Citrus Sinensis ID: 021563

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
MGLMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
ccEEccccccHHHHHHHccccccEEEEEEEEEEEcccccccccccEEEEEEEEEEEEEEEcccccEEEEEEEEEEccccccccEEEEEEEccccEEEEEEEcccHHHHHHHHHHccccccccEEEEEEEccEEEEEEEEcEEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHHHHcccHHHHHccccEEEEEcccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcHHHHHHHHHcccccEEEEEccccccccccc
ccEEEcccHHHHHHHHHHHccccEEEEEEEEEEEEEccccccccEEEEEEEEEEEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEEcccEEEEEEccccHHHHHHHHHHccHcccccEEEEEEccccEEEEEEEcccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHHHcccHHHHHHcccEEEEEcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEccHHHHHHHHHcccHEEEEEEcHHEHHHHccc
mglmepvdsddlwfaynliapgdsvMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVdydkegsvlrirgknilenehvkiGAFHTLEIELHRAFVLRKDLWDSlaldtlhqaadptaSADLAVVLMQEGLAHILLVGRsmtitrsrietsiprkhgpaiaGYESALNKFFENVLQAFLKHVDFNVVRCaviaspgftkdqFHRHLLLEAERRQLRPIIENKSRIILVHTssgykhslrevldapnvmnmiKDTKAAQEVQALKDFFNMltndptracygpkhvEVAHERMAVQTLLITDDLFRLVCSKS
MGLMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQmasgsrdaervklkleikvevvdydkegsvlrirgknilenehVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRietsiprkhgpAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRqlrpiienksriilvhtssgykhslrEVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
MGLMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERvklkleikvevvDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
**********DLWFAYNLIAPGDSVMAVTVRKVLRQMA*****AERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVC***
MGLMEPVDSDDLWFAYNLIAPGDSVMAVTV******************LKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSR*********************KFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVC***
MGLMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
MGLMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
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MGLMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query311 2.2.26 [Sep-21-2011]
P48612395 Protein pelota OS=Drosoph yes no 0.964 0.759 0.52 2e-93
Q7ZWC4385 Protein pelota homolog OS yes no 0.964 0.779 0.48 4e-85
Q5U567383 Protein pelota homolog OS N/A no 0.964 0.783 0.496 8e-85
Q58DV0385 Protein pelota homolog OS yes no 0.964 0.779 0.48 3e-84
Q5RCE3385 Protein pelota homolog OS yes no 0.964 0.779 0.483 3e-84
Q9BRX2385 Protein pelota homolog OS yes no 0.964 0.779 0.483 3e-84
Q5XIP1385 Protein pelota homolog OS yes no 0.964 0.779 0.476 4e-84
Q5ZK01385 Protein pelota homolog OS yes no 0.964 0.779 0.47 1e-83
Q80X73385 Protein pelota homolog OS yes no 0.964 0.779 0.47 3e-83
P50444381 Uncharacterized protein R yes no 0.958 0.782 0.422 2e-67
>sp|P48612|PELO_DROME Protein pelota OS=Drosophila melanogaster GN=pelo PE=2 SV=2 Back     alignment and function desciption
 Score =  342 bits (878), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 156/300 (52%), Positives = 224/300 (74%)

Query: 6   PVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGS 65
           P +S+D+W AYNLIA GDSV + T+RKV  + A+GS  + RV+  L I VE +D+D +  
Sbjct: 20  PEESEDMWHAYNLIAKGDSVRSTTIRKVQNETATGSSTSSRVRTTLTIAVESIDFDTQAC 79

Query: 66  VLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAV 125
           VLR++G+NI EN++VK+GA+HTL++EL+R F LRK  WD++AL+ +  A DPT SAD+A 
Sbjct: 80  VLRLKGRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAA 139

Query: 126 VLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDF 185
           V+MQEGLAH+ L+  SMT+ RS+IE SIPRK   ++  +E  L KF+E V+Q+ L+HV+F
Sbjct: 140 VVMQEGLAHVCLITASMTLVRSKIEVSIPRKRKGSVQQHEKGLAKFYEQVMQSILRHVNF 199

Query: 186 NVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDA 245
           +VV+C +IASPGF +DQF+ ++  +A +   + +++NKS+ +LVH SSG+KHSLRE+L  
Sbjct: 200 DVVKCVLIASPGFVRDQFYDYMFQQAVKMDYKLLLDNKSKFMLVHASSGFKHSLREILQD 259

