Citrus Sinensis ID: 021593

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MGDEIDGFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL
Secondary Structure (PSIPRED)
cccccccccEEcccccccEEEEEEccccccccccccEEEcccEEEcccEEEEEEEccccccccccccEEEEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEcccccEEEEcccccccccccEEEcccccccccccccccEEEEEEEEEEEcccccccccccccccccccccEEEEEcccccccccccccccEEEcccEEEEEEEccccccccccEEEEEEEEccccccccccEEEEEEEEEEEccccccEEEEEEEEEEccccccccccccccccccccccccEEEccEEEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccEccccccccccEEEEEccHHHHHHHccccEcccEEEEcccEEEEEEEEccccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEEccccEEEEcccccccccHHcccHHHcccccccEEEccEEEEEEEEEEEEcccccccccEEEcccccccEEEEEEEcccHcccccccccEEEEcccEEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEccEEcccccccccccHcEEHHHHccccccEEEccEEEEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
mgdeidgftrsvseappthytVKIQSFSLLLKNSVEkyesgdfeaggykWKLVLypagnksknVKEHISVYLAMEntsslqhgwEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRlkrewgfdefipikafndasngflledtCVFGAEVFVskerstgkgeclsmikdapsikhvWRIENFSKLrseccdsqvfssgdqkwqiqlypkgrrhgtgTHLAVYLALadsttltpgskiyAEFTLRLLDQAQARHIAGkadfwfsasnpesgwaRYVSFTyfnkpgngclvkdVCLVEAEVTVHGISNAL
Flexible Loop (DISEMBL)
mgdeidgftrsvseappthyTVKIQSFSLLLKNSVEKYEsgdfeaggyKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVskerstgkgeclsmikdapsikhVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL
Low Complexity Region (SEG)
MGDEIDGFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL
Disordered region (IsUnstruct)
******************HYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI****
Disordered Region (DISOPRED)
******************HYTVKIQSFSLLLKN*V*KYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL
Disordered Region (DISEMBL)
MGDEIDGFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL
Disordered Region (DISPRO)
*********RSV**APPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDEIDGFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
Q9FPT1	1116	Ubiquitin carboxyl-termin	no	no	0.432	0.120	0.351	1e-17
Q84WU2	1115	Ubiquitin carboxyl-termin	no	no	0.432	0.120	0.333	1e-15
Q8RY18	1055	MATH domain-containing pr	no	no	0.425	0.125	0.290	5e-07
Q1EBV6	410	BTB/POZ and MATH domain-c	no	no	0.274	0.207	0.307	2e-05
A1L4W5	415	BTB/POZ and MATH domain-c	no	no	0.293	0.219	0.313	5e-05
O22286	408	BTB/POZ and MATH domain-c	no	no	0.480	0.365	0.265	5e-05
Q9SRV1	465	BTB/POZ and MATH domain-c	no	no	0.267	0.178	0.303	0.0001
Q9M8J9	406	BTB/POZ and MATH domain-c	no	no	0.235	0.179	0.337	0.0002
Q8L765	407	BTB/POZ and MATH domain-c	no	no	0.235	0.179	0.35	0.0005
Q8T126	1304	Probable inactive serine/	no	no	0.835	0.198	0.198	0.0005

>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 86/145 (59%), Gaps = 11/145 (7%)

Query: 13  SEAPPT-HYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVY 71
           +E PPT  +T  I +FS   + +  K+ S  F  GGYKW+++++P GN   NV +H+S+Y
Sbjct: 49  AEDPPTLKFTWTIPNFS---RQNTRKHYSDVFVVGGYKWRILIFPKGN---NV-DHLSMY 101

Query: 72  LAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIK 131
           L + + +SL +GW  YA F L +++Q    + + ++    + +F+  + +WGF  F+P+ 
Sbjct: 102 LDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKET---QHQFNARESDWGFTSFMPLS 158

Query: 132 AFNDASNGFLLEDTCVFGAEVFVSK 156
              D S G+L+ DT +  AEV V K
Sbjct: 159 ELYDPSRGYLVNDTVLVEAEVAVRK 183

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 4/138 (2%)

Query: 170 KDAPSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALAD 229
           +D PS+K  W I  F++L +    S VF  G  KW+I ++PKG       HL++YL +AD
Sbjct: 49  EDPPSLKFTWTIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKG---NNVDHLSMYLDVAD 105

Query: 230 STTLTPGSKIYAEFTLRLLDQAQARH-IAGKADFWFSASNPESGWARYVSFTYFNKPGNG 288
           +  L  G   Y++F+L +++Q   R+ I  +    F+A   + G+  ++  +   +P  G
Sbjct: 106 AANLPYGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRG 165

Query: 289 CLVKDVCLVEAEVTVHGI 306
            LV D  L+EAEV V  +
Sbjct: 166 YLVNDTVLIEAEVAVRKV 183

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 16/148 (10%)

Query: 21  TVKIQSFSLLLKNSVEKYESGD-FEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS 79
           T  I+ FS + K  +     GD FE GGYKW +++YP G    +V  H+S++L + +   
Sbjct: 72  TWTIEKFSDINKRELR----GDVFEVGGYKWYILIYPQGC---DVCNHLSLFLCVAHHEK 124

Query: 80  LQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNG 139
           L  GW  +A F + + +++        D +    RF + + +WG+ +FI +    +   G
Sbjct: 125 LLPGWSHFAQFTIAVSNKDPKKSK-HSDTL---HRFWKKEHDWGWKKFIELPKLKE---G 177

Query: 140 FLLEDTCV-FGAEVFVSKERSTGKGECL 166
           F+ +  C+   A+V V +ER      CL
Sbjct: 178 FIDDSGCLTIKAQVQVIRERVDRPFRCL 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q1EBV6|BPM5_ARATH BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis thaliana GN=BPM5 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 9   TRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGD-FEAGGYKWKLVLYPAGNKSKNVKEH 67
           ++SV++     +   IQ +SL     + K+ + D F  GGY+W +  YP G   ++   +
Sbjct: 20  SKSVTQTVNGSHQFVIQGYSLAKGMGIGKHIASDNFSVGGYQWGIFFYPDGKNPEDNSSY 79

Query: 68  ISVYLAMENTSSLQHGWEVYAVFRLFLLDQN 98
           +SV++A+ +      G EV A+F L L+DQ+
Sbjct: 80  VSVFIALAS-----EGTEVRALFELALVDQS 105

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|A1L4W5|BPM6_ARATH BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis thaliana GN=BPM6 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 8/99 (8%)

Query: 3   DEIDGFT--RSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGD-FEAGGYKWKLVLYPAGN 59
           D+I+  T  RSV++     +   IQ +SL     V K+ + D F  GGY+W + +YP G 
Sbjct: 19  DQIESPTSSRSVTQTTNGSHQFVIQGYSLAKGIGVGKHIASDNFSVGGYQWTIFVYPDGK 78

Query: 60  KSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQN 98
             ++   ++SV++ + +  +     EV A+F L L+DQ+
Sbjct: 79  NPEDNSSYVSVFIVLASECT-----EVRALFELSLVDQS 112

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 13/162 (8%)

Query: 6   DGFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGD-FEAGGYKWKLVLYPAGNKSKNV 64
           D  + S  E     +   IQ +SL    S  K+   D F  GGY W +  YP G   ++ 
Sbjct: 13  DSVSTSFIETVNGSHQFTIQGYSLAKGMSPGKFIQSDIFSVGGYDWAIYFYPDGKNPEDQ 72

Query: 65  KEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQN-KGNFLI---LQDAM-GAERRFHRLK 119
             +IS+++A+ + S+     ++ A+F L L+DQ+ KG   +      A+ G         
Sbjct: 73  SSYISLFIALASDSN-----DIRALFELTLMDQSGKGKHKVHSHFDRALEGGPYTLKYKG 127

Query: 120 REWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTG 161
             WG+  F    A    ++ +L +D  V    V V + R  G
Sbjct: 128 SMWGYKRFFKRSALE--TSDYLKDDCLVINCTVGVVRARLEG 167

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRV1|BPM4_ARATH BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana GN=BPM4 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 11  SVSEAPPTHYTVKIQSFSLLLKNSVEKYESGD-FEAGGYKWKLVLYPAGNKSKNVKEHIS 69
           SV++     ++  I+ +SL     + K+ + D F  GGY+W +  YP G   ++   ++S
Sbjct: 40  SVTQTINGSHSFTIKGYSLAKGIGIGKHIASDTFTVGGYQWAIYFYPDGKNPEDNSAYVS 99

Query: 70  VYLAMENTSSLQHGWEVYAVFRLFLLDQN 98
           V++A+ +      G +V A+F L LLDQ+
Sbjct: 100 VFIALAS-----DGTDVRALFELSLLDQS 123

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M8J9|BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 7/80 (8%)

Query: 23  KIQSFSLLLKNSVEKYESGD-FEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQ 81
           KI  +SL+    + KY + D F  GGY W +  YP G   ++   ++S+++A+ +     
Sbjct: 38  KISGYSLVKGMGIGKYVASDTFMVGGYSWAIYFYPDGKSPEDNSVYVSLFIALAS----- 92

Query: 82  HGWEVYAVFRLFLLDQNKGN 101
            G +V A+F L L+DQ+ GN
Sbjct: 93  EGADVRALFELTLVDQS-GN 111

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L765|BPM1_ARATH BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana GN=BPM1 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (8%)

Query: 23  KIQSFSLLLKNSVEKYESGD-FEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQ 81
           KI  +SL     V KY + D F  GGY W +  YP G   ++   ++S+++A+ +     
Sbjct: 39  KICGYSLAKGVGVGKYVASDTFMVGGYSWAIYFYPDGKSPEDNSSYVSLFIALAS----- 93

Query: 82  HGWEVYAVFRLFLLDQNKGN 101
            G +V A+F L L+DQ+ GN
Sbjct: 94  EGADVRALFELTLVDQS-GN 112

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8T126|FNKC_DICDI Probable inactive serine/threonine-protein kinase fnkC OS=Dictyostelium discoideum GN=fnkC PE=3 SV=1

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 121/287 (42%), Gaps = 28/287 (9%)

Query: 20   YTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS 79
            + + I +FS    N  +++ S  F   G  W+   Y  G K  +    +S++++  N   
Sbjct: 1028 WIISINNFS----NRKDQFYSPIFSLIGSNWRCKFYSNG-KDASTSGKLSIFIS--NCDL 1080

Query: 80   LQHGWEVY----AVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFND 135
            L + + ++      ++L L++Q   N  I + +      F   +   G+  FI + +  +
Sbjct: 1081 LNNPFTIFLEKSISYKLTLINQKNPNESIQKSS---SHTFSIKEFNHGYGSFIGLFSLLN 1137

Query: 136  ASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQ 195
             +NGFL+ +T     +V +    ++             +    + +   SK +SE   S 
Sbjct: 1138 PNNGFLVNNTI----KVRIDAAPTSPLVNTYDKYNIGLNQAFSYSVPMMSK-KSEPFISP 1192

Query: 196  VFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARH 255
            +F S  +KW I++YP G+   +  +++V+L   D        +    F+L L+ Q     
Sbjct: 1193 IFMSCGRKWIIKIYPMGQP--SSNYMSVFLEYRDE------GEENVHFSLELISQLYPEQ 1244

Query: 256  -IAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEV 301
             I     + F++ +   G+ +++  +    P  G LV D  ++   +
Sbjct: 1245 SIKYWVQYRFNSKSNSFGYPKFIGVSTLMDPDMGFLVNDTIILNVSI 1291

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
21537273	309	unknown [Arabidopsis thaliana]	0.980	0.983	0.648	1e-120
297830352	309	hypothetical protein ARALYDRAFT_479214 [	0.974	0.977	0.652	1e-120
18401489	309	TRAF-like family protein [Arabidopsis th	0.980	0.983	0.648	1e-117
11994555	304	unnamed protein product [Arabidopsis tha	0.961	0.980	0.657	1e-116
357479139	311	Ubiquitin carboxyl-terminal hydrolase [M	1.0	0.996	0.596	1e-107
356519881	310	PREDICTED: uncharacterized protein LOC10	0.996	0.996	0.590	1e-106
255556544	455	nucleic acid binding protein, putative [	0.948	0.646	0.62	1e-106
449441502	316	PREDICTED: BTB/POZ and MATH domain-conta	1.0	0.981	0.575	1e-104
449522688	316	PREDICTED: BTB/POZ and MATH domain-conta	1.0	0.981	0.578	1e-104
255636923	276	unknown [Glycine max]	0.890	1.0	0.610	3e-98

>gi|21537273|gb|AAM61614.1| unknown [Arabidopsis thaliana]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 199/307 (64%), Positives = 249/307 (81%), Gaps = 3/307 (0%)

Query: 4   EIDGFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKN 63
           + D   +S+S+APPTHY VKI+SFSLL K+++E+YE+  FEAGGYKWKLVLYP GNKSKN
Sbjct: 6   DYDEIIKSISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPNGNKSKN 65

Query: 64  VKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWG 123
            K+H+SVYLA+ ++SSL  GWEVYAVFRL+LLDQNK N+LILQ   G ERRFH +KREWG
Sbjct: 66  TKDHVSVYLALADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWG 122

Query: 124 FDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIEN 183
           FD+FIP   F+D+SNG+L+EDTC+FGA+VFVSKER +G+GECLSMIKDA S KHVW+IEN
Sbjct: 123 FDKFIPTGTFSDSSNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIEN 182

Query: 184 FSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEF 243
           FSKL  E  DS  F +GD+KW+I+ YP G + GTGTHL++YL L D  T++ G+KI+ EF
Sbjct: 183 FSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEF 242

Query: 244 TLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTV 303
           T+R+ DQ Q RHIAGK   WFS S+ E GW +YVS  YF +P +G L+KDVCLVEA+V V
Sbjct: 243 TIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADVCV 302

Query: 304 HGISNAL 310
           HGI++A+
Sbjct: 303 HGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830352|ref|XP_002883058.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata] gi|297328898|gb|EFH59317.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 199/305 (65%), Positives = 248/305 (81%), Gaps = 3/305 (0%)

Query: 6   DGFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVK 65
           D   +S+S+APPTHY VKI+SFSLL K+++E+YE+  FEAGGYKWKLVLYP GNKSKN K
Sbjct: 8   DEIIKSISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPNGNKSKNTK 67

Query: 66  EHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFD 125
           +H+SVYLA+ ++SSL  GWEVYAVFRL+LLDQNK N+LILQ   G ERRFH +KREWGFD
Sbjct: 68  DHVSVYLALADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHAVKREWGFD 124

Query: 126 EFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFS 185
           +FIP   F+DASNG+L+EDTC+FGA+VFVSKER +G+GECLSMIKDA S KHVW+IENFS
Sbjct: 125 KFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFS 184

Query: 186 KLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTL 245
           KL  E  DS  F +GD+KW+++ YP G + GTGTHL++YL L D  T++ G+KI+ EFT+
Sbjct: 185 KLDKESYDSNAFFAGDRKWKVRFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTI 244

Query: 246 RLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG 305
           R+ DQ Q RHIAGK   WFS S+ E GW +YVS  YF +P +G L+KDVCLVEA+V VHG
Sbjct: 245 RIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADVCVHG 304

Query: 306 ISNAL 310
           I++A+
Sbjct: 305 ITSAI 309

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401489|ref|NP_566576.1| TRAF-like family protein [Arabidopsis thaliana] gi|332642426|gb|AEE75947.1| TRAF-like family protein [Arabidopsis thaliana]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/307 (64%), Positives = 249/307 (81%), Gaps = 3/307 (0%)

Query: 4   EIDGFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKN 63
           + D   +S+S+APPTHY VKI+SFSLL K+++E+YE+  FEAGGYKWKLVLYP GNKSKN
Sbjct: 6   DYDEIIKSISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPNGNKSKN 65

Query: 64  VKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWG 123
            K+H+SVYL++ ++SSL  GWEVYAVFRL+LLDQNK N+LILQ   G ERRFH +KREWG
Sbjct: 66  TKDHVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWG 122

Query: 124 FDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIEN 183
           FD+FIP   F+DASNG+L+EDTC+FGA+VFVSKER +G+GECLSMIKDA S KHVW+IEN
Sbjct: 123 FDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIEN 182

Query: 184 FSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEF 243
           FSKL  E  DS  F +GD+KW+I+ YP G + GTGTHL++YL L D  T++ G+KI+ EF
Sbjct: 183 FSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEF 242

Query: 244 TLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTV 303
           T+R+ DQ Q RHIAGK   WFS S+ E GW +YVS  YF +P +G L+KDVCLVEA+V V
Sbjct: 243 TIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADVCV 302

Query: 304 HGISNAL 310
           HGI++A+
Sbjct: 303 HGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994555|dbj|BAB02742.1| unnamed protein product [Arabidopsis thaliana]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/301 (65%), Positives = 247/301 (82%), Gaps = 3/301 (0%)

Query: 10  RSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHIS 69
           +S+S+APPTHY VKI+SFSLL K+++E+YE+  FEAGGYKWKLVLYP GNKSKN K+H+S
Sbjct: 7   KSISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPNGNKSKNTKDHVS 66

Query: 70  VYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIP 129
           VYL++ ++SSL  GWEVYAVFRL+LLDQNK N+LILQ   G ERRFH +KREWGFD+FIP
Sbjct: 67  VYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWGFDKFIP 123

