777789999998875431               111111123456888887665 44443 478


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEec--cCceEEEEeccCCeeEEEe
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~  186 (312)
                      .|.+.++...                 ....+. ....  ....+++ +|...+|+...  ..+.|...++..... ..+
T Consensus       103 ~I~v~~~dG~-----------------~~~~l~~~~l~--~P~~iav-dp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l  161 (628)
T 4a0p_A          103 RIEVSKLDGQ-----------------HRQVLVWKDLD--SPRALAL-DPAEGFMYWTEWGGKPKIDRAAMDGSER-TTL  161 (628)
T ss_dssp             EEEEEETTST-----------------TCEEEECSSCC--CEEEEEE-ETTTTEEEEEECSSSCEEEEEETTSCSC-EEE
T ss_pred             EEEEEecCCC-----------------cEEEEEeCCCC--CcccEEE-ccCCCeEEEeCCCCCCEEEEEeCCCCce-EEE
Confidence            8999998754                 223332 2222  2688998 77555555443  357888888874443 333


Q ss_pred             ecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          187 VGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      ...-.....+++++++..|..+ ...+.|...++.+.....+............  .++.+.++-...+.|...+..
T Consensus       162 ~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav--~~~~ly~tD~~~~~I~~~dk~  236 (628)
T 4a0p_A          162 VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQ--YQDYIYWTDWSRRSIERANKT  236 (628)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEE--ETTEEEEEETTTTEEEEEETT
T ss_pred             ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEE--ECCEEEEecCCCCEEEEEECC
Confidence            3344567899999987765555 4667899999876543221111111111111  124455565556666666643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.91  E-value=0.0048  Score=52.13  Aligned_cols=182  Identities=12%  Similarity=0.026  Sum_probs=104.8

Q ss_pred             CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCcCCCCCcCC
Q 021484           51 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLS  128 (312)
Q Consensus        51 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~  128 (312)
                      ....|+..++......               .+ ......+..++|++.+. ++.+- ..+.|+.+++......      
T Consensus        90 ~~~~I~~i~l~~~~~~---------------~~-~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~------  147 (400)
T 3p5b_L           90 NRHEVRKMTLDRSEYT---------------SL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------  147 (400)
T ss_dssp             ETTEEEEECTTSCSCE---------------EE-ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------
T ss_pred             ccceeEEEccCCccee---------------Ee-ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC------
Confidence            3478888888755311               11 12245678999998665 44443 5788999988652000      


Q ss_pred             cccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEE
Q 021484          129 PEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFAT  207 (312)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t  207 (312)
                            ......+.....  ....+++ ++ .+++.++-...+.|.+.++........+.........++++|.+..|..
T Consensus       148 ------~~~~~~~~~~~~--~p~glav-D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~  218 (400)
T 3p5b_L          148 ------SSYDTVISRDIQ--APDGLAV-DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW  218 (400)
T ss_dssp             ------CCCEEEECSSCS--CEEEEEE-ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEE
T ss_pred             ------CcceEEEeCCCC--CcccEEE-EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEE
Confidence                  011122221222  2678888 65 5666666677889999998865544444434456789999997766554


Q ss_pred             Ee--CCCcEEEccCCCCCCCCCCC-ChhhhhhhhccCC-CCceeEEecCCceEEEEEeccc
Q 021484          208 CG--IEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       208 ~~--~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ..  ..+.|...++.+.....+.. ..... .-..+.+ ++.+.++-+....|..+++...
T Consensus       219 td~~~~~~I~~~~~dG~~~~~~~~~~l~~P-~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          219 TDWGTPAKIKKGGLNGVDIYSLVTENIQWP-NGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             EECSSSCCEEEEETTSCSCEEEECSSCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EeCCCCCEEEEEeCCCCccEEEEECCCCce-EEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            44  24788888887654322211 11111 1112333 4556667677778888887654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.89  E-value=0.0011  Score=58.75  Aligned_cols=107  Identities=10%  Similarity=-0.030  Sum_probs=67.5

Q ss_pred             CCCC---EEEEeccCceEEEEeccCCeeEEEeecCc-------------cce--------------------------EE
Q 021484          158 PNDE---YVMSGSDCGHLFIWKKKGGKLVRLMVGDR-------------HVV--------------------------NQ  195 (312)
Q Consensus       158 ~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-------------~~v--------------------------~~  195 (312)
                      .+|+   .++.++.+|.++++|..+++.+...+...             .++                          ..
T Consensus       311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  390 (571)
T 2ad6_A          311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV  390 (571)
T ss_dssp             ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence            3664   57788999999999999999877654221             111                          23


Q ss_pred             EEEcCCCCeEEEEe-------------------------------------CCCcEEEccCCCCCCC-CCCCChhhhhhh
Q 021484          196 LEPHPHIPMFATCG-------------------------------------IEKTVKLWAPMPTDFP-PLPDNAEKIMKA  237 (312)
Q Consensus       196 ~~~~p~~~~l~t~~-------------------------------------~d~~i~iwd~~~~~~~-~~~~~~~~~~~~  237 (312)
                      ++++|+...+....                                     .++.|..||+.+++.. .+. ....... 
T Consensus       391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~-~~~~~~~-  468 (571)
T 2ad6_A          391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW-EKFAAWG-  468 (571)
T ss_dssp             CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE-ESSCCCS-
T ss_pred             ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEec-CCCCccc-
Confidence            57788777765543                                     3478999999887631 111 1111111 


Q ss_pred             hccCCCCceeEEecCCceEEEEEecccCc
Q 021484          238 NKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       238 ~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      ......+..++.++.|+.++.+|.++...
T Consensus       469 ~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          469 GTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             BCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             eeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence            11122345677789999999999877643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.85  E-value=0.0067  Score=56.13  Aligned_cols=165  Identities=7%  Similarity=0.044  Sum_probs=105.1

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  109 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  109 (312)
                      ...|.++...+++ . |..|+.+ -|.+|+..+++.........        ....-....|.++...++|.+-+++.++
T Consensus       262 ~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~--------~~~~l~~~~i~~i~~D~~g~lWigt~~~  330 (795)
T 4a2l_A          262 SNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSSNPV--------ENGSLSQRSVRSIFMDSQGGMWLGTYFG  330 (795)
T ss_dssp             CSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECCCTT--------STTSCSSSCEEEEEECTTSCEEEEESSS
T ss_pred             CCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEecCCC--------CCCCCCCCcEEEEEEeCCcCEEEEECCC
Confidence            3569999999887 4 4445555 58889987765321100000        0001124579999999999988877778


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEec-----ccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-----HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                      -|..|+..+.                 ....+..     ......|.++.. +.++++ ..|+.++-|..|+..+++...
T Consensus       331 Gl~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~V~~i~~-d~~g~l-WiGt~~~Gl~~~~~~~~~~~~  391 (795)
T 4a2l_A          331 GLNYYHPIRN-----------------RFKNIRNIPYKNSLSDNVVSCIVE-DKDKNL-WIGTNDGGLNLYNPITQRFTS  391 (795)
T ss_dssp             CEEEECGGGG-----------------SSEEECCCTTSSSCSCSSEEEEEE-CTTSCE-EEEESSSCEEEECTTTCCEEE
T ss_pred             CeEEeCCCcc-----------------cceEEcCCCCCCCCCCCeeEEEEE-CCCCCE-EEEECCCCeEEEcCCCCcEEE
Confidence            8888887653                 1111211     001123888887 777764 457777789999988765433


Q ss_pred             Eeec--------CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          185 LMVG--------DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       185 ~~~~--------~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      ....        ....|.++...+++..|-.|+.++-|..||..++..
T Consensus       392 ~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~  439 (795)
T 4a2l_A          392 YTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV  439 (795)
T ss_dssp             ECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred             EecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence            2211        135688999888888455566667799999887654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.83  E-value=0.00052  Score=63.09  Aligned_cols=112  Identities=9%  Similarity=0.007  Sum_probs=73.5

Q ss_pred             cEEEEEEc-cCCCeEEEe-c-CC----cEEEEEcCCC-cCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCC
Q 021484           90 HITGLAYS-NTSELLISY-N-DE----LVYLFEKNMG-LGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE  161 (312)
Q Consensus        90 ~i~~~~~~-~~~~~l~s~-~-d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~  161 (312)
                      .+...+|| |+|++|+.+ . +|    .|+++|+.++ .               .....+..     ....++| +|+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~---------------~l~~~~~~-----~~~~~~W-spDg~  233 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ---------------TIADKVSG-----TNGEIVW-GPDHT  233 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC---------------CCCCCEEE-----ECSCCEE-CSSTT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE---------------eCCccccC-----ceeeEEE-ecCCC
Confidence            67889999 999977754 2 33    4999999775 2               11111211     1346788 99998


Q ss_pred             EEEEeccC-----ceEEEEeccCCee--EEEeec-CccceEEEEEcCCCCeEEEEe---CCCcEEEccCCCC
Q 021484          162 YVMSGSDC-----GHLFIWKKKGGKL--VRLMVG-DRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPT  222 (312)
Q Consensus       162 ~l~~~~~d-----g~v~iwd~~~~~~--~~~~~~-~~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~  222 (312)
                      .|+....+     ..|+.+++.+++.  ...+.. .......+.|+|+|++|+..+   ....|.++|+.+.
T Consensus       234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          234 SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            88776654     3688888877642  233322 223456789999999876655   2346888888765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.77  E-value=0.0098  Score=53.33  Aligned_cols=180  Identities=9%  Similarity=-0.072  Sum_probs=103.9

Q ss_pred             CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe-EEEe-cCCcEEEEEcCCCcCCCCCcCC
Q 021484           51 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LISY-NDELVYLFEKNMGLGPSPLSLS  128 (312)
Q Consensus        51 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~  128 (312)
                      ....|+..++.+...              ...+....-..+..++|++.+.. +.+- .++.|+.+++...         
T Consensus        13 ~~~~I~~i~l~~~~~--------------~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~---------   69 (628)
T 4a0p_A           13 RRADIRRISLETNNN--------------NVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS---------   69 (628)
T ss_dssp             ETTEEEEEESSCTTC--------------EEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------
T ss_pred             eCCcEEEEECCCCCc--------------ceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC---------
Confidence            557899899875431              01111112345789999997664 4443 5889999998754         


Q ss_pred             cccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEE
Q 021484          129 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFAT  207 (312)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t  207 (312)
                             .....+.....  ....+++ ++. +++.++-...+.|.+.++........+...-.....++++|....|..
T Consensus        70 -------~~~~v~~~g~~--~P~GlAv-D~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~  139 (628)
T 4a0p_A           70 -------ALEHVVEFGLD--YPEGMAV-DWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYW  139 (628)
T ss_dssp             -------SCEEEECSSCS--CCCEEEE-ETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEE
T ss_pred             -------CcEEEEeCCCC--CcceEEE-EeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEE
Confidence                   22222221112  2677887 654 455566667789999998754332223233356789999996666554


Q ss_pred             Ee--CCCcEEEccCCCCCCCCCCCChhhhhhhhccCC-CCceeEEecCCceEEEEEeccc
Q 021484          208 CG--IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       208 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ..  ..+.|...++.+.....+.......... .... ++.+.++-...+.|...++...
T Consensus       140 tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~Gl-alD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          140 TEWGGKPKIDRAAMDGSERTTLVPNVGRANGL-TIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEECSCSSEEEE-EEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             eCCCCCCEEEEEeCCCCceEEEECCCCCcceE-EEccccCEEEEEECCCCEEEEEcCCCC
Confidence            44  3567877877765543222111111111 1233 3556666677777887777554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.75  E-value=0.002  Score=55.01  Aligned_cols=153  Identities=12%  Similarity=0.135  Sum_probs=92.4

Q ss_pred             ceEEEEEcCC--CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484           32 RLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  109 (312)
Q Consensus        32 ~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  109 (312)
                      ....++|+|+  +.+++++ ...+.|+.+++.++++..               + .........++++++|.++++...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~---------------~-~~~~~~P~giavd~dG~lyVad~~~  202 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI---------------K-TTNIGQCADVNFTLNGDMVVVDDQS  202 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE---------------E-CCCCSCEEEEEECTTCCEEEEECCS
T ss_pred             CCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE---------------e-ecCCCCccEEEECCCCCEEEEcCCC
Confidence            4678999995  3244444 333899999998776321               1 1123457899999999966664321


Q ss_pred             -----cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEeccCCeeE
Q 021484          110 -----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       110 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                           .+..++.....               .....+. ...  ....+++ ++ ++.+.++-..++.|+.++..++...
T Consensus       203 ~~~~~gv~~~~~~~~~---------------~~~~~~~-~~~--~P~giav-d~~~G~lyv~d~~~~~V~~~d~~~g~~~  263 (433)
T 4hw6_A          203 SDTNTGIYLFTRASGF---------------TERLSLC-NAR--GAKTCAV-HPQNGKIYYTRYHHAMISSYDPATGTLT  263 (433)
T ss_dssp             CTTSEEEEEECGGGTT---------------CCEEEEE-ECS--SBCCCEE-CTTTCCEEECBTTCSEEEEECTTTCCEE
T ss_pred             CcccceEEEEECCCCe---------------ecccccc-ccC--CCCEEEE-eCCCCeEEEEECCCCEEEEEECCCCeEE
Confidence                 13333332210               0001222 111  2567888 78 6766666667889999999877663


Q ss_pred             EEe-ec-CccceEEEEEcCCCCe-EEEEeCCCcEEEccCC
Q 021484          184 RLM-VG-DRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPM  220 (312)
Q Consensus       184 ~~~-~~-~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~  220 (312)
                      ..+ .. .......++|+|+++. +++-...+.|+.+++.
T Consensus       264 ~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          264 EEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             EEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            333 21 1223356999999995 4455567889997765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.71  E-value=0.0095  Score=54.99  Aligned_cols=160  Identities=12%  Similarity=0.073  Sum_probs=101.9

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  109 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  109 (312)
                      ...|.++...+++ . |..|+.++-+..++..+++....          ...   ......|.++...++|.+.+++. +
T Consensus       406 ~~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~~----------~~~---~~~~~~v~~i~~d~~g~lwigt~-~  469 (781)
T 3v9f_A          406 SNSVLCSLKDSEG-N-LWFGTYLGNISYYNTRLKKFQII----------ELE---KNELLDVRVFYEDKNKKIWIGTH-A  469 (781)
T ss_dssp             CSBEEEEEECTTS-C-EEEEETTEEEEEECSSSCEEEEC----------CST---TTCCCCEEEEEECTTSEEEEEET-T
T ss_pred             CcceEEEEECCCC-C-EEEEeccCCEEEEcCCCCcEEEe----------ccC---CCCCCeEEEEEECCCCCEEEEEC-C
Confidence            4578999988877 4 44567667788899877653211          000   11245788999888888776665 6


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc----CCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR----NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                      -|..|+..++                +. ..+....    ....|.++.. ++++.+.+ |+.++-|..+|..+++.. .
T Consensus       470 Gl~~~~~~~~----------------~~-~~~~~~~~~~~~~~~i~~i~~-d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~  529 (781)
T 3v9f_A          470 GVFVIDLASK----------------KV-IHHYDTSNSQLLENFVRSIAQ-DSEGRFWI-GTFGGGVGIYTPDMQLVR-K  529 (781)
T ss_dssp             EEEEEESSSS----------------SC-CEEECTTTSSCSCSCEEEEEE-CTTCCEEE-EESSSCEEEECTTCCEEE-E
T ss_pred             ceEEEeCCCC----------------eE-EecccCcccccccceeEEEEE-cCCCCEEE-EEcCCCEEEEeCCCCeEE-E
Confidence            6889998765                22 1221111    0133888887 77777655 444445778998766543 3


Q ss_pred             eec----CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC
Q 021484          186 MVG----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP  226 (312)
Q Consensus       186 ~~~----~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~  226 (312)
                      +..    ....|.++...++|.+.++.. +|.|..||..+.+...
T Consensus       530 ~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~  573 (781)
T 3v9f_A          530 FNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV  573 (781)
T ss_dssp             ECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE
T ss_pred             ccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE
Confidence            321    134688998888888765554 6665899988776533

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.71  E-value=0.0047  Score=53.28  Aligned_cols=163  Identities=15%  Similarity=0.239  Sum_probs=94.3

Q ss_pred             ceEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE-------ccCCC-e
Q 021484           32 RLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-------SNTSE-L  102 (312)
Q Consensus        32 ~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~-~  102 (312)
                      ....|+|+|. +.+++++-...+.|++.|+.++.+....          .  .-.........|+|       +++|. +
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~----------~--~~~~~~~~p~~ia~~~~~~~~d~~G~~l  207 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL----------N--INTIPTNRIRSIAFNKKIEGYADEAEYM  207 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE----------C--CTTSSCSBEEEEEECCCBTTTBCTTCEE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE----------c--cCccccCCCcEEEEeecccccCCCCCEE
Confidence            3568999994 4356666555577999998877642110          0  00112345889999       99998 4


Q ss_pred             EEEec-CC------cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEE
Q 021484          103 LISYN-DE------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFI  174 (312)
Q Consensus       103 l~s~~-d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~i  174 (312)
                      +++.. ++      .|.+++..... .         +......+.+....   ....++. +| ++.++++-..++.|+.
T Consensus       208 yvad~~~~~~~~~~~V~~i~r~~~G-~---------~~~~~~~~~v~~~~---~p~giav-dp~~g~LYvtd~~~g~V~r  273 (496)
T 3kya_A          208 IVAIDYDGKGDESPSVYIIKRNADG-T---------FDDRSDIQLIAAYK---QCNGATI-HPINGELYFNSYEKGQVFR  273 (496)
T ss_dssp             EEEECCCTTGGGEEEEEEEECCTTS-C---------CSTTSCEEEEEEES---CCCCEEE-CTTTCCEEEEETTTTEEEE
T ss_pred             EEEeCCCCCcccCceEEEEecCCCC-c---------eeecccceeeccCC---CceEEEE-cCCCCeEEEEECCCCEEEE
Confidence            44443 32      26666644310 0         00000002222211   1456777 77 4555667778889999


Q ss_pred             Eecc-------CCee-----------EEE-ee-cCccceEEEEEcCCCCe-EEEEeCCCcEEEccCC
Q 021484          175 WKKK-------GGKL-----------VRL-MV-GDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPM  220 (312)
Q Consensus       175 wd~~-------~~~~-----------~~~-~~-~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~  220 (312)
                      +|+.       ++..           ... +. ......+.++|+|+++. +++-.....|+.++..
T Consensus       274 ~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          274 LDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             ECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            9987       5543           122 22 12345678999999996 4444567788886643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.70  E-value=0.00051  Score=62.48  Aligned_cols=160  Identities=11%  Similarity=-0.009  Sum_probs=89.5

Q ss_pred             cEEEEEEccCCCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEe
Q 021484           90 HITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSG  166 (312)
Q Consensus        90 ~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~  166 (312)
                      .+..++|.+.+..|..+  ..+.|+.+++.+....            ......+....  .....+++ ++ .++++++-
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~------------~~~~~~i~~~~--~~P~glav-D~~~g~LY~tD  471 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------SSYDTVISRDI--QAPDGLAV-DWIHSNIYWTD  471 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-------------CCCCCBCCSCC----CCCEEC-CCSSSBCEECC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCC------------cceEEEEeCCC--CCcceEEE-EeeCCcEEEEe
Confidence            45678999877655544  4788999998751000            01111111111  11456777 64 45555555


Q ss_pred             ccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe-C-CCcEEEccCCCCCCCCCCCChhhhhhhhccCC-C
Q 021484          167 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-I-EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR-E  243 (312)
Q Consensus       167 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~  243 (312)
                      ...+.|.++++........+.........++++|.+..|+.+. . .+.|..+++.+.....+....-....-..+.+ .
T Consensus       472 ~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~  551 (699)
T 1n7d_A          472 SVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS  551 (699)
T ss_dssp             TTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTT
T ss_pred             ccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccC
Confidence            6678999999875544333333334567899999766544433 2 37888888776543222111101111122443 4


Q ss_pred             CceeEEecCCceEEEEEeccc
Q 021484          244 DHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       244 ~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      +.+.++-+....|..+++...
T Consensus       552 ~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          552 GRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             CCEEEEETTTTEEEEECSSSS
T ss_pred             CEEEEEecCCCeEEEEccCCC
Confidence            566777777788888887543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.69  E-value=0.001  Score=60.24  Aligned_cols=56  Identities=9%  Similarity=-0.029  Sum_probs=42.6

Q ss_pred             cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          168 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       168 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      .+|.|..||+.+++.+-....+. ++....+...+.+++.++.|+.|+.||.+++++
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence            34889999999999887765433 333334455778888899999999999998874

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.67  E-value=0.016  Score=47.28  Aligned_cols=156  Identities=6%  Similarity=-0.020  Sum_probs=95.6

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-c-C
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-N-D  108 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~-d  108 (312)
                      ....+++.+.+++++.+-...+.|.++++....               ...+..........+++.|.+. ++.+- . .
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---------------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~  144 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL---------------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEV  144 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---------------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSS
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---------------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence            355788887554677776777889999987432               1111122345578999998655 44443 2 5


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEE-EEeccCceEEEEeccCCeeEEEe
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      +.|..+++...                 ....+. ...  .....+++ ++++..| ++-+..+.|..+|+........+
T Consensus       145 ~~I~r~~~dG~-----------------~~~~~~~~~l--~~Pnglav-d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~  204 (318)
T 3sov_A          145 PKIERAGMDGS-----------------SRFIIINSEI--YWPNGLTL-DYEEQKLYWADAKLNFIHKSNLDGTNRQAVV  204 (318)
T ss_dssp             CEEEEEETTSC-----------------SCEEEECSSC--SCEEEEEE-ETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CEEEEEEcCCC-----------------CeEEEEECCC--CCccEEEE-eccCCEEEEEECCCCEEEEEcCCCCceEEEe
Confidence            78888887643                 222332 222  23688999 7765555 45566789999998743332222


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      .........+++. .+..+.+-...+.|..++..+++
T Consensus       205 ~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          205 KGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             CSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             cCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCC
Confidence            3233456677775 33445555567889999886554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.66  E-value=0.0015  Score=59.00  Aligned_cols=102  Identities=10%  Similarity=-0.059  Sum_probs=59.3

Q ss_pred             eEEEEecCCCCEEEEeccCc-----------eEEEEeccCCeeEEEe--ecCccce-EEEEEcCCCCeEEEEeCC-----
Q 021484          151 KGVNFFGPNDEYVMSGSDCG-----------HLFIWKKKGGKLVRLM--VGDRHVV-NQLEPHPHIPMFATCGIE-----  211 (312)
Q Consensus       151 ~~v~~~s~~~~~l~~~~~dg-----------~v~iwd~~~~~~~~~~--~~~~~~v-~~~~~~p~~~~l~t~~~d-----  211 (312)
                      .++.|...++++++.|+.++           .|.+||..+.+.....  ..+..+. .+++..|++++++.|+.+     
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~  481 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  481 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence            44544123678888887543           6888888876654432  2222222 345667899999999854     


Q ss_pred             ------CcEEEccCCCCCCCCCCCC--hhhhhhhhccCCCCceeEEecC
Q 021484          212 ------KTVKLWAPMPTDFPPLPDN--AEKIMKANKQGREDHSRITLTP  252 (312)
Q Consensus       212 ------~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~  252 (312)
                            ..+.+||+.+.+...+...  ...-...+...++++.++.|+.
T Consensus       482 ~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          482 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                  4689999887653222211  1111111223457778888774

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.61  E-value=0.003  Score=56.16  Aligned_cols=135  Identities=12%  Similarity=0.086  Sum_probs=77.3

Q ss_pred             CCCC---EEEEeccCceEEEEeccCCeeEEEeecCc-------------cce----------------------------
Q 021484          158 PNDE---YVMSGSDCGHLFIWKKKGGKLVRLMVGDR-------------HVV----------------------------  193 (312)
Q Consensus       158 ~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-------------~~v----------------------------  193 (312)
                      .+|+   .++.++.+|.++++|..+|+.+..+....             .++                            
T Consensus       331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G  410 (582)
T 1flg_A          331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG  410 (582)
T ss_dssp             SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred             CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence            4663   78889999999999999999886654321             000                            


Q ss_pred             ----EEEEEcCCCCeEEEEe---------------------------------CCCcEEEccCCCCCCC-CCCCChhhhh
Q 021484          194 ----NQLEPHPHIPMFATCG---------------------------------IEKTVKLWAPMPTDFP-PLPDNAEKIM  235 (312)
Q Consensus       194 ----~~~~~~p~~~~l~t~~---------------------------------~d~~i~iwd~~~~~~~-~~~~~~~~~~  235 (312)
                          ..++++|+...++...                                 .+|.|..||+.++++. ... ......
T Consensus       411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~-~~~~~~  489 (582)
T 1flg_A          411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHK-EHLPLW  489 (582)
T ss_dssp             SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEE-ESSCCC
T ss_pred             ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEec-CCCCCc
Confidence                1245666655544432                                 2578999999888641 111 000110


Q ss_pred             hhhccCCCCceeEEecCCceEEEEEecccCccceeEeecCCCc--cCCCCCCCeEEEeecCC
Q 021484          236 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAAD--FESDEEEGETYLLGFSD  295 (312)
Q Consensus       236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~  295 (312)
                      . ......+.+++.++.|+.++.+|.++... .+....+....  ...-+.+|+.|+.-.+.
T Consensus       490 ~-g~~~tagglvf~g~~dg~l~A~D~~tG~~-lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          490 A-GVLATAGNLVFTGTGDGYFKAFDAKSGKE-LWKFQTGSGIVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             S-CCEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             c-cceEeCCCEEEEECCCCcEEEEECCCCCE-EEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence            0 00112356788899999999999877743 34322221111  01112466677765433

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.60  E-value=0.0075  Score=53.71  Aligned_cols=135  Identities=12%  Similarity=0.083  Sum_probs=76.7

Q ss_pred             CCC---CEEEEeccCceEEEEeccCCeeEEEeecCc-------------cce--------------------------EE
Q 021484          158 PND---EYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-------------HVV--------------------------NQ  195 (312)
Q Consensus       158 ~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-------------~~v--------------------------~~  195 (312)
                      .+|   ..++.++.+|.++++|..+|+.+.......             .++                          ..
T Consensus       318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  397 (599)
T 1w6s_A          318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGH  397 (599)
T ss_dssp             TTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             cCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCC
Confidence            467   567788999999999999999876654211             111                          13


Q ss_pred             EEEcCCCCeEEEEe---------------------------------------CCCcEEEccCCCCCCC-CCCCChhhhh
Q 021484          196 LEPHPHIPMFATCG---------------------------------------IEKTVKLWAPMPTDFP-PLPDNAEKIM  235 (312)
Q Consensus       196 ~~~~p~~~~l~t~~---------------------------------------~d~~i~iwd~~~~~~~-~~~~~~~~~~  235 (312)
                      ++++|+..+++...                                       .+|.|..||+.++++. ... ......
T Consensus       398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~-~~~~~~  476 (599)
T 1w6s_A          398 DSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVW  476 (599)
T ss_dssp             CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCC
T ss_pred             ccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEec-CCCCcc
Confidence            56677665544321                                       3467888888887631 110 000010


Q ss_pred             hhhccCCCCceeEEecCCceEEEEEecccCccceeEeecCCC--ccCCCCCCCeEEEeecCC
Q 021484          236 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAA--DFESDEEEGETYLLGFSD  295 (312)
Q Consensus       236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~  295 (312)
                      . ......+..++.++.|+.++.+|.++.. ..|....+...  ....-+.+|++|+.-.+.
T Consensus       477 ~-g~~~tagg~vf~gt~dg~l~A~D~~tG~-~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G  536 (599)
T 1w6s_A          477 G-GTMATAGDLVFYGTLDGYLKARDSDTGD-LLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG  536 (599)
T ss_dssp             S-BCEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             C-cceEecCCEEEEECCCCeEEEEECCCCC-EEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence            0 0011245677889999999999988774 34432222111  111113456677765433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.59  E-value=0.0046  Score=52.83  Aligned_cols=114  Identities=11%  Similarity=0.091  Sum_probs=70.6

Q ss_pred             cEEEEEEcc-CCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE-EEe
Q 021484           90 HITGLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSG  166 (312)
Q Consensus        90 ~i~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l-~~~  166 (312)
                      ....++++| +|.++++. .++.|+.++..++                .....+...........++| +|++++| ++-
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g----------------~~~~~~~~~~~~~~~~~ia~-dpdG~~LYvad  291 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATG----------------TLTEEEVMMDTKGSNFHIVW-HPTGDWAYIIY  291 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTC----------------CEEEEEEECSCCSSCEEEEE-CTTSSEEEEEE
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCC----------------eEEEEEeccCCCCCcccEEE-eCCCCEEEEEe
Confidence            345688999 67766665 5888999998755                22122211111111346998 9999855 455


Q ss_pred             ccCceEEEEecc--CCee--EEEeecC---------------ccceEEEEE---------cCCCCeEEEEeCCCcEEEcc
Q 021484          167 SDCGHLFIWKKK--GGKL--VRLMVGD---------------RHVVNQLEP---------HPHIPMFATCGIEKTVKLWA  218 (312)
Q Consensus       167 ~~dg~v~iwd~~--~~~~--~~~~~~~---------------~~~v~~~~~---------~p~~~~l~t~~~d~~i~iwd  218 (312)
                      ...+.|+.+++.  ++..  ...+.+.               -.....+++         .+++.++++-.....|+.++
T Consensus       292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence            567899998865  2321  1122111               123567888         67777777777778999998


Q ss_pred             CC
Q 021484          219 PM  220 (312)
Q Consensus       219 ~~  220 (312)
                      ..
T Consensus       372 ~~  373 (433)
T 4hw6_A          372 PE  373 (433)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.59  E-value=0.0054  Score=56.62  Aligned_cols=159  Identities=9%  Similarity=0.049  Sum_probs=99.2

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCc
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL  110 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~  110 (312)
                      ..|.++...+++  .|..|+.++-|..|+..++.....          ....  ......|.++...++|.+.++..++-
T Consensus       363 ~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~----------~~~~--~~~~~~v~~i~~d~~g~lWigt~~~G  428 (781)
T 3v9f_A          363 KVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIYN----------KENR--ELLSNSVLCSLKDSEGNLWFGTYLGN  428 (781)
T ss_dssp             SCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-----------------CCCSBEEEEEECTTSCEEEEETTEE
T ss_pred             cceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEc----------cCCC--CCCCcceEEEEECCCCCEEEEeccCC
Confidence            468899988877  355666667788899876542111          0000  12245789999888888887766677


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEec-ccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  189 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  189 (312)
                      |..++..++                + ...+.. ......|.++.. .+++.+.+ |+. +-|..+|..+++........
T Consensus       429 l~~~~~~~~----------------~-~~~~~~~~~~~~~v~~i~~-d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~  488 (781)
T 3v9f_A          429 ISYYNTRLK----------------K-FQIIELEKNELLDVRVFYE-DKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTS  488 (781)
T ss_dssp             EEEECSSSC----------------E-EEECCSTTTCCCCEEEEEE-CTTSEEEE-EET-TEEEEEESSSSSCCEEECTT
T ss_pred             EEEEcCCCC----------------c-EEEeccCCCCCCeEEEEEE-CCCCCEEE-EEC-CceEEEeCCCCeEEecccCc
Confidence            888887654                1 111211 011133888877 77776554 444 56889998876543322212


Q ss_pred             -----ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          190 -----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       190 -----~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                           ...|.++...++|.+.+.. .++-|..|+..++..
T Consensus       489 ~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~  527 (781)
T 3v9f_A          489 NSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLV  527 (781)
T ss_dssp             TSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEE
T ss_pred             ccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeE
Confidence                 3578899998888876544 334477788776643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.47  E-value=0.025  Score=45.66  Aligned_cols=148  Identities=8%  Similarity=0.017  Sum_probs=83.0

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--ecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--cCC
Q 021484           34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCH--WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDE  109 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~  109 (312)
                      ..++..+.+ ..+++-..++.|..+|..+++  +....    ..  ... ......-.....+  +++++.|..+  ..+
T Consensus       120 ~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~----~~--~~~-~~~~~~~~~pngi--s~dg~~lyv~d~~~~  189 (306)
T 2p4o_A          120 NGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEH----PM--LAR-SNSESVFPAANGL--KRFGNFLYVSNTEKM  189 (306)
T ss_dssp             EEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEEC----GG--GSC-SSTTCCSCSEEEE--EEETTEEEEEETTTT
T ss_pred             CcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEEC----Cc--ccc-ccccCCCCcCCCc--CcCCCEEEEEeCCCC
Confidence            344444544 455555568888888876542  11000    00  000 0001111234455  7888754443  488


Q ss_pred             cEEEEEcCC-CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE--Ee
Q 021484          110 LVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--LM  186 (312)
Q Consensus       110 ~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~  186 (312)
                      .|+.|++.. +.      +        .....+... .  ....+++ +++|+++++....+.|.+++.. ++...  .+
T Consensus       190 ~I~~~~~~~~g~------~--------~~~~~~~~~-~--~P~gi~v-d~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~  250 (306)
T 2p4o_A          190 LLLRIPVDSTDK------P--------GEPEIFVEQ-T--NIDDFAF-DVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA  250 (306)
T ss_dssp             EEEEEEBCTTSC------B--------CCCEEEEES-C--CCSSEEE-BTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred             EEEEEEeCCCCC------C--------CccEEEecc-C--CCCCeEE-CCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence            999999864 20      0        111222211 1  2567888 8999887777778899999975 65532  23


Q ss_pred             ecCccceEEEEEc---CCCCeEEEEeC
Q 021484          187 VGDRHVVNQLEPH---PHIPMFATCGI  210 (312)
Q Consensus       187 ~~~~~~v~~~~~~---p~~~~l~t~~~  210 (312)
                      ......+++++|.   |+++.|..++.
T Consensus       251 ~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          251 EQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             GGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             ccccCCceEEEEecccCCCCEEEEECC
Confidence            3333567899998   88777665553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.46  E-value=0.021  Score=52.50  Aligned_cols=161  Identities=11%  Similarity=-0.015  Sum_probs=91.0

Q ss_pred             CccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEE
Q 021484           88 NIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVM  164 (312)
Q Consensus        88 ~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~  164 (312)
                      ...+..|+|.+... ++.+- ..+.|+.+++.....            .......+.....  ....|++ ++.+ ++.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~------------~~~~~~vi~~~l~--~P~GLAv-D~~~~~LY~  487 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------------VSSYDTVISRDIQ--APDGLAV-DWIHSNIYW  487 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------CEEEECSSCS--CCCEEEE-ETTTTEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCC------------CcceeEEEecCCC--Ccceeee-eecCCcEEE
Confidence            45678899998655 44453 478899998865200            0011122221222  2678888 6655 5555


Q ss_pred             EeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe-C-CCcEEEccCCCCCCCCCCC-ChhhhhhhhccC
Q 021484          165 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-I-EKTVKLWAPMPTDFPPLPD-NAEKIMKANKQG  241 (312)
Q Consensus       165 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~  241 (312)
                      +-...+.|.+.++........+.........|+++|.+..|..+. . .+.|...++.+.....+.. .......++ +.
T Consensus       488 tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLa-vD  566 (791)
T 3m0c_C          488 TDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT-LD  566 (791)
T ss_dssp             EETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEE-EE
T ss_pred             EecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEE-Ee
Confidence            666788999999975544333333445678999999866655444 2 3678888887654322211 111111111 22


Q ss_pred             -CCCceeEEecCCceEEEEEeccc
Q 021484          242 -REDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       242 -~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                       .++.+.++-.....|...++...
T Consensus       567 ~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          567 LLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cCCCeEEEEeCCCCcEEEEecCCC
Confidence             24556666666677777776544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.39  E-value=0.019  Score=46.98  Aligned_cols=152  Identities=13%  Similarity=0.132  Sum_probs=88.6

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEE-EEc--cCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARV-YDI--RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~i-wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      +...+..+++.|++ .+++.+. +|.+.. .|-  .+.+               ..  .......+..+++.+++.+++.
T Consensus       161 ~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~gG~tW~---------------~~--~~~~~~~~~~~~~~~~g~~~~~  221 (327)
T 2xbg_A          161 AIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEPGQTAWE---------------PH--NRTTSRRLHNMGFTPDGRLWMI  221 (327)
T ss_dssp             CCCCEEEEEECTTS-CEEEEET-TSSEEEEECTTCSSCE---------------EE--ECCSSSCEEEEEECTTSCEEEE
T ss_pred             CCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCCCCCcee---------------EC--CCCCCCccceeEECCCCCEEEE
Confidence            45578899999987 6766664 444433 332  1111               00  0223456888999999988887


Q ss_pred             ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc--cCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484          106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                      +.+|.+++.+...+                +.-..+...  .....+..+.+ .+++..++++. +|.| .+..+.++.-
T Consensus       222 ~~~G~~~~s~~D~G----------------~tW~~~~~~~~~~~~~~~~v~~-~~~~~~~~~g~-~g~i-~~S~DgG~tW  282 (327)
T 2xbg_A          222 VNGGKIAFSDPDNS----------------ENWGELLSPLRRNSVGFLDLAY-RTPNEVWLAGG-AGAL-LCSQDGGQTW  282 (327)
T ss_dssp             ETTTEEEEEETTEE----------------EEECCCBCTTSSCCSCEEEEEE-SSSSCEEEEES-TTCE-EEESSTTSSC
T ss_pred             eCCceEEEecCCCC----------------CeeEeccCCcccCCcceEEEEe-cCCCEEEEEeC-CCeE-EEeCCCCccc
Confidence            88888887753222                110001100  01112788888 77777666654 6766 4555556544


Q ss_pred             EEeec---CccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          184 RLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       184 ~~~~~---~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                      ..+..   ....++.+.|.+++. +++++.+|.|.-++-
T Consensus       283 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          283 QQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             EECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             EEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            44432   235678888875544 566677898877664

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.38  E-value=0.0095  Score=52.95  Aligned_cols=55  Identities=13%  Similarity=-0.087  Sum_probs=39.3

Q ss_pred             CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          169 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       169 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      +|.|..||+.+++.+-+...+. ++..-.....+..++.++.|+.++.||.+++++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence            6889999999999876665332 222111222466777799999999999998874

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.32  E-value=0.027  Score=42.78  Aligned_cols=154  Identities=10%  Similarity=-0.009  Sum_probs=83.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccC-CCccEEEEEEccCCCeEEEecCCc
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-NNIHITGLAYSNTSELLISYNDEL  110 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~d~~  110 (312)
                      .+.+++|+|++ .+.++  .+|.++-.+..+.+.         ...+.....+.. --..-.++.|.|+|.+.++ .||.
T Consensus        42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~---------~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~  108 (236)
T 1tl2_A           42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN---------DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDK  108 (236)
T ss_dssp             TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT---------CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTE
T ss_pred             cceeEEECCCc-cEEEE--eCCeEEEECCCCCCc---------ccccccccEecccccccceEEEECCCCCEEEe-CCCE
Confidence            57799999987 66666  678776666544320         000100000000 0011368899999998887 7799


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe------eEE
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK------LVR  184 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~------~~~  184 (312)
                      |+-++..+....      .|     .-....-+......+..|.+ .|+|.+.+..  |+.++-....++.      ...
T Consensus       109 iyr~~pP~~~~~------~W-----l~~a~~vg~~gw~~~~~lff-~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~  174 (236)
T 1tl2_A          109 LYKASPPQSDTD------NW-----IARATEVGSGGWSGFKFLFF-HPNGYLYAVH--GQQFYKALPPVSNQDNWLARAT  174 (236)
T ss_dssp             EEEESCCCSTTC------CH-----HHHSEEEECSSGGGEEEEEE-CTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCE
T ss_pred             EEEeCCCcCCCC------ce-----eccccEeccCCCCceEEEEE-CCCceEEEEe--CCcEEecCCCCCCCcccccccc
Confidence            988875432100      00     00011112222234788887 9999887776  7776544332111      111


Q ss_pred             Eee-cCccceEEEEEcCCCCeEEEEeCCCcE
Q 021484          185 LMV-GDRHVVNQLEPHPHIPMFATCGIEKTV  214 (312)
Q Consensus       185 ~~~-~~~~~v~~~~~~p~~~~l~t~~~d~~i  214 (312)
                      .+- .....-..+.|.|++.+.+..  ++.+
T Consensus       175 ~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          175 KIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             EEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             eeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence            221 233344557799999887666  6633

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.31  E-value=0.0075  Score=54.60  Aligned_cols=153  Identities=10%  Similarity=0.122  Sum_probs=92.3

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec------CCcEEEEEcC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN------DELVYLFEKN  117 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~------d~~i~iwd~~  117 (312)
                      ..++.++.|+.|..+|..+++.+.......+....      .....++  +   .++.+++...      ++.|+.+|..
T Consensus       118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~------~~~~~P~--v---~~~~v~vg~~~~~~~~~g~v~a~D~~  186 (668)
T 1kv9_A          118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPY------SITGAPR--V---VKGKVIIGNGGAEYGVRGFVSAYDAD  186 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSC------BCCSCCE--E---ETTEEEECCBCTTTCCBCEEEEEETT
T ss_pred             CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcc------eecCCCE--E---ECCEEEEeCCCCCcCCCCEEEEEECC
Confidence            46778888999999999999865332211000000      0001111  1   1444444432      4789999998


Q ss_pred             CCcCCCCCcCCcccccCCCCCceEeccc-----------------------------CCceeeEEEEecCCCCEEEEecc
Q 021484          118 MGLGPSPLSLSPEDLQKREEPQVYSGHR-----------------------------NSQTVKGVNFFGPNDEYVMSGSD  168 (312)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~v~~v~~~s~~~~~l~~~~~  168 (312)
                      ++                +.+..+....                             .......+++ ++....++.++.
T Consensus       187 tG----------------~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~-d~~~~~vy~~~~  249 (668)
T 1kv9_A          187 TG----------------KLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAY-DPELDLLYVGTG  249 (668)
T ss_dssp             TC----------------CEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEE-ETTTTEEEEECC
T ss_pred             CC----------------cEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEE-cCCCCEEEEeCC
Confidence            87                3333322100                             0011234677 788888888887


Q ss_pred             Cce-------------------EEEEeccCCeeEEEeec--Cc-------cceEEEEEcCCCC---eEEEEeCCCcEEEc
Q 021484          169 CGH-------------------LFIWKKKGGKLVRLMVG--DR-------HVVNQLEPHPHIP---MFATCGIEKTVKLW  217 (312)
Q Consensus       169 dg~-------------------v~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~p~~~---~l~t~~~d~~i~iw  217 (312)
                      ++.                   |..+|..+|+.+-.++.  |.       .++....+..+++   .++.++.+|.+.++
T Consensus       250 ~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~l  329 (668)
T 1kv9_A          250 NGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL  329 (668)
T ss_dssp             CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEE
Confidence            764                   99999999998877764  22       2222222233664   58888899999999


Q ss_pred             cCCCCCC
Q 021484          218 APMPTDF  224 (312)
Q Consensus       218 d~~~~~~  224 (312)
                      |..++++
T Consensus       330 D~~tG~~  336 (668)
T 1kv9_A          330 DRTNGKL  336 (668)
T ss_dssp             ETTTCCE
T ss_pred             ECCCCCE
Confidence            9988774

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.27  E-value=0.0081  Score=53.28  Aligned_cols=56  Identities=7%  Similarity=-0.106  Sum_probs=40.0

Q ss_pred             cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          168 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       168 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      .+|.|..||+.+++.+-.+.... .+........+..++.++.|+.|+.||.++++.
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence            35889999999999877765332 222222333456777789999999999998874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.23  E-value=0.0044  Score=52.89  Aligned_cols=152  Identities=9%  Similarity=0.049  Sum_probs=89.0

Q ss_pred             cEEEEEEccC--CCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec
Q 021484           90 HITGLAYSNT--SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  167 (312)
Q Consensus        90 ~i~~~~~~~~--~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~  167 (312)
                      ....++++|+  +.++++-..+.|+.+|+.++                 .+..+....  .....++| ++++++|+.+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-----------------~v~~~~~~~--~~P~~ia~-d~~G~~lyvad  197 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-----------------YVSTVYSGL--SKVRTICW-THEADSMIITN  197 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT-----------------EEEEEECCC--SCEEEEEE-CTTSSEEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC-----------------EEEEEecCC--CCcceEEE-eCCCCEEEEEe
Confidence            4578899973  44444443488999998764                 233333222  23789999 89999666554


Q ss_pred             c-C----ceEEEEeccCCeeE--EEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCCCCCCCC-Chhhhhhhh
Q 021484          168 D-C----GHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDFPPLPD-NAEKIMKAN  238 (312)
Q Consensus       168 ~-d----g~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~  238 (312)
                      . .    ..+.+++.. +...  ..+.. ......++++| ++.++++-..++.|..+++.+.....+.. .......-.
T Consensus       198 ~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gi  275 (430)
T 3tc9_A          198 DQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHI  275 (430)
T ss_dssp             CCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEE
T ss_pred             CCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeE
Confidence            3 2    234444433 2211  22322 23456788999 66666666677899999987654311100 000111223