Query: 246 PNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 305
           P V+  + DTKAA EV+AL+ F+ ML  +P +A YG KHV  A E  A++TLLI+D+LFR
Sbjct: 260 PAVLAKMSDTKAAGEVKALEQFYMMLQCEPAKAFYGKKHVLQAAESQAIETLLISDNLFR 319
Required prior to the first meiotic division for spindle formation and nuclear envelope breakdown during spermatogenesis. It is also required for normal eye patterning and for mitotic divisions in the ovary. Required for ovarian germ line stem cell self-renewal. May play a role in regulating translation. May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q7ZWC4|PELO_DANRE Protein pelota homolog OS=Danio rerio GN=pelo PE=2 SV=1 Back     alignment and function description
>sp|Q5U567|PELO_XENLA Protein pelota homolog OS=Xenopus laevis GN=pelo PE=2 SV=1 Back     alignment and function description
>sp|Q58DV0|PELO_BOVIN Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2 Back     alignment and function description
>sp|Q5RCE3|PELO_PONAB Protein pelota homolog OS=Pongo abelii GN=PELO PE=2 SV=1 Back     alignment and function description
>sp|Q9BRX2|PELO_HUMAN Protein pelota homolog OS=Homo sapiens GN=PELO PE=1 SV=2 Back     alignment and function description
>sp|Q5XIP1|PELO_RAT Protein pelota homolog OS=Rattus norvegicus GN=Pelo PE=2 SV=1 Back     alignment and function description
>sp|Q5ZK01|PELO_CHICK Protein pelota homolog OS=Gallus gallus GN=PELO PE=2 SV=1 Back     alignment and function description
>sp|Q80X73|PELO_MOUSE Protein pelota homolog OS=Mus musculus GN=Pelo PE=2 SV=3 Back     alignment and function description
>sp|P50444|YNU6_CAEEL Uncharacterized protein R74.6 OS=Caenorhabditis elegans GN=R74.6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query311
225431029378 PREDICTED: protein pelota [Vitis vinifer 0.971 0.798 0.903 1e-161
255543102378 pelota, putative [Ricinus communis] gi|2 0.971 0.798 0.880 1e-159
449442249379 PREDICTED: protein pelota-like [Cucumis 0.971 0.796 0.877 1e-157
224082576377 predicted protein [Populus trichocarpa] 0.967 0.798 0.874 1e-155
363807988379 uncharacterized protein LOC100793935 [Gl 0.971 0.796 0.861 1e-154
356535240379 PREDICTED: protein pelota-like [Glycine 0.971 0.796 0.858 1e-153
297799208378 hypothetical protein ARALYDRAFT_492022 [ 0.958 0.788 0.842 1e-147
30687676378 Eukaryotic release factor 1 (eRF1) famil 0.958 0.788 0.838 1e-147
116310865378 OSIGBa0132E09-OSIGBa0108L24.21 [Oryza sa 0.964 0.793 0.78 1e-139
38345200378 OSJNBa0015K02.10 [Oryza sativa Japonica 0.964 0.793 0.78 1e-139
>gi|225431029|ref|XP_002279875.1| PREDICTED: protein pelota [Vitis vinifera] gi|297735305|emb|CBI17667.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  572 bits (1473), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 273/302 (90%), Positives = 290/302 (96%)

Query: 4   MEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKE 63
           M PVDSDDLW+AYNLIAPGD+V+AVTVRKVLR++ASG RDAERVKLKLEIKVEV DYDK 
Sbjct: 18  MVPVDSDDLWYAYNLIAPGDTVLAVTVRKVLREVASGGRDAERVKLKLEIKVEVADYDKV 77

Query: 64  GSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADL 123
           GSVLRIRGKNILENE+VKIG FHTLEIE HR FVLRK +WDSLALDTL+QA+DP ASADL
Sbjct: 78  GSVLRIRGKNILENEYVKIGQFHTLEIEQHRPFVLRKVVWDSLALDTLNQASDPAASADL 137

Query: 124 AVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHV 183
           AVVLMQEGLAH++L+GRS+TITRSRIE SIPRKHGPAIAGYE+ALNKFFENVLQAFLK+V
Sbjct: 138 AVVLMQEGLAHVILIGRSLTITRSRIEASIPRKHGPAIAGYEAALNKFFENVLQAFLKYV 197

Query: 184 DFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVL 243
           DFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLR IIENKSRIILVHTSSGYKHSL+EVL
Sbjct: 198 DFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRSIIENKSRIILVHTSSGYKHSLKEVL 257

Query: 244 DAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 303
           DAPNVMNMIKDTKAAQEVQALKDFFNML+NDP RACYGPKHVEVAHERMAVQTLLITDDL
Sbjct: 258 DAPNVMNMIKDTKAAQEVQALKDFFNMLSNDPARACYGPKHVEVAHERMAVQTLLITDDL 317