Query: 130 IKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRS 189
              F+DASNG+L+EDTC+FGA+VFVSKER +G+GECLSMIKDA S KHVW+IENFSKL  
Sbjct: 124 TGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFSKLDK 183

Query: 190 ECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLD 249
           E  DS  F +GD+KW+I+ YP G + GTGTHL++YL L D  T++ G+KI+ EFT+R+ D
Sbjct: 184 ESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIRIFD 243

Query: 250 QAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNA 309
           Q Q RHIAGK   WFS S+ E GW +YVS  YF +P +G L+KDVCLVEA+V VHGI++A
Sbjct: 244 QLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADVCVHGITSA 303

Query: 310 L 310
           +
Sbjct: 304 I 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479139|ref|XP_003609855.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355510910|gb|AES92052.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/310 (59%), Positives = 238/310 (76%)

Query: 1   MGDEIDGFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNK 60
           M  + +G +RS+ EA P HY +KIQSFSLL  NS+E+YESG FEAGG+KWKLVLYP+GNK
Sbjct: 1   MDTKDEGISRSIVEASPVHYIMKIQSFSLLTTNSIERYESGRFEAGGHKWKLVLYPSGNK 60

Query: 61  SKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKR 120
           SKNVK+HIS+YLA+E +SSL  GWE+Y  F+LF+ DQN  N+L+LQD +  E+RFHR+K 
Sbjct: 61  SKNVKDHISLYLALEESSSLHPGWEIYVNFKLFVYDQNNDNYLVLQDDVKKEKRFHRMKV 120

Query: 121 EWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWR 180
           EWGFD+FIP+K FN  S G+LL+D C FGAEVFV +E  TGKGE L M+KDA   KHVW 
Sbjct: 121 EWGFDQFIPLKDFNIGSKGYLLDDICAFGAEVFVCRENYTGKGESLIMMKDALPYKHVWE 180

Query: 181 IENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIY 240
           I++FSKL SECCDS+ F+ G+ KWQI+LYPKG+    G +LA+YL LA+ TT+ PGSKIY
Sbjct: 181 IKDFSKLDSECCDSKPFNVGNYKWQIKLYPKGKATDLGRYLALYLTLANPTTIPPGSKIY 240

Query: 241 AEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAE 300
           A+  LR+LDQ Q++H   KA++WFSAS+ E G +R++  + F     G LVKD+C V+ E
Sbjct: 241 AQTILRILDQKQSKHQFWKANYWFSASSHEHGTSRFILCSNFTSQYLGYLVKDICFVDVE 300

Query: 301 VTVHGISNAL 310
           VTV G+ +AL
Sbjct: 301 VTVLGVVDAL 310

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519881|ref|XP_003528597.1| PREDICTED: uncharacterized protein LOC100779090 [Glycine max]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/310 (59%), Positives = 237/310 (76%), Gaps = 1/310 (0%)

Query: 1   MGDEIDGFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNK 60
           MG + D   RS  +APP HY +KIQSFSLL KNS+E+YESG FEAGGYKWKLVLYP+GNK
Sbjct: 1   MGSQ-DAIPRSTVDAPPAHYVMKIQSFSLLAKNSIERYESGKFEAGGYKWKLVLYPSGNK 59

Query: 61  SKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKR 120
           SKN++EHIS+YLA+++TSSL HGWE+Y  FR FL DQ   N+L+  D +  ERRFH++K 
Sbjct: 60  SKNIREHISLYLALDDTSSLHHGWEIYVNFRFFLHDQTNDNYLVGPDTVRNERRFHKMKA 119

Query: 121 EWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWR 180
           EWG D+FIP++ FN AS G+L++DTC FGAEVFV KERSTGKGECL M+K+A   KH++ 
Sbjct: 120 EWGIDQFIPLRDFNLASKGYLVDDTCAFGAEVFVCKERSTGKGECLVMMKEAILYKHLYE 179

Query: 181 IENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIY 240
            +N SKL  EC DS+ F++G+ KW+I+LYPKG+    G +L++YLALAD + L+P SKIY
Sbjct: 180 FDNLSKLDLECYDSKPFNAGNFKWKIKLYPKGKGAELGNYLSLYLALADPSALSPCSKIY 239

Query: 241 AEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAE 300
           A+ TLR+LDQ QA+H  GKA++WFSAS+ E+G A ++    F     G +VKD C VEAE
Sbjct: 240 AQITLRILDQKQAKHHFGKANYWFSASSHENGAAIFMPINNFTNQNFGYVVKDSCFVEAE 299

Query: 301 VTVHGISNAL 310
           V + G+ +AL
Sbjct: 300 VIILGVVDAL 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556544|ref|XP_002519306.1| nucleic acid binding protein, putative [Ricinus communis] gi|223541621|gb|EEF43170.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/300 (62%), Positives = 231/300 (77%), Gaps = 6/300 (2%)

Query: 11  SVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISV 70
           ++S+A PTHYTVKIQ FSLL   +VEKYESG FEAGGYKWKLVLYP GNKSKNV EH+S+
Sbjct: 162 TMSDASPTHYTVKIQLFSLL---AVEKYESGSFEAGGYKWKLVLYPKGNKSKNVMEHLSL 218

Query: 71  YLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPI 130
           Y+AM ++S+LQ GWEV+ VFRLFLLDQ + N+LIL    G E RFH  + EWGFD+ IP+
Sbjct: 219 YIAMADSSNLQLGWEVHVVFRLFLLDQIRDNYLILP---GKECRFHGFRLEWGFDQLIPL 275

Query: 131 KAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSE 190
               D  NG+L+EDTCVFGAEVFV KE  TGKGECLSMIK + + K++WR ENFSKL +E
Sbjct: 276 ATLKDTKNGYLVEDTCVFGAEVFVRKESCTGKGECLSMIKSSSTSKNLWRFENFSKLDAE 335

Query: 191 CCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQ 250
           C DS+ F +GDQ+W+IQLYPKG+  G+GTHL+++LALAD T +TPG KI A+FTLR+LDQ
Sbjct: 336 CNDSKTFVAGDQRWKIQLYPKGKGLGSGTHLSLFLALADLTAITPGFKILADFTLRILDQ 395

Query: 251 AQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL 310
           ++  H+ GKA+FWFSAS+   GW+R+          N  L KD CL EAE+TV GI++ L
Sbjct: 396 SRGSHLFGKANFWFSASSSVCGWSRFYPLDQLYASSNAYLFKDTCLGEAEITVLGITDEL 455

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441502|ref|XP_004138521.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/311 (57%), Positives = 237/311 (76%), Gaps = 1/311 (0%)

Query: 1   MGDEIDGFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNK 60
           +GD+ID  +R VS+ PP HYTVKI+SFSLL KNSV+++ESG+FEAGGYKWKLVL+P G+K
Sbjct: 5   IGDDIDEISRYVSDVPPAHYTVKIESFSLLTKNSVDQFESGEFEAGGYKWKLVLHPHGDK 64

Query: 61  SKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKR 120
           SKN  +HIS+YL +  T SLQ  WEV+ V+RLFLLDQNK N+L ++D     RRF  +K+
Sbjct: 65  SKNGNDHISLYLEIAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKK 124

Query: 121 EWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKER-STGKGECLSMIKDAPSIKHVW 179
           +WGFD++I +K F ++SNG+L++D CVFGAEVFV KE    GKGECLSMIK   + KHVW
Sbjct: 125 QWGFDKYISLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMIKSPVTYKHVW 184

Query: 180 RIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKI 239
           +I+NFSKL +E  +S++F++GD+KW+I++YPKG   G G+HL+ YL LAD   L P +KI
Sbjct: 185 KIDNFSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELADPAALHPATKI 244

Query: 240 YAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEA 299
           YAE TLRL DQ  ++H +GK  +WFSASNPE G  R++    F +P  G LVKD  +VEA
Sbjct: 245 YAEVTLRLQDQIYSKHHSGKVSYWFSASNPEVGGPRFILLDNFKQPNIGFLVKDAFIVEA 304

Query: 300 EVTVHGISNAL 310
           EV++ G++NA 
Sbjct: 305 EVSIIGVANAF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522688|ref|XP_004168358.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/311 (57%), Positives = 236/311 (75%), Gaps = 1/311 (0%)

Query: 1   MGDEIDGFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNK 60
           +GD+ID  +R VS+ PP HYTVKI+SFSLL KNSV+++ESG+FEAGGYKWKLVL+P G+K
Sbjct: 5   IGDDIDEISRYVSDVPPAHYTVKIESFSLLTKNSVDQFESGEFEAGGYKWKLVLHPHGDK 64

Query: 61  SKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKR 120
           SKN  +HIS+YL +  T SLQ  WEV+ V+RLFLLDQNK N+L ++D     RRF  +K+
Sbjct: 65  SKNGNDHISLYLEIAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKK 124

Query: 121 EWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKER-STGKGECLSMIKDAPSIKHVW 179
           +WGFD++I +K F ++SNG+L++D CVFGAEVFV KE    GKGECLSMIK   + KHVW
Sbjct: 125 QWGFDKYISLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMIKSPVTYKHVW 184

Query: 180 RIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKI 239
           +I+NFSKL +E  +S++F++GD+KW+I++YPKG   G G+HL+ YL LAD   L P +KI
Sbjct: 185 KIDNFSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELADPAALHPATKI 244

Query: 240 YAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEA 299
           YAE TLRL DQ  ++H +GK  +WFSASNPE G  R++    F +P  G LVKD  +VEA
Sbjct: 245 YAEVTLRLQDQIYSKHHSGKVSYWFSASNPEVGGPRFILLDNFKQPNIGFLVKDAFIVEA 304

Query: 300 EVTVHGISNAL 310
           EV V G++NA 
Sbjct: 305 EVNVIGVANAF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636923|gb|ACU18794.1| unknown [Glycine max]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 169/277 (61%), Positives = 219/277 (79%), Gaps = 1/277 (0%)

Query: 1   MGDEIDGFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNK 60
           MG + D   RS  +APP HY +KIQSFSLL KNS+E+YESG FEAGGYKWKLVLYP+GNK
Sbjct: 1   MGSQ-DAIPRSTVDAPPAHYVMKIQSFSLLAKNSIERYESGKFEAGGYKWKLVLYPSGNK 59

Query: 61  SKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKR 120
           SKN++EHIS+YLA+++TSSL HGWE+Y  FR FL DQ   N+L+  D +  ERRFH++K 
Sbjct: 60  SKNIREHISLYLALDDTSSLHHGWEIYVNFRFFLHDQTNDNYLVGPDTVRNERRFHKMKA 119

Query: 121 EWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWR 180
           EWG D+FIP++ FN AS G+L++DTC FGAEVFV KERSTGKGECL M+K+A   KH++ 
Sbjct: 120 EWGIDQFIPLRDFNLASKGYLVDDTCAFGAEVFVCKERSTGKGECLVMMKEAILYKHLYE 179

Query: 181 IENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIY 240
            +N SKL  EC DS+ F++G+ KW+I+LYPKG+    G +L++YLALAD + L+P SKIY
Sbjct: 180 FDNLSKLDLECYDSKPFNAGNFKWKIKLYPKGKGAELGNYLSLYLALADPSALSPCSKIY 239

Query: 241 AEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYV 277
           A+ TLR+LDQ QA+H  GKA++WFSAS+ E+G A ++
Sbjct: 240 AQITLRILDQKQAKHHFGKANYWFSASSHENGAAIFM 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:2089045	309	AT3G17380 "AT3G17380" [Arabido	0.983	0.987	0.650	1.1e-112
TAIR|locus:2092344	379	AT3G20370 "AT3G20370" [Arabido	0.922	0.754	0.323	4.6e-41
TAIR|locus:2179699	350	AT5G26280 "AT5G26280" [Arabido	0.958	0.848	0.336	1.3e-38
TAIR|locus:2092329	363	AT3G20360 "AT3G20360" [Arabido	0.941	0.804	0.310	2.6e-38
TAIR|locus:2179744	351	AT5G26260 "AT5G26260" [Arabido	0.951	0.840	0.318	3.4e-38
TAIR|locus:2055998	420	AT2G04170 "AT2G04170" [Arabido	0.925	0.683	0.320	4.3e-38
TAIR|locus:2118465	297	AT4G09770 "AT4G09770" [Arabido	0.896	0.936	0.310	6.3e-37
TAIR|locus:2098318	370	AT3G28220 "AT3G28220" [Arabido	0.893	0.748	0.309	8e-37
TAIR|locus:2053674	365	AT2G15710 "AT2G15710" [Arabido	0.822	0.698	0.340	2.7e-36
TAIR|locus:2016590	396	ZW9 "AT1G58270" [Arabidopsis t	0.909	0.712	0.307	2.8e-34

TAIR|locus:2089045 AT3G17380 "AT3G17380" [Arabidopsis thaliana (taxid:3702)]

 Score = 1112 (396.5 bits), Expect = 1.1e-112, P = 1.1e-112
 Identities = 201/309 (65%), Positives = 250/309 (80%)

Query:     2 GDEIDGFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKS 61
             GD  D   +S+S+APPTHY VKI+SFSLL K+++E+YE+  FEAGGYKWKLVLYP GNKS
Sbjct:     5 GD-YDEIIKSISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPNGNKS 63

Query:    62 KNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKRE 121
             KN K+H+SVYL++ ++SSL  GWEVYAVFRL+LLDQNK N+LILQ   G ERRFH +KRE
Sbjct:    64 KNTKDHVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKRE 120

Query:   122 WGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRI 181
             WGFD+FIP   F+DASNG+L+EDTC+FGA+VFVSKER +G+GECLSMIKDA S KHVW+I
Sbjct:   121 WGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKI 180

Query:   182 ENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYA 241
             ENFSKL  E  DS  F +GD+KW+I+ YP G + GTGTHL++YL L D  T++ G+KI+ 
Sbjct:   181 ENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFV 240

Query:   242 EFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEV 301
             EFT+R+ DQ Q RHIAGK   WFS S+ E GW +YVS  YF +P +G L+KDVCLVEA+V
Sbjct:   241 EFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADV 300

Query:   302 TVHGISNAL 310
              VHGI++A+
Sbjct:   301 CVHGITSAI 309

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092344 AT3G20370 "AT3G20370" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 96/297 (32%), Positives = 156/297 (52%)

Query:    10 RSVSEAPPTHYTVKIQSFSLLLKNS-VEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHI 68
             + + + PP+ Y++K++SF+ LLK++  EKY S  F  GGY W LV++P GNK  +   ++
Sbjct:    78 KGLRDRPPSSYSLKMESFNTLLKSTYTEKYVSRPFSVGGYNWTLVVFPNGNKKDSGSGYL 137

Query:    69 SVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFI 128
             S+Y+A++N++  Q   E+YA  R ++ ++N+  +  +QD      +F   K  WGF + +
Sbjct:   138 SLYVAIDNSTLGQQ--EIYADLRFYIFNKNERKYFTIQDT--DVWKFSVFKTMWGFSQVL 193

Query:   129 PIKAFNDASNGFLLE-DTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKL 187
             PI  F D + G+L + D C FG +V +       K E  S+ ++  + +  W I  FS L
Sbjct:   194 PIDTFKDPTKGYLYDGDHCEFGVDVTMPSLYE--KSELFSVTENFLNPRFTWTIRGFSTL 251

Query:   188 RSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRL 247
                   S+VFS G + W IQ+ P G   G G  L++YL L  +    P  KIY    LR 
Sbjct:   252 LKNSYLSEVFSIGGRSWNIQINPSGLGTGEGKALSMYLGLNVNEIFRPYEKIYVRAKLRA 311

Query:   248 LDQAQARHIAGKADFWFSASN-PESGWA--RYVSFTYFNKPGNGCLVKDVCLVEAEV 301
             L+Q    +I  + D W++     E  W    ++ F Y      G +  DV +V+ E+
Sbjct:   312 LNQLNLSNIERELDIWYNGPGYGEYSWGFPEFIYFPYLTDSSKGFVKNDVLMVQVEM 368

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2179699 AT5G26280 "AT5G26280" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 102/303 (33%), Positives = 149/303 (49%)

Query:     7 GFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKE 66
             G TR + E  P+   V I SFS++ K   E YES  FEA GYKW+LVLY  GNK+    +
Sbjct:    49 GVTRELREERPSSKIVTITSFSVI-KGRGEPYESSVFEAAGYKWRLVLYVNGNKNDGGND 107

Query:    67 HISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDE 126
             HIS+Y  +E T+SL  GWEV    +LF+ +     +L + D  G  +R++  K+EWGF +
Sbjct:   108 HISLYARIEETNSLPLGWEVNVDLKLFVHNGKLHKYLTVTD--GLVKRYNNAKKEWGFGQ 165

Query:   127 FIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSK 186
              IP   F +A+ G+L +DT  FGAE+F+ K     + E ++ I + P+    W+I  FS 
Sbjct:   166 LIPRSTFYNANEGYLDQDTGSFGAEIFIVKPAQ--QQEKVTFISNPPNNVFTWKILRFST 223

Query:   187 LRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLR 246
             L  +   S  F   D+ W++   PKG   G    L ++L           +  +    LR
Sbjct:   224 LEDKFYYSDDFLVEDRYWRLGFNPKGDGGGRPHALPIFLFAQGHKANAVATNTWGAVNLR 283