Q ss_pred             ccCCCCc-eeEEecCCceEEEEEecc
Q 021484          239 KQGREDH-SRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       239 ~~~~~~~-~l~s~~~d~~i~i~~~~~  263 (312)
                      .+.++++ ++++-.....|..++...
T Consensus       276 a~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          276 QFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            4566666 667777788888887653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.15  E-value=0.058  Score=42.22  Aligned_cols=166  Identities=13%  Similarity=0.105  Sum_probs=95.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ecCCc
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDEL  110 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~  110 (312)
                      ..-.+++.+++ .++++.-.++.+.++++.....+..      +..................++|+|.++.|.+ .....
T Consensus        71 D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i~~------~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p  143 (255)
T 3qqz_A           71 DLETIEYIGDN-QFVISDERDYAIYVISLTPNSEVKI------LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP  143 (255)
T ss_dssp             SEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCEEE------EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS
T ss_pred             ChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCeeee------eeeeccccccccccCCcceEEEeCCCCEEEEEECcCC
Confidence            45678888877 5666655678899998765431000      0000000001223455789999999864444 44333


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEec-----ccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-----HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  185 (312)
                      ..+|.+....  ..           ..+..+..     ......+..+++.+..+++++.......|.++|.. ++.+..
T Consensus       144 ~~i~~~~g~~--~~-----------~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~  209 (255)
T 3qqz_A          144 IEVYKVNGLL--SS-----------NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGE  209 (255)
T ss_dssp             EEEEEEESTT--CS-----------SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEE
T ss_pred             ceEEEEcccc--cC-----------CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEE
Confidence            3444443110  00           11111110     00111278899955567788888889999999976 666665


Q ss_pred             eecCc---------cceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          186 MVGDR---------HVVNQLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       186 ~~~~~---------~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                      +....         ...-.|+|.|+|++.++ ++-..++.+..
T Consensus       210 ~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          210 MSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             EEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            54321         25688999999986555 66666666654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.13  E-value=0.041  Score=46.18  Aligned_cols=109  Identities=9%  Similarity=0.076  Sum_probs=76.9

Q ss_pred             EEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc--CCceeeEEEEecCCCCEEEEeccCceE
Q 021484           95 AYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVMSGSDCGHL  172 (312)
Q Consensus        95 ~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~s~~~~~l~~~~~dg~v  172 (312)
                      ....+|.-++.+.++.||..++...                ...+.+....  ....+..+.. +|+|.+|+..+. ..|
T Consensus        27 ~~~~n~t~i~~a~~n~iR~~~i~~~----------------~~Yk~L~~~~~i~f~~i~qlvl-SpsG~lLAl~g~-~~V   88 (452)
T 3pbp_A           27 FSSQNGTRIVFIQDNIIRWYNVLTD----------------SLYHSLNFSRHLVLDDTFHVIS-STSGDLLCLFND-NEI   88 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEETTTC----------------SSCEEEECTTTCCCCTTCEEEE-CTTSSEEEEECS-SEE
T ss_pred             EEEcCCCEEEEEECCEEEEEECCCC----------------CcceEEecCcccccCceeEEEE-CCCCCEEEEecC-CeE
Confidence            4456777888888899999998754                3344444331  1123778888 999999998864 577


Q ss_pred             EEEeccCCe------------eEEEeec------CccceEEEEEcCCC---CeEEEEeCCCcEEEccCCC
Q 021484          173 FIWKKKGGK------------LVRLMVG------DRHVVNQLEPHPHI---PMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       173 ~iwd~~~~~------------~~~~~~~------~~~~v~~~~~~p~~---~~l~t~~~d~~i~iwd~~~  221 (312)
                      .|..+..+.            ..+.+..      ...+|..+.|||-+   ..|++-..|++||+||+..
T Consensus        89 ~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A           89 FVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             EEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             EEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            787765221            1223332      24679999999965   5699999999999999986

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.13  E-value=0.065  Score=47.97  Aligned_cols=156  Identities=10%  Similarity=-0.045  Sum_probs=86.7

Q ss_pred             CccEEEEEEccCCCeEE-Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCC-ceEecccCCceeeEEEEecCC-CCEE
Q 021484           88 NIHITGLAYSNTSELLI-SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEP-QVYSGHRNSQTVKGVNFFGPN-DEYV  163 (312)
Q Consensus        88 ~~~i~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~v~~~s~~-~~~l  163 (312)
                      ...+..++|++.+..|. +- ..+.|+.+++...                ... ..+.....  ....+++ ++. +++.
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~----------------~~~~~v~~~~~~--~P~GlAv-D~~~~~ly   99 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT----------------ESVQNVVVSGLL--SPDGLAC-DWLGEKLY   99 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------CEEEECSSCS--CEEEEEE-ETTTTEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCC----------------CceEEEEeCCCC--CcCeEEE-EecCCEEE
Confidence            34578999998766444 43 4788998888653                111 22222212  2788998 774 5555


Q ss_pred             EEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEccCCCCCCCCCCC-Chhhhhhhhcc
Q 021484          164 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQ  240 (312)
Q Consensus       164 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~--~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~  240 (312)
                      ++-...+.|.+.++........+...-.....++++|.+..|..+.  ..+.|...++.+.....+.. ........ ..
T Consensus       100 ~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl-al  178 (619)
T 3s94_A          100 WTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL-TL  178 (619)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE-EE
T ss_pred             EEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE-EE
Confidence            6666788999999875433323323345567899999866654444  24567777766544322211 11111111 12


Q ss_pred             CC-CCceeEEecCCceEEEEEecc
Q 021484          241 GR-EDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       241 ~~-~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      .+ ++.+.++-...+.|...++..
T Consensus       179 d~~~~~LY~aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          179 DYEEQKLYWADAKLNFIHKSNLDG  202 (619)
T ss_dssp             ETTTTEEEEEETTTCCEEEESSSC
T ss_pred             EccCCEEEEEeCCCCeEEEecCCC
Confidence            22 345556666666666666543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.10  E-value=0.089  Score=45.44  Aligned_cols=123  Identities=10%  Similarity=0.074  Sum_probs=65.4

Q ss_pred             EEEEEEccCC-CeEEEe-cCCcEEEEEcC-------CCcCCCCCcCCcccccCCCCCce-EecccCCceeeEEEEecCCC
Q 021484           91 ITGLAYSNTS-ELLISY-NDELVYLFEKN-------MGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNFFGPND  160 (312)
Q Consensus        91 i~~~~~~~~~-~~l~s~-~d~~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~s~~~  160 (312)
                      ...++.+|++ .++++. .++.|+.+|+.       ++....+..  .+.  . ..... +... .......++| +|++
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~--~~~--~-g~~~~l~~~~-~~~~p~~ia~-~p~G  321 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV--KNN--P-NTFKQLFTIA-DPSWEFQIFI-HPTG  321 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG--GGC--T-TTEEEEEECS-SSSCCEEEEE-CTTS
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc--ccc--c-cccceeEecC-CCCCceEEEE-cCCC
Confidence            4577889955 555554 58889999987       441000000  000  0 00111 2111 1122578999 9999


Q ss_pred             CEE-EEeccCceEEEEecc--CCee--EEEeecC---c------------cceE-EEEEc-------CCCCeEEEEeCCC
Q 021484          161 EYV-MSGSDCGHLFIWKKK--GGKL--VRLMVGD---R------------HVVN-QLEPH-------PHIPMFATCGIEK  212 (312)
Q Consensus       161 ~~l-~~~~~dg~v~iwd~~--~~~~--~~~~~~~---~------------~~v~-~~~~~-------p~~~~l~t~~~d~  212 (312)
                      ++| ++-+..+.|+.++..  ++..  ...+-+.   .            .... .+...       +++.++++-....
T Consensus       322 ~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~  401 (496)
T 3kya_A          322 KYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNF  401 (496)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGT
T ss_pred             CEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCC
Confidence            954 455667889986654  3322  1222221   0            1234 44444       4566666666778


Q ss_pred             cEEEccCC
Q 021484          213 TVKLWAPM  220 (312)
Q Consensus       213 ~i~iwd~~  220 (312)
                      .|+.++..
T Consensus       402 rIr~i~~~  409 (496)
T 3kya_A          402 CVRKVTPE  409 (496)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99999854

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.08  E-value=0.022  Score=50.76  Aligned_cols=56  Identities=9%  Similarity=-0.028  Sum_probs=38.7

Q ss_pred             cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          168 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       168 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      ..|.|..||+.+++.+-..+.. .++..-.....+..++.++.|+.|+.||.++++.
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~  506 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence            3588999999999887666422 1111111222566777789999999999999873

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.04  E-value=0.09  Score=43.04  Aligned_cols=119  Identities=5%  Similarity=0.077  Sum_probs=75.0

Q ss_pred             ccEEEEEE--ccC-CC-eEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE
Q 021484           89 IHITGLAY--SNT-SE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  163 (312)
Q Consensus        89 ~~i~~~~~--~~~-~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l  163 (312)
                      ..+..+++  +|. ++ +++. ..+|.+..|++....         ....+.+.++.|....   .+..+.. ++....|
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~---------~g~~~~~lVR~f~lgs---q~Egcvv-Dd~~g~L  194 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADK---------NGYISGKKVRAFKMNS---QTEGMAA-DDEYGRL  194 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECT---------TSCEEEEEEEEEECSS---CEEEEEE-ETTTTEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCC---------CCcccceEEEEecCCC---CcceEEE-cCCCCeE
Confidence            44556777  664 44 3444 458999999884310         0001114556665433   2677777 7888899


Q ss_pred             EEeccCceEEEEecc-----CCeeEEEee-cC-ccceEEEEE--cCCCC-eEEEEe-CCCcEEEccCC
Q 021484          164 MSGSDCGHLFIWKKK-----GGKLVRLMV-GD-RHVVNQLEP--HPHIP-MFATCG-IEKTVKLWAPM  220 (312)
Q Consensus       164 ~~~~~dg~v~iwd~~-----~~~~~~~~~-~~-~~~v~~~~~--~p~~~-~l~t~~-~d~~i~iwd~~  220 (312)
                      +.+-++..|..++..     +++.+..+. ++ ...+..|++  .++++ +|++++ .+.+..+||.+
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            999998888888855     345555543 22 236777877  45556 655555 67899999986

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.00  E-value=0.04  Score=44.19  Aligned_cols=64  Identities=8%  Similarity=0.092  Sum_probs=38.4

Q ss_pred             CCCEEEEeccC-----ceEEEEeccCCeeEEEe--ecCccceEEEEEcCCCCeEEEEeCC-----CcEEEccCCCCCC
Q 021484          159 NDEYVMSGSDC-----GHLFIWKKKGGKLVRLM--VGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDF  224 (312)
Q Consensus       159 ~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~  224 (312)
                      ++++++.|+.+     ..+.+||+.+.+....-  .........+.+  ++++++.|+.+     ..+.+||+.+.+.
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  234 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW  234 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence            57777777654     45889998877654321  111111122222  56677777754     4688999987754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.93  E-value=0.11  Score=42.87  Aligned_cols=164  Identities=9%  Similarity=0.069  Sum_probs=91.2

Q ss_pred             ceEEEEEcCCCCcEEEEE------------eCCCeEEEEEccCCeecCCCCCCCCccccccccc-ccCCCccEEEEEEcc
Q 021484           32 RLNAIVIDPRNPNYFAVG------------GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSN   98 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~   98 (312)
                      ..-+++..|+| ..++++            ..+|.|.++|..+...        ....+..... +....-....+.+.+
T Consensus        51 G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~--------~~~~l~~~g~~~~~~~f~PhGi~~~~  121 (355)
T 3sre_A           51 GSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP--------AVSELEIIGNTLDISSFNPHGISTFI  121 (355)
T ss_dssp             CCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSC--------CEEECEEECSSCCGGGCCEEEEEEEE
T ss_pred             CcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCC--------ceEEEEccCCCCCcCceeeeeeEEEE
Confidence            34567788877 444443            1689999999874320        0111111100 011233566777765


Q ss_pred             --CCC--eEEEe-c--CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec----
Q 021484           99 --TSE--LLISY-N--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS----  167 (312)
Q Consensus        99 --~~~--~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~----  167 (312)
                        ++.  ++++. .  +..+.+|++.....            ....+..+.+.. ......+.+ .++|.+.++..    
T Consensus       122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~------------~~~~~~~~~g~~-~~~pND~~v-~~~G~fyvt~~~~ft  187 (355)
T 3sre_A          122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEK------------SLLHLKTIRHKL-LPSVNDIVA-VGPEHFYATNDHYFI  187 (355)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTT------------EEEEEEEECCTT-CSSEEEEEE-EETTEEEEEESCSCS
T ss_pred             CCCCcEEEEEEECCCCCCeEEEEEEECCCC------------EEEEEeccccCC-CCCCceEEE-eCCCCEEecCCcEeC
Confidence              454  44442 2  56788887754310            001223333322 133788888 78898777654    


Q ss_pred             -------------cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCC
Q 021484          168 -------------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMP  221 (312)
Q Consensus       168 -------------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~  221 (312)
                                   ..|.|+-+|.  ++. ..+...-...+.++|+|+++.|..+. ..+.|..|++..
T Consensus       188 d~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          188 DPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             SHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence                         1355666665  332 22322234568999999998866554 678999999863

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.77  E-value=0.098  Score=42.02  Aligned_cols=185  Identities=11%  Similarity=0.098  Sum_probs=89.5

Q ss_pred             cEEEEEeCC----CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC------CcEE
Q 021484           44 NYFAVGGSD----EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND------ELVY  112 (312)
Q Consensus        44 ~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d------~~i~  112 (312)
                      .+++.|+.+    ..+.+||+.+.++.....            ....... ...+.+  ++++++.+ .+      ..+.
T Consensus        57 ~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~------------~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~  121 (306)
T 3ii7_A           57 VVYILGGSQLFPIKRMDCYNVVKDSWYSKLG------------PPTPRDS-LAACAA--EGKIYTSGGSEVGNSALYLFE  121 (306)
T ss_dssp             EEEEECCBSSSBCCEEEEEETTTTEEEEEEC------------CSSCCBS-CEEEEE--TTEEEEECCBBTTBSCCCCEE
T ss_pred             EEEEEeCCCCCCcceEEEEeCCCCeEEECCC------------CCccccc-eeEEEE--CCEEEEECCCCCCCcEeeeEE
Confidence            688888755    678899998876532211            0011111 112222  55655554 33      3588


Q ss_pred             EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---------CceEEEEeccCCeeE
Q 021484          113 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---------CGHLFIWKKKGGKLV  183 (312)
Q Consensus       113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---------dg~v~iwd~~~~~~~  183 (312)
                      +||..+..         |        ..+........-.+++.  .++++++.|+.         -..+.+||+.+.+..
T Consensus       122 ~~d~~~~~---------W--------~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~  182 (306)
T 3ii7_A          122 CYDTRTES---------W--------HTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT  182 (306)
T ss_dssp             EEETTTTE---------E--------EEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE
T ss_pred             EEeCCCCc---------e--------EeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE
Confidence            88987641         1        11111111111122222  25667777764         345889998877543


Q ss_pred             EEee--cCccceEEEEEcCCCCeEEEEeCC-----CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC---
Q 021484          184 RLMV--GDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD---  253 (312)
Q Consensus       184 ~~~~--~~~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---  253 (312)
                      ..-.  .....-..+.+  ++++++.|+.+     ..+.+||+.+.+...+...............++.+++.++.+   
T Consensus       183 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~  260 (306)
T 3ii7_A          183 ELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVG  260 (306)
T ss_dssp             EECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSS
T ss_pred             ECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCe
Confidence            3211  11111122222  56677777643     468889988875433321111111111111245666666643   


Q ss_pred             --ceEEEEEeccc
Q 021484          254 --VIMHVLRLQRR  264 (312)
Q Consensus       254 --~~i~i~~~~~~  264 (312)
                        ..+.++|+.+.
T Consensus       261 ~~~~~~~yd~~~~  273 (306)
T 3ii7_A          261 RLGHILEYNTETD  273 (306)
T ss_dssp             BCCEEEEEETTTT
T ss_pred             eeeeEEEEcCCCC
Confidence              45666665443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.63  E-value=0.055  Score=43.90  Aligned_cols=156  Identities=8%  Similarity=0.043  Sum_probs=96.2

Q ss_pred             EEEEEccCC-CeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCc-eEec----ccCCceeeEEEEe--cCCCCE
Q 021484           92 TGLAYSNTS-ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSG----HRNSQTVKGVNFF--GPNDEY  162 (312)
Q Consensus        92 ~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~v~~v~~~--s~~~~~  162 (312)
                      .+++|++.. .++++. ..+.|..|+...+                .... .+.+    ......+..+.|.  .+++++
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~----------------~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL   79 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ----------------SHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRL   79 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTC----------------CEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEE
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCC----------------eEEEEecCCccccCCCcceeeEEEEeccCCCCcE
Confidence            367898754 466665 4999999998644                1111 1111    0111125788873  477777


Q ss_pred             EEEec-------------cCceEEEEecc---CCeeEEEeec--C-----------ccceEEEEEcCCCCeEEEEeCC-C
Q 021484          163 VMSGS-------------DCGHLFIWKKK---GGKLVRLMVG--D-----------RHVVNQLEPHPHIPMFATCGIE-K  212 (312)
Q Consensus       163 l~~~~-------------~dg~v~iwd~~---~~~~~~~~~~--~-----------~~~v~~~~~~p~~~~l~t~~~d-~  212 (312)
                      +++..             .+..|..+|+.   +++.+.....  .           .....+++..++|+..++++.- +
T Consensus        80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~  159 (334)
T 2p9w_A           80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP  159 (334)
T ss_dssp             EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC
T ss_pred             EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCC
Confidence            76543             26789999999   7877654431  1           1247899999999999988877 7


Q ss_pred             cEEEccCCCCCCCCC----C-CChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          213 TVKLWAPMPTDFPPL----P-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       213 ~i~iwd~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      .|...+........+    + .....-+.-....+++..|+.....+.+..+|+..
T Consensus       160 ~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          160 AIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            777777765532211    0 01110011223556676666665599999999774

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.60  E-value=0.078  Score=42.47  Aligned_cols=104  Identities=14%  Similarity=0.105  Sum_probs=53.6

Q ss_pred             CCCEEEEeccC-----ceEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC-----CcEEEccCCCCCCCC
Q 021484          159 NDEYVMSGSDC-----GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDFPP  226 (312)
Q Consensus       159 ~~~~l~~~~~d-----g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~~~  226 (312)
                      ++++++.|+.+     ..+.+||+.+.+....  +.........+.+  ++++++.|+.+     ..+.+||+.+.....
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            56777777653     3688999887654332  2211111122222  66777777654     458889988775432


Q ss_pred             CCCChhhhhhhhccCCCCceeEEecCC-----ceEEEEEeccc
Q 021484          227 LPDNAEKIMKANKQGREDHSRITLTPD-----VIMHVLRLQRR  264 (312)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~i~~~~~~  264 (312)
                      +...............++.+++.++.+     ..+.++|+.+.
T Consensus       190 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          190 VTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            211111111111111245566666554     45677776543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.57  E-value=0.12  Score=41.71  Aligned_cols=64  Identities=13%  Similarity=0.055  Sum_probs=38.2

Q ss_pred             CCCEEEEeccC-----ceEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC-----CcEEEccCCCCCC
Q 021484          159 NDEYVMSGSDC-----GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDF  224 (312)
Q Consensus       159 ~~~~l~~~~~d-----g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~  224 (312)
                      ++++++.|+.+     ..+.+||+.+.+....  +.........+.+  ++++++.|+.+     ..+.+||+.+.+.
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence            56777777654     4588999887654322  1111111222333  66677777754     4688999888764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.56  E-value=0.13  Score=41.24  Aligned_cols=64  Identities=13%  Similarity=0.153  Sum_probs=37.6

Q ss_pred             CCCEEEEeccC-------ceEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC-----CcEEEccCCCCCC
Q 021484          159 NDEYVMSGSDC-------GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDF  224 (312)
Q Consensus       159 ~~~~l~~~~~d-------g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~  224 (312)
                      ++++++.|+.+       ..+.+||+.+.+....  +.........+.+  ++++++.|+.+     ..+.+||+.+.+.
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  232 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW  232 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence            56677777643       3588999887754432  1111111122222  56777777754     3688999887754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.53  E-value=0.077  Score=40.30  Aligned_cols=111  Identities=14%  Similarity=-0.008  Sum_probs=65.7

Q ss_pred             ccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc
Q 021484           89 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD  168 (312)
Q Consensus        89 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~  168 (312)
                      ..+..++|+|+|.+.+. .+|.++-.+..+...      ..|.     -..+.-+......-..+.| .++|.+.++  .
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~------~~W~-----~s~t~IG~~Gw~~F~a~~f-D~~G~LYav--~  105 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDN------DNWM-----GRAKKIGNGGWNQFQFLFF-DPNGYLYAV--S  105 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTT------CCHH-----HHCEEEECSCGGGCSEEEE-CTTSCEEEE--E
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCc------cccc-----ccccEecccccccceEEEE-CCCCCEEEe--C
Confidence            36779999999997777 888877766544200      0000     0011111111111367777 899988777  5


Q ss_pred             CceEEEEeccCCeeE------EEe-ecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484          169 CGHLFIWKKKGGKLV------RLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKL  216 (312)
Q Consensus       169 dg~v~iwd~~~~~~~------~~~-~~~~~~v~~~~~~p~~~~l~t~~~d~~i~i  216 (312)
                      ||.|+-++..+...-      ..+ ...-..+..|.+.|+|.+.+..  |+.++-
T Consensus       106 dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          106 KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence            699988875332110      111 1122567899999999988777  777543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.50  E-value=0.15  Score=49.17  Aligned_cols=153  Identities=12%  Similarity=0.132  Sum_probs=90.3

Q ss_pred             ceEEEE---EcCCCCcEEEEEe----------CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc
Q 021484           32 RLNAIV---IDPRNPNYFAVGG----------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN   98 (312)
Q Consensus        32 ~v~~~~---~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   98 (312)
                      .+.+++   |..+...+|++|+          ..|.|++|++..+++.          ....    ....+++++++-- 
T Consensus       830 ~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~----------lv~~----~~v~g~v~al~~~-  894 (1158)
T 3ei3_A          830 YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ----------TVAE----KEVKGAVYSMVEF-  894 (1158)
T ss_dssp             EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE----------EEEE----EEESSCEEEEEEE-
T ss_pred             ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEE----------EEEE----EEcCCcCEEEeee-
Confidence            345544   4333336888876          3588999998744421          1111    2235678887643 


Q ss_pred             CCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec-ccCCceeeEEEEecCCCCEEEEeccCceEEEEec
Q 021484           99 TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK  177 (312)
Q Consensus        99 ~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~  177 (312)
                      +| +|+++...+|++|++...                +.++ ... +-..  +..+.. ...+++++.|..-..|.++..
T Consensus       895 ~g-~Lla~ig~~l~vy~l~~~----------------~~L~-~~~~~~~~--i~~~~l-~~~~~~I~vgD~~~Sv~~~~y  953 (1158)
T 3ei3_A          895 NG-KLLASINSTVRLYEWTTE----------------KELR-TECNHYNN--IMALYL-KTKGDFILVGDLMRSVLLLAY  953 (1158)
T ss_dssp             TT-EEEEEETTEEEEEEECTT----------------SCEE-EEEEECCC--SCEEEE-EEETTEEEEEESSBCEEEEEE
T ss_pred             CC-EEEEEcCCEEEEEECCCC----------------ceEE-EEeecccc--EEEEEE-eccCCEEEEEEhhheEEEEEE
Confidence            34 666677789999999764                3322 111 1111  222222 234788999988777777554


Q ss_pred             --cCCeeEEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          178 --KGGKLVRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       178 --~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                        ..++....-+ .+...++++.+-.+ ..++.+..+|.|.+.....
T Consensus       954 ~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          954 KPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             ETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred             EcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence              3444332222 23456788887654 4677888999999987654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.49  E-value=0.15  Score=42.81  Aligned_cols=134  Identities=10%  Similarity=0.115  Sum_probs=76.9

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCC-C--CCCCcccccccccccCCCccEEEEEEccCCC---eEEE
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI-S--SDTPVDTFCPRHLIGKNNIHITGLAYSNTSE---LLIS  105 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~s  105 (312)
                      .|..+..+|+| .+||..+ +..|.|-.+..+...... .  ..-....+...........+|..+.|+|-+.   .|++
T Consensus        67 ~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           67 DTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             ceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            57789999999 7888775 468999998843211110 0  0001112222222112357899999999763   5555


Q ss_pred             -ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE--eccCceEEEEe
Q 021484          106 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS--GSDCGHLFIWK  176 (312)
Q Consensus       106 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~--~~~dg~v~iwd  176 (312)
                       .+|+.|++||+.... ..+.     .+.+  ....|........|.+++| ..++=.|..  .+..|.|+-.-
T Consensus       145 LtsD~~Ir~yDl~~s~-~~P~-----~L~k--~~~~fg~d~~~~ev~S~~F-g~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQ-EKPI-----VLNK--PNNSFGLDARVNDITDLEF-SKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             EETTSCEEEEETTCTT-SCCE-----EESC--CCSEEESCSSCCCEEEEEE-CTTSSCEEEEECTTSCEEEEES
T ss_pred             EecCCEEEEEEcccCC-CCCc-----chhc--cccccCCCcccceEEEEEE-cCCCcEEEEEecCCCCCEEEEC
Confidence             689999999998631 0000     1111  1112221111133889999 777666666  55888887654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.42  E-value=0.1  Score=42.09  Aligned_cols=104  Identities=9%  Similarity=0.039  Sum_probs=52.9

Q ss_pred             CCCEEEEeccC-----ceEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC-----CcEEEccCCCCCCCC
Q 021484          159 NDEYVMSGSDC-----GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDFPP  226 (312)
Q Consensus       159 ~~~~l~~~~~d-----g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~~~  226 (312)
                      ++++++.|+.+     ..+.+||+.+.+....  +.........+.+  ++.+++.|+.+     ..+.+||+.+.+...
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            56777777643     3588899887654322  1111111122223  56677777654     458889988775332


Q ss_pred             CCCChhhhhhhhccCCCCceeEEecCC-----ceEEEEEeccc
Q 021484          227 LPDNAEKIMKANKQGREDHSRITLTPD-----VIMHVLRLQRR  264 (312)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~i~~~~~~  264 (312)
                      +...............++.+++.++.+     ..+.++|+.+.
T Consensus       199 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             CCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            221111110111111245566666554     45677776543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.34  E-value=0.33  Score=39.51  Aligned_cols=154  Identities=8%  Similarity=-0.047  Sum_probs=84.0

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  109 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  109 (312)
                      +..+..+.+.+++ .+++.+ .++.|.. ....++              .-..........+..+++.+++.+++.+..+
T Consensus       121 ~~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~--------------tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G  183 (327)
T 2xbg_A          121 PGSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGK--------------NWQALVQEAIGVMRNLNRSPSGEYVAVSSRG  183 (327)
T ss_dssp             SSCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTS--------------SEEEEECSCCCCEEEEEECTTSCEEEEETTS
T ss_pred             CCCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCC--------------CCEEeecCCCcceEEEEEcCCCcEEEEECCC
Confidence            4457788877666 566555 4554422 122222              0000112234568899999999888888766


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  188 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  188 (312)
                      .++.-+-..+                ..-..+. ...  ..+..+.+ .+++..++. +.+|.+++.+...++.-..+..
T Consensus       184 ~~~~S~d~gG----------------~tW~~~~~~~~--~~~~~~~~-~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~  243 (327)
T 2xbg_A          184 SFYSTWEPGQ----------------TAWEPHNRTTS--RRLHNMGF-TPDGRLWMI-VNGGKIAFSDPDNSENWGELLS  243 (327)
T ss_dssp             SEEEEECTTC----------------SSCEEEECCSS--SCEEEEEE-CTTSCEEEE-ETTTEEEEEETTEEEEECCCBC
T ss_pred             cEEEEeCCCC----------------CceeECCCCCC--CccceeEE-CCCCCEEEE-eCCceEEEecCCCCCeeEeccC
Confidence            6655432111                1111121 122  23788888 788876554 4578877764332443322221


Q ss_pred             ----CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          189 ----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       189 ----~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                          +...+..+.+.|++..++.+. ++.|. +....+
T Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG  279 (327)
T 2xbg_A          244 PLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGG  279 (327)
T ss_dssp             TTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTT
T ss_pred             CcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCC
Confidence                123578899998877666654 67663 333433

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.21  E-value=0.12  Score=41.53  Aligned_cols=145  Identities=9%  Similarity=0.040  Sum_probs=73.9

Q ss_pred             cEEEEEeC--CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC----CcEEEEEc
Q 021484           44 NYFAVGGS--DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND----ELVYLFEK  116 (312)
Q Consensus        44 ~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d----~~i~iwd~  116 (312)
                      .+++.|+.  ...+.+||..+.++......+            ..... ...+.  .++++++.+ .+    ..+.+||.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p------------~~r~~-~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~   77 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPF------------EKRRD-AACVF--WDNVVYILGGSQLFPIKRMDCYNV   77 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCS------------CCCBS-CEEEE--ETTEEEEECCBSSSBCCEEEEEET
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCC------------cccce-eEEEE--ECCEEEEEeCCCCCCcceEEEEeC
Confidence            56777764  367889999988764321110            11111 11222  255555554 33    56888888


Q ss_pred             CCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC------ceEEEEeccCCeeEEEeec--
Q 021484          117 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC------GHLFIWKKKGGKLVRLMVG--  188 (312)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~--  188 (312)
                      .+.                 .-..+........-.+++.  .++++++.|+.+      ..+.+||..+.+....-..  
T Consensus        78 ~~~-----------------~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~  138 (306)
T 3ii7_A           78 VKD-----------------SWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT  138 (306)
T ss_dssp             TTT-----------------EEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS
T ss_pred             CCC-----------------eEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC
Confidence            764                 1111111111111122222  256777777765      4688999887764332111  


Q ss_pred             CccceEEEEEcCCCCeEEEEeC---------CCcEEEccCCCCCC
Q 021484          189 DRHVVNQLEPHPHIPMFATCGI---------EKTVKLWAPMPTDF  224 (312)
Q Consensus       189 ~~~~v~~~~~~p~~~~l~t~~~---------d~~i~iwd~~~~~~  224 (312)
                      .......+.+  ++++++.|+.         -..+.+||+.+...
T Consensus       139 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W  181 (306)
T 3ii7_A          139 QRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW  181 (306)
T ss_dssp             CCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred             CcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence            1111122222  5666666653         34588899887753

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.14  E-value=0.16  Score=40.93  Aligned_cols=64  Identities=8%  Similarity=0.030  Sum_probs=36.7

Q ss_pred             CCCEEEEeccC--------ceEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeC-C-----CcEEEccCCCC
Q 021484          159 NDEYVMSGSDC--------GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGI-E-----KTVKLWAPMPT  222 (312)
Q Consensus       159 ~~~~l~~~~~d--------g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~t~~~-d-----~~i~iwd~~~~  222 (312)
                      ++..++.|+.+        ..+.+||..+.+-...  +.........+.  -++++++.|+. +     ..+.+||+.+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            56677777742        4588999887754321  111111111222  35667777775 2     46888998877


Q ss_pred             CC
Q 021484          223 DF  224 (312)
Q Consensus       223 ~~  224 (312)
                      +.
T Consensus       176 ~W  177 (315)
T 4asc_A          176 EW  177 (315)
T ss_dssp             EE
T ss_pred             eE
Confidence            53

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.07  E-value=0.3  Score=39.05  Aligned_cols=103  Identities=13%  Similarity=0.057  Sum_probs=51.1

Q ss_pred             CCCEEEEeccCc-----eEEEEeccCCeeEEEe--ecCccceEEEEEcCCCCeEEEEeCC-------CcEEEccCCCCCC
Q 021484          159 NDEYVMSGSDCG-----HLFIWKKKGGKLVRLM--VGDRHVVNQLEPHPHIPMFATCGIE-------KTVKLWAPMPTDF  224 (312)
Q Consensus       159 ~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~t~~~d-------~~i~iwd~~~~~~  224 (312)
                      ++++++.|+.++     .+.+||+.+.+....-  .........+.+  ++++++.|+.+       ..+.+||+.+...
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            567777776543     5788898877643321  111111122222  56666666542       3588899887653


Q ss_pred             CCCCCChhhhhhhhccCCCCceeEEecCC-----ceEEEEEecc
Q 021484          225 PPLPDNAEKIMKANKQGREDHSRITLTPD-----VIMHVLRLQR  263 (312)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~i~~~~~  263 (312)
                      ..+...............++.+++.++.+     ..+.++|+.+
T Consensus       186 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~  229 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTT  229 (302)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred             EECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCC
Confidence            22211111110111111245566666554     3566777544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.98  E-value=0.52  Score=38.71  Aligned_cols=157  Identities=12%  Similarity=0.085  Sum_probs=83.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC----CCeEEE-e
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELLIS-Y  106 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~s-~  106 (312)
                      ....|+|.|++ .++++--..|.|++++...++..       .+..  ...+..........|+++|+    +.+.++ +
T Consensus        33 ~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~-------~v~~--~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           33 SPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKT-------ELGE--VPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             SEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE-------EEEE--CTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             CceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEe-------eecc--cCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            46799999998 67766655899999886554321       0100  11111233566889999995    444444 2


Q ss_pred             --cCCcEEEEEcCCCcCCCCCcCCcccccCCCC-CceEe-cccCCceeeEEEEecCCCCEEEEecc-------------C
Q 021484          107 --NDELVYLFEKNMGLGPSPLSLSPEDLQKREE-PQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSD-------------C  169 (312)
Q Consensus       107 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~~-------------d  169 (312)
                        .++.|.-|.+...... ...     +...+. +..+. ...+.  ...+.| .|+|.+.++.+.             .
T Consensus       103 ~~~~~~v~R~~~~~~~~~-~~~-----~~~~~~i~~~~p~~~~H~--g~~l~f-gpDG~Lyvt~Gd~~~~~~~qd~~~~~  173 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPS-GEQ-----LGAPDTVFRGIPKGVIHN--GGRIAF-GPDKMLYAGTGESGDTGLSQDRKSLG  173 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCT-TCC-----BCCCEEEEEEECCCSSCC--CCCEEE-CTTSCEEEECBCTTCGGGTTCTTCST
T ss_pred             cCCCCEEEEEEeCCCCcc-ccc-----CCCcEEEEEcCCCCCCcc--CccccC-CCCCCEEEEECCCCCCccccCCCCCC
Confidence              3556666666542100 000     000011 11111 11111  567898 899987776542             3


Q ss_pred             ceEEEEeccCCe-------eEEEe-ecCccceEEEEEcCCCCeEEEE
Q 021484          170 GHLFIWKKKGGK-------LVRLM-VGDRHVVNQLEPHPHIPMFATC  208 (312)
Q Consensus       170 g~v~iwd~~~~~-------~~~~~-~~~~~~v~~~~~~p~~~~l~t~  208 (312)
                      |.|.-.+....-       ....+ .+|. ....++|+|++.++++-
T Consensus       174 G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d  219 (347)
T 3das_A          174 GKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             TCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEE
T ss_pred             CEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEe
Confidence            555555554210       01122 2454 34689999988776554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.88  E-value=0.58  Score=40.09  Aligned_cols=64  Identities=13%  Similarity=0.155  Sum_probs=36.8

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccccc--CCCccEEEEEEccC----CCeEEE
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG--KNNIHITGLAYSNT----SELLIS  105 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~----~~~l~s  105 (312)
                      ....|+|.|++ +++++-...+.|++++..+++..       .+..+  .....  ........|+|+|+    +.+.++
T Consensus        28 ~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~-------~~~~~--~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           28 KPHALLWGPDN-QIWLTERATGKILRVNPESGSVK-------TVFQV--PEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             SEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE-------EEEEC--TTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEe-------EEecC--CccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            45799999998 66666544457888876544321       01111  11101  12466889999994    444444

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.77  E-value=0.35  Score=38.92  Aligned_cols=64  Identities=9%  Similarity=0.171  Sum_probs=37.6

Q ss_pred             CCCEEEEecc------CceEEEEeccCCeeEEEe--ecCccceEEEEEcCCCCeEEEEeCCC-----cEEEccCCCCCC
Q 021484          159 NDEYVMSGSD------CGHLFIWKKKGGKLVRLM--VGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWAPMPTDF  224 (312)
Q Consensus       159 ~~~~l~~~~~------dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~t~~~d~-----~i~iwd~~~~~~  224 (312)
                      ++++++.|+.      -..+.+||+.+.+-...-  .........+.+  ++++++.|+.++     .+.+||+.+.+.
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  224 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKW  224 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence            5667777775      246889998876543221  111111122222  667777777554     588899888754

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.72  E-value=0.7  Score=38.03  Aligned_cols=151  Identities=12%  Similarity=0.122  Sum_probs=79.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC----CCeEEEec
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELLISYN  107 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~s~~  107 (312)
                      ....++|.|++ +++++ ..+|.|++++  .++..       .+....   ...........|+++|+    +.++++..
T Consensus        32 ~P~~ia~~pdG-~l~V~-e~~g~I~~i~--~g~~~-------~~~~~~---v~~~g~~~p~gia~~pdf~~~g~lYv~~~   97 (352)
T 2ism_A           32 VPWALAFLPDG-GMLIA-ERPGRIRLFR--EGRLS-------TYAELS---VYHRGESGLLGLALHPRFPQEPYVYAYRT   97 (352)
T ss_dssp             CEEEEEECTTS-CEEEE-ETTTEEEEEE--TTEEE-------EEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CceEEEEcCCC-eEEEE-eCCCeEEEEE--CCCcc-------Eeecce---EeecCCCCceeEEECCCCCCCCEEEEEEe
Confidence            45789999998 55544 5669999998  34311       011100   11222456789999998    44444433


Q ss_pred             -C-----CcEEEEEcCCCcCCCCCcCCcccccCCC-CCceEec-ccCCceeeEEEEecCCCCEEEEecc-----------
Q 021484          108 -D-----ELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSD-----------  168 (312)
Q Consensus       108 -d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~v~~v~~~s~~~~~l~~~~~-----------  168 (312)
                       .     +.|..|+.....           +...+ ....+.. .........++| .|+|.+.++.+.           
T Consensus        98 ~~~~~~~~~v~r~~~~~~~-----------~~~~~~l~~~~p~~~~~~h~~~~l~~-~pdG~Lyv~~G~~~~~~~~~d~~  165 (352)
T 2ism_A           98 VAEGGLRNQVVRLRHLGER-----------GVLDRVVLDGIPARPHGLHSGGRIAF-GPDGMLYVTTGEVYERELAQDLA  165 (352)
T ss_dssp             ECTTSSEEEEEEEEECSSC-----------EEEEEEEEEEECCCTTCCCCCCCEEE-CTTSCEEEECCCTTCGGGGGCTT
T ss_pred             cCCCCCccEEEEEEeCCCC-----------cCceEEEEEeCCCCCCCCcCCceEEE-CCCCCEEEEECCCCCCccccCCC
Confidence             3     678888775320           00001 1111220 000011467898 899976666432           


Q ss_pred             --CceEEEEeccCC------------eeEEEe-ecCccceEEEEEcC-CCCeEEEEe
Q 021484          169 --CGHLFIWKKKGG------------KLVRLM-VGDRHVVNQLEPHP-HIPMFATCG  209 (312)
Q Consensus       169 --dg~v~iwd~~~~------------~~~~~~-~~~~~~v~~~~~~p-~~~~l~t~~  209 (312)
                        .|.|.-++....            .....+ .++. ....++|+| ++.++++-.
T Consensus       166 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          166 SLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             CSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEE
T ss_pred             CCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEc
Confidence              256666665420            011111 2333 356799999 666655544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.68  E-value=0.28  Score=39.57  Aligned_cols=64  Identities=11%  Similarity=0.136  Sum_probs=36.2

Q ss_pred             CCCEEEEeccC-------ceEEEEeccCCeeEEEe--ecCccceEEEEEcCCCCeEEEEeC------CCcEEEccCCCCC
Q 021484          159 NDEYVMSGSDC-------GHLFIWKKKGGKLVRLM--VGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTD  223 (312)
Q Consensus       159 ~~~~l~~~~~d-------g~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~t~~~------d~~i~iwd~~~~~  223 (312)
                      +++.++.|+.+       ..+.+||..+.+....-  ......-..+.  .++++++.|+.      -..+.+||+.+.+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            56677777654       35888898876644321  11111111222  36667677663      2358899988775


Q ss_pred             C
Q 021484          224 F  224 (312)
Q Consensus       224 ~  224 (312)
                      .
T Consensus       187 W  187 (318)
T 2woz_A          187 W  187 (318)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.67  E-value=0.37  Score=39.70  Aligned_cols=104  Identities=19%  Similarity=0.231  Sum_probs=61.4

Q ss_pred             ccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCC---CCEEE
Q 021484           89 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPN---DEYVM  164 (312)
Q Consensus        89 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~---~~~l~  164 (312)
                      .....++|.|+|+++++-..+.|++++  .+..              ..+..+. ..........+++ +|+   +..|+
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~--------------~~~~~~~v~~~g~~~p~gia~-~pdf~~~g~lY   93 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRL--------------STYAELSVYHRGESGLLGLAL-HPRFPQEPYVY   93 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE--TTEE--------------EEEEECCCCCSTTCSEEEEEE-CTTTTTSCEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCc--------------cEeecceEeecCCCCceeEEE-CCCCCCCCEEE
Confidence            346799999999988887679999998  3200              1111111 0011122789999 887   55555


Q ss_pred             Eecc-C-----ceEEEEeccCCe-----eE-EEee---cCccceEEEEEcCCCCeEEEEe
Q 021484          165 SGSD-C-----GHLFIWKKKGGK-----LV-RLMV---GDRHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       165 ~~~~-d-----g~v~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~~p~~~~l~t~~  209 (312)
                      .+.. .     +.|..++...++     .+ ..+.   ........++|.|+|.+.++.+
T Consensus        94 v~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           94 AYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            4443 2     678888876431     11 2233   1112346899999998766643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.63  E-value=0.76  Score=37.85  Aligned_cols=152  Identities=16%  Similarity=0.089  Sum_probs=79.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC----CCeEEEec
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELLISYN  107 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~s~~  107 (312)
                      ....|+|.|++ +++ ++..+|.|++++. +++ .       .+..+.   ...........|+++|+    +.++++..
T Consensus        30 ~P~~ia~~pdG-~l~-V~e~~g~I~~~d~-~G~-~-------~~~~~~---v~~~g~~g~~gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           30 VPWSIAPLGGG-RYL-VTERPGRLVLISP-SGK-K-------LVASFD---VANVGEAGLLGLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             CEEEEEEEETT-EEE-EEETTTEEEEECS-SCE-E-------EEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCeEEEEcCCC-eEE-EEeCCCEEEEEeC-CCc-e-------Eeeccc---eeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence            46789999998 544 4556699998873 332 0       011100   11122356789999997    45555533


Q ss_pred             ----C----CcEEEEEcCCCcCCCCCcCCcccccCCCC-CceEecccCCceeeEEEEecCCCCEEEEecc----------
Q 021484          108 ----D----ELVYLFEKNMGLGPSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----------  168 (312)
Q Consensus       108 ----d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~----------  168 (312)
                          +    ..|..|+.......         +...+. ...+..... .....++| .|+|.+.++.+.          
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~---------~~~~~~l~~~~~~~~~-h~~~~l~~-~pDG~Lyvt~G~~~~~~~~~d~  164 (354)
T 3a9g_A           96 YFAEGGHIRNRVIRGRLDGSTFK---------LKEVKTLIDGIPGAYI-HNGGRIRF-GPDGMLYITTGDAADPRLAQDL  164 (354)
T ss_dssp             EECGGGCEEEEEEEEEECSSSCC---------EEEEEEEEEEEECCSS-CCCCCEEE-CTTSCEEEECCCTTCGGGGTCT
T ss_pred             ccCCCCCcceEEEEEEECCCCcC---------cCccEEEEEcCCCCCC-cCCceEEE-CCCCcEEEEECCCCCCccccCC
Confidence                3    56777776542000         000011 111221110 11467888 899987666432          


Q ss_pred             ---CceEEEEeccCC--------eeEEEeecCccceEEEEEcC-CCCeEEEEe
Q 021484          169 ---CGHLFIWKKKGG--------KLVRLMVGDRHVVNQLEPHP-HIPMFATCG  209 (312)
Q Consensus       169 ---dg~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~~p-~~~~l~t~~  209 (312)
                         .|.|.-++....        .....-.++. ....++|+| ++.++++-.
T Consensus       165 ~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~  216 (354)
T 3a9g_A          165 SSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEH  216 (354)
T ss_dssp             TCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEEC
T ss_pred             CCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEec
Confidence               256666665421        0111112343 346899999 666655543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.14  Score=41.86  Aligned_cols=146  Identities=15%  Similarity=0.122  Sum_probs=77.0

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCC--CCcccccccccccCCCccEEEEEEccCCCeEEE--ecCCcEEEEEcCCC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSD--TPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--YNDELVYLFEKNMG  119 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s--~~d~~i~iwd~~~~  119 (312)
                      .+++.++.||.|.-.|..+|+.....+..  .+....      .....       ..++..++.  ..||.|+.++..++
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~------~~~~~-------~~~~~~~vv~p~~dG~l~a~~~~~G   77 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEI------QEPSR-------LETYETLIIEPFGDGNIYYFNAHQG   77 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEEC------CCSCT-------TTSSEEEEECCSTTTEEEEEETTTE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEe------cCCcc-------ccCCcEEEEEECCCCEEEEEECCCC
Confidence            47888999999999999998865443221  000000      00000       012334444  35888888887665