Query: 304 FR 305
           FR
Sbjct: 318 FR 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543102|ref|XP_002512614.1| pelota, putative [Ricinus communis] gi|223548575|gb|EEF50066.1| pelota, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449442249|ref|XP_004138894.1| PREDICTED: protein pelota-like [Cucumis sativus] gi|449477765|ref|XP_004155116.1| PREDICTED: protein pelota-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224082576|ref|XP_002306749.1| predicted protein [Populus trichocarpa] gi|222856198|gb|EEE93745.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363807988|ref|NP_001242204.1| uncharacterized protein LOC100793935 [Glycine max] gi|255640054|gb|ACU20318.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356535240|ref|XP_003536156.1| PREDICTED: protein pelota-like [Glycine max] Back     alignment and taxonomy information
>gi|297799208|ref|XP_002867488.1| hypothetical protein ARALYDRAFT_492022 [Arabidopsis lyrata subsp. lyrata] gi|297313324|gb|EFH43747.1| hypothetical protein ARALYDRAFT_492022 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30687676|ref|NP_194495.3| Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana] gi|3941543|gb|AAC82379.1| pelota [Arabidopsis thaliana] gi|4469016|emb|CAB38277.1| pelota (PEL1) [Arabidopsis thaliana] gi|7269619|emb|CAB81415.1| pelota (PEL1) [Arabidopsis thaliana] gi|18377690|gb|AAL66995.1| putative pelota (PEL1) protein [Arabidopsis thaliana] gi|20465995|gb|AAM20219.1| putative pelota protein (PEL1) [Arabidopsis thaliana] gi|332659974|gb|AEE85374.1| Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|116310865|emb|CAH67807.1| OSIGBa0132E09-OSIGBa0108L24.21 [Oryza sativa Indica Group] gi|125550079|gb|EAY95901.1| hypothetical protein OsI_17764 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|38345200|emb|CAE02893.2| OSJNBa0015K02.10 [Oryza sativa Japonica Group] gi|38346417|emb|CAE54582.1| OSJNBa0011F23.23 [Oryza sativa Japonica Group] gi|222629704|gb|EEE61836.1| hypothetical protein OsJ_16488 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query311
TAIR|locus:2137732378 PEL1 "AT4G27650" [Arabidopsis 0.958 0.788 0.808 3.7e-126
TAIR|locus:2085465395 AT3G58390 "AT3G58390" [Arabido 0.877 0.691 0.744 1.8e-112
FB|FBgn0011207395 pelo "pelota" [Drosophila mela 0.964 0.759 0.503 8.5e-81
ZFIN|ZDB-GENE-040426-1074385 pelo "pelota homolog (Drosophi 0.964 0.779 0.466 6.5e-74
UNIPROTKB|Q58DV0385 PELO "Protein pelota homolog" 0.964 0.779 0.466 1.4e-73
UNIPROTKB|Q9BRX2385 PELO "Protein pelota homolog" 0.964 0.779 0.47 1.4e-73
UNIPROTKB|H9L2N7361 PELO "Protein pelota homolog" 0.964 0.831 0.46 1.7e-73
UNIPROTKB|H9L2N8384 PELO "Protein pelota homolog" 0.964 0.781 0.46 1.7e-73
RGD|1359591385 Pelo "pelota homolog (Drosophi 0.964 0.779 0.463 1.7e-73
UNIPROTKB|Q5ZK01385 PELO "Protein pelota homolog" 0.964 0.779 0.46 3.6e-73
TAIR|locus:2137732 PEL1 "AT4G27650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1239 (441.2 bits), Expect = 3.7e-126, P = 3.7e-126
 Identities = 241/298 (80%), Positives = 266/298 (89%)

Query:     8 DSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERXXXXXXXXXXXXDYDKEGSVL 67
             DSDDLW+AYNLIA GDSVMAVT RKV R++  G RD+ER            DYDK+GSVL
Sbjct:    22 DSDDLWYAYNLIAVGDSVMAVTFRKVQREIPGGGRDSERVKLKLEVQVEEVDYDKDGSVL 81

Query:    68 RIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVL 127
             RIRGKNILENEHVKIGAFHTLE+EL R FVLRK++WDS+ALDTL QA+DP ASADLAVVL
Sbjct:    82 RIRGKNILENEHVKIGAFHTLELELKRPFVLRKEMWDSMALDTLKQASDPAASADLAVVL 141

Query:   128 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNV 187
             MQEGLA I LVGRS+T +R+RIETSIPRKHGPAIAGYESAL KFFENVLQAF+KHVDF+V
Sbjct:   142 MQEGLAQIFLVGRSVTSSRARIETSIPRKHGPAIAGYESALKKFFENVLQAFVKHVDFSV 201

Query:   188 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN 247
             VRCAV+ASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHT+SGY+HSL EVL APN
Sbjct:   202 VRCAVVASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTNSGYRHSLGEVLHAPN 261

Query:   248 VMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 305
             VMNMIKDTKAA+EV+AL DF NML+ +P RACYGPKHVEVA+ERMA+QTLLITD+LFR
Sbjct:   262 VMNMIKDTKAAKEVKALNDFHNMLSTEPDRACYGPKHVEVANERMAIQTLLITDELFR 319
GO:0003747 "translation release factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006415 "translational termination" evidence=ISS
GO:0007126 "meiosis" evidence=ISS
TAIR|locus:2085465 AT3G58390 "AT3G58390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0011207 pelo "pelota" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1074 pelo "pelota homolog (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DV0 PELO "Protein pelota homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BRX2 PELO "Protein pelota homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H9L2N7 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H9L2N8 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1359591 Pelo "pelota homolog (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZK01 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P48612PELO_DROME3, ., 1, ., -, ., -0.520.96460.7594yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query311
COG1537352 COG1537, PelA, Predicted RNA-binding proteins [Gen 4e-62
TIGR00111351 TIGR00111, pelota, mRNA surveillance protein pelot 7e-44
pfam03464129 pfam03464, eRF1_2, eRF1 domain 2 8e-36
pfam03463133 pfam03463, eRF1_1, eRF1 domain 1 5e-34
pfam03465100 pfam03465, eRF1_3, eRF1 domain 3 9e-14
TIGR03676357 TIGR03676, aRF1/eRF1, peptide chain release factor 3e-11
PRK04011411 PRK04011, PRK04011, peptide chain release factor 1 1e-07
COG1503411 COG1503, eRF1, Peptide chain release factor 1 (eRF 4e-04
>gnl|CDD|224454 COG1537, PelA, Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information 
 Score =  200 bits (511), Expect = 4e-62
 Identities = 94/302 (31%), Positives = 161/302 (53%), Gaps = 16/302 (5%)

Query: 4   MEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKE 63
           + P   DDLW  YN+I  GD V A T R+        S+  ER+ + L IKVE +++DK 
Sbjct: 15  LVPETLDDLWHLYNIIEKGDKVFAKTTRRDESSDVIRSKKGERIPMTLGIKVEKIEFDKF 74

Query: 64  GSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADL 123
            + LRI+G  +   E V  G++HT+ + +     + K+ W+   L+ L +A + +   ++
Sbjct: 75  ANRLRIKGPIVEGPEEVVKGSYHTINVTIGTEIEIEKEEWNKDQLERLKEAVEASKRPEV 134

Query: 124 AVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHV 183
           A+V++ EG A I +V     I   +I + IP K      G   A  KFF+ + +A  ++ 
Sbjct: 135 AIVVVDEGEAAIAIVRDYGIIILGKIRSGIPGKR----EGDIRAERKFFDEIAKALKEYA 190

Query: 184 DFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVL 243
           + +++   ++A PGF K+ F+  L      R+  P     + I++  TS+G +  + EVL
Sbjct: 191 NLDII---IVAGPGFAKEDFYDFL------RERYP---ELANIVIEDTSTGGRAGINEVL 238

Query: 244 DAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 303
               V  ++ +T+ A+E++ +++F   L  D  +  YG + VE A E  AV+TLL+TD+L
Sbjct: 239 KRGAVDKILSETRIAEEIELVEEFLERLAKDDDKVAYGLEEVEKAAEYGAVETLLVTDEL 298

Query: 304 FR 305
            R
Sbjct: 299 LR 300

Length = 352
>gnl|CDD|129217 TIGR00111, pelota, mRNA surveillance protein pelota Back     alignment and domain information
>gnl|CDD|217575 pfam03464, eRF1_2, eRF1 domain 2 Back     alignment and domain information
>gnl|CDD|217574 pfam03463, eRF1_1, eRF1 domain 1 Back     alignment and domain information
>gnl|CDD|146221 pfam03465, eRF1_3, eRF1 domain 3 Back     alignment and domain information
>gnl|CDD|234307 TIGR03676, aRF1/eRF1, peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>gnl|CDD|235198 PRK04011, PRK04011, peptide chain release factor 1; Provisional Back     alignment and domain information
>gnl|CDD|224420 COG1503, eRF1, Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 311
KOG2869379 consensus Meiotic cell division protein Pelota/DOM 100.0
TIGR00111351 pelota probable translation factor pelota. This mo 100.0
COG1537352 PelA Predicted RNA-binding proteins [General funct 100.0
TIGR00108409 eRF peptide chain release factor eRF/aRF, subunit 100.0
TIGR03676403 aRF1/eRF1 peptide chain release factor 1, archaeal 100.0
PRK04011411 peptide chain release factor 1; Provisional 100.0
PF03463132 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This do 100.0
COG1503411 eRF1 Peptide chain release factor 1 (eRF1) [Transl 100.0
PF03464133 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This do 99.96
KOG0688 431 consensus Peptide chain release factor 1 (eRF1) [T 99.96
PF03465113 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This do 99.43
PF10116138 Host_attach: Protein required for attachment to ho 95.49
>KOG2869 consensus Meiotic cell division protein Pelota/DOM34 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-89  Score=623.60  Aligned_cols=308  Identities=57%  Similarity=0.896  Sum_probs=303.4