Query:   247 LLDQAQARHIAGKADFWFS-ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG 305
             L +Q    H    +  W+   S    G    +     N    G LV D  + EAE+    
Sbjct:   284 LKNQRSTNHRQIYSAAWYPIGSGYGVGVNNIILLADLNDASKGYLVNDAIIFEAEMVKVS 343

Query:   306 ISN 308
             I+N
Sbjct:   344 ITN 346

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2092329 AT3G20360 "AT3G20360" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 95/306 (31%), Positives = 162/306 (52%)

Query:    10 RSVSEAPPTHYTVKIQSFSLLLKNS-VEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHI 68
             + + E PP+ Y++K++SF+ L+K+   E+YES  F  G Y W LV+YP GNK+ N   HI
Sbjct:    59 KGLRERPPSSYSLKMESFNTLMKSVYTERYESRPFRVGRYNWTLVVYPKGNKNDNGTGHI 118

Query:    69 SVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFI 128
             S+Y+ ++N++      EV+   R ++ ++ +  +  +QD      RF  +KR WGF + +
Sbjct:   119 SLYVVLDNSTLTSQSEEVHVDLRFYVFNKKETKYFTIQDT--DVWRFSAIKRMWGFSKVL 176

Query:   129 PIKAFNDASNGFLLE-DTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKL 187
             P+  FN+  NG+L + D C FG +V +       K E  S+ K  PS +  W I+ +S L
Sbjct:   177 PLITFNNLKNGYLYDVDHCEFGVDVIIPPFYE--KSEVFSVTKSFPSPRFTWYIQGYSTL 234

Query:   188 RSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT--PGSKIYAEFTL 245
              ++   S+ F  G + W ++++  G     G +L++YL L     L   P  K+Y    L
Sbjct:   235 PTDYL-SEEFIIGGKSWNLRIFKNGFGAFEGKNLSLYLNLGPQELLKAKPYDKVYVRAKL 293

Query:   246 RLLDQ--AQARHIAGKA-DFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT 302
             R+ +Q  +Q+  +  +  D WFS      G+A ++  +       G LV D+ +V+  V 
Sbjct:   294 RVPNQFGSQSNLVLERPLDNWFSPQTIGWGYADFMPLSDLRNSSKGFLVNDMLVVQ--VA 351

Query:   303 VHGISN 308
             +  IS+
Sbjct:   352 MEEISS 357

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2179744 AT5G26260 "AT5G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 96/301 (31%), Positives = 150/301 (49%)

Query:     9 TRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHI 68
             TR + +  P+   V I SFS++ K+  E YES  FEA GYKW+LVLY  GN    +  HI
Sbjct:    52 TRELRDERPSSKIVTITSFSVI-KDRGEPYESSIFEAAGYKWRLVLYVKGNPKGGINNHI 110

Query:    69 SVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFI 128
             S+Y  +E T +L  GWEV    +LF+ ++    +L + D  G  +R++  K+EWGF + I
Sbjct:   111 SLYARIEETETLPRGWEVNVDLKLFVHNRKLKKYLSVTD--GTVKRYNDAKKEWGFTQLI 168

Query:   129 PIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLR 188
              +  F +A+ G+L++DT  FGAE+F+     T K E ++ I + P     W+I  FS L 
Sbjct:   169 SLPTFYNANEGYLVQDTASFGAEIFIVNP--TEKQEKVTFISNPPDNVFTWKILRFSTLE 226

Query:   189 SECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLL 248
              +   S  F  GD+ W++   PKG   G    L ++L           +  +    LRL 
Sbjct:   227 DKFYYSDDFLVGDRYWRLGFNPKGSGGGRPHALPIFLYAQGHKANAVVTNTWGAVNLRLK 286

Query:   249 DQAQARHIAGKADFWFSA-SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGIS 307
             +Q  + H    +  W+   S+   G    +  +       G +V D  + EAE+    ++
Sbjct:   287 NQRSSNHKQLYSAAWYPIRSDYGVGVNNIILMSELKDASKGYMVNDAIIFEAEMVKVSVT 346

Query:   308 N 308
             N
Sbjct:   347 N 347

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2055998 AT2G04170 "AT2G04170" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 94/293 (32%), Positives = 150/293 (51%)

Query:    17 PTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMEN 76
             P++  + I SFS++ K   E YES  FEAGGYKW+LVLY  GN++     HIS+Y+ +E 
Sbjct:   129 PSNKILTITSFSVI-KGRGEPYESSVFEAGGYKWRLVLYVNGNQNDGGNNHISLYVRIEE 187

Query:    77 TSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDA 136
             T SL  GWEV    +LF+ +  +  +LI++D  G  +R++  K+EWG+ + IP+  F D 
Sbjct:   188 TESLPKGWEVNVELKLFVYNGKQRKYLIVKD--GIVKRYNDAKKEWGYGKLIPLTTFLDT 245

Query:   137 SNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECCDSQV 196
             + G+L +D   FGAE+F     +    E ++ I + P+    W+I +FS L  +   S  
Sbjct:   246 NEGYLEQDIASFGAEIFSGT--AVQVQEKVTFISNPPNNVFTWKILHFSNLEDKFYYSDD 303

Query:   197 FSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHI 256
             F   D+ W++   PKG   G    + ++L           +  +    LRL +Q  + H 
Sbjct:   304 FLVEDRYWRLGFNPKGTGDGRSQAIPIFLYAQGHKPNAVATNTWGAVNLRLKNQRSSNHA 363

Query:   257 AGKADFWF-SASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN 308
                +  W+ + S+   G    +S   FN    G  V D  + EAE+    ++N
Sbjct:   364 QIYSAAWYPTRSDYGVGVNTIISLAEFNDASKGYSVNDSIIFEAEMVKVSVTN 416

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118465 AT4G09770 "AT4G09770" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 90/290 (31%), Positives = 153/290 (52%)

Query:    11 SVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISV 70
             ++ E  P+ Y +K+  FS + K S + YES DF+ GG+KW+L+ YPAG   +  K+H+S+
Sbjct:     3 TIREEAPSSYLMKLVGFSEV-KFSHQPYESADFDVGGHKWRLIFYPAGKLEEGGKDHVSI 61

Query:    71 YLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPI 130
             Y  +EN  +     ++ A  + F+ + N   + + QD  G  + +++ K+E GF + +  
Sbjct:    62 YARIENVGA---SMQIDAELKFFIYNHNNKQYSVFQD--GTMKHYNKEKKECGFAQMLLF 116

Query:   131 KAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSE 190
               FND  NG++  + C+ G E+FV K     K E +   ++ P  K  W+I +FS +  +
Sbjct:   117 SKFNDPKNGYIDGNACIVGVEIFVIKPIE--KVERVVFTQNPPENKFTWKISHFSYIGDK 174

Query:   191 -CCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLD 249
                 S  F  GD+KW++++ PKG +      L+VY+           S  YA+  LRLL+
Sbjct:   175 RYYYSDEFVVGDRKWRLKISPKGDKKVRA--LSVYVQAMAYLPNAVASSTYAKLRLRLLN 232

Query:   250 QAQARHIAGKADFWFSASNPE-SGWARYVSFTYFNKPGNGCLVKDVCLVE 298
             Q  + HI  +   ++S  N + SG +  +S    N    G LV+D  ++E
Sbjct:   233 QKNSNHIEKRVFHFYSRENGDGSGISELISVEDLNDESKGYLVEDSIVLE 282

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098318 AT3G28220 "AT3G28220" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 89/288 (30%), Positives = 147/288 (51%)

Query:    16 PPTHYTVKIQSF-SLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVK-EHISVYLA 73
             PP+ Y +KI+SF       + EKYES  FE+GGY W L++YP GN  +     ++S+Y+ 
Sbjct:    79 PPSTYCLKIESFIKFATSPNAEKYESRPFESGGYNWTLIVYPKGNIKEGAPLNYVSMYVQ 138

Query:    74 MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 133
             ++N++ L    EVYA  + F+ ++ +  +L  Q+     +RF   K  WG+    P    
Sbjct:   139 IDNSTLLNSPKEVYAEVKFFIYNRKEDKYLTYQETDA--KRFFLFKPYWGYGNVRPYTDV 196

Query:   134 NDASNGFLLE-DTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLRSECC 192
              + + G+L + D  +FG +VFV++  +  K E  S  K      + W + NFS L  +  
Sbjct:   197 ANPNAGWLFDGDNVLFGVDVFVTEVFN--KWEVFSFTKSLHDRLYKWTLPNFSSLEKQYY 254

Query:   193 DSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQ 252
              S  F  G + W +++YP G   G G  L++Y+   D   + P  KIY +  LR+++Q  
Sbjct:   255 VSDKFVIGGRSWALKVYPSGDGEGQGNSLSLYVVAVD---VKPYDKIYLKAKLRIINQRD 311

Query:   253 ARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAE 300
             ++H+  K + W   +N   G+ ++V F        G LV D   +E E
Sbjct:   312 SKHMEKKVESWSDQAN-SWGFQKFVPFADLKDTSKGLLVNDTLKMEIE 358

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

TAIR|locus:2053674 AT2G15710 "AT2G15710" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 94/276 (34%), Positives = 145/276 (52%)

Query:    11 SVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISV 70
             ++ E PP+ Y++KI   S L   + +KYES  F +GGY W+LV+YP GN+       IS+
Sbjct:    92 NLREHPPSSYSLKINKLSQL---TFDKYESHRFLSGGYNWRLVIYPKGNEKDKGSGFISM 148

Query:    71 YLAMENTS-SLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIP 129
             Y+  +NT  S     EV+A    F+ ++ +  +  +QD     +RF+ L+  WG  + + 
Sbjct:   149 YVEFDNTKVSSTSPMEVFAYIIFFVYNKKENKYFTIQDV--EVKRFNALRTVWGLSQVLS 206

Query:   130 IKAFNDASNGFLLE-DTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENFSKLR 188
             ++ FND  NG+  E + C FG +V V+   +  K E +S  +    +K  W +++FS L+
Sbjct:   207 LETFNDLENGYTFEGEQCEFGVDVMVASPIT--KWEVVSFDEKLDILKFSWSVKDFSVLK 264

Query:   189 SECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLL 248
              E   S+ FS G + W +Q+YPKG        L+++L L+ S TLT   KIY    LR+L
Sbjct:   265 EEFYVSERFSMGGRLWDLQMYPKGDPRRDKKWLSIFLRLSGSETLTVDEKIYVIAHLRVL 324

Query:   249 DQAQARHIAGKADFWFSASNPESGWARYVSFTYFNK 284
             D        G    WF   N   GW  Y+ F  F+K
Sbjct:   325 DPL------GN---WFRDRN--KGWG-YLEFLSFSK 348

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016590 ZW9 "AT1G58270" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 92/299 (30%), Positives = 147/299 (49%)

Query:     9 TRSVSEAPPTHYTVKIQSFSLLLKNSVE---KYESGDFEAGGYKWKLVLYPAGNKSKNVK 65
             T      PP  Y VK QSF  + K   E   KYES  F  GGY W L++YP      +  
Sbjct:    86 TTDTRTRPPNSYCVKFQSFVTMAKQVKENGGKYESRPFSVGGYNWTLLIYPVIYIPTDSG 145

Query:    66 EHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFD 125
              ++S+Y+ ++N+S + +  +VYA         +   + I Q+     +RFH  K++WG  
Sbjct:   146 GYVSIYVRVDNSSLITNPKDVYAEITFLAYKSSTDKYQISQETEA--QRFHLFKQQWGLL 203

Query:   126 EFIPIKAFNDASNGFLLE-DTCVFGAEVFVSKERSTGKGECLSMIKDAPSIKHVWRIENF 184
             +F+PI  F + + G+  E ++ VFG ++ + K       E  S  ++       WR+  F
Sbjct:   204 QFLPIYYFENPAYGYFFEGESVVFGVDINIVKPFENW--EVFSNEQNIRDPIFEWRLTKF 261

Query:   185 SKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFT 244
             S    +   S  FSSG + W +++YP G  + TG  L++YL L+D +      K Y E  
Sbjct:   262 STRFLDSYTSDSFSSGGRNWALKVYPNGVGNATGNSLSLYL-LSDQSN----DKGYVEAK 316

Query:   245 LRLLDQAQARHIAGKADFWFSASNPESGWA--RYVSFTYFNKPGNGCLVKDVCLVEAEV 301
             LR++DQ Q+ +   K   W +A+  E+GW   R++SF        G LV D   +E ++
Sbjct:   317 LRVIDQIQSNNFEKKVAAWPNAT--ENGWGFDRFLSFADIKNTSKGFLVNDTLKLEVQI 373

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.3__1915__AT3G17380.1 annotation not avaliable (309 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	2e-27
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	2e-24
cd03775	134	cd03775, MATH_Ubp21p, Ubiquitin-specific protease	2e-10
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	1e-09
pfam00917	116	pfam00917, MATH, MATH domain	3e-09
smart00061	95	smart00061, MATH, meprin and TRAF homology	3e-08
smart00061	95	smart00061, MATH, meprin and TRAF homology	1e-07
cd03774	139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	2e-05
cd03774	139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	2e-05
pfam00917	116	pfam00917, MATH, MATH domain	3e-05

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score =  103 bits (258), Expect = 2e-27
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 4/128 (3%)

Query: 176 KHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTP 235
           KH W+I NFS+L  E   S  F  G  KW+I++YP G    +G +L++YL L    +   
Sbjct: 2   KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDG-ESGDYLSLYLELDKGESDLE 60

Query: 236 GSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPES-GWARYVSFTYFNKPGNGCLVKDV 294
              + AEFTL+L++Q   + ++      F +      G+ +++S+          LV D 
Sbjct: 61  KWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSEKGSGWGFPKFISWDDLEDSYY--LVDDS 118

Query: 295 CLVEAEVT 302
             +E EV 
Sbjct: 119 LTIEVEVK 126

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 95.5 bits (238), Expect = 2e-24
 Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 10/134 (7%)

Query: 19  HYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTS 78
            +T KI +FS L     E   S  FE GGYKW++ +YP G+      +++S+YL ++   
Sbjct: 2   KHTWKIVNFSELEG---ESIYSPPFEVGGYKWRIRIYPNGDGES--GDYLSLYLELDKGE 56

Query: 79  SLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASN 138
           S    W V A F L L++QN G  L           F      WGF +FI      D  +
Sbjct: 57  SDLEKWSVRAEFTLKLVNQNGGKSLSKS---FTHVFFSEKGSGWGFPKFISWDDLED--S 111

Query: 139 GFLLEDTCVFGAEV 152
            +L++D+     EV
Sbjct: 112 YYLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 17/134 (12%)

Query: 18  THYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLA---- 73
             +T +I+++S L K    K  S  F+ GG++W+++L+P GN   +    +S+YL     
Sbjct: 1   QSFTWRIKNWSELEK----KVHSPKFKCGGFEWRILLFPQGN---SQTGGVSIYLEPHPE 53

Query: 74  MENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAF 133
            E  + L   W V A F L + +    +   +Q +  A  RF+   ++WGF  FI ++  
Sbjct: 54  EEEKAPLDEDWSVCAQFALVISNPGDPS---IQLSNVAHHRFNAEDKDWGFTRFIELRKL 110

Query: 134 NDASNGF---LLED 144
              +       LE+
Sbjct: 111 AHRTPDKPSPFLEN 124

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding. Length = 134

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 51/161 (31%), Positives = 68/161 (42%), Gaps = 13/161 (8%)

Query: 1   MGDEIDGFTRSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNK 60
           +G  +  F   V E     +T K++ +S L K    K ES  F  GG+ WK++L+P GN 
Sbjct: 22  IGSILPQFDPDVEELLEMSFTWKVKRWSELAK----KVESPPFSVGGHTWKIILFPQGNN 77

Query: 61  SKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLD-QNKGNFLILQDAMGAERRFHRLK 119
             NV    SVYL  E     + G + Y     F  D  N     I      +  RF    
Sbjct: 78  QCNV----SVYLEYEPQELEETGGKYYDCCAQFAFDISNPKYPTIEY-INKSHHRFSMES 132

Query: 120 REWGFDEFIPIKAFNDASNG---FLLEDTCVFGAEVFVSKE 157
            +WGF  FI +    + S G   FL E T V    V V K+
Sbjct: 133 TDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173

Length = 1089

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 16/125 (12%)

Query: 31  LKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQH-GWEVYAV 89
           +K     Y S   E  G  W+L +Y  G         + +YL  E     +  GW +   
Sbjct: 7   IKEGENYYTSPYEERFGIPWRLRIYRNGG-------FLGLYLHCEKGEKDELLGWSIETE 59

Query: 90  FRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFG 149
           F L L+  N  +             F +    +G+ +FI    ++D  N ++++DT +  
Sbjct: 60  FTLKLVSDNGKSLTKRNK----SHVFTKPT-GYGWGKFIS---WDDLENDYVVDDTIIIE 111

Query: 150 AEVFV 154
           AEV +
Sbjct: 112 AEVKI 116

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 14/108 (12%)

Query: 22  VKIQSFSLLLKNSV-EKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL 80
           V   +F  + +    E Y S   E     W+L +Y      KN    +S+YL  E     
Sbjct: 1   VLSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYR-----KN--GFLSLYLHCEKEECD 53

Query: 81  QHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFI 128
              W + A F L L+ QN G  L  +D    +  F +    WGF +FI
Sbjct: 54  SRKWSIEAEFTLKLVSQN-GKSLSKKD----KHVFEK-PSGWGFSKFI 95