Q ss_pred             cCCCCCcCCcccccCCCCCceEeccc--CCceeeE----EEE---ecCCCCEEEEeccCceEEEEeccCCeeEEEeecCc
Q 021484          120 LGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKG----VNF---FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  190 (312)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~----v~~---~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  190 (312)
                                      .....+....  ...++..    +..   ....+..+++|+.+|.+...|+.+|+.+..+....
T Consensus        78 ----------------~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~  141 (339)
T 2be1_A           78 ----------------LQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGS  141 (339)
T ss_dssp             ----------------EEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTC
T ss_pred             ----------------cEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCC
Confidence                            2212221110  0000110    000   00146788999999999999999999998886321


Q ss_pred             --cce-----EEEEEc-----CCCCeEEEEeCCCcEEEcc
Q 021484          191 --HVV-----NQLEPH-----PHIPMFATCGIEKTVKLWA  218 (312)
Q Consensus       191 --~~v-----~~~~~~-----p~~~~l~t~~~d~~i~iwd  218 (312)
                        +.+     .+....     ..+..++.+..+..+.+.+
T Consensus       142 ~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          142 KNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS  181 (339)
T ss_dssp             BCC--------------------CCEEEEEEEEEECEECC
T ss_pred             CcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence              100     011110     1234566666677777766

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.99  E-value=1.3  Score=36.56  Aligned_cols=156  Identities=12%  Similarity=0.202  Sum_probs=87.4

Q ss_pred             ceEEEEEcC--CCC-cEEEEEeC--CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           32 RLNAIVIDP--RNP-NYFAVGGS--DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        32 ~v~~~~~~p--~~~-~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      ....+.+.+  ++. +++++-..  +.+|.+|++....-         ... ....+....-.....+++.++|.+.++.
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~---------~~~-~~~~~~g~~~~~pND~~v~~~G~fyvt~  182 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK---------SLL-HLKTIRHKLLPSVNDIVAVGPEHFYATN  182 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT---------EEE-EEEEECCTTCSSEEEEEEEETTEEEEEE
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC---------EEE-EEeccccCCCCCCceEEEeCCCCEEecC
Confidence            455666655  332 34454333  57788888764320         000 1111111223457889999999977774


Q ss_pred             c----C--------------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe-c
Q 021484          107 N----D--------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-S  167 (312)
Q Consensus       107 ~----d--------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~-~  167 (312)
                      .    |              +.|+.++.  +                +. +.+...-..  .+.++| +|+++.|+.+ +
T Consensus       183 ~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~----------------~~-~~~~~~l~~--pNGia~-spDg~~lYvadt  240 (355)
T 3sre_A          183 DHYFIDPYLKSWEMHLGLAWSFVTYYSP--N----------------DV-RVVAEGFDF--ANGINI-SPDGKYVYIAEL  240 (355)
T ss_dssp             SCSCSSHHHHHHHHHTTCCCEEEEEECT--T----------------CC-EEEEEEESS--EEEEEE-CTTSSEEEEEEG
T ss_pred             CcEeCCcccccchhhccCCccEEEEEEC--C----------------eE-EEeecCCcc--cCcceE-CCCCCEEEEEeC
Confidence            2    1              23444433  2                22 222222222  688999 9999877655 4


Q ss_pred             cCceEEEEeccC-Cee--EEEeecCccceEEEEEcC-CCCeEEEEeCC-CcEEEccCC
Q 021484          168 DCGHLFIWKKKG-GKL--VRLMVGDRHVVNQLEPHP-HIPMFATCGIE-KTVKLWAPM  220 (312)
Q Consensus       168 ~dg~v~iwd~~~-~~~--~~~~~~~~~~v~~~~~~p-~~~~l~t~~~d-~~i~iwd~~  220 (312)
                      ..+.|+.|++.. ++.  ...+. ..+..-.++..+ +|++.+++..+ +.|..|+..
T Consensus       241 ~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          241 LAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             CCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            678999999863 332  22332 245667889998 58887777644 344444443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.99  E-value=1.4  Score=37.23  Aligned_cols=195  Identities=10%  Similarity=0.158  Sum_probs=115.9

Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEE
Q 021484           35 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF  114 (312)
Q Consensus        35 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iw  114 (312)
                      +.-.+|.. +.+|.-. ..++.|+|+++++-+              +.. . ..+.|.--.|-.+ +.|+--.+..|+-|
T Consensus        70 sAIMnP~~-~iiALra-g~~lQiFnle~K~kl--------------ks~-~-~~e~VvfWkWis~-~~l~lVT~taVyHW  130 (494)
T 1bpo_A           70 SAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM--------------KAH-T-MTDDVTFWKWISL-NTVALVTDNAVYHW  130 (494)
T ss_dssp             EEEECSSS-SCEEEEE-TTEEEEEETTTTEEE--------------EEE-E-CSSCCCEEEEEET-TEEEEECSSEEEEE
T ss_pred             eeeeCCCC-cEEEEec-CCeEEEEchHHhhhh--------------cce-e-cCCCceEEEecCC-CeEEEEcCCeeEEe
Confidence            56678877 5666655 689999999988622              111 1 1345666667543 45555678899999


Q ss_pred             EcCCCcCCCCCcCCcccccCCCCCceEecccC--CceeeEEEEecCCCCEEEEec-------cCceEEEEeccCCeeEEE
Q 021484          115 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN--SQTVKGVNFFGPNDEYVMSGS-------DCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~~~s~~~~~l~~~~-------~dg~v~iwd~~~~~~~~~  185 (312)
                      ++....               .+.+.|.-|..  ...|..-.. +++.++++..+       -.|.+.+|+.+. +.-+.
T Consensus       131 si~~~s---------------~P~kvFdR~~~L~~~QIInY~~-d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~  193 (494)
T 1bpo_A          131 SMEGES---------------QPVKMFDRHSSLAGCQIINYRT-DAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQP  193 (494)
T ss_dssp             ESSSSC---------------CCEEEEECCGGGTTCEEEEEEE-CTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEE
T ss_pred             cccCCC---------------CchhheecchhcccceEEEEEE-CCCCCeEEEEeecccCCcccceEEEeeccc-cccch
Confidence            997532               45566665432  122556555 88889877543       257788998874 44567


Q ss_pred             eecCccceEEEEEcCCC---CeEEEEeCC---CcEEEccCCCCC--CCCCCC----------ChhhhhhhhccCCCCcee
Q 021484          186 MVGDRHVVNQLEPHPHI---PMFATCGIE---KTVKLWAPMPTD--FPPLPD----------NAEKIMKANKQGREDHSR  247 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~---~~l~t~~~d---~~i~iwd~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~l  247 (312)
                      +.+|.+....+...-+.   ..++.+...   +.++|-++....  ...+..          ......-....+.....+
T Consensus       194 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygvi  273 (494)
T 1bpo_A          194 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV  273 (494)
T ss_dssp             ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEE
T ss_pred             heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEE
Confidence            78887655444442211   234444432   788888875431  111111          011111111122334567


Q ss_pred             EEecCCceEEEEEecccC
Q 021484          248 ITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       248 ~s~~~d~~i~i~~~~~~~  265 (312)
                      .-.+.-|.++++|+.+..
T Consensus       274 yviTK~G~i~lyDleTgt  291 (494)
T 1bpo_A          274 FLITKYGYIHLYDLETGT  291 (494)
T ss_dssp             EEEETTSEEEEEETTTCC
T ss_pred             EEEecCceEEEEecccce
Confidence            778889999999998873

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.96  E-value=1.3  Score=36.49  Aligned_cols=101  Identities=14%  Similarity=0.161  Sum_probs=60.9

Q ss_pred             ccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec----ccCCceeeEEEEecCC---CC
Q 021484           89 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG----HRNSQTVKGVNFFGPN---DE  161 (312)
Q Consensus        89 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~v~~~s~~---~~  161 (312)
                      .....++|.|+|+++++-.++.|++++. .+                +  ..+..    .........+++ +|+   +.
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G----------------~--~~~~~~~v~~~g~~g~~gia~-~pdf~~~g   88 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SG----------------K--KLVASFDVANVGEAGLLGLAL-HPEFPKKS   88 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SC----------------E--EEEEECCCCCSTTCSEEEEEE-CTTTTTSC
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CC----------------c--eEeeccceeecCCCceeeEEe-CCCCCcCC
Confidence            4567999999999888877799999863 33                1  11110    011122788999 887   45


Q ss_pred             EEEEecc----C----ceEEEEeccCC-------eeE-EEeec-CccceEEEEEcCCCCeEEEEe
Q 021484          162 YVMSGSD----C----GHLFIWKKKGG-------KLV-RLMVG-DRHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       162 ~l~~~~~----d----g~v~iwd~~~~-------~~~-~~~~~-~~~~v~~~~~~p~~~~l~t~~  209 (312)
                      .|+++..    +    ..|..|+....       +.+ ..+.. .......++|.|+|.++++.+
T Consensus        89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A           89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            5544433    3    67888876643       111 12221 112346799999998766654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.93  E-value=1.3  Score=43.40  Aligned_cols=206  Identities=11%  Similarity=0.052  Sum_probs=107.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE-Ee-c--
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-SY-N--  107 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~--  107 (312)
                      +|.-=.|-..  +.|+..+ +..|+-|++....        .|+.-|.....+.  ...|..-.-+++.+.++ .| +  
T Consensus       107 ~VvfWkWis~--~~l~lVT-~~aVyHW~~~~~s--------~P~k~fdR~~~L~--~~QIinY~~d~~~kW~~l~gi~~~  173 (1630)
T 1xi4_A          107 DVTFWKWISL--NTVALVT-DNAVYHWSMEGES--------QPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQ  173 (1630)
T ss_pred             CceEEEecCC--CeeEEEc-CCeEEEeccCCCC--------ccHHHHhcchhcc--cCeeEEeeeCCCCCeEEEEeeccC
Confidence            4444455443  3444443 3568888886422        2333332222212  35566777788887443 23 1  


Q ss_pred             ----CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe-cCC-CCEEEEec---cCceEEEEecc
Q 021484          108 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF-GPN-DEYVMSGS---DCGHLFIWKKK  178 (312)
Q Consensus       108 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-s~~-~~~l~~~~---~dg~v~iwd~~  178 (312)
                          .|.+.+|..+.+                 ..+.+.||...  ...+... .+. .+.+..+.   ..+.++|-++.
T Consensus       174 ~~~v~G~mQLyS~er~-----------------~sQ~iegha~~--F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~  234 (1630)
T 1xi4_A          174 QNRVVGAMQLYSVDRK-----------------VSQPIEGHAAS--FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG  234 (1630)
T ss_pred             CCcccceeeeeecccc-----------------cchhhhHhHhh--hheeccCCCCCCceEEEEEEecCCCceEEEEecC
Confidence                467888888764                 55666676543  2222220 111 12222221   13688888874


Q ss_pred             CC---ee------EEEeec---CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCc
Q 021484          179 GG---KL------VRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDH  245 (312)
Q Consensus       179 ~~---~~------~~~~~~---~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~  245 (312)
                      ..   .+      +..+..   -..-...+..++....+...+.-|.|.++|+.++.. ..-+-....++... ......
T Consensus       235 ~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~-~~~~~~  313 (1630)
T 1xi4_A          235 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA-PHEATA  313 (1630)
T ss_pred             CCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEec-cCCCCC
Confidence            32   11      111110   112234577777777777778889999999999874 22222333332222 223344


Q ss_pred             eeEEecCCceEEEEEecccCcccee
Q 021484          246 SRITLTPDVIMHVLRLQRRQTLAYR  270 (312)
Q Consensus       246 ~l~s~~~d~~i~i~~~~~~~~~~~~  270 (312)
                      -++.....|.+.-..+...+...|+
T Consensus       314 g~~~vnr~G~vl~v~v~~~~iv~yi  338 (1630)
T 1xi4_A          314 GIIGVNRKGQVLSVCVEEENIIPYI  338 (1630)
T ss_pred             ceEEEcCCceEEEEEEccchhhhhH
Confidence            5566667777766666666555444

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.53  E-value=1.7  Score=35.78  Aligned_cols=153  Identities=11%  Similarity=0.113  Sum_probs=77.9

Q ss_pred             ceEEEEEcCCCCc-EEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC----CCeEEEe
Q 021484           32 RLNAIVIDPRNPN-YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELLISY  106 (312)
Q Consensus        32 ~v~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~s~  106 (312)
                      ....|+|.|++ + ++ ++...|.|++++.. ++...      .+...  ..+..........|+++|+    +.+.++.
T Consensus        19 ~P~~i~~~pdG-~~l~-V~e~~G~i~~~~~~-g~~~~------~~~~~--~~v~~~g~~g~~gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A           19 HPWALAFLPDN-HGML-ITLRGGELRHWQAG-KGLSA------PLSGV--PDVWAHGQGGLLDVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             SEEEEEECSTT-CCEE-EEETTTEEEEEETT-TEECC------CCBSC--CCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred             CcEEEEEcCCC-CEEE-EEeCCceEEEEeCC-Cceee------EecCC--cccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence            36799999998 6 55 44567999999853 33211      11110  0111222345789999995    5544443


Q ss_pred             -c-------CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc----CCceeeEEEEecCCCCEEEEecc------
Q 021484          107 -N-------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR----NSQTVKGVNFFGPNDEYVMSGSD------  168 (312)
Q Consensus       107 -~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~v~~~s~~~~~l~~~~~------  168 (312)
                       .       ...|..|++.....    .     +.  .....+....    .......++| .|+|.+.++.+.      
T Consensus        88 ~~~~~~g~~~~~v~r~~~~~~~~----~-----~~--~~~~i~~~~p~~~~~~h~~~~l~~-~pdG~Lyv~~Gd~~~~~~  155 (353)
T 2g8s_A           88 SEVGDDGKAGTAVGYGRLSDDLS----K-----VT--DFRTVFRQMPKLSTGNHFGGRLVF-DGKGYLFIALGENNQRPT  155 (353)
T ss_dssp             EEECSSSCEEEEEEEEEECTTSS----B-----EE--EEEEEEECSSCCBSSSCCCCCEEE-CSSSEEEEEECCTTCGGG
T ss_pred             eCCCCCCCceeEEEEEEECCCCC----C-----CC--ceEEEEEECCCCCCCcccCccEEE-CCCCcEEEEECCCCCCCc
Confidence             2       12466666543200    0     00  0001111110    0011457898 899976665433      


Q ss_pred             -------CceEEEEeccCCe------------eEEEe-ecCccceEEEEEcC-CCCeEEEE
Q 021484          169 -------CGHLFIWKKKGGK------------LVRLM-VGDRHVVNQLEPHP-HIPMFATC  208 (312)
Q Consensus       169 -------dg~v~iwd~~~~~------------~~~~~-~~~~~~v~~~~~~p-~~~~l~t~  208 (312)
                             .|.|.-++....-            ....+ .++. ....++|+| ++.++++-
T Consensus       156 ~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d  215 (353)
T 2g8s_A          156 AQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNE  215 (353)
T ss_dssp             GGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEE
T ss_pred             cCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEe
Confidence                   2467777765320            11122 2343 467899999 56655543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.33  E-value=1.6  Score=34.96  Aligned_cols=65  Identities=15%  Similarity=0.219  Sum_probs=37.4

Q ss_pred             CCCEEEEecc------CceEEEEeccCCeeEEEe--ecCccceEEEEEcCCCCeEEEEeCC-----CcEEEccCCCCCCC
Q 021484          159 NDEYVMSGSD------CGHLFIWKKKGGKLVRLM--VGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDFP  225 (312)
Q Consensus       159 ~~~~l~~~~~------dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~~  225 (312)
                      ++++++.|+.      -..+.+||+.+.+....-  .........+.+  ++++++.|+.+     ..+.+||+.+.+..
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence            5677777764      235899999877643321  111111122222  56777777643     35778998887643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.11  E-value=0.67  Score=45.28  Aligned_cols=150  Identities=10%  Similarity=0.170  Sum_probs=94.9

Q ss_pred             EEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceE
Q 021484           93 GLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL  172 (312)
Q Consensus        93 ~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v  172 (312)
                      +.-.+|..+++|--...++.|||+.+.                ..++.+.-.   ..|.--.|.++  +.|+..+ +..|
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnl~~k----------------~klks~~~~---e~VvfWkWis~--~~l~lVT-~~aV  127 (1630)
T 1xi4_A           70 SAIMNPASKVIALKAGKTLQIFNIEMK----------------SKMKAHTMT---DDVTFWKWISL--NTVALVT-DNAV  127 (1630)
T ss_pred             hhccCCCcceEEEecCCeEEEeehHHh----------------hhhcccccC---CCceEEEecCC--CeeEEEc-CCeE
Confidence            445688888777767889999999876                444444322   33777777443  3343333 4579


Q ss_pred             EEEeccC-CeeEEEeecC----ccceEEEEEcCCCCeEEEEe-------CCCcEEEccCCCCCCCCCCCChhhhhhhhcc
Q 021484          173 FIWKKKG-GKLVRLMVGD----RHVVNQLEPHPHIPMFATCG-------IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQ  240 (312)
Q Consensus       173 ~iwd~~~-~~~~~~~~~~----~~~v~~~~~~p~~~~l~t~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  240 (312)
                      +-|++.. ..+++.+..|    ...|..-..+++.++++..|       ..|.+.+|+.+.+....+.+|.........-
T Consensus       128 yHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~  207 (1630)
T 1xi4_A          128 YHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKME  207 (1630)
T ss_pred             EEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccC
Confidence            9999863 4555555555    34676777788999865443       3588999999888777777776655322211


Q ss_pred             C-CCCceeEEecC----CceEEEEEeccc
Q 021484          241 G-REDHSRITLTP----DVIMHVLRLQRR  264 (312)
Q Consensus       241 ~-~~~~~l~s~~~----d~~i~i~~~~~~  264 (312)
                      . +....++++..    .+.++|.++...
T Consensus       208 ~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~  236 (1630)
T 1xi4_A          208 GNAEESTLFCFAVRGQAGGKLHIIEVGTP  236 (1630)
T ss_pred             CCCCCceEEEEEEecCCCceEEEEecCCC
Confidence            1 12233444333    378999988543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=93.97  E-value=2.2  Score=34.99  Aligned_cols=143  Identities=9%  Similarity=0.127  Sum_probs=85.9

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc----CCC---eEEEe--c--CCcEE
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN----TSE---LLISY--N--DELVY  112 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~---~l~s~--~--d~~i~  112 (312)
                      .+++.....+-+.+||+ +++.+.              .+ .  .+.+..+..-|    .|+   +++++  .  +++|.
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~--------------~~-~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~  102 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLH--------------SY-N--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIE  102 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEE--------------EE-C--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEE
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEE--------------Ec-c--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEE
Confidence            45666677789999999 555321              11 1  13344444444    232   33333  3  57899


Q ss_pred             EEEcCCCcCCCCCcCCcccccCCCCCceEecc-----cCCceeeEEEEe-cC-CCC-EEEEeccCceEEEEecc------
Q 021484          113 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-----RNSQTVKGVNFF-GP-NDE-YVMSGSDCGHLFIWKKK------  178 (312)
Q Consensus       113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~v~~~-s~-~~~-~l~~~~~dg~v~iwd~~------  178 (312)
                      +|++....               ..+..+...     .....+..+|++ ++ .+. ++++...+|.+..|++.      
T Consensus       103 vf~iDp~~---------------~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~  167 (355)
T 3amr_A          103 IYAIDGKN---------------GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY  167 (355)
T ss_dssp             EEEECTTT---------------CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC
T ss_pred             EEEECCCC---------------CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc
Confidence            99874221               122222110     000225556653 44 343 68888889999999873      


Q ss_pred             -CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484          179 -GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  220 (312)
Q Consensus       179 -~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  220 (312)
                       +.+.++++... +.+-.+...+....|..+-++.-|..++.+
T Consensus       168 ~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          168 ISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             EEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             ccceEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence             34667777644 467888899999999999988766666644

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.91  E-value=1.9  Score=36.80  Aligned_cols=106  Identities=10%  Similarity=0.134  Sum_probs=60.2

Q ss_pred             ccEEEEEEccCCCeEEEecC-CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec----ccCCceeeEEEEecCC---C
Q 021484           89 IHITGLAYSNTSELLISYND-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG----HRNSQTVKGVNFFGPN---D  160 (312)
Q Consensus        89 ~~i~~~~~~~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~v~~~s~~---~  160 (312)
                      .....|+|.|+|+++++-.. +.|++++..++..              ..+..+..    .....-+..++| +|+   +
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~--------------~~~~~~~~~~~~~~g~~Gllgia~-~Pdf~~~   91 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV--------------KTVFQVPEIVNDADGQNGLLGFAF-HPDFKNN   91 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE--------------EEEEECTTCCCCTTSSCSEEEEEE-CTTTTTS
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE--------------eEEecCCccccccCCCCceeEEEE-CCCcCcC
Confidence            45679999999998888765 4788887644310              00111110    001122779999 885   5


Q ss_pred             CEEEEecc-------------CceEEEEeccCC--e-----eEE-Eeec-CccceEEEEEcCCCCeEEEEe
Q 021484          161 EYVMSGSD-------------CGHLFIWKKKGG--K-----LVR-LMVG-DRHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       161 ~~l~~~~~-------------dg~v~iwd~~~~--~-----~~~-~~~~-~~~~v~~~~~~p~~~~l~t~~  209 (312)
                      .+|+.+..             ...|.-+++...  +     .+. .+.. ..+....++|.|+|.+.++.+
T Consensus        92 g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           92 PYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             CEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            55544432             235666665422  1     111 1221 123468899999999876655

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.68  E-value=2.9  Score=35.45  Aligned_cols=192  Identities=9%  Similarity=0.102  Sum_probs=112.9

Q ss_pred             CeeecccC-ccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEe------CCCeEEEEEccCCeecCCCCCCC
Q 021484            1 MWQFDLRS-DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG------SDEYARVYDIRKCHWYSPISSDT   73 (312)
Q Consensus         1 v~~wd~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~   73 (312)
                      |..|++.. ..+.+++.-+..-       ....|..-..+++..-++++|-      -.|.+.+|..+.+.         
T Consensus       127 VyHWsi~~~s~P~kvFdR~~~L-------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~---------  190 (494)
T 1bpo_A          127 VYHWSMEGESQPVKMFDRHSSL-------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---------  190 (494)
T ss_dssp             EEEEESSSSCCCEEEEECCGGG-------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC---------
T ss_pred             eEEecccCCCCchhheecchhc-------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc---------
Confidence            46788864 2355555443221       1346778888888843444442      34778888887543         


Q ss_pred             CcccccccccccCCCccEEEEEEccCCC---eEEEec----CCcEEEEEcCCCcCCCCCcCCcccccCCCCCce-Eeccc
Q 021484           74 PVDTFCPRHLIGKNNIHITGLAYSNTSE---LLISYN----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHR  145 (312)
Q Consensus        74 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~s~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  145 (312)
                             ...+.+|...-..+....+..   +++.+.    .++++|-++....... ..++     + +.... +....
T Consensus       191 -------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~-~~f~-----k-k~vdv~fppe~  256 (494)
T 1bpo_A          191 -------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN-QPFP-----K-KAVDVFFPPEA  256 (494)
T ss_dssp             -------EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC-CCCC-----C-EEEECCCCTTS
T ss_pred             -------cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC-CCcc-----c-eeeeeeCCccc
Confidence                   233367765554444432221   333332    3789999985431000 0000     0 01110 11111


Q ss_pred             CCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          146 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       146 ~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      .....-++.. ++....++.-+.-|.|++||+.++.++..-+-....|..-+.+....-++.....|.|.--.+....
T Consensus       257 ~~DFPvamqv-s~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          257 QNDFPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             TTCCEEEEEE-ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             ccCceeEEEe-cccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            1122445666 7778888888999999999999999988777666777666666666677777788888777666554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.56  E-value=2.3  Score=34.04  Aligned_cols=136  Identities=8%  Similarity=0.007  Sum_probs=73.2

Q ss_pred             EEccCCCeEEEec---C--CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-
Q 021484           95 AYSNTSELLISYN---D--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-  168 (312)
Q Consensus        95 ~~~~~~~~l~s~~---d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-  168 (312)
                      .|+++++.|+-..   +  ..|+..++...                 ..+.+..+.    +  .++ +++++.|+-.+. 
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-----------------~~~~lt~~~----~--~~~-~~~g~~iy~t~~g  165 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGE-----------------EKKKIKNHY----L--FTC-NTSDRYFYYNNPK  165 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSC-----------------CCEEEESSC----C--CCS-EEETTEEEEECTT
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCC-----------------CeEEEeCCC----c--eEe-eEECCEEEEEeCC
Confidence            6778888665432   3  34555565542                 334444332    2  234 566777765444 


Q ss_pred             CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC--CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCce
Q 021484          169 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS  246 (312)
Q Consensus       169 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
                      ...|.+-++..+.....+.   +... ..++|++.+|+-....  ..|..-++.+.....+....  +   .++.+.+.+
T Consensus       166 ~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~--~---~~~~~~g~~  236 (302)
T 3s25_A          166 NGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEAN--I---EHYNVYGSL  236 (302)
T ss_dssp             TCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSC--E---EEEEEETTE
T ss_pred             CceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCC--c---ceEEECCCE
Confidence            6788888887766544333   2222 3356999987766543  35666677766544443211  1   234555555


Q ss_pred             eEEe--cCCceEEEEEecc
Q 021484          247 RITL--TPDVIMHVLRLQR  263 (312)
Q Consensus       247 l~s~--~~d~~i~i~~~~~  263 (312)
                      +.-.  .....|..-++..
T Consensus       237 Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          237 IFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             EEEEECSSSCEEEEEETTS
T ss_pred             EEEEECCCCcEEEEEECCC
Confidence            5433  2234455555443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.37  E-value=2.6  Score=34.53  Aligned_cols=105  Identities=19%  Similarity=0.190  Sum_probs=61.9

Q ss_pred             CccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCc----eEecccCCceeeEEEEecCC---
Q 021484           88 NIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ----VYSGHRNSQTVKGVNFFGPN---  159 (312)
Q Consensus        88 ~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~v~~~s~~---  159 (312)
                      -.....|+|.|+|.++++-. .|.|++++..++..              ..+.    .+.....  -...+++ +|+   
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~--------------~~v~~~~~v~~~g~~--GllGia~-~Pdf~~   93 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK--------------TELGEVPGVSPSGEG--GLLGIAL-SPDYAS   93 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE--------------EEEEECTTCCCBTTB--SEEEEEE-CTTHHH
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE--------------eeecccCceeecCCC--CceeeEe-cccccc
Confidence            34578999999999999986 89999997654310              0010    1111122  2789999 885   


Q ss_pred             CCEEEEe---ccCceEEEEeccCC----------eeE-EEee-cCccceEEEEEcCCCCeEEEEe
Q 021484          160 DEYVMSG---SDCGHLFIWKKKGG----------KLV-RLMV-GDRHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       160 ~~~l~~~---~~dg~v~iwd~~~~----------~~~-~~~~-~~~~~v~~~~~~p~~~~l~t~~  209 (312)
                      ..+|+..   ..++.|.-|.+..+          +.+ ..+. ...+....+.|.|+|.+.++.+
T Consensus        94 ~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A           94 DHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             HCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            3444432   34556666665431          112 1222 1112345799999998877654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=91.88  E-value=3.8  Score=33.39  Aligned_cols=52  Identities=13%  Similarity=-0.031  Sum_probs=26.2

Q ss_pred             eEEEEeccCCee--EEEeecCccceEEEEEcCCCCeEEEEeCCC------cEEEccCCCCCC
Q 021484          171 HLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEK------TVKLWAPMPTDF  224 (312)
Q Consensus       171 ~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~------~i~iwd~~~~~~  224 (312)
                      .+.+||+.+.+.  +..+......-..+.  -++++++.|+.++      .|.++++++++.
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~  345 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKV  345 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence            577899876543  333322222222222  3677888888543      355567777764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.85  E-value=7.5  Score=35.55  Aligned_cols=173  Identities=12%  Similarity=0.045  Sum_probs=94.6

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccccc-CCCccEEEEEEccCCCeEEEecCC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNTSELLISYNDE  109 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~d~  109 (312)
                      ..|.++.-.+++ ++ -.|+ ++-+..|+..+++...          +....... .....|.++.-.++|.+.+++..+
T Consensus       373 ~~v~~i~~d~~g-~l-Wigt-~~GL~~~~~~~~~~~~----------~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~  439 (758)
T 3ott_A          373 NRIRHIYEDKEQ-QL-WIAT-DGSINRYDYATRQFIH----------YNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLG  439 (758)
T ss_dssp             SCEEEEEECTTS-CE-EEEE-TTEEEEEETTTTEEEE----------EEEECCC--CBSSSEEEEEECTTSEEEEEESSS
T ss_pred             CceEEEEECCCC-CE-EEEe-CCcHhhcCcCCCcEEE----------eecCCCcCCCCCceEEEEEEcCCCCEEEEECCC
Confidence            458888888877 33 4455 4578889988765321          00000000 023468888888888877766666


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc--cCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  187 (312)
                      -|.++|..+........     +   .....+...  .....|.++.. +.++++.+.++..+-|..+|..+++......
T Consensus       440 Gl~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~l~~~~i~~i~~-d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~  510 (758)
T 3ott_A          440 GIFVVDKHKLMQSTSGQ-----Y---IAEQNYSVHNGLSGMFINQIIP-DNEGNVWVLLYNNKGIDKINPRTREVTKLFA  510 (758)
T ss_dssp             CEEEEEHHHHHHCCSSE-----E---ECSEEECGGGTCSCSCEEEEEE-CTTSCEEEEETTCSSEEEEETTTTEEEEECT
T ss_pred             ceEEEccccccccCCcc-----e---ecccccccccccccceeeeEEE-cCCCCEEEEccCCCCcEEEeCCCCceEEecC
Confidence            78888864310000000     0   000111101  01123888877 7888876633333558889988776443221


Q ss_pred             c---CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC
Q 021484          188 G---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL  227 (312)
Q Consensus       188 ~---~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~  227 (312)
                      .   ....+.++....+|.+.+.. .. -|..++..+.....+
T Consensus       511 ~~~~~~~~~~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~  551 (758)
T 3ott_A          511 DELTGEKSPNYLLCDEDGLLWVGF-HG-GVMRINPKDESQQSI  551 (758)
T ss_dssp             TTSCGGGCEEEEEECTTSCEEEEE-TT-EEEEECC--CCCCBC
T ss_pred             CCcCCCcccceEEECCCCCEEEEe-cC-ceEEEecCCCceEEe
Confidence            1   12457788888888876543 34 488888877665433

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.76  E-value=7.7  Score=35.49  Aligned_cols=154  Identities=14%  Similarity=0.146  Sum_probs=86.1

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  109 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  109 (312)
                      ...|.++.-..++  .|..|+.+| +..||..+.+...            ..   ......|.++.. .+|.+.+++.+ 
T Consensus        62 ~~~i~~i~~d~~g--~lWigT~~G-l~~yd~~~~~f~~------------~~---~~~~~~i~~i~~-~~g~lWigt~~-  121 (758)
T 3ott_A           62 NTRIYCGVIIDNT--YLYMGTDNG-ILVYNYRADRYEQ------------PE---TDFPTDVRTMAL-QGDTLWLGALN-  121 (758)
T ss_dssp             SSCEEEEEEETTT--EEEEEETTE-EEEEETTTTEECC------------CS---CCCCSCEEEEEE-ETTEEEEEETT-
T ss_pred             CceEEEEEEcCCC--cEEEEeCCC-eEEEeCCCCEEEC------------cc---cCCCceEEEEEe-cCCcEEEEcCC-
Confidence            3468888877766  555666655 7789988765321            00   111234666654 45665555444 


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEec---ccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG---HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      -|..|+..+.                 ....+..   ......|.++.. ..++.+.+ |+.. -|..++..+++.....
T Consensus       122 Gl~~~~~~~~-----------------~~~~~~~~~~~l~~~~i~~i~~-d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~  181 (758)
T 3ott_A          122 GLYTYQLQSR-----------------KLTSFDTRRNGLPNNTIYSIIR-TKDNQIYV-GTYN-GLCRYIPSNGKFEGIP  181 (758)
T ss_dssp             EEEEEETTTC-----------------CEEEECHHHHCCSCSCEEEEEE-CTTCCEEE-EETT-EEEEEETTTTEEEEEC
T ss_pred             cceeEeCCCC-----------------eEEEeccCCCCcCCCeEEEEEE-cCCCCEEE-EeCC-CHhhCccCCCceEEec
Confidence            6888887654                 2222210   011123778876 66776655 4444 5778887766543211


Q ss_pred             -ecC----ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          187 -VGD----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       187 -~~~----~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                       ...    ...|.++...+++..|-.++. +-|..++..++..
T Consensus       182 ~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~  223 (758)
T 3ott_A          182 LPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI  223 (758)
T ss_dssp             CCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE
T ss_pred             CCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE
Confidence             111    124788888777664333443 4577888776543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.10  E-value=7.5  Score=34.13  Aligned_cols=113  Identities=6%  Similarity=-0.079  Sum_probs=68.0

Q ss_pred             cEEEEEEccCCCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec
Q 021484           90 HITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  167 (312)
Q Consensus        90 ~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~  167 (312)
                      ....+..+|+|++++.+  .+.++.++++..........+     ...+....-+...+ .-....+| +++|+...+..
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~-----~~~~~~~~ae~e~G-lGPlHt~F-d~~G~aYTtlf  396 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL-----ADPRDVIVGEPELG-LGPLHTTF-DGRGNAYTTLF  396 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC-----SCGGGGEEECCBCC-SCEEEEEE-CSSSEEEEEET
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc-----cCcccceEeeccCC-CcccEEEE-CCCCceEeeee
Confidence            34567899999987775  399999999975310000000     00000001111111 22678888 89997667778


Q ss_pred             cCceEEEEeccCC----------eeEEEeecCccceEEE-----EEcCCCCeEEEEe
Q 021484          168 DCGHLFIWKKKGG----------KLVRLMVGDRHVVNQL-----EPHPHIPMFATCG  209 (312)
Q Consensus       168 ~dg~v~iwd~~~~----------~~~~~~~~~~~~v~~~-----~~~p~~~~l~t~~  209 (312)
                      -|..|..|++...          ..+..+..|-.+-.-.     .-.|+|++|++.+
T Consensus       397 idSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          397 IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             ecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            8999999998643          3455666565432221     2357899998886

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=90.97  E-value=5.7  Score=32.53  Aligned_cols=108  Identities=16%  Similarity=0.180  Sum_probs=58.7

Q ss_pred             ccEEEEEEccCCC-eEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC---CCEEE
Q 021484           89 IHITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---DEYVM  164 (312)
Q Consensus        89 ~~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~---~~~l~  164 (312)
                      .....|+|.|+|+ ++++-..+.|++++.......     ..   .  .....+......  ...+++ +|+   +.+|+
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~-----~~---~--~~~~v~~~g~~g--~~gia~-~pdf~~~g~lY   84 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSA-----PL---S--GVPDVWAHGQGG--LLDVVL-APDFAQSRRIW   84 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECC-----CC---B--SCCCCCCSTTCS--EEEEEE-CTTHHHHCEEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceee-----Ee---c--CCcccccCCCCC--ceeEEE-CCCCCCCCEEE
Confidence            3567999999999 888877899999985332000     00   0  000011111222  688998 885   44454


Q ss_pred             Eec-c-------CceEEEEeccCC--e--eEE-Eeec------CccceEEEEEcCCCCeEEEEe
Q 021484          165 SGS-D-------CGHLFIWKKKGG--K--LVR-LMVG------DRHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       165 ~~~-~-------dg~v~iwd~~~~--~--~~~-~~~~------~~~~v~~~~~~p~~~~l~t~~  209 (312)
                      .+. .       ...|..+++...  +  ... .+..      .......++|.|+|.+.++.+
T Consensus        85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence            442 2       235666666432  1  111 1111      112235799999997766654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=90.85  E-value=5  Score=32.67  Aligned_cols=21  Identities=14%  Similarity=0.053  Sum_probs=14.2

Q ss_pred             CCCcEEEEEeC-CCeEEEEEccC
Q 021484           41 RNPNYFAVGGS-DEYARVYDIRK   62 (312)
Q Consensus        41 ~~~~~l~~~~~-dg~i~iwd~~~   62 (312)
                      ++ .+++.|+. ...+.+||+.+
T Consensus        19 ~~-~iyv~GG~~~~~~~~~d~~~   40 (357)
T 2uvk_A           19 ND-TVYIGLGSAGTAWYKLDTQA   40 (357)
T ss_dssp             TT-EEEEECGGGTTCEEEEETTS
T ss_pred             CC-EEEEEeCcCCCeEEEEcccc
Confidence            44 67777764 35688889864

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=87.95  E-value=5.1  Score=35.14  Aligned_cols=84  Identities=8%  Similarity=-0.003  Sum_probs=50.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCc
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL  110 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~  110 (312)
                      ....+..+|+|..+++.|-.+.++.++|+......-.-....+ +....... . -.-...-.+|.++|....+. -|.+
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~-~~~~~ae~-e-~GlGPlHt~Fd~~G~aYTtlfidSq  400 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADP-RDVIVGEP-E-LGLGPLHTTFDGRGNAYTTLFIDSQ  400 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCG-GGGEEECC-B-CCSCEEEEEECSSSEEEEEETTTTE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCc-ccceEeec-c-CCCcccEEEECCCCceEeeeeecce
Confidence            4557889999966667777899999999985321000000000 00000111 1 13345677999999544444 4999


Q ss_pred             EEEEEcCC
Q 021484          111 VYLFEKNM  118 (312)
Q Consensus       111 i~iwd~~~  118 (312)
                      |..|++..
T Consensus       401 vvkWni~~  408 (638)
T 3sbq_A          401 VVKWNMEE  408 (638)
T ss_dssp             EEEEEHHH
T ss_pred             EEEEeccH
Confidence            99999964

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.57  E-value=18  Score=34.28  Aligned_cols=38  Identities=13%  Similarity=-0.029  Sum_probs=32.2

Q ss_pred             eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484          149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  187 (312)
                      .+.+++. .++..++++-+.|+++++|++.+++++.+..
T Consensus       237 ~~~~~~~-~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIF-LSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEE-ETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEee-cCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            3667776 6788899999999999999999999987653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.35  E-value=15  Score=31.44  Aligned_cols=29  Identities=17%  Similarity=0.181  Sum_probs=23.5

Q ss_pred             ccEEEEEEccCCC--eEEEecCCcEEEEEcC
Q 021484           89 IHITGLAYSNTSE--LLISYNDELVYLFEKN  117 (312)
Q Consensus        89 ~~i~~~~~~~~~~--~l~s~~d~~i~iwd~~  117 (312)
                      ...+.|+|.|+|.  +|++-..|.|++++..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            3567899999995  8888789999999753

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=86.20  E-value=0.74  Score=37.62  Aligned_cols=106  Identities=9%  Similarity=0.084  Sum_probs=63.1

Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecC-ccceEEEEE--cCCCCeEEEE--eCCCcEEEccCCCCCCCCCCCChhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-RHVVNQLEP--HPHIPMFATC--GIEKTVKLWAPMPTDFPPLPDNAEKI  234 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~--~p~~~~l~t~--~~d~~i~iwd~~~~~~~~~~~~~~~~  234 (312)
                      +..++.++.||.|+-+|..+|+.+-.++.. ..++....-  .+.+..++.+  +.||.|..++..++... ........
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeeccccc
Confidence            346888999999999999999988777643 122222110  0112233333  57999999998766321 11111122


Q ss_pred             hhhhccC-------------CCCceeEEecCCceEEEEEecccCc
Q 021484          235 MKANKQG-------------REDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       235 ~~~~~~~-------------~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      +......             ..+..+++++.++.+...|+.+++.
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~  133 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI  133 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence            1110000             1456778999999999888877643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=85.19  E-value=29  Score=33.69  Aligned_cols=69  Identities=9%  Similarity=-0.075  Sum_probs=45.1

Q ss_pred             eeeEEEEecCC------CCEEEEecc-CceEEEEeccCCeeEEEeecC-ccceEEEEEc--CCCCeEEEEeCCCcEEEcc
Q 021484          149 TVKGVNFFGPN------DEYVMSGSD-CGHLFIWKKKGGKLVRLMVGD-RHVVNQLEPH--PHIPMFATCGIEKTVKLWA  218 (312)
Q Consensus       149 ~v~~v~~~s~~------~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~--p~~~~l~t~~~d~~i~iwd  218 (312)
                      .|.|+++ .+.      +.+++.|.. |++|+|+++.+.+.+...... ...+.++.+.  ....+|..|-.||.+.-+.
T Consensus       555 evscl~i-~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~  633 (1158)
T 3ei3_A          555 EVACLDI-TPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFG  633 (1158)
T ss_dssp             CEEEEEC-CCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred             ceEEEEe-ecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEE
Confidence            3899998 543      468999986 999999999887766543321 1233444332  2334677787888875544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=84.40  E-value=23  Score=32.03  Aligned_cols=68  Identities=16%  Similarity=0.221  Sum_probs=37.5

Q ss_pred             CCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeEEEe-c--C-----C
Q 021484           41 RNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY-N--D-----E  109 (312)
Q Consensus        41 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~-~--d-----~  109 (312)
                      ++ .+++.|+.++  .+.+||+.+..+........      .......|    .++.+..+ +++++.| .  +     .
T Consensus       500 ~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~------~p~~r~~~----~a~v~~~~~~~iyv~GG~~~~~~~~~~  568 (695)
T 2zwa_A          500 DG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDE------FFQNSLVS----AGLEFDPVSKQGIILGGGFMDQTTVSD  568 (695)
T ss_dssp             TS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSG------GGGSCCBS----CEEEEETTTTEEEEECCBCTTSSCBCC
T ss_pred             CC-EEEEECCCCCCCCEEEEECCCCceEEccCCCC------CCCcccce----eEEEEeCCCCEEEEECCcCCCCCeeeC
Confidence            55 7888887654  79999999887543211000      00000122    23445555 5555554 3  2     3


Q ss_pred             cEEEEEcCCC
Q 021484          110 LVYLFEKNMG  119 (312)
Q Consensus       110 ~i~iwd~~~~  119 (312)
                      .+.+||+.+.
T Consensus       569 ~v~~yd~~~~  578 (695)
T 2zwa_A          569 KAIIFKYDAE  578 (695)
T ss_dssp             EEEEEEECTT
T ss_pred             cEEEEEccCC
Confidence            5889998775

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=83.29  E-value=26  Score=31.72  Aligned_cols=152  Identities=14%  Similarity=0.206  Sum_probs=77.8

Q ss_pred             CCCcEEEEEeCC------CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c--CCcE
Q 021484           41 RNPNYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N--DELV  111 (312)
Q Consensus        41 ~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~--d~~i  111 (312)
                      ++ .+++.|+.+      ..+.+||..+.++......        + .....|     +.+...++++++.| .  ++.+
T Consensus       451 ~~-~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~--------p-~~R~~h-----~~~~~~~~~iyv~GG~~~~~~v  515 (695)
T 2zwa_A          451 NN-QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL--------S-HTRFRH-----SACSLPDGNVLILGGVTEGPAM  515 (695)
T ss_dssp             TT-EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCC--------S-BCCBSC-----EEEECTTSCEEEECCBCSSCSE
T ss_pred             CC-EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCC--------C-CCcccc-----eEEEEcCCEEEEECCCCCCCCE
Confidence            55 788888754      3578899988765432110        0 000111     22232367766664 3  2379


Q ss_pred             EEEEcCCCcCCCCCcCCcccccCCCCCce---EecccCCceeeEEEEecCC-CCEEEEecc--C-----ceEEEEeccCC
Q 021484          112 YLFEKNMGLGPSPLSLSPEDLQKREEPQV---YSGHRNSQTVKGVNFFGPN-DEYVMSGSD--C-----GHLFIWKKKGG  180 (312)
Q Consensus       112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~v~~~s~~-~~~l~~~~~--d-----g~v~iwd~~~~  180 (312)
                      .+||..+..         |.     .+..   +......  ...+.+ ... +++++.|+.  +     ..+.+||+.+.
T Consensus       516 ~~yd~~t~~---------W~-----~~~~~g~~p~~r~~--~~a~v~-~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          516 LLYNVTEEI---------FK-----DVTPKDEFFQNSLV--SAGLEF-DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             EEEETTTTE---------EE-----ECCCSSGGGGSCCB--SCEEEE-ETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             EEEECCCCc---------eE-----EccCCCCCCCcccc--eeEEEE-eCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            999987641         11     1110   1111111  233444 444 667777765  2     46889998877


Q ss_pred             ee-----EEEeec----CccceEEEEEcCCCCeEEEEeCC--------CcEEEccCCCCCCC
Q 021484          181 KL-----VRLMVG----DRHVVNQLEPHPHIPMFATCGIE--------KTVKLWAPMPTDFP  225 (312)
Q Consensus       181 ~~-----~~~~~~----~~~~v~~~~~~p~~~~l~t~~~d--------~~i~iwd~~~~~~~  225 (312)
                      +.     -..+..    ..... +++...++.+++.|+.+        ..|.+||+.+.+..
T Consensus       579 ~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          579 NATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             CSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             ccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            61     122211    11111 22223336777777742        45888888877643