Q ss_pred             cccccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEeecCCCCEEEEEEEEeecCccccc
Q 021563            3 LMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKI   82 (311)
Q Consensus         3 ~l~~E~~dDlw~lynli~~GD~V~~~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~e~v~~   82 (311)
                      |++||+.|||||+||+|++||.|+|.|.|||+.+.++|+++++|+.++|+|+||+++||+.++.||++|+++++|++|++
T Consensus        17 tmvpEe~eDmw~~ynli~~gD~v~a~T~rkvq~e~a~G~~~s~rv~~~L~i~VesidfD~~~~~L~~KGrti~eNe~Vk~   96 (379)
T KOG2869|consen   17 TMVPEESEDLWHLYNLIQVGDSVIASTIRKVQKEEATGKTKSSRVLLKLKIKVESIDFDTKACVLRLKGRTIEENEYVKM   96 (379)
T ss_pred             EECcCchhHHHHHHhhccCCceeEEEEEEEeeeccccCcccceEEEEEEEEEEEEeeccccccEEEEeeeeeeecccccc
Confidence            78999999999999999999999999999999998889888899999999999999999999999999999999999999


Q ss_pred             ccEEEEEEccCCceEEEEccCChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEEEEecCCCCCCCcc
Q 021563           83 GAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIA  162 (311)
Q Consensus        83 G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~a~i~ll~~~~~~~~~~i~~~ip~K~~~~~s  162 (311)
                      |+|||++|+++++|++.|.+||++.+++|++||++..++++++|++++|.|+||+++.++|..+++++.+||+||+++-|
T Consensus        97 GaYHTidlel~r~FtL~K~ewds~al~~l~~A~dp~~~ad~aaVvlqEGla~IcLvt~s~tilr~kIe~siPrKr~~~~s  176 (379)
T KOG2869|consen   97 GAYHTIDLELNRPFTLRKEEWDSMALKLLKEACDPAPSADVAAVVLQEGLAHICLVTKSSTILRAKIEVSIPRKRKGDVS  176 (379)
T ss_pred             cceeEEEeccCCceEEEhhhchHHHHHHHHHhhCcccccceeeeehhcCceeEEEechhHHHHHHhhhcccccccCcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             hhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcEEEEEcCCCccccHHHH
Q 021563          163 GYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREV  242 (311)
Q Consensus       163 ~~~~~~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~~~~~~s~~~~~gl~Ev  242 (311)
                      ++++.+++||++|.+++.++++|+.++|+|||||||+++.|++|+.+.+.+..+|.++.|++||.++|+|+|+.++|+|+
T Consensus       177 ~~e~~l~kfye~V~qA~~k~v~fd~vk~~vvASpgF~~~~~~d~~~q~A~~~~~k~il~nk~kf~~~h~ssg~~hslnev  256 (379)
T KOG2869|consen  177 QHEEGLEKFYENVVQAILKHVNFDVVKCVVVASPGFVKDQFMDYLFQQAVKLDLKLILENKSKFPLVHASSGYKHSLNEV  256 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcceEEEEEEcCCchhHHHHHHHHHHHHHHhchhhhhhcccceeEEecCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCchhHHhhhhhhHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCCcccCCCC
Q 021563          243 LDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSK  310 (311)
Q Consensus       243 l~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l~r~~d~~  310 (311)
                      |.+|.|.+.|+|+|+++|+++||+|+.+|+++|++||||++||.+|+|+|||++|||||++||+.|++
T Consensus       257 L~dp~v~~~l~dtK~~~EvkalddF~~~l~~~~drA~yG~khV~~A~e~~AI~tLLitD~lfr~~DV~  324 (379)
T KOG2869|consen  257 LKDPAVASKLQDTKAAKEVKALDDFYVMLSKDPDRACYGPKHVEKANEYGAIETLLITDELFRSQDVA  324 (379)
T ss_pred             hcChHHHHHhhchhhHHHHHHHHHHHHHhccCccccccCHHHHHHHHhhcchhheehhhhhcccccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999975