Length = 95

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 177 HVWRIENFSKL-RSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTP 235
                +N S+L   E   S      +  W++++Y K         L++YL        + 
Sbjct: 2   LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRKN------GFLSLYLHCEKEECDSR 55

Query: 236 GSKIYAEFTLRLLDQ 250
              I AEFTL+L+ Q
Sbjct: 56  KWSIEAEFTLKLVSQ 70

Length = 95

>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 17/144 (11%)

Query: 20  YTVKIQSFSLLLKNSVEKYESGDFEAGG---YKWKLVLYPAGNKSKNVKEHISVYLAMEN 76
           Y   I +FS   +   E  +S  F +G     KW L + P G   ++ K+++S+YL +  
Sbjct: 7   YMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLSLYLLL-- 63

Query: 77  TSSLQHGW-EVYAVFRLFLLDQNKGNFLILQDAMGAER--RFHRLKREWGFDEFIPIKAF 133
              +     EV A F+  +L+           AM ++R  RF + K +WGF +FI     
Sbjct: 64  ---VSCPKSEVRAKFKFSILNAKGEET----KAMESQRAYRFVQGK-DWGFKKFIRRDFL 115

Query: 134 NDASNGFLLEDTCVFGAEVFVSKE 157
            D +NG L +D      EV V ++
Sbjct: 116 LDEANGLLPDDKLTLFCEVSVVQD 139

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family. Length = 139

>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 175 IKHVWRIENFSKLRSECCD---SQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALA 228
             ++W I NFS  R E  +   S  FSSG     KW +++ PKG    +  +L++YL L 
Sbjct: 5   FCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 64

Query: 229 DSTTLTPGSKIYAEFTLRLLDQAQARHIAGKAD-FWFSASNPESGWARYVSFTYFNKPGN 287
                 P S++ A+F   +L+       A ++   +      + G+ +++   +     N
Sbjct: 65  SC----PKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 120

Query: 288 GCLVKDVCLVEAEVTVHG 305
           G L  D   +  EV+V  
Sbjct: 121 GLLPDDKLTLFCEVSVVQ 138

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family. Length = 139

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 181 IENFSKLR--SECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYL-ALADSTTLTPGS 237
           I+NFSK++       S         W++++Y  G        L +YL           G 
Sbjct: 1   IKNFSKIKEGENYYTSPYEERFGIPWRLRIYRNGG------FLGLYLHCEKGEKDELLGW 54

Query: 238 KIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLV 297
            I  EFTL+L+     + +  +            GW +++S+       N  +V D  ++
Sbjct: 55  SIETEFTLKLVSD-NGKSLTKRNKSHVFTKPTGYGWGKFISWDDLE---NDYVVDDTIII 110

Query: 298 EAEVTV 303
           EAEV +
Sbjct: 111 EAEVKI 116

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.95
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.95
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.95
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.95
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.94
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.93
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.93
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.93
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.92
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.92
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.92
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.92
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.92
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.92
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.91
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.91
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.91
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.9
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.9
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.9
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.9
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.9
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.9
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.89
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.88
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.88
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.84
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.84
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.8
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.8
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.78
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.77
smart00061	95	MATH meprin and TRAF homology.	99.74
smart00061	95	MATH meprin and TRAF homology.	99.71
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.53
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.43
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	99.1
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	98.41
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	98.14
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	98.04
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.27
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.88

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.95  E-value=5.1e-27  Score=184.52  Aligned_cols=132  Identities=18%  Similarity=0.371  Sum_probs=110.2

Q ss_pred             CceEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCC-CCCCeEEEEEEecCCCCCCCCcEEEEEEEEEEE
Q 021593           17 PTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSK-NVKEHISVYLAMENTSSLQHGWEVYAVFRLFLL   95 (310)
Q Consensus        17 ~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~-~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l~   95 (310)
                      .|+|+|+|+|||.+    ++.++|+.|.+||++|+|.+||+|.... +..+||||||.|.+... ...|++.|+|+|+|+
T Consensus         2 ~~~~~~~I~~~S~l----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~-~~~w~i~a~~~~~l~   76 (137)
T cd03772           2 EATFSFTVERFSRL----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESD-STSWSCHAQAVLRII   76 (137)
T ss_pred             CcEEEEEECCcccC----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCC-CCCCeEEEEEEEEEE
Confidence            58999999999998    4789999999999999999999996421 34589999999976542 348999999999999


Q ss_pred             eCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEee
Q 021593           96 DQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK  156 (310)
Q Consensus        96 n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~  156 (310)
                      |+++........   ..+.|......|||.+||+|++|+++.++||+||+|+|+|+|++-+
T Consensus        77 ~~~~~~~~~~~~---~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~  134 (137)
T cd03772          77 NYKDDEPSFSRR---ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA  134 (137)
T ss_pred             cCCCCcccEEEe---eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence            998543333222   4567876667899999999999987789999999999999998765

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.95  E-value=9e-27  Score=183.10  Aligned_cols=130  Identities=16%  Similarity=0.309  Sum_probs=110.0

Q ss_pred             CceEEEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCC--CCCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEcCC
Q 021593          174 SIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRH--GTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQA  251 (310)
Q Consensus       174 ~~~~~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~--~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~  251 (310)
                      .++++|+|.|||.+ ++.++|+.|.+||++|+|.+||+|...  +..+++|+||.|.... ....|++.|+|+|+|+||+
T Consensus         2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~   79 (137)
T cd03772           2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYK   79 (137)
T ss_pred             CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCC
Confidence            46899999999998 678999999999999999999999654  2347999999997643 3347999999999999998


Q ss_pred             CC-cceeccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEe
Q 021593          252 QA-RHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG  305 (310)
Q Consensus       252 ~~-~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~  305 (310)
                      +. .+......+.|......|||++||+|++|+++.+|||+||+|+|||+|+|-.
T Consensus        80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~  134 (137)
T cd03772          80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA  134 (137)
T ss_pred             CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence            53 3444455578877677999999999999987668999999999999999865

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.95  E-value=7.5e-27  Score=182.72  Aligned_cols=125  Identities=27%  Similarity=0.577  Sum_probs=106.5

Q ss_pred             eEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC----CCCCcEEEEEEEEEE
Q 021593           19 HYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS----LQHGWEVYAVFRLFL   94 (310)
Q Consensus        19 ~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~----~~~~w~~~~~f~~~l   94 (310)
                      +|+|+|.|||.+    ++.+.|++|.+|||+|+|.+||+|..   ..+|+||||.+.+.+.    .+.+|.+.|+|+|.|
T Consensus         2 ~f~w~I~~fS~~----~~~~~S~~F~vGG~~W~l~~yP~G~~---~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l   74 (134)
T cd03775           2 SFTWRIKNWSEL----EKKVHSPKFKCGGFEWRILLFPQGNS---QTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVI   74 (134)
T ss_pred             cEEEEECCcccC----CcceeCCCEEECCeeEEEEEeCCCCC---CCCeEEEEEEecCcccccccCCCCCeEEEEEEEEE
Confidence            699999999996    57999999999999999999999975   2789999999976543    256899999999999


Q ss_pred             EeCCCCceEEeeccccceeeccCCCccccccceeeccccccC----CCCeeecCEEEEEEEEE
Q 021593           95 LDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDA----SNGFLLEDTCVFGAEVF  153 (310)
Q Consensus        95 ~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~----~~~yl~dD~l~i~~~v~  153 (310)
                      +||.++.......   ..+.|+....+|||.+||++++|++|    ++|||+||+|+|+|.|+
T Consensus        75 ~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          75 SNPGDPSIQLSNV---AHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             EcCCCCccceEcc---ceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            9997655433333   57899877788999999999999954    68999999999999874

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.95  E-value=9.2e-27  Score=183.57  Aligned_cols=134  Identities=28%  Similarity=0.443  Sum_probs=111.1

Q ss_pred             CCCceEEEEEcccccccccccceEEcCcEEEcCe---eEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEE
Q 021593           15 APPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGY---KWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFR   91 (310)
Q Consensus        15 ~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~---~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~   91 (310)
                      +..-+|+|+|+|||.+++..++.+.|++|.+||+   +|+|.+||+|.. ++..+|+||||.+.+..    .+++.|+|+
T Consensus         2 ~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~-~~~~~~iSlyL~l~~~~----~~~v~a~f~   76 (139)
T cd03774           2 VVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKFK   76 (139)
T ss_pred             ceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCC-CCCCCeEEEEEEEccCC----CCcEEEEEE
Confidence            4567899999999998654477999999999984   999999999986 45678999999997532    367999999


Q ss_pred             EEEEeCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEee
Q 021593           92 LFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK  156 (310)
Q Consensus        92 ~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~  156 (310)
                      |.|+|+++.........  ..+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus        77 ~~l~n~~~~~~~~~~~~--~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~  138 (139)
T cd03774          77 FSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ  138 (139)
T ss_pred             EEEEecCCCeeeeeccc--CcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence            99999987654332221  3467765 47899999999999987778999999999999999985

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.94  E-value=7.1e-26  Score=177.21  Aligned_cols=124  Identities=22%  Similarity=0.444  Sum_probs=106.2

Q ss_pred             eEEEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCC----CCCCCeEEEEEEEEEEcCC
Q 021593          176 KHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTT----LTPGSKIYAEFTLRLLDQA  251 (310)
Q Consensus       176 ~~~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~----~~~~w~~~~~~~~~l~~~~  251 (310)
                      +|+|+|.+||.+ ++.+.|++|.+||++|+|.+||+|+..  .+|+|+||++.....    .+.+|++.|+|+|+|+||.
T Consensus         2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~   78 (134)
T cd03775           2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG   78 (134)
T ss_pred             cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence            589999999996 478999999999999999999999865  579999999976443    2468999999999999997


Q ss_pred             CCc-ceeccceeecCCCCCCCChhcccCccccCCC----CCCeeeCCEEEEEEEEE
Q 021593          252 QAR-HIAGKADFWFSASNPESGWARYVSFTYFNKP----GNGCLVKDVCLVEAEVT  302 (310)
Q Consensus       252 ~~~-~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~----~~~~l~dD~l~i~~~v~  302 (310)
                      ++. +......+.|+....+|||.+||++++|++|    ++|||+||+|+|+|.|.
T Consensus        79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            654 3445567899887789999999999999954    57999999999999873

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.93  E-value=1.8e-25  Score=176.10  Aligned_cols=134  Identities=20%  Similarity=0.292  Sum_probs=106.4

Q ss_pred             ceEEEEEcccccccc-c-ccc--eEEcCcE--EEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEEEEEE
Q 021593           18 THYTVKIQSFSLLLK-N-SVE--KYESGDF--EAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEVYAVF   90 (310)
Q Consensus        18 ~~~~~~I~nfs~~~~-~-~~~--~~~S~~f--~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~~~~f   90 (310)
                      |.|.|+|.+|+++++ . .++  .++|++|  .++||+|+|.+||||.+ .+.++|+||||+++.++.+ -..|++.+++
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~   79 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWPFRQRV   79 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCccccccCcceEEEE
Confidence            689999999999975 2 355  7999999  88999999999999987 5678899999999986443 2479999999


Q ss_pred             EEEEEeCCCCceEEeec-cc-cceeeccCC----CccccccceeeccccccCCCCeeecCEEEEEEEE
Q 021593           91 RLFLLDQNKGNFLILQD-AM-GAERRFHRL----KREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV  152 (310)
Q Consensus        91 ~~~l~n~~~~~~~~~~~-~~-~~~~~F~~~----~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v  152 (310)
                      +|+|+||++........ .. ...+.|+..    +..||+.+||++++|+.+..+||.||+|.|+|.|
T Consensus        80 tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          80 TLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             EEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            99999998544321100 00 023568654    4579999999999998433599999999999977

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.93  E-value=7e-25  Score=172.84  Aligned_cols=128  Identities=27%  Similarity=0.459  Sum_probs=106.5

Q ss_pred             CceEEEEEccccccC---CCeeecccEEeCCe---EEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 021593          174 SIKHVWRIENFSKLR---SECCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRL  247 (310)
Q Consensus       174 ~~~~~w~i~~fs~~~---~~~~~S~~f~~~g~---~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l  247 (310)
                      .-+|+|+|.+||.+.   ++.+.|+.|.+||+   +|+|++||+|...+..+|+||||++....    .+++.|+|+|.|
T Consensus         4 ~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~----~~~v~a~f~~~l   79 (139)
T cd03774           4 KFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFSI   79 (139)
T ss_pred             EEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC----CCcEEEEEEEEE
Confidence            357999999999864   67899999999984   99999999998655678999999997532    367999999999


Q ss_pred             EcCCCCcce--eccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEee
Q 021593          248 LDQAQARHI--AGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI  306 (310)
Q Consensus       248 ~~~~~~~~~--~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~  306 (310)
                      +||++++..  .....+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|+++
T Consensus        80 ~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~~  139 (139)
T cd03774          80 LNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  139 (139)
T ss_pred             EecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEcC
Confidence            999876532  2233467764 578999999999999876679999999999999999863

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.93  E-value=4.3e-25  Score=173.10  Aligned_cols=135  Identities=22%  Similarity=0.278  Sum_probs=104.3

Q ss_pred             ceEEEEEccccccccc--c--cceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCcEEEEEE
Q 021593           18 THYTVKIQSFSLLLKN--S--VEKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS-LQHGWEVYAVF   90 (310)
Q Consensus        18 ~~~~~~I~nfs~~~~~--~--~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~-~~~~w~~~~~f   90 (310)
                      |+|+|+|.||++..+.  .  ...++||+|..+  ||+|+|.+||||.+ .+.++|+||||+++.++. ....|++.+++
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~   79 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDG-AGKGTHISLFFVIMKGEYDALLPWPFRHKV   79 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCcceEEEE
Confidence            7899999999987652  2  247999999886  99999999999987 567889999999997643 23479999999


Q ss_pred             EEEEEeCCCCceEEeeccc-cceeecc----CCCccccccceeeccccccCCCCeeecCEEEEEEEEE
Q 021593           91 RLFLLDQNKGNFLILQDAM-GAERRFH----RLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF  153 (310)
Q Consensus        91 ~~~l~n~~~~~~~~~~~~~-~~~~~F~----~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~  153 (310)
                      +|+|+||.+.......... ...+.|+    ..+..||+.+||++++|+.+..+||+||+++|+|+|.
T Consensus        80 tfsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~  147 (147)
T cd03779          80 TFMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD  147 (147)
T ss_pred             EEEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence            9999999764432111100 0135686    3345799999999999983223999999999999873

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.92  E-value=1e-24  Score=177.89  Aligned_cols=136  Identities=17%  Similarity=0.219  Sum_probs=107.2

Q ss_pred             CCCceEEEEEcccccccc-c-ccc--eEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCcEEE
Q 021593           15 APPTHYTVKIQSFSLLLK-N-SVE--KYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS-LQHGWEVY   87 (310)
Q Consensus        15 ~~~~~~~~~I~nfs~~~~-~-~~~--~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~-~~~~w~~~   87 (310)
                      ...|+|.|+|.||++.++ . .++  .++|++|.+|  ||+|+|.+||||.+ .+.++|+||||+++.++. ....|++.
T Consensus        36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g-~~~~~~iSvyl~L~~ge~D~~L~WP~~  114 (186)
T cd03777          36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK  114 (186)
T ss_pred             ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCCcee
Confidence            446999999999999864 2 344  7999999999  99999999999987 567889999999998653 23479999


Q ss_pred             EEEEEEEEeCCCCceEEeec--cccceeeccC-C---CccccccceeeccccccCCCCeeecCEEEEEEEEE
Q 021593           88 AVFRLFLLDQNKGNFLILQD--AMGAERRFHR-L---KREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF  153 (310)
Q Consensus        88 ~~f~~~l~n~~~~~~~~~~~--~~~~~~~F~~-~---~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~  153 (310)
                      ++++|+|+||.+........  .......|+. .   +..||+..||++++|+  .++||+||+|.|+|.|.
T Consensus       115 ~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~  184 (186)
T cd03777         115 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD  184 (186)
T ss_pred             EEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence            99999999997532211100  0002245762 2   3579999999999999  78999999999999885

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.92  E-value=4.3e-25  Score=175.57  Aligned_cols=133  Identities=25%  Similarity=0.301  Sum_probs=104.2

Q ss_pred             ceEEEEEcccccccc-c-ccc--eEEcCcEEE--cCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCcEEEEEE
Q 021593           18 THYTVKIQSFSLLLK-N-SVE--KYESGDFEA--GGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS-LQHGWEVYAVF   90 (310)
Q Consensus        18 ~~~~~~I~nfs~~~~-~-~~~--~~~S~~f~~--~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~-~~~~w~~~~~f   90 (310)
                      |+|.|+|.|||.+++ + .++  .++|++|.+  |||+|+|.+||||.. ++..+||||||+++.+.. ...+|++.++|
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~-~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~   79 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPE-ARCPNYISLFVHLMQGENDSHLDWPFQGTI   79 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCcccCCccccee
Confidence            689999999998754 2 355  488999986  799999999999987 567889999999987654 24579999999


