Citrus Sinensis ID: 021504

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSKAHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL
Secondary Structure (PSIPRED)
ccccccccccccEEEEEcccccccccccccccccccccccEEEEccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHcccccccccccccccccEEcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHccccEEEEEcccccccEEEEccccccccccccEEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEccccHccHcEEEEcccccHcccccEEEEEEcccccEEEEEEcccccccccccEEEEEEccccccccccccccccccccccccccEEccccccccccccccccccccccccccEEEEEEEEEEccccccccccHHHHHHccccccHHccccccccEEEccEEEEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEEEcccccccEEEEEEcccccccccEEEEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
MIVSTSICACAKNVvnlggrfqgqmggnicgvtyrgpsssccfylcsgqskknyagisrtisssslnvlqpfqatcfspgltkpsmkmrllvpsqgvlpklklnagpidwpkgcasagLICGLLVCYSSskahaeaadekedgeedydlsnvkyshgkkvytdysvigipgdgrCLFRAVAHGAclragkpapsvsIQRELADDLRAKVADEFIKRReetewfiegdfdlyvsqirkphvwggepellmashvlrmpitvymhdkdaggLISIAEYGqeygkekpirVLYHGfghydalqnlgheggiskl
Flexible Loop (DISEMBL)
MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSKAHAEAadekedgeedydlsnvkyshgkkvyTDYSVIGIPGDGRCLFRAVAHGACLragkpapsvsiqreLADDLRAKVADEFIkrreetewfiegdfDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALqnlgheggiskl
Low Complexity Region (SEG)
MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSKahaeaadekedgeedydLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL
Disordered region (IsUnstruct)
***STSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYS*********************SNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNL*********
Disordered Region (DISOPRED)
**VSTSICACAKNVVNLGGRFQ*****************************************************************************************************************************************VYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLI**A*****YGKEKPIRVLYHGFGHYDALQ***********
Disordered Region (DISEMBL)
MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSS*****************DLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL
Disordered Region (DISPRO)
MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSS*************************HGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNL*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSKAHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	311	2.2.26 [Sep-21-2011]
Q8LBZ4	317	OTU domain-containing pro	yes	no	0.974	0.955	0.515	6e-83
Q6GM06	294	OTU domain-containing pro	N/A	no	0.546	0.578	0.261	4e-09
Q7L8S5	288	OTU domain-containing pro	yes	no	0.414	0.447	0.324	3e-07
Q5M8L0	294	OTU domain-containing pro	yes	no	0.575	0.608	0.245	5e-06
Q7ZX21	513	OTU domain-containing pro	N/A	no	0.369	0.224	0.253	1e-05
Q96G74	571	OTU domain-containing pro	no	no	0.382	0.208	0.259	1e-05
Q8N6M0	293	OTU domain-containing pro	no	no	0.414	0.440	0.273	2e-05
Q7ZV00	293	OTU domain-containing pro	no	no	0.440	0.467	0.296	2e-05
Q640H3	518	OTU domain-containing pro	N/A	no	0.369	0.222	0.253	2e-05
Q6GL44	518	OTU domain-containing pro	no	no	0.369	0.222	0.253	3e-05

>sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1

 Score =  307 bits (787), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 163/316 (51%), Positives = 212/316 (67%), Gaps = 13/316 (4%)

Query: 1   MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRT 60
           MI  + I  C++N +++    +  +G  + GV   G S   C+ L SG S+++Y G   +
Sbjct: 2   MICYSPITTCSRNAISI----KRHLGSRLYGVVAHGSSKFSCYSLLSGLSRRHYTGFRVS 57

Query: 61  ISS--SSLNVLQPFQATCFSPGLTKPSMKMRL--LVPSQGV-LPKLKLNAGPIDWPKGCA 115
           +S+  SS +    F +   +     P  K+ +  L P   +   K++ N   +      A
Sbjct: 58  VSNRPSSWHDKGLFGSVLINRPTVAPKEKLEVSFLSPEANMKCSKIESNMRNLYCYSRFA 117

Query: 116 SAGLICGLLVCYSSSK--AHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDG 173
             G+I  LLVCYSS+   A+A+++ +K+     +  S+ K+ +GK+VYTDYS+IGIPGDG
Sbjct: 118 YTGVIVSLLVCYSSTSQSAYADSSRDKDANNVHHHSSDGKFHNGKRVYTDYSIIGIPGDG 177

Query: 174 RCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVS 233
           RCLFR+VAHG CLR+GK AP   +QRELAD+LR +VADEFI+RR+ETEWF+EGDFD YV 
Sbjct: 178 RCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQRRQETEWFVEGDFDTYVR 237

Query: 234 QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGF 293
           QIR PHVWGGEPEL MASHVL+MPITVYM D  AGGLISIAEYGQEYGK+ PIRVLYHGF
Sbjct: 238 QIRDPHVWGGEPELFMASHVLQMPITVYMKDDKAGGLISIAEYGQEYGKDDPIRVLYHGF 297

Query: 294 GHYDALQNLGHEGGIS 309
           GHYDAL  L HE   S
Sbjct: 298 GHYDAL--LLHESKAS 311

Arabidopsis thaliana (taxid: 3702)

>sp|Q6GM06|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2 SV=1

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 25/195 (12%)

Query: 125 VCYSSSKAHAEAADEKEDGE-----EDYDLSNVKYSHGKKVYT-----DYSVIGIPGDGR 174
           V  +  +   +AA EKE  +     E  +LS  ++   +K+       +  +  IP DG 
Sbjct: 101 VSKAQKRREKKAAQEKERDDRIAEAEIANLSGARHLESQKLAQILAERELQIRQIPSDGH 160

Query: 175 CLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVAD--EFIKRREETEWFIEGDFDLYV 232
           C++RA+ H      G      +++ + AD ++ +  D   F+      + + + +F  Y 
Sbjct: 161 CMYRAIEHQLN-EQGNSLTVANLRSQTADYMQKRAEDFLPFLTNSSTGDMYTQEEFQKYC 219

Query: 233 SQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY-- 290
           + I     WGG+ EL   SH+L+ PI V      A  L  +   G+EY   KPI ++Y  
Sbjct: 220 TDIVNTPAWGGQLELRALSHILKTPIEVIQ----AESLPIV--IGEEYSN-KPITLVYMR 272

Query: 291 HGFG---HYDALQNL 302
           H +G   HY++++ L
Sbjct: 273 HAYGLGEHYNSVEQL 287

Xenopus laevis (taxid: 8355)

>sp|Q7L8S5|OTU6A_HUMAN OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 22/151 (14%)

Query: 168 GIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFI---KRREETEWFI 224
            IP DG C++RA+           + SV + R        K  DEF+      E ++ F 
Sbjct: 145 AIPADGHCMYRAIQDQLVF-----SVSVEMLRCRTASYMKKHVDEFLPFFSNPETSDSFG 199

Query: 225 EGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEK 284
             DF +Y   I +   WGG+ EL   SHVL+ PI V     D+  LI     G+EY K K
Sbjct: 200 YDDFMIYCDNIVRTTAWGGQLELRALSHVLKTPIEVI--QADSPTLI----IGEEYVK-K 252

Query: 285 PIRVLYHGFG-----HYDALQNL--GHEGGI 308
           PI ++Y  +      HY+++  L  G  GG+
Sbjct: 253 PIILVYLRYAYSLGEHYNSVTPLEAGAAGGV 283

Homo sapiens (taxid: 9606)

>sp|Q5M8L0|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b PE=2 SV=1

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 37/216 (17%)

Query: 104 NAGPIDWPKGCASAGLICGLLVCYSSSKAHAEAADEKEDGE-----EDYDLSNVKYSHGK 158
           N  P+  P+   +              +   +AA EKE  E     E  +LS  ++   +
Sbjct: 92  NEAPVQQPRQSKA------------QKRREKKAAQEKERDERIAEAEIANLSGARHLESQ 139

Query: 159 KV-----YTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVAD-- 211
           K+       +  +  IP DG C++RA+ H    R G      +++ + AD ++    D  
Sbjct: 140 KLARILAERELQIRQIPSDGHCMYRAIEHQLRER-GNDLTVANLRSQTADYMQNHAEDFL 198

Query: 212 EFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLI 271
            F+      + + + +F  Y + I     WGG+ EL   SH+L+  I V   +      I
Sbjct: 199 PFLTNSSTGDMYTQEEFLKYCTDIVNTPAWGGQLELRALSHILKTAIEVIQAE---SSPI 255

Query: 272 SIAEYGQEYGKEKPIRVLY--HGFG---HYDALQNL 302
            I   G+EY   K I ++Y  H +G   HY++++ L
Sbjct: 256 VI---GEEYSS-KAITLVYMRHAYGLGEHYNSVELL 287

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZX21|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 15/130 (11%)

Query: 172 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 231
           DG CLFRAVA             V   +++ + +R    D  +K  +    ++  DF  Y
Sbjct: 174 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 222

Query: 232 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 291
           +++ RK +  G   E+   + +   P+ VY +  +         +G +  +++PIRV YH
Sbjct: 223 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTF----HGIQKNEDEPIRVSYH 278

Query: 292 GFGHYDALQN 301
              HY+++ N
Sbjct: 279 RNIHYNSVVN 288

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 12/131 (9%)

Query: 172 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 231
           DG CLFRAVA             V   +++ + +R    D  +K  +    ++  DF  Y
Sbjct: 221 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 269

Query: 232 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEY-GQEYGKEKPIRVLY 290
           +++ RK +  G   E+   + +   P+ VY +      +  I  + G    +++PIRV Y
Sbjct: 270 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSY 329

Query: 291 HGFGHYDALQN 301
           H   HY+++ N
Sbjct: 330 HRNIHYNSVVN 340

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8N6M0|OTU6B_HUMAN OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 17/146 (11%)

Query: 165 SVIGIPGDGRCLFRAVAHGACLRAGKPAPSV-SIQRELADDLRAKVAD--EFIKRREETE 221
            +  IP DG C+++A+     L+    A +V +++ + A+ +++ V D   F+      +
Sbjct: 148 EIKQIPSDGHCMYKAIEDQ--LKEKDCALTVVALRSQTAEYMQSHVEDFLPFLTNPNTGD 205

Query: 222 WFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYG 281
            +   +F  Y   I     WGG+ EL   SH+L+ PI +     D+  +I     G+EY 
Sbjct: 206 MYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEII--QADSPPII----VGEEYS 259

Query: 282 KEKPIRVLY--HGFG---HYDALQNL 302
           K KP+ ++Y  H +G   HY+++  L
Sbjct: 260 K-KPLILVYMRHAYGLGEHYNSVTRL 284

Homo sapiens (taxid: 9606)

>sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 15/152 (9%)

Query: 158 KKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVAD--EFIK 215
           K V     +  I  DG C++RAV H    R G       ++ + A  +R+   D   F+ 
Sbjct: 141 KLVERHLQIKEISSDGHCMYRAVEHQLTER-GLALGLKELRDQTAQYMRSHADDFMPFLT 199

Query: 216 RREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAE 275
                + +   +F+ Y S +     WGG+ EL   S VL++PI V   D      I+I  
Sbjct: 200 NPNTGDMYTAEEFEKYCSDVADTAAWGGQLELKALSQVLQLPIEVIQAD---SPCITI-- 254

Query: 276 YGQEYGKEKPIRVLY--HGFG---HYDALQNL 302
            G+EY K K I ++Y  H +G   HY++++ L
Sbjct: 255 -GEEYDKPK-ITLIYMRHAYGLGEHYNSVEPL 284

Danio rerio (taxid: 7955)

>sp|Q640H3|OTU5B_XENLA OTU domain-containing protein 5-B OS=Xenopus laevis GN=otud5-b PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 15/130 (11%)

Query: 172 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 231
           DG CLFRAVA             V   +++ + +R    D  +K  +    ++  DF  Y
Sbjct: 179 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 227

Query: 232 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 291
           +++ RK +  G   E+   + +   P+ VY +  +         +G +  +++PIRV YH
Sbjct: 228 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTF----HGIQQNEDEPIRVSYH 283

Query: 292 GFGHYDALQN 301
              HY+++ N
Sbjct: 284 RNIHYNSVVN 293

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q6GL44|OTUD5_XENTR OTU domain-containing protein 5 OS=Xenopus tropicalis GN=otud5 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 15/130 (11%)