>TIGR00111 pelota probable translation factor pelota Back     alignment and domain information
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1 Back     alignment and domain information
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>PRK04011 peptide chain release factor 1; Provisional Back     alignment and domain information
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>KOG0688 consensus Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query311
3mca_B390 Structure Of The Dom34-Hbs1 Complex And Implication 7e-62
2vgm_A386 Structure Of Yeast Dom34 : A Protein Related To Tra 2e-31
2vgn_A386 Structure Of Yeast Dom34 : A Protein Related To Tra 6e-31
3j15_A357 Model Of Ribosome-Bound Archaeal Pelota And Abce1 L 3e-19
1x52_A124 Solution Structures Of The C-Terminal Domain Of The 3e-13
2qi2_A347 Crystal Structure Of The Thermoplasma Acidophilum P 2e-12
3obw_A364 Crystal Structure Of Two Archaeal Pelotas Reveal In 7e-11
3oby_A352 Crystal Structure Of Archaeoglobus Fulgidus Pelota 2e-07
3agj_B358 Crystal Structure Of Archaeal Pelota And Gtp-bound 1e-06
>pdb|3MCA|B Chain B, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 390 Back     alignment and structure 
Iteration: 1

 Score =  234 bits (596), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 185/302 (61%)
Query: 4   MEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERXXXXXXXXXXXXDYDKE 63
           M P + +D+W  YN++  GD + A TVR+V++  A+GS    R            D+D +
Sbjct: 18  MCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRILVENMDFDTK 77
Query: 64  GSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADL 123
            + L I+G+    +  VK+G++HTL++ELHR F L K+ WD+ ALD +  A +P+ +A++
Sbjct: 78  AAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEI 137
Query: 124 AVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHV 183
             V++ EGLA+I L+   MTI R RI+  IPRK     + Y+  L+KF+++V Q+     
Sbjct: 138 GAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEF 197
Query: 184 DFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVL 243
           DF+ ++  ++ASPGF     + ++   A +  L+ I+++K++ +++H+S+G+ HSL E+L
Sbjct: 198 DFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEIL 257
Query: 244 DAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 303
             P V + + DTK  QE++ L  F++++  D  +A YGP HV  A E  A+  LLI+D L
Sbjct: 258 KDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSL 317
Query: 304 FR 305
           FR
Sbjct: 318 FR 319
>pdb|2VGM|A Chain A, Structure Of Yeast Dom34 : A Protein Related To Translation Termination Factor Erf1 And Involved In No-Go Decay. Length = 386 Back     alignment and structure
>pdb|2VGN|A Chain A, Structure Of Yeast Dom34 : A Protein Related To Translation Termination Factor Erf1 And Involved In No-go Decay. Length = 386 Back     alignment and structure
>pdb|3J15|A Chain A, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 357 Back     alignment and structure
>pdb|1X52|A Chain A, Solution Structures Of The C-Terminal Domain Of The Human Pelota Homolog (Cgi-17) Length = 124 Back     alignment and structure
>pdb|2QI2|A Chain A, Crystal Structure Of The Thermoplasma Acidophilum Pelota Protein Length = 347 Back     alignment and structure
>pdb|3OBW|A Chain A, Crystal Structure Of Two Archaeal Pelotas Reveal Inter-Domain Structural Plasticity Length = 364 Back     alignment and structure
>pdb|3OBY|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Pelota Reveals Inter- Domain Structural Plasticity Length = 352 Back     alignment and structure
>pdb|3AGJ|B Chain B, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha Complex Length = 358 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query311
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 1e-96
2vgn_A386 DOM34; translation termination factor, protein bio 7e-93
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 2e-74
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 4e-74
3agj_B358 Protein pelota homolog; GTP binding, translation-h 3e-72
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 8e-71
2qi2_A347 Pelota, cell division protein pelota related prote 6e-64
3agk_A373 Peptide chain release factor subunit 1; translatio 3e-32
3e20_C 441 Eukaryotic peptide chain release factor subunit 1; 1e-24
1dt9_A 437 ERF1, protein (eukaryotic peptide chain release fa 3e-20
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 5e-17
3ir9_A166 Peptide chain release factor subunit 1; structural 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 390 Back     alignment and structure
 Score =  289 bits (741), Expect = 1e-96
 Identities = 117/302 (38%), Positives = 193/302 (63%)

Query: 4   MEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKE 63
           M P + +D+W  YN++  GD + A TVR+V++  A+GS    RV +KL I VE +D+D +
Sbjct: 18  MCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRILVENMDFDTK 77

Query: 64  GSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADL 123
            + L I+G+    +  VK+G++HTL++ELHR F L K+ WD+ ALD +  A +P+ +A++
Sbjct: 78  AAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEI 137

Query: 124 AVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHV 183
             V++ EGLA+I L+   MTI R RI+  IPRK     + Y+  L+KF+++V Q+     
Sbjct: 138 GAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEF 197