Q ss_pred             EEEEEeCCCCceEEee--ccccceeeccC-----CCccccccceeeccccccCCCCeeecCEEEEEEEEE
Q 021593           91 RLFLLDQNKGNFLILQ--DAMGAERRFHR-----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF  153 (310)
Q Consensus        91 ~~~l~n~~~~~~~~~~--~~~~~~~~F~~-----~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~  153 (310)
                      +|+|+||.++......  ........|..     ....|||.+||++++|+  .++||+||+|+|+|+|.
T Consensus        80 ~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~I~c~V~  147 (147)
T cd03776          80 TLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLL--QRGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhh--hCCCccCCEEEEEEEEC
Confidence            9999999864332110  00002346763     23579999999999999  67899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.92  E-value=7.7e-25  Score=171.20  Aligned_cols=127  Identities=24%  Similarity=0.427  Sum_probs=104.0

Q ss_pred             CCCceEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEEEEE
Q 021593           15 APPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFL   94 (310)
Q Consensus        15 ~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l   94 (310)
                      +..++++|+|.|||.+++ .++.++|++|.+|||+|+|.+||+|.. ++..+||||||.+.+..    .|.+.++|+|+|
T Consensus         2 ~~~~~~~~~I~~fS~~~~-~~~~~~S~~F~vgG~~W~i~~yP~G~~-~~~~~~lSl~L~l~~~~----~~~~~~~~~l~l   75 (132)
T cd03773           2 PPYDSATFTLENFSTLRQ-SADPVYSDPLNVDGLCWRLKVYPDGNG-EVRGNFLSVFLELCSGL----GEASKYEYRVEM   75 (132)
T ss_pred             CCCcccEEEECChhhhhc-CCcceeCCCeEeCCccEEEEEECCCCC-CCCCCEEEEEEEeecCC----CCceeEEEEEEE
Confidence            356789999999999864 267899999999999999999999986 45678999999987642    367889999999


Q ss_pred             EeCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeec--CEEEEEEEEE
Q 021593           95 LDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLE--DTCVFGAEVF  153 (310)
Q Consensus        95 ~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~d--D~l~i~~~v~  153 (310)
                      +||.++.......   ..+.|.. ..+|||.+||++++|.  ++|||.|  |+|+|+|.|+
T Consensus        76 lnq~~~~~~~~~~---~~~~f~~-~~~wG~~~Fi~~~~L~--~~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          76 VHQANPTKNIKRE---FASDFEV-GECWGYNRFFRLDLLI--NEGYLLPENDTLILRFSVR  130 (132)
T ss_pred             EcCCCCccceEEe---ccccccC-CCCcCHHHhccHHHHh--hCCCcCCCCCEEEEEEEEe
Confidence            9995333333222   4567766 4679999999999998  5899999  9999999885

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.92  E-value=8.6e-25  Score=174.53  Aligned_cols=133  Identities=26%  Similarity=0.368  Sum_probs=104.4

Q ss_pred             ceEEEEEcccccccc----cccceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEEEEEE
Q 021593           18 THYTVKIQSFSLLLK----NSVEKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEVYAVF   90 (310)
Q Consensus        18 ~~~~~~I~nfs~~~~----~~~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~~~~f   90 (310)
                      |+|+|+|.|||.+++    ..++.++|++|.+|  ||+|+|.+||+|.. ++..+||||||++.++... ...|++.++|
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~-~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~   79 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDG-TGKGTHLSLFVHVMKGEYDALLEWPFRGKI   79 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCccccCCccceE
Confidence            689999999999865    13578999999999  99999999999986 4567899999999876542 4579999999


Q ss_pred             EEEEEeCCCC--ceEEeec--cccceeecc-----CCCccccccceeeccccccCCCCeeecCEEEEEEEEE
Q 021593           91 RLFLLDQNKG--NFLILQD--AMGAERRFH-----RLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF  153 (310)
Q Consensus        91 ~~~l~n~~~~--~~~~~~~--~~~~~~~F~-----~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~  153 (310)
                      +|.|+||.++  .......  .......|.     ....+|||.+||++++|+  +.+||+||+|+|+|+|.
T Consensus        80 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~v~  149 (149)
T cd00270          80 TLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLE--SRGYVKDDTLFIKVEVD  149 (149)
T ss_pred             EEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhc--cCCCEeCCEEEEEEEEC
Confidence            9999999874  1211100  000123454     134679999999999999  56899999999999873

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.92  E-value=1e-24  Score=174.28  Aligned_cols=133  Identities=21%  Similarity=0.302  Sum_probs=105.1

Q ss_pred             ceEEEEEcccccccc---c-ccceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCcEEEEEE
Q 021593           18 THYTVKIQSFSLLLK---N-SVEKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQ-HGWEVYAVF   90 (310)
Q Consensus        18 ~~~~~~I~nfs~~~~---~-~~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~-~~w~~~~~f   90 (310)
                      |.|.|+|.|||.+++   . .++.+.|++|.+|  ||+|+|.+||||.. .+..+|+|+||+++.++... ..|++.++|
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~   79 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNG-SGEGSHLSVYIRVLPGEYDNLLEWPFSHRI   79 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCC-CCCCCEEEEEEEEecCCcccccCCceeeEE
Confidence            689999999999875   2 2578999999999  99999999999987 56788999999999865433 489999999


Q ss_pred             EEEEEeCCCCc--e--EEeec--cccceeeccC--------CCccccccceeeccccccCCCCeeecCEEEEEEEEE
Q 021593           91 RLFLLDQNKGN--F--LILQD--AMGAERRFHR--------LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF  153 (310)
Q Consensus        91 ~~~l~n~~~~~--~--~~~~~--~~~~~~~F~~--------~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~  153 (310)
                      +|+|+||.+..  .  .....  .......|+.        ...+||+..||++++|+  .++||+||+|+|+|+|.
T Consensus        80 ~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~Irc~v~  154 (154)
T cd03781          80 TFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLK--KRNYIKDDAIFLRASVE  154 (154)
T ss_pred             EEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHh--hCCcccCCEEEEEEEeC
Confidence            99999998641  1  11000  0001345552        33569999999999999  68999999999999873

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.92  E-value=1.7e-24  Score=169.23  Aligned_cols=124  Identities=23%  Similarity=0.437  Sum_probs=105.0

Q ss_pred             CCCceEEEEEccccccC--CCeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEc
Q 021593          172 APSIKHVWRIENFSKLR--SECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLD  249 (310)
Q Consensus       172 ~~~~~~~w~i~~fs~~~--~~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~  249 (310)
                      |+.++++|+|.+||.+.  ++.+.|+.|.++|++|+|.+||+|+..+.++|||+||.+...    ..|.+.++|+|+|+|
T Consensus         2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~----~~~~~~~~~~l~lln   77 (132)
T cd03773           2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG----LGEASKYEYRVEMVH   77 (132)
T ss_pred             CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC----CCCceeEEEEEEEEc
Confidence            67788999999999985  568999999999999999999999876667899999998763    136788999999999


Q ss_pred             CCC-CcceeccceeecCCCCCCCChhcccCccccCCCCCCeeeC--CEEEEEEEEE
Q 021593          250 QAQ-ARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVK--DVCLVEAEVT  302 (310)
Q Consensus       250 ~~~-~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~d--D~l~i~~~v~  302 (310)
                      |.+ .++......+.|.. ..+|||.+||++++|++  +|||+|  |+|+|+|.|.
T Consensus        78 q~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          78 QANPTKNIKREFASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR  130 (132)
T ss_pred             CCCCccceEEeccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence            954 33555555677865 46799999999999986  799999  9999999985

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.91  E-value=5e-24  Score=167.92  Aligned_cols=128  Identities=24%  Similarity=0.355  Sum_probs=104.6

Q ss_pred             ceEEEEEccccccC-----CC--eeecccE--EeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeEEEEEE
Q 021593          175 IKHVWRIENFSKLR-----SE--CCDSQVF--SSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAEFT  244 (310)
Q Consensus       175 ~~~~w~i~~fs~~~-----~~--~~~S~~f--~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~~~  244 (310)
                      +.++|+|.+|++++     ++  .+.|+.|  .++||+|+|++||+|.+.+.++|||+||+++..+.+ ...|++.++++
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t   80 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT   80 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence            46899999999986     34  7999999  899999999999999988788899999999875332 35799999999


Q ss_pred             EEEEcCCCCc-ce--ec---cceeecCCC----CCCCChhcccCccccCCCCCCeeeCCEEEEEEEEE
Q 021593          245 LRLLDQAQAR-HI--AG---KADFWFSAS----NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT  302 (310)
Q Consensus       245 ~~l~~~~~~~-~~--~~---~~~~~f~~~----~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~  302 (310)
                      |.|+||.+.. ++  ..   .....|...    +.+||+++||++++|+.++.+||+||+|+|+|.|.
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~  148 (148)
T cd03780          81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD  148 (148)
T ss_pred             EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence            9999997542 21  11   113568654    56799999999999986445999999999999873

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.91  E-value=5.3e-24  Score=166.95  Aligned_cols=128  Identities=20%  Similarity=0.328  Sum_probs=102.7

Q ss_pred             ceEEEEEccccccC-----C--CeeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCC-CCCCCCeEEEEEE
Q 021593          175 IKHVWRIENFSKLR-----S--ECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADST-TLTPGSKIYAEFT  244 (310)
Q Consensus       175 ~~~~w~i~~fs~~~-----~--~~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~-~~~~~w~~~~~~~  244 (310)
                      +.++|+|.||+++.     +  ..++||.|...  ||+|+|.+||+|.+.+.++|+|+||+++..+ +....|++.++++
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t   80 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT   80 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence            46899999999765     1  36999999854  9999999999999877788999999998753 3334799999999


Q ss_pred             EEEEcCCCCccee--ccc---eeecC----CCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEE
Q 021593          245 LRLLDQAQARHIA--GKA---DFWFS----ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT  302 (310)
Q Consensus       245 ~~l~~~~~~~~~~--~~~---~~~f~----~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~  302 (310)
                      |.|+||.+.....  ...   .+.|+    ..+.+||+++||++++|+.+..+||+||+++|+|+|.
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~  147 (147)
T cd03779          81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD  147 (147)
T ss_pred             EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence            9999997644321  111   25686    3456799999999999986334899999999999984

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.91  E-value=5.9e-24  Score=169.70  Aligned_cols=126  Identities=24%  Similarity=0.407  Sum_probs=102.3

Q ss_pred             ceEEEEEccccccC-------CCeeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeEEEEEE
Q 021593          175 IKHVWRIENFSKLR-------SECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAEFT  244 (310)
Q Consensus       175 ~~~~w~i~~fs~~~-------~~~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~~~  244 (310)
                      +.|+|+|.+|+.++       ++.+.|+.|.+|  |++|+|++||+|...+.++|+||||++.+...+ ...|++.++|+
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~   80 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT   80 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence            47999999999974       358999999999  999999999999876667899999999875432 45799999999


Q ss_pred             EEEEcCCCC---cceecc-----ceeecC-----CCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEE
Q 021593          245 LRLLDQAQA---RHIAGK-----ADFWFS-----ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT  302 (310)
Q Consensus       245 ~~l~~~~~~---~~~~~~-----~~~~f~-----~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~  302 (310)
                      |.|+||.++   ++....     ....|.     ....+|||.+||++++|++  .|||+||+|+|+|+|.
T Consensus        81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~  149 (149)
T cd00270          81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD  149 (149)
T ss_pred             EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence            999999874   222111     123454     1357899999999999986  5899999999999984

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.90  E-value=1.9e-23  Score=165.38  Aligned_cols=130  Identities=22%  Similarity=0.331  Sum_probs=107.1

Q ss_pred             CCCceEEEEEccccccCC-------CeeecccEE--eCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCC-CCCeEEE
Q 021593          172 APSIKHVWRIENFSKLRS-------ECCDSQVFS--SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYA  241 (310)
Q Consensus       172 ~~~~~~~w~i~~fs~~~~-------~~~~S~~f~--~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~  241 (310)
                      ...+.++|+|.||+++..       ..++||.|.  .+||+|+|++||+|++.+++.|||+|+++++++.++ ..|++..
T Consensus        16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~   95 (164)
T cd03778          16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ   95 (164)
T ss_pred             ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence            346999999999998761       378999887  358999999999999988889999999999987766 7899999


Q ss_pred             EEEEEEEcCCCCcceeccce-----eecC----CCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEE
Q 021593          242 EFTLRLLDQAQARHIAGKAD-----FWFS----ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT  302 (310)
Q Consensus       242 ~~~~~l~~~~~~~~~~~~~~-----~~f~----~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~  302 (310)
                      +++|+|+||.+++++.....     ..|.    ..+.+|||+.|+++++|+.+ .+||+||+|.|+|.|.
T Consensus        96 ~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~Vd  164 (164)
T cd03778          96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIVD  164 (164)
T ss_pred             EEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEEC
Confidence            99999999987655532221     1342    34568999999999999864 5999999999999873

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.90  E-value=3.1e-23  Score=164.20  Aligned_cols=136  Identities=22%  Similarity=0.318  Sum_probs=106.7

Q ss_pred             CCCceEEEEEccccccccc--c--cceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCcEEE
Q 021593           15 APPTHYTVKIQSFSLLLKN--S--VEKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQ-HGWEVY   87 (310)
Q Consensus        15 ~~~~~~~~~I~nfs~~~~~--~--~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~-~~w~~~   87 (310)
                      ...|+|+|+|.||+++.+.  .  ...++||+|..+  ||+|+|.+||||.+ .+.+.|||||+++++++.++ .+|++.
T Consensus        16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g-~~~g~~LSly~~l~~Ge~D~~L~WPf~   94 (164)
T cd03778          16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN   94 (164)
T ss_pred             ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEecCCcCcccCCcee
Confidence            4479999999999998752  2  347999999764  89999999999987 57788999999999998766 799999


Q ss_pred             EEEEEEEEeCCCCceEEeecc-ccceeeccC----CCccccccceeeccccccCCCCeeecCEEEEEEEE
Q 021593           88 AVFRLFLLDQNKGNFLILQDA-MGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV  152 (310)
Q Consensus        88 ~~f~~~l~n~~~~~~~~~~~~-~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v  152 (310)
                      .+++|+|+||++..+....-. -.....|.+    .+..|||..|+++++|..+ .+||+||+|.|+|.|
T Consensus        95 ~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V  163 (164)
T cd03778          95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV  163 (164)
T ss_pred             eEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence            999999999986443221000 001113532    3457999999999999842 699999999999977

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.90  E-value=3.6e-23  Score=168.78  Aligned_cols=129  Identities=22%  Similarity=0.376  Sum_probs=105.4

Q ss_pred             CCceEEEEEccccccC-----CC--eeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCC-CCCCCCeEEEE
Q 021593          173 PSIKHVWRIENFSKLR-----SE--CCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADST-TLTPGSKIYAE  242 (310)
Q Consensus       173 ~~~~~~w~i~~fs~~~-----~~--~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~-~~~~~w~~~~~  242 (310)
                      ..+.|+|+|.+|+..+     ++  .++|+.|.++  ||+|+|.+||+|.+.+.++|+|+||++++++ +....|++.++
T Consensus        37 ~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~~  116 (186)
T cd03777          37 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK  116 (186)
T ss_pred             cceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeEE
Confidence            3699999999999875     33  7999999999  9999999999999877788999999998753 33357999999


Q ss_pred             EEEEEEcCCCC-ccee-----ccceeecC-CC---CCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEE
Q 021593          243 FTLRLLDQAQA-RHIA-----GKADFWFS-AS---NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTV  303 (310)
Q Consensus       243 ~~~~l~~~~~~-~~~~-----~~~~~~f~-~~---~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i  303 (310)
                      ++|.|+||.+. .++.     ......|. ..   +.+||+++||++++|+.  .+||+||+|+|+|.|..
T Consensus       117 ~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~~  185 (186)
T cd03777         117 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT  185 (186)
T ss_pred             EEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEec
Confidence            99999999752 1211     11224576 22   45799999999999986  78999999999999863

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.90  E-value=2.5e-23  Score=166.28  Aligned_cols=126  Identities=23%  Similarity=0.335  Sum_probs=102.4

Q ss_pred             ceEEEEEccccccC-------CCeeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCC-CCCeEEEEEE
Q 021593          175 IKHVWRIENFSKLR-------SECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYAEFT  244 (310)
Q Consensus       175 ~~~~w~i~~fs~~~-------~~~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~~~  244 (310)
                      +.|.|+|.+|+.++       ++.+.|+.|.++  |++|+|++||+|...+.++|+|+||++++.+.+. ..|++.++++
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~   80 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT   80 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence            47899999999875       257999999999  9999999999998877788999999999854333 4799999999


Q ss_pred             EEEEcCCCC--c---ceec-----cceeecCC--------CCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEE
Q 021593          245 LRLLDQAQA--R---HIAG-----KADFWFSA--------SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT  302 (310)
Q Consensus       245 ~~l~~~~~~--~---~~~~-----~~~~~f~~--------~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~  302 (310)
                      |+|+||.++  .   ++..     .....|+.        .+.+||+.+||++++|+.  .+||+||+|+|+|+|.
T Consensus        81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~  154 (154)
T cd03781          81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE  154 (154)
T ss_pred             EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence            999999764  1   1111     11234542        345799999999999996  6899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.90  E-value=3.1e-23  Score=165.51  Aligned_cols=132  Identities=21%  Similarity=0.321  Sum_probs=101.1