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=82.12  E-value=17  Score=28.64  Aligned_cols=144  Identities=10%  Similarity=0.101  Sum_probs=67.8

Q ss_pred             ccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc
Q 021484           89 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD  168 (312)
Q Consensus        89 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~  168 (312)
                      ..|..++......+++ . +|.|+.|-.....               ++-. .....  ..|..++. ... ..++. . 
T Consensus       102 ~~v~~ia~G~~hs~al-~-~G~v~~wG~n~~g---------------qlg~-~~~~~--~~i~~i~~-G~~-~~~~l-~-  157 (282)
T 3qhy_B          102 SGVDAIAAGAWASYAL-K-DGKVIAWGDDSDG---------------QTTV-PAEAQ--SGVTALDG-GVY-TALAV-K-  157 (282)
T ss_dssp             SSEEEEEEETTEEEEE-E-TTEEEEEECCTTS---------------TTSC-CGGGG--SSEEEEEE-CSS-EEEEE-E-
T ss_pred             CCeEEEECcCCEEEEE-e-CCeEEEecCCCCC---------------cCCC-CccCC--CCeEEEEc-ccC-EEEEE-E-
Confidence            3566766554333333 4 8899999765431               1110 00111  22677765 322 22332 3 


Q ss_pred             CceEEEEeccC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCcee
Q 021484          169 CGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSR  247 (312)
Q Consensus       169 dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  247 (312)
                      +|.|+.|-... ++.-.. ..-...|..++.-... .++.  .||.|..|-....-...++..  ...............
T Consensus       158 ~G~v~~wG~n~~gqlg~p-~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~--~~~~v~~i~~G~~h~  231 (282)
T 3qhy_B          158 NGGVIAWGDNYFGQTTVP-AEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTE--ALSGVSAIASGEWYS  231 (282)
T ss_dssp             TTEEEEEECCTTSTTSCC-GGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGG--GGSSCCEEEECSSCE
T ss_pred             CCEEEEecCCCCCCCCCc-eecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcc--cCCCceEEEcCCCEE
Confidence            79999997543 221100 0112456666653332 2333  599999997554322222111  110111112223344


Q ss_pred             EEecCCceEEEEEecc
Q 021484          248 ITLTPDVIMHVLRLQR  263 (312)
Q Consensus       248 ~s~~~d~~i~i~~~~~  263 (312)
                      +... |+.+..|-...
T Consensus       232 ~al~-~g~v~~wG~n~  246 (282)
T 3qhy_B          232 LALK-NGKVIAWGSSR  246 (282)
T ss_dssp             EEEE-TTEEEEESTTC
T ss_pred             EEEE-CCEEEEecCCC
Confidence            4445 89999886443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=80.11  E-value=27  Score=29.81  Aligned_cols=29  Identities=3%  Similarity=0.051  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEYARVYDIR   61 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~   61 (312)
                      ...|+|.|++...++++...|.|++++..
T Consensus        16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             EEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             ceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            57899999983245555678999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	312
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (158), Expect = 7e-13
 Identities = 34/216 (15%), Positives = 73/216 (33%), Gaps = 26/216 (12%)

Query: 8   SDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS 67
            D   +++   +         +   +  +  +  +    A   +D+  RV+ +      +
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKA 179

Query: 68  PISSDTPVDTFC------PRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLG 121
            +     V              I +     T  +      LL    D+ + +++ + G  
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-- 237

Query: 122 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 181
                                GH N   V+GV  F    ++++S +D   L +W  K  +
Sbjct: 238 --------------MCLMTLVGHDNW--VRGV-LFHSGGKFILSCADDKTLRVWDYKNKR 280

Query: 182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 217
            ++ +    H V  L+ H   P   T  +++TVK+W
Sbjct: 281 CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 3/162 (1%)

Query: 134 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 193
           +  E    SGHR+   V  V F  P    ++S S+   + +W  + G   R + G    V
Sbjct: 6   RPPEKYALSGHRSP--VTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 62

Query: 194 NQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD 253
             +       + A+C  + T+KLW     +        +  + +          ++ + D
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122

Query: 254 VIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSD 295
             + +  +Q    +                ++G       +D
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 164

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 22/163 (13%), Positives = 59/163 (36%), Gaps = 35/163 (21%)

Query: 15  FYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP 74
              S   E+S   ++    +      +   +   G  D+  +++D+              
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM---------- 238

Query: 75  VDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQ 133
               C   L+G +N  + G+ + +  + ++S  +D+ + ++                D +
Sbjct: 239 ----CLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVW----------------DYK 277

Query: 134 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 176
            +   +  + H +   V  ++F      YV++GS    + +W+
Sbjct: 278 NKRCMKTLNAHEHF--VTSLDF-HKTAPYVVTGSVDQTVKVWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 8e-12
 Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 22/185 (11%)

Query: 40  PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT 99
           P +  Y A G  D   RV+D         + S+    T             +  + ++  
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS--------VYSVVFTRD 265

Query: 100 SELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 158
            + ++S   D  V L+        S                  +   +   V  V     
Sbjct: 266 GQSVVSGSLDRSVKLWNLQNANNKSD------SKTPNSGTCEVTYIGHKDFVLSV-ATTQ 318

Query: 159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV------NQLEPHPHIPMFATCGIEK 212
           NDEY++SGS    +  W KK G  + ++ G R+ V      N     P   +FAT   + 
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 378

Query: 213 TVKLW 217
             ++W
Sbjct: 379 KARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 24/172 (13%)

Query: 9   DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP 68
           DS T        SEN     +   + ++V    +      G  D   ++++++  +    
Sbjct: 233 DSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANN--- 288

Query: 69  ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSL 127
            S     ++         +   +  +A +   E ++S   D  V  +             
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW------------- 335

Query: 128 SPEDLQKREEPQVYSGHRNSQT---VKGVNFFGPNDEYVMSGSDCGHLFIWK 176
              D +      +  GHRNS     V   +  GP      +GS      IWK
Sbjct: 336 ---DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.7 bits (135), Expect = 8e-10
 Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 33/175 (18%)

Query: 44  NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 103
             F  G  D  A+++D+R+                C +   G  +  I  + +       
Sbjct: 197 RLFVSGACDASAKLWDVREGM--------------CRQTFTGHES-DINAICFFPNGNAF 241

Query: 104 IS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 162
            +  +D    LF+                    +E   YS       +  V+F   +   
Sbjct: 242 ATGSDDATCRLFDLRA----------------DQELMTYSHDNIICGITSVSF-SKSGRL 284

Query: 163 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 217
           +++G D  +  +W         ++ G  + V+ L         AT   +  +K+W
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 1/62 (1%)

Query: 156 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 215
           F    ++ +S      L  W+   G  +     +   V   +         T   +K   
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKAT 331

Query: 216 LW 217
           ++
Sbjct: 332 VY 333

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 156 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKT 213
           +  +   +    +   + I++K G K V++     H   V  ++  P      TCG ++ 
Sbjct: 15  WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 74

Query: 214 VKLWAPMP 221
             +W    
Sbjct: 75  AYVWTLKG 82

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 1e-05
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 144 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK-KKGGKLVRLMVGDRHVVNQLEPHPHI 202
                  KG N     ++ V +GS   ++FI+  K+  K+++ +   +  VN L      
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP- 269

Query: 203 PMFATCGIEKTVKLW 217
               + G +  +K W
Sbjct: 270 STLVSSGADACIKRW 284

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 131 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 190
              + + P+V  GH +      +         ++SGSD   L +W    GK +R +VG  
Sbjct: 2   RRGELKSPKVLKGHDDH----VITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 191 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221
             V   +   +I +  +      V       
Sbjct: 58  GGVWSSQMRDNIIISGSTDRTLKVWNAETGE 88

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 131 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 190
           D +         GH N            +  +V+SGS    + +W  + G  +  + G +
Sbjct: 163 DPETETCLHTLQGHTNRV-----YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 217

Query: 191 HVVNQLEPHPHIPMFATCGIEKTVKLW 217
            + + +E   +  +  +   + TVK+W
Sbjct: 218 SLTSGMELKDN--ILVSGNADSTVKIW 242

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (97), Expect = 5e-05
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 158 PNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 216
           P+   + S S    + IW     K+ + + VG R    QL          +      +  
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307

Query: 217 WAP 219
             P
Sbjct: 308 VNP 310

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 8e-05
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 144 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHI 202
             +   +  +  F  +D  ++SGS+     I+  + GKLV   ++ D   +  +      
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT 336

Query: 203 PMFATCGIEKTVKLW 217
            + A    +    L 
Sbjct: 337 -LVAAVEKDGQSFLE 350

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 16/65 (24%), Positives = 29/65 (44%)

Query: 144 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP 203
           H  S+T KGV     +D+ ++SG     + IW K   +  R++ G    V  L+    + 
Sbjct: 9   HCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68

Query: 204 MFATC 208
           +  + 
Sbjct: 69  ITGSS 73

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 22/184 (11%), Positives = 53/184 (28%), Gaps = 12/184 (6%)

Query: 42  NPNYFAVGGSDEYARVYDIR--------KCHWYSPISSDTPVDTFCPRHLIGKNNIHITG 93
           +      G  D   +++D            H  S +                   +    
Sbjct: 24  DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 83

Query: 94  LAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 153
                 + +        +      M       S++  D+    +  +       +    V
Sbjct: 84  TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 143

Query: 154 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKT 213
             F  +D+Y++S S    + +W     + VR + G +  +  L+      +  +   + T
Sbjct: 144 VDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNT 199

Query: 214 VKLW 217
           ++LW
Sbjct: 200 IRLW 203

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 16/96 (16%)

Query: 131 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW---------KKKGGK 181
           D++     +V  GH              +++ ++SG+  G + +W            G  
Sbjct: 204 DIECGACLRVLEGHEELV-----RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258

Query: 182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 217
            +R +V     V +L+         +   + T+ +W
Sbjct: 259 CLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIW 292

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 7/46 (15%), Positives = 18/46 (39%)

Query: 131 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 176
           D+   +  Q ++  +     + V      +  ++S S  G L  ++
Sbjct: 279 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 13/187 (6%), Positives = 40/187 (21%), Gaps = 10/187 (5%)

Query: 39  DPRNPNYFAVGGSDEYARVYDI---RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA 95
           D    +            ++             ++    ++           +   T + 
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191

Query: 96  YSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 155
            S    +   +N+  V + E +        +   +         + S   + Q       
Sbjct: 192 ISERGLIATGFNNGTVQISELSTL--RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249

Query: 156 FGPNDEYVMSGSDCGHL-----FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI 210
              N    ++  +                 +           V  L  +       + G 
Sbjct: 250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 309

Query: 211 EKTVKLW 217
           +  ++ W
Sbjct: 310 DGKLRFW 316

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (85), Expect = 0.001
 Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 154 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH---VVNQLEPHPHIPMFATCGI 210
             + P++  + +GS    + +W         +++   H    VN +          + G 
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE-TTIVSAGQ 288

Query: 211 EKTVKLW 217
           +  +K W
Sbjct: 289 DSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 139 QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLE 197
           QV  GH  +  +  ++    + + + S    GH+  W    G   R        ++  ++
Sbjct: 6   QVRYGHNKA--ITALSS-SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 198 PHPHIPMFATCGIEKTVKLWA 218
                 +F     +    + A
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPA 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.79
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.75
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.74
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.72
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.69
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.64
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.54
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.46
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.42
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.4
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.4
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.37
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.32
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.23
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.18
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.16
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.12
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.95
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.93
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.88
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.8
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.78
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.74
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.7
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.65
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.64
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.55
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.54
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.47
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.44
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.29
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.24
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.23
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.19
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.18
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.06
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.03
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.63
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.4
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.17
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.9
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.79
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.71
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.12
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.99
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.3
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.68
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.62
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.57
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.41
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.26
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.06
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.78
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.65
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.67
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	89.87
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.61
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	88.09
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.04
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	84.82
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	81.54
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	80.61

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.4e-35  Score=240.15  Aligned_cols=248  Identities=13%  Similarity=0.193  Sum_probs=192.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |.+||+.+.....++.           +|...|++++|+|++ ++|++|+.||+|++||+.+.+.             ..
T Consensus        40 v~i~~~~~~~~~~~~~-----------~H~~~v~~~~~sp~g-~~latg~~dg~i~iwd~~~~~~-------------~~   94 (311)
T d1nr0a1          40 VYTVPVGSLTDTEIYT-----------EHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTH-------------IL   94 (311)
T ss_dssp             EEEEETTCSSCCEEEC-----------CCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTC-------------CE
T ss_pred             EEEEECCCCceeEEEc-----------CCCCCEEEEEEeCCC-CeEeccccCceEeeeeeecccc-------------cc
Confidence            3567776655444442           488999999999998 8999999999999999987652             11


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEec---CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISYN---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  157 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s  157 (312)
                      ...+..|..+|.+++|+|++++|++++   +..+++|++.++                +....+.+|...  |.+++| +
T Consensus        95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~----------------~~~~~l~~h~~~--v~~v~~-~  155 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG----------------TSNGNLTGQARA--MNSVDF-K  155 (311)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC----------------CBCBCCCCCSSC--EEEEEE-C
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccc----------------cccccccccccc--cccccc-c
Confidence            222367899999999999999888753   566999999887                677778888866  999999 8


Q ss_pred             CCCCE-EEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC--------CCCC
Q 021484          158 PNDEY-VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF--------PPLP  228 (312)
Q Consensus       158 ~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~--------~~~~  228 (312)
                      |++++ |++|+.|+.|++||+++++....+..|...|+++.|+|+++++++++.|+.|++||+.....        ....
T Consensus       156 ~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~  235 (311)
T d1nr0a1         156 PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV  235 (311)
T ss_dssp             SSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred             ccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccc
Confidence            98885 78899999999999999999999999999999999999999999999999999999887541        1223


Q ss_pred             CChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcccee-----------EeecCCCccCCCCCCCeEEEeec
Q 021484          229 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR-----------ERRYNAADFESDEEEGETYLLGF  293 (312)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~  293 (312)
                      +|...+. ...+++++.++++++.|+.|++||+++.......           ...+....+.+...+|.|.+||.
T Consensus       236 ~h~~~V~-~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         236 AHSGSVF-GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             SSSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             ccccccc-ccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence            4555554 4457888999999999999999998765332111           12223344444455556666653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-33  Score=232.26  Aligned_cols=252  Identities=10%  Similarity=0.066  Sum_probs=200.0

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+|||+.+......+.....      .+|...|.+++|+|++ ++|++|+.||.|++||+.....             ..
T Consensus        74 V~iWd~~~~~~~~~~~~~~~------~~h~~~I~~v~~s~dg-~~l~s~~~dg~i~iwd~~~~~~-------------~~  133 (337)
T d1gxra_          74 VKVWDISHPGNKSPVSQLDC------LNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTP-------------RI  133 (337)
T ss_dssp             EEEEETTSTTCCSCSEEEEC------SCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC---------------EE
T ss_pred             EEEEEccCCcccceeEEeee------cCCCCcEEEEEEcCCC-CEEEEeeccccccccccccccc-------------cc
Confidence            68999987654433332221      2388999999999999 8999999999999999875531             11


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ...+..|...+..++|+|++.+++++ .++.|++|++.++                +......+|...  +.+++| +++
T Consensus       134 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~----------------~~~~~~~~~~~~--v~~l~~-s~~  194 (337)
T d1gxra_         134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----------------TLVRQFQGHTDG--ASCIDI-SND  194 (337)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-CTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccc----------------cccccccccccc--cccccc-ccc
Confidence            12226788899999999999988886 5999999999887                666777778766  999999 999


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhc
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANK  239 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  239 (312)
                      ++++++++.|+.+++||+++++.+..+. |...|.+++|+|+++++++++.|+.|++||++.........|...+ ....
T Consensus       195 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i-~~v~  272 (337)
T d1gxra_         195 GTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV-LSLK  272 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCE-EEEE
T ss_pred             ccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccccccccccccccc-ceEE
Confidence            9999999999999999999999887765 7889999999999999999999999999999988765555566665 4445


Q ss_pred             cCCCCceeEEecCCceEEEEEecccCccce---------eEeecCCCccCCCCCCCeEEEeec
Q 021484          240 QGREDHSRITLTPDVIMHVLRLQRRQTLAY---------RERRYNAADFESDEEEGETYLLGF  293 (312)
Q Consensus       240 ~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~  293 (312)
                      +++++.++++++.|+.+++|++........         ..+.+++..+.+...++.|.+|++
T Consensus       273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            788899999999999999999876543311         245666666666666666776663

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.9e-33  Score=227.98  Aligned_cols=214  Identities=11%  Similarity=0.119  Sum_probs=176.5

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||.++|++++|+|++ .+|++|+.||+|++||+.+++.              ...+ ..|...|.+++|+|++.+++++
T Consensus        52 ~GH~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~~~~--------------~~~~-~~~~~~v~~v~~~~~~~~l~~~  115 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNK--------------VHAI-PLRSSWVMTCAYAPSGNYVACG  115 (340)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEE--------------EEEE-ECSCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCCCEEEEEECCCC-CEEEEEECCCceeeeeccccee--------------EEEE-ecccccEEeeEeeccceeeeee
Confidence            4799999999999998 8999999999999999998872              2222 6788999999999999988886


Q ss_pred             -cCCcEEEEEcCCCcCC---------------------------------------------------------------
Q 021484          107 -NDELVYLFEKNMGLGP---------------------------------------------------------------  122 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~---------------------------------------------------------------  122 (312)
                       .|+.+++|+.......                                                               
T Consensus       116 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (340)
T d1tbga_         116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD  195 (340)
T ss_dssp             ETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTT
T ss_pred             cccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccc
Confidence             5999999997654200                                                               


Q ss_pred             --------CCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee--cCccc
Q 021484          123 --------SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV--GDRHV  192 (312)
Q Consensus       123 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~  192 (312)
                              .+..+..|++.+.+....+.+|...  |++++| +|++++|++|+.||.|++||++..+.+..+.  .+...
T Consensus       196 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~--i~~v~~-~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~  272 (340)
T d1tbga_         196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESD--INAICF-FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG  272 (340)
T ss_dssp             SSEEEEEETTTEEEEEETTTTEEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred             cceeEEeecCceEEEEECCCCcEEEEEeCCCCC--eEEEEE-CCCCCEEEEEeCCCeEEEEeecccccccccccccccCc
Confidence                    0112223334555666777788766  999999 9999999999999999999999988877664  45678


Q ss_pred             eEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          193 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       193 v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      |.+++|+|++++|++|+.||.|++||+.+++. ..+.+|...+.. ..+++++.++++++.|+.|++||
T Consensus       273 i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~-l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE-EEECTTSSCEEEEETTSCEEEEC
T ss_pred             eEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEE-EEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999999999999988764 667777777644 45788999999999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.4e-32  Score=222.84  Aligned_cols=217  Identities=13%  Similarity=0.191  Sum_probs=172.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeC--CCeEEEEEccCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS--DEYARVYDIRKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~   78 (312)
                      |++||+++..........         +|..+|.+++|+|++ ++|++++.  +..+++|++++++.             
T Consensus        82 i~iwd~~~~~~~~~~~~~---------~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~~-------------  138 (311)
T d1nr0a1          82 VRIWDTTQTTHILKTTIP---------VFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTS-------------  138 (311)
T ss_dssp             EEEEESSSTTCCEEEEEE---------CSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCB-------------
T ss_pred             Eeeeeeeccccccccccc---------cccCccccccccccc-cccccccccccccccccccccccc-------------
Confidence            579999876643332221         378899999999998 67877765  56699999998762             


Q ss_pred             cccccccCCCccEEEEEEccCCCe-EEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe
Q 021484           79 CPRHLIGKNNIHITGLAYSNTSEL-LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  156 (312)
Q Consensus        79 ~~~~~~~~~~~~i~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  156 (312)
                       ... +.+|...|.+++|+|++++ |+++ .|+.|++||++++                +....+..|...  |.++.| 
T Consensus       139 -~~~-l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~----------------~~~~~~~~~~~~--i~~v~~-  197 (311)
T d1nr0a1         139 -NGN-LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF----------------KFKSTFGEHTKF--VHSVRY-  197 (311)
T ss_dssp             -CBC-CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB----------------EEEEEECCCSSC--EEEEEE-
T ss_pred             -ccc-ccccccccccccccccceeeeccccccccccccccccc----------------cccccccccccc--cccccc-
Confidence             222 3788999999999999984 6666 5999999999987                677778888866  999999 


Q ss_pred             cCCCCEEEEeccCceEEEEeccCCeeEEEee-------cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCC
Q 021484          157 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP  228 (312)
Q Consensus       157 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~  228 (312)
                      +|++++|++++.|+.|++||+.+++.+..+.       +|.+.|++++|+|++++|++|+.||+|+|||++++++ .++.
T Consensus       198 ~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~  277 (311)
T d1nr0a1         198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP  277 (311)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEE
Confidence            9999999999999999999999988877664       5788999999999999999999999999999998864 3443


Q ss_pred             CChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          229 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .+.........+..++..+++++.||.|++||.
T Consensus       278 ~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         278 VGTRIEDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             CCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             CCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence            333222222223345678999999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-31  Score=216.23  Aligned_cols=250  Identities=10%  Similarity=0.092  Sum_probs=179.6

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||..+|++++|+|++ ++|++|+.||+|++||+.+++              +...+...|...|++++|+|++++++++
T Consensus         9 ~GH~~~V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~~~--------------~~~~~~~~h~~~v~~v~~~~~g~~~~~~   73 (299)
T d1nr0a2           9 YGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGI--------------SNRVFPDVHATMITGIKTTSKGDLFTVS   73 (299)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC--------------EEECSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred             CCCCCCcEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--------------EEEEEcCCCCCcEEEEEeeccceeeccc
Confidence            4799999999999998 899999999999999999887              3333436789999999999999988888


Q ss_pred             cCCcEEEEEcCCCcCCCCCcC------Cccc--cc-CCC--------CCceEe-----cccCCceeeEEEEecCCCCEEE
Q 021484          107 NDELVYLFEKNMGLGPSPLSL------SPED--LQ-KRE--------EPQVYS-----GHRNSQTVKGVNFFGPNDEYVM  164 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~------~~~~--~~-~~~--------~~~~~~-----~~~~~~~v~~v~~~s~~~~~l~  164 (312)
                      .|+.+++|+............      .+..  +. ...        .+..+.     .......+.+++| +|++++|+
T Consensus        74 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~  152 (299)
T d1nr0a2          74 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL-SNDKQFVA  152 (299)
T ss_dssp             TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE-CTTSCEEE
T ss_pred             ceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            999999999865421100000      0000  00 000        000000     0001122788898 89999999


Q ss_pred             EeccCceEEEEeccCCeeEE-EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC----CCCCCCChhhhhhhhc
Q 021484          165 SGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANK  239 (312)
Q Consensus       165 ~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~  239 (312)
                      +|+.||.|++||+++++... ....|...|++++|+|++++|++++.|+.|++||+.++.    ...+..|...+. ...
T Consensus       153 ~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~-~l~  231 (299)
T d1nr0a2         153 VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA-CVS  231 (299)
T ss_dssp             EEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEE-EEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            99999999999999877654 345688999999999999999999999999999987654    244555666654 445


Q ss_pred             cCCCCceeEEecCCceEEEEEecccCccce------------eEeecCCCccCCCCCCCeEEEeec
Q 021484          240 QGREDHSRITLTPDVIMHVLRLQRRQTLAY------------RERRYNAADFESDEEEGETYLLGF  293 (312)
Q Consensus       240 ~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~  293 (312)
                      +++++.++++++.|+.+++|++........            ....++...+.+...++.|.+||+
T Consensus       232 ~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             ccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEec
Confidence            788999999999999999999876432211            122233444555555666666664

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-31  Score=220.39  Aligned_cols=240  Identities=14%  Similarity=0.107  Sum_probs=192.1

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      +|..+|++++|+|++ ++|++|+ ||.|+|||+.+......      +    .......|...|.+++|+|++++|+++ 
T Consensus        49 ~H~~~V~~v~fs~~g-~~latg~-dg~V~iWd~~~~~~~~~------~----~~~~~~~h~~~I~~v~~s~dg~~l~s~~  116 (337)
T d1gxra_          49 NHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKSP------V----SQLDCLNRDNYIRSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             CCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCSC------S----EEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred             CCCCcEEEEEECCCC-CEEEEEE-CCEEEEEEccCCcccce------e----EEeeecCCCCcEEEEEEcCCCCEEEEee
Confidence            489999999999999 8999987 89999999987642111      1    111225788999999999999999886 


Q ss_pred             cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484          107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  186 (312)
                      .|+.|++||+....              .+....+..|...  +..++| +|++.++++++.++.|++|++.++++....
T Consensus       117 ~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~--v~~~~~-~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~  179 (337)
T d1gxra_         117 EASTLSIWDLAAPT--------------PRIKAELTSSAPA--CYALAI-SPDSKVCFSCCSDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             SSSEEEEEECCCC----------------EEEEEEECSSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             cccccccccccccc--------------ccccccccccccc--cccccc-cccccccccccccccccccccccccccccc
Confidence            69999999987541              1344556677755  999999 999999999999999999999999999999


Q ss_pred             ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484          187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      ..|...|.+++|+|++..+++++.|+.|++||+++++......+...+. ...+.+++.++++++.|+.+++|+++....
T Consensus       180 ~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~  258 (337)
T d1gxra_         180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF-SLGYCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             cccccccccccccccccccccccccccccccccccceeecccccccceE-EEEEcccccccceecccccccccccccccc
Confidence            9999999999999999999999999999999998876432223444443 344678889999999999999999876532


Q ss_pred             c---------ceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          267 L---------AYRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       267 ~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      .         ....+.+++..+.+...++.|.+++...+.
T Consensus       259 ~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC
Confidence            2         112567788888888888899999987664

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.5e-30  Score=211.77  Aligned_cols=217  Identities=14%  Similarity=0.225  Sum_probs=171.1

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCC-CCCccccccc-------------------------
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-DTPVDTFCPR-------------------------   81 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~-------------------------   81 (312)
                      ||.++|++++|+|++ ++|++|+.||+|++||+.++++...... ...+......                         
T Consensus        15 GH~~~I~~l~~sp~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC   93 (317)
T ss_dssp             CCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred             CCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccc
Confidence            599999999999998 7999999999999999998875543321 1111111000                         


Q ss_pred             -ccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           82 -HLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        82 -~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                       .....|...+.++.|+|++..++++ .|+.+++||+.++                +....+.+|...  +.+++| +++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----------------~~~~~~~~~~~~--~~~~~~-~~~  154 (317)
T d1vyhc1          94 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----------------YCVKTFTGHREW--VRMVRP-NQD  154 (317)
T ss_dssp             EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-CTT
T ss_pred             ccccccccccceeeeccCCCceEEeeccCcceeEeecccc----------------eeeeEEccCCCc--ceeeec-ccC
Confidence             0112456667777777777766665 5778888887766                677888888866  999999 999


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC--------------------CeEEEEeCCCcEEEccC
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI--------------------PMFATCGIEKTVKLWAP  219 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~--------------------~~l~t~~~d~~i~iwd~  219 (312)
                      +++|++++.|+.|++|++.+++.+..+..|...+..++|+|++                    ..+++++.|+.|++|++
T Consensus       155 ~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  234 (317)
T d1vyhc1         155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV  234 (317)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred             CCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEEC
Confidence            9999999999999999999999999999999999999998864                    46889999999999999


Q ss_pred             CCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484          220 MPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       220 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~  265 (312)
                      ++++. ..+.+|...+. ...+++++.++++++.|+.|++||+.+..
T Consensus       235 ~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  280 (317)
T d1vyhc1         235 STGMCLMTLVGHDNWVR-GVLFHSGGKFILSCADDKTLRVWDYKNKR  280 (317)
T ss_dssp             TTTEEEEEEECCSSCEE-EEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred             CCCcEEEEEeCCCCCEE-EEEECCCCCEEEEEECCCeEEEEECCCCc
Confidence            88763 55556666553 34577889999999999999999987654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.7e-30  Score=217.93  Aligned_cols=204  Identities=12%  Similarity=0.170  Sum_probs=161.3

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND  108 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d  108 (312)
                      ..+|+|++|+|++ ++||+|+.||.|++||+.+++.             .....+.+|..+|.+++|+|++++|+++ .|
T Consensus         7 ~~pIt~~~~s~dg-~~la~~~~~~~i~iw~~~~~~~-------------~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D   72 (371)
T d1k8kc_           7 VEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKW-------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTD   72 (371)
T ss_dssp             SSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEE-------------EEEEEEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCeEEEEECCCC-CEEEEEeCCCEEEEEECCCCCE-------------EEEEEecCCCCCEEEEEECCCCCEEEEEECC
Confidence            5689999999999 8999999999999999987753             1222337899999999999999999987 59


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee----EE
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL----VR  184 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~----~~  184 (312)
                      +.|++||+.++.              .+....+.+|...  |.+++| +|++++|++++.|+.+++|++.....    ..
T Consensus        73 ~~i~vWd~~~~~--------------~~~~~~~~~~~~~--v~~i~~-~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~  135 (371)
T d1k8kc_          73 RNAYVWTLKGRT--------------WKPTLVILRINRA--ARCVRW-APNEKKFAVGSGSRVISICYFEQENDWWVCKH  135 (371)
T ss_dssp             SCEEEEEEETTE--------------EEEEEECCCCSSC--EEEEEE-CTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred             CeEEEEeecccc--------------ccccccccccccc--cccccc-ccccccceeecccCcceeeeeecccccccccc
Confidence            999999997651              0223334456654  999999 99999999999999999999876543    23


Q ss_pred             EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC-------------------CCCChhhhhhhhccCCCCc
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-------------------LPDNAEKIMKANKQGREDH  245 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~  245 (312)
                      ....|...|.+++|+|++++|++++.|++|++|+........                   ...|...+ ....+++++.
T Consensus       136 ~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~  214 (371)
T d1k8kc_         136 IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV-HGVCFSANGS  214 (371)
T ss_dssp             ECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE-EEEEECSSSS
T ss_pred             cccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcE-EEEEeecccc
Confidence            345688899999999999999999999999999986543211                   11223333 3345778889


Q ss_pred             eeEEecCCceEEEEEecccC
Q 021484          246 SRITLTPDVIMHVLRLQRRQ  265 (312)
Q Consensus       246 ~l~s~~~d~~i~i~~~~~~~  265 (312)
                      ++++++.|+.+++||+....
T Consensus       215 ~l~s~~~d~~i~iwd~~~~~  234 (371)
T d1k8kc_         215 RVAWVSHDSTVCLADADKKM  234 (371)
T ss_dssp             EEEEEETTTEEEEEEGGGTT
T ss_pred             cccccccCCcceEEeeeccc
Confidence            99999999999999987653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.9e-29  Score=212.16  Aligned_cols=248  Identities=13%  Similarity=0.210  Sum_probs=185.2

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccc---ccccccccCCCccEEEEEEccCCCeEE
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT---FCPRHLIGKNNIHITGLAYSNTSELLI  104 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~  104 (312)
                      +|.+.|+|++|+|+| ++|++|+ |++|++||+.++++............   .........|...|++++|+|++++|+
T Consensus        60 ~H~~~V~~l~fs~dg-~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          60 DHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             ECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCcEEEEEECCCC-CEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            389999999999999 7999986 89999999998876543322111100   001111246788899999999999999


Q ss_pred             Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484          105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                      ++ .|+.|++|+...+                +....+.+|...  |.++++ ++++..+++++.++.+++||..+....
T Consensus       138 s~~~dg~v~i~~~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~~~~~~~~~~~~i~~~d~~~~~~~  198 (388)
T d1erja_         138 TGAEDRLIRIWDIENR----------------KIVMILQGHEQD--IYSLDY-FPSGDKLVSGSGDRTVRIWDLRTGQCS  198 (388)
T ss_dssp             EEETTSCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eccccccccccccccc----------------cccccccccccc--cccccc-ccccccccccccceeeeeeeccccccc
Confidence            87 5999999999887                677778888866  999999 899999999999999999999998888


Q ss_pred             EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC--------CCCCCChhhhhhhhccCCCCceeEEecCCce
Q 021484          184 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF--------PPLPDNAEKIMKANKQGREDHSRITLTPDVI  255 (312)
Q Consensus       184 ~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  255 (312)
                      .....+...+....+.+++.+|++++.|+.|++|+..++..        ....+|...+ ....+++++.++++++.|+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~s~~~~~l~s~~~d~~  277 (388)
T d1erja_         199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV-YSVVFTRDGQSVVSGSLDRS  277 (388)
T ss_dssp             EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE-EEEEECTTSSEEEEEETTSE
T ss_pred             cccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCE-EEEEECCCCCEEEEEECCCc
Confidence            77776655554444455788999999999999999987652        1122344445 34457788999999999999


Q ss_pred             EEEEEecccCcc----------------------ceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          256 MHVLRLQRRQTL----------------------AYRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       256 i~i~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      +++|++......                      ....+.+++..+.++..++.|+++|...+.
T Consensus       278 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~  341 (388)
T d1erja_         278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN  341 (388)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            999998653211                      112566777788888888899999987664

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1e-29  Score=213.74  Aligned_cols=257  Identities=16%  Similarity=0.217  Sum_probs=184.5

Q ss_pred             CeeecccCccceeeEEeccccc-------CCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCC
Q 021484            1 MWQFDLRSDSATRLFYCSSFSE-------NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT   73 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~   73 (312)
                      |+|||+.+.+....+.......       ....++|...|++++|+|++ ++|++|+.||.|++|+...++.        
T Consensus        85 i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~~l~s~~~dg~v~i~~~~~~~~--------  155 (388)
T d1erja_          85 TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKI--------  155 (388)
T ss_dssp             EEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE--------
T ss_pred             EEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCC-Ccceeccccccccccccccccc--------
Confidence            5899998776544332221110       01114688899999999998 8999999999999999998862        


Q ss_pred             CcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeE
Q 021484           74 PVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  152 (312)
Q Consensus        74 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  152 (312)
                            .... .+|...|.++++++++..++++ .++.+++||..+.                ........+..   ..+
T Consensus       156 ------~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----------------~~~~~~~~~~~---~~~  209 (388)
T d1erja_         156 ------VMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG----------------QCSLTLSIEDG---VTT  209 (388)
T ss_dssp             ------EEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----------------EEEEEEECSSC---EEE
T ss_pred             ------cccc-ccccccccccccccccccccccccceeeeeeecccc----------------ccccccccccc---ccc
Confidence                  2222 6789999999999999888776 6999999999876                44444443332   555


Q ss_pred             EEEecCCCCEEEEeccCceEEEEeccCCeeEEEee-------cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC
Q 021484          153 VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP  225 (312)
Q Consensus       153 v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~  225 (312)
                      +.++++++++|++++.||.|++|+..+++.+..+.       +|...|.+++|+|++++|++++.|+.|++||+......
T Consensus       210 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~  289 (388)
T d1erja_         210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK  289 (388)
T ss_dssp             EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred             ccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccc
Confidence            66657789999999999999999999888766553       57889999999999999999999999999998865421


Q ss_pred             C-C------------CCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcccee----------------EeecCC
Q 021484          226 P-L------------PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR----------------ERRYNA  276 (312)
Q Consensus       226 ~-~------------~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~----------------~~~~~~  276 (312)
                      . .            ..|...+ ....+++++.++++++.|+.|++||+.+.......                .+.|++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~  368 (388)
T d1erja_         290 SDSKTPNSGTCEVTYIGHKDFV-LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY  368 (388)
T ss_dssp             ---------CEEEEEECCSSCE-EEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred             cccccccccceeeecccccceE-EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCC
Confidence            1 1            1122333 33446778899999999999999998766433211                123344


Q ss_pred             CccCCCCCCCeEEEeec
Q 021484          277 ADFESDEEEGETYLLGF  293 (312)
Q Consensus       277 ~~~~~~~~~~~v~~~~~  293 (312)
                      ..+++...++.|.+|++
T Consensus       369 ~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         369 NVFATGSGDCKARIWKY  385 (388)
T ss_dssp             EEEEEEETTSEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEee
Confidence            55666666777777775

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.8e-29  Score=204.25  Aligned_cols=198  Identities=15%  Similarity=0.250  Sum_probs=169.3

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .+|...+.++.|+|++ ..+++++.|+.+++||+++++.              ...+ ..|...+.+++|+|++.+|+++
T Consensus        98 ~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~l~~~  161 (317)
T d1vyhc1          98 HGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYC--------------VKTF-TGHREWVRMVRPNQDGTLIASC  161 (317)
T ss_dssp             CCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCE--------------EEEE-ECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccceeeeccCCC-ceEEeeccCcceeEeeccccee--------------eeEE-ccCCCcceeeecccCCCEEEEE
Confidence            3678889999999988 7899999999999999998762              2222 6788899999999999999986


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC--------------------CCEEEE
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--------------------DEYVMS  165 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~--------------------~~~l~~  165 (312)
                       .|+.|++|++.++                +....+.++...  +.+++| +++                    +.++++
T Consensus       162 ~~d~~v~~~~~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (317)
T d1vyhc1         162 SNDQTVRVWVVATK----------------ECKAELREHRHV--VECISW-APESSYSSISEATGSETKKSGKPGPFLLS  222 (317)
T ss_dssp             ETTSCEEEEETTTC----------------CEEEEECCCSSC--EEEEEE-CCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             eCCCeEEEEeeccc----------------eeeEEEecCCCC--ceEEEE-eeccccceeeccccceeeeeccCCceeEe
Confidence             5999999999887                566667777655  777777 554                    457899


Q ss_pred             eccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCC
Q 021484          166 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGRED  244 (312)
Q Consensus       166 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~  244 (312)
                      ++.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.||.|++||+.+++ +..+.+|...+.. ..+++++
T Consensus       223 ~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~-~~~s~~~  301 (317)
T d1vyhc1         223 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS-LDFHKTA  301 (317)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEE-EEECSSS
T ss_pred             ccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEE-EEEcCCC
Confidence            9999999999999999999999999999999999999999999999999999998876 4566677776644 4578889


Q ss_pred             ceeEEecCCceEEEEE
Q 021484          245 HSRITLTPDVIMHVLR  260 (312)
Q Consensus       245 ~~l~s~~~d~~i~i~~  260 (312)
                      .++++++.|+.|++|+
T Consensus       302 ~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         302 PYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEETTSEEEEEC
T ss_pred             CEEEEEeCCCeEEEeC
Confidence            9999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.2e-29  Score=212.75  Aligned_cols=223  Identities=12%  Similarity=0.066  Sum_probs=168.4

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+++...+...         .+|..+|++++|+|++ ++|++|+.|++|++||+.++...             .
T Consensus        31 i~iw~~~~~~~~~~~~l---------~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~~~~~-------------~   87 (371)
T d1k8kc_          31 VHIYEKSGNKWVQVHEL---------KEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWK-------------P   87 (371)
T ss_dssp             EEEEEEETTEEEEEEEE---------ECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEEE-------------E
T ss_pred             EEEEECCCCCEEEEEEe---------cCCCCCEEEEEECCCC-CEEEEEECCCeEEEEeecccccc-------------c
Confidence            57899876653333322         1489999999999998 89999999999999999877521             1


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      ...+..|...|++++|+|+++.|+++ .|+.+++|++.....            ..........|...  |.+++| +|+
T Consensus        88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~------------~~~~~~~~~~~~~~--v~~v~~-~p~  152 (371)
T d1k8kc_          88 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND------------WWVCKHIKKPIRST--VLSLDW-HPN  152 (371)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT------------EEEEEEECTTCCSC--EEEEEE-CTT
T ss_pred             ccccccccccccccccccccccceeecccCcceeeeeecccc------------cccccccccccccc--cccccc-ccc
Confidence            22225788899999999999988886 599999999876510            00011222345544  999999 999


Q ss_pred             CCEEEEeccCceEEEEeccC------------------CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          160 DEYVMSGSDCGHLFIWKKKG------------------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                      +++|++|+.|+.|++|+...                  ++.+.....|...|.+++|+|+++.|++++.|++|++||+..
T Consensus       153 ~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec
Confidence            99999999999999999753                  235566678889999999999999999999999999999987


Q ss_pred             CCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484          222 TDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  263 (312)
Q Consensus       222 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~  263 (312)
                      +.. ..+..|..++.. ..+++++.+++++. |+.+++|....
T Consensus       233 ~~~~~~~~~~~~~v~s-~~fs~d~~~la~g~-d~~~~~~~~~~  273 (371)
T d1k8kc_         233 KMAVATLASETLPLLA-VTFITESSLVAAGH-DCFPVLFTYDS  273 (371)
T ss_dssp             TTEEEEEECSSCCEEE-EEEEETTEEEEEET-TSSCEEEEEET
T ss_pred             ccceeeeeccccccee-eeecCCCCEEEEEc-CCceEEEEeeC
Confidence            663 445555555543 44677777666554 77777776543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-28  Score=203.10  Aligned_cols=212  Identities=13%  Similarity=0.149  Sum_probs=163.2

Q ss_pred             CC-ccceEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           28 MN-SIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        28 ~h-~~~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      +| ...|++++|+|. +..+|++|+.||+|++||+..++.....       ..........|..+|.+++|+++++++++
T Consensus        60 gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~-------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          60 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV-------EVNVKSEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE-------EEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeee-------ecccccccccccCcEEEEEECCCCCccce
Confidence            45 568999999984 2279999999999999999866522110       00111122567889999999999997766


Q ss_pred             e-c--CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCE-EEEeccCceEEEEeccCCe
Q 021484          106 Y-N--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGK  181 (312)
Q Consensus       106 ~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~-l~~~~~dg~v~iwd~~~~~  181 (312)
                      + .  ++.+.+|+..++                +.+..+.+|...  |.+++| +|++.+ +++++.|+.+++||..+.+
T Consensus       133 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~~~~~~~~~~d~~v~~~d~~~~~  193 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSG----------------NSLGEVSGHSQR--INACHL-KQSRPMRSMTVGDDGSVVFYQGPPFK  193 (325)
T ss_dssp             EECCSSCSEEEEETTTC----------------CEEEECCSCSSC--EEEEEE-CSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred             eeccccceEEEEeeccc----------------ccceeeeecccc--cccccc-cccccceEEEeecccccccccccccc
Confidence            3 2  778999999877                677888888866  999999 888765 6789999999999998887


Q ss_pred             eEEEee---cCccceEEEEEcCC-CCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhcc--CCCCceeEEecCCc
Q 021484          182 LVRLMV---GDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQ--GREDHSRITLTPDV  254 (312)
Q Consensus       182 ~~~~~~---~~~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~l~s~~~d~  254 (312)
                      ....+.   .|...|.+++|+|+ +.++++++.|+.|++||+++++. ..+.+|...+....+.  .+++.++++++.|+
T Consensus       194 ~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~  273 (325)
T d1pgua1         194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA  273 (325)
T ss_dssp             EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS
T ss_pred             cceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCC
Confidence            766654   45678999999997 57899999999999999988774 5566555554332211  14678999999999


Q ss_pred             eEEEEEecccC
Q 021484          255 IMHVLRLQRRQ  265 (312)
Q Consensus       255 ~i~i~~~~~~~  265 (312)
                      .+++||++..+
T Consensus       274 ~i~iwd~~~~~  284 (325)
T d1pgua1         274 TIRVWDVTTSK  284 (325)
T ss_dssp             EEEEEETTTTE
T ss_pred             eEEEEECCCCC
Confidence            99999987654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-28  Score=202.14  Aligned_cols=241  Identities=15%  Similarity=0.182  Sum_probs=166.5

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      ||...|.+ ++++++ ++|++|+.||+|++||+.++++              ...+ .+|...|.+++|+|+  +|+++ 
T Consensus        14 GH~~~V~s-~~~~~g-~~l~sgs~Dg~i~vWd~~~~~~--------------~~~~-~~h~~~V~~v~~~~~--~l~s~s   74 (342)
T d2ovrb2          14 GHDDHVIT-CLQFCG-NRIVSGSDDNTLKVWSAVTGKC--------------LRTL-VGHTGGVWSSQMRDN--IIISGS   74 (342)
T ss_dssp             CSTTSCEE-EEEEET-TEEEEEETTSCEEEEETTTCCE--------------EEEC-CCCSSCEEEEEEETT--EEEEEE
T ss_pred             CcCCceEE-EEEECC-CEEEEEeCCCeEEEEECCCCCE--------------EEEE-eCCCCCEEEEEeCCC--ccccce
Confidence            48888865 355667 7999999999999999998872              2222 789999999999875  77776 


Q ss_pred             cCCcEEEEEcCCCcCC------------------------CC--------------------------------------
Q 021484          107 NDELVYLFEKNMGLGP------------------------SP--------------------------------------  124 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~------------------------~~--------------------------------------  124 (312)
                      .|+.+++|+.......                        .+                                      
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA  154 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred             ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeec
Confidence            5999999998654300                        00                                      


Q ss_pred             --CcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC
Q 021484          125 --LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI  202 (312)
Q Consensus       125 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~  202 (312)
                        ..+..++.........+.+|...  +..  + ++++.++++++.||.|++||++.++++..+.+|...+.++++++  
T Consensus       155 ~d~~i~~~d~~~~~~~~~~~~~~~~--~~~--~-~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--  227 (342)
T d2ovrb2         155 YDFMVKVWDPETETCLHTLQGHTNR--VYS--L-QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--  227 (342)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSC--EEE--E-EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--
T ss_pred             CCCeEEEeecccceeeEEEcCcccc--ccc--c-cCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--
Confidence              11111112222333334444422  333  3 45789999999999999999999999999999999998887754  