Query: 172 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 231
           DG CLFRAVA             V   +++ + +R    D  +K  +    ++  DF  Y
Sbjct: 179 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 227

Query: 232 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 291
           +++ RK +  G   E+   + +   P+ VY +  +         +G +  +++PIRV YH
Sbjct: 228 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTF----HGIQQNEDEPIRVSYH 283

Query: 292 GFGHYDALQN 301
              HY+++ N
Sbjct: 284 RNIHYNSVVN 293

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
359481937	340	PREDICTED: OTU domain-containing protein	0.987	0.902	0.595	1e-110
255587443	343	cysteine-type peptidase, putative [Ricin	0.996	0.903	0.575	1e-102
147779061	806	hypothetical protein VITISV_002512 [Viti	0.842	0.325	0.667	2e-97
224139840	319	predicted protein [Populus trichocarpa]	0.919	0.896	0.584	1e-96
363806736	339	uncharacterized protein LOC100810338 [Gl	0.964	0.884	0.579	2e-92
449437605	286	PREDICTED: OTU domain-containing protein	0.881	0.958	0.589	2e-86
224120200	223	predicted protein [Populus trichocarpa]	0.691	0.964	0.703	1e-85
297817112	313	hypothetical protein ARALYDRAFT_486235 [	0.974	0.968	0.522	3e-82
30694718	317	Cysteine proteinases-like protein [Arabi	0.974	0.955	0.515	4e-81
79447694	274	Cysteine proteinases-like protein [Arabi	0.852	0.967	0.508	7e-78

>gi|359481937|ref|XP_003632695.1| PREDICTED: OTU domain-containing protein At3g57810-like [Vitis vinifera]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/344 (59%), Positives = 242/344 (70%), Gaps = 37/344 (10%)

Query: 1   MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQS--KKNYAGIS 58
           MI    I  CA+N+V L G  Q QM  +IC +  +GPSSS  FY  +G S  K  +  +S
Sbjct: 1   MINCYPISTCARNIVRLSGCVQRQMSSHICSLVSQGPSSSFSFYFYTGHSKPKNTFMSVS 60

Query: 59  RTISSSSLNVLQPFQATCFSPGLTK------------------PS------------MKM 88
            T S SS+     FQ +CF  GL+K                  PS            M +
Sbjct: 61  ETFSCSSITAFHTFQGSCFYSGLSKRRGSSRSLTVKSLIGSRGPSKRSLNISLTCQNMNV 120

Query: 89  RLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSK-AHAEAADEKEDGEEDY 147
           RLLVP QGVLPK+K N G + WP+GCASAGL+  LLVCYSSS+  HAE+A +KED + + 
Sbjct: 121 RLLVPKQGVLPKIKCNVGSVSWPQGCASAGLMFALLVCYSSSEPVHAESAQKKEDKKGEC 180

Query: 148 DLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRA 207
             +    SHGKKVYTDYS+ GIPGDGRCLFR+V HGACLR+GKPAPS S QRELAD+LRA
Sbjct: 181 YTN----SHGKKVYTDYSITGIPGDGRCLFRSVVHGACLRSGKPAPSASCQRELADELRA 236

Query: 208 KVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDA 267
           +V DEFI+RR ETEWFIEGDFD YVSQ+RKPHVWGGEPEL MASHVL+MPITVYM+DKD+
Sbjct: 237 EVVDEFIRRRSETEWFIEGDFDTYVSQMRKPHVWGGEPELFMASHVLQMPITVYMYDKDS 296

Query: 268 GGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL 311
           GGLI+IAEYGQEYGKE PIRVLYHGFGHY++LQ  G +G  S+L
Sbjct: 297 GGLIAIAEYGQEYGKENPIRVLYHGFGHYESLQIPGKKGAKSRL 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587443|ref|XP_002534273.1| cysteine-type peptidase, putative [Ricinus communis] gi|223525596|gb|EEF28110.1| cysteine-type peptidase, putative [Ricinus communis]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/344 (57%), Positives = 237/344 (68%), Gaps = 34/344 (9%)

Query: 1   MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYA--GIS 58
           MIV + I   A+ VV L G  Q  MG  I  +   G S+SCCF  C     K+YA   IS
Sbjct: 1   MIVCSPISTYARKVVYLSGCAQ-HMGSTIFNMVSNGQSTSCCFCSCRAHLSKSYARLSIS 59

Query: 59  RTISSSSLNVLQP----------------FQATC--------------FSPGLTKPSMKM 88
           +T SS S+   Q                 +Q+                F+  L   ++ M
Sbjct: 60  KTFSSPSVGTCQTSNKNFSGSGSAKQSGSWQSITVKGLFNTRGPLKKHFNLSLAYQNLNM 119

Query: 89  RLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSK-AHAEAADEKEDGEEDY 147
           R  +  +G+L K+K N G I W + CAS GLICGLLVCYSSS+   AEAA  ++D E++ 
Sbjct: 120 RFSLSKRGMLSKIKDNVGSISWAQECASTGLICGLLVCYSSSEPTRAEAAAREKDEEDNS 179

Query: 148 DLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRA 207
           DLS VK+SHGK+VYTDYS+ GIPGDGRCLFR+VAHGA LR GKPAPS S+QRELADDLRA
Sbjct: 180 DLSYVKFSHGKRVYTDYSITGIPGDGRCLFRSVAHGASLRTGKPAPSESLQRELADDLRA 239

Query: 208 KVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDA 267
           +VADEFI+RR+ETEWFIEGDFD YV+Q+RKPHVWGGEPEL MASHVL+MPITVYM+D++A
Sbjct: 240 RVADEFIRRRQETEWFIEGDFDTYVAQMRKPHVWGGEPELFMASHVLKMPITVYMYDQNA 299

Query: 268 GGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL 311
            GLISIAEYG+EYGK+ PIRVLYHGFGHYDALQ  G +GG  KL
Sbjct: 300 RGLISIAEYGEEYGKDNPIRVLYHGFGHYDALQIPGRKGGKPKL 343

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779061|emb|CAN60311.1| hypothetical protein VITISV_002512 [Vitis vinifera]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 181/271 (66%), Positives = 214/271 (78%), Gaps = 9/271 (3%)

Query: 42  CFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPSMKMRLLVPSQGVLPKL 101
           CFY  SG SK+   G SR+++  SL   +       +  LT  +M +RLLVP QGVLPK+
Sbjct: 544 CFY--SGLSKRR--GSSRSLTVKSLIGSRGPSKRSLNISLTCQNMNVRLLVPKQGVLPKI 599

Query: 102 KLNAGPIDWPKGCASAGLICGLLVCYSSSK-AHAEAADEKEDGEEDYDLSNVKYSHGKKV 160
           K N G + WP+GCASAGL+  LLVCYSSS+  HAE+A +KED + +   +    SHGKKV
Sbjct: 600 KCNVGSVSWPQGCASAGLMFALLVCYSSSEPVHAESAQKKEDKKGECYTN----SHGKKV 655

Query: 161 YTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREET 220
           YTDYS+ GIPGDGRCLFR+V HGACLR+GKPAPS S QRELAD+LRA+V DEFI+RR ET
Sbjct: 656 YTDYSITGIPGDGRCLFRSVVHGACLRSGKPAPSASCQRELADELRAEVVDEFIRRRSET 715

Query: 221 EWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEY 280
           EWFIEGDFD YVSQ+RKPHVWGGEPEL MASHVL+MPITVYM+DKD+GGLI+IAEYGQEY
Sbjct: 716 EWFIEGDFDTYVSQMRKPHVWGGEPELFMASHVLQMPITVYMYDKDSGGLIAIAEYGQEY 775

Query: 281 GKEKPIRVLYHGFGHYDALQNLGHEGGISKL 311
           GKE PIRVLYHGFGHY++LQ  G +G  S+L
Sbjct: 776 GKENPIRVLYHGFGHYESLQIPGKKGAKSRL 806

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139840|ref|XP_002323302.1| predicted protein [Populus trichocarpa] gi|222867932|gb|EEF05063.1| predicted protein [Populus trichocarpa]

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 187/320 (58%), Positives = 224/320 (70%), Gaps = 34/320 (10%)

Query: 25  MGGNICGVTYRGPSSSCCF--YLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLT 82
           MG  I  V   G ++SCCF  Y    +S  +   +S+T S  S++  Q  Q+ CF   LT
Sbjct: 1   MGSTILNVVSGGQTTSCCFSSYPGLSRSSYSRLSVSKTFSCPSIS-YQTIQSNCFGSVLT 59

Query: 83  KPS------------------------------MKMRLLVPSQGVLPKLKLNAGPIDWPK 112
           K                                M +R  V  QGVL K+  N G I W +
Sbjct: 60  KQRADLQSFSVKGVVRSRGPLKRQFNISLPCQIMNLRFSVSKQGVLSKINDNTGSISWSQ 119

Query: 113 GCASAGLICGLLVCYSSSK-AHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPG 171
           G  + G+I GLLVCYSSS+  HAEAA  K + E++ +LS++K+SHGK+VY DYS+IGIPG
Sbjct: 120 GYPTTGIIFGLLVCYSSSEPTHAEAATHKNEEEDNCNLSDIKFSHGKEVYRDYSIIGIPG 179

Query: 172 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 231
           DGRCLFR+VAHGAC+R+GKPAPS ++QRELADDLR+KVADEFIKRREETEWFIEG+FD Y
Sbjct: 180 DGRCLFRSVAHGACIRSGKPAPSENLQRELADDLRSKVADEFIKRREETEWFIEGNFDTY 239

Query: 232 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 291
           VS+IRKPHVWGGEPELLMASHVL+MPITVYM DK++GGLISIAEYGQEYGKE PIR++YH
Sbjct: 240 VSRIRKPHVWGGEPELLMASHVLKMPITVYMDDKNSGGLISIAEYGQEYGKEDPIRIIYH 299

Query: 292 GFGHYDALQNLGHEGGISKL 311
           GFGHYDALQ     GG SKL
Sbjct: 300 GFGHYDALQFPRTRGGKSKL 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806736|ref|NP_001242273.1| uncharacterized protein LOC100810338 [Glycine max] gi|255645865|gb|ACU23423.1| unknown [Glycine max]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/328 (57%), Positives = 225/328 (68%), Gaps = 28/328 (8%)

Query: 1   MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRT 60
           M +  S    + N V L GR    M  NI G+  +G S+S    L  G+S+ ++ G+S  
Sbjct: 1   MSICFSTSQSSINAVVLKGRTPLLMSSNIHGLWSQGISTSISSSLSPGKSEISHVGLSVC 60

Query: 61  ISSSSLNVLQP-----FQATCFSPGLTKP--------------------SMKMRLLVPSQ 95
              S   V+       F  +C S     P                    ++ MRLLVP Q
Sbjct: 61  TKLSCSTVMGQTIRGGFLGSCCSKQRGNPRFFSSVVPRKRYHEISLACQTINMRLLVPKQ 120

Query: 96  GVLPKLKLNAGPIDWPKGCASAGLICGLLVC-YSSSKAHAEAADEKEDGEEDYDL--SNV 152
            ++ K+K N G + WP+GCAS GLI GLLVC  SS  AHAE+  E E+ ++D +   SNV
Sbjct: 121 NMMRKVKCNLGSVSWPRGCASVGLIFGLLVCNLSSEPAHAESHSENENRKDDCNEYESNV 180

Query: 153 KYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADE 212
           K  HGKKVYTDYSVIGIPGDGRCLFR+VA GACLR+GKP P+ SIQRELADDLRA+VADE
Sbjct: 181 KVLHGKKVYTDYSVIGIPGDGRCLFRSVARGACLRSGKPPPNESIQRELADDLRARVADE 240

Query: 213 FIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLIS 272
           FIKR+EETEWF+EGDFD YVSQIRKPHVWGGE EL +ASHVL+MPITVYM+DKDAGGLIS
Sbjct: 241 FIKRKEETEWFVEGDFDTYVSQIRKPHVWGGESELFIASHVLQMPITVYMYDKDAGGLIS 300