Q ss_pred             CceEEEEEccccccc-cc-ccceEEcCcE-EEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCcE-EEEEEE
Q 021593           17 PTHYTVKIQSFSLLL-KN-SVEKYESGDF-EAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS-LQHGWE-VYAVFR   91 (310)
Q Consensus        17 ~~~~~~~I~nfs~~~-~~-~~~~~~S~~f-~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~-~~~~w~-~~~~f~   91 (310)
                      +..|+|+|.|||+++ +. .++.++|++| .+|||+|+|.+||||.. + ..+||||||++++++. ...+|+ +.++++
T Consensus         1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~-~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t   78 (167)
T cd03771           1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTE-S-YPGYTGLYFHLCSGENDDVLEWPCPNRQAT   78 (167)
T ss_pred             CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCC-C-CCCcceEEEEEecCCccccccCcceeEEEE
Confidence            468999999999996 33 4778999998 99999999999999987 4 6889999999987644 346799 589999


Q ss_pred             EEEEeCCCCc---eEEee----cc---c--cceeeccCC-----------------CccccccceeeccccccCCCCeee
Q 021593           92 LFLLDQNKGN---FLILQ----DA---M--GAERRFHRL-----------------KREWGFDEFIPIKAFNDASNGFLL  142 (310)
Q Consensus        92 ~~l~n~~~~~---~~~~~----~~---~--~~~~~F~~~-----------------~~~~G~~~fi~~~~l~~~~~~yl~  142 (310)
                      |+|+||.+..   .+...    +.   .  .....|++.                 ..+|||..||++++|.  ..+||+
T Consensus        79 ~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~--~r~ylk  156 (167)
T cd03771          79 MTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLR--RRDFLK  156 (167)
T ss_pred             EEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhc--cCCCCc
Confidence            9999997421   11110    10   0  000113321                 2479999999999999  677999


Q ss_pred             cCEEEEEEEE
Q 021593          143 EDTCVFGAEV  152 (310)
Q Consensus       143 dD~l~i~~~v  152 (310)
                      ||+|.|++++
T Consensus       157 ~dtl~i~~~~  166 (167)
T cd03771         157 GDDLIILLDF  166 (167)
T ss_pred             CCEEEEEEEe
Confidence            9999999986

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.90  E-value=1.4e-23  Score=166.93  Aligned_cols=126  Identities=22%  Similarity=0.292  Sum_probs=100.9

Q ss_pred             ceEEEEEccccccC-----CC--eeecccEEe--CCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCC-CCCCCeEEEEEE
Q 021593          175 IKHVWRIENFSKLR-----SE--CCDSQVFSS--GDQKWQIQLYPKGRRHGTGTHLAVYLALADSTT-LTPGSKIYAEFT  244 (310)
Q Consensus       175 ~~~~w~i~~fs~~~-----~~--~~~S~~f~~--~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~-~~~~w~~~~~~~  244 (310)
                      +.|+|+|.+|+.++     ++  .+.|+.|.+  +|++|+|++||+|...+..+|||+||+++.... ...+|++.++++
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~   80 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT   80 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence            47999999999754     33  488999985  799999999999998777789999999987543 345799999999


Q ss_pred             EEEEcCCCCc-cee-----ccceeecCC-----CCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEE
Q 021593          245 LRLLDQAQAR-HIA-----GKADFWFSA-----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT  302 (310)
Q Consensus       245 ~~l~~~~~~~-~~~-----~~~~~~f~~-----~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~  302 (310)
                      |.|+||.++. ++.     ......|..     .+.+|||.+||++++|+.  .+||+||+|+|+|+|.
T Consensus        81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~  147 (147)
T cd03776          81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence            9999998632 221     112245653     346799999999999986  5899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.89  E-value=1.5e-22  Score=161.65  Aligned_cols=126  Identities=22%  Similarity=0.386  Sum_probs=99.1

Q ss_pred             CceEEEEEccccccC-----CCeeecccE-EeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCC-CCCCCe-EEEEEEE
Q 021593          174 SIKHVWRIENFSKLR-----SECCDSQVF-SSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTT-LTPGSK-IYAEFTL  245 (310)
Q Consensus       174 ~~~~~w~i~~fs~~~-----~~~~~S~~f-~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~-~~~~w~-~~~~~~~  245 (310)
                      +..|+|+|.+||.++     ++.+.|+.| .++||+|+|++||+|+.. .++|+||||++++.+. ...+|+ +.++++|
T Consensus         1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~   79 (167)
T cd03771           1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATM   79 (167)
T ss_pred             CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEE
Confidence            357999999999985     348999998 899999999999999987 7789999999987543 346799 5899999


Q ss_pred             EEEcCCCC----cceec----cc--------eeecCC-----------------CCCCCChhcccCccccCCCCCCeeeC
Q 021593          246 RLLDQAQA----RHIAG----KA--------DFWFSA-----------------SNPESGWARYVSFTYFNKPGNGCLVK  292 (310)
Q Consensus       246 ~l~~~~~~----~~~~~----~~--------~~~f~~-----------------~~~~~G~~~fi~~~~L~~~~~~~l~d  292 (310)
                      +|+||...    .++..    ..        ...|++                 ++.+|||++||++++|+.  .+||+|
T Consensus        80 ~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~  157 (167)
T cd03771          80 TLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKG  157 (167)
T ss_pred             EEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcC
Confidence            99999731    12111    00        011221                 345899999999999997  679999


Q ss_pred             CEEEEEEEEE
Q 021593          293 DVCLVEAEVT  302 (310)
Q Consensus       293 D~l~i~~~v~  302 (310)
                      |+|+|+++++
T Consensus       158 dtl~i~~~~~  167 (167)
T cd03771         158 DDLIILLDFE  167 (167)
T ss_pred             CEEEEEEEeC
Confidence            9999999874

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.88  E-value=8.8e-22  Score=151.97  Aligned_cols=124  Identities=31%  Similarity=0.564  Sum_probs=103.9

Q ss_pred             eEEEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCCcc
Q 021593          176 KHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARH  255 (310)
Q Consensus       176 ~~~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~  255 (310)
                      .|+|+|.+|+...++.++|+.|.++|+.|+|.+||+|... ..+++|+||+|.........|++.++|+|+|++++++++
T Consensus         2 ~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   80 (126)
T cd00121           2 KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKS   80 (126)
T ss_pred             EEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCcc
Confidence            6899999999855789999999999999999999999865 467999999998765444679999999999999986555


Q ss_pred             eeccceeecC-CCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEE
Q 021593          256 IAGKADFWFS-ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT  302 (310)
Q Consensus       256 ~~~~~~~~f~-~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~  302 (310)
                      ........|. ....+|||.+||++++|++  ..+++||+|+|+|+|.
T Consensus        81 ~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~  126 (126)
T cd00121          81 LSKSFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK  126 (126)
T ss_pred             ceEeccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence            5444455553 4568899999999999997  3449999999999984

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.88  E-value=2e-21  Score=149.93  Aligned_cols=125  Identities=34%  Similarity=0.556  Sum_probs=101.6

Q ss_pred             ceEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEEEEEEeC
Q 021593           18 THYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQ   97 (310)
Q Consensus        18 ~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l~n~   97 (310)
                      ++|.|+|.+|+...   ++.++|+.|.++|+.|+|.+||+|.. . ..+||||||.|.+.......|.+.++|+|+|+|+
T Consensus         1 ~~~~~~i~~~~~~~---~~~~~S~~f~~~g~~W~l~~~p~~~~-~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~   75 (126)
T cd00121           1 GKHTWKIVNFSELE---GESIYSPPFEVGGYKWRIRIYPNGDG-E-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQ   75 (126)
T ss_pred             CEEEEEECCCCCCC---CcEEECCCEEEcCEeEEEEEEcCCCC-C-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECC
Confidence            47999999999822   68999999999999999999999875 2 5789999999987765456799999999999999


Q ss_pred             CCCceEEeeccccceeecc-CCCccccccceeeccccccCCCCeeecCEEEEEEEEE
Q 021593           98 NKGNFLILQDAMGAERRFH-RLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF  153 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~F~-~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~  153 (310)
                      ++.+.....    ....|. ....+|||.+||++++|.  +..++.||+|+|+|+|.
T Consensus        76 ~~~~~~~~~----~~~~~~~~~~~~~G~~~fi~~~~l~--~~~~~~~d~l~i~~~v~  126 (126)
T cd00121          76 NGGKSLSKS----FTHVFFSEKGSGWGFPKFISWDDLE--DSYYLVDDSLTIEVEVK  126 (126)
T ss_pred             CCCccceEe----ccCCcCCCCCCCCChHHeeEHHHhc--cCCcEECCEEEEEEEEC
Confidence            844433221    233442 456889999999999999  34449999999999983

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.84  E-value=1.3e-20  Score=144.36  Aligned_cols=117  Identities=33%  Similarity=0.582  Sum_probs=96.0

Q ss_pred             EcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCcEEEEEEEEEEEeCCCCce
Q 021593           24 IQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQ-HGWEVYAVFRLFLLDQNKGNF  102 (310)
Q Consensus        24 I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~-~~w~~~~~f~~~l~n~~~~~~  102 (310)
                      |+|||++.+ ++..+.|+.|.++|++|+|.+||+|+     .++|++||+|..+.... .+|++.++++++|+++.++..
T Consensus         1 i~nfs~l~~-~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~   74 (119)
T PF00917_consen    1 IKNFSKLKE-GEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSI   74 (119)
T ss_dssp             ETTGGGHHT-SEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEE
T ss_pred             CcccceEeC-CCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcc
Confidence            789999973 13344558889999999999999975     57999999999885543 589999999999999998874


Q ss_pred             EEeeccccce-eeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEE
Q 021593          103 LILQDAMGAE-RRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV  154 (310)
Q Consensus       103 ~~~~~~~~~~-~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v  154 (310)
                      ...     .. +.|+.. .+|||.+||++++|.+  ..|+.||+++|+|+|+|
T Consensus        75 ~~~-----~~~~~F~~~-~~~g~~~fi~~~~l~~--~~fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   75 SKR-----IKSHSFNNP-SSWGWSSFISWEDLED--PYFLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEE-----EECEEECTT-SEEEEEEEEEHHHHTT--CTTSBTTEEEEEEEEEE
T ss_pred             eee-----eeeeEEeee-cccchhheeEHHHhCc--cCCeECCEEEEEEEEEC
Confidence            332     33 788875 7799999999999994  34899999999999986

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.84  E-value=9.1e-21  Score=145.23  Aligned_cols=116  Identities=35%  Similarity=0.580  Sum_probs=94.6

Q ss_pred             EccccccC-CC-eeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCC-CCCeEEEEEEEEEEcCCCCccee
Q 021593          181 IENFSKLR-SE-CCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYAEFTLRLLDQAQARHIA  257 (310)
Q Consensus       181 i~~fs~~~-~~-~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~~~~~l~~~~~~~~~~  257 (310)
                      |+|||++. ++ ...|+.+.++|++|+|.+||+|+    ++++++||+|....... .+|++.++++++|+++.++....
T Consensus         1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~   76 (119)
T PF00917_consen    1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK   76 (119)
T ss_dssp             ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred             CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence            68999997 33 34458889999999999999987    46999999999875543 57999999999999998876222


Q ss_pred             ccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEE
Q 021593          258 GKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTV  303 (310)
Q Consensus       258 ~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i  303 (310)
                      ....+.|+.. .+|||.+||++++|+++  .|++||+|+|+|+|+|
T Consensus        77 ~~~~~~F~~~-~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   77 RIKSHSFNNP-SSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEECEEECTT-SEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred             eeeeeEEeee-cccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence            2125788764 77999999999999974  3899999999999987

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.80  E-value=2.6e-19  Score=141.15  Aligned_cols=133  Identities=20%  Similarity=0.340  Sum_probs=101.8

Q ss_pred             ceEEEEEccccccccc--ccceEEcCcEEEc-CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEE-EEEEEE
Q 021593           18 THYTVKIQSFSLLLKN--SVEKYESGDFEAG-GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEV-YAVFRL   92 (310)
Q Consensus        18 ~~~~~~I~nfs~~~~~--~~~~~~S~~f~~~-g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~-~~~f~~   92 (310)
                      ..++|+|.||+++.+.  .+..++||+|+.. ||+.+|.+||||.+..+.+.|+|||++++.++.+ -.+|++ .-+++|
T Consensus         2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl   81 (167)
T cd03783           2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII   81 (167)
T ss_pred             CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence            5689999999998752  4678999999884 9999999999998633578899999999998764 468995 569999


Q ss_pred             EEEeCCCCc---eEEe----eccccc------eeeccCC--------------CccccccceeeccccccCCCCeeecCE
Q 021593           93 FLLDQNKGN---FLIL----QDAMGA------ERRFHRL--------------KREWGFDEFIPIKAFNDASNGFLLEDT  145 (310)
Q Consensus        93 ~l~n~~~~~---~~~~----~~~~~~------~~~F~~~--------------~~~~G~~~fi~~~~l~~~~~~yl~dD~  145 (310)
                      +|+||++..   .+..    .+....      ...|++.              ..++||..||++++|.  ..+||+||+
T Consensus        82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~--~r~yikdDt  159 (167)
T cd03783          82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLR--RRSFLKNDD  159 (167)
T ss_pred             EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHh--hCCcccCCe
Confidence            999997521   1110    000000      1124432              3579999999999999  789999999


Q ss_pred             EEEEEEE
Q 021593          146 CVFGAEV  152 (310)
Q Consensus       146 l~i~~~v  152 (310)
                      |.|.+++
T Consensus       160 lfI~~~~  166 (167)
T cd03783         160 LIIFVDF  166 (167)
T ss_pred             EEEEEec
Confidence            9999876

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.80  E-value=3.7e-19  Score=139.42  Aligned_cols=132  Identities=20%  Similarity=0.309  Sum_probs=102.1

Q ss_pred             CceEEEEEccccccccc--ccceEEcCcEEE-cCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEEE-EEEE
Q 021593           17 PTHYTVKIQSFSLLLKN--SVEKYESGDFEA-GGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEVY-AVFR   91 (310)
Q Consensus        17 ~~~~~~~I~nfs~~~~~--~~~~~~S~~f~~-~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~~-~~f~   91 (310)
                      +..++|+|.||+++.+.  .+..++||+|.. .||+.++.+||||.+ .+ ++|||||++++.++.+ -.+|++. -+++
T Consensus         1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g-~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit   78 (167)
T cd03782           1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTD-DY-PGNLAIYLHLTSGPNDDQLQWPCPWQQAT   78 (167)
T ss_pred             CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCC-CC-CCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence            35799999999998763  367899999955 599999999999997 34 6899999999998764 4689999 8999


Q ss_pred             EEEEeCCC---CceEEee--ccc--cc-e--eec--cCC-----------------CccccccceeeccccccCCCCeee
Q 021593           92 LFLLDQNK---GNFLILQ--DAM--GA-E--RRF--HRL-----------------KREWGFDEFIPIKAFNDASNGFLL  142 (310)
Q Consensus        92 ~~l~n~~~---~~~~~~~--~~~--~~-~--~~F--~~~-----------------~~~~G~~~fi~~~~l~~~~~~yl~  142 (310)
                      |+|+||++   ...+...  .+.  .. .  ..|  ++.                 +.++||+.||++++|.  ...||+
T Consensus        79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~--~r~yik  156 (167)
T cd03782          79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLR--SRDFIK  156 (167)
T ss_pred             EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHh--hcCccc
Confidence            99999975   2222211  000  00 1  134  322                 4689999999999999  789999


Q ss_pred             cCEEEEEEEE
Q 021593          143 EDTCVFGAEV  152 (310)
Q Consensus       143 dD~l~i~~~v  152 (310)
                      ||.+.|-+++
T Consensus       157 dD~ifi~~~~  166 (167)
T cd03782         157 GDDVIFLLTM  166 (167)
T ss_pred             CCeEEEEEec
Confidence            9999998775

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.78  E-value=1.4e-18  Score=137.11  Aligned_cols=126  Identities=18%  Similarity=0.347  Sum_probs=98.3

Q ss_pred             ceEEEEEccccccC-----CCeeecccEEe-CCeEEEEEEeeCCCCC-CCCcEEEEEEEecCCCCC-CCCCeE-EEEEEE
Q 021593          175 IKHVWRIENFSKLR-----SECCDSQVFSS-GDQKWQIQLYPKGRRH-GTGTHLAVYLALADSTTL-TPGSKI-YAEFTL  245 (310)
Q Consensus       175 ~~~~w~i~~fs~~~-----~~~~~S~~f~~-~g~~w~i~~yp~g~~~-~~~~~ls~~L~~~~~~~~-~~~w~~-~~~~~~  245 (310)
                      ..++|+|.||+++.     ...++||.|.. .||+++|++||+|++. +++.|+|||+++++++.+ ...|++ .-+++|
T Consensus         2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl   81 (167)
T cd03783           2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII   81 (167)
T ss_pred             CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence            46899999999876     35799999976 5999999999999874 567899999999986544 468995 679999


Q ss_pred             EEEcCCCC----cce----ecc---c------eeecCC--------------CCCCCChhcccCccccCCCCCCeeeCCE
Q 021593          246 RLLDQAQA----RHI----AGK---A------DFWFSA--------------SNPESGWARYVSFTYFNKPGNGCLVKDV  294 (310)
Q Consensus       246 ~l~~~~~~----~~~----~~~---~------~~~f~~--------------~~~~~G~~~fi~~~~L~~~~~~~l~dD~  294 (310)
                      .|+||++.    .++    ...   .      ...|++              ++.++||+.||+++.|+.  .+||+||+
T Consensus        82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdDt  159 (167)
T cd03783          82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKNDD  159 (167)
T ss_pred             EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCCe
Confidence            99999641    122    100   0      112433              245899999999999997  89999999