Q ss_pred             CeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc--------------
Q 021484          203 PMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL--------------  267 (312)
Q Consensus       203 ~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~--------------  267 (312)
                      ++|++++.|+.|++||+...+. ..+..+............++.++++++.|+.|++||+++++..              
T Consensus       228 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~  307 (342)
T d2ovrb2         228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV  307 (342)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCE
T ss_pred             CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCC
Confidence            6999999999999999987653 2232222222222334456789999999999999998765332              


Q ss_pred             ce-eEeecCCCccCCCCCCC----eEEEeecC
Q 021484          268 AY-RERRYNAADFESDEEEG----ETYLLGFS  294 (312)
Q Consensus       268 ~~-~~~~~~~~~~~~~~~~~----~v~~~~~~  294 (312)
                      ++ ..+.+++..++++..+|    +++++||+
T Consensus       308 v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         308 VWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            11 14455555555544443    47777774

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.8e-28  Score=202.69  Aligned_cols=233  Identities=12%  Similarity=0.139  Sum_probs=169.4

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+|||+.+.+....+.           +|..+|++++|+|+  .+|++|+.|++|++|++...+...             
T Consensus        35 i~vWd~~~~~~~~~l~-----------~H~~~V~~l~~s~~--~~l~s~s~D~~i~iw~~~~~~~~~-------------   88 (355)
T d1nexb2          35 IRVYDSINKKFLLQLS-----------GHDGGVWALKYAHG--GILVSGSTDRTVRVWDIKKGCCTH-------------   88 (355)
T ss_dssp             EEEEETTTTEEEEEEE-----------CCSSCEEEEEEETT--TEEEEEETTCCEEEEETTTTEEEE-------------
T ss_pred             EEEEECCCCcEEEEEE-----------CCCCCEEEEEEcCC--CEEEEEeccccccccccccccccc-------------
Confidence            6899998876544443           38899999999985  489999999999999998876321             


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC-------------------------------------
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP-------------------------------------  122 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~-------------------------------------  122 (312)
                      ......+........+.+++.+++++ .|+.|++|++.+....                                     
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  168 (355)
T d1nexb2          89 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS  168 (355)
T ss_dssp             EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEE
T ss_pred             ccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccc
Confidence            11112334445566778888888776 5999999998764310                                     


Q ss_pred             ----------CCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccc
Q 021484          123 ----------SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV  192 (312)
Q Consensus       123 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  192 (312)
                                .+..+..+++.+.+....+.++...  +.++.| ++.++++++++.|+.|++||+++++.+..+.+|...
T Consensus       169 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~  245 (355)
T d1nexb2         169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR--IYSTIY-DHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL  245 (355)
T ss_dssp             EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEE-ETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             cccceeeeecccceeeeeecccccceeeeeccccc--cccccc-cccceeeecccccceEEeeecccccccccccccccc
Confidence                      0011222333344444455555544  788888 899999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484          193 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       193 v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      |.+++|++  ++|++++.||+|++||+++... .+..|...+......++++.+++++ .|+.+++||+++++.
T Consensus       246 v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~  315 (355)
T d1nexb2         246 VGLLRLSD--KFLVSAAADGSIRGWDANDYSR-KFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKL  315 (355)
T ss_dssp             CCEEEECS--SEEEEECTTSEEEEEETTTCCE-EEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCB
T ss_pred             cccccccc--ceeeeeecccccccccccccce-ecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCE
Confidence            99999864  6899999999999999987653 2233455555555556666666665 589999999887643

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.6e-28  Score=200.81  Aligned_cols=223  Identities=13%  Similarity=0.162  Sum_probs=164.0

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEe--CCCeEEEEEccCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~   78 (312)
                      |++||++..+....+......   .+..|..+|.+++|+|++ +.+++++  .++.+++|+..+++.             
T Consensus        89 i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~~~~~~~~-------------  151 (325)
T d1pgua1          89 VIVWGWTFDKESNSVEVNVKS---EFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSGNS-------------  151 (325)
T ss_dssp             EEEEEEEEEGGGTEEEEEEEE---EEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTCCE-------------
T ss_pred             EEEeeecCCcceeeeeccccc---ccccccCcEEEEEECCCC-CccceeeccccceEEEEeeccccc-------------
Confidence            589999876544333322111   112378899999999998 5666554  477899999988762             


Q ss_pred             cccccccCCCccEEEEEEccCCCe-EEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe---cccCCceeeEE
Q 021484           79 CPRHLIGKNNIHITGLAYSNTSEL-LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGV  153 (312)
Q Consensus        79 ~~~~~~~~~~~~i~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~v  153 (312)
                       ...+ .+|...|.+++|+|++.+ ++++ .|+.+++|+....                +....+.   .|.  ..|.++
T Consensus       152 -~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~----------------~~~~~~~~~~~~~--~~v~~v  211 (325)
T d1pgua1         152 -LGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF----------------KFSASDRTHHKQG--SFVRDV  211 (325)
T ss_dssp             -EEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB----------------EEEEEECSSSCTT--CCEEEE
T ss_pred             -ceee-eecccccccccccccccceEEEeeccccccccccccc----------------ccceecccccCCC--CccEEe
Confidence             2222 678999999999999874 5555 5999999998765                3333332   334  349999


Q ss_pred             EEecCC-CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEc---CCCCeEEEEeCCCcEEEccCCCCCC-CCCC
Q 021484          154 NFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH---PHIPMFATCGIEKTVKLWAPMPTDF-PPLP  228 (312)
Q Consensus       154 ~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~---p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~  228 (312)
                      +| +|+ +.+|++++.|+.|++||+++++.+..+.+|..++..+.|+   |++++|++++.|++|+|||+++++. ..+.
T Consensus       212 ~~-~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~  290 (325)
T d1pgua1         212 EF-SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT  290 (325)
T ss_dssp             EE-CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ee-ccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE
Confidence            99 885 6889999999999999999999999999998887766666   7889999999999999999998763 3232


Q ss_pred             CC--hhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          229 DN--AEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       229 ~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                      .+  ........+....+..+++++.|+.|++||+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         291 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            22  2222222222234558899999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=1.2e-28  Score=200.07  Aligned_cols=230  Identities=10%  Similarity=0.088  Sum_probs=161.9

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCC----CCCCcc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS----SDTPVD   76 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~   76 (312)
                      |++||+++.+....+.          .+|...|++++|+|++ . +++++.|+.+++|+...........    ....+.
T Consensus        36 v~vWd~~~~~~~~~~~----------~~h~~~v~~v~~~~~g-~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~  103 (299)
T d1nr0a2          36 INSWDISTGISNRVFP----------DVHATMITGIKTTSKG-D-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL  103 (299)
T ss_dssp             EEEEETTTCCEEECSS----------CSCSSCEEEEEECTTS-C-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE
T ss_pred             EEEEECCCCcEEEEEc----------CCCCCcEEEEEeeccc-e-eecccceeeEEEeccCCcccccccccccccccccc
Confidence            5799998766443321          1378899999999988 4 5566789999999986543221110    000000


Q ss_pred             cc--cc-------------------cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccC
Q 021484           77 TF--CP-------------------RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQK  134 (312)
Q Consensus        77 ~~--~~-------------------~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  134 (312)
                      ..  .+                   ..........+.+++|+|++++|+++ .|+.|++||+.++               
T Consensus       104 ~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~---------------  168 (299)
T d1nr0a2         104 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA---------------  168 (299)
T ss_dssp             EEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETT---------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---------------
Confidence            00  00                   00001123457788899998888886 5899999998765               


Q ss_pred             CCCCc-eEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE---EEeecCccceEEEEEcCCCCeEEEEeC
Q 021484          135 REEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV---RLMVGDRHVVNQLEPHPHIPMFATCGI  210 (312)
Q Consensus       135 ~~~~~-~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~v~~~~~~p~~~~l~t~~~  210 (312)
                       +... ....|...  |.+++| +|++++|++++.|+.|++||+.++...   ..+.+|...|++++|+|++++|++++.
T Consensus       169 -~~~~~~~~~~~~~--i~~~~~-~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~  244 (299)
T d1nr0a2         169 -SVSEVKTIVHPAE--ITSVAF-SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL  244 (299)
T ss_dssp             -EEEEEEEEECSSC--EEEEEE-CTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred             -ccccccccccccc--cccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcC
Confidence             3222 33456654  999999 999999999999999999999877654   345678899999999999999999999


Q ss_pred             CCcEEEccCCCCCCC---CCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484          211 EKTVKLWAPMPTDFP---PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       211 d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      |+.|++||+++....   ....+....+....+ +++.++++++.|+.|++||+.
T Consensus       245 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         245 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             CCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            999999999876532   222344444444433 456789999999999999973

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.2e-26  Score=193.16  Aligned_cols=219  Identities=12%  Similarity=0.151  Sum_probs=148.2

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCC----cEEEEEeCCCeEEEEEccCCeecC---CCCCCC
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP----NYFAVGGSDEYARVYDIRKCHWYS---PISSDT   73 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~----~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~   73 (312)
                      |++|++........+...... ......++..+..++|.++..    .++++++.||++++|++.......   ......
T Consensus        91 v~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  169 (393)
T d1sq9a_          91 LLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  169 (393)
T ss_dssp             EEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             EEEEEccCCCceeeeeccccc-eeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc
Confidence            467777654433222221111 011122566788888887542    688999999999999986432110   000000


Q ss_pred             CcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeE
Q 021484           74 PVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG  152 (312)
Q Consensus        74 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  152 (312)
                      .............+...+.+++|+|++ +|+++ .|+.|++||+.++.          .+...+....+.+|...  |.+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~----------~~~~~~~~~~l~~h~~~--V~~  236 (393)
T d1sq9a_         170 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR----------PLYNFESQHSMINNSNS--IRS  236 (393)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE----------EEEEEECCC---CCCCC--EEE
T ss_pred             ceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc----------cccccccccccccccce--EEE
Confidence            000001111223456678899999998 67776 59999999998761          01111223345567755  999


Q ss_pred             EEEecCCCCEEEEeccCc---eEEEEeccCCeeEEEee-------------cCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484          153 VNFFGPNDEYVMSGSDCG---HLFIWKKKGGKLVRLMV-------------GDRHVVNQLEPHPHIPMFATCGIEKTVKL  216 (312)
Q Consensus       153 v~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~p~~~~l~t~~~d~~i~i  216 (312)
                      ++| +|++++|++|+.|+   .|++||+.+++++..+.             +|...|++++|+|++++|++++.|++|+|
T Consensus       237 l~~-spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~v  315 (393)
T d1sq9a_         237 VKF-SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF  315 (393)
T ss_dssp             EEE-CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             ccc-ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEE
Confidence            999 99999999999886   59999999998877664             79999999999999999999999999999


Q ss_pred             ccCCCCC-CCCCCCChhhh
Q 021484          217 WAPMPTD-FPPLPDNAEKI  234 (312)
Q Consensus       217 wd~~~~~-~~~~~~~~~~~  234 (312)
                      ||+++++ +.++.+|...+
T Consensus       316 Wd~~~g~~~~~l~gH~~~v  334 (393)
T d1sq9a_         316 WDVKTKERITTLNMHCDDI  334 (393)
T ss_dssp             EETTTTEEEEEEECCGGGC
T ss_pred             EECCCCCEEEEECCcCCcc
Confidence            9999886 46677777766

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2e-27  Score=191.75  Aligned_cols=205  Identities=12%  Similarity=0.144  Sum_probs=140.0

Q ss_pred             CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      .||..+|++++|+|     |++|+.||+|++||+.++.                    ..|...|.++++++++.++..+
T Consensus        10 ~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~--------------------~~h~~~V~~~~~~~~~~~~s~s   64 (287)
T d1pgua2          10 SGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH--------------------QDHSNLIVSLDNSKAQEYSSIS   64 (287)
T ss_dssp             CCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE--------------------CCCCSCEEEEECCSTTCCEEEE
T ss_pred             CCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC--------------------CCCCCCEEEEEecCCCeEEEEe
Confidence            36999999999987     8999999999999988664                    3444455555554443332223


Q ss_pred             cCCcEEEEEcC----------------------------------CCcCC------------------------CCCcCC
Q 021484          107 NDELVYLFEKN----------------------------------MGLGP------------------------SPLSLS  128 (312)
Q Consensus       107 ~d~~i~iwd~~----------------------------------~~~~~------------------------~~~~~~  128 (312)
                      .|+++++|++.                                  ++...                        ....+.
T Consensus        65 ~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~  144 (287)
T d1pgua2          65 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ  144 (287)
T ss_dssp             TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred             eccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceee
Confidence            35555555433                                  22100                        000011


Q ss_pred             cccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE-eecCccceEEEEEcCCC----
Q 021484          129 PEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MVGDRHVVNQLEPHPHI----  202 (312)
Q Consensus       129 ~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~p~~----  202 (312)
                      .+++........+. .+.  ..+++++| +|++.+|++|+.||.|++||+.+++.... +..|..+|.+++|+|.+    
T Consensus       145 ~~~~~~~~~~~~~~~~~~--~~v~~~~~-s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  221 (287)
T d1pgua2         145 VFKLSDLEVSFDLKTPLR--AKPSYISI-SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN  221 (287)
T ss_dssp             EEETTEEEEEEECSSCCS--SCEEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred             eeeccccceeeeeeeccC--CceeEEEe-ccCccccccccccccccceeecccccccccccccccccceeeecccccccc
Confidence            11111111111111 233  34999999 99999999999999999999998887653 57899999999998754    


Q ss_pred             ------CeEEEEeCCCcEEEccCCCC-C-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484          203 ------PMFATCGIEKTVKLWAPMPT-D-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  261 (312)
Q Consensus       203 ------~~l~t~~~d~~i~iwd~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~  261 (312)
                            .++++|+.|++|++||++.. + +..+.+|...+... .+.+++ .+++++.|+.+++|++
T Consensus       222 ~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v-~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL-LWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEE-EEEETT-EEEEEETTSCEEEEEE
T ss_pred             cccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEE-EECCCC-EEEEEECCCeEEEEEE
Confidence                  57999999999999998763 3 34455677777554 455554 6889999999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=6.8e-26  Score=186.29  Aligned_cols=157  Identities=17%  Similarity=0.292  Sum_probs=137.2

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N  107 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  107 (312)
                      +...+....+.+.+ .++++|+.|+.|++||++++++              ...+ .+|...|++++|+|++++|+++ .
T Consensus       183 ~~~~~~~~~~~~~~-~~~~~~~~d~~v~i~d~~~~~~--------------~~~~-~~h~~~i~~v~~~p~~~~l~s~s~  246 (340)
T d1tbga_         183 HTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMC--------------RQTF-TGHESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEE--------------EEEE-CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cceeEeeecccccc-ceeEEeecCceEEEEECCCCcE--------------EEEE-eCCCCCeEEEEECCCCCEEEEEeC
Confidence            56678899999988 7999999999999999998872              2222 6789999999999999999886 5


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  187 (312)
                      |+.|++|++...                .....+........+.+++| +|++++|++|+.||.|++||+.+++++..+.
T Consensus       247 d~~i~~~~~~~~----------------~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  309 (340)
T d1tbga_         247 DATCRLFDLRAD----------------QELMTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALKADRAGVLA  309 (340)
T ss_dssp             TSCEEEEETTTT----------------EEEEEECCTTCCSCEEEEEE-CSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             CCeEEEEeeccc----------------ccccccccccccCceEEEEE-CCCCCEEEEEECCCEEEEEECCCCcEEEEEc
Confidence            999999999876                44444443333344999999 9999999999999999999999999999999


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021484          188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWA  218 (312)
Q Consensus       188 ~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd  218 (312)
                      +|.++|++++|+|++++|++|+.||+|+|||
T Consensus       310 ~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6.4e-26  Score=187.20  Aligned_cols=232  Identities=15%  Similarity=0.208  Sum_probs=161.2

Q ss_pred             CCccce-EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           28 MNSIRL-NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        28 ~h~~~v-~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      ||...| +|++|+  + ++|++|+.||+|++||+.++++              ...+ .+|...|.+++|+|++ +|+++
T Consensus        10 GH~~~vitc~~~~--~-~~l~tgs~Dg~i~vWd~~~~~~--------------~~~l-~~H~~~V~~l~~s~~~-~l~s~   70 (355)
T d1nexb2          10 GHMTSVITCLQFE--D-NYVITGADDKMIRVYDSINKKF--------------LLQL-SGHDGGVWALKYAHGG-ILVSG   70 (355)
T ss_dssp             CCSSSCEEEEEEE--T-TEEEEEETTTEEEEEETTTTEE--------------EEEE-ECCSSCEEEEEEETTT-EEEEE
T ss_pred             CcCCCcEEEEEEC--C-CEEEEEeCCCeEEEEECCCCcE--------------EEEE-ECCCCCEEEEEEcCCC-EEEEE
Confidence            687775 666664  5 7999999999999999998873              2333 7899999999999865 56665


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE------------------------------
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF------------------------------  155 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~------------------------------  155 (312)
                       .|+.|++|+.....                ..................+                              
T Consensus        71 s~D~~i~iw~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~  134 (355)
T d1nexb2          71 STDRTVRVWDIKKGC----------------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH  134 (355)
T ss_dssp             ETTCCEEEEETTTTE----------------EEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-------
T ss_pred             ecccccccccccccc----------------cccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccc
Confidence             69999999997752                1111111111000111111                              


Q ss_pred             --------------------------------ecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCC
Q 021484          156 --------------------------------FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP  203 (312)
Q Consensus       156 --------------------------------~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~  203 (312)
                                                      ..+++++++++..|+.|++||+.+++.+....++...+.++.|+|++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (355)
T d1nexb2         135 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK  214 (355)
T ss_dssp             ----CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT
T ss_pred             cccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccce
Confidence                                            133455666666666777777766776667777778889999999999


Q ss_pred             eEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCccce---------eEee
Q 021484          204 MFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY---------RERR  273 (312)
Q Consensus       204 ~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~---------~~~~  273 (312)
                      .+++++.|++|++|+++++.. ..+.+|...+...   ..++.++++++.|+.|++||++.......         ....
T Consensus       215 ~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  291 (355)
T d1nexb2         215 RCISASMDTTIRIWDLENGELMYTLQGHTALVGLL---RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFY  291 (355)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEE---EECSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEE
T ss_pred             eeecccccceEEeeecccccccccccccccccccc---ccccceeeeeecccccccccccccceecccccCCceEEEEEc
Confidence            999999999999999998764 5555666655332   23467999999999999999876532211         1234


Q ss_pred             cCCCccCCCCCCCeEEEeecCCCCC
Q 021484          274 YNAADFESDEEEGETYLLGFSDSDA  298 (312)
Q Consensus       274 ~~~~~~~~~~~~~~v~~~~~~~~~~  298 (312)
                      ++...+.++ .++.|.+||+..+..
T Consensus       292 ~~~~~l~~g-~d~~i~vwd~~tg~~  315 (355)
T d1nexb2         292 VSDNILVSG-SENQFNIYNLRSGKL  315 (355)
T ss_dssp             ECSSEEEEE-ETTEEEEEETTTCCB
T ss_pred             CCCCEEEEE-eCCEEEEEECCCCCE
Confidence            444444444 467899999987753

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6e-25  Score=176.41  Aligned_cols=207  Identities=19%  Similarity=0.270  Sum_probs=150.5

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-  106 (312)
                      +|...|+|++|  ++ ++|++|+.||+|++||+.++++              ...+ .+|...|++++|  ++++|+++ 
T Consensus        13 ~~~~~V~c~~~--d~-~~l~sgs~Dg~i~vWd~~~~~~--------------~~~l-~~H~~~V~~v~~--~~~~l~s~s   72 (293)
T d1p22a2          13 ETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTLEC--------------KRIL-TGHTGSVLCLQY--DERVIITGS   72 (293)
T ss_dssp             SSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSSCCE--------------EEEE-CCCSSCEEEEEC--CSSEEEEEE
T ss_pred             CCCCCEEEEEE--cC-CEEEEEeCCCeEEEEECCCCcE--------------EEEE-ecCCCCEeeeec--ccceeeccc
Confidence            47889998776  56 7999999999999999998872              2333 789999999887  56788886 


Q ss_pred             cCCcEEEEEcCCCcCC------------------------CCCcCCcccccCCCC---CceEecccCCceeeEEEEecCC
Q 021484          107 NDELVYLFEKNMGLGP------------------------SPLSLSPEDLQKREE---PQVYSGHRNSQTVKGVNFFGPN  159 (312)
Q Consensus       107 ~d~~i~iwd~~~~~~~------------------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~v~~~s~~  159 (312)
                      .|+.|++|++..+...                        ....+..++......   ...+..|...  +..+.+   .
T Consensus        73 ~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~---~  147 (293)
T d1p22a2          73 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA--VNVVDF---D  147 (293)
T ss_dssp             TTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC--EEEEEE---E
T ss_pred             ccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccc--ccccee---c
Confidence            5999999999876410                        001111222222211   1122333333  655554   4


Q ss_pred             CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021484          160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN  238 (312)
Q Consensus       160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~  238 (312)
                      ...+++++.|+.|++||+++++++..+.++...+..+.++  +.++++++.|++|++||+++... .....+...+   .
T Consensus       148 ~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v---~  222 (293)
T d1p22a2         148 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV---R  222 (293)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCE---E
T ss_pred             ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceee---e
Confidence            5678899999999999999999999999998888887775  56899999999999999988764 3333333333   2


Q ss_pred             ccCCCCceeEEecCCceEEEEEeccc
Q 021484          239 KQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       239 ~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      ....+..++++++.|+.+++|++...
T Consensus       223 ~~~~~~~~l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         223 CIRFDNKRIVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             EEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             eccccceEEEEEcCCCEEEEEECCCC
Confidence            24556789999999999999997653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.5e-24  Score=182.82  Aligned_cols=165  Identities=19%  Similarity=0.192  Sum_probs=122.6

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN  107 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  107 (312)
                      .+...+++++|+|++  +|++|+.|++|++||+.+++..         ..+.....+.+|..+|.+++|+|+|++|++++
T Consensus       182 ~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~---------~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs  250 (393)
T d1sq9a_         182 TPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL---------YNFESQHSMINNSNSIRSVKFSPQGSLLAIAH  250 (393)
T ss_dssp             SSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE---------EEEECCC---CCCCCEEEEEECSSTTEEEEEE
T ss_pred             CCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccc---------cccccccccccccceEEEcccccccceeeeec
Confidence            356679999999986  8899999999999999988743         22233344478999999999999999999974


Q ss_pred             -CC---cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484          108 -DE---LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       108 -d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                       |+   .|++||+.++....  .+.. ..........+.+|...  |++++| +|++++|++|+.|++|++||+.+++++
T Consensus       251 ~D~t~~~i~lwd~~~g~~~~--~l~~-~~~~~~~~~~~~gH~~~--V~~l~f-spd~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         251 DSNSFGCITLYETEFGERIG--SLSV-PTHSSQASLGEFAHSSW--VMSLSF-NDSGETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             EETTEEEEEEEETTTCCEEE--EECB-C--------CCBSBSSC--EEEEEE-CSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCCcceeeecccccceeee--eecc-ccccccceeeeecccCc--eeeecc-CCCCCeeEEECCCCEEEEEECCCCCEE
Confidence             65   48999998762000  0000 00001222334578866  999999 999999999999999999999999999


Q ss_pred             EEeecCccceE----EEEEcCCCCeEEEEe
Q 021484          184 RLMVGDRHVVN----QLEPHPHIPMFATCG  209 (312)
Q Consensus       184 ~~~~~~~~~v~----~~~~~p~~~~l~t~~  209 (312)
                      .++++|...|.    .++|+|++..+++++
T Consensus       325 ~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         325 TTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             EEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             EEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            99999988775    477888887776554

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.1e-24  Score=171.44  Aligned_cols=218  Identities=13%  Similarity=0.283  Sum_probs=158.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcc----
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD----   76 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----   76 (312)
                      |+|||+.+.++...+.           +|..+|++++|+  + ++|++|+.|+.|++|++..+.............    
T Consensus        37 i~vWd~~~~~~~~~l~-----------~H~~~V~~v~~~--~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~  102 (293)
T d1p22a2          37 IKIWDKNTLECKRILT-----------GHTGSVLCLQYD--E-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR  102 (293)
T ss_dssp             EEEEESSSCCEEEEEC-----------CCSSCEEEEECC--S-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEE
T ss_pred             EEEEECCCCcEEEEEe-----------cCCCCEeeeecc--c-ceeeccccccccccccccccccccccccccccccccc
Confidence            6899998876555443           388999999885  3 699999999999999998765432211111000    


Q ss_pred             ----------------c--------ccccccccCCCccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCcCCCCCcCCccc
Q 021484           77 ----------------T--------FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPED  131 (312)
Q Consensus        77 ----------------~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~  131 (312)
                                      .        .........|...+..+.+.+  ..+++ +.|+.+++||+.++            
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~------------  168 (293)
T d1p22a2         103 FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTC------------  168 (293)
T ss_dssp             CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTC------------
T ss_pred             ccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCC------------
Confidence                            0        000111234666676666654  34555 46999999999887            


Q ss_pred             ccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC
Q 021484          132 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE  211 (312)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d  211 (312)
                          +.+..+.++...  +..+.+   ++.++++++.||.|++||+++.+.+..+.+|...+..  +++++.+|++++.|
T Consensus       169 ----~~~~~~~~~~~~--v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~d  237 (293)
T d1p22a2         169 ----EFVRTLNGHKRG--IACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYD  237 (293)
T ss_dssp             ----CEEEEEECCSSC--EEEEEE---ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETT
T ss_pred             ----cEEEEEcccccc--cccccC---CCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCC
Confidence                677788888765  777766   4678999999999999999999999999888888765  45678899999999


Q ss_pred             CcEEEccCCCCC----------CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          212 KTVKLWAPMPTD----------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       212 ~~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      |.|++||+....          +..+.+|...+....   .++.++++++.|+.|++||
T Consensus       238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~---~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ---FDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE---ECSSCEEECCSSSEEEEEC
T ss_pred             CEEEEEECCCCccccccCCceeeEEecCCCCCEEEEE---EcCCEEEEEecCCEEEEeC
Confidence            999999975422          123445666664433   2567899999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.3e-24  Score=174.35  Aligned_cols=239  Identities=8%  Similarity=-0.069  Sum_probs=165.1

Q ss_pred             CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe
Q 021484           28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY  106 (312)
Q Consensus        28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~  106 (312)
                      +|++.|++++|+|++ ++|++|+.||+|++||+.+....           ..... ..+|..+|.+++|+|++. +|+++
T Consensus         9 ~h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~~~~-----------~~~~~-~~~h~~~V~~v~f~~~~~~~l~sg   75 (342)
T d1yfqa_           9 APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKN-----------VDLLQ-SLRYKHPLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             CCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTE-----------EEEEE-EEECSSCEEEEEEEESSSEEEEEE
T ss_pred             CCCCCEEEEEEeCCC-CEEEEEECCCeEEEEEccCCCcc-----------eEEEE-ecCCCCCEEEEEEeCCCCCEEEEc
Confidence            489999999999998 89999999999999999865410           01111 136899999999999764 77776


Q ss_pred             -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee---
Q 021484          107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL---  182 (312)
Q Consensus       107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~---  182 (312)
                       .|+.|++|++...                ........+... ......+ .++...+++++.++.+++||++++..   
T Consensus        76 ~~d~~v~~w~~~~~----------------~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~wd~~~~~~~~~  137 (342)
T d1yfqa_          76 TVQGEILKVDLIGS----------------PSFQALTNNEAN-LGICRIC-KYGDDKLIAASWDGLIEVIDPRNYGDGVI  137 (342)
T ss_dssp             ETTSCEEEECSSSS----------------SSEEECBSCCCC-SCEEEEE-EETTTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred             ccccceeeeecccc----------------cccccccccccc-ccccccc-ccccccccccccccccceeecccccccee
Confidence             5999999999876                343333333332 1333334 67888999999999999999865432   


Q ss_pred             -EEEeecC--ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC----CCChhhhhhhhccCCCCceeEEecCCce
Q 021484          183 -VRLMVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL----PDNAEKIMKANKQGREDHSRITLTPDVI  255 (312)
Q Consensus       183 -~~~~~~~--~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~s~~~d~~  255 (312)
                       ......+  ......+.+.+.+..+++++.|+.|++|++........    ...............++..+++++.|+.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  217 (342)
T d1yfqa_         138 AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR  217 (342)
T ss_dssp             EEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred             eecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCe
Confidence             2222222  22345667788899999999999999999987653221    1111222222333445677888888998


Q ss_pred             EEEEEecccCcc-------------------------ceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484          256 MHVLRLQRRQTL-------------------------AYRERRYNAADFESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       256 i~i~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  297 (312)
                      +.+|++......                         .-..+.|+...++++..+|.|++||...+.
T Consensus       218 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~  284 (342)
T d1yfqa_         218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             EEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCc
Confidence            888876432111                         012567777888888888889999887654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=1.3e-23  Score=174.06  Aligned_cols=250  Identities=8%  Similarity=0.090  Sum_probs=178.9

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~   78 (312)
                      |++||+.....   .+.          +|..+|++++|+|++ +.|++++.+  ..|++||..++++.            
T Consensus        26 v~v~d~~~~~~---~~~----------~~~~~v~~~~~spDg-~~l~~~~~~~g~~v~v~d~~~~~~~------------   79 (360)
T d1k32a3          26 AFIQDVSGTYV---LKV----------PEPLRIRYVRRGGDT-KVAFIHGTREGDFLGIYDYRTGKAE------------   79 (360)
T ss_dssp             EEEECTTSSBE---EEC----------SCCSCEEEEEECSSS-EEEEEEEETTEEEEEEEETTTCCEE------------
T ss_pred             EEEEECCCCcE---EEc----------cCCCCEEEEEECCCC-CEEEEEEcCCCCEEEEEECCCCcEE------------
Confidence            46788765442   222          278899999999999 677665544  37999999987521            


Q ss_pred             cccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec
Q 021484           79 CPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  157 (312)
Q Consensus        79 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s  157 (312)
                         . +..|...+.+++|+|+|++|+++ .++.+++|++.++                +....+..+...  +.+++| +
T Consensus        80 ---~-~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~--~~~~~~-s  136 (360)
T d1k32a3          80 ---K-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG----------------KPTVIERSREAM--ITDFTI-S  136 (360)
T ss_dssp             ---E-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC----------------CEEEEEECSSSC--CCCEEE-C
T ss_pred             ---E-eeCCCceEEeeeecccccccceecccccccccccccc----------------ceeeeeeccccc--ccchhh-c
Confidence               1 26788999999999999998886 6999999999887                666777777755  899999 9


Q ss_pred             CCCCEEEEe----------ccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC--
Q 021484          158 PNDEYVMSG----------SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP--  225 (312)
Q Consensus       158 ~~~~~l~~~----------~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~--  225 (312)
                      |++++|+.+          ..++.+++|++.+++... +..|...+..++|+|+|+.|++++.++.+++|+.......  
T Consensus       137 pdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~  215 (360)
T d1k32a3         137 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE  215 (360)
T ss_dssp             TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECC
T ss_pred             cceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeec
Confidence            999999854          346679999999887654 4446678889999999999999999999999986432110  


Q ss_pred             ------------------CCC--------------CChhhhhhhh---------ccCCC-------------CceeEEec
Q 021484          226 ------------------PLP--------------DNAEKIMKAN---------KQGRE-------------DHSRITLT  251 (312)
Q Consensus       226 ------------------~~~--------------~~~~~~~~~~---------~~~~~-------------~~~l~s~~  251 (312)
                                        .+.              .....+....         ....+             ..++++++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (360)
T d1k32a3         216 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP  295 (360)
T ss_dssp             SCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC
T ss_pred             cccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecC
Confidence                              000              0000000000         00000             11233455


Q ss_pred             CCceEEEEEecccCccce------eEeecCCCccCCCCCCCeEEEeecCCCCCCC
Q 021484          252 PDVIMHVLRLQRRQTLAY------RERRYNAADFESDEEEGETYLLGFSDSDASS  300 (312)
Q Consensus       252 ~d~~i~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  300 (312)
                      .++.+++|++.......+      ..++|++..+....++|.|++++...++++.
T Consensus       296 ~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~  350 (360)
T d1k32a3         296 EKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER  350 (360)
T ss_dssp             CCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCE
T ss_pred             CCCEEEEEECCCCeEEEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcce
Confidence            678899999876543222      2788999999999999999999998877654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.2e-23  Score=168.62  Aligned_cols=223  Identities=15%  Similarity=0.216  Sum_probs=155.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCC-Cc----
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT-PV----   75 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~----   75 (312)
                      |+|||+.+.++...+.           +|..+|.+++|+|   .+|++|+.|+.+++|+.............. .+    
T Consensus        39 i~vWd~~~~~~~~~~~-----------~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (342)
T d2ovrb2          39 LKVWSAVTGKCLRTLV-----------GHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH  104 (342)
T ss_dssp             EEEEETTTCCEEEECC-----------CCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEEEECCCCCEEEEEe-----------CCCCCEEEEEeCC---CccccceecccccccccccccceecccccceeEeeee
Confidence            6899998876443332           4889999999987   489999999999999987654321111000 00    


Q ss_pred             -------------------------------------------------------ccc-----cccccccCCCccEEEEE
Q 021484           76 -------------------------------------------------------DTF-----CPRHLIGKNNIHITGLA   95 (312)
Q Consensus        76 -------------------------------------------------------~~~-----~~~~~~~~~~~~i~~~~   95 (312)
                                                                             ..+     .....+.+|...+.  .
T Consensus       105 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--~  182 (342)
T d2ovrb2         105 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--S  182 (342)
T ss_dssp             EETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE--E
T ss_pred             cccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccc--c
Confidence                                                                   000     00001123333333  3


Q ss_pred             EccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEE
Q 021484           96 YSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI  174 (312)
Q Consensus        96 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~i  174 (312)
                      +.+++.+++++ .|+.|++||++.+                +.+..+.+|...  +.++++   ++++|++++.|+.|++
T Consensus       183 ~~~~~~~l~s~~~dg~i~~~d~~~~----------------~~~~~~~~~~~~--v~~~~~---~~~~l~s~s~d~~i~i  241 (342)
T d2ovrb2         183 LQFDGIHVVSGSLDTSIRVWDVETG----------------NCIHTLTGHQSL--TSGMEL---KDNILVSGNADSTVKI  241 (342)
T ss_dssp             EEECSSEEEEEETTSCEEEEETTTC----------------CEEEEECCCCSC--EEEEEE---ETTEEEEEETTSCEEE
T ss_pred             ccCCCCEEEEEeCCCeEEEeecccc----------------eeeeEecccccc--eeEEec---CCCEEEEEcCCCEEEE
Confidence            44567777775 5889999998876                677888888865  888776   4579999999999999


Q ss_pred             EeccCCeeEEEeec---CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCC-----CChhhhhhhhccCCCCc
Q 021484          175 WKKKGGKLVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP-----DNAEKIMKANKQGREDH  245 (312)
Q Consensus       175 wd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~  245 (312)
                      ||+...+....+..   |...+.++.+  +++++++++.||+|++||+++++. ..+.     +|... +....+++++.
T Consensus       242 wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~-v~~v~~s~~~~  318 (342)
T d2ovrb2         242 WDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV-VWRIRASNTKL  318 (342)
T ss_dssp             EETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCE-EEEEEECSSEE
T ss_pred             Eecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCC-EEEEEECCCCC
Confidence            99999888877765   4456666666  557999999999999999998763 2221     22233 44555788888


Q ss_pred             eeEEecCCce----EEEEEecc
Q 021484          246 SRITLTPDVI----MHVLRLQR  263 (312)
Q Consensus       246 ~l~s~~~d~~----i~i~~~~~  263 (312)
                      ++++++.||+    +++||++.
T Consensus       319 ~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         319 VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEEeCCCCCeeEEEEEeCCC
Confidence            9999998875    89999763

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1e-23  Score=172.59  Aligned_cols=236  Identities=12%  Similarity=-0.008  Sum_probs=139.3

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+|||++.......+... .       +|..+|++++|+|+++.+|++|+.||.|++|++.....              .
T Consensus        35 v~iwd~~~~~~~~~~~~~-~-------~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~--------------~   92 (342)
T d1yfqa_          35 LTVYKFDIQAKNVDLLQS-L-------RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS--------------F   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEE-E-------ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS--------------E
T ss_pred             EEEEEccCCCcceEEEEe-c-------CCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccc--------------c
Confidence            689999876543333221 1       27889999999998768999999999999999987652              2


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCC---------CcCCc--ccccC----------CCCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSP---------LSLSP--EDLQK----------REEP  138 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~---------~~~~~--~~~~~----------~~~~  138 (312)
                      ......+........+.++...++++ .++.+++||++.......         .....  ..+..          ...+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  172 (342)
T d1yfqa_          93 QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQV  172 (342)
T ss_dssp             EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcE
Confidence            22213333444555666677777775 699999999865420000         00000  00000          0000


Q ss_pred             ceEecccCC------------ceeeEEEEecCCCCEEEEeccCceEEEEeccCCee---------EE------EeecCcc
Q 021484          139 QVYSGHRNS------------QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL---------VR------LMVGDRH  191 (312)
Q Consensus       139 ~~~~~~~~~------------~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~---------~~------~~~~~~~  191 (312)
                      +.+......            ..+.+..+++.++..+++++.||.+.+|+......         ..      ....|..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (342)
T d1yfqa_         173 QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY  252 (342)
T ss_dssp             EEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC
T ss_pred             EEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccc
Confidence            011000000            00122222233445566666666666665432211         00      0123455


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484          192 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  260 (312)
Q Consensus       192 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~  260 (312)
                      .|++++|+|++++|++|+.||+|++||+++++. ..+..+...  ....+++++.++++++.|..+++|.
T Consensus       253 ~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~--~~~~~s~~~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED--SVVKIACSDNILCLATSDDTFKTNA  320 (342)
T ss_dssp             CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS--EEEEEEECSSEEEEEEECTHHHHCS
T ss_pred             cceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCC--EEEEEEeCCCEEEEEEcCCcEEEee
Confidence            789999999999999999999999999998763 444322221  2234567788888888888777774

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.9e-22  Score=160.36  Aligned_cols=149  Identities=16%  Similarity=0.265  Sum_probs=117.8

Q ss_pred             EEEcCCCCcEEEEEeCC-CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEE
Q 021484           36 IVIDPRNPNYFAVGGSD-EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYL  113 (312)
Q Consensus        36 ~~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~i  113 (312)
                      .+++|++ ..+++++.+ +.+++|++...+              ........|...+++++|+|++.+|+++ .|+.|++
T Consensus       124 ~~~~~~~-~~~~v~~~~~~~v~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i  188 (287)
T d1pgua2         124 SAVSLSQ-NYVAVGLEEGNTIQVFKLSDLE--------------VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL  188 (287)
T ss_dssp             EEEEECS-SEEEEEETTTSCEEEEETTEEE--------------EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eeeeccC-cceeeeccccceeeeeeccccc--------------eeeeeeeccCCceeEEEeccCccccccccccccccc
Confidence            4556666 566666665 579999987655              2222335577889999999999999887 5999999


Q ss_pred             EEcCCCcCCCCCcCCcccccCCCC-CceEecccCCceeeEEEEecCC----------CCEEEEeccCceEEEEeccC-Ce
Q 021484          114 FEKNMGLGPSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGPN----------DEYVMSGSDCGHLFIWKKKG-GK  181 (312)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~~~s~~----------~~~l~~~~~dg~v~iwd~~~-~~  181 (312)
                      ||+.++                .. ...+.+|...  |.+++| +|.          +.+|++|+.|+.|++||+++ ++
T Consensus       189 ~d~~~~----------------~~~~~~~~~h~~~--v~~~~~-~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~  249 (287)
T d1pgua2         189 YDLQSR----------------EVKTSRWAFRTSK--INAISW-KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK  249 (287)
T ss_dssp             EETTTT----------------EEEECCSCCCSSC--EEEEEE-CCCC------CCSCCEEEEEETTSCEEEEESSCTTC
T ss_pred             eeeccc----------------ccccccccccccc--cceeee-cccccccccccCCCCeeEeecCCCeEEEEECCCCCe
Confidence            999876                22 2335567755  999998 654          56899999999999999876 56


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484          182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  219 (312)
Q Consensus       182 ~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  219 (312)
                      .+..+.+|...|++++|+|++ .|++++.|++|++|++
T Consensus       250 ~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         250 IIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            677788999999999999986 6889999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=7.9e-22  Score=163.19  Aligned_cols=189  Identities=8%  Similarity=0.060  Sum_probs=152.2

Q ss_pred             EEEEEcC-CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC--C
Q 021484           34 NAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND--E  109 (312)
Q Consensus        34 ~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d--~  109 (312)
                      .+-.||| +| +++|+++ +|.|++||+.++.+.               .  ..|...|.+++|+|+|+.|+++ .+  .
T Consensus         6 ~~~~fSP~dG-~~~a~~~-~g~v~v~d~~~~~~~---------------~--~~~~~~v~~~~~spDg~~l~~~~~~~g~   66 (360)
T d1k32a3           6 FAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVL---------------K--VPEPLRIRYVRRGGDTKVAFIHGTREGD   66 (360)
T ss_dssp             GEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEE---------------E--CSCCSCEEEEEECSSSEEEEEEEETTEE
T ss_pred             hcccccCCCC-CEEEEEE-CCeEEEEECCCCcEE---------------E--ccCCCCEEEEEECCCCCEEEEEEcCCCC
Confidence            3567999 77 7888876 589999999877621               1  3578899999999999977764 43  3


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  189 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  189 (312)
                      .|++||..++                 ..+.+..|...  +.+++| +|++++|++++.++.+++|++.+++....+..|
T Consensus        67 ~v~v~d~~~~-----------------~~~~~~~~~~~--v~~~~~-spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (360)
T d1k32a3          67 FLGIYDYRTG-----------------KAEKFEENLGN--VFAMGV-DRNGKFAVVANDRFEIMTVDLETGKPTVIERSR  126 (360)
T ss_dssp             EEEEEETTTC-----------------CEEECCCCCCS--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEEEECCCC-----------------cEEEeeCCCce--EEeeee-cccccccceeccccccccccccccceeeeeecc
Confidence            7999999886                 44566677765  999999 999999999999999999999999999899889


Q ss_pred             ccceEEEEEcCCCCeEEEEe----------CCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEE
Q 021484          190 RHVVNQLEPHPHIPMFATCG----------IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL  259 (312)
Q Consensus       190 ~~~v~~~~~~p~~~~l~t~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~  259 (312)
                      ...+.+++|+|+|++|+.++          .++.+++|++.+++...+..+.... ....+++++..+++++.++.+++|
T Consensus       127 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~spdg~~l~~~s~~~~~~~~  205 (360)
T d1k32a3         127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD-YAPAFDADSKNLYYLSYRSLDPSP  205 (360)
T ss_dssp             SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBE-EEEEECTTSCEEEEEESCCCCCEE
T ss_pred             cccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeeccccccc-ccccccCCCCEEEEEeCCCceEcc
Confidence            99999999999999988654          3456999999988754444344333 233478899999999999999999


Q ss_pred             Eec
Q 021484          260 RLQ  262 (312)
Q Consensus       260 ~~~  262 (312)
                      +..
T Consensus       206 d~~  208 (360)
T d1k32a3         206 DRV  208 (360)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=3.6e-20  Score=157.34  Aligned_cols=238  Identities=10%  Similarity=0.087  Sum_probs=151.5

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |+|||+.+.+....+..           | ..+..++|+|+| +++++++.|++|++||+.+++....         ...
T Consensus        44 v~vwD~~t~~~~~~l~~-----------g-~~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~~~~---------~~i  101 (426)
T d1hzua2          44 IALVDGDSKKIVKVIDT-----------G-YAVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKV---------AEI  101 (426)
T ss_dssp             EEEEETTTCSEEEEEEC-----------C-SSEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEE---------EEE
T ss_pred             EEEEECCCCcEEEEEeC-----------C-CCeeEEEECCCC-CEEEEEeCCCCEEEEEccCCceeEE---------EEE
Confidence            58999998876555543           2 358899999999 7999999999999999998862110         011


Q ss_pred             cccccCCCccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCcCC----------CCCcCCccc-----------------
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGP----------SPLSLSPED-----------------  131 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~----------~~~~~~~~~-----------------  131 (312)
                       ....+|...+.+++|+|+|+++++ + .++.+.+||..++...          ....+....                 
T Consensus       102 -~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~  180 (426)
T d1hzua2         102 -KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  180 (426)
T ss_dssp             -ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             -eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEe
Confidence             111345666778888999997655 4 5999999998875300          000000000                 


Q ss_pred             -----------ccCCCC-CceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEEeccCCe-----------------
Q 021484          132 -----------LQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGK-----------------  181 (312)
Q Consensus       132 -----------~~~~~~-~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~~~~-----------------  181 (312)
                                 ...... ......+..  .+..+.| +|++++++++. .+..+.+++..+++                 
T Consensus       181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (426)
T d1hzua2         181 VKETGKVLLVNYKDIDNLTVTSIGAAP--FLADGGW-DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA  257 (426)
T ss_dssp             ETTTTEEEEEECSSSSSCEEEEEECCS--SEEEEEE-CTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCE
T ss_pred             cCCCCeEEEEEeccccceeeEEeccCC--ccEeeeE-CCCCcEEEeeeecccceeeeecccccEEEEeccCCccccccee
Confidence                       000000 011112222  2678888 88888776654 34455555544333                 