Query: 273 IAEYGQEYGKEKPIRVLYHGFGHYDALQ 300
           IAEYGQ+YGKE PIRVLYHGFGHYDAL+
Sbjct: 301 IAEYGQKYGKENPIRVLYHGFGHYDALE 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437605|ref|XP_004136582.1| PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus] gi|449522883|ref|XP_004168455.1| PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 185/314 (58%), Positives = 209/314 (66%), Gaps = 40/314 (12%)

Query: 6   SICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGIS-RTISSS 64
           SI  C +N V L    + QMG NIC V  R  S+SCC Y   G S+  YA  S  TISS 
Sbjct: 5   SISICTRNAVPLN--LRTQMGSNICTVLSRRTSTSCCSY---GISRPKYADQSVTTISSC 59

Query: 65  SLNVLQPFQA-----TCFSPGLTKPSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGL 119
           S N  Q FQA     TCFS          R  +  Q    K  +  G         S G 
Sbjct: 60  SPNTSQRFQAGGCLSTCFS----------RRSIDFQAFTVKDLITDG--------GSRGR 101

Query: 120 ICGL-LVCYSSSKAHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFR 178
              + L C          A EK+D EE+ D S+VK SHGKKVYTDYSVIGIPGDGRCLFR
Sbjct: 102 DVEISLAC---------KAYEKDDNEENSDSSHVKLSHGKKVYTDYSVIGIPGDGRCLFR 152

Query: 179 AVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKP 238
           +VAHGACLR+GKPAPS S+QR+LAD+LR+ VADEFIKRREETEWF+EGDFD Y+S +R P
Sbjct: 153 SVAHGACLRSGKPAPSESLQRDLADELRSNVADEFIKRREETEWFVEGDFDTYMSNMRNP 212

Query: 239 HVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDA 298
           HVWGGEPEL MASHVL+ PI VYM+DKD+GGLISIAEYG EYGKE PIRVLYHGFGHYDA
Sbjct: 213 HVWGGEPELFMASHVLQAPIIVYMYDKDSGGLISIAEYGDEYGKENPIRVLYHGFGHYDA 272

Query: 299 LQNLGHEG-GISKL 311
           LQ   ++G G SKL
Sbjct: 273 LQIPANQGVGRSKL 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120200|ref|XP_002330989.1| predicted protein [Populus trichocarpa] gi|222872919|gb|EEF10050.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 152/216 (70%), Positives = 180/216 (83%), Gaps = 1/216 (0%)

Query: 86  MKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSK-AHAEAADEKEDGE 144
           M +R  V  +G+L K+K N G +   +   + G+  GLLVCYSSS+  HAE+A  K   E
Sbjct: 1   MALRFSVSKRGLLAKIKGNVGSVSCSQRHTTTGIFFGLLVCYSSSEPTHAESATRKNKEE 60

Query: 145 EDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADD 204
           +  + S++K+SHGK+VYTDYS+IG+PGDGRCLFR+VAHGACLR GK APS S+QRELADD
Sbjct: 61  DICNSSDIKFSHGKEVYTDYSIIGVPGDGRCLFRSVAHGACLRFGKRAPSESLQRELADD 120

Query: 205 LRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHD 264
           LR+ VADEFIKRRE+TEWFIEG+FD YVSQ+RKPHVWGGEPELLMASHVL+MPITVYMHD
Sbjct: 121 LRSNVADEFIKRREDTEWFIEGNFDTYVSQMRKPHVWGGEPELLMASHVLKMPITVYMHD 180

Query: 265 KDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQ 300
           K+A GLISIAEYGQEYG E PIRV+Y+GFGHYDALQ
Sbjct: 181 KNARGLISIAEYGQEYGVENPIRVIYNGFGHYDALQ 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817112|ref|XP_002876439.1| hypothetical protein ARALYDRAFT_486235 [Arabidopsis lyrata subsp. lyrata] gi|297322277|gb|EFH52698.1| hypothetical protein ARALYDRAFT_486235 [Arabidopsis lyrata subsp. lyrata]

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 163/312 (52%), Positives = 210/312 (67%), Gaps = 9/312 (2%)

Query: 1   MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRT 60
           MI  + I  C++N +N+    +G +G ++ GV  +G     C  L  G S+++Y G   +
Sbjct: 2   MICYSPITTCSRNAINI----KGHLGTHLYGVVAQGSYKFSCHSLLLGLSRRHYTGFRVS 57

Query: 61  ISSSSLNVLQPFQATCFSPGLTKPSMKMRLLVPSQGV-LPKLKLNAGPIDWPKGCASAGL 119
           +S+   +          S    K  +++  L P   +   K++ N   + W    A  G+
Sbjct: 58  VSNRPSSWHDKRLLINRSTVGPKEKLEVSFLSPDAKMKCSKIESNMRNLYWYSRFAYTGV 117

Query: 120 ICGLLVCYSSSK--AHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLF 177
           I  LLVCYSS+   A+A+A+ +K+        S+ K+ +GK+VYTDYS+IGIPGDGRCLF
Sbjct: 118 IVSLLVCYSSTSQSAYADASRDKDANNVHNHSSHGKFHNGKRVYTDYSIIGIPGDGRCLF 177

Query: 178 RAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRK 237
           R+VAHG CLR+GK AP   +QRELAD+LR KVADEFIKRR+ETEWF+EGDFD YV QIR+
Sbjct: 178 RSVAHGFCLRSGKLAPGEKMQRELADELRTKVADEFIKRRQETEWFVEGDFDSYVRQIRE 237

Query: 238 PHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYD 297
           PHVWGGEPEL +ASHVL+MPITVYM D+ AGGLISIAEYGQEYGK+ PIRVLYHGFGHYD
Sbjct: 238 PHVWGGEPELFIASHVLQMPITVYMKDEKAGGLISIAEYGQEYGKDDPIRVLYHGFGHYD 297

Query: 298 ALQNLGHEGGIS 309
           AL  L HE   S
Sbjct: 298 AL--LIHESKAS 307

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694718|ref|NP_850716.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|145332883|ref|NP_001078307.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|75155093|sp|Q8LBZ4.1|OTU_ARATH RecName: Full=OTU domain-containing protein At3g57810 gi|21555880|gb|AAM63953.1| unknown [Arabidopsis thaliana] gi|109946583|gb|ABG48470.1| At3g57810 [Arabidopsis thaliana] gi|332646184|gb|AEE79705.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|332646185|gb|AEE79706.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|407078834|gb|AFS88948.1| deubiquitinating enzyme OTU4 isoform ia [Arabidopsis thaliana]

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 163/316 (51%), Positives = 212/316 (67%), Gaps = 13/316 (4%)

Query: 1   MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRT 60
           MI  + I  C++N +++    +  +G  + GV   G S   C+ L SG S+++Y G   +
Sbjct: 2   MICYSPITTCSRNAISI----KRHLGSRLYGVVAHGSSKFSCYSLLSGLSRRHYTGFRVS 57

Query: 61  ISS--SSLNVLQPFQATCFSPGLTKPSMKMRL--LVPSQGV-LPKLKLNAGPIDWPKGCA 115
           +S+  SS +    F +   +     P  K+ +  L P   +   K++ N   +      A
Sbjct: 58  VSNRPSSWHDKGLFGSVLINRPTVAPKEKLEVSFLSPEANMKCSKIESNMRNLYCYSRFA 117

Query: 116 SAGLICGLLVCYSSSK--AHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDG 173
             G+I  LLVCYSS+   A+A+++ +K+     +  S+ K+ +GK+VYTDYS+IGIPGDG
Sbjct: 118 YTGVIVSLLVCYSSTSQSAYADSSRDKDANNVHHHSSDGKFHNGKRVYTDYSIIGIPGDG 177

Query: 174 RCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVS 233
           RCLFR+VAHG CLR+GK AP   +QRELAD+LR +VADEFI+RR+ETEWF+EGDFD YV 
Sbjct: 178 RCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQRRQETEWFVEGDFDTYVR 237

Query: 234 QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGF 293
           QIR PHVWGGEPEL MASHVL+MPITVYM D  AGGLISIAEYGQEYGK+ PIRVLYHGF
Sbjct: 238 QIRDPHVWGGEPELFMASHVLQMPITVYMKDDKAGGLISIAEYGQEYGKDDPIRVLYHGF 297

Query: 294 GHYDALQNLGHEGGIS 309
           GHYDAL  L HE   S
Sbjct: 298 GHYDAL--LLHESKAS 311

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79447694|ref|NP_567058.2| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|51968724|dbj|BAD43054.1| unknown protein [Arabidopsis thaliana] gi|332646183|gb|AEE79704.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|407078836|gb|AFS88949.1| OTU-containing deubiquitinating enzyme 4 isoform iia [Arabidopsis thaliana]

 Score =  296 bits (759), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 158/311 (50%), Positives = 201/311 (64%), Gaps = 46/311 (14%)

Query: 1   MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRT 60
           MI  + I  C++N +++    +  +G  + GV   G S   C+ L SG S+++Y G   +
Sbjct: 2   MICYSPITTCSRNAISI----KRHLGSRLYGVVAHGSSKFSCYSLLSGLSRRHYTGFRVS 57

Query: 61  ISSSSLNVLQPFQATCFSPGLTKPSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLI 120
           +S+                   +PS         +G+               G A  G+I
Sbjct: 58  VSN-------------------RPSS-----WHDKGLF--------------GFAYTGVI 79

Query: 121 CGLLVCYSSSK--AHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFR 178
             LLVCYSS+   A+A+++ +K+     +  S+ K+ +GK+VYTDYS+IGIPGDGRCLFR
Sbjct: 80  VSLLVCYSSTSQSAYADSSRDKDANNVHHHSSDGKFHNGKRVYTDYSIIGIPGDGRCLFR 139

Query: 179 AVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKP 238
           +VAHG CLR+GK AP   +QRELAD+LR +VADEFI+RR+ETEWF+EGDFD YV QIR P
Sbjct: 140 SVAHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQRRQETEWFVEGDFDTYVRQIRDP 199

Query: 239 HVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDA 298
           HVWGGEPEL MASHVL+MPITVYM D  AGGLISIAEYGQEYGK+ PIRVLYHGFGHYDA
Sbjct: 200 HVWGGEPELFMASHVLQMPITVYMKDDKAGGLISIAEYGQEYGKDDPIRVLYHGFGHYDA 259

Query: 299 LQNLGHEGGIS 309
           L  L HE   S
Sbjct: 260 L--LLHESKAS 268

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
TAIR|locus:2095748	317	AT3G57810 "AT3G57810" [Arabido	0.974	0.955	0.506	9.3e-75
TAIR|locus:504955906	234	AT2G38025 "AT2G38025" [Arabido	0.482	0.641	0.344	3.3e-15
ZFIN|ZDB-GENE-040426-974	293	otud6b "OTU domain containing	0.405	0.430	0.304	2e-07
MGI|MGI:1919451	294	Otud6b "OTU domain containing	0.401	0.425	0.288	1.9e-05
CGD|CAL0002605	323	orf19.1959 [Candida albicans (	0.411	0.396	0.283	0.00012
MGI|MGI:3644685	290	Otud6a "OTU domain containing	0.418	0.448	0.298	0.00016
UNIPROTKB|Q96G74	571	OTUD5 "OTU domain-containing p	0.382	0.208	0.259	0.00023
TAIR|locus:2099172	332	AT3G62940 [Arabidopsis thalian	0.414	0.388	0.295	0.00027
DICTYBASE|DDB_G0285907	537	DDB_G0285907 "OTU domain conta	0.372	0.216	0.305	0.00027
DICTYBASE|DDB_G0267906	438	DDB_G0267906 "OTU domain conta	0.385	0.273	0.270	0.00033

TAIR|locus:2095748 AT3G57810 "AT3G57810" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 160/316 (50%), Positives = 202/316 (63%)

Query:     1 MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRT 60
             MI  + I  C++N +++    +  +G  + GV   G S   C+ L SG S+++Y G   +
Sbjct:     2 MICYSPITTCSRNAISI----KRHLGSRLYGVVAHGSSKFSCYSLLSGLSRRHYTGFRVS 57

Query:    61 ISS--SSLNVLQPFQATCFSPGLTKPSMKMRL--LVPSQGV-LPKLKLNAGPIDWPKGCA 115
             +S+  SS +    F +   +     P  K+ +  L P   +   K++ N   +      A
Sbjct:    58 VSNRPSSWHDKGLFGSVLINRPTVAPKEKLEVSFLSPEANMKCSKIESNMRNLYCYSRFA 117