Q ss_pred             EEEEEEEE
Q 021593          295 CLVEAEVT  302 (310)
Q Consensus       295 l~i~~~v~  302 (310)
                      |.|.++++
T Consensus       160 lfI~~~~~  167 (167)
T cd03783         160 LIIFVDFE  167 (167)
T ss_pred             EEEEEecC
Confidence            99998763

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.77  E-value=2.2e-18  Score=135.12  Aligned_cols=125  Identities=21%  Similarity=0.268  Sum_probs=98.5

Q ss_pred             ceEEEEEccccccC-----CCeeecccEE-eCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeEE-EEEEEE
Q 021593          175 IKHVWRIENFSKLR-----SECCDSQVFS-SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIY-AEFTLR  246 (310)
Q Consensus       175 ~~~~w~i~~fs~~~-----~~~~~S~~f~-~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~-~~~~~~  246 (310)
                      ..++|+|.||+++.     ...++||.|. ..||+++|.+||+|++.+ +.|||||+++++++.+ ...|++. -+++|.
T Consensus         2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~   80 (167)
T cd03782           2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATMM   80 (167)
T ss_pred             CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEEE
Confidence            46899999999976     3578999775 579999999999999875 6799999999986544 4689999 899999


Q ss_pred             EEcCCC----Ccceec--c-------c-eeec--CCC-----------------CCCCChhcccCccccCCCCCCeeeCC
Q 021593          247 LLDQAQ----ARHIAG--K-------A-DFWF--SAS-----------------NPESGWARYVSFTYFNKPGNGCLVKD  293 (310)
Q Consensus       247 l~~~~~----~~~~~~--~-------~-~~~f--~~~-----------------~~~~G~~~fi~~~~L~~~~~~~l~dD  293 (310)
                      |+||++    +.++..  .       . ...|  ++.                 +.++||+.||++++|+.  +.||+||
T Consensus        81 LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikdD  158 (167)
T cd03782          81 LLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKGD  158 (167)
T ss_pred             EEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccCC
Confidence            999964    123211  0       0 1124  222                 57899999999999997  7899999


Q ss_pred             EEEEEEEEE
Q 021593          294 VCLVEAEVT  302 (310)
Q Consensus       294 ~l~i~~~v~  302 (310)
                      +|+|-++++
T Consensus       159 ~ifi~~~~e  167 (167)
T cd03782         159 DVIFLLTME  167 (167)
T ss_pred             eEEEEEecC
Confidence            999987763

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>smart00061 MATH meprin and TRAF homology

Probab=99.74  E-value=2.6e-17  Score=120.71  Aligned_cols=94  Identities=28%  Similarity=0.463  Sum_probs=79.6

Q ss_pred             EEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEEEEEEeCCC
Q 021593           20 YTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNK   99 (310)
Q Consensus        20 ~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l~n~~~   99 (310)
                      ++|+|+||+.+..  ++.++|++|.++|++|+|.+||+       .+|||+||.|.+....+.+|++.|+|+++|+|+++
T Consensus         2 ~~~~~~~~~~~~~--~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~   72 (95)
T smart00061        2 LSHTFKNVSRLEE--GESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNG   72 (95)
T ss_pred             ceeEEEchhhccc--CceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCC
Confidence            5899999999854  68899999999999999999998       37999999998775545589999999999999998


Q ss_pred             CceEEeeccccceeeccCCCcccccccee
Q 021593          100 GNFLILQDAMGAERRFHRLKREWGFDEFI  128 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~F~~~~~~~G~~~fi  128 (310)
                      +....  .   ..+.|.. ..+|||.+||
T Consensus        73 ~~~~~--~---~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       73 KSLSK--K---DKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             CEEee--e---eeEEEcC-CCccceeeEC
Confidence            65532  2   5688887 6789999886

>smart00061 MATH meprin and TRAF homology

Probab=99.71  E-value=9.3e-17  Score=117.73  Aligned_cols=93  Identities=24%  Similarity=0.349  Sum_probs=79.0

Q ss_pred             EEEEEccccccC-CCeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCCcc
Q 021593          177 HVWRIENFSKLR-SECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARH  255 (310)
Q Consensus       177 ~~w~i~~fs~~~-~~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~  255 (310)
                      ++|.|++|+.+. ++.+.|+.|.++|++|+|.+||++      +|+|+||.|.+....+.+|++.++++|+|+||++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~~------~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~   75 (95)
T smart00061        2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRKN------GFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL   75 (95)
T ss_pred             ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEcC------CEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence            579999999985 678999999999999999999983      4999999998765555579999999999999987654


Q ss_pred             eeccceeecCCCCCCCChhccc
Q 021593          256 IAGKADFWFSASNPESGWARYV  277 (310)
Q Consensus       256 ~~~~~~~~f~~~~~~~G~~~fi  277 (310)
                       .....+.|.. ..+|||.+||
T Consensus        76 -~~~~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       76 -SKKDKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             -eeeeeEEEcC-CCccceeeEC
Confidence             3455788886 6789999886

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=8.4e-15  Score=136.76  Aligned_cols=134  Identities=31%  Similarity=0.501  Sum_probs=110.0

Q ss_pred             cCCCceEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC---CCCCcEEEEEE
Q 021593           14 EAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS---LQHGWEVYAVF   90 (310)
Q Consensus        14 ~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~---~~~~w~~~~~f   90 (310)
                      |...-.|+|+|++|+.+.    ++..||+|.+||+.|+|.++|+|+..   .+ +||||.....+.   ....|.|+++|
T Consensus        35 e~~~~sftW~vk~wsel~----~k~~Sp~F~vg~~twki~lfPqG~nq---~~-~sVyLe~~pqe~e~~~gk~~~ccaqF  106 (1089)
T COG5077          35 ELLEMSFTWKVKRWSELA----KKVESPPFSVGGHTWKIILFPQGNNQ---CN-VSVYLEYEPQELEETGGKYYDCCAQF  106 (1089)
T ss_pred             HHhhcccceecCChhhhh----hhccCCcccccCeeEEEEEecccCCc---cc-cEEEEEeccchhhhhcCcchhhhhhe
Confidence            455678999999999995    47889999999999999999999852   22 899999887532   12359999999


Q ss_pred             EEEEEeCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCC---eeecCEEEEEEEEEEeeec
Q 021593           91 RLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNG---FLLEDTCVFGAEVFVSKER  158 (310)
Q Consensus        91 ~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~---yl~dD~l~i~~~v~v~~~~  158 (310)
                      .|.|-|...+.......   .-++|+....+||+.+|+.+..|..|..|   |+.+|++.|++.|+|++.+
T Consensus       107 af~Is~p~~pti~~iN~---sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdP  174 (1089)
T COG5077         107 AFDISNPKYPTIEYINK---SHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDP  174 (1089)
T ss_pred             eeecCCCCCCchhhhhc---ccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCC
Confidence            99999887644332211   45899999999999999999999876554   8999999999999999985

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=2.3e-13  Score=127.29  Aligned_cols=130  Identities=21%  Similarity=0.421  Sum_probs=107.7

Q ss_pred             CCceEEEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCC---CCCCCCeEEEEEEEEEEc
Q 021593          173 PSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADST---TLTPGSKIYAEFTLRLLD  249 (310)
Q Consensus       173 ~~~~~~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~---~~~~~w~~~~~~~~~l~~  249 (310)
                      ....++|+|++++.+.. ...||.|.+||+.|+|.++|+|+..   ..+|+||+....+   .....|.|+++|.|.|-+
T Consensus        37 ~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq---~~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~  112 (1089)
T COG5077          37 LEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQ---CNVSVYLEYEPQELEETGGKYYDCCAQFAFDISN  112 (1089)
T ss_pred             hhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCc---cccEEEEEeccchhhhhcCcchhhhhheeeecCC
Confidence            35679999999999874 7899999999999999999999853   2489999987532   112359999999999998


Q ss_pred             CCCCc-ceeccceeecCCCCCCCChhcccCccccCCCCCC---eeeCCEEEEEEEEEEEee
Q 021593          250 QAQAR-HIAGKADFWFSASNPESGWARYVSFTYFNKPGNG---CLVKDVCLVEAEVTVHGI  306 (310)
Q Consensus       250 ~~~~~-~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~---~l~dD~l~i~~~v~i~~~  306 (310)
                      ...+. ....+..|+|.....+|||.+|+.+..|..|..|   |+.+|++.|.|.|.|+++
T Consensus       113 p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd  173 (1089)
T COG5077         113 PKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD  173 (1089)
T ss_pred             CCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence            87643 3345677899998899999999999999876444   789999999999999986

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.10  E-value=5.9e-11  Score=105.51  Aligned_cols=264  Identities=24%  Similarity=0.322  Sum_probs=174.6

Q ss_pred             EEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEEEEEEeCCC
Q 021593           20 YTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNK   99 (310)
Q Consensus        20 ~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l~n~~~   99 (310)
                      +.|.|.||+...    ..++|..|..+|..|++.+||.|+       +++.|+.+....    +|.+.+.++|.++|+..
T Consensus         6 ~~~~~~~~~~~~----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~   70 (297)
T KOG1987|consen    6 FTWVISNFSSVG----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSP----GWERYAKLRLTVVNQKS   70 (297)
T ss_pred             cceeeccCcchh----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCC----CcceeEEEEEEEccCCC
Confidence            339999999884    788999999999999999999863       789999887653    69999999999999998


Q ss_pred             Cce-EEeeccccceeeccC--CCccccccceeeccccccCCCCeeecCEEEEEEEEEEeeeccCCCCceeec--------
Q 021593          100 GNF-LILQDAMGAERRFHR--LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSM--------  168 (310)
Q Consensus       100 ~~~-~~~~~~~~~~~~F~~--~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~--------  168 (310)
                      ... ...+.   ....|..  ....||+..+++...+.+...||+.++.+.+-+...|.+....  .+....        
T Consensus        71 ~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~--~d~~~~~~~~~~~~  145 (297)
T KOG1987|consen   71 EKYLSTVEE---GFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGK--SDVFKESSKLITLL  145 (297)
T ss_pred             cceeeeeee---eEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeecc--cccchhcccccccc
Confidence            765 43311   2333333  3578999999999999988899999988888888777776632  121110        


Q ss_pred             ccCCCC----ceEEEEEccccccCC----CeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCC--CCCe
Q 021593          169 IKDAPS----IKHVWRIENFSKLRS----ECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT--PGSK  238 (310)
Q Consensus       169 ~~~~~~----~~~~w~i~~fs~~~~----~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~--~~w~  238 (310)
                      ...+..    ..|+|.+.+++....    ....+..|..++..|++.++|.+.......+++.+|.........  ..-.
T Consensus       146 d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~  225 (297)
T KOG1987|consen  146 EEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSAL  225 (297)
T ss_pred             ccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHH
Confidence            112334    779999999988762    256667899999999999999997655555777888765522111  1111


Q ss_pred             EEEEEEEEEEcCCCCc--ce-ecc-ceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEE
Q 021593          239 IYAEFTLRLLDQAQAR--HI-AGK-ADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVH  304 (310)
Q Consensus       239 ~~~~~~~~l~~~~~~~--~~-~~~-~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~  304 (310)
                      +.+......+|+...+  +. .+. ...........+ ..++.++.++.....+++++|++.+++...++
T Consensus       226 ~~~~~~~~~ld~l~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  294 (297)
T KOG1987|consen  226 TYVIAAGFKLDWLEKKLNEVKEKKKKDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEVEAESEPL  294 (297)
T ss_pred             HHHHhccchHhHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhhhcccCCc
Confidence            2333333455554321  11 001 000111111111 44566665555444567778888877776554

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.41  E-value=3.8e-06  Score=74.62  Aligned_cols=118  Identities=29%  Similarity=0.474  Sum_probs=94.4

Q ss_pred             EEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCCcc-e
Q 021593          178 VWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARH-I  256 (310)
Q Consensus       178 ~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~-~  256 (310)
                      .|.+.+++... ..++|..|..++..|++.+||.|+      +++.|+.+....    +|.+.+.+.|.+.|+...+. .
T Consensus         7 ~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~~   75 (297)
T KOG1987|consen    7 TWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYLS   75 (297)
T ss_pred             ceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC----CcceeEEEEEEEccCCCcceee
Confidence            37788887765 678888999999999999999986      789999876532    69999999999999987643 3


Q ss_pred             ec-cceeecCCC--CCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEee
Q 021593          257 AG-KADFWFSAS--NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI  306 (310)
Q Consensus       257 ~~-~~~~~f~~~--~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~  306 (310)
                      .. .....|..+  ...||+..+++...+.+...||++++.+++-+.+.|.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~  128 (297)
T KOG1987|consen   76 TVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEA  128 (297)
T ss_pred             eeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceee
Confidence            22 334444443  468999999999999988889999998888888877654

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=2.7e-06  Score=87.50  Aligned_cols=129  Identities=19%  Similarity=0.188  Sum_probs=104.9

Q ss_pred             eEEEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCCc-
Q 021593          176 KHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQAR-  254 (310)
Q Consensus       176 ~~~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~~-  254 (310)
                      ..+|...+...+.. ...++.|..++.+|++.+.|+++.   ...+++|+.+...+.. ..|++++++.+.++|..+.. 
T Consensus        28 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~~  102 (1093)
T KOG1863|consen   28 STTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDNLP  102 (1093)
T ss_pred             cccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCC-cceEecchhhhccccCCCCch
Confidence            34455555444444 677889999999999999999883   3579999999886655 45999999999999933332 


Q ss_pred             ceeccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEeeecC
Q 021593          255 HIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNA  309 (310)
Q Consensus       255 ~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~t~~  309 (310)
                      ...+...|.|.....+||+..|+.++++.++..+|+.+|++.++++|.|...++.
T Consensus       103 ~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~  157 (1093)
T KOG1863|consen  103 DPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL  157 (1093)
T ss_pred             hhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence            4456778999998899999999999999999999999999999999999876653

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=5.5e-06  Score=85.33  Aligned_cols=131  Identities=21%  Similarity=0.259  Sum_probs=105.5

Q ss_pred             ceEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEEEEEEeC
Q 021593           18 THYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQ   97 (310)
Q Consensus        18 ~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l~n~   97 (310)
                      ...+|.+.+...+.    ....|+.|..++.+|++.+.|+++.    ...+++|+.+...+.. ..|++.+++.+.+.|.
T Consensus        27 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~   97 (1093)
T KOG1863|consen   27 QSTTIDGIDDKSLL----YRALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNT   97 (1093)
T ss_pred             ccccccCcCcchhh----hHhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCC-cceEecchhhhccccC
Confidence            44446655555443    3677899999999999999999874    5779999999988765 4599999999999994


Q ss_pred             CCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEeeeccC
Q 021593           98 NKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERST  160 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~~~~  160 (310)
                      .+........   ..|.|.....+||+..|+.++++.++..+|+.+|++.+++.|++..++..
T Consensus        98 ~~~~~~~~~~---~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~  157 (1093)
T KOG1863|consen   98 IDNLPDPEKA---IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL  157 (1093)
T ss_pred             CCCchhhhhh---hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence            3333332222   67899998899999999999999999999999999999999999877654

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.27  E-value=0.00019  Score=66.03  Aligned_cols=81  Identities=22%  Similarity=0.256  Sum_probs=68.7

Q ss_pred             CCceEEEEEcccccccc----cccceEEcCcEEE--cCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEEEE
Q 021593           16 PPTHYTVKIQSFSLLLK----NSVEKYESGDFEA--GGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEVYA   88 (310)
Q Consensus        16 ~~~~~~~~I~nfs~~~~----~~~~~~~S~~f~~--~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~~~   88 (310)
                      ..|.++|+|.+++..+.    .....++|++|..  .||+.+..+|-||.+ .+.+.++|+|+.++.++.+ ...|+..-
T Consensus       278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g-~~~~~~~s~~~~~~~ge~d~~l~wpf~~  356 (391)
T KOG0297|consen  278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDG-TGKGTHLSLYFVVMRGEYDALLPWPFRQ  356 (391)
T ss_pred             cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCC-CCCcceeeeeeeecccCcccccccCCCC
Confidence            46999999999965543    2356799999966  599999999999988 6788999999999998664 35799999


Q ss_pred             EEEEEEEeC
Q 021593           89 VFRLFLLDQ   97 (310)
Q Consensus        89 ~f~~~l~n~   97 (310)
                      +.+++|++|
T Consensus       357 ~v~~~l~dq  365 (391)
T KOG0297|consen  357 KVTLMLLDQ  365 (391)
T ss_pred             ceEEEEecc
Confidence            999999999

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.88  E-value=0.00079  Score=61.94  Aligned_cols=78  Identities=24%  Similarity=0.344  Sum_probs=66.7

Q ss_pred             CCceEEEEEccccccC-------CCeeecccEE--eCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeEEEE
Q 021593          173 PSIKHVWRIENFSKLR-------SECCDSQVFS--SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAE  242 (310)
Q Consensus       173 ~~~~~~w~i~~fs~~~-------~~~~~S~~f~--~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~  242 (310)
                      ..+...|+|.+++..+       ...++|+.|.  -.||+.+..+|-+|++.+.+.++|+|+.++..+.+ ...|++.-+
T Consensus       278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~~  357 (391)
T KOG0297|consen  278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQK  357 (391)
T ss_pred             cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCCc
Confidence            4689999999996554       3578888886  47999999999999999889999999999986544 357999999