Query: 184 DFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVL 243
           DF+ ++  ++ASPGF     + ++   A +  L+ I+++K++ +++H+S+G+ HSL E+L
Sbjct: 198 DFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEIL 257

Query: 244 DAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 303
             P V + + DTK  QE++ L  F++++  D  +A YGP HV  A E  A+  LLI+D L
Sbjct: 258 KDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSL 317

Query: 304 FR 305
           FR
Sbjct: 318 FR 319
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Length = 386 Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Length = 357 Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Length = 364 Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Length = 358 Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Length = 352 Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347 Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Length = 373 Back     alignment and structure
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Length = 441 Back     alignment and structure
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Length = 437 Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Length = 124 Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Length = 166 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query311
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 100.0
2vgn_A386 DOM34; translation termination factor, protein bio 100.0
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 100.0
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 100.0
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 100.0
3agj_B358 Protein pelota homolog; GTP binding, translation-h 100.0
2qi2_A347 Pelota, cell division protein pelota related prote 100.0
3e20_C 441 Eukaryotic peptide chain release factor subunit 1; 100.0
1dt9_A 437 ERF1, protein (eukaryotic peptide chain release fa 100.0
3agk_A373 Peptide chain release factor subunit 1; translatio 100.0
3ir9_A166 Peptide chain release factor subunit 1; structural 99.77
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 99.69
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=4.3e-89  Score=658.11  Aligned_cols=307  Identities=38%  Similarity=0.684  Sum_probs=270.0

Q ss_pred             cccccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEeecCCCCEEEEEEEEeecCccccc
Q 021563            3 LMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKI   82 (311)
Q Consensus         3 ~l~~E~~dDlw~lynli~~GD~V~~~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~e~v~~   82 (311)
                      +|+||++||||||||||++||.|+|+|+|||++++++|+++++|++|+|+|+||+++|||++++|||+|+|+++|+++++
T Consensus        17 ~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~~~~~~~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~~~vk~   96 (390)
T 3mca_B           17 TMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRILVENMDFDTKAAQLHIKGRTTEYHPEVKM   96 (390)
T ss_dssp             BC---CTHHHHHHHHHCCTTCEEBCCCCCC--------------------EECCCEEECTTSSCEEEC-CBCSCCC---C
T ss_pred             EEEeCCHHHHHHHHHhcCCCCEEEEEEEEEEEccCCCCCCceEEEEEEEEEEEEEEEecCCCCEEEEEEEEecCCccccc
Confidence            68999999999999999999999999999999988889889999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEccCCceEEEEccCChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEEEEecCCCCCCCcc
Q 021563           83 GAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIA  162 (311)
Q Consensus        83 G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~a~i~ll~~~~~~~~~~i~~~ip~K~~~~~s  162 (311)
                      |+|||++|+||+||+++|++||+|++++|++|++++.++++++|+||+|+|+||+++++++.+++++++++|+||++|.+
T Consensus        97 G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~iPkK~~~gg~  176 (390)
T 3mca_B           97 GSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSS  176 (390)
T ss_dssp             CSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEEECSSCEEEEEEEECCCCCCBTTBCH
T ss_pred             cceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEEEcCCEEEEEEEEEEeCCCcCCCCch
Confidence            99999999999999999999999999999999999988899999999999999999999999999999999999988655


Q ss_pred             hhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcEEEEEcCCCccccHHHH
Q 021563          163 GYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREV  242 (311)
Q Consensus       163 ~~~~~~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~~~~~~s~~~~~gl~Ev  242 (311)
                      ++++++++||++|++++.+++++.++++||||||||+|++|++||.+++.+..++.|+.+++||+++|+|+||++|++|+
T Consensus       177 ~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~~~~~~~~k~l~~~~~k~~vv~~s~gg~~gl~Ev  256 (390)
T 3mca_B          177 AYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEI  256 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHHHHHHTTCHHHHHHGGGEEEEECSCSSGGGGGTS
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHHHHhhccchhhhhhcCeEEEEEcCCCcchhHHHH
Confidence            89999999999999999999999999999999999999999999999999888888888889999999999999999999