Query:   116 SAGLICGLLVCYSSSKXXXXXXXXXXXXXXXXX--LSNVKYSHGKKVYTDYSVIGIPGDG 173
               G+I  LLVCYSS+                     S+ K+ +GK+VYTDYS+IGIPGDG
Sbjct:   118 YTGVIVSLLVCYSSTSQSAYADSSRDKDANNVHHHSSDGKFHNGKRVYTDYSIIGIPGDG 177

Query:   174 RCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVS 233
             RCLFR+VAHG CLR+GK AP   +QRELAD+LR +VADEFI+RR+ETEWF+EGDFD YV 
Sbjct:   178 RCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQRRQETEWFVEGDFDTYVR 237

Query:   234 QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGF 293
             QIR PHVWGGEPEL MASHVL+MPITVYM D  AGGLISIAEYGQEYGK+ PIRVLYHGF
Sbjct:   238 QIRDPHVWGGEPELFMASHVLQMPITVYMKDDKAGGLISIAEYGQEYGKDDPIRVLYHGF 297

Query:   294 GHYDALQNLGHEGGIS 309
             GHYDAL  L HE   S
Sbjct:   298 GHYDAL--LLHESKAS 311

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:504955906 AT2G38025 "AT2G38025" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 60/174 (34%), Positives = 84/174 (48%)

Query:   150 SNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKV 209
             S++  S   K    Y+V  + GDGRCLFRA+  G     G    +   +R+ AD+LR  V
Sbjct:    62 SSMNRSPAAKKVEKYAVDRVKGDGRCLFRALVKGMAFNKGITL-NPQRERDDADELRMAV 120

Query:   210 ADEFIKRREETEWFIEG------DFDL--YVSQIRKPHVWGGEPELLMASHVLRMPITVY 261
              +      +E E + E       D  L  +  +I +   WGGE ELL+ S + + PI VY
Sbjct:   121 KEVICNDPKEREKYKEALVAITVDESLKRFCQRIGRHDFWGGESELLVLSKLCKQPIIVY 180

Query:   262 M----HDKDAG---GLISIAEYGQEY----GKEKP----IRVLYHGFGHYDALQ 300
             +    H +  G   G I I EYG E+    GK K     +R+LY G  HYD L+
Sbjct:   181 IPEHEHGRGGGYGPGFIPIQEYGSEFRGGWGKGKTNKNVVRLLYSGRNHYDLLR 234

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-974 otud6b "OTU domain containing 6B" [Danio rerio (taxid:7955)]

 Score = 142 (55.0 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 43/141 (30%), Positives = 68/141 (48%)

Query:   169 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVAD--EFIKRREETEWFIEG 226
             I  DG C++RAV H    R G       ++ + A  +R+   D   F+      + +   
Sbjct:   152 ISSDGHCMYRAVEHQLTER-GLALGLKELRDQTAQYMRSHADDFMPFLTNPNTGDMYTAE 210

Query:   227 DFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPI 286
             +F+ Y S +     WGG+ EL   S VL++PI V   D      I+I   G+EY K K I
Sbjct:   211 EFEKYCSDVADTAAWGGQLELKALSQVLQLPIEVIQADSPC---ITI---GEEYDKPK-I 263

Query:   287 RVLY--HGFG---HYDALQNL 302
              ++Y  H +G   HY++++ L
Sbjct:   264 TLIYMRHAYGLGEHYNSVEPL 284

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1919451 Otud6b "OTU domain containing 6B" [Mus musculus (taxid:10090)]

 Score = 125 (49.1 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 41/142 (28%), Positives = 69/142 (48%)

Query:   169 IPGDGRCLFRAVAHGACLRAGKPAPSV-SIQRELADDLRAKVAD--EFIKRREETEWFIE 225
             IP DG C++ A+     LR    A +V S++R+ A+ ++    D   F+      + +  
Sbjct:   153 IPSDGHCMYGALEDQ--LREQDCALTVASLRRQTAEYMQTHSDDFLPFLTNPSTGDMYTP 210

Query:   226 GDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKP 285
              +F  Y   I     WGG+ EL   SH+L+ PI +     DA  +I     G+EY +  P
Sbjct:   211 EEFGKYCDDIVNTAAWGGQLELRALSHILQTPIEILQ--ADAPPII----VGEEYPRN-P 263

Query:   286 IRVLY--HGFG---HYDALQNL 302
             + ++Y  H +G   HY+++  L
Sbjct:   264 LVLVYMRHAYGLGEHYNSVTRL 285

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0002605 orf19.1959 [Candida albicans (taxid:5476)]

 Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
 Identities = 42/148 (28%), Positives = 68/148 (45%)

Query:   169 IPGDGRCLFRAVAHGACLR----------AGKPAPSVSIQRELADDLRAKVADEFIKRRE 218
             I  DG CLF ++     +R            +  PS+   R+LA D      ++FI    
Sbjct:   182 IKPDGHCLFASIQDQLKVRHQDVEHLDHNGPEDVPSIDQLRKLAGDYIKSNQEDFIPFLI 241

Query:   219 ETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGG-LISIAEYG 277
             +       D D Y++++    +WG + E+L  S V   PI++YM    AG   ++I E+G
Sbjct:   242 DENTGELRDLDDYINELTTTAMWGSDMEILALSKVFNCPISIYM----AGASTLTINEHG 297

Query:   278 QEYGKEKPIRVLYHGFG---HYDALQNL 302
             Q    E  +    H FG   HY++L++L
Sbjct:   298 QL--PELKLGYYKHSFGLGEHYNSLRDL 323

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA

MGI|MGI:3644685 Otud6a "OTU domain containing 6A" [Mus musculus (taxid:10090)]

 Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
 Identities = 45/151 (29%), Positives = 69/151 (45%)

Query:   169 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVAD--EFIKRREETEWFIEG 226
             IP DG C++RA+               S++   A  +R  + D   F    E   ++   
Sbjct:   147 IPADGHCMYRAIQDQLVFSV----TIESLRYRTAYYMRKHIDDFLPFFTEPEAGNFYTRE 202

Query:   227 DFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPI 286
             DF  Y   I     WGG+ EL   SHVL+ PI V   +      I I   G+EY + KP+
Sbjct:   203 DFLRYCDDIVHNASWGGQLELRALSHVLQTPIEVVQANSPT---IVI---GEEYTR-KPV 255

Query:   287 RVLY-H---GFG-HYDALQNL---GHEGGIS 309
              ++Y H    FG HY++++ +   G  GG++
Sbjct:   256 TLVYLHYACDFGEHYNSVKPIEVAGAFGGMA 286

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q96G74 OTUD5 "OTU domain-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
 Identities = 34/131 (25%), Positives = 60/131 (45%)

Query:   172 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 231
             DG CLFRAVA             V   +++ + +R    D  +K  +    ++  DF  Y
Sbjct:   221 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 269

Query:   232 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEY-GQEYGKEKPIRVLY 290
             +++ RK +  G   E+   + +   P+ VY +      +  I  + G    +++PIRV Y
Sbjct:   270 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSY 329

Query:   291 HGFGHYDALQN 301
             H   HY+++ N
Sbjct:   330 HRNIHYNSVVN 340

GO:0006508 "proteolysis" evidence=IEA

GO:0071108 "protein K48-linked deubiquitination" evidence=IDA

GO:0070536 "protein K63-linked deubiquitination" evidence=IDA

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0032496 "response to lipopolysaccharide" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

TAIR|locus:2099172 AT3G62940 [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 0.00027, P = 0.00027
 Identities = 44/149 (29%), Positives = 66/149 (44%)

Query:   165 SVIGIPGDGRCLFRAVAHGACLRAGKPAP-SVSIQRELADDLRAKVADEFIKR-REETEW 222
             +V  I  DG CL+RAV +    R+G  +P +    RE+A     +   +F+     ETE 
Sbjct:   182 TVSEIKPDGHCLYRAVENQLANRSGGASPYTYQNLREMAASYMREHKTDFLPFFLSETEG 241

Query:   223 -----FIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG 277
                    E  F+ Y  ++     WG + EL   +H LR  I VY       G     E G
Sbjct:   242 DSNSGSAEERFEKYCREVESTAAWGSQLELGALTHCLRKHIKVY------SGSFPDVEMG 295

Query:   278 QEY--GKEKPIRVLYH--GFG---HYDAL 299
             +EY  G +  + + YH   FG   HY+++
Sbjct:   296 KEYRSGDDSSLMLSYHRHAFGLGEHYNSV 324

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

DICTYBASE|DDB_G0285907 DDB_G0285907 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 119 (46.9 bits), Expect = 0.00027, P = 0.00027
 Identities = 41/134 (30%), Positives = 62/134 (46%)

Query:   172 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 231
             DG CLFR+VA             +   +E+ + +R K  D     R+    FI  DF  Y
Sbjct:   229 DGNCLFRSVAD-----------QIYGDQEMHNTVREKCMDYMEAERDHFSQFITEDFADY 277

Query:   232 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY- 290
             +++ R   V+G   E+   + +   PI VY    D    I+I  +G  Y    PIR+ Y 
Sbjct:   278 IARKRTDKVFGNNTEMQAMAELFNRPIEVYSKTIDP---INIF-HGS-YKGNYPIRLSYL 332

Query:   291 HGFGHYDALQNLGH 304
             HG  HYD++ +L +
Sbjct:   333 HG-NHYDSIYDLNN 345

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0267906 DDB_G0267906 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 117 (46.2 bits), Expect = 0.00033, P = 0.00033
 Identities = 36/133 (27%), Positives = 64/133 (48%)

Query:   169 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQ-RELADDLRAKVADEFIKRREETEWFIEGD 227
             + GDG CLFR++A        + AP+   + RE       K  D F    ++ E+     
Sbjct:    69 VAGDGNCLFRSIADQL-----QDAPNEHRKYREAICKYIEKNKDMFAPFIDDEEF---ES 120

Query:   228 FDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIR 287
             F+ Y+ ++R+   WGG  E+  AS    + IT++  D+    +++   +  E  K K I 
Sbjct:   121 FEEYIQEMREDATWGGHVEIQAASLAYNVNITIHQMDQPRWEIVN--HFPPE--KNKTIH 176

Query:   288 VLYHGFGHYDALQ 300
             + YH   HY++++
Sbjct:   177 LSYHNDEHYNSVR 189

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBZ4	OTU_ARATH	No assigned EC number	0.5158	0.9742	0.9558	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	311
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	4e-26
COG5539	306	COG5539, COG5539, Predicted cysteine protease (OTU	2e-05

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score =   99 bits (249), Expect = 4e-26
 Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 14/132 (10%)

Query: 170 PGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFD 229
           PGDG CLF AV+              + ++EL D+LR  V +   + RE+ E F+E D +
Sbjct: 1   PGDGNCLFHAVSDQLGD---------AGRQELHDELREAVVEYLRENREDFEKFLEEDEN 51

Query: 230 LYVSQIRKPHVWGGEPELLMASHVLRMPITVYM-HDKDAGGLISIAEYGQEYGKEKPIRV 288
            Y   I K   WGG  E+   +H+LR+PI VY          I I        K+  IR+
Sbjct: 52  EYYKWISKDGAWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRL 111

Query: 289 LYHGF----GHY 296
            Y G      HY
Sbjct: 112 SYLGLEYTGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

>gnl|CDD|227826 COG5539, COG5539, Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 4/134 (2%)

Query: 169 IPGDGRCLFRAVAHGACLR-AGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGD 227
             GDG      ++    +R         S  R  +     +++  F     + E      
Sbjct: 176 SQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVL 235

Query: 228 FDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIR 287
           +D YV+++      G   E+   + +L+ P         A   I     G  +  EK   
Sbjct: 236 WDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTN---TASPSIKCNICGTGFVGEKDYY 292

Query: 288 VLYHGFGHYDALQN 301
                 GHY+  ++
Sbjct: 293 AHALATGHYNFGED 306

Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.98
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.9
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.74
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.48
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.43
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.2
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.89
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.75
PF05415	104	Peptidase_C36: Beet necrotic yellow vein furovirus	92.32