Q ss_pred             EEEEEEcC
Q 021593          243 FTLRLLDQ  250 (310)
Q Consensus       243 ~~~~l~~~  250 (310)
                      +++.+++|
T Consensus       358 v~~~l~dq  365 (391)
T KOG0297|consen  358 VTLMLLDQ  365 (391)
T ss_pred             eEEEEecc
Confidence            99999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	3e-30
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	1e-25
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	2e-25
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	2e-25
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	7e-20
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	1e-11
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	3e-17
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	2e-14
1d00_A	168	Tumor necrosis factor receptor associated protein	4e-17
1d00_A	168	Tumor necrosis factor receptor associated protein	3e-15
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	5e-17
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	7e-14
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	3e-16
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	6e-16
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	3e-13
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	6e-13
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	3e-13
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	6e-13

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score =  111 bits (278), Expect = 3e-30
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 10/149 (6%)

Query: 13  SEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYL 72
           S      +   ++ FS L     E   S         WK+++ P     +  ++ +  +L
Sbjct: 14  SWRSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFL 69

Query: 73  AMENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKA 132
              N  S    W  +A   L +++         +        F   + +WGF  F+    
Sbjct: 70  QC-NAESDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSE 125

Query: 133 FNDASNGFLLEDTCVFGAEVFVSKERSTG 161
             D   GF+ +D   F   V        G
Sbjct: 126 VTDPEKGFIDDDKVTFEVFVQADAP--HG 152

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score = 99.1 bits (247), Expect = 1e-25
 Identities = 22/136 (16%), Positives = 54/136 (39%), Gaps = 7/136 (5%)

Query: 176 KHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGT-HLAVYLALADSTTLT 234
              + +E FS+L SE   S      +  W+I + P+          +  +L   ++ + +
Sbjct: 20  TFQFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQC-NAESDS 77

Query: 235 PGSKIYAEFTLRLLDQA-QARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKD 293
                +A+  L++++     +  + +    F     + G++ +++++    P  G +  D
Sbjct: 78  TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 137

Query: 294 VCLVEAEVTV---HGI 306
               E  V     HG+
Sbjct: 138 KVTFEVFVQADAPHGV 153

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 98.5 bits (245), Expect = 2e-25
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 11/142 (7%)

Query: 19  HYTVKIQSFSLLLKNSVEKYESGDFEAGG---YKWKLVLYPAGNKSKNVKEHISVYLAME 75
            Y   I +FS   +   E  +S  F +G     KW L + P G   ++ K+++S+YL + 
Sbjct: 12  SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLSLYLLLV 70

Query: 76  NTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFND 135
           +        EV A F+  +L+        ++             ++WGF +FI      D
Sbjct: 71  SC----PKSEVRAKFKFSILNAKGEETKAMESQR---AYRFVQGKDWGFKKFIRRDFLLD 123

Query: 136 ASNGFLLEDTCVFGAEVFVSKE 157
            +NG L +D      EV V ++
Sbjct: 124 EANGLLPDDKLTLFCEVSVVQD 145

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 98.5 bits (245), Expect = 2e-25
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 11/135 (8%)

Query: 176 KHVWRIENFSKLRS---ECCDSQVFSSG---DQKWQIQLYPKGRRHGTGTHLAVYLALAD 229
            ++W I NFS  R    E   S  FSSG     KW +++ PKG    +  +L++YL L  
Sbjct: 12  SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS 71

Query: 230 STTLTPGSKIYAEFTLRLLDQAQAR-HIAGKADFWFSASNPESGWARYVSFTYFNKPGNG 288
                P S++ A+F   +L+              +      + G+ +++   +     NG
Sbjct: 72  C----PKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANG 127

Query: 289 CLVKDVCLVEAEVTV 303
            L  D   +  EV+V
Sbjct: 128 LLPDDKLTLFCEVSV 142

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 83.8 bits (207), Expect = 7e-20
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 18/155 (11%)

Query: 19  HYTVKIQSFSLLLKNSVEKYE----SGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYL 72
            Y  KI +F + LK   E+      S  F  G  GYK  + L+     ++    +IS+++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 73  A-MENTSSLQHGWEVYAVFRLFLLDQN----KGNFLILQDAMGAERRFHRLKRE-----W 122
             M+        W      RL +LDQ+    + N   + DA      F R         +
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 123 GFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE 157
           G+  F+ ++A       F+ +DT +   EV    +
Sbjct: 126 GYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD 158

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 24/155 (15%), Positives = 45/155 (29%), Gaps = 28/155 (18%)

Query: 176 KHVWRIENFSKLRSE-------CCDSQVFSSGDQ--KWQIQLYPKGRRHG-TGTHLAVYL 225
            ++W+I NF                S  F +G    K  ++L+ +         ++++++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 226 ALADSTT-LTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARYVSFTYFNK 284
                               L +LDQ++A       +    A      + R       N 
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEI-MDAKPELLAFQRPTIPR--NP 122

Query: 285 PGNGC--------------LVKDVCLVEAEVTVHG 305
            G G               +  D  LV  EV+   
Sbjct: 123 KGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRF 157

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 79.6 bits (196), Expect = 3e-17
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 11/139 (7%)

Query: 176 KHVWRIENFSKLRS---ECCDSQVFSSG---DQKWQIQLYPKGRRHGTGTHLAVYLALAD 229
            ++W I NFS  R    E   S  FSSG     KW +++ PKG    +  +L++YL L  
Sbjct: 8   SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS 67

Query: 230 STTLTPGSKIYAEFTLRLLDQA-QARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNG 288
                P S++ A+F   +L+   +          +      + G+ +++   +     NG
Sbjct: 68  ----CPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANG 123

Query: 289 CLVKDVCLVEAEVTVHGIS 307
            L  D   +  EV+V   S
Sbjct: 124 LLPDDKLTLFCEVSVVQDS 142

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 19/191 (9%)

Query: 19  HYTVKIQSFSLLLKNSVEKYESGDFEAGG---YKWKLVLYPAGNKSKNVKEHISVYLAME 75
            Y   I +FS   +   E  +S  F +G     KW L + P G   ++ K+++S+YL + 
Sbjct: 8   SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLSLYLLLV 66

Query: 76  NTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFND 135
           +        EV A F+  +L+        ++       RF +  ++WGF +FI      D
Sbjct: 67  SCPK----SEVRAKFKFSILNAKGEETKAMES--QRAYRFVQ-GKDWGFKKFIRRGFLLD 119

Query: 136 ASNGFLLEDTCVFGAEVFVSKERSTGKGEC-LSMIKDAPSIKHVWRIENFSKLRS--ECC 192
            +NG L +D      EV V ++     G+  ++M+K           +    L       
Sbjct: 120 EANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLA----DELGGLWENSRFT 175

Query: 193 DSQVFSSGDQK 203
           D        Q+
Sbjct: 176 DC-CLCVAGQE 185

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 76.6 bits (188), Expect = 4e-17
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 176 KHVWRIENFSKLRSE-------CCDSQVFSSGDQ--KWQIQLYPKGRRHGTGTHLAVYLA 226
             +W+I +F++ R E          S  F +     K  +++Y  G   G GTHL+++  
Sbjct: 20  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 79

Query: 227 LADSTT-LTPGSKIYAEFTLRLLDQAQARHIAGKADFW---------FSASNPESGWARY 276
           +               + TL LLDQ    H+                 +  N  SG   +
Sbjct: 80  VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 139

Query: 277 VSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 306
              +   +  N  +  D   ++A V + G+
Sbjct: 140 CPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 168

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 71.2 bits (174), Expect = 3e-15
 Identities = 33/152 (21%), Positives = 56/152 (36%), Gaps = 18/152 (11%)

Query: 19  HYTVKIQSFSLLLKNSVEK----YESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYL 72
            +  KI  F+   + +V        S  F     GYK  L +Y  G+       H+S++ 
Sbjct: 20  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGD-GTGRGTHLSLFF 78

Query: 73  AM---ENTSSLQHGWEVYAVFRLFLLDQN-KGNFLILQDAMGAERRFHRLKRE----WGF 124
            +    N + L+  W       L LLDQN + + +           F R   +     G 
Sbjct: 79  VVMKGPNDALLR--WPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGC 136

Query: 125 DEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK 156
             F P+    +A N ++ +D     A V ++ 
Sbjct: 137 PLFCPVSKM-EAKNSYVRDDAIFIKAIVDLTG 167

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 80.4 bits (198), Expect = 5e-17
 Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 8/144 (5%)

Query: 15  APPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAM 74
                +   ++ FS L +       S         WK+++ P     +  ++ +  +L  
Sbjct: 28  RSEATFQFTVERFSRLSE----SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFL-Q 82

Query: 75  ENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFN 134
            N  S    W  +A   L +++         +        F   + +WGF  F+      
Sbjct: 83  CNAESDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVT 139

Query: 135 DASNGFLLEDTCVFGAEVFVSKER 158
           D   GF+ +D   F   V      
Sbjct: 140 DPEKGFIDDDKVTFEVFVQADAPH 163

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 70.8 bits (173), Expect = 7e-14
 Identities = 18/131 (13%), Positives = 49/131 (37%), Gaps = 4/131 (3%)

Query: 176 KHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGT-HLAVYLALADSTTLT 234
              + +E FS+L      S      +  W+I + P+          +  +L   ++ + +
Sbjct: 32  TFQFTVERFSRLSESVL-SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQ-CNAESDS 89

Query: 235 PGSKIYAEFTLRLLDQA-QARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKD 293
                +A+  L++++     +  + +    F     + G++ +++++    P  G +  D
Sbjct: 90  TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 149

Query: 294 VCLVEAEVTVH 304
               E  V   
Sbjct: 150 KVTFEVFVQAD 160

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 74.7 bits (183), Expect = 3e-16
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 20/150 (13%)

Query: 176 KHVWRIENFSKLRSE-------CCDSQVFSSGDQ--KWQIQLYPKGRRHGTGTHLAVYLA 226
             +W+I +F++ R E          S  F +     K  +++Y  G   G GTHL+++  
Sbjct: 44  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 103

Query: 227 LADSTT-LTPGSKIYAEFTLRLLDQAQARHIAGKADFW---------FSASNPESGWARY 276
           +               + TL LLDQ    H+                 +  N  SG   +
Sbjct: 104 VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 163

Query: 277 VSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 306
              +      N  +  D   ++A V + G+
Sbjct: 164 CPVSKMEAK-NSYVRDDAIFIKAIVDLTGL 192

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 73.9 bits (181), Expect = 6e-16
 Identities = 33/152 (21%), Positives = 56/152 (36%), Gaps = 18/152 (11%)

Query: 19  HYTVKIQSFSLLLKNSVEKYE----SGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYL 72
            +  KI  F+   + +V        S  F     GYK  L +Y  G+       H+S++ 
Sbjct: 44  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGD-GTGRGTHLSLFF 102

Query: 73  AM---ENTSSLQHGWEVYAVFRLFLLDQ-NKGNFLILQDAMGAERRFHRLKRE----WGF 124
            +    N + L+  W       L LLDQ N+ + +           F R   +     G 
Sbjct: 103 VVMKGPNDALLR--WPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGC 160

Query: 125 DEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK 156
             F P+    +A N ++ +D     A V ++ 
Sbjct: 161 PLFCPVSKM-EAKNSYVRDDAIFIKAIVDLTG 191

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 67.0 bits (163), Expect = 3e-13
 Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 28/155 (18%)

Query: 176 KHVWRIENFSKLRSE-------CCDSQVFSSGDQ--KWQIQLYPKGRRHGTGTHLAVYLA 226
             +W+I ++ + + E          SQ F +G    K   ++Y  G   G GTHL+++  
Sbjct: 77  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 136

Query: 227 LA----DSTTLTPGSKIYAEFTLRLLDQAQARH--------IAGKADFW--FSASNPESG 272
           +     D+    P      + TL L+DQ  +R             + F       N  SG
Sbjct: 137 IMRGEYDALLPWP---FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 193

Query: 273 WARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGIS 307
              +V+ T         +  D   ++  V    + 
Sbjct: 194 CPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 226

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 65.9 bits (160), Expect = 6e-13
 Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 20/153 (13%)

Query: 19  HYTVKIQSFSLLLKNSVE----KYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYL 72
               KI+ +    + +V        S  F  G  GYK    +Y  G+       H+S++ 
Sbjct: 77  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGD-GMGKGTHLSLFF 135

Query: 73  AM---ENTSSLQHGWEVYAVFRLFLLDQNKGNFLILQ------DAMGAERRFHRLKREWG 123
            +   E  + L   W       L L+DQ      +        ++   ++    +    G
Sbjct: 136 VIMRGEYDALLP--WPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 193

Query: 124 FDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK 156
              F+        +  ++ +DT      V  S 
Sbjct: 194 CPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD 224

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 66.2 bits (161), Expect = 3e-13
 Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 28/155 (18%)

Query: 176 KHVWRIENFSKLRSE-------CCDSQVFSSGDQ--KWQIQLYPKGRRHGTGTHLAVYLA 226
             +W+I ++ + + E          SQ F +G    K   ++Y  G   G GTHL+++  
Sbjct: 41  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 100

Query: 227 LA----DSTTLTPGSKIYAEFTLRLLDQAQARH--------IAGKADFW--FSASNPESG 272
           +     D+    P      + TL L+DQ  +R             + F       N  SG
Sbjct: 101 IMRGEYDALLPWP---FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 157

Query: 273 WARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGIS 307
              +V+ T         +  D   ++  V    + 
Sbjct: 158 CPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 190

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 65.4 bits (159), Expect = 6e-13
 Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 20/153 (13%)

Query: 19  HYTVKIQSFSLLLKNSVEK----YESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYL 72
               KI+ +    + +V        S  F  G  GYK    +Y  G+       H+S++ 
Sbjct: 41  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGD-GMGKGTHLSLFF 99

Query: 73  AM---ENTSSLQHGWEVYAVFRLFLLDQ--NKGNFLILQDAMGAERRFHRLKRE----WG 123
            +   E  + L   W       L L+DQ  ++ +             F +   E     G
Sbjct: 100 VIMRGEYDALLP--WPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 157

Query: 124 FDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK 156
              F+        +  ++ +DT      V  S 
Sbjct: 158 CPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.97
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.97
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.96
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.95
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.95
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.94
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.94
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.94
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.94
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.94
1d00_A	168	Tumor necrosis factor receptor associated protein	99.94
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.93
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.93
1d00_A	168	Tumor necrosis factor receptor associated protein	99.93
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.93
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.93
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.92
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.92
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.91
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.9
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.9
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.89
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.51
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.44

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.97  E-value=6e-31  Score=208.02  Aligned_cols=140  Identities=26%  Similarity=0.431  Sum_probs=119.1

Q ss_pred             cccccCCCceEEEEEcccccccccccceEEcCcEEEcCe---eEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEE
Q 021593           10 RSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGY---KWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEV   86 (310)
Q Consensus        10 ~~~~~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~---~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~   86 (310)
                      .++.++..++|+|+|+|||.+++..++.++|++|.+|||   +|+|.+||+|+. .+..+||||||.|.+.    ..|++
T Consensus         3 ~~m~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~----~~w~v   77 (145)
T 3ivv_A            3 GGSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSC----PKSEV   77 (145)
T ss_dssp             --CCCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSS-GGGTTEEEEEEEEEEC----SSSEE
T ss_pred             CCCCcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCC-CCCCCeEEEEEEEcCC----CCCcE
Confidence            578889999999999999998754468999999999996   999999999986 3567899999999875    35999


Q ss_pred             EEEEEEEEEeCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEeee
Q 021593           87 YAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE  157 (310)
Q Consensus        87 ~~~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~  157 (310)
                      .|+|+|+|+||+++........  ..+.|.. ..+|||.+||++++|+++.++||+||+|+|+|+|+|+++
T Consensus        78 ~a~f~l~llnq~~~~~~~~~~~--~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d  145 (145)
T 3ivv_A           78 RAKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  145 (145)
T ss_dssp             EEEEEEEEECTTSCEEEEEECS--SCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred             EEEEEEEEEecCCCceeeeccc--ceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence            9999999999998876543332  5678875 578999999999999876899999999999999999863

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.97  E-value=4e-30  Score=205.58  Aligned_cols=137  Identities=14%  Similarity=0.245  Sum_probs=117.0

Q ss_pred             CCCceEEEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCC-CCCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEcC
Q 021593          172 APSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRH-GTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQ  250 (310)
Q Consensus       172 ~~~~~~~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~-~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~  250 (310)
                      .+.+.|+|+|+|||.++ +.++|+.|.++|++|+|++||+|+.. +.++||||||+|... ..+..|++.|+|+|+|+||
T Consensus        16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~   93 (155)
T 2foj_A           16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY   93 (155)
T ss_dssp             CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCS
T ss_pred             CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcC
Confidence            45689999999999995 78999999999999999999999765 356899999999654 4456799999999999999


Q ss_pred             CCCc-ceeccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEeeecCC
Q 021593          251 AQAR-HIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL  310 (310)
Q Consensus       251 ~~~~-~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~t~~~  310 (310)
                      +++. +..+...+.|.....+|||.+||++++|++++++||+||+|+|+|+|+|.++++.+
T Consensus        94 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~  154 (155)
T 2foj_A           94 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA  154 (155)
T ss_dssp             SCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred             CCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence            8765 55566778898767889999999999998777899999999999999999998854

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.96  E-value=2.6e-29  Score=200.90  Aligned_