Q ss_pred             -------------------------------------eEEEeecCccceEEEEEcCCCCeEEE-------EeCCCcEEEc
Q 021484          182 -------------------------------------LVRLMVGDRHVVNQLEPHPHIPMFAT-------CGIEKTVKLW  217 (312)
Q Consensus       182 -------------------------------------~~~~~~~~~~~v~~~~~~p~~~~l~t-------~~~d~~i~iw  217 (312)
                                                           ....+.+|...+..++|+|++++|++       ++.|++|+||
T Consensus       258 ~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vw  337 (426)
T d1hzua2         258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF  337 (426)
T ss_dssp             EEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEE
T ss_pred             eeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEE
Confidence                                                 33456677888899999999999984       4568899999


Q ss_pred             cCCCCCC-CCC---------CCChhhhhhhhccCCCCcee-EEe----cCCceEEEEEecccC
Q 021484          218 APMPTDF-PPL---------PDNAEKIMKANKQGREDHSR-ITL----TPDVIMHVLRLQRRQ  265 (312)
Q Consensus       218 d~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~l-~s~----~~d~~i~i~~~~~~~  265 (312)
                      |+.+++. .++         ..+...++. ..++++++++ +++    +.++.|++||.++..
T Consensus       338 d~~t~~~~~~~~~~~~~~~~~~~~~rv~~-~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         338 DLKNLDAKYQVLPIAEWADLGEGAKRVVQ-PEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             ETTCTTSCCEEECHHHHHCCCSSCCCEEE-EEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred             ECCCCCcCeEEeccchhcccCCCCccEEE-EEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence            9988764 222         122233332 2478888755 443    457889999977664

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=4.1e-19  Score=150.89  Aligned_cols=269  Identities=12%  Similarity=0.061  Sum_probs=156.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |.|||..+.+....+...            ..+..++|+|+| +++++++.|+++++||+.+++...       +.  ..
T Consensus        44 v~v~D~~t~~v~~~~~~g------------~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~-------~~--~i  101 (432)
T d1qksa2          44 IALIDGSTYEIKTVLDTG------------YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTT-------VA--EI  101 (432)
T ss_dssp             EEEEETTTCCEEEEEECS------------SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCE-------EE--EE
T ss_pred             EEEEECCCCcEEEEEeCC------------CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceE-------EE--EE
Confidence            578999988876666542            258999999999 899999999999999998775210       00  01


Q ss_pred             cccccCCCccEEEEEEccCCCeE-EEe-cCCcEEEEEcCCCcCC----------CCC-----------------------
Q 021484           81 RHLIGKNNIHITGLAYSNTSELL-ISY-NDELVYLFEKNMGLGP----------SPL-----------------------  125 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~----------~~~-----------------------  125 (312)
                      . ....|...+.+.+|+|||++| +++ .++.|++||..++...          ...                       
T Consensus       102 ~-~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs  180 (432)
T d1qksa2         102 K-IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  180 (432)
T ss_dssp             E-CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             e-cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEE
Confidence            1 113455566677788999965 555 4999999998875400          000                       


Q ss_pred             -----cCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEeccCCeeEEEeec-----CccceE
Q 021484          126 -----SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVG-----DRHVVN  194 (312)
Q Consensus       126 -----~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~-----~~~~v~  194 (312)
                           .+..++....+..+....+.. ..+..++| +|+++++++++. ++.+.++|..+++.+..+..     |.....
T Consensus       181 ~~~~~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~-spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~  258 (432)
T d1qksa2         181 VKETGKILLVDYTDLNNLKTTEISAE-RFLHDGGL-DGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA  258 (432)
T ss_dssp             ETTTTEEEEEETTCSSEEEEEEEECC-SSEEEEEE-CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE
T ss_pred             EccCCeEEEEEccCCCcceEEEEccc-CccccceE-CCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCccc
Confidence                 000011111121121121111 23678898 999998776654 56888999888777655432     222222


Q ss_pred             EEEEcCCCCeEEEEe-CCCcEEEccCCCCCCC---------------------------------CCCCChhhhhhhhcc
Q 021484          195 QLEPHPHIPMFATCG-IEKTVKLWAPMPTDFP---------------------------------PLPDNAEKIMKANKQ  240 (312)
Q Consensus       195 ~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~---------------------------------~~~~~~~~~~~~~~~  240 (312)
                      ...+...+...++.. .++.|.+|+.......                                 .+..+. .+..... 
T Consensus       259 ~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~-~~~~sv~-  336 (432)
T d1qksa2         259 NFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA-EISGSVA-  336 (432)
T ss_dssp             EEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH-HHHTCEE-
T ss_pred             ceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCC-CeeeEEE-
Confidence            333333333333322 2445555543221100                                 000111 1111221 


Q ss_pred             CCCCceeEEecCCceEEEEEeccc------C-ccceeEeecCCCcc-----CCCCCCCeEEEeecCCC
Q 021484          241 GREDHSRITLTPDVIMHVLRLQRR------Q-TLAYRERRYNAADF-----ESDEEEGETYLLGFSDS  296 (312)
Q Consensus       241 ~~~~~~l~s~~~d~~i~i~~~~~~------~-~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~  296 (312)
                      .+++..+++++.|+.+++|++.+.      . .....++++++..+     ...+++++|.++|....
T Consensus       337 vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~  404 (432)
T d1qksa2         337 VFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL  404 (432)
T ss_dssp             EEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             EEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCc
Confidence            257788899999999999987532      1 22334788888766     34467788888886554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.81  E-value=8.6e-18  Score=135.13  Aligned_cols=247  Identities=6%  Similarity=0.021  Sum_probs=169.2

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |.+||+.+.+....+..            ...+..++|+|++..++++++.++.|++||+.+++.+              
T Consensus        14 v~v~D~~t~~~~~~i~~------------g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~--------------   67 (301)
T d1l0qa2          14 ISVIDVTSNKVTATIPV------------GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--------------   67 (301)
T ss_dssp             EEEEETTTTEEEEEEEC------------SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--------------
T ss_pred             EEEEECCCCeEEEEEEC------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcee--------------
Confidence            57999988765444433            2346889999999445567788999999999988732              


Q ss_pred             cccccCCCccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                      ..+ ..+ ..+..++|++++..++. + .++.+.+|+..++                +....+..+. .  ..+++| +|
T Consensus        68 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~-~--~~~~~~-~~  125 (301)
T d1l0qa2          68 ATV-PAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN----------------TVAGTVKTGK-S--PLGLAL-SP  125 (301)
T ss_dssp             EEE-ECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----------------EEEEEEECSS-S--EEEEEE-CT
T ss_pred             eee-ecc-ccccccccccccccccccccccceeeecccccc----------------eeeeeccccc-c--ceEEEe-ec
Confidence            222 223 34688999999985554 4 4889999999876                5556555443 2  678888 89


Q ss_pred             CCCEEE-EeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC-CcEEEccCCCCCCCCCCCChhhhhh
Q 021484          159 NDEYVM-SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-KTVKLWAPMPTDFPPLPDNAEKIMK  236 (312)
Q Consensus       159 ~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~  236 (312)
                      +++.++ ++..++.+.+|+..+.+.+..+..+ ..+..+.++|++..+++++.+ +.+.+|+..................
T Consensus       126 dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (301)
T d1l0qa2         126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSG  204 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEE
T ss_pred             CCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeecccccCCcce
Confidence            988764 5667889999999999988887754 457889999999997777755 6677787766553221111122212


Q ss_pred             hhccCCCCceeEEe---cCCceEEEEEecccCcc---------ceeEeecCCCcc-CCCCCCCeEEEeecCCCC
Q 021484          237 ANKQGREDHSRITL---TPDVIMHVLRLQRRQTL---------AYRERRYNAADF-ESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       237 ~~~~~~~~~~l~s~---~~d~~i~i~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~  297 (312)
                       ..+.+++..++..   ..++.+++||+.+....         ....++|++..+ .+...++.|.++|.+.+.
T Consensus       205 -~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         205 -IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             -EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             -eeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence             2345555555433   34478999997654322         223667777765 456667788899887664

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=3.4e-18  Score=139.62  Aligned_cols=223  Identities=9%  Similarity=0.014  Sum_probs=150.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+....         +...+.+++|+|+|..++++++.++.|.+||+.++++.........      
T Consensus        13 v~v~D~~s~~~~~~i~~~~---------~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~------   77 (337)
T d1pbyb_          13 LVVIDTEKMAVDKVITIAD---------AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP------   77 (337)
T ss_dssp             EEEEETTTTEEEEEEECTT---------CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT------
T ss_pred             EEEEECCCCeEEEEEECCC---------CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC------
Confidence            5799999887665555432         3345788999999944456778899999999999875422111100      


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEec-------------CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISYN-------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS  147 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (312)
                          ..+...+..++|+|+++.++.+.             +..+.+||..++                +....+.... .
T Consensus        78 ----~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------------~~~~~~~~~~-~  136 (337)
T d1pbyb_          78 ----EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL----------------SRRKAFEAPR-Q  136 (337)
T ss_dssp             ----TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----------------EEEEEEECCS-S
T ss_pred             ----cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC----------------eEEEeccccC-C
Confidence                11223345789999999776542             456888888776                5555555432 2


Q ss_pred             ceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe-----------------------------------------
Q 021484          148 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-----------------------------------------  186 (312)
Q Consensus       148 ~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-----------------------------------------  186 (312)
                        +..++| +++++++++++.+  +.+||..+++....+                                         
T Consensus       137 --~~~~~~-s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (337)
T d1pbyb_         137 --ITMLAW-ARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP  211 (337)
T ss_dssp             --CCCEEE-CTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred             --ceEEEE-cCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccce
Confidence              778898 9999999988754  567777665443321                                         


Q ss_pred             -------------------------ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccC
Q 021484          187 -------------------------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQG  241 (312)
Q Consensus       187 -------------------------~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  241 (312)
                                               ..+...+..+.++|++.+++.+  ++.|++||+.+++......+...+ ....++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~s  288 (337)
T d1pbyb_         212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSY-YSVNVS  288 (337)
T ss_dssp             TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCC-CEEEEC
T ss_pred             eeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCE-EEEEEC
Confidence                                     1223344556777887777665  589999999988742221223333 345578


Q ss_pred             CCCceeEEecCCceEEEEEecccCcc
Q 021484          242 REDHSRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       242 ~~~~~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      +++.++++++.++.|++||..+.+..
T Consensus       289 ~dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         289 TDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            89999999999999999998876444

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.75  E-value=3e-17  Score=139.09  Aligned_cols=111  Identities=13%  Similarity=0.035  Sum_probs=79.4

Q ss_pred             EcCCCC-cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEE
Q 021484           38 IDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFE  115 (312)
Q Consensus        38 ~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd  115 (312)
                      ++++.. .++++.+.||+|++||+.++++              ...+ ..| ..+..++|+|||++|+++ .|+.|++||
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~--------------~~~l-~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd   89 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKI--------------VKVI-DTG-YAVHISRMSASGRYLLVIGRDARIDMID   89 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSE--------------EEEE-ECC-SSEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcE--------------EEEE-eCC-CCeeEEEECCCCCEEEEEeCCCCEEEEE
Confidence            444432 3457788899999999999873              2222 333 458999999999988886 599999999


Q ss_pred             cCCCcCCCCCcCCcccccCCCCCceE--e---cccCCceeeEEEEecCCCCEEEEe-ccCceEEEEeccCCeeE
Q 021484          116 KNMGLGPSPLSLSPEDLQKREEPQVY--S---GHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~v~~v~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~  183 (312)
                      +.++                +.....  .   +|..  .+.+++| +|+|++++++ ..++.+.+||..+++++
T Consensus        90 ~~t~----------------~~~~~~~i~~~~~~~~--~~~s~~~-spDG~~l~v~~~~~~~v~i~d~~~~~~~  144 (426)
T d1hzua2          90 LWAK----------------EPTKVAEIKIGIEARS--VESSKFK-GYEDRYTIAGAYWPPQFAIMDGETLEPK  144 (426)
T ss_dssp             TTSS----------------SCEEEEEEECCSEEEE--EEECCST-TCTTTEEEEEEEESSEEEEEETTTCCEE
T ss_pred             ccCC----------------ceeEEEEEeCCCCCcc--eEEeeee-cCCCCEEEEeecCCCeEEEEcCCcccee
Confidence            9887                333222  2   3332  2667777 8999987554 57899999998776543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.74  E-value=3.6e-17  Score=133.91  Aligned_cols=245  Identities=9%  Similarity=0.004  Sum_probs=141.8

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |.+||+.+.+....+...          |...+.+++|+|++..+++++..++.|++||+.+++.......         
T Consensus        20 v~v~D~~t~~~~~t~~~~----------~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~---------   80 (346)
T d1jmxb_          20 LHVVDVASDTVYKSCVMP----------DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL---------   80 (346)
T ss_dssp             EEEEETTTTEEEEEEECS----------SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES---------
T ss_pred             EEEEECCCCCEEEEEEcC----------CCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc---------
Confidence            579999987655544442          3446789999999954557777899999999999875422111         


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe-------------cCCcEEEEEcCCCcCCCCC-------cCCcccccCCC----
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY-------------NDELVYLFEKNMGLGPSPL-------SLSPEDLQKRE----  136 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-------------~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~----  136 (312)
                      ......+...+..++|+|+|++++.+             .+..+.+|+..++......       ...........    
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            11101222345678999999866553             2567889988765311000       00000000000    


Q ss_pred             ---CCceEeccc--------CCceeeEEEEecCCCCEE--------------------------EEeccCceEEEEeccC
Q 021484          137 ---EPQVYSGHR--------NSQTVKGVNFFGPNDEYV--------------------------MSGSDCGHLFIWKKKG  179 (312)
Q Consensus       137 ---~~~~~~~~~--------~~~~v~~v~~~s~~~~~l--------------------------~~~~~dg~v~iwd~~~  179 (312)
                         ....+....        .......+.+ +|++..+                          +++..++.+.+|+..+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (346)
T d1jmxb_         161 AGPDIYKMDVKTGKYTVALPLRNWNRKGYS-APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT  239 (346)
T ss_dssp             ESSSEEEECTTTCCEEEEECSTTCCCTTBC-CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT
T ss_pred             eCCcceEEEccCCCEEEEEecCCCccceEE-eccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCC
Confidence               000000000        0000111222 3333222                          1222344566666666


Q ss_pred             CeeEEE-eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021484          180 GKLVRL-MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  258 (312)
Q Consensus       180 ~~~~~~-~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  258 (312)
                      +..... +..|...+..+.++|++..++... ++.|++||+.+++..........+ ....+++++.++++++.|+.|++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~-~~va~s~DG~~l~v~~~d~~v~v  317 (346)
T d1jmxb_         240 GKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTY-YCVAFDKKGDKLYLGGTFNDLAV  317 (346)
T ss_dssp             CCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCC-CEEEECSSSSCEEEESBSSEEEE
T ss_pred             CceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCE-EEEEEcCCCCEEEEEeCCCcEEE
Confidence            554433 345667788888999988887766 468999999887642221122233 34557899999999999999999


Q ss_pred             EEecccCcc
Q 021484          259 LRLQRRQTL  267 (312)
Q Consensus       259 ~~~~~~~~~  267 (312)
                      ||..+.+..
T Consensus       318 ~D~~t~~~i  326 (346)
T d1jmxb_         318 FNPDTLEKV  326 (346)
T ss_dssp             EETTTTEEE
T ss_pred             EECccCCEE
Confidence            998776443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.72  E-value=7.4e-16  Score=123.59  Aligned_cols=215  Identities=12%  Similarity=0.077  Sum_probs=153.4

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.+....+..            ...+..++|++++..+++++..++.+.+|+..+++..              
T Consensus        56 i~v~d~~t~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  109 (301)
T d1l0qa2          56 VSIIDTATNNVIATVPA------------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA--------------  109 (301)
T ss_dssp             EEEEETTTTEEEEEEEC------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--------------
T ss_pred             EEEEECCCCceeeeeec------------cccccccccccccccccccccccceeeecccccceee--------------
Confidence            57899887765444332            1246889999999667777788899999999987632              


Q ss_pred             cccccCCCccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~  158 (312)
                      ..+  .+...+..++|+|++..++. + .++.+.+|+..+.                .....+..+. .  +..+.+ ++
T Consensus       110 ~~~--~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~-~--~~~~~~-~~  167 (301)
T d1l0qa2         110 GTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----------------AVINTVSVGR-S--PKGIAV-TP  167 (301)
T ss_dssp             EEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----------------EEEEEEECCS-S--EEEEEE-CT
T ss_pred             eec--cccccceEEEeecCCCeeeeeeccccceeeeecccc----------------ceeeecccCC-C--ceEEEe-ec
Confidence            111  23456788999999986654 4 4888999999876                4555555443 2  678888 88


Q ss_pred             CCCEEEEecc-CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEccCCCCCC-CCCCCChhh
Q 021484          159 NDEYVMSGSD-CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTDF-PPLPDNAEK  233 (312)
Q Consensus       159 ~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~~~-~~~~~~~~~  233 (312)
                      ++..+++++. .+.+.+|+....+....+..+ ..+..++|++++..++.++   .+++|++||+.++++ ..+.. ...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~  245 (301)
T d1l0qa2         168 DGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPD  245 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSS
T ss_pred             cccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC-CCC
Confidence            8888776665 567778888877777666644 4567899999999866554   346899999998764 22221 222


Q ss_pred             hhhhhccCCCCcee-EEecCCceEEEEEecccCc
Q 021484          234 IMKANKQGREDHSR-ITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       234 ~~~~~~~~~~~~~l-~s~~~d~~i~i~~~~~~~~  266 (312)
                      + ....++++++++ ++++.++.|++||+.+...
T Consensus       246 ~-~~va~spdg~~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         246 P-AGIAVTPDGKKVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             E-EEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             E-EEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            2 344578888765 6888999999999877643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=5.8e-17  Score=137.47  Aligned_cols=190  Identities=13%  Similarity=0.015  Sum_probs=133.3

Q ss_pred             cCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcC
Q 021484           39 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKN  117 (312)
Q Consensus        39 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~  117 (312)
                      ++.+ .++++.+.+|+|.+||..++++              ...+ ..+ ..+..++|+|||++++++ .|+.+++||+.
T Consensus        29 ~~~~-~~~v~~~d~g~v~v~D~~t~~v--------------~~~~-~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~   91 (432)
T d1qksa2          29 DLEN-LFSVTLRDAGQIALIDGSTYEI--------------KTVL-DTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLW   91 (432)
T ss_dssp             CGGG-EEEEEETTTTEEEEEETTTCCE--------------EEEE-ECS-SCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             CCCc-EEEEEEcCCCEEEEEECCCCcE--------------EEEE-eCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEee
Confidence            4433 4468889999999999999983              3333 333 358999999999998886 59999999998


Q ss_pred             CCcCCCCCcCCcccccCCCCCc--eEe---cccCCceeeEEEEecCCCCEE-EEeccCceEEEEeccCCeeEEEeecCc-
Q 021484          118 MGLGPSPLSLSPEDLQKREEPQ--VYS---GHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLMVGDR-  190 (312)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~v~~v~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~-  190 (312)
                      ++                +...  .+.   ++.  ..+.+.+| +|+|++| +++..++.|++||..+++++..+..|. 
T Consensus        92 t~----------------~~~~~~~i~~~~~~~--~~~~s~~~-SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~  152 (432)
T d1qksa2          92 MK----------------EPTTVAEIKIGSEAR--SIETSKME-GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM  152 (432)
T ss_dssp             SS----------------SCCEEEEEECCSEEE--EEEECCST-TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE
T ss_pred             CC----------------CceEEEEEecCCCCC--CeEEeccc-CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCc
Confidence            76                3222  222   232  22566666 8899986 678889999999999999988776542 


Q ss_pred             ----------cceEEEEEcCCCCeE-EEEeCCCcEEEccCCCCCCCCC-CCChhhhhhhhccCCCCceeEEecC-CceEE
Q 021484          191 ----------HVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPPL-PDNAEKIMKANKQGREDHSRITLTP-DVIMH  257 (312)
Q Consensus       191 ----------~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~  257 (312)
                                .....+.++|++..+ ++...++.|.+|+....+...+ ............++++++++++++. +..+.
T Consensus       153 ~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~  232 (432)
T d1qksa2         153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLV  232 (432)
T ss_dssp             CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred             cccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEE
Confidence                      345678899999874 5666789999999877542111 1112223344567888887666555 45777


Q ss_pred             EEEeccc
Q 021484          258 VLRLQRR  264 (312)
Q Consensus       258 i~~~~~~  264 (312)
                      +++....
T Consensus       233 v~d~~~~  239 (432)
T d1qksa2         233 VIDTKEG  239 (432)
T ss_dssp             EEETTTT
T ss_pred             Eeecccc
Confidence            7776543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=1e-15  Score=124.68  Aligned_cols=145  Identities=8%  Similarity=0.028  Sum_probs=110.4

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccc-cCCCccEEEEEEccCCCeE-EEe-cCCcEEEEEcCCCc
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELL-ISY-NDELVYLFEKNMGL  120 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~  120 (312)
                      +++++++.|++|++||+.+++++..              +. ..+...+..++|+|+|+++ +++ .++.|++||+.++ 
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~--------------i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-   66 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKV--------------ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-   66 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEE--------------EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEE--------------EECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-
Confidence            6899999999999999999884321              11 2234557789999999966 455 4899999999987 


Q ss_pred             CCCCCcCCcccccCCCCCceEecccCC---ceeeEEEEecCCCCEEEEecc------------CceEEEEeccCCeeEEE
Q 021484          121 GPSPLSLSPEDLQKREEPQVYSGHRNS---QTVKGVNFFGPNDEYVMSGSD------------CGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~~s~~~~~l~~~~~------------dg~v~iwd~~~~~~~~~  185 (312)
                                     +.+..+..+...   ..+..++| +|++++++++..            +..+.+||..+++....
T Consensus        67 ---------------~~~~~~~~~~~~~~~~~~~~v~~-s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (337)
T d1pbyb_          67 ---------------ETLGRIDLSTPEERVKSLFGAAL-SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA  130 (337)
T ss_dssp             ---------------CEEEEEECCBTTEEEECTTCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE
T ss_pred             ---------------cEEEEEecCCCcccccceeeEEE-cCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEe
Confidence                           566666544321   12567888 999999988764            56789999999998888


Q ss_pred             eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                      +..+ ..+..++|+|+++++++++.  .+.+||..++
T Consensus       131 ~~~~-~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~  164 (337)
T d1pbyb_         131 FEAP-RQITMLAWARDGSKLYGLGR--DLHVMDPEAG  164 (337)
T ss_dssp             EECC-SSCCCEEECTTSSCEEEESS--SEEEEETTTT
T ss_pred             cccc-CCceEEEEcCCCCEEEEEcC--CcceeeeecC
Confidence            8744 56788999999999988864  4677876643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=8.2e-14  Score=113.12  Aligned_cols=223  Identities=9%  Similarity=0.064  Sum_probs=137.5

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP   80 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |++||+.+.....++...  .       |...+..++|+|+|..+++++..|+.|++|++......         .   .
T Consensus        16 I~v~~~~~~~~l~~~~~~--~-------~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~---------~---~   74 (333)
T d1ri6a_          16 IHVWNLNHEGALTLTQVV--D-------VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA---------L---T   74 (333)
T ss_dssp             EEEEEECTTSCEEEEEEE--E-------CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC---------E---E
T ss_pred             EEEEEEcCCCCeEEEEEE--c-------CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc---------E---E
Confidence            589999865543443321  2       56789999999999434455666899999999765411         0   0


Q ss_pred             cccccCCCccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceE--ecccCCceeeEEEEe
Q 021484           81 RHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY--SGHRNSQTVKGVNFF  156 (312)
Q Consensus        81 ~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~v~~~  156 (312)
                      ......+...+..++|+|+|++|+++  .++.+.+|+....                ......  ..+..  .+.++.+ 
T Consensus        75 ~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~----------------~~~~~~~~~~~~~--~~~~v~~-  135 (333)
T d1ri6a_          75 FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG----------------LPVGVVDVVEGLD--GCHSANI-  135 (333)
T ss_dssp             EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT----------------EEEEEEEEECCCT--TBCCCEE-
T ss_pred             EeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccc----------------cceecccccCCCc--cceEEEe-
Confidence            00002234456689999999977775  3788999988764                222222  23333  3788888 


Q ss_pred             cCCCCEEEEecc-CceEEEEeccCCeeEEEe------ecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCCCC---
Q 021484          157 GPNDEYVMSGSD-CGHLFIWKKKGGKLVRLM------VGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFP---  225 (312)
Q Consensus       157 s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~------~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~---  225 (312)
                      +++++++++++. +..+.+|+..+.......      .........++|++++.+++... ..+...+|+.......   
T Consensus       136 s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  215 (333)
T d1ri6a_         136 SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC  215 (333)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred             eecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceee
Confidence            999998877664 567999997765332211      12334568899999999866554 5567777775433211   


Q ss_pred             -----CCCC---ChhhhhhhhccCCCCce-eEEecCCceEEEEEeccc
Q 021484          226 -----PLPD---NAEKIMKANKQGREDHS-RITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       226 -----~~~~---~~~~~~~~~~~~~~~~~-l~s~~~d~~i~i~~~~~~  264 (312)
                           ....   ..... ....+++++.+ +++...++.+.+|++...
T Consensus       216 ~~~~~~~~~~~~~~~~~-~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~  262 (333)
T d1ri6a_         216 VQTLDMMPENFSDTRWA-ADIHITPDGRHLYACDRTASLITVFSVSED  262 (333)
T ss_dssp             EEEEECSCTTCCSCCCE-EEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             eeeeeeeecCCCccccc-eeEEEecccCceeeecccCCeEEEEEEcCC
Confidence                 0110   01111 11224555554 455667788999987654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.54  E-value=6.4e-14  Score=114.15  Aligned_cols=153  Identities=7%  Similarity=0.040  Sum_probs=108.6

Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE-EEe-cCCcEEE
Q 021484           36 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-ISY-NDELVYL  113 (312)
Q Consensus        36 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~-~d~~i~i  113 (312)
                      ++|++++ +++++++.+++|.+||+.+++++              ..+...+...+.+++|+|||+++ +++ .++.|++
T Consensus         2 ~a~~~~~-~~l~~~~~~~~v~v~D~~t~~~~--------------~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~   66 (346)
T d1jmxb_           2 PALKAGH-EYMIVTNYPNNLHVVDVASDTVY--------------KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG   66 (346)
T ss_dssp             CCCCTTC-EEEEEEETTTEEEEEETTTTEEE--------------EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccCCCCC-cEEEEEcCCCEEEEEECCCCCEE--------------EEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEE
Confidence            4688888 89999999999999999999843              22213345567899999999965 455 4899999


Q ss_pred             EEcCCCcCCCCCcCCcccccCCCCCceEecccCC----ceeeEEEEecCCCCEEEEec------------cCceEEEEec
Q 021484          114 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS----QTVKGVNFFGPNDEYVMSGS------------DCGHLFIWKK  177 (312)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~v~~~s~~~~~l~~~~------------~dg~v~iwd~  177 (312)
                      ||+.++                +....+......    ..+..++| +|+|+++++++            .++.+.+|+.
T Consensus        67 ~d~~t~----------------~~~~~~~~~~~~~~~~~~~~~v~~-s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~  129 (346)
T d1jmxb_          67 IDLDTC----------------KNTFHANLSSVPGEVGRSMYSFAI-SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST  129 (346)
T ss_dssp             EETTTT----------------EEEEEEESCCSTTEEEECSSCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred             EeCccC----------------eeeeeecccccccccCCceEEEEE-ecCCCEEEEEecCCcceeeeeccCcceEEEEec
Confidence            999887                454444422211    12567888 99999998775            3677888988


Q ss_pred             cCCeeEEEeecC--ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          178 KGGKLVRLMVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       178 ~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      .+++....+..+  ...+..+.+++++..++++   +.+.+|++.++.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  174 (346)
T d1jmxb_         130 ADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGK  174 (346)
T ss_dssp             GGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCC
T ss_pred             ccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCC
Confidence            877655444322  2345566777777766543   568899987765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=2.3e-12  Score=105.50  Aligned_cols=253  Identities=9%  Similarity=-0.014  Sum_probs=140.1

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEE----------eCCCeEEEEEccCCeecCCCC
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG----------GSDEYARVYDIRKCHWYSPIS   70 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~----------~~dg~i~iwd~~~~~~~~~~~   70 (312)
                      |++||..+.+....+..             +....++|+|++ +.|++.          ..|+.|++||+.+++....+.
T Consensus        30 v~v~D~~tg~~~~~~~~-------------g~~~~~a~SpDg-~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~   95 (355)
T d2bbkh_          30 QFVIDGEAGRVIGMIDG-------------GFLPNPVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE   95 (355)
T ss_dssp             EEEEETTTTEEEEEEEE-------------CSSCEEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE
T ss_pred             EEEEECCCCcEEEEEEC-------------CCCCceEEcCCC-CEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEe
Confidence            46788887764444332             123478999999 555543          457899999999887543211


Q ss_pred             CCCCcccccccccccCCCccEEEEEEccCCCeEEEe---cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC
Q 021484           71 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY---NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS  147 (312)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (312)
                      .....      .  .........++|+|+++.++..   .+..+.+|+..++                +....+..+...
T Consensus        96 ~~~~~------~--~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~  151 (355)
T d2bbkh_          96 LPDAP------R--FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK----------------AFKRMLDVPDCY  151 (355)
T ss_dssp             ETTCC------C--CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT----------------EEEEEEECCSEE
T ss_pred             cCCcc------e--eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCC----------------cEeeEEecCCcc
Confidence            10000      0  0112223467899999866553   3678999999887                455555433211


Q ss_pred             -----ceeeEEEEecCCCCEEEEe-ccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          148 -----QTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       148 -----~~v~~v~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                           .....+.+ ++++..++.. ..++.+.+++....+     ..+...+....+.+.+..++.++.++.+++|++..
T Consensus       152 ~~~~~~~~~~~~~-~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  225 (355)
T d2bbkh_         152 HIFPTAPDTFFMH-CRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS  225 (355)
T ss_dssp             EEEEEETTEEEEE-ETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT
T ss_pred             eEeecCCcceEEE-cCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCC
Confidence                 00122333 3444433322 222333333322221     12334455677888888999999999999999988


Q ss_pred             CCCCCCC---CChhhhhhhhccCCCCceeEEecCC--------------------ceEEEEEecccCccc---------e
Q 021484          222 TDFPPLP---DNAEKIMKANKQGREDHSRITLTPD--------------------VIMHVLRLQRRQTLA---------Y  269 (312)
Q Consensus       222 ~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~d--------------------~~i~i~~~~~~~~~~---------~  269 (312)
                      +....+.   .+........ +.+.+...++.+.+                    ..+.+||..+.....         .
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~  304 (355)
T d2bbkh_         226 GDAKFLPAVEALTEAERADG-WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDS  304 (355)
T ss_dssp             SSCEECCCEESSCHHHHHTT-EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECE
T ss_pred             CcEEEEeccCCcccceEeee-eeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEE
Confidence            7643222   2222222221 12222222333222                    467888876653322         2


Q ss_pred             eEeecCCCc--cCCCCCCCeEEEeecCCCCC
Q 021484          270 RERRYNAAD--FESDEEEGETYLLGFSDSDA  298 (312)
Q Consensus       270 ~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~  298 (312)
                      ..++|++..  +.+...++.|+++|...+..
T Consensus       305 ~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         305 INVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             EEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence            256677653  34456677899999887763

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.42  E-value=1.9e-11  Score=100.72  Aligned_cols=221  Identities=12%  Similarity=-0.017  Sum_probs=121.5

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEe----------CCCeEEEEEccCCeecCCCC
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWYSPIS   70 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~   70 (312)
                      |++||..+.+....+..           +.  ...++|+|+| ++|++++          .++.|.+||..++++.....
T Consensus        49 v~v~D~~tg~~~~~~~~-----------~~--~~~~a~SpDG-~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~  114 (373)
T d2madh_          49 QWVLDAGSGSILGHVNG-----------GF--LPNPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE  114 (373)
T ss_pred             EEEEECCCCCEEEEEeC-----------CC--CccEEEcCCC-CEEEEEeecCCcccccccceEEEEEECCCCcEEEEEe
Confidence            45777777654433322           11  2368999999 6776653          46789999999988543321


Q ss_pred             CCCCcccccccccccCCCccEEEEEEccCCCeEEE-e-c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC
Q 021484           71 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS  147 (312)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (312)
                      .......        .-......+.|+++++.++. . . ++.+.+|+....                +..    .+...
T Consensus       115 ~~~~~~~--------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~----------------~~~----~~~~~  166 (373)
T d2madh_         115 LPDAPRF--------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS----------------SDD----QLLSS  166 (373)
T ss_pred             cCCccee--------EeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCC----------------eEE----EEecc
Confidence            1111000        00112246789999985443 2 3 678889987654                111    11111


Q ss_pred             ceeeEEEEecCCCCEE-EEeccCceEEEEeccCCeeEEEe----------------------------------------
Q 021484          148 QTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLM----------------------------------------  186 (312)
Q Consensus       148 ~~v~~v~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~----------------------------------------  186 (312)
                        ..++.+ +++++.+ ++.+.|+.+.+|+...++.....                                        
T Consensus       167 --~~~~~~-s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         167 --PTCYHI-HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA  243 (373)
T ss_pred             --ceeEEE-ecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCC
Confidence              344555 5555433 45556666666665433322111                                        


Q ss_pred             ---------ecCc----------cceEEEEEcCCCCeE----------EEEeCCCcEEEccCCCCCCCCCCCChhhhhhh
Q 021484          187 ---------VGDR----------HVVNQLEPHPHIPMF----------ATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKA  237 (312)
Q Consensus       187 ---------~~~~----------~~v~~~~~~p~~~~l----------~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  237 (312)
                               ..+.          .....++++|++..+          ++...++.+.+||..+++......+...+ ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~-~~  322 (373)
T d2madh_         244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDV-DA  322 (373)
T ss_pred             CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCe-eE
Confidence                     0000          111234455555443          34455677889998887642222233333 23


Q ss_pred             hccCCCCc--eeEEecCCceEEEEEecccCcc
Q 021484          238 NKQGREDH--SRITLTPDVIMHVLRLQRRQTL  267 (312)
Q Consensus       238 ~~~~~~~~--~l~s~~~d~~i~i~~~~~~~~~  267 (312)
                      ..++++++  ++++++.|+.+++||+.+.+..
T Consensus       323 ~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         323 ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             EEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            44777776  4468899999999998877543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=3.5e-12  Score=103.26  Aligned_cols=149  Identities=9%  Similarity=0.106  Sum_probs=105.8

Q ss_pred             cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec-CCcEEEEEcCCCcC
Q 021484           44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-DELVYLFEKNMGLG  121 (312)
Q Consensus        44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d~~i~iwd~~~~~~  121 (312)
                      ..+++++.|++|++|++......            ..... ..|...+..|+|+|+|++|++ +. |+.|++|++...  
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l------------~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~--   69 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGAL------------TLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD--   69 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCE------------EEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT--
T ss_pred             EEEEECCCCCcEEEEEEcCCCCe------------EEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC--
Confidence            35677789999999999754310            11111 356778999999999997755 44 899999999765  


Q ss_pred             CCCCcCCcccccCCCCCceEeccc-CCceeeEEEEecCCCCEEEEecc-CceEEEEeccCCeeEEEe--ecCccceEEEE
Q 021484          122 PSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLM--VGDRHVVNQLE  197 (312)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~  197 (312)
                                    .....+..+. ....+..++| +|+|++|++++. ++.+.+|+..........  ..+...+.++.
T Consensus        70 --------------~~~~~~~~~~~~~~~p~~l~~-spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~  134 (333)
T d1ri6a_          70 --------------DGALTFAAESALPGSLTHIST-DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSAN  134 (333)
T ss_dssp             --------------TCCEEEEEEEECSSCCSEEEE-CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCE
T ss_pred             --------------CCcEEEeeecccCCCceEEEE-cCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEE
Confidence                          2222222221 1123778999 999999988874 778999998776554433  34666788999


Q ss_pred             EcCCCCeEEEEe-CCCcEEEccCCCC
Q 021484          198 PHPHIPMFATCG-IEKTVKLWAPMPT  222 (312)
Q Consensus       198 ~~p~~~~l~t~~-~d~~i~iwd~~~~  222 (312)
                      ++|++++++.++ .+..|.+|+....
T Consensus       135 ~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_         135 ISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             eeecceeeeccccccceeeEEEeccC
Confidence            999999977777 5567999997654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.40  E-value=3e-11  Score=99.49  Aligned_cols=184  Identities=8%  Similarity=-0.027  Sum_probs=114.4

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecC
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND  108 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d  108 (312)
                      |.....++.|+|++...+++.+.|+++.+|+...+......         ...............+.+.+++.+++.+.+
T Consensus       163 ~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (373)
T d2madh_         163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL---------VGAMLTAAQNLLTQPAQANKSGRIVWPVYS  233 (373)
T ss_pred             EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEE---------eeeccccCccceeeeEEECCCceEEEecCC
Confidence            34456788999999778889999999999999877632211         000011122233445667777777777779


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE---------ecCCCCEEEEeccCceEEEEeccC
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF---------FGPNDEYVMSGSDCGHLFIWKKKG  179 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~---------~s~~~~~l~~~~~dg~v~iwd~~~  179 (312)
                      +.+++|+..+.......   ....   .................+++         ....+..+++...++.+.+||..+
T Consensus       234 ~~v~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t  307 (373)
T d2madh_         234 GKILQADISAAGATNKA---PIDA---LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV  307 (373)
T ss_pred             ceEEEEEcCCCeEEEEE---eecc---ccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC
Confidence            99999998765200000   0000   00000000000001222333         123344455666788899999999


Q ss_pred             CeeEEEeecCccceEEEEEcCCCCe--EEEEeCCCcEEEccCCCCCC-CCCC
Q 021484          180 GKLVRLMVGDRHVVNQLEPHPHIPM--FATCGIEKTVKLWAPMPTDF-PPLP  228 (312)
Q Consensus       180 ~~~~~~~~~~~~~v~~~~~~p~~~~--l~t~~~d~~i~iwd~~~~~~-~~~~  228 (312)
                      ++.+..+. +...+..++|+|+|+.  +++++.|++|++||+.+++. .++.
T Consensus       308 ~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         308 GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            99888776 5567899999999984  56788999999999998874 4443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.37  E-value=4.5e-12  Score=103.67  Aligned_cols=203  Identities=10%  Similarity=0.016  Sum_probs=122.7

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEE--eCCCeEEEEEccCCeecCCCCCCCCcccc
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG--GSDEYARVYDIRKCHWYSPISSDTPVDTF   78 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   78 (312)
                      |++||+.+.+....+.....+..    ........++|+|++ +.++.+  +.+..+.+|+..+++.............+
T Consensus        80 v~v~D~~t~~~~~~~~~~~~~~~----~~~~~~~~~~~s~dg-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIELPDAPRF----LVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF  154 (355)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCC----CBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred             EEEEECCCCCEEEEEecCCccee----ecCCCCceEEEecCC-CeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEe
Confidence            57899998876655554322210    112334568999999 555554  45678999999988765433221110000


Q ss_pred             c------------------------------ccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcC
Q 021484           79 C------------------------------PRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSL  127 (312)
Q Consensus        79 ~------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~  127 (312)
                      .                              .......+...+....+.+++..++.+ .++.+++|++..+..      
T Consensus       155 ~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------  228 (355)
T d2bbkh_         155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA------  228 (355)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC------
T ss_pred             ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE------
Confidence            0                              000001122223344566666655554 588888888876521      


Q ss_pred             CcccccCCCCCceEeccc--------CCceeeEEEEecCCCCEEEEeccC----------ceEEEEeccCCeeEEEeecC
Q 021484          128 SPEDLQKREEPQVYSGHR--------NSQTVKGVNFFGPNDEYVMSGSDC----------GHLFIWKKKGGKLVRLMVGD  189 (312)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~--------~~~~v~~v~~~s~~~~~l~~~~~d----------g~v~iwd~~~~~~~~~~~~~  189 (312)
                              ..+.....+.        .+.....+++ ++++..++....+          ..|.+||..+++.+..+.. 
T Consensus       229 --------~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-  298 (355)
T d2bbkh_         229 --------KFLPAVEALTEAERADGWRPGGWQQVAY-HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-  298 (355)
T ss_dssp             --------EECCCEESSCHHHHHTTEEECSSSCEEE-ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-
T ss_pred             --------EEEeccCCcccceEeeeeeccceEEEEE-eCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-
Confidence                    0111111110        0011345777 8888887765443          4799999999998888864 


Q ss_pred             ccceEEEEEcCCCCe--EEEEeCCCcEEEccCCCCCC
Q 021484          190 RHVVNQLEPHPHIPM--FATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       190 ~~~v~~~~~~p~~~~--l~t~~~d~~i~iwd~~~~~~  224 (312)
                      ...+.+++|+|+|+.  +++++.|++|++||+++++.
T Consensus       299 ~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence            356789999999983  56677899999999998874

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.32  E-value=3.7e-11  Score=102.32  Aligned_cols=96  Identities=13%  Similarity=0.128  Sum_probs=74.9

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEe---------CCCeEEEEEccCCeecCCCCC
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG---------SDEYARVYDIRKCHWYSPISS   71 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~   71 (312)
                      |.+||+.+++...++....+.      .|...|.++.|||++ +.|+.++         .++.+.+||+.+++..     
T Consensus        38 ~~~~~~~t~~~~~~~~~~~~~------~~~~~i~~~~~SpDg-~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-----  105 (470)
T d2bgra1          38 ILVFNAEYGNSSVFLENSTFD------EFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-----  105 (470)
T ss_dssp             EEEEETTTCCEEEEECTTTTT------TSSSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-----
T ss_pred             EEEEECCCCCEEEEEchhhhh------hccCccceeEECCCC-CEEEEEECCcceeeeccCceEEEEECCCCccc-----
Confidence            468999988766555433332      367789999999999 6777764         3578899999988732     


Q ss_pred             CCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021484           72 DTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG  119 (312)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~  119 (312)
                                . +..+...+..+.|||+|+.+|...++.+++|+..++
T Consensus       106 ----------~-l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g  142 (470)
T d2bgra1         106 ----------T-EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNL  142 (470)
T ss_dssp             ----------C-SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTS
T ss_pred             ----------c-cccCCccccccccccCcceeeEeecccceEEECCCC
Confidence                      1 156678899999999999999988999999998876

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.23  E-value=2.9e-11  Score=103.05  Aligned_cols=145  Identities=8%  Similarity=0.017  Sum_probs=105.3

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec------
Q 021484           34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN------  107 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~------  107 (312)
                      ..+.|.+++ +++..  .++.+.+||+.+++...         . .....+..|...|.++.|||||++|+...      
T Consensus        20 ~~~~W~~d~-~~~~~--~~~~~~~~~~~t~~~~~---------~-~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~   86 (470)
T d2bgra1          20 YSLRWISDH-EYLYK--QENNILVFNAEYGNSSV---------F-LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW   86 (470)
T ss_dssp             CCCEECSSS-EEEEE--SSSCEEEEETTTCCEEE---------E-ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred             cCCEeCCCC-EEEEE--cCCcEEEEECCCCCEEE---------E-EchhhhhhccCccceeEECCCCCEEEEEECCccee
Confidence            467899988 66653  57889999999887311         1 11122256677899999999999877643      


Q ss_pred             ----CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484          108 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  183 (312)
Q Consensus       108 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  183 (312)
                          ++.+++||+.++                 ....+..+...  +..+.| +|+|++++.. .++.+++|+..+++..
T Consensus        87 r~s~~~~~~l~d~~~~-----------------~~~~l~~~~~~--~~~~~~-SPDG~~ia~~-~~~~l~~~~~~~g~~~  145 (470)
T d2bgra1          87 RHSYTASYDIYDLNKR-----------------QLITEERIPNN--TQWVTW-SPVGHKLAYV-WNNDIYVKIEPNLPSY  145 (470)
T ss_dssp             SSCEEEEEEEEETTTT-----------------EECCSSCCCTT--EEEEEE-CSSTTCEEEE-ETTEEEEESSTTSCCE
T ss_pred             eeccCceEEEEECCCC-----------------cccccccCCcc--cccccc-ccCcceeeEe-ecccceEEECCCCcee
Confidence                357899999886                 34455666655  889999 9999999985 5778999999988766


Q ss_pred             EEeecC------------------ccceEEEEEcCCCCeEEEEeCCC
Q 021484          184 RLMVGD------------------RHVVNQLEPHPHIPMFATCGIEK  212 (312)
Q Consensus       184 ~~~~~~------------------~~~v~~~~~~p~~~~l~t~~~d~  212 (312)
                      .....+                  .+....+.|+|+|+.|+....|.
T Consensus       146 ~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             eeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence            543221                  12345578999999998887543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.18  E-value=1.4e-10  Score=95.46  Aligned_cols=230  Identities=8%  Similarity=-0.041  Sum_probs=125.5

Q ss_pred             EEEEcCCCCcEEEEE----------eCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021484           35 AIVIDPRNPNYFAVG----------GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI  104 (312)
Q Consensus        35 ~~~~~p~~~~~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  104 (312)
                      .++|+|++ +.|++.          +.|+.|++||..++++...+..+....        .........++|+|+|++|+
T Consensus        69 ~~a~spDg-~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~--------~~~g~~p~~~a~SpDGk~l~  139 (368)
T d1mdah_          69 LAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR--------FSVGPRVHIIGNCASSACLL  139 (368)
T ss_dssp             EEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--------CCBSCCTTSEEECTTSSCEE
T ss_pred             cceECCCC-CEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce--------ecccCCccceEECCCCCEEE
Confidence            58999999 566654          347889999999887432211100000        01112223689999999776


Q ss_pred             Ee--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021484          105 SY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  182 (312)
Q Consensus       105 s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~  182 (312)
                      .+  .++.+.+||+.++                +....+..+...  .  + + ......+++.+.||.+.++++.....
T Consensus       140 va~~~~~~v~~~d~~~~----------------~~~~~~~~~~~~--~--~-~-~~~~~~~v~~~~Dg~~~~~~~~~~~~  197 (368)
T d1mdah_         140 FFLFGSSAAAGLSVPGA----------------SDDQLTKSASCF--H--I-H-PGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             EEECSSSCEEEEEETTT----------------EEEEEEECSSCC--C--C-E-EEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             EEeCCCCeEEEEECCCC----------------cEeEEeeccCcc--e--E-c-cCCCceEEEEcCCCCEEEEEecCCce
Confidence            54  4899999999887                566665544322  1  1 1 22345666777888888888765433


Q ss_pred             EEEe------ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC---CCCCChhhhhhh---------hccCCCC
Q 021484          183 VRLM------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP---PLPDNAEKIMKA---------NKQGRED  244 (312)
Q Consensus       183 ~~~~------~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~---------~~~~~~~  244 (312)
                      ....      ..+...+..+.+.+++..+.+.  .+.+.+++.......   ............         ...++++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~  275 (368)
T d1mdah_         198 AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT  275 (368)
T ss_dssp             CCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred             eeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCC
Confidence            2211      1233444567777777665544  455666665554421   111111111111         1122233


Q ss_pred             ceeEEe-c--------CCceEEEEEecccCccce---------eEeecCCCc--cCCCCCCCeEEEeecCCCC
Q 021484          245 HSRITL-T--------PDVIMHVLRLQRRQTLAY---------RERRYNAAD--FESDEEEGETYLLGFSDSD  297 (312)
Q Consensus       245 ~~l~s~-~--------~d~~i~i~~~~~~~~~~~---------~~~~~~~~~--~~~~~~~~~v~~~~~~~~~  297 (312)
                      ..++.. .        ....+.+||..+......         ..+++++..  +.+...++.|+++|...+.
T Consensus       276 ~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            322221 1        113577888765532221         255666653  2344556678888887665

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.16  E-value=6.3e-10  Score=92.21  Aligned_cols=197  Identities=11%  Similarity=0.037  Sum_probs=123.0

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eEEEecC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISYND  108 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~d  108 (312)
                      -.+....++|+|..++++...+.+|.++|+.+.++              ...+...+...+..++|+|+|+  +++...+
T Consensus        72 P~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~--------------~~ii~iP~g~gphgi~~spdg~t~YV~~~~~  137 (441)
T d1qnia2          72 PHISMTDGRYDGKYLFINDKANTRVARIRLDIMKT--------------DKITHIPNVQAIHGLRLQKVPKTNYVFCNAE  137 (441)
T ss_dssp             CEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE--------------EEEEECTTCCCEEEEEECCSSBCCEEEEEEC
T ss_pred             CCcceecccCCCCEEEEEcCCCCEEEEEECCCCcE--------------eeEEecCCCCCccceEEeccCCEEEEEeccC
Confidence            34555666899944446667889999999999873              2222133456789999999997  4444444


Q ss_pred             CcE------------------EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC-
Q 021484          109 ELV------------------YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-  169 (312)
Q Consensus       109 ~~i------------------~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d-  169 (312)
                      ..+                  ..+|..+.                +.........   .+..+.| +|+|+++++.+.+ 
T Consensus       138 ~~v~~~~dg~~~~~~~~~~~~~~iD~~t~----------------~v~~qI~v~~---~p~~v~~-spdGk~a~vt~~ns  197 (441)
T d1qnia2         138 FVIPQPNDGTDFSLDNSYTMFTAIDAETM----------------DVAWQVIVDG---NLDNTDA-DYTGKYATSTCYNS  197 (441)
T ss_dssp             SCEESSCSSSCCCGGGEEEEEEEEETTTC----------------SEEEEEEESS---CCCCEEE-CSSSSEEEEEESCT
T ss_pred             CcccccCcccccccccccceEEeecCccc----------------eeeEEEecCC---CccceEE-CCCCCEEEEEecCC
Confidence            444                  33555443                3333333222   2677888 8888888766532 


Q ss_pred             ----------------------------------------ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE-EEE
Q 021484          170 ----------------------------------------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF-ATC  208 (312)
Q Consensus       170 ----------------------------------------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~t~  208 (312)
                                                              +.+.+++....+.+..+..+.. ...+.++|+|+++ +++
T Consensus       198 e~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~  276 (441)
T d1qnia2         198 ERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANG  276 (441)
T ss_dssp             TCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEEC
T ss_pred             CceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeC
Confidence                                                    3444454454555666665543 5789999999985 556


Q ss_pred             eCCCcEEEccCCCCC--CCCCCCChhhhhh---------hhccCCCCceeEEecCCceEEEEEec
Q 021484          209 GIEKTVKLWAPMPTD--FPPLPDNAEKIMK---------ANKQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       209 ~~d~~i~iwd~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                      ..+++|.+||+.+..  +..-......+..         -..+...+..+.+..-|+.+..|++.
T Consensus       277 ~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         277 KLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             TTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             CcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            689999999986522  1111111111110         01244566778889999999999974

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.12  E-value=2.7e-10  Score=93.74  Aligned_cols=72  Identities=8%  Similarity=-0.015  Sum_probs=55.0

Q ss_pred             eEEEEecCCCCEEEEecc---------CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe--EEEEeCCCcEEEccC
Q 021484          151 KGVNFFGPNDEYVMSGSD---------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM--FATCGIEKTVKLWAP  219 (312)
Q Consensus       151 ~~v~~~s~~~~~l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~--l~t~~~d~~i~iwd~  219 (312)
                      ..+++ ++++..++....         ...|.+||..+++.+..+.. ...+..++|+|+|+.  ++++..|++|++||.
T Consensus       267 ~~~a~-~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         267 QMVAK-LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             SCEEE-ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             eeEEE-cCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            34666 777777665432         24699999999998887763 357889999999973  566678999999999


Q ss_pred             CCCCC
Q 021484          220 MPTDF  224 (312)
Q Consensus       220 ~~~~~  224 (312)
                      .+++.
T Consensus       345 ~tgk~  349 (368)
T d1mdah_         345 ASDQD  349 (368)
T ss_dssp             SSCEE
T ss_pred             CCCCE
Confidence            98763

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.95  E-value=1.1e-08  Score=84.63  Aligned_cols=220  Identities=10%  Similarity=0.053  Sum_probs=124.1

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeE------------------EEEEccC
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYA------------------RVYDIRK   62 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i------------------~iwd~~~   62 (312)
                      |.++|+++.+...++.+.          +...+..++|+|++...+++...+..+                  ..+|..+
T Consensus        96 VavIDl~t~k~~~ii~iP----------~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t  165 (441)
T d1qnia2          96 VARIRLDIMKTDKITHIP----------NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET  165 (441)
T ss_dssp             EEEEETTTTEEEEEEECT----------TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT
T ss_pred             EEEEECCCCcEeeEEecC----------CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc
Confidence            457888887777776654          344789999999984333333333333                  3345444


Q ss_pred             CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC-CcE--------------EEEEcCCC-------
Q 021484           63 CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND-ELV--------------YLFEKNMG-------  119 (312)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d-~~i--------------~iwd~~~~-------  119 (312)
                      .+.              ...+..  ......++|+|+|++++++ .+ ..+              .+.+....       
T Consensus       166 ~~v--------------~~qI~v--~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dG  229 (441)
T d1qnia2         166 MDV--------------AWQVIV--DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAG  229 (441)
T ss_dssp             CSE--------------EEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTT
T ss_pred             cee--------------eEEEec--CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCC
Confidence            331              111111  2345678999999966654 22 222              22221100       


Q ss_pred             c---CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE-EeccCceEEEEeccCCee--------EEEee
Q 021484          120 L---GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGGKL--------VRLMV  187 (312)
Q Consensus       120 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~-~~~~dg~v~iwd~~~~~~--------~~~~~  187 (312)
                      +   ........++.....+.+..+.....   ...+.+ +|+|++++ ++..+++|.+||+.+.+.        ...+.
T Consensus       230 k~~~v~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~v-SPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~  305 (441)
T d1qnia2         230 NFKTIGDSKVPVVDGRGESEFTRYIPVPKN---PHGLNT-SPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV  305 (441)
T ss_dssp             CCBCCTTCCCCEEECSSSCSSEEEECCBSS---CCCEEE-CTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE
T ss_pred             CEEEeCCCCcEEEEcccCCceEEEEeCCCC---ccCceE-CCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE
Confidence            0   00001111111222234444444332   578888 99999875 567899999999764221        00111


Q ss_pred             cC---ccceEEEEEcCCCCeEEEEeCCCcEEEccCCC-------CCC---------CCCCCChhhhhhhhccCCCCceeE
Q 021484          188 GD---RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP-------TDF---------PPLPDNAEKIMKANKQGREDHSRI  248 (312)
Q Consensus       188 ~~---~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~l~  248 (312)
                      ++   .-.....+|.++|..+.+...|.+|..|++..       ...         ...++|...+... ..++++.+|+
T Consensus       306 ~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~-t~~pdGk~l~  384 (441)
T d1qnia2         306 AEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTE-SRDADGKWLV  384 (441)
T ss_dssp             ECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTT-STTCCCCEEE
T ss_pred             eecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcccccc-ccCCCCcEEE
Confidence            11   11235568999998888999999999999641       111         1124566655443 4788999999


Q ss_pred             Eec
Q 021484          249 TLT  251 (312)
Q Consensus       249 s~~  251 (312)
                      +++
T Consensus       385 s~~  387 (441)
T d1qnia2         385 VLS  387 (441)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            983

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.93  E-value=1.1e-07  Score=73.94  Aligned_cols=228  Identities=8%  Similarity=0.010  Sum_probs=128.6

Q ss_pred             ccceEEEEEcCCCCcEEEE-EeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021484           30 SIRLNAIVIDPRNPNYFAV-GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-  107 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-  107 (312)
                      .....+++++++| +++++ .+..+.+..++.......              ... ..-......++++++++++++.. 
T Consensus        13 ~~~P~~vavd~dG-~i~v~~~~~~~~i~~~~~~~~~~~--------------~~~-~~~~~~p~gvav~~~g~i~v~d~~   76 (260)
T d1rwia_          13 RLSPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTT--------------VLP-FNGLYQPQGLAVDGAGTVYVTDFN   76 (260)
T ss_dssp             CCCEEEEEECTTC-CEEEEECSSSCEEEEEC----CEE--------------ECC-CCSCCSCCCEEECTTCCEEEEETT
T ss_pred             cCCCCEEEEcCCC-CEEEEEcCCCCEEEEEcCCCceEE--------------Eec-cCCccCceEEEEcCCCCEEEeeee
Confidence            4456899999998 65555 456677777766543210              000 11122356789999999887764 


Q ss_pred             CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484          108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  187 (312)
                      .+.+++++..+.                .......+ .  .....+++ +++++++++-.....+..++...........
T Consensus        77 ~~~i~~~~~~~~----------------~~~~~~~~-~--~~p~~iav-d~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~  136 (260)
T d1rwia_          77 NRVVTLAAGSNN----------------QTVLPFDG-L--NYPEGLAV-DTQGAVYVADRGNNRVVKLAAGSKTQTVLPF  136 (260)
T ss_dssp             TEEEEECTTCSC----------------CEECCCCS-C--CSEEEEEE-CTTCCEEEEEGGGTEEEEECTTCSSCEECCC
T ss_pred             eceeeeeeeccc----------------eeeeeeee-e--eecccccc-cccceeEeeccccccccccccccceeeeeee
Confidence            555555543332                12111111 1  23688998 8899988887777788888876543322222


Q ss_pred             cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCC-CChhhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484          188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       188 ~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~  266 (312)
                      ........++++|+++++++...++.|..++..+.....+. ...... .-....+++.++++-...+.+..++......
T Consensus       137 ~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p-~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~  215 (260)
T d1rwia_         137 TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAP-WGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  215 (260)
T ss_dssp             CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSE-EEEEECTTCCEEEEETTTTEEEEECTTCSCC
T ss_pred             cccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCC-ccceeeeeeeeeeeecCCCEEEEEeCCCCeE
Confidence            22345578999999998888888889999998766432221 111111 1122445667777777777776665433221


Q ss_pred             cceeEee-cCCCccCCCCCCCeEEEeecCC
Q 021484          267 LAYRERR-YNAADFESDEEEGETYLLGFSD  295 (312)
Q Consensus       267 ~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~  295 (312)
                      ....... .....++.+. ++.+|+.|..+
T Consensus       216 ~~~~~~~~~~P~~i~~d~-~g~l~vad~~~  244 (260)
T d1rwia_         216 TVLPFTGLNTPLAVAVDS-DRTVYVADRGN  244 (260)
T ss_dssp             EECCCCSCCCEEEEEECT-TCCEEEEEGGG
T ss_pred             EEEccCCCCCeEEEEEeC-CCCEEEEECCC
Confidence            1111110 0112333333 35688877643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.88  E-value=1.6e-07  Score=72.88  Aligned_cols=156  Identities=10%  Similarity=0.031  Sum_probs=104.8

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCc
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL  110 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~  110 (312)
                      ....+++++++ +++++....+.+++++-.+....              ..  .........+++.++++++++- ....
T Consensus        58 ~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~~~~--------------~~--~~~~~~p~~iavd~~g~i~v~d~~~~~  120 (260)
T d1rwia_          58 QPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQTV--------------LP--FDGLNYPEGLAVDTQGAVYVADRGNNR  120 (260)
T ss_dssp             SCCCEEECTTC-CEEEEETTTEEEEECTTCSCCEE--------------CC--CCSCCSEEEEEECTTCCEEEEEGGGTE
T ss_pred             CceEEEEcCCC-CEEEeeeeeceeeeeeeccceee--------------ee--eeeeeecccccccccceeEeecccccc
Confidence            35678899988 77777777677766554433311              00  1123457889999999977775 4667


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCc
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  190 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  190 (312)
                      +..++....                 ....+. .........+++ +++++++++...++.|..++..............
T Consensus       121 ~~~~~~~~~-----------------~~~~~~-~~~~~~p~~i~~-~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~  181 (260)
T d1rwia_         121 VVKLAAGSK-----------------TQTVLP-FTGLNDPDGVAV-DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI  181 (260)
T ss_dssp             EEEECTTCS-----------------SCEECC-CCSCCSCCEEEE-CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC
T ss_pred             ccccccccc-----------------eeeeee-ecccCCcceeee-cCCCCEeeeccccccccccccccceeeeeecccc
Confidence            777776543                 111111 111122678888 8899988888889999999987554433222344


Q ss_pred             cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          191 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       191 ~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      .....+++.++++++++....+.|..++..+..
T Consensus       182 ~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~  214 (260)
T d1rwia_         182 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  214 (260)
T ss_dssp             CSEEEEEECTTCCEEEEETTTTEEEEECTTCSC
T ss_pred             CCCccceeeeeeeeeeeecCCCEEEEEeCCCCe
Confidence            567899999999988888888889888876654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.80  E-value=1.8e-06  Score=68.29  Aligned_cols=195  Identities=10%  Similarity=0.012  Sum_probs=125.7

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCc
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL  110 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~  110 (312)
                      .+..++++|+| +++++...+++|..++......              .   +......+.+++|+++|+++++. .++.
T Consensus        29 ~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g~~~--------------~---~~~~~~~~~gla~~~dG~l~v~~~~~~~   90 (302)
T d2p4oa1          29 FLENLASAPDG-TIFVTNHEVGEIVSITPDGNQQ--------------I---HATVEGKVSGLAFTSNGDLVATGWNADS   90 (302)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTTCCEE--------------E---EEECSSEEEEEEECTTSCEEEEEECTTS
T ss_pred             CcCCEEECCCC-CEEEEeCCCCEEEEEeCCCCEE--------------E---EEcCCCCcceEEEcCCCCeEEEecCCce
Confidence            47899999999 8999999999998888654321              0   12334678999999999988875 5788


Q ss_pred             EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec--
Q 021484          111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--  188 (312)
Q Consensus       111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--  188 (312)
                      +..++.....               .....+...........+++ .++++++++.+.++.+..++...+........  
T Consensus        91 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~n~i~~-~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~  154 (302)
T d2p4oa1          91 IPVVSLVKSD---------------GTVETLLTLPDAIFLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM  154 (302)
T ss_dssp             CEEEEEECTT---------------SCEEEEEECTTCSCEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGG
T ss_pred             EEEEEecccc---------------cceeeccccCCccccceeEE-ccCCCEEeeccccccceeeeccCCcceeEecCCc
Confidence            8888775431               12222222222234788998 89999999989999999999887754332221  


Q ss_pred             --------CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCC--hhhhhhhhccCCCCceeEEecCCceEEE
Q 021484          189 --------DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDN--AEKIMKANKQGREDHSRITLTPDVIMHV  258 (312)
Q Consensus       189 --------~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~i  258 (312)
                              ....+..+.++.+ ..+++.+..+.|..+++...........  ......-..+..++.+.++...++.|..
T Consensus       155 ~~~~~~~~~~~~~ngi~~~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~  233 (302)
T d2p4oa1         155 LARSNSESVFPAANGLKRFGN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVR  233 (302)
T ss_dssp             GSCSSTTCCSCSEEEEEEETT-EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred             cceeeccCcccccccccccCC-ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEE
Confidence                    1123456666532 3455666788888888765432111100  0111222345567778888777787776


Q ss_pred             EEe
Q 021484          259 LRL  261 (312)
Q Consensus       259 ~~~  261 (312)
                      ++.
T Consensus       234 i~p  236 (302)
T d2p4oa1         234 IAP  236 (302)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.78  E-value=4.5e-07  Score=73.97  Aligned_cols=180  Identities=9%  Similarity=0.015  Sum_probs=99.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec-CC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-DE  109 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d~  109 (312)
                      .+.++.|+|++..++++......|.+|+.......         .. ...............++|+|+++++.. .. ++
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~---------~~-~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~  215 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV---------EL-VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN  215 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE---------EE-EEEEECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCce---------ee-ccceeecCCCCceEEEEECCCCceEEEeccCCC
Confidence            46899999999434444444568888876532200         00 001111223456889999999996655 44 89


Q ss_pred             cEEEEEcCCCcCCCCCcCCccccc-CCCCCceEecccCCceeeEEEEecCCCCEEEEecc------CceEEEEeccCCee
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQ-KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKKKGGKL  182 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~------dg~v~iwd~~~~~~  182 (312)
                      +|.+|++...............+. ...................+.+ +|+|++|+++..      .+.|..|++.....
T Consensus       216 ~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~  294 (365)
T d1jofa_         216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL-TFSGKYMFASSRANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE-CTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred             EEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEE-CCCCCEEEEEcccCCCccceEEEEEEecCCCc
Confidence            999999876521000000000000 0000000000011112456787 999999988743      23477777654322


Q ss_pred             EEE---e---ecCccceEEEEEcC-CCCeEEEEe-CCCcEEEccCCCC
Q 021484          183 VRL---M---VGDRHVVNQLEPHP-HIPMFATCG-IEKTVKLWAPMPT  222 (312)
Q Consensus       183 ~~~---~---~~~~~~v~~~~~~p-~~~~l~t~~-~d~~i~iwd~~~~  222 (312)
                      +..   +   .........++++| +|++|+.++ .++.|.+|+++..
T Consensus       295 ~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         295 IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            211   1   11234557799998 789866664 7799999987654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=4.3e-06  Score=64.58  Aligned_cols=196  Identities=8%  Similarity=0.045  Sum_probs=103.3

Q ss_pred             ccceEEEEEcCCCCcEEEEE-eCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484           30 SIRLNAIVIDPRNPNYFAVG-GSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY  106 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  106 (312)
                      ...+...+|||+| +.||-. ...+  .+.+.+...+..               . .+..+........|+|+|+.++..
T Consensus        38 ~~~~~sP~wSPDG-k~IAf~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~~~spdg~~i~~~  100 (269)
T d2hqsa1          38 PQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAV---------------R-QVASFPRHNGAPAFSPDGSKLAFA  100 (269)
T ss_dssp             SSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCE---------------E-EEECCSSCEEEEEECTTSSEEEEE
T ss_pred             CCceeeeEECCCC-CEEEEEEeeccCcceeeeecccCce---------------e-EEeeeecccccceecCCCCeeeEe
Confidence            4467889999999 555544 3333  355555554431               1 114456778889999999976663


Q ss_pred             --cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE-EEeccCc--eEEEEeccCCe
Q 021484          107 --NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCG--HLFIWKKKGGK  181 (312)
Q Consensus       107 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l-~~~~~dg--~v~iwd~~~~~  181 (312)
                        ..+...++......               ...........  ......+ ++.++.+ ++...+|  .|...++..+.
T Consensus       101 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~g~~~i~~~~~~~~~  162 (269)
T d2hqsa1         101 LSKTGSLNLYVMDLAS---------------GQIRQVTDGRS--NNTEPTW-FPDSQNLAFTSDQAGRPQVYKVNINGGA  162 (269)
T ss_dssp             ECTTSSCEEEEEETTT---------------CCEEECCCCSS--CEEEEEE-CTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             eecCCccceeeccccc---------------ccceeeeeccc--ccccccc-ccccccceecccccCCceEeeeeccccc
Confidence              34444444333220               11111111221  1334445 5665554 4444444  46666666554


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeCC-Cc--EEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEec---CCce
Q 021484          182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIE-KT--VKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT---PDVI  255 (312)
Q Consensus       182 ~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d-~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~  255 (312)
                      . ..+..+........|+|+++.++..+.+ +.  |.+.+...+....+.. .... ..-.++++++.++-.+   ....
T Consensus       163 ~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~-~~p~~SPDG~~i~f~s~~~~~~~  239 (269)
T d2hqsa1         163 P-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS-TFLD-ETPSLAPNGTMVIYSSSQGMGSV  239 (269)
T ss_dssp             C-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-SSSC-EEEEECTTSSEEEEEEEETTEEE
T ss_pred             c-eeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeec-Cccc-cceEECCCCCEEEEEEcCCCCcE
Confidence            3 3344455667788999999997776644 44  4445555444322221 1111 1223677776665322   2244


Q ss_pred             EEEEEecc
Q 021484          256 MHVLRLQR  263 (312)
Q Consensus       256 i~i~~~~~  263 (312)
                      +.++++..
T Consensus       240 l~~~~~dg  247 (269)
T d2hqsa1         240 LNLVSTDG  247 (269)
T ss_dssp             EEEEETTS
T ss_pred             EEEEECCC
Confidence            55555543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.70  E-value=3e-06  Score=66.19  Aligned_cols=211  Identities=9%  Similarity=0.132  Sum_probs=120.4

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCC--Cccccccc---------------------------
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT--PVDTFCPR---------------------------   81 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~---------------------------   81 (312)
                      .....++++|++ +++++-..++.|++||.. ++.........  .-..+.+.                           
T Consensus        23 ~~P~gvavd~dg-~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          23 TEPSGVAVNAQN-DIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             SCEEEEEECTTC-CEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             CCccEEEEcCCC-CEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence            356899999988 788887788999999975 33221110000  00000000                           


Q ss_pred             ------ccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEE
Q 021484           82 ------HLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN  154 (312)
Q Consensus        82 ------~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  154 (312)
                            .+..........+++.++|.++++. ..+.+.+++...                 +.+..+...........++
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-----------------~~~~~~g~~~~~~~~~~i~  163 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-----------------NVLHKFGCSKHLEFPNGVV  163 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-----------------CEEEEEECTTTCSSEEEEE
T ss_pred             cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-----------------ceeecccccccccccceee
Confidence                  0000112234455566666555443 345555555432                 2334443222223377888


Q ss_pred             EecCCCCEEEEeccCceEEEEeccCCeeEEEee--cCccceEEEEEcCCCCeEEEEeC-CCcEEEccCCCCCCCCCCCC-
Q 021484          155 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV--GDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPMPTDFPPLPDN-  230 (312)
Q Consensus       155 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~-  230 (312)
                      + .++++.+++....+.|++||.. ++.+..+.  +.......+++.|+|+++++-.. ++.|.+|+.....+.++... 
T Consensus       164 ~-d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~  241 (279)
T d1q7fa_         164 V-NDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKV  241 (279)
T ss_dssp             E-CSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESS
T ss_pred             e-ccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCC
Confidence            8 8899999998999999999975 67676663  33456789999999998777553 45799999654322222110 


Q ss_pred             -hhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484          231 -AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       231 -~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                       .... ......+++.++++ ..+..|++|+.+..
T Consensus       242 ~~~~p-~~vav~~dG~l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         242 KHAQC-FDVALMDDGSVVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             CCSCE-EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCCCE-eEEEEeCCCcEEEE-eCCCeEEEEEeeee
Confidence             0111 11223455555544 45777888875543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.65  E-value=8.8e-06  Score=64.60  Aligned_cols=197  Identities=11%  Similarity=0.045  Sum_probs=114.6

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCC-CccEEEEEEccCCCeEEEecC---
Q 021484           33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN-NIHITGLAYSNTSELLISYND---  108 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~d---  108 (312)
                      -..++|++++ ++++++...+.|...+..........           ... .+. -.....+++.++|.+.++...   
T Consensus        73 P~Gl~~~~dg-~~l~vad~~~~i~~~~~~g~~~~~~~-----------~~~-~g~~~~~pndl~~d~~G~lyvtd~~~~~  139 (314)
T d1pjxa_          73 PAGCQCDRDA-NQLFVADMRLGLLVVQTDGTFEEIAK-----------KDS-EGRRMQGCNDCAFDYEGNLWITAPAGEV  139 (314)
T ss_dssp             EEEEEECSSS-SEEEEEETTTEEEEEETTSCEEECCS-----------BCT-TSCBCBCCCEEEECTTSCEEEEECBCBC
T ss_pred             ceeEEEeCCC-CEEEEEECCCeEEEEeCCCcEEEEEe-----------ccc-cccccCCCcEEEECCCCCEEEecCccCc
Confidence            5679999998 66666666677888887755421100           000 111 123567899999997776321   


Q ss_pred             -------------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCC-----EEEEeccCc
Q 021484          109 -------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-----YVMSGSDCG  170 (312)
Q Consensus       109 -------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~-----~l~~~~~dg  170 (312)
                                   +.|+.++...                 +..... .....  ...++| ++++.     +.++-+..+
T Consensus       140 ~~~~~~~~~~~~~G~v~~~~~dg-----------------~~~~~~-~~~~~--pNGi~~-~~d~d~~~~~lyv~d~~~~  198 (314)
T d1pjxa_         140 APADYTRSMQEKFGSIYCFTTDG-----------------QMIQVD-TAFQF--PNGIAV-RHMNDGRPYQLIVAETPTK  198 (314)
T ss_dssp             TTSCCCBTTSSSCEEEEEECTTS-----------------CEEEEE-EEESS--EEEEEE-EECTTSCEEEEEEEETTTT
T ss_pred             ccccccceeccCCceEEEEeecC-----------------ceeEee-CCcce--eeeeEE-CCCCCcceeEEEEEeeccc
Confidence                         2233333221                 122222 22221  467888 66654     445567788


Q ss_pred             eEEEEeccCCeeEE------Eeec-CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC-CCCChhhhhhhhccCC
Q 021484          171 HLFIWKKKGGKLVR------LMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-LPDNAEKIMKANKQGR  242 (312)
Q Consensus       171 ~v~iwd~~~~~~~~------~~~~-~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~  242 (312)
                      .|..|++.....+.      .+.. +......+++.++|++.++....+.|.+||..++.... +....... ....+.+
T Consensus       199 ~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~-t~~afg~  277 (314)
T d1pjxa_         199 KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKP-SNLHFKP  277 (314)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCE-EEEEECT
T ss_pred             ceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCE-EEEEEeC
Confidence            99999875432221      2221 22345689999999998888788999999998776432 22112222 2333455


Q ss_pred             CCc-eeEEecCCceEEEEEeccc
Q 021484          243 EDH-SRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       243 ~~~-~l~s~~~d~~i~i~~~~~~  264 (312)
                      +.+ +.++.+.++.|...++...
T Consensus       278 d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         278 QTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCEEEEEECCCCcEEEEECCCC
Confidence            553 5677777777776665544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.64  E-value=6.6e-06  Score=64.18  Aligned_cols=158  Identities=13%  Similarity=0.155  Sum_probs=106.0

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE  109 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~  109 (312)
                      .....+++.+++ +++++....+.+.+++.....          +..+.    ...+......+++.+++.++++. ..+
T Consensus       114 ~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~g~~----------~~~~g----~~~~~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         114 QHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGNV----------LHKFG----CSKHLEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             SCEEEEEECTTS-CEEEEETTTTEEEEECTTSCE----------EEEEE----CTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             cccceeccccCC-cEEEEeeccceeeEeccCCce----------eeccc----ccccccccceeeeccceeEEeeecccc
Confidence            345677777777 566666666777777654321          11111    12345667889999999877775 588


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEeccCCeeEEEeec
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVG  188 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~  188 (312)
                      .|++||....                 .+..+...........+++ +++|+++++-.. ++.|.+|+. +|+.+..+..
T Consensus       179 ~V~~~d~~G~-----------------~~~~~g~~g~~~~P~giav-D~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~  239 (279)
T d1q7fa_         179 CVKVFNYEGQ-----------------YLRQIGGEGITNYPIGVGI-NSNGEILIADNHNNFNLTIFTQ-DGQLISALES  239 (279)
T ss_dssp             EEEEEETTCC-----------------EEEEESCTTTSCSEEEEEE-CTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE
T ss_pred             ceeeeecCCc-----------------eeeeecccccccCCccccc-ccCCeEEEEECCCCcEEEEECC-CCCEEEEEeC
Confidence            9999997643                 4444422111123788998 999997777543 557999985 5887777753


Q ss_pred             C--ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484          189 D--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  223 (312)
Q Consensus       189 ~--~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  223 (312)
                      .  ......+++.|+|.++++ +.+..|++|......
T Consensus       240 ~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         240 KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  275 (279)
T ss_dssp             SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeeec
Confidence            3  235789999999976554 578999999977653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.4e-06  Score=73.27  Aligned_cols=97  Identities=14%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEE---------eCCCeEEEEEccCCeecCCCCC
Q 021484            1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG---------GSDEYARVYDIRKCHWYSPISS   71 (312)
Q Consensus         1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~   71 (312)
                      |.+||+.+++...++....+.        ...+....|||++ +.++..         +..+.+.+||+.++.....   
T Consensus        39 i~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~SpD~-~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l---  106 (465)
T d1xfda1          39 VRLWNVETNTSTVLIEGKKIE--------SLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL---  106 (465)
T ss_dssp             EEEBCGGGCCCEEEECTTTTT--------TTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC---
T ss_pred             EEEEECCCCCEEEEEcCcccc--------ccccceeEECCCC-CeEEEEEcccceeEeeccccEEEEEccCCceeec---
Confidence            357788777655555443322        3357788999999 555554         3357889999988763211   


Q ss_pred             CCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021484           72 DTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG  119 (312)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~  119 (312)
                                .........+....|||+|+.+|-..++.|++.+..++
T Consensus       107 ----------~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~  144 (465)
T d1xfda1         107 ----------DPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGK  144 (465)
T ss_dssp             ----------CCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSS
T ss_pred             ----------cCccCCccccceeeeccCCceEEEEecceEEEEecCCC
Confidence                      00012233455678999999998888899999888665

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.54  E-value=7.3e-06  Score=65.26  Aligned_cols=195  Identities=9%  Similarity=0.113  Sum_probs=116.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC--
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND--  108 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d--  108 (312)
                      .+..++|++++ +++++-...+.|..|+..+++..              ... .........++++++|+++++. .+  
T Consensus        41 ~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~~--------------~~~-~~~~~~p~gla~~~dG~l~va~~~~~~  104 (319)
T d2dg1a1          41 QLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIK--------------RPF-VSHKANPAAIKIHKDGRLFVCYLGDFK  104 (319)
T ss_dssp             CEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE--------------EEE-ECSSSSEEEEEECTTSCEEEEECTTSS
T ss_pred             CcEeCEECCCC-CEEEEECCCCEEEEEECCCCeEE--------------EEE-eCCCCCeeEEEECCCCCEEEEecCCCc
Confidence            45789999998 78888778899998988765421              111 2234467899999999977764 22  


Q ss_pred             --CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc------CceEEEEeccCC
Q 021484          109 --ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKKKGG  180 (312)
Q Consensus       109 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~------dg~v~iwd~~~~  180 (312)
                        +.+...+....                .................+++ .++|++.++...      .+.+..++... 
T Consensus       105 ~~~~i~~~~~~~~----------------~~~~~~~~~~~~~~~nd~~~-d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-  166 (319)
T d2dg1a1         105 STGGIFAATENGD----------------NLQDIIEDLSTAYCIDDMVF-DSKGGFYFTDFRGYSTNPLGGVYYVSPDF-  166 (319)
T ss_dssp             SCCEEEEECTTSC----------------SCEEEECSSSSCCCEEEEEE-CTTSCEEEEECCCBTTBCCEEEEEECTTS-
T ss_pred             cceeEEEEcCCCc----------------eeeeeccCCCcccCCcceeE-EeccceeecccccccccCcceeEEEeccc-
Confidence              23444444433                22222221121223678888 899987776432      23466666553 


Q ss_pred             eeEEEeecCccceEEEEEcCCCCeE-EEEeCCCcEEEccCCCCCCC--CCCC------ChhhhhhhhccCCCCceeEEec
Q 021484          181 KLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFP--PLPD------NAEKIMKANKQGREDHSRITLT  251 (312)
Q Consensus       181 ~~~~~~~~~~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~l~s~~  251 (312)
                      +.+..+...-...+.++|+|+++.| ++-+..+.|..|++......  ....      .......-.....++++.++..
T Consensus       167 ~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~  246 (319)
T d2dg1a1         167 RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY  246 (319)
T ss_dssp             CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE
T ss_pred             ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc
Confidence            3333333233456789999999865 55557789999987643210  0000      0000011123445677888888


Q ss_pred             CCceEEEEE
Q 021484          252 PDVIMHVLR  260 (312)
Q Consensus       252 ~d~~i~i~~  260 (312)
                      .++.|.+++
T Consensus       247 ~~g~V~~~~  255 (319)
T d2dg1a1         247 GQGRVLVFN  255 (319)
T ss_dssp             TTTEEEEEC
T ss_pred             CCCEEEEEC
Confidence            888888887

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.47  E-value=2.1e-05  Score=63.79  Aligned_cols=162  Identities=10%  Similarity=0.045  Sum_probs=93.4

Q ss_pred             CccEEEEEEccCCCeEEEec--CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021484           88 NIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  165 (312)
Q Consensus        88 ~~~i~~~~~~~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~  165 (312)
                      ...+.+++|+|+|+++++..  ...|.+|+......             ..................++| +|+++++++
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~-------------~~~~~~~~~~~~g~gPr~i~f-~pdg~~~yv  209 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE-------------VELVGSVDAPDPGDHPRWVAM-HPTGNYLYA  209 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-------------EEEEEEEECSSTTCCEEEEEE-CTTSSEEEE
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCc-------------eeeccceeecCCCCceEEEEE-CCCCceEEE
Confidence            34578999999999777753  66788887654310             001111111111123789999 999998855


Q ss_pred             -eccCceEEEEeccCCeeE--EE---ee--------------cCccceEEEEEcCCCCeEEEEeC-C-----CcEEEccC
Q 021484          166 -GSDCGHLFIWKKKGGKLV--RL---MV--------------GDRHVVNQLEPHPHIPMFATCGI-E-----KTVKLWAP  219 (312)
Q Consensus       166 -~~~dg~v~iwd~~~~~~~--~~---~~--------------~~~~~v~~~~~~p~~~~l~t~~~-d-----~~i~iwd~  219 (312)
                       ...+++|.+|++..++..  ..   +.              .+......+.++|+|++|+++.. +     ..|..|++
T Consensus       210 ~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~  289 (365)
T d1jofa_         210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             eccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEe
Confidence             456889999998765422  11   11              01123567899999999777642 2     23777766


Q ss_pred             CCCC-CC------CCCCChhhhhhhhccCC-CCcee-EEecCCceEEEEEeccc
Q 021484          220 MPTD-FP------PLPDNAEKIMKANKQGR-EDHSR-ITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       220 ~~~~-~~------~~~~~~~~~~~~~~~~~-~~~~l-~s~~~d~~i~i~~~~~~  264 (312)
                      .... +.      ........... ..+.+ ++++| ++...++.|.+|+++..
T Consensus       290 ~~~g~~~~~~~~~~~~~~G~~p~~-i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         290 RDCGSIEKQLFLSPTPTSGGHSNA-VSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTSCEEEEEEEEECSSCCTTCCC-EEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cCCCceeeEeEeeEEEcCCCCccE-EEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            5421 10      00001111111 12344 55655 55567799999987654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.44  E-value=9.6e-06  Score=64.00  Aligned_cols=154  Identities=11%  Similarity=0.125  Sum_probs=100.5

Q ss_pred             cEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc
Q 021484           90 HITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD  168 (312)
Q Consensus        90 ~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~  168 (312)
                      .+..++++|+|+++++. .+++|+.|+....                  ...+.....  .+.+++| +++|+++++...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~------------------~~~~~~~~~--~~~gla~-~~dG~l~v~~~~   87 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN------------------QQIHATVEG--KVSGLAF-TSNGDLVATGWN   87 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC------------------EEEEEECSS--EEEEEEE-CTTSCEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC------------------EEEEEcCCC--CcceEEE-cCCCCeEEEecC
Confidence            57789999999998886 5898988886542                  233333443  3899999 999999998888


Q ss_pred             CceEEEEeccCCee-EEEee--cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCC--------CChhhhhhh
Q 021484          169 CGHLFIWKKKGGKL-VRLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP--------DNAEKIMKA  237 (312)
Q Consensus       169 dg~v~iwd~~~~~~-~~~~~--~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~--------~~~~~~~~~  237 (312)
                      ++.+..++...... ...+.  ......+.+++.++++++++.+.++.+..++...+......        .........
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (302)
T d2p4oa1          88 ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  167 (302)
T ss_dssp             TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             CceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccc
Confidence            88888888654321 12221  23456789999999999998888888888887765311100        000000001


Q ss_pred             hccC-CCCceeEEecCCceEEEEEeccc
Q 021484          238 NKQG-REDHSRITLTPDVIMHVLRLQRR  264 (312)
Q Consensus       238 ~~~~-~~~~~l~s~~~d~~i~i~~~~~~  264 (312)
                      +... ....++++.+..+.+..+++...
T Consensus       168 ngi~~~~~~l~~~~~~~~~i~~~~~~~~  195 (302)
T d2p4oa1         168 NGLKRFGNFLYVSNTEKMLLLRIPVDST  195 (302)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEEBCTT
T ss_pred             ccccccCCceeeecCCCCeEEecccccc
Confidence            1111 13456677777888777776543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=2.6e-05  Score=59.98  Aligned_cols=164  Identities=13%  Similarity=0.090  Sum_probs=93.9

Q ss_pred             CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE-EEe-
Q 021484           29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-ISY-  106 (312)
Q Consensus        29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~-  106 (312)
                      +........|+|++..++.....++...++......              .................+++++..+ ++. 
T Consensus        81 ~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (269)
T d2hqsa1          81 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS--------------GQIRQVTDGRSNNTEPTWFPDSQNLAFTSD  146 (269)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--------------CCEEECCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred             eecccccceecCCCCeeeEeeecCCccceeeccccc--------------ccceeeeeccccccccccccccccceeccc
Confidence            456778899999995444444445554444433222              0011112233445566778887733 333 


Q ss_pred             cCCc--EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc---eEEEEeccCCe
Q 021484          107 NDEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGK  181 (312)
Q Consensus       107 ~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg---~v~iwd~~~~~  181 (312)
                      .++.  |.+.++...                 .........  .......| +|+++.++..+.++   .+.+.+...+.
T Consensus       147 ~~g~~~i~~~~~~~~-----------------~~~~~~~~~--~~~~~~~~-spdg~~~~~~~~~~~~~~i~~~~~~~~~  206 (269)
T d2hqsa1         147 QAGRPQVYKVNINGG-----------------APQRITWEG--SQNQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATGG  206 (269)
T ss_dssp             TTSSCEEEEEETTSS-----------------CCEECCCSS--SEEEEEEE-CTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred             ccCCceEeeeecccc-----------------cceeeeccc--cccccccc-ccccceeEEEeecCCceeeeEeeccccc
Confidence            3554  555555543                 222222233  23667778 89999887765543   34445555443


Q ss_pred             eEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEccCCCCCCCCCC
Q 021484          182 LVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPLP  228 (312)
Q Consensus       182 ~~~~~~~~~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~~~~~~  228 (312)
                      .  .+..+........|+|+|+.|+..+.   ...|.++++.++....+.
T Consensus       207 ~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt  254 (269)
T d2hqsa1         207 V--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  254 (269)
T ss_dssp             E--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred             c--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEe
Confidence            2  33334556678899999999775553   346888998887654444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.24  E-value=2.9e-05  Score=61.54  Aligned_cols=119  Identities=12%  Similarity=0.199  Sum_probs=79.7

Q ss_pred             cEEEEEEccCCC-----eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE
Q 021484           90 HITGLAYSNTSE-----LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  163 (312)
Q Consensus        90 ~i~~~~~~~~~~-----~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l  163 (312)
                      ....++|+|++.     ++++- ..+.|+.|++.....          +...+....+.+... ...-.+++ +.+|++.
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~----------~~~~~~~~~~~~~~~-~~pdGiav-D~~Gnly  240 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK----------IENKKVWGHIPGTHE-GGADGMDF-DEDNNLL  240 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE----------EEEEEEEEECCCCSS-CEEEEEEE-BTTCCEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccc----------cceeeEEEEcccccc-ccceeeEE-ecCCcEE
Confidence            346789998764     33443 488899998754300          000000011111111 12457888 8999988


Q ss_pred             EEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCC
Q 021484          164 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPM  220 (312)
Q Consensus       164 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~  220 (312)
                      ++....+.|.+||...++.+..+......+++++|.|+++. ++|.+.++.|.-.++.
T Consensus       241 Va~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         241 VANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            88878899999999888877777766677899999999875 6677778888887754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.23  E-value=0.00048  Score=54.35  Aligned_cols=161  Identities=6%  Similarity=0.007  Sum_probs=96.1

Q ss_pred             ccceEEEEEcCCCCcEEEEEeC----CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGS----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS  105 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  105 (312)
                      ......+++++++ +++++...    .+.+...+.......          ... ..  ..-......+++.++|.+.++
T Consensus        81 ~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~~~~----------~~~-~~--~~~~~~~nd~~~d~~G~l~vt  146 (319)
T d2dg1a1          81 KANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQ----------DII-ED--LSTAYCIDDMVFDSKGGFYFT  146 (319)
T ss_dssp             SSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCE----------EEE-CS--SSSCCCEEEEEECTTSCEEEE
T ss_pred             CCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCceee----------eec-cC--CCcccCCcceeEEeccceeec
Confidence            3456789999998 67666533    233444444443311          000 00  111334678999999997777


Q ss_pred             ecC-------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE-EEeccCceEEEEec
Q 021484          106 YND-------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKK  177 (312)
Q Consensus       106 ~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l-~~~~~dg~v~iwd~  177 (312)
                      ...       +.++.++....                 .+..+......  ...++| +++++.| ++-+..+.|+.|++
T Consensus       147 d~~~~~~~~~g~v~~~~~dg~-----------------~~~~~~~~~~~--pnGia~-s~dg~~lyvad~~~~~I~~~d~  206 (319)
T d2dg1a1         147 DFRGYSTNPLGGVYYVSPDFR-----------------TVTPIIQNISV--ANGIAL-STDEKVLWVTETTANRLHRIAL  206 (319)
T ss_dssp             ECCCBTTBCCEEEEEECTTSC-----------------CEEEEEEEESS--EEEEEE-CTTSSEEEEEEGGGTEEEEEEE
T ss_pred             ccccccccCcceeEEEecccc-----------------eeEEEeeccce--eeeeee-ccccceEEEecccCCceEEEEE
Confidence            421       22444444332                 33333222222  678999 9999866 55567889999987


Q ss_pred             cCC-eeEEE-------eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          178 KGG-KLVRL-------MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       178 ~~~-~~~~~-------~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      ... .....       ..........+++.++|++.++....+.|.+|+.....+
T Consensus       207 ~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l  261 (319)
T d2dg1a1         207 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPI  261 (319)
T ss_dssp             CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEE
T ss_pred             cCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEE
Confidence            532 11111       111123456899999999988888899999999865433

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.19  E-value=0.00022  Score=55.75  Aligned_cols=189  Identities=12%  Similarity=0.008  Sum_probs=117.7

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEE
Q 021484           34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYL  113 (312)
Q Consensus        34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~i  113 (312)
                      -+..|++.++.++.+--..+.|.-||..+++..             .    ......+.++++.++|.+++++.+ .+.+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-------------~----~~~~~~~~~i~~~~dg~l~va~~~-gl~~   82 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-------------V----HALPFMGSALAKISDSKQLIASDD-GLFL   82 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-------------E----EECSSCEEEEEEEETTEEEEEETT-EEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-------------E----EECCCCcEEEEEecCCCEEEEEeC-ccEE
Confidence            356788866467666667889999999887621             1    111346788999999988877654 5889


Q ss_pred             EEcCCCcCCCCCcCCcccccCCCCCceEec---ccCCceeeEEEEecCCCCEEEEecc----CceEEEEeccCCeeEEEe
Q 021484          114 FEKNMGLGPSPLSLSPEDLQKREEPQVYSG---HRNSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~s~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~  186 (312)
                      +|..++                +. ..+..   ......+..+.+ .++|++.++...    .+.-.+|.+..++.....
T Consensus        83 ~d~~tg----------------~~-~~l~~~~~~~~~~~~nd~~v-d~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~  144 (295)
T d2ghsa1          83 RDTATG----------------VL-TLHAELESDLPGNRSNDGRM-HPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF  144 (295)
T ss_dssp             EETTTC----------------CE-EEEECSSTTCTTEEEEEEEE-CTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE
T ss_pred             eecccc----------------ee-eEEeeeecCCCcccceeeEE-CCCCCEEEEeccccccccceeEeeecCCcEEEEe
Confidence            998876                22 22221   111123778888 899997776432    234556766677655444


Q ss_pred             ecCccceEEEEEcCCCCeE-EEEeCCCcEEEccCCCCCCCC---------CCCChhhhhhhhccCCCCceeEEecCCceE
Q 021484          187 VGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPP---------LPDNAEKIMKANKQGREDHSRITLTPDVIM  256 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  256 (312)
                      .. -...+.++|+|+++.+ ++-+..+.|..|++.......         ..+. .....-.....++++.++.-..+.|
T Consensus       145 ~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~-~g~pdG~~vD~~GnlWva~~~~g~V  222 (295)
T d2ghsa1         145 AD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDAEGHIWNARWGEGAV  222 (295)
T ss_dssp             EE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECTTSCEEEEEETTTEE
T ss_pred             ec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcc-cccccceEEcCCCCEEeeeeCCCce
Confidence            33 2355789999999875 455567889888865432110         0111 1111222345567777776667777


Q ss_pred             EEEE
Q 021484          257 HVLR  260 (312)
Q Consensus       257 ~i~~  260 (312)
                      ..++
T Consensus       223 ~~~d  226 (295)
T d2ghsa1         223 DRYD  226 (295)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            7777

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.18  E-value=0.00029  Score=54.97  Aligned_cols=161  Identities=9%  Similarity=-0.011  Sum_probs=102.7

Q ss_pred             ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec--
Q 021484           30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--  107 (312)
Q Consensus        30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--  107 (312)
                      +..+.++++.+++ .++++ +.+ .+..+|..+++....          ... ........+..+.+.|+|.+.++..  
T Consensus        58 ~~~~~~i~~~~dg-~l~va-~~~-gl~~~d~~tg~~~~l----------~~~-~~~~~~~~~nd~~vd~~G~iw~~~~~~  123 (295)
T d2ghsa1          58 PFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGVLTLH----------AEL-ESDLPGNRSNDGRMHPSGALWIGTMGR  123 (295)
T ss_dssp             SSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCEEEE----------ECS-STTCTTEEEEEEEECTTSCEEEEEEET
T ss_pred             CCCcEEEEEecCC-CEEEE-EeC-ccEEeecccceeeEE----------eee-ecCCCcccceeeEECCCCCEEEEeccc
Confidence            4467889998887 56554 444 588899988763211          000 0011234578899999999777642  


Q ss_pred             ---CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE-EEeccCceEEEEeccC----
Q 021484          108 ---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKG----  179 (312)
Q Consensus       108 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l-~~~~~dg~v~iwd~~~----  179 (312)
                         .+.-.+|.+..+                +......... .  ...++| +++++.+ ++-+..+.|..+++..    
T Consensus       124 ~~~~~~g~l~~~~~g----------------~~~~~~~~~~-~--~Ng~~~-s~d~~~l~~~dt~~~~I~~~~~d~~~~~  183 (295)
T d2ghsa1         124 KAETGAGSIYHVAKG----------------KVTKLFADIS-I--PNSICF-SPDGTTGYFVDTKVNRLMRVPLDARTGL  183 (295)
T ss_dssp             TCCTTCEEEEEEETT----------------EEEEEEEEES-S--EEEEEE-CTTSCEEEEEETTTCEEEEEEBCTTTCC
T ss_pred             cccccceeEeeecCC----------------cEEEEeeccC-C--cceeee-cCCCceEEEeecccceeeEeeecccccc
Confidence               234566666554                3333333322 2  578888 8888755 5666788999988642    


Q ss_pred             --Cee--EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          180 --GKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       180 --~~~--~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                        ++.  ...+.+..+....+++..+|++.++.-..+.|..||..+..+
T Consensus       184 ~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~  232 (295)
T d2ghsa1         184 PTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHI  232 (295)
T ss_dssp             BSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEE
T ss_pred             cccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEe
Confidence              111  122223345678899999999887777788999999876544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=9.8e-06  Score=68.03  Aligned_cols=141  Identities=9%  Similarity=0.072  Sum_probs=88.3

Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec--------
Q 021484           36 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--------  107 (312)
Q Consensus        36 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--------  107 (312)
                      ..|.+++ .++. -..+|.|.+||+.+++....         +...   .-....+....||||+++++...        
T Consensus        22 ~~W~~~~-~~~~-~~~~g~i~~~~~~~~~~~~l---------~~~~---~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~   87 (465)
T d1xfda1          22 AKWISDT-EFIY-REQKGTVRLWNVETNTSTVL---------IEGK---KIESLRAIRYEISPDREYALFSYNVEPIYQH   87 (465)
T ss_dssp             CCBSSSS-CBCC-CCSSSCEEEBCGGGCCCEEE---------ECTT---TTTTTTCSEEEECTTSSEEEEEESCCCCSSS
T ss_pred             CEEeCCC-cEEE-EeCCCcEEEEECCCCCEEEE---------EcCc---cccccccceeEECCCCCeEEEEEcccceeEe
Confidence            4688877 4543 45678999999987752100         0000   11123456778999999665542        


Q ss_pred             --CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484          108 --DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  184 (312)
Q Consensus       108 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  184 (312)
                        .+.+.++|+.++                .. ..+. .......+....| +|+|+.||-.. ++.|++.+..+++.++
T Consensus        88 s~~~~~~i~d~~~~----------------~~-~~l~~~~~~~~~l~~~~w-SPDG~~iafv~-~~nl~~~~~~~~~~~~  148 (465)
T d1xfda1          88 SYTGYYVLSKIPHG----------------DP-QSLDPPEVSNAKLQYAGW-GPKGQQLIFIF-ENNIYYCAHVGKQAIR  148 (465)
T ss_dssp             CCCSEEEEEESSSC----------------CC-EECCCTTCCSCCCSBCCB-CSSTTCEEEEE-TTEEEEESSSSSCCEE
T ss_pred             eccccEEEEEccCC----------------ce-eeccCccCCccccceeee-ccCCceEEEEe-cceEEEEecCCCceEE
Confidence              356889999876                22 2222 1111122556778 99999998764 6789998887776654


Q ss_pred             EeecC-ccce-----------------EEEEEcCCCCeEEEEe
Q 021484          185 LMVGD-RHVV-----------------NQLEPHPHIPMFATCG  209 (312)
Q Consensus       185 ~~~~~-~~~v-----------------~~~~~~p~~~~l~t~~  209 (312)
                      ..... ...|                 ..+-|||+|+.||...
T Consensus       149 lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             EecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            44321 1111                 4677999999988775

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.03  E-value=0.00027  Score=54.19  Aligned_cols=56  Identities=7%  Similarity=0.025  Sum_probs=36.6

Q ss_pred             CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC
Q 021484          169 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL  227 (312)
Q Consensus       169 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~  227 (312)
                      ...|+++|+.+++.. .+..+. ......|+|+|+.|+.. .++.|.++|+.+++...+
T Consensus       213 ~~~l~~~d~~g~~~~-~lt~~~-~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         213 FGQIYSTDLDGKDLR-KHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             SCEEEEEETTSCSCE-ECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred             ccceEEEeCCCCceE-EeecCC-CcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence            345777788765543 343222 22234689999997764 468899999998875443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.63  E-value=0.00051  Score=52.59  Aligned_cols=94  Identities=11%  Similarity=0.194  Sum_probs=65.6

Q ss_pred             EEccC--CCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-C--
Q 021484           95 AYSNT--SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--  169 (312)
Q Consensus        95 ~~~~~--~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-d--  169 (312)
                      ..+|+  |+.++-..++.|++.|+.++                 ..+.+..+...  ....+| +|+|+.|+.... +  
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g-----------------~~~~Lt~~~~~--~~~p~~-SPDG~~iaf~~~~~~~   64 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSG-----------------STRKIVSNLGV--INNARF-FPDGRKIAIRVMRGSS   64 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTC-----------------CEEEEECSSSE--EEEEEE-CTTSSEEEEEEEESTT
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCC-----------------CEEEEecCCCc--ccCEEE-CCCCCEEEEEEeeCCC
Confidence            45788  98888777888999999886                 34455555543  788899 999999885432 1  


Q ss_pred             ---ceEEEEeccCCeeEEEee------cCccceEEEEEcCCCCeEEEE
Q 021484          170 ---GHLFIWKKKGGKLVRLMV------GDRHVVNQLEPHPHIPMFATC  208 (312)
Q Consensus       170 ---g~v~iwd~~~~~~~~~~~------~~~~~v~~~~~~p~~~~l~t~  208 (312)
                         ..|.+++..+++......      ..........|+|+++.++..
T Consensus        65 ~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          65 LNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             CCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence               257888888777653221      112245678899999987764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=0.015  Score=44.08  Aligned_cols=158  Identities=9%  Similarity=0.019  Sum_probs=97.2

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE-Ee-cC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-SY-ND  108 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d  108 (312)
                      ..+.+++|++.+..++.+-..++.|+..++....               ...+.......+..+++..-+..|. +- ..
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~---------------~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~  100 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---------------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQL  100 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---------------CEEEECTTCCCEEEEEEETTTTEEEEEETTT
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC---------------cEEEEEeccccccEEEEeccCCeEEEeccCC
Confidence            3577899998775566666677889888887553               1111122234678899987665444 43 57


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEec-c--CceEEEEeccCCeeEE
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGS-D--CGHLFIWKKKGGKLVR  184 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~-~--dg~v~iwd~~~~~~~~  184 (312)
                      +.|.+.++...                 ....+. ....  .+..++. +|...+++-.. .  .+.|.--++.......
T Consensus       101 ~~I~~~~~dg~-----------------~~~~l~~~~l~--~p~~l~v-dp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~  160 (263)
T d1npea_         101 DRIEVAKMDGT-----------------QRRVLFDTGLV--NPRGIVT-DPVRGNLYWTDWNRDNPKIETSHMDGTNRRI  160 (263)
T ss_dssp             TEEEEEETTSC-----------------SCEEEECSSCS--SEEEEEE-ETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred             CEEEEEecCCc-----------------eEEEEeccccc--CCcEEEE-ecccCcEEEeecCCCCcEEEEecCCCCCcee
Confidence            89999998764                 222332 2222  2788888 67666665332 2  2345555665433333


Q ss_pred             EeecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCCCC
Q 021484          185 LMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTD  223 (312)
Q Consensus       185 ~~~~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~  223 (312)
                      .....-.....+++.+.++.|.-+ ...+.|...++.+..
T Consensus       161 i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~  200 (263)
T d1npea_         161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (263)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             eeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC
Confidence            333333566899998887776544 467789888887654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=0.027  Score=42.51  Aligned_cols=188  Identities=11%  Similarity=-0.011  Sum_probs=99.7

Q ss_pred             CCccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE-
Q 021484           87 NNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-  163 (312)
Q Consensus        87 ~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l-  163 (312)
                      +...+..++|.+..+.+.-+  ..+.|+..++...                .....+......  +.++++ +.-+..| 
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~----------------~~~~v~~~~~~~--p~~iAv-D~~~~~lY   94 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG----------------EPTTIIRQDLGS--PEGIAL-DHLGRTIF   94 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC----------------CCEEEECTTCCC--EEEEEE-ETTTTEEE
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccC----------------CcEEEEEecccc--ccEEEE-eccCCeEE
Confidence            34457789999877755443  4788999888764                232223222222  788888 6545555 


Q ss_pred             EEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC-CcEEEc--cCCCCCCCCCCC-Chhhhhhhhc
Q 021484          164 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-KTVKLW--APMPTDFPPLPD-NAEKIMKANK  239 (312)
Q Consensus       164 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d-~~i~iw--d~~~~~~~~~~~-~~~~~~~~~~  239 (312)
                      .+-...+.|.+.++........+......+..++.+|...++.-.... +.-+|+  ++.+.....+.. ..... ....
T Consensus        95 ~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P-~gla  173 (263)
T d1npea_          95 WTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLP-NGLT  173 (263)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCE-EEEE
T ss_pred             EeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeeccccc-ceEE
Confidence            465677899999987554433333334678899999988776544322 233344  454443222111 10111 1111


Q ss_pred             cCC-CCceeEEecCCceEEEEEecccCccceeEeecCCCccCCCCCCCeEEEeecCCC
Q 021484          240 QGR-EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDS  296 (312)
Q Consensus       240 ~~~-~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  296 (312)
                      ... ++.+..+-...+.|...++............+....++..  ++.+|..|...+
T Consensus       174 iD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~  229 (263)
T d1npea_         174 FDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTN  229 (263)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTT
T ss_pred             EeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCC
Confidence            222 3344455566677777776544322222111112234333  345777665433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.90  E-value=0.01  Score=47.71  Aligned_cols=192  Identities=10%  Similarity=0.058  Sum_probs=103.5

Q ss_pred             EEEEcC---CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--CeEEEecC-
Q 021484           35 AIVIDP---RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISYND-  108 (312)
Q Consensus        35 ~~~~~p---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~d-  108 (312)
                      .+++..   +|..+++.-..+.+|.+-|+++.++..              .+.......+..+...+++  .+++.... 
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~k--------------Ii~iPn~~~~HG~r~~~~p~T~YV~~~~e~  154 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDA--------------ILEIPNAKGIHGLRPQKWPRSNYVFCNGED  154 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEE--------------EEECSSCCSEEEEEECCSSBCSEEEEEECS
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeE--------------EEecCCCCCCceeecccCCCeEEEEccCcc
Confidence            455543   673445555678999999999887321              1112223455666665544  36555332 


Q ss_pred             ------------------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc
Q 021484          109 ------------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG  170 (312)
Q Consensus       109 ------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg  170 (312)
                                        +.+.++|..+.                +.........   ....+.+ +++|+++++.+.+.
T Consensus       155 ~vP~pndg~~l~d~~~y~~~~t~ID~~tm----------------~V~~QV~V~g---~ld~~~~-s~dGK~af~TsyNS  214 (459)
T d1fwxa2         155 ETPLVNDGTNMEDVANYVNVFTAVDADKW----------------EVAWQVLVSG---NLDNCDA-DYEGKWAFSTSYNS  214 (459)
T ss_dssp             CEESSCSSSSTTCGG-EEEEEEEEETTTT----------------EEEEEEEESS---CCCCEEE-CSSSSEEEEEESCT
T ss_pred             ccccCCCCccccchhhcceEEEEEecCCc----------------eEEEEeeeCC---Chhcccc-CCCCCEEEEEeccc
Confidence                              12456666554                3333333222   2567888 89999988765321


Q ss_pred             ---------------eEEEEec-----------------------cC--C-eeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021484          171 ---------------HLFIWKK-----------------------KG--G-KLVRLMVGDRHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       171 ---------------~v~iwd~-----------------------~~--~-~~~~~~~~~~~~v~~~~~~p~~~~l~t~~  209 (312)
                                     .+.++++                       +.  + ..+..+... .....+..+|+|+++++++
T Consensus       215 E~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaG  293 (459)
T d1fwxa2         215 EKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAG  293 (459)
T ss_dssp             TCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEEC
T ss_pred             cCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeC
Confidence                           1333332                       21  0 111222211 2345789999999966555


Q ss_pred             -CCCcEEEccCCCCCC---CCCCCChhhh-----hhhh----ccCCCCceeEEecCCceEEEEEec
Q 021484          210 -IEKTVKLWAPMPTDF---PPLPDNAEKI-----MKAN----KQGREDHSRITLTPDVIMHVLRLQ  262 (312)
Q Consensus       210 -~d~~i~iwd~~~~~~---~~~~~~~~~~-----~~~~----~~~~~~~~l~s~~~d~~i~i~~~~  262 (312)
                       .+.++.|+|++.-..   ... .....+     +.+.    .+...+.-..|.--|+.+.-|++.
T Consensus       294 KLs~tVSViD~~Ki~~~~~~~~-~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         294 KLSPTVTVLDVTRFDAVFYENA-DPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             TTSSBEEEEEGGGHHHHHHSCC--GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             CcCCcEEEEEehhhhhhhcccC-CccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence             789999999864210   000 000000     0111    122234556667788999999975

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.063  Score=40.48  Aligned_cols=163  Identities=8%  Similarity=-0.012  Sum_probs=95.2

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE-EEe-cC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-ISY-ND  108 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~-~d  108 (312)
                      ..+.++.|++.+..++.+-...+.|+-.++.......           ....+.......+..+++.+.+..| .+- ..
T Consensus        30 ~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~-----------~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~   98 (266)
T d1ijqa1          30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-----------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL   98 (266)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTT
T ss_pred             CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCc-----------ceEEEEeCCCCCcceEEEeeccceEEEEecCC
Confidence            3567899998774555555567777766665322100           0111112223456678888766533 343 47


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe--ccCceEEEEeccCCeeEEEe
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG--SDCGHLFIWKKKGGKLVRLM  186 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~  186 (312)
                      +.|.+.++...                .....+......  ...++. +|...+|+..  +..+.|.-.++.........
T Consensus        99 ~~I~v~~~~g~----------------~~~~~~~~~~~~--P~~l~v-d~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~  159 (266)
T d1ijqa1          99 GTVSVADTKGV----------------KRKTLFRENGSK--PRAIVV-DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  159 (266)
T ss_dssp             TEEEEEETTSS----------------SEEEEEECTTCC--EEEEEE-ETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             CEEEeEecCCc----------------eEEEEEcCCCCC--cceEEE-EcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence            88999998765                333333333333  788888 6655555433  23456777777644433333


Q ss_pred             ecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCCCC
Q 021484          187 VGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTD  223 (312)
Q Consensus       187 ~~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~  223 (312)
                      ...-.....+++.+.++.|.-+ ...+.|...++.+..
T Consensus       160 ~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            3333567899999987765555 466889888887654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.71  E-value=0.051  Score=43.16  Aligned_cols=72  Identities=13%  Similarity=0.165  Sum_probs=46.2

Q ss_pred             eEEEEEcCCCCcEEEEEeCC-CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c-C-
Q 021484           33 LNAIVIDPRNPNYFAVGGSD-EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-D-  108 (312)
Q Consensus        33 v~~~~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~-d-  108 (312)
                      ....++.+++ .+++.|+.+ ..+.+||..+..+....            .. .. ...-...+..++|++++.+ . + 
T Consensus        78 ~~~~~~~~~g-~i~v~Gg~~~~~~~~yd~~~~~w~~~~------------~~-~~-~r~~~~~~~~~dG~v~v~GG~~~~  142 (387)
T d1k3ia3          78 CPGISMDGNG-QIVVTGGNDAKKTSLYDSSSDSWIPGP------------DM-QV-ARGYQSSATMSDGRVFTIGGSWSG  142 (387)
T ss_dssp             SCEEEECTTS-CEEEECSSSTTCEEEEEGGGTEEEECC------------CC-SS-CCSSCEEEECTTSCEEEECCCCCS
T ss_pred             eeEEEEecCC-cEEEeecCCCcceeEecCccCcccccc------------cc-cc-cccccceeeecCCceeeecccccc
Confidence            3466788888 788887654 68999999988753211            00 10 1112345677889977775 2 2 


Q ss_pred             ----CcEEEEEcCCC
Q 021484          109 ----ELVYLFEKNMG  119 (312)
Q Consensus       109 ----~~i~iwd~~~~  119 (312)
                          ..+.+||..+.
T Consensus       143 ~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         143 GVFEKNGEVYSPSSK  157 (387)
T ss_dssp             SSCCCCEEEEETTTT
T ss_pred             ccccceeeeecCCCC
Confidence                35889998765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.12  E-value=0.12  Score=40.80  Aligned_cols=159  Identities=6%  Similarity=-0.007  Sum_probs=85.9

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCC-----------eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDE-----------YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS  100 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  100 (312)
                      ++.......++ ++++.|+.+.           .+.+||..++++...            ......+.......++.++|
T Consensus        21 ~~~~a~~~~~g-kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~------------~~~~~~~~~~~~~~~~~~~g   87 (387)
T d1k3ia3          21 PAAAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR------------TVTVTKHDMFCPGISMDGNG   87 (387)
T ss_dssp             CSEEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC------------EEEECSCCCSSCEEEECTTS
T ss_pred             ccEEEEEeeCC-EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeec------------CCCCCCcccceeEEEEecCC
Confidence            34444444556 7888877421           377899998874211            00001222223456788999


Q ss_pred             CeEEEec--CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC------ceE
Q 021484          101 ELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC------GHL  172 (312)
Q Consensus       101 ~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d------g~v  172 (312)
                      ++++.+.  ...+.+||..+..         |     .....+....   .-...+. .+++++++.|+.+      ..+
T Consensus        88 ~i~v~Gg~~~~~~~~yd~~~~~---------w-----~~~~~~~~~r---~~~~~~~-~~dG~v~v~GG~~~~~~~~~~v  149 (387)
T d1k3ia3          88 QIVVTGGNDAKKTSLYDSSSDS---------W-----IPGPDMQVAR---GYQSSAT-MSDGRVFTIGGSWSGGVFEKNG  149 (387)
T ss_dssp             CEEEECSSSTTCEEEEEGGGTE---------E-----EECCCCSSCC---SSCEEEE-CTTSCEEEECCCCCSSSCCCCE
T ss_pred             cEEEeecCCCcceeEecCccCc---------c-----cccccccccc---cccceee-ecCCceeeecccccccccccee
Confidence            9888863  5689999987651         0     1111111111   1234444 5789998888753      368


Q ss_pred             EEEeccCCeeEEEeec---------Ccc-----ceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484          173 FIWKKKGGKLVRLMVG---------DRH-----VVNQLEPHPHIPMFATCGIEKTVKLWAPMP  221 (312)
Q Consensus       173 ~iwd~~~~~~~~~~~~---------~~~-----~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  221 (312)
                      .+||..+.+....-..         +..     .-..+...++++.++.++.++.+.+++...
T Consensus       150 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~  212 (387)
T d1k3ia3         150 EVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS  212 (387)
T ss_dssp             EEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred             eeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCccc
Confidence            9999887764321110         000     001122234566666666666666666554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.99  E-value=0.21  Score=37.91  Aligned_cols=196  Identities=10%  Similarity=0.160  Sum_probs=115.6

Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEE
Q 021484           35 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF  114 (312)
Q Consensus        35 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iw  114 (312)
                      +.-.+|.. +.||.-+ ..++.+||+++++.+              +..  ...+.|.--.|-.+ +.|+--.+..|+-|
T Consensus        67 sAIMhP~~-~IiALra-g~~LQiFnletK~kl--------------ks~--~~~e~VvfWkWis~-~~L~lVT~taVYHW  127 (327)
T d1utca2          67 SAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM--------------KAH--TMTDDVTFWKWISL-NTVALVTDNAVYHW  127 (327)
T ss_dssp             EEEECSSS-SEEEEEE-TTEEEEEETTTTEEE--------------EEE--ECSSCCCEEEESSS-SEEEEECSSEEEEE
T ss_pred             hhhcCCCC-cEEEEec-CCeEEEEehhHhhhh--------------ceE--EcCCCcEEEEecCC-CEEEEEcCCceEEE
Confidence            56678877 6777765 578999999988732              111  11345666677644 45555667889999


Q ss_pred             EcCCCcCCCCCcCCcccccCCCCCceEecccCC--ceeeEEEEecCCCCEEEEec-------cCceEEEEeccCCeeEEE
Q 021484          115 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGS-------DCGHLFIWKKKGGKLVRL  185 (312)
Q Consensus       115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~v~~~s~~~~~l~~~~-------~dg~v~iwd~~~~~~~~~  185 (312)
                      +++...               .+.+.+.-|..-  ..|..-.. +++.++++..+       -.|.+.+|+... +.-+.
T Consensus       128 ~~~g~s---------------~P~k~fdR~~~L~~~QIInY~~-d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~  190 (327)
T d1utca2         128 SMEGES---------------QPVKMFDRHSSLAGCQIINYRT-DAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQP  190 (327)
T ss_dssp             ESSSSC---------------CCEEEEECCGGGTTCEEEEEEE-CTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEE
T ss_pred             cccCCC---------------CchhhhhhcccccCceEEEEEE-CCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCcc
Confidence            996542               355556544321  22555555 78888876543       246788998874 44567


Q ss_pred             eecCccceEEEEEcCCC---CeEEEEe---CCCcEEEccCCCCCC--CCCCCC----------hhhhhhhhccCCCCcee
Q 021484          186 MVGDRHVVNQLEPHPHI---PMFATCG---IEKTVKLWAPMPTDF--PPLPDN----------AEKIMKANKQGREDHSR  247 (312)
Q Consensus       186 ~~~~~~~v~~~~~~p~~---~~l~t~~---~d~~i~iwd~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~l  247 (312)
                      +.+|.+....+...-+.   ..|+.+.   ..+.+.|-++.....  ..++..          .+...-....+.....+
T Consensus       191 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygii  270 (327)
T d1utca2         191 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV  270 (327)
T ss_dssp             ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEE
T ss_pred             ccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEE
Confidence            78887655555443221   2333332   236788888765321  222110          01110011122234567


Q ss_pred             EEecCCceEEEEEecccCc
Q 021484          248 ITLTPDVIMHVLRLQRRQT  266 (312)
Q Consensus       248 ~s~~~d~~i~i~~~~~~~~  266 (312)
                      .-.+.-|.++++|+.+...
T Consensus       271 yviTK~G~i~lyDleTgt~  289 (327)
T d1utca2         271 FLITKYGYIHLYDLETGTC  289 (327)
T ss_dssp             EEEETTSEEEEEETTTCCE
T ss_pred             EEEecCcEEEEEEcccccE
Confidence            7788899999999988743

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.30  E-value=0.4  Score=36.34  Aligned_cols=184  Identities=9%  Similarity=0.126  Sum_probs=104.0

Q ss_pred             CeeecccCc-cceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEE--e----CCCeEEEEEccCCeecCCCCCCC
Q 021484            1 MWQFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG--G----SDEYARVYDIRKCHWYSPISSDT   73 (312)
Q Consensus         1 v~~wd~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~--~----~dg~i~iwd~~~~~~~~~~~~~~   73 (312)
                      |+.|++..+ .+.+++.-...-       ....|-.-..+++..=++++|  .    -.|.+.+|..+.+.         
T Consensus       124 VYHW~~~g~s~P~k~fdR~~~L-------~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~---------  187 (327)
T d1utca2         124 VYHWSMEGESQPVKMFDRHSSL-------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---------  187 (327)
T ss_dssp             EEEEESSSSCCCEEEEECCGGG-------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE---------
T ss_pred             eEEEcccCCCCchhhhhhcccc-------cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc---------
Confidence            467988533 344444332211       134677788888884333443  1    23678888887553         


Q ss_pred             CcccccccccccCCCccEEEEEEccCC---CeEEEe---c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCce-Eeccc
Q 021484           74 PVDTFCPRHLIGKNNIHITGLAYSNTS---ELLISY---N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHR  145 (312)
Q Consensus        74 ~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s~---~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  145 (312)
                             ...+.+|...-..+....+.   .+++-+   . .+++++.++...... ...++     + +.... +....
T Consensus       188 -------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g-~~~f~-----k-k~vdi~fppea  253 (327)
T d1utca2         188 -------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG-NQPFP-----K-KAVDVFFPPEA  253 (327)
T ss_dssp             -------EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTT-CCCCC-----C-EEEECCCCTTC
T ss_pred             -------CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccC-CCCCc-----c-eeEEEECCccc
Confidence                   22336665544444433222   133322   1 468889888763110 00000     0 00000 11111


Q ss_pred             CCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEE
Q 021484          146 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK  215 (312)
Q Consensus       146 ~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~  215 (312)
                      .....-++.. ++.-..++.-+.-|.|++||+.++.++..-+-....|...+-+....-++....+|.|.
T Consensus       254 ~~DFPvamqv-s~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         254 QNDFPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTCCEEEEEE-ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             cCCcEEEEEe-eccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            1122455666 77778888889999999999999999887776667776555566656677777777664

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.68  E-value=0.19  Score=39.34  Aligned_cols=71  Identities=6%  Similarity=0.077  Sum_probs=44.5

Q ss_pred             eeEEEEecCCCCEEEEecc---------------CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEE-eCCCc
Q 021484          150 VKGVNFFGPNDEYVMSGSD---------------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKT  213 (312)
Q Consensus       150 v~~v~~~s~~~~~l~~~~~---------------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~-~~d~~  213 (312)
                      ..+++. ..++.+++|-..               -+...+|..+.++.. .....-...+.++++|++++|+.+ +..+.
T Consensus       152 pNDv~~-~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~  229 (340)
T d1v04a_         152 VNDIVA-VGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR-VVAEGFDFANGINISPDGKYVYIAELLAHK  229 (340)
T ss_dssp             EEEEEE-EETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             ccceEE-ecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE-EEcCCCCccceeEECCCCCEEEEEeCCCCe
Confidence            678887 677888777321               122334444433332 222233467899999999885554 57789


Q ss_pred             EEEccCCCC
Q 021484          214 VKLWAPMPT  222 (312)
Q Consensus       214 i~iwd~~~~  222 (312)
                      |+.|++...
T Consensus       230 i~~y~~~~~  238 (340)
T d1v04a_         230 IHVYEKHAN  238 (340)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEeCCC
Confidence            999988754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.59  Score=34.83  Aligned_cols=156  Identities=10%  Similarity=-0.009  Sum_probs=92.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe--cC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY--ND  108 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~--~d  108 (312)
                      .+.++++.+.+.++..+-...+.|.+.++.....               ..+..........+++.|... ++.+.  ..
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~---------------~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~  142 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---------------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTP  142 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE---------------EEEEECTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCceE---------------EEEEcCCCCCcceEEEEcccCeEEEeccCCC
Confidence            4667888876656777767778899999875531               111133345678899998655 44443  24


Q ss_pred             CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe-ccCceEEEEeccCCeeEEEee
Q 021484          109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVRLMV  187 (312)
Q Consensus       109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~  187 (312)
                      +.|.-.++...                 ....+....- .....+++ ++.++.|+.+ ...+.|...++..........
T Consensus       143 ~~I~r~~~dGs-----------------~~~~l~~~~~-~~p~gl~i-D~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~  203 (266)
T d1ijqa1         143 AKIKKGGLNGV-----------------DIYSLVTENI-QWPNGITL-DLLSGRLYWVDSKLHSISSIDVNGGNRKTILE  203 (266)
T ss_dssp             CEEEEEETTSC-----------------CEEEEECSSC-SCEEEEEE-ETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred             cceeEeccCCC-----------------ceeccccccc-ceeeEEEe-eccccEEEEecCCcCEEEEEECCCCCEEEEEe
Confidence            56777776543                 2233322211 23678888 7766665544 667889988987544333332


Q ss_pred             cC--ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484          188 GD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  222 (312)
Q Consensus       188 ~~--~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  222 (312)
                      ..  .....++++. .+..+.+-..++.|.-.+..++
T Consensus       204 ~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         204 DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             CTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCC
Confidence            22  2345567765 2334444446677777765554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.57  E-value=0.85  Score=36.44  Aligned_cols=69  Identities=9%  Similarity=-0.009  Sum_probs=47.8

Q ss_pred             eeEEEEecCCCCEEEEec-cCceEEEEeccCCe------------eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484          150 VKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGK------------LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL  216 (312)
Q Consensus       150 v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~~~~------------~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~i  216 (312)
                      ...+.. +|+|+++++++ .+.++.|+|++.-.            ...+.. ..-....-+|...|.-..|.--|..|.-
T Consensus       277 PHGV~v-SPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~~g~aytslfids~v~k  354 (459)
T d1fwxa2         277 PHGCNM-APDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVK  354 (459)
T ss_dssp             CCCEEE-CTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEE
T ss_pred             CCceEE-CCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc-cCcCccccccCCCceEEEEeeccceEEE
Confidence            567888 99999986554 68999999986311            111212 2223456789888765666668999999


Q ss_pred             ccCC
Q 021484          217 WAPM  220 (312)
Q Consensus       217 wd~~  220 (312)
                      |++.
T Consensus       355 w~~~  358 (459)
T d1fwxa2         355 WNIE  358 (459)
T ss_dssp             EEHH
T ss_pred             Eecc
Confidence            9974

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.41  E-value=1.6  Score=36.44  Aligned_cols=54  Identities=7%  Similarity=-0.121  Sum_probs=35.9

Q ss_pred             ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          170 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       170 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      |.|.-+|+.+++.+-+..... +..+-...-.+.++++++.|+.++-+|.++++.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~  497 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence            568888888888775554221 111111122456777899999999999999873

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.26  E-value=1.6  Score=35.17  Aligned_cols=60  Identities=10%  Similarity=0.025  Sum_probs=37.9

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT   99 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   99 (312)
                      ...+|+|.|++ ++|++--..|+|++++..+++...       +..+........-......|+++|+
T Consensus        28 ~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~-------i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDN-QIWLTERATGKILRVNPESGSVKT-------VFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEE-------EEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEee-------cccCCccccccCCCCceeeEEeCCC
Confidence            46799999999 777776557999999877765321       1111000000122456889999996

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.06  E-value=2.1  Score=35.77  Aligned_cols=50  Identities=12%  Similarity=-0.076  Sum_probs=34.8

Q ss_pred             CCCEEEEeccCceEEEEeccCCeeEEEeecCccc-eEEEEEcCCCCe-EEEE
Q 021484          159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV-VNQLEPHPHIPM-FATC  208 (312)
Q Consensus       159 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~p~~~~-l~t~  208 (312)
                      .+.++++|+.||.++.+|.++|+.+-++...... -.-+.|..+|+. +++.
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~  525 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEE
Confidence            5678888999999999999999999877633211 112445557764 5443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.78  E-value=1.5  Score=35.07  Aligned_cols=101  Identities=8%  Similarity=0.042  Sum_probs=61.4

Q ss_pred             CCCccEEEEEEccCCCeEEEe-c-CC----cEEEEEcCCCcCCCCCcCCcccccCCCCCc-eEecccCCceeeEEEEecC
Q 021484           86 KNNIHITGLAYSNTSELLISY-N-DE----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGP  158 (312)
Q Consensus        86 ~~~~~i~~~~~~~~~~~l~s~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~s~  158 (312)
                      ++.-.+...+++|++++++.+ + +|    .|+++|+.++                +.+. .+....    ...++| .+
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg----------------~~~~~~i~~~~----~~~~~W-~~  180 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA----------------KELPDVLERVK----FSCMAW-TH  180 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT----------------EEEEEEEEEEC----SCCEEE-CT
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcc----------------eeccccccccc----ccceEE-cC
Confidence            444445677889999977754 2 33    5999999987                3322 222111    256888 88


Q ss_pred             CCCEEEEecc----------------CceEEEEeccCCee--EEEeecCc--cceEEEEEcCCCCeEEE
Q 021484          159 NDEYVMSGSD----------------CGHLFIWKKKGGKL--VRLMVGDR--HVVNQLEPHPHIPMFAT  207 (312)
Q Consensus       159 ~~~~l~~~~~----------------dg~v~iwd~~~~~~--~~~~~~~~--~~v~~~~~~p~~~~l~t  207 (312)
                      +++.|+-...                ...|+.+.+.+...  ...+....  ..+..+..++++++++.
T Consensus       181 D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         181 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             CCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence            8887764332                22577777766432  23333322  34667778999998653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.65  E-value=2.4  Score=35.32  Aligned_cols=52  Identities=12%  Similarity=0.194  Sum_probs=35.3

Q ss_pred             CCCCEEEEeccCceEEEEeccCCeeEEEeecCccce-EEEEEcCCCC-eEEEEe
Q 021484          158 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV-NQLEPHPHIP-MFATCG  209 (312)
Q Consensus       158 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~p~~~-~l~t~~  209 (312)
                      ..+.++++|+.||.++.+|..+|+.+-++....... .-+.+.-+|+ |++...
T Consensus       467 TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         467 TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (560)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             ECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence            356788899999999999999999998776432111 1144445775 444433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.67  E-value=2.2  Score=35.65  Aligned_cols=54  Identities=9%  Similarity=0.004  Sum_probs=38.8

Q ss_pred             ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          170 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       170 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      |.|.-||+.+++.+-..+... +...-..+-.+.++++++.|+.++.+|.++++.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~  510 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcE
Confidence            678899999999887665332 111111223677888899999999999999873

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.87  E-value=3.6  Score=32.23  Aligned_cols=147  Identities=8%  Similarity=-0.038  Sum_probs=85.3

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeec-CCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484           31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY-SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE  109 (312)
Q Consensus        31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~  109 (312)
                      ....-++.++.. -++++|+.++ ++|..+..-+.. .....+   ..+....-    -..|..++|+.+  .|+...++
T Consensus        37 ~~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~---~~~~~~~~----ip~v~~vafs~d--~l~v~~~~  105 (381)
T d1xipa_          37 ASLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTP---LTFKWEKE----IPDVIFVCFHGD--QVLVSTRN  105 (381)
T ss_dssp             SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCC---CCCSEEEE----CTTEEEEEEETT--EEEEEESS
T ss_pred             cccceEEEeCCC-CEEEEECCCE-EEEEEHHHHHHHhhccCCC---CcceeccC----CCCeEEEEeeCC--EEEEEeCC
Confidence            456778888866 4777777764 667765432110 000000   11111111    235888999754  56666677


Q ss_pred             cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec-
Q 021484          110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-  188 (312)
Q Consensus       110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-  188 (312)
                      .+..++...-                  ........-..++.++.+ .|  ..++....+|.+.++++..++......+ 
T Consensus       106 ~l~~~~~~~l------------------~~~~~~~~~~~~~~~~~~-~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v  164 (381)
T d1xipa_         106 ALYSLDLEEL------------------SEFRTVTSFEKPVFQLKN-VN--NTLVILNSVNDLSALDLRTKSTKQLAQNV  164 (381)
T ss_dssp             EEEEEESSST------------------TCEEEEEECSSCEEEEEE-CS--SEEEEEETTSEEEEEETTTCCEEEEEESE
T ss_pred             CEEEEEeecc------------------ccccccccccccccceec-CC--ceeEEEecCCCEEEEEeccCccccccCCc
Confidence            7888887643                  122222222234778876 55  4566667789999999988754332211 


Q ss_pred             ----CccceEEEEEcCCCCeEEEEe
Q 021484          189 ----DRHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       189 ----~~~~v~~~~~~p~~~~l~t~~  209 (312)
                          -.+.+.+++|++.+..++++.
T Consensus       165 ~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         165 TSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             ceEEecCCceEEEEeCCcEEEEEeC
Confidence                125678888988888877764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.61  E-value=4.7  Score=32.35  Aligned_cols=32  Identities=6%  Similarity=0.105  Sum_probs=26.9

Q ss_pred             CccEEEEEEccCCCeEEEec-CCcEEEEEcCCC
Q 021484           88 NIHITGLAYSNTSELLISYN-DELVYLFEKNMG  119 (312)
Q Consensus        88 ~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~  119 (312)
                      -...++|+|.|+|++|++-. .|.|++++..++
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g   58 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESG   58 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCC
Confidence            34678999999999999985 899999987665

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.09  E-value=4.8  Score=31.44  Aligned_cols=68  Identities=10%  Similarity=0.023  Sum_probs=40.7

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021484           32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV  111 (312)
Q Consensus        32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i  111 (312)
                      .|..++|+.+   .|+.. .++.+..++...-.              ..... ..-..++..+.++|.. .++...++.+
T Consensus        88 ~v~~vafs~d---~l~v~-~~~~l~~~~~~~l~--------------~~~~~-~~~~~~~~~~~~~p~~-~~l~~~~~~~  147 (381)
T d1xipa_          88 DVIFVCFHGD---QVLVS-TRNALYSLDLEELS--------------EFRTV-TSFEKPVFQLKNVNNT-LVILNSVNDL  147 (381)
T ss_dssp             TEEEEEEETT---EEEEE-ESSEEEEEESSSTT--------------CEEEE-EECSSCEEEEEECSSE-EEEEETTSEE
T ss_pred             CeEEEEeeCC---EEEEE-eCCCEEEEEeeccc--------------ccccc-ccccccccceecCCce-eEEEecCCCE
Confidence            4888999754   34443 44667777766432              00000 1123467788887753 3444568999


Q ss_pred             EEEEcCCC
Q 021484          112 YLFEKNMG  119 (312)
Q Consensus       112 ~iwd~~~~  119 (312)
                      .++++...
T Consensus       148 ~~~~l~~~  155 (381)
T d1xipa_         148 SALDLRTK  155 (381)
T ss_dssp             EEEETTTC
T ss_pred             EEEEeccC
Confidence            99998765

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=88.04  E-value=5.2  Score=33.12  Aligned_cols=54  Identities=9%  Similarity=-0.013  Sum_probs=38.0

Q ss_pred             ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          170 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       170 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      |.|.-+|+.+++.+-...... +...-...-.+.++++++.||.++.+|..+++.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcE
Confidence            678889999998876665222 221112223566777899999999999999874

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.82  E-value=3.5  Score=34.44  Aligned_cols=55  Identities=13%  Similarity=-0.087  Sum_probs=40.6

Q ss_pred             CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          169 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       169 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      .|.|.-+|+.+++.+-....+. ++..-..+..+.++++++.||.++.+|.++++.
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcE
Confidence            4789999999999887765432 222222334667877899999999999999974

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=81.54  E-value=9.4  Score=29.15  Aligned_cols=141  Identities=13%  Similarity=0.166  Sum_probs=74.2

Q ss_pred             cCCCCcEEEEE---eCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec----C---
Q 021484           39 DPRNPNYFAVG---GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----D---  108 (312)
Q Consensus        39 ~p~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----d---  108 (312)
                      .+++..+|++.   ....+|.+|++......        +.  ....+..........+++..++.+++|-.    .   
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~--------l~--~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~  176 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS--------LL--HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL  176 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTE--------EE--EEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHH
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCe--------EE--EEeecCCccccCccceEEecCCCEEEecCccCcChhh
Confidence            44553344443   24567888887643210        00  11111122234577888888888888731    1   


Q ss_pred             ---------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE-EeccCceEEEEecc
Q 021484          109 ---------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKK  178 (312)
Q Consensus       109 ---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~-~~~~dg~v~iwd~~  178 (312)
                               ....+|....+                 ..+.....-..  ...+++ +|++++|+ +-+..++|++|++.
T Consensus       177 ~~~e~~~~~~~g~v~~~~~~-----------------~~~~~~~~l~~--pNGI~~-s~d~~~lyVa~t~~~~i~~y~~~  236 (340)
T d1v04a_         177 KSWEMHLGLAWSFVTYYSPN-----------------DVRVVAEGFDF--ANGINI-SPDGKYVYIAELLAHKIHVYEKH  236 (340)
T ss_dssp             HHHHHHTTCCCEEEEEECSS-----------------CEEEEEEEESS--EEEEEE-CTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             hhhhHhhcCCceeEEEEcCC-----------------ceEEEcCCCCc--cceeEE-CCCCCEEEEEeCCCCeEEEEEeC
Confidence                     12334443332                 22222222222  789998 99988775 44668899999987


Q ss_pred             CCeeEEEee--cCccceEEEEEcCCCCeEEEEe
Q 021484          179 GGKLVRLMV--GDRHVVNQLEPHPHIPMFATCG  209 (312)
Q Consensus       179 ~~~~~~~~~--~~~~~v~~~~~~p~~~~l~t~~  209 (312)
                      ....+....  .-...+-.+.+.+.+..+..++
T Consensus       237 ~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         237 ANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             TTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            543222211  1234566788876544433433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=80.61  E-value=14  Score=30.65  Aligned_cols=54  Identities=9%  Similarity=-0.021  Sum_probs=37.1

Q ss_pred             ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484          170 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  224 (312)
Q Consensus       170 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  224 (312)
                      |.|.-||+.+++.+-..... .++..-..+-.+.+++.|+.||.++.+|.++++.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~  506 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ceEEEEeCCCCceecccCCC-CCCccceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence            57888899888876554321 2222212233567777899999999999999874