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=3.9e-35  Score=276.32  Aligned_cols=279  Identities=27%  Similarity=0.324  Sum_probs=197.0

Q ss_pred             CeeeccccccccceEEeccccccccccceeeeeecCCCceeeeecccCcccccccceeeEeecCCccccccccccccccc
Q 021504            1 MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPG   80 (311)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (311)
                      |++..++..|.+|...|.    +|-+.+-......+..+..|.+.. ++.|+.|.+....++.   -+-|++.+.++++.
T Consensus         2 ~~~~~~~~~~~~~e~iLa----RHr~E~keLq~ki~~mKk~a~k~~-k~~rK~~~~~~~~le~---el~qkH~kEL~~~~   73 (302)
T KOG2606|consen    2 MTCMDSEQDEESNEEILA----RHRRERKELQAKITSMKKAAPKGN-KKKRKELTEDIAKLEK---ELSQKHKKELEKLK   73 (302)
T ss_pred             cCCccchhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHhhhhcc-HHHHHHHHHHHHHHHh---HHHHHHHHHHHhhc
Confidence            678889999999999998    999999999999999999999887 8999999986555554   24579999999999


Q ss_pred             cc-------cCcceeeeeccCCcc-cccccCCC--ccccCC---CCCCcchheeceecccCchhhhhhhhccccCCcccc
Q 021504           81 LT-------KPSMKMRLLVPSQGV-LPKLKLNA--GPIDWP---KGCASAGLICGLLVCYSSSKAHAEAADEKEDGEEDY  147 (311)
Q Consensus        81 ~~-------~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (311)
                      ++       +..+...+..|-.++ +.+++..-  +.++-.   -+-.-.....-.+++.++..   -.+..        
T Consensus        74 ~~~~~e~~~~e~~~~s~l~~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~---~~~~~--------  142 (302)
T KOG2606|consen   74 LINESEVTPKENLIESVLSPIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLS---NQADA--------  142 (302)
T ss_pred             ccCccccCccccchhhhhcccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCch--------
Confidence            74       444555555555544 34444200  001100   01011111111122221110   00000        


Q ss_pred             cchhhcccccccccCCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhcccc-
Q 021504          148 DLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEG-  226 (311)
Q Consensus       148 ~~~~~~~~~g~~~~~gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fie~-  226 (311)
                      ............-..||.+++||+||+|||+||+|||..+++...+.+.||++.+++||.++.|++--..+..++++.+ 
T Consensus       143 k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~  222 (302)
T KOG2606|consen  143 KSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLGP  222 (302)
T ss_pred             hhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCH
Confidence            0001111222333468999999999999999999999999887778788888888888888777654334445555543 


Q ss_pred             -CHHHHHHHhcCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEc----CCC-cceeee
Q 021504          227 -DFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH----GFG-HYDALQ  300 (311)
Q Consensus       227 -dfdeYl~~M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yh----g~g-HYDSL~  300 (311)
                       +|++||++|++++.|||++||.|+|++|++||+||+.+    +  .+.+||++++.++||.|+||    +.| ||||+.
T Consensus       223 ~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~----~--p~~~~geey~kd~pL~lvY~rH~y~LGeHYNS~~  296 (302)
T KOG2606|consen  223 EDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQAD----G--PILEYGEEYGKDKPLILVYHRHAYGLGEHYNSVT  296 (302)
T ss_pred             HHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecC----C--CceeechhhCCCCCeeeehHHhHHHHHhhhcccc
Confidence             79999999999999999999999999999999999975    2  26789999987899999996    344 999998


Q ss_pred             cCCC
Q 021504          301 NLGH  304 (311)
Q Consensus       301 ~~~~  304 (311)
                      ....
T Consensus       297 ~~~n  300 (302)
T KOG2606|consen  297 PLKN  300 (302)
T ss_pred             cccc
Confidence            7654

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.90  E-value=3.2e-24  Score=174.89  Aligned_cols=112  Identities=39%  Similarity=0.689  Sum_probs=88.3

Q ss_pred             CCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHh-cChhhhhhccccCHHHHHHHhcCCCCcCCHHHHH
Q 021504          170 PGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFI-KRREETEWFIEGDFDLYVSQIRKPHVWGGEPELL  248 (311)
Q Consensus       170 pgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~-~n~d~fe~fie~dfdeYl~~M~k~gtWGG~lEL~  248 (311)
                      ||||||||||||+||+...+.       .+..|.+||+.++++|+ .+++.|++|+.++      +|+++++|||++||+
T Consensus         1 pgDGnClF~Avs~~l~~~~~~-------~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~   67 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGG-------SEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQ   67 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SS-------STTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHH
T ss_pred             CCCccHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHH
Confidence            799999999999999854311       13568999999999999 9999999998766      999999999999999


Q ss_pred             HHHHhcCCCEEEEeecCCCCCceEEEEcCC---CCCCCCeEEEEEcC-----CCcc
Q 021504          249 MASHVLRMPITVYMHDKDAGGLISIAEYGQ---EYGKEKPIRVLYHG-----FGHY  296 (311)
Q Consensus       249 AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~---e~~~~~pI~L~Yhg-----~gHY  296 (311)
                      |+|++|+++|+||+...  +.......+..   +....++|.++|++     .+||
T Consensus        68 a~a~~~~~~I~v~~~~~--~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   68 ALANVLNRPIIVYSSSD--GDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             HHHHHHTSEEEEECETT--TBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             HHHHHhCCeEEEEEcCC--CCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence            99999999999998632  22222222222   23457899999997     7798

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=3.1e-18  Score=159.83  Aligned_cols=126  Identities=25%  Similarity=0.384  Sum_probs=109.8

Q ss_pred             CcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhh-hhccccCHHHHHHHhcCCCCc
Q 021504          163 DYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREET-EWFIEGDFDLYVSQIRKPHVW  241 (311)
Q Consensus       163 gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~f-e~fie~dfdeYl~~M~k~gtW  241 (311)
                      -+.++.||.|++|||+||++.+....+.          -..+||+.++..+..|++.| +++++..-.+||.||+++..|
T Consensus       109 vl~~~vvp~DNSCLF~ai~yv~~k~~~~----------~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsW  178 (307)
T KOG3288|consen  109 VLSRRVVPDDNSCLFTAIAYVIFKQVSN----------RPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSW  178 (307)
T ss_pred             eeEEEeccCCcchhhhhhhhhhcCccCC----------CcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHcccccc
Confidence            5888999999999999999988742211          13689999999999999988 678889999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCC
Q 021504          242 GGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGH  304 (311)
Q Consensus       242 GG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~~~~  304 (311)
                      ||-+||..||+.|++.|.|++.+  +   ..|..||++.+....+.|.|.|. |||+|.+...
T Consensus       179 GGaIElsILS~~ygveI~vvDiq--t---~rid~fged~~~~~rv~llydGI-HYD~l~m~~~  235 (307)
T KOG3288|consen  179 GGAIELSILSDYYGVEICVVDIQ--T---VRIDRFGEDKNFDNRVLLLYDGI-HYDPLAMNEF  235 (307)
T ss_pred             CceEEeeeehhhhceeEEEEecc--e---eeehhcCCCCCCCceEEEEeccc-ccChhhhccC
Confidence            99999999999999999999764  2   35889998877788999999998 9999988764

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.48  E-value=4.7e-13  Score=123.18  Aligned_cols=99  Identities=21%  Similarity=0.301  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHhcChhhhhhccc----cCHHHHH-HHhcCCCCcCCHHHHHHHHHhcCCCEEEEeecCC-CCCceEEE
Q 021504          201 LADDLRAKVADEFIKRREETEWFIE----GDFDLYV-SQIRKPHVWGGEPELLMASHVLRMPITVYMHDKD-AGGLISIA  274 (311)
Q Consensus       201 ~h~eLR~~vvdy~~~n~d~fe~fie----~dfdeYl-~~M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~-s~g~i~I~  274 (311)
                      ....+|-.+..||..|.++|++|++    .+|++|| +.+...+.-.+|+.+.|||++|+++|.|+..|+. ++..+...
T Consensus       138 iV~flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~  217 (244)
T PF10275_consen  138 IVIFLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRH  217 (244)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEE
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccc
Confidence            3457887888888899999999997    5699999 4677788999999999999999999999999875 44444555


Q ss_pred             EcCCCC-CCCCeEEEEEcCCCcceeee
Q 021504          275 EYGQEY-GKEKPIRVLYHGFGHYDALQ  300 (311)
Q Consensus       275 ~yG~e~-~~~~pI~L~Yhg~gHYDSL~  300 (311)
                      .+.++. +..+.|.|+|..+ |||.++
T Consensus       218 ~~~~~~~~~~~~i~LLyrpg-HYdIly  243 (244)
T PF10275_consen  218 EFPPDNESQEPQITLLYRPG-HYDILY  243 (244)
T ss_dssp             EES-SSTTSS-SEEEEEETB-EEEEEE
T ss_pred             cCCCccCCCCCEEEEEEcCC-cccccc
Confidence            664221 3467899999885 999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=9.9e-14  Score=136.21  Aligned_cols=94  Identities=26%  Similarity=0.348  Sum_probs=84.1

Q ss_pred             cccCCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhccccCHHHHHHHhcCC
Q 021504          159 KVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKP  238 (311)
Q Consensus       159 ~~~~gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fie~dfdeYl~~M~k~  238 (311)
                      ....|+.++.|.+||||+|||+|+|+|.+           ++.|+..|+++++++..+++.|+.|+.++|.+|++.++++
T Consensus       213 ~~~~g~e~~Kv~edGsC~fra~aDQvy~d-----------~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~  281 (371)
T KOG2605|consen  213 KKHFGFEYKKVVEDGSCLFRALADQVYGD-----------DEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRAD  281 (371)
T ss_pred             HHHhhhhhhhcccCCchhhhccHHHhhcC-----------HHHHHHHHHHHHHHHhhcccccccccccchhhcccccccC
Confidence            34468999999999999999999999953           4789999999999999999999999999999999999999


Q ss_pred             CCcCCHHHHHHHHH---hcCCCEEEEee
Q 021504          239 HVWGGEPELLMASH---VLRMPITVYMH  263 (311)
Q Consensus       239 gtWGG~lEL~AlA~---ll~~~I~Vy~~  263 (311)
                      +.||+|+|+||+|.   ....++.+.+.
T Consensus       282 ~~~gnhie~Qa~a~~~~~~~~~~~~~~~  309 (371)
T KOG2605|consen  282 GEPGNHIEQQAAADIYEEIEKPLNITSF  309 (371)
T ss_pred             CCCcchHHHhhhhhhhhhccccceeecc
Confidence            99999999999995   55566666654

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=8.5e-11  Score=108.88  Aligned_cols=98  Identities=19%  Similarity=0.251  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHHHhcC-CCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcC
Q 021504          201 LADDLRAKVADEFIKRREETEWFIEG--DFDLYVSQIRK-PHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG  277 (311)
Q Consensus       201 ~h~eLR~~vvdy~~~n~d~fe~fie~--dfdeYl~~M~k-~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG  277 (311)
                      .+.++|-.+..+++.|+|+|++|+++  ++++||.+--. ..+-.||++|.||++.+++.|+|...|+.+++...-+.|.
T Consensus       155 iV~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp  234 (256)
T KOG3991|consen  155 IVMYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP  234 (256)
T ss_pred             HHHHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc
Confidence            45678888888899999999999976  69999986433 3667999999999999999999999888765432222232


Q ss_pred             CCCCCCCeEEEEEcCCCcceeeec
Q 021504          278 QEYGKEKPIRVLYHGFGHYDALQN  301 (311)
Q Consensus       278 ~e~~~~~pI~L~Yhg~gHYDSL~~  301 (311)
                      +  +..+.|.|+|.. ||||.|+.
T Consensus       235 e--~s~P~I~LLYrp-GHYdilY~  255 (256)
T KOG3991|consen  235 E--ASAPEIYLLYRP-GHYDILYK  255 (256)
T ss_pred             c--ccCceEEEEecC-CccccccC
Confidence            2  356789999977 49999874

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=2.2e-10  Score=109.06  Aligned_cols=125  Identities=15%  Similarity=0.044  Sum_probs=83.5

Q ss_pred             CcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhcc-c------cCHHHHHHHh
Q 021504          163 DYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFI-E------GDFDLYVSQI  235 (311)
Q Consensus       163 gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fi-e------~dfdeYl~~M  235 (311)
                      .+.--+++|||+|+|.+|++||..+.-.    -.+  +....+|-.-..|...+...|+.+. +      -.|++|++.|
T Consensus       170 ~i~k~d~~~dG~ieia~iS~~l~v~i~~----Vdv--~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~  243 (306)
T COG5539         170 WIVKPDSQGDGCIEIAIISDQLPVRIHV----VDV--DKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEV  243 (306)
T ss_pred             hhhccccCCCceEEEeEeccccceeeee----eec--chhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhh
Confidence            4555789999999999999999765310    111  1123344444444444455565553 1      2699999999


Q ss_pred             cCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEE--c--CCCcceeee
Q 021504          236 RKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY--H--GFGHYDALQ  300 (311)
Q Consensus       236 ~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Y--h--g~gHYDSL~  300 (311)
                      +.+..||+.+|++|||++|++|+++++..    ++  +..|+.= +..-..-+.|  |  +.||||+++
T Consensus       244 ~~~a~~g~~~ei~qLas~lk~~~~~~nT~----~~--~ik~n~c-~~~~~~e~~~~~Ha~a~GH~n~~~  305 (306)
T COG5539         244 LFDASDGITIEIQQLASLLKNPHYYTNTA----SP--SIKCNIC-GTGFVGEKDYYAHALATGHYNFGE  305 (306)
T ss_pred             cccccccchHHHHHHHHHhcCceEEeecC----Cc--eEEeecc-ccccchhhHHHHHHHhhcCccccC
Confidence            99999999999999999999999999753    33  2334321 1122344455  4  557999874

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=3e-09  Score=101.39  Aligned_cols=114  Identities=28%  Similarity=0.266  Sum_probs=95.4

Q ss_pred             eeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhcc-ccCHHHHHHHhcCCCCcC-CHH
Q 021504          168 GIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFI-EGDFDLYVSQIRKPHVWG-GEP  245 (311)
Q Consensus       168 ~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fi-e~dfdeYl~~M~k~gtWG-G~l  245 (311)
                      +.-.|.+|+|+|.+..++.             ....+||+.|..+..+|+|.|.+.+ +-+.-+|+.++.++..|| |++
T Consensus       116 p~~~d~srl~q~~~~~l~~-------------asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~i  182 (306)
T COG5539         116 PGQDDNSRLFQAERYSLRD-------------ASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCI  182 (306)
T ss_pred             CCCCchHHHHHHHHhhhhh-------------hhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceE
Confidence            4446899999999987752             2578999999999999999998776 558999999999999999 999


Q ss_pred             HHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeec
Q 021504          246 ELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQN  301 (311)
Q Consensus       246 EL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~  301 (311)
                      |+.++++.|++.|+|...+.+     ....|++.. ....+.+.|.|. |||....
T Consensus       183 eia~iS~~l~v~i~~Vdv~~~-----~~dr~~~~~-~~q~~~i~f~g~-hfD~~t~  231 (306)
T COG5539         183 EIAIISDQLPVRIHVVDVDKD-----SEDRYNSHP-YVQRISILFTGI-HFDEETL  231 (306)
T ss_pred             EEeEeccccceeeeeeecchh-----HHhhccCCh-hhhhhhhhhccc-ccchhhh
Confidence            999999999999999988743     246677653 346688999997 9998763

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.32  E-value=0.42  Score=39.41  Aligned_cols=95  Identities=17%  Similarity=0.275  Sum_probs=56.0

Q ss_pred             eCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhccccCHHHHHHHhcC--CCCcCCHHH
Q 021504          169 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRK--PHVWGGEPE  246 (311)
Q Consensus       169 IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fie~dfdeYl~~M~k--~gtWGG~lE  246 (311)
                      +..|+|||--||+..|...              -+.+...    |..+.        ...+.|+.++++  |.||-|   
T Consensus         3 ~sR~NNCLVVAis~~L~~T--------------~e~l~~~----M~An~--------~~i~~y~~W~r~~~~STW~D---   53 (104)
T PF05415_consen    3 ASRPNNCLVVAISECLGVT--------------LEKLDNL----MQANV--------STIKKYHTWLRKKRPSTWDD---   53 (104)
T ss_pred             ccCCCCeEeehHHHHhcch--------------HHHHHHH----HHhhH--------HHHHHHHHHHhcCCCCcHHH---
Confidence            5679999999999987521              1111111    22221        236788888765  789955   


Q ss_pred             HHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEE----cCCCccee
Q 021504          247 LLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY----HGFGHYDA  298 (311)
Q Consensus       247 L~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Y----hg~gHYDS  298 (311)
                      ..++|+.+++.|+|--....  + .....+++..   ....++|    .+.|||-+
T Consensus        54 C~mFA~~LkVsm~vkV~~~~--~-~~l~~~~d~~---~s~v~~~~~~Ke~dGHF~a  103 (104)
T PF05415_consen   54 CRMFADALKVSMQVKVLSDK--P-YDLLYFVDGA---VSVVTLHLEGKESDGHFIA  103 (104)
T ss_pred             HHHHHHhheeEEEEEEcCCC--C-ceeeEeecCc---cceehhhhhccccCCceec
Confidence            46899999999988443322  2 1233344432   2334455    26789854

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	311
3tmp_A	184	The Catalytic Domain Of Human Deubiquitinase Duba I		7e-07
3tmo_A	184	The Catalytic Domain Of Human Deubiquitinase Duba L		8e-06
3pfy_A	185	The Catalytic Domain Of Human Otud5 Length = 185		4e-05

>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde Length = 184

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 172 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 231
           DG CLFRAVA             V   +++ + +R    D  +K  +    ++  DF  Y
Sbjct: 54  DGACLFRAVA-----------DQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 102
Query: 232 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEY-GQEYGKEKPIRVLY 290
           +++ RK +  G   E+   + +   P+ VY +      +  I  + G    +++PIRV Y
Sbjct: 103 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSY 162
Query: 291 HGFGHYDALQN 301
           H   HY+++ N
Sbjct: 163 HRNIHYNSVVN 173

>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba Length = 184

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Query: 172 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 231
           DG CLFRAVA             V   ++  + +R    D   K  +    ++  DF  Y
Sbjct: 54  DGACLFRAVA-----------DQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTY 102
Query: 232 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEY-GQEYGKEKPIRVLY 290
           +++ RK +  G   E    +     P+ VY +      +  I  + G    +++PIRV Y
Sbjct: 103 INRKRKNNCHGNHIEXQAXAEXYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSY 162
Query: 291 HGFGHYDALQN 301
           H   HY+++ N
Sbjct: 163 HRNIHYNSVVN 173

>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5 Length = 185

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 172 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 231
           DG CLFRAVA     +         + R+   D   K AD F         ++  DF  Y
Sbjct: 67  DGACLFRAVAD----QVYGDQDXHEVVRKHCXDYLXKNADYFSN-------YVTEDFTTY 115
Query: 232 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 291
           +++ RK +  G   E    +     P+ VY +  +         +G    +++PIRV YH
Sbjct: 116 INRKRKNNCHGNHIEXQAXAEXYNRPVEVYQYSTEPINTF----HGIHQNEDEPIRVSYH 171
Query: 292 GFGHYDALQN 301
              HY+++ N
Sbjct: 172 RNIHYNSVVN 181

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	311
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	3e-38
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	2e-34
3pfy_A	185	OTU domain-containing protein 5; structural genomi	1e-31
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	3e-27
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	7e-05
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	6e-04

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score =  133 bits (335), Expect = 3e-38
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 9/147 (6%)

Query: 164 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWF 223
           + ++  PGDG C + ++A        K   S    + L +    K   E     E     
Sbjct: 31  FEIVRQPGDGNCFYHSIAE--LTMPNKTDHSYHYIKRLTESAARKYYQE-----EPEARL 83

Query: 224 IEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKE 283
           +    + Y+ ++   + WG   E  M +  + + I ++        + +  ++G      
Sbjct: 84  VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAAS-DEVEAGIKFGDGDVF- 141

Query: 284 KPIRVLYHGFGHYDALQNLGHEGGISK 310
             + +L+ G  H+DAL+ L      ++
Sbjct: 142 TAVNLLHSGQTHFDALRILPQFETDTR 168

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score =  124 bits (311), Expect = 2e-34
 Identities = 25/147 (17%), Positives = 55/147 (37%), Gaps = 9/147 (6%)

Query: 164 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWF 223
           + ++  PGDG C + ++A        K   S    + L        A ++ +  E     
Sbjct: 31  FEIVRQPGDGNCFYHSIAE--LTMPNKTDHSYHYIKRL----TESAARKYYQE-EPEARL 83

Query: 224 IEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKE 283
           +    + Y+ ++   + WG   E  M +  + + I ++     A   +       +    
Sbjct: 84  VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIW--TVAASDEVEAGIKFGDGDVF 141

Query: 284 KPIRVLYHGFGHYDALQNLGHEGGISK 310
             + +L+ G  H+DAL+ L      ++
Sbjct: 142 TAVNLLHSGQTHFDALRILPQFETDTR 168

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score =  115 bits (289), Expect = 1e-31
 Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 16/179 (8%)

Query: 127 YSSSKAHAEAADEKE-DGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGAC 185
           Y+S   +  AA   E       +     +    +    + +  +  DG CLFRAVA    
Sbjct: 21  YNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQ-- 78

Query: 186 LRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEP 245
                    V   +++ + +R    D  +K  +    ++  DF  Y+++ RK +  G   
Sbjct: 79  ---------VYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHI 129

Query: 246 ELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGH 304
           E+   + +   P+ VY +  +         +G    +++PIRV YH   HY+++ N   
Sbjct: 130 EMQAMAEMYNRPVEVYQYSTEPINTF----HGIHQNEDEPIRVSYHRNIHYNSVVNPNK 184

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score =  105 bits (262), Expect = 3e-27
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 20/133 (15%)

Query: 169 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREE-TEWFIEGD 227
           +  D  CLF A+A+   +           +++   DLR  V+ E +    +  +  ++  
Sbjct: 25  VLDDNSCLFHAIAY--GIF----------KQDSVRDLREMVSKEVLNNPVKFNDAILDKP 72

Query: 228 FDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIR 287
              Y   I K   WGG  E+ + S  L + I V   D      + I ++ ++      I 
Sbjct: 73  NKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDA-----VKIEKFNEDKFD-NYIL 126

Query: 288 VLYHGFGHYDALQ 300
           +L++G  HYD+L 
Sbjct: 127 ILFNG-IHYDSLT 138

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 205 LRAKVADEFIKRREETEWFIEGD--FDLYVSQ-IRKPHVWGGEPELLMASHVLRMPITVY 261
           LR   +    +  +  E FIEG      +  Q +           ++  +  L + I V 
Sbjct: 138 LRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVE 197

Query: 262 MHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDAL 299
             D+  GG  +   + +  G E  + +LY   GHYD L
Sbjct: 198 YMDRGEGGTTNPHIFPE--GSEPKVYLLYRP-GHYDIL 232

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 5e-06
 Identities = 44/263 (16%), Positives = 72/263 (27%), Gaps = 83/263 (31%)

Query: 53  NYAGISRTISSSSLNVLQP------FQA-TCFSPGLTKPSMKMRLLVPSQGVLPKLKLNA 105
           N   ++  I SS LNVL+P      F   + F P            +P+  +L  +    
Sbjct: 351 NCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPS---------AHIPTI-LLSLI---- 395

Query: 106 GPIDWPKG-----------CASAGLI--------CGLLVCYSSSKAHAEAADEKEDGEED 146
               W                   L+          +   Y   K            E +
Sbjct: 396 ----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL---------ENE 442

Query: 147 YDLSNV---KYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELAD 203
           Y L       Y+  K  +    +I    D         H   L+  +    +++ R +  
Sbjct: 443 YALHRSIVDHYNIPKT-FDSDDLIPPYLDQYFYSHIGHH---LKNIEHPERMTLFRMVFL 498

Query: 204 DLRAKVADEFIK---RREETEWFIEG-------DFDLYVSQIRKPHVWGGEPELLMAS-- 251
           D R      F++   R + T W   G           Y   I        + E L+ +  
Sbjct: 499 DFR------FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND---PKYERLVNAIL 549

Query: 252 HVLRMPITVYMHDKDAGGLISIA 274
             L       +  K    L+ IA
Sbjct: 550 DFLPKIEENLICSKYT-DLLRIA 571

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens} Length = 454

 Score = 43.2 bits (101), Expect = 7e-05
 Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 40/160 (25%)

Query: 171 GDGRCLFRAVAHGACLRA-GKPAPSVSIQRELADDLRAKVADEFIKRR------------ 217
             G CL             G       +++ L D L       +   R            
Sbjct: 196 TAGDCLL----DSVLQATWGIYDKDSVLRKALHDSLHD--CSHWFYTRWKDWESWYSQSF 249

Query: 218 ------EETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVY---MHDKDAG 268
                  E +W  + D+   +S   +P     +  + + +H+LR PI VY    +    G
Sbjct: 250 GLHFSLREEQW--QEDWAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRG 307

Query: 269 GLISIAEYG---------QEYGKEKPIRVLYHGFGHYDAL 299
             +    +          Q +  + PI + Y   GH+ AL
Sbjct: 308 ETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR-GHFSAL 346

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A Length = 390

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 26/166 (15%), Positives = 47/166 (28%), Gaps = 41/166 (24%)

Query: 171 GDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEW----FIEG 226
           GDG CL  A +       G     + +++ L   L+      F  R +        F+E 
Sbjct: 119 GDGNCLMHATSQYM---WGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVET 175

Query: 227 DFDLYVSQIRK--------------------PHVWGGEPELLMASHVLRMPITVY----M 262
                                           +    E  + +  ++LR PI V     +
Sbjct: 176 GLCYDTRNWNDEWDNLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKML 235

Query: 263 HDKDAGGLISIAEYG---------QEYGKEKPIRVLYHGFGHYDAL 299
              ++G   +  + G          +     PI + Y    H+  L
Sbjct: 236 RSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDS-HHFVPL 280

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	311
3pfy_A	185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.98
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.87
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.79
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.78
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.77
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.66
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.25
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	96.34

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=100.00  E-value=3.8e-36  Score=267.68  Aligned_cols=141  Identities=24%  Similarity=0.432  Sum_probs=103.3

Q ss_pred             chhhcccccccccCCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhccccCH
Q 021504          149 LSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDF  228 (311)
Q Consensus       149 ~~~~~~~~g~~~~~gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fie~df  228 (311)
                      +.+..|...+....||.+++||+||||||||||+||+   |.        ++.|.+||+.+++||++|+++|++|++++|
T Consensus        44 ~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~---g~--------~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~  112 (185)
T 3pfy_A           44 QQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVY---GD--------QDMHEVVRKHCMDYLMKNADYFSNYVTEDF  112 (185)
T ss_dssp             HHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHH---SC--------GGGHHHHHHHHHHHHHHTHHHHTTCC----
T ss_pred             HHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHh---CC--------chHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            4455677777667899999999999999999999999   33        356899999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCC
Q 021504          229 DLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGH  304 (311)
Q Consensus       229 deYl~~M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~~~~  304 (311)
                      ++||++|+++++|||++||+|||++|+++|.||+.+.   .++.+. .|.+.+..++|+|+||+.+|||||+.|.+
T Consensus       113 e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~---~~i~i~-~g~~~~~~~~I~L~Y~~~~HYnSv~~p~~  184 (185)
T 3pfy_A          113 TTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYST---EPINTF-HGIHQNEDEPIRVSYHRNIHYNSVVNPNK  184 (185)
T ss_dssp             -------------CCHHHHHHHHHHHTSCEEEESSCS---SCSEEE-CTTSCCTTSCEEEEEETTTEEEEEECC--
T ss_pred             HHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCC---CCeEEe-cCccCCCCCEEEEEECCCCCcccccCCCC
Confidence            9999999999999999999999999999999999752   233332 25444567899999998889999998864

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.98  E-value=8.4e-33  Score=250.05  Aligned_cols=121  Identities=28%  Similarity=0.426  Sum_probs=106.7

Q ss_pred             CCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhh-hhccccCHHHHHHHhcCCCC
Q 021504          162 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREET-EWFIEGDFDLYVSQIRKPHV  240 (311)
Q Consensus       162 ~gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~f-e~fie~dfdeYl~~M~k~gt  240 (311)
                      .+|.+++||+||||||||||+|| ..   +        ..|.+||+.+++||.+|+++| +.|++++|++||++|+++++
T Consensus        18 ~~l~~~~i~~DGnCLFrAva~qL-~~---~--------~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~   85 (212)
T 3by4_A           18 NVLSVHPVLDDNSCLFHAIAYGI-FK---Q--------DSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMES   85 (212)
T ss_dssp             SEEEEECCCCSTTHHHHHHHHHH-HS---S--------CCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTS
T ss_pred             CCeEEEEeCCCCchHHHHHHHHh-CC---c--------hHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCE
Confidence            46999999999999999999999 42   1        347899999999999999999 47778999999999999999


Q ss_pred             cCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeec
Q 021504          241 WGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQN  301 (311)
Q Consensus       241 WGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~  301 (311)
                      |||++||+|||++|+++|.||+.+   .++  +..||++. ..++|+|+|++ +|||||+.
T Consensus        86 WGg~iEL~Als~~~~~~I~V~~~~---~~~--~~~~~~~~-~~~~I~L~Y~g-~HYdsl~~  139 (212)
T 3by4_A           86 WGGAIEIGIISDALAVAIYVVDID---AVK--IEKFNEDK-FDNYILILFNG-IHYDSLTM  139 (212)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEEETT---TTE--EEEESTTT-CSEEEEEEECS-SCEEEEEE
T ss_pred             EccHHHHHHHHHHHCCCEEEEECC---CCC--eEEeCCCC-CCCeEEEEEcC-CcceEEec
Confidence            999999999999999999999974   233  56788765 56899999996 59999998

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.97  E-value=1e-31  Score=238.72  Aligned_cols=140  Identities=16%  Similarity=0.301  Sum_probs=113.2

Q ss_pred             CCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhccccCHHHHHHHhcCCCCc
Q 021504          162 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVW  241 (311)
Q Consensus       162 ~gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fie~dfdeYl~~M~k~gtW  241 (311)
                      .+|.+..||+||||||||||+||+.+  .+.+.   .+..|.+||+.+++||.+|+++  .+++++|++||++|+++++|
T Consensus        29 ~~~~v~rv~gDGnCLFrAva~qL~~~--~~~~~---~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~W  101 (185)
T 3phx_A           29 DYFEIVRQPGDGNCFYHSIAELTMPN--KTDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEW  101 (185)
T ss_dssp             HHEEEECCCSSTTHHHHHHHHHHSTT--CCTTT---HHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCC
T ss_pred             cCeEEEccCCCCchHHHHHHHHHhCC--Cccch---hhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCcc
Confidence            35889999999999999999999842  12111   1345999999999999999988  45789999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCCCCCCCC
Q 021504          242 GGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISK  310 (311)
Q Consensus       242 GG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~~~~~~p~~~  310 (311)
                      ||++||+|+|++|+++|+||+.+.+. +++.+..||++. ..++|+|+|++.+|||+|+...+..++.+
T Consensus       102 Gg~iEL~Als~~~~v~I~V~~~d~~~-~~~~i~~f~~~~-~~~~I~L~Y~g~~HYdsl~~~~~~~~~~~  168 (185)
T 3phx_A          102 GSTLEASMLAKEMGITIIIWTVAASD-EVEAGIKFGDGD-VFTAVNLLHSGQTHFDALRILPQFETDTR  168 (185)
T ss_dssp             CBHHHHHHHHHHHCCCEEEEEC--CC-BCCEEEEESSCC-TTTSEEEEEETTTEEEEEEECGGGC----
T ss_pred             CcHHHHHHHHHHHCCcEEEEEecCCC-CceEEEEcCCCC-CCCEEEEEECCCcCchhceECCCCCCCCc
Confidence            99999999999999999999987442 234567888764 36899999999779999999887776654

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.97  E-value=7.1e-31  Score=239.27  Aligned_cols=140  Identities=16%  Similarity=0.298  Sum_probs=117.1

Q ss_pred             CCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhccccCHHHHHHHhcCCCCc
Q 021504          162 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVW  241 (311)
Q Consensus       162 ~gL~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fie~dfdeYl~~M~k~gtW  241 (311)
                      .+|.++.||||||||||||++||+.+  .+.+.   .+..|.+||+.+++||.+|+++  .+++++|++||++|+++++|
T Consensus        29 ~~~~V~rvpgDGnCLFrAVs~qL~~~--~~~~~---~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~W  101 (219)
T 3phu_A           29 DYFEIVRQPGDGNCFYHSIAELTMPN--KTDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEW  101 (219)
T ss_dssp             HHEEEECCCCSSCHHHHHHHHHHCTT--CCTTT---HHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCC
T ss_pred             cceEEEccCCCCchHHHHHHHHHhCC--Cccch---hhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCcc
Confidence            35899999999999999999999842  12111   1345999999999999999988  45789999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCCCCCCCC
Q 021504          242 GGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISK  310 (311)
Q Consensus       242 GG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~~~~~~~p~~~  310 (311)
                      ||++||+|+|++|+++|+||+.+.+ +..+.+..||++.. .++|+|+|++.+|||+|+...+..+.++
T Consensus       102 GG~iEL~AlS~~~~v~I~V~~~d~~-g~~~~i~~fge~~~-~~~I~L~Y~g~~HYdSL~~~~d~~~~~~  168 (219)
T 3phu_A          102 GSTLEASMLAKEMGITIIIWTVAAS-DEVEAGIKFGDGDV-FTAVNLLHSGQTHFDALRILPQFETDTR  168 (219)
T ss_dssp             CCHHHHHHHHHHTTCCEEEEEESSS-SBEEEEEEESSCCT-TTSEEEEEETTTEEEEEEECTTTCCSCC
T ss_pred             CCHHHHHHHHHHhCCCEEEEEecCC-CCceeEEEecCCCC-CCeEEEEECCCcCchhheECCCCCCCCC
Confidence            9999999999999999999998743 23455778887653 6899999999779999999988776654

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.87  E-value=6e-22  Score=181.40  Aligned_cols=99  Identities=15%  Similarity=0.216  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhcCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcC
Q 021504          201 LADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG  277 (311)
Q Consensus       201 ~h~eLR~~vvdy~~~n~d~fe~fie~--dfdeYl~-~M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG  277 (311)
                      ....||..++.||..|+++|++|+++  +|++||+ .++.+++|||++||+|||++|+++|.|++.|+.. +.+....|.
T Consensus       131 iv~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~-~~~~~~~~~  209 (234)
T 1tff_A          131 IVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFP  209 (234)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCC
T ss_pred             HHHHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCC-CccccccCC
Confidence            45779999999999999999999976  7999999 8999999999999999999999999999987553 223233454


Q ss_pred             CCCCCCCeEEEEEcCCCcceeeecCC
Q 021504          278 QEYGKEKPIRVLYHGFGHYDALQNLG  303 (311)
Q Consensus       278 ~e~~~~~pI~L~Yhg~gHYDSL~~~~  303 (311)
                      +  +..+.|+|+|++ ||||+|+..+
T Consensus       210 ~--~~~~~I~LlY~p-gHYdily~~~  232 (234)
T 1tff_A          210 E--AATPSVYLLYKT-SHYNILYAAD  232 (234)
T ss_dssp             C--CSSCSEEEEEET-TEEEEEEECC
T ss_pred             C--CCCCeEEEEECC-CCceecccCC
Confidence            3  245779999997 4999998653

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.79  E-value=4.6e-19  Score=166.99  Aligned_cols=103  Identities=16%  Similarity=0.107  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhcCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEE-
Q 021504          200 ELADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAE-  275 (311)
Q Consensus       200 ~~h~eLR~~vvdy~~~n~d~fe~fie~--dfdeYl~-~M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~-  275 (311)
                      ....+||..++.||+.|+++|++|+.+  ++++||+ +++.+++|||++||+|||++|+++|.|...|+..+..+..+. 
T Consensus       168 ~iv~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~  247 (284)
T 4dhi_B          168 YILMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYD  247 (284)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEE
T ss_pred             HHHHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCccccc
Confidence            345689999999999999999999965  7999998 899999999999999999999999999998875544333334 


Q ss_pred             cCCCC-CCCCeEEEEEcCCCcceeeecCC
Q 021504          276 YGQEY-GKEKPIRVLYHGFGHYDALQNLG  303 (311)
Q Consensus       276 yG~e~-~~~~pI~L~Yhg~gHYDSL~~~~  303 (311)
                      |.++. ...+.|+|+|.. ||||.|+..+
T Consensus       248 fp~~~~~~~p~I~LLYrp-gHYDILY~~~  275 (284)
T 4dhi_B          248 IPSDDQQIAPEITLLYRP-GHYDVIYKKD  275 (284)
T ss_dssp             ESCCCSCCCCSEEEEEET-TEEEEEEECC
T ss_pred             CCCCCCCCCCEEEEeecC-CCccccccCC
Confidence            52221 123679999999 5999998654

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.78  E-value=1.1e-18  Score=170.14  Aligned_cols=97  Identities=24%  Similarity=0.361  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhcCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcC
Q 021504          201 LADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG  277 (311)
Q Consensus       201 ~h~eLR~~vvdy~~~n~d~fe~fie~--dfdeYl~-~M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG  277 (311)
                      ....||..+..||+.|+++|++|+++  ++++||+ ++...++||||+||+|||+.|+++|.|+..|+..++.+....|+
T Consensus       299 iv~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~  378 (399)
T 4ddg_A          299 LVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP  378 (399)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETT
T ss_pred             HHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCC
Confidence            46679999999999999999999976  6999999 99999999999999999999999999998886544444445564


Q ss_pred             CCCCCCCeEEEEEcCCCcceeee
Q 021504          278 QEYGKEKPIRVLYHGFGHYDALQ  300 (311)
Q Consensus       278 ~e~~~~~pI~L~Yhg~gHYDSL~  300 (311)
                      +  +..+.|+|+|.. ||||.|+
T Consensus       379 ~--~~~~~I~LLYrP-gHYDiLY  398 (399)
T 4ddg_A          379 E--GSEPKVYLLYRP-GHYDILY  398 (399)
T ss_dssp             T--TCCCCCEEEEET-BEEEEEE
T ss_pred             C--CCCCEEEEEEcC-CccccCC
Confidence            3  246789999976 5999986

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.77  E-value=1.5e-18  Score=158.66  Aligned_cols=114  Identities=20%  Similarity=0.270  Sum_probs=97.8

Q ss_pred             CCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhcCCCCcCCHHHHH
Q 021504          172 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELL  248 (311)
Q Consensus       172 DGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe~fie~--dfdeYl~-~M~k~gtWGG~lEL~  248 (311)
                      ||+||++++.+|...            ......||..++.||..|+++|++|+++  +|++||+ .++.+++||||+||+
T Consensus       117 ~~~~L~~~fndq~~s------------~~~v~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~  184 (234)
T 2zfy_A          117 SVADLLASFNDQSTS------------DYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHII  184 (234)
T ss_dssp             CHHHHHHHHTSHHHH------------HHHHHHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHH
T ss_pred             CHHHHHHHHHhhccc------------hHHHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHH
Confidence            999999999999752            2568899999999999999999999976  7999997 699999999999999


Q ss_pred             HHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeee
Q 021504          249 MASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQ  300 (311)
Q Consensus       249 AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~e~~~~~pI~L~Yhg~gHYDSL~  300 (311)
                      |||++|+++|.|++.|...++.+....|++.  ..++|+|+|+. ||||+|+
T Consensus       185 ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~--~~p~I~LlY~p-gHYdiLy  233 (234)
T 2zfy_A          185 ALAQALSVSIQVEYMDRGEGGTTNPHIFPEG--SEPKVYLLYRP-GHYDILY  233 (234)
T ss_dssp             HHHHHHTCCEEEEECC-CCSSCCEEEEESTT--CCCSEEEEEET-TEEEEEE
T ss_pred             HHHHHhCCCEEEEEcCCCCCCcccceeCCCC--CCCeEEEEECC-CCcccCC
Confidence            9999999999999988665444555667653  45789999997 5999996

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.66  E-value=1.1e-07  Score=92.22  Aligned_cols=140  Identities=20%  Similarity=0.334  Sum_probs=89.0

Q ss_pred             cEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhh----hhhc-------c----ccCH
Q 021504          164 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREE----TEWF-------I----EGDF  228 (311)
Q Consensus       164 L~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~----fe~f-------i----e~df  228 (311)
                      |......||||||.+|++..++   |-++.+..+|+.++.-||+.....|+.+...    ++.|       .    ..+|
T Consensus       112 L~pL~t~GDGnCLLHAvSqamW---Gv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW  188 (390)
T 3dkb_A          112 LVALKTNGDGNCLMHATSQYMW---GVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEW  188 (390)
T ss_dssp             EEEBCCCCSSCHHHHHHHHHHH---SSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHH
T ss_pred             eEEEEecCCCchHHHHHhHHhc---CCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHH
Confidence            5567889999999999999999   7777888999999988887543334332211    1111       1    2356


Q ss_pred             HHHHHHhcCCCC-------c--CCHHHHHHHHHhcCCCEEEEeec--C--CCCCceEEEEcCC---------CCCCCCeE
Q 021504          229 DLYVSQIRKPHV-------W--GGEPELLMASHVLRMPITVYMHD--K--DAGGLISIAEYGQ---------EYGKEKPI  286 (311)
Q Consensus       229 deYl~~M~k~gt-------W--GG~lEL~AlA~ll~~~I~Vy~~d--~--~s~g~i~I~~yG~---------e~~~~~pI  286 (311)
                      ++-++.-+.+..       +  =-++=+.+||++++|||+||...  +  ..++.+....|+.         +.=...||
T Consensus       189 ~~Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI  268 (390)
T 3dkb_A          189 DNLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPI  268 (390)
T ss_dssp             HHHHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCE
T ss_pred             HHHHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCce
Confidence            665554433211       1  23566899999999999999522  1  1122221122221         11136799


Q ss_pred             EEEEcCCCcceeeecCCCCCC
Q 021504          287 RVLYHGFGHYDALQNLGHEGG  307 (311)
Q Consensus       287 ~L~Yhg~gHYDSL~~~~~~~p  307 (311)
                      .|+|+. |||.+|..-...+|
T Consensus       269 ~LgY~s-~HFsaLV~me~~~~  288 (390)
T 3dkb_A          269 VLGYDS-HHFVPLVTLKDSGP  288 (390)
T ss_dssp             EEEECS-SCEEEEEEBCSSSS
T ss_pred             EEEecc-CceeeeeecccCCC
Confidence            999998 59999988665554

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.25  E-value=4.3e-06  Score=82.42  Aligned_cols=137  Identities=23%  Similarity=0.344  Sum_probs=93.0

Q ss_pred             cEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhh---------hcc--c----cCH
Q 021504          164 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETE---------WFI--E----GDF  228 (311)
Q Consensus       164 L~I~~IpgDGNCLFRAVA~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~d~fe---------~fi--e----~df  228 (311)
                      |..-...||||||-+|++..++   |-++.+..||+.+++-|++.- .-|..+...+|         .|.  +    .+|
T Consensus       189 L~pL~t~GDGNCLLHAvSqamW---GV~DrdlvLRkaL~~~L~~~~-~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW  264 (454)
T 3zrh_A          189 LYALWNRTAGDCLLDSVLQATW---GIYDKDSVLRKALHDSLHDCS-HWFYTRWKDWESWYSQSFGLHFSLREEQWQEDW  264 (454)
T ss_dssp             EEEBCCCCSSCHHHHHHHHTTT---SSCCGGGHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred             eeEeeecCCCccHHHHHHHHhh---cccCCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhcCCcccccHHHHHHHH
Confidence            4556889999999999999999   878888899998999888743 33444433211         221  2    357


Q ss_pred             HHHHHHhcCCCCcCCHHHHHHHHHhcCCCEEEEeecCC--CCC-ceEEEEcCCCC---------CCCCeEEEEEcCCCcc
Q 021504          229 DLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKD--AGG-LISIAEYGQEY---------GKEKPIRVLYHGFGHY  296 (311)
Q Consensus       229 deYl~~M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~--s~g-~i~I~~yG~e~---------~~~~pI~L~Yhg~gHY  296 (311)
                      +.-+..-+.|+.==-++=+.+||++++|||+||....-  ..| .+....|+.=|         =...||.|.|+.. ||
T Consensus       265 ~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~g-HF  343 (454)
T 3zrh_A          265 AFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTRG-HF  343 (454)
T ss_dssp             HHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEETT-EE
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEeccc-ce
Confidence            77777777787666677789999999999999974210  001 11111122111         1257999999985 99


Q ss_pred             eeeecCCCC
Q 021504          297 DALQNLGHE  305 (311)
Q Consensus       297 DSL~~~~~~  305 (311)
                      .+|..-...
T Consensus       344 saLV~~~~~  352 (454)
T 3zrh_A          344 SALVAMEND  352 (454)
T ss_dssp             EEEEEBCCC
T ss_pred             eeeeecccc
Confidence            999877654

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=96.34  E-value=0.01  Score=53.89  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.4

Q ss_pred             EEEeeCCCCchHhHHHHHhhhh
Q 021504          165 SVIGIPGDGRCLFRAVAHGACL  186 (311)
Q Consensus       165 ~I~~IpgDGNCLFRAVA~QL~~  186 (311)
                      .++.|.|||||+|||++.+...
T Consensus        44 ~~R~vRgDGNCFyRaf~f~ylE   65 (234)
T 2zfy_A           44 YIRKTRPDGNCFYRAFGFSHLE   65 (234)
T ss_dssp             EEECBCCSSCHHHHHHHHHHHH
T ss_pred             ceeeccCCccHHHHHHHHHHHH
Confidence            6689999999999999988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	311
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	1e-13

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (163), Expect = 1e-13
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 7/98 (7%)

Query: 205 LRAKVADEFIKRREETEWFIEGDFDL---YVSQIRKPHVWGGEPELLMASHVLRMPITVY 261
           LR   +     R +    FI+ + D+      ++          ++   S  L + + V 
Sbjct: 129 LRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVE 188

Query: 262 MHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDAL 299
             D+       +  +         + +LY    HY+ L
Sbjct: 189 YVDEMDTA---LNHHVFPEAATPSVYLLYKT-SHYNIL 222

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	311
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.82

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.2e-20  Score=165.18  Aligned_cols=98  Identities=15%  Similarity=0.207  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhcChhhhhhcccc--CHHHHHHH-hcCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCC
Q 021504          202 ADDLRAKVADEFIKRREETEWFIEG--DFDLYVSQ-IRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQ  278 (311)
Q Consensus       202 h~eLR~~vvdy~~~n~d~fe~fie~--dfdeYl~~-M~k~gtWGG~lEL~AlA~ll~~~I~Vy~~d~~s~g~i~I~~yG~  278 (311)
                      ...+|..++.||+.|+++|++|+++  ++++||.+ |.++++|||++||+|+|++|+++|+|+..|.+.+ .+....+++
T Consensus       126 v~~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~-~~~~~~~~~  204 (228)
T d1tffa_         126 VQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDT-ALNHHVFPE  204 (228)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCCC
T ss_pred             HHHHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCC-ccccccCCC
Confidence            3468999999999999999999964  69999975 8999999999999999999999999999876532 233334433


Q ss_pred             CCCCCCeEEEEEcCCCcceeeecCC
Q 021504          279 EYGKEKPIRVLYHGFGHYDALQNLG  303 (311)
Q Consensus       279 e~~~~~pI~L~Yhg~gHYDSL~~~~  303 (311)
                        ...++|+|+|.+ ||||.|+..+
T Consensus       205 --~~~~~I~Lly~p-gHYdiLY~~~  226 (228)
T d1tffa_         205 --AATPSVYLLYKT-SHYNILYAAD  226 (228)
T ss_dssp             --CSSCSEEEEEET-TEEEEEEECC
T ss_pred             --CCCCEEEEEeCC-CCcccCccCC
Confidence              345789999987 5999998664