Q ss_pred             hcCchhHHhhhhhhHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCCcccCCC
Q 021563          243 LDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCS  309 (311)
Q Consensus       243 l~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l~r~~d~  309 (311)
                      |++|+++++|+++++++|.++|++||++|++|+++||||+++|.+|+++|||+||||+|++||++|+
T Consensus       257 l~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r~~d~  323 (390)
T 3mca_B          257 LKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLFRSSDI  323 (390)
T ss_dssp             SSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETTCCCSCH
T ss_pred             HhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEecccccCCCh
Confidence            9999999999999999999999999999999999999999999999999999999999999998874
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Back     alignment and structure
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Back     alignment and structure
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 311
d2vgna2142 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisi 1e-56
d2vgna1135 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae 2e-38
d2qi2a1126 b.38.4.1 (A:1-126) Cell division protein pelota {T 2e-36
d2qi2a2117 c.55.4.2 (A:127-243) Cell division protein pelota 4e-18
d1x52a1111 d.79.3.2 (A:8-118) Cell division protein pelota {H 1e-16
d2vgna3104 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisi 8e-14
d1dt9a2146 d.79.3.2 (A:277-422) C-terminal domain of eukaryot 4e-13
d2qi2a395 d.79.3.2 (A:244-338) Cell division protein pelota 5e-12
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 142 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  177 bits (451), Expect = 1e-56
 Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 1/139 (0%)

Query: 119 ASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPA-IAGYESALNKFFENVLQ 177
             +D A V++QEG+AH+ LV  S TI + +IE S+P+K     +  ++    KF++ +  
Sbjct: 3   YKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYS 62

Query: 178 AFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKH 237
           A  K ++F+ ++  ++ SPGF        +   AE    + I++NK    + H S+GY  
Sbjct: 63  AMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKKILDNKGMFFIAHCSTGYLQ 122

Query: 238 SLREVLDAPNVMNMIKDTK 256
            + EVL  P   + ++DTK
Sbjct: 123 GINEVLKNPLYASKLQDTK 141
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 135 Back     information, alignment and structure
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 126 Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 117 Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 104 Back     information, alignment and structure
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 95 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query311
d2qi2a1126 Cell division protein pelota {Thermoplasma acidoph 100.0
d2vgna1135 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 100.0
d2vgna2142 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 100.0
d2qi2a2117 Cell division protein pelota {Thermoplasma acidoph 99.92
d1dt9a1134 Middle domain of eukaryotic peptide chain release 99.85
d1x52a1111 Cell division protein pelota {Human (Homo sapiens) 99.68
d2vgna3104 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.56
d2qi2a395 Cell division protein pelota {Thermoplasma acidoph 99.49
d1dt9a2146 C-terminal domain of eukaryotic peptide chain rele 99.44
d1dt9a3138 N-terminal domain of eukaryotic peptide chain rele 97.71
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
class: All beta proteins
fold: Sm-like fold
superfamily: Dom34/Pelota N-terminal domain-like
family: Dom34/Pelota N-terminal domain-like
domain: Cell division protein pelota
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1.2e-40  Score=270.15  Aligned_cols=113  Identities=30%  Similarity=0.533  Sum_probs=88.9

Q ss_pred             ccccccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCC-CccceEEEEEEEEEEEEEeecCCCCEEEEEEEEeecCccc
Q 021563            2 GLMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASG-SRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHV   80 (311)
Q Consensus         2 ~~l~~E~~dDlw~lynli~~GD~V~~~T~Rkv~~~~~~g-~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~e~v   80 (311)
                      .+|.||++||||||||||++||+|+|.|+|||+++++++ +++++|++|+|+|+||+++|||++++|||+|+|+++|+++
T Consensus        13 v~L~~E~~dDLW~L~nli~~GD~V~~~T~Rkv~~~~~~~~~~~~er~~~~L~i~Ve~ief~~~~~~LRi~G~i~~~~e~~   92 (126)
T d2qi2a1          13 YRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRERERIPITIRLKVEKIEFQDFDNRLRILGTVIEGPEDT   92 (126)
T ss_dssp             EEEECCSSHHHHHHHHHCCTTCEEEEEEC-------------CCEEEEEEEEEEECCTTCSCEEEEEEECC---------
T ss_pred             EEEEECCHHHHHHHHHhCCCCCEEEEEEEEEeeccCCCCccceeEEEEEEEEEEEEEEEecCCCCEEEEeeEEeeCCccC
Confidence            368999999999999999999999999999999877766 6789999999999999999999999999999999999987


Q ss_pred             ccccEEEEEEccCCceEEEEccCChhhHHHHHHhcC
Q 021563           81 KIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAAD  116 (311)
Q Consensus        81 ~~G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~  116 (311)
                      + |+|||++|++|++|+|+| .||++++++|++|++
T Consensus        93 ~-G~~HTl~v~~~~~~~i~K-~W~~~~~~~LkeA~d  126 (126)
T d2qi2a1          93 K-GKHQSITVTVDSEISITK-EWDDQHIDLLKEATD  126 (126)
T ss_dssp             C-CSEEEEEECTTCEEEEES-CCCHHHHHHHHHHTC
T ss_pred             C-cCcEEEEEcCCCeEEEEe-cCCHHHHHHHHHhhC
Confidence            5 999999999999999999 599999999999985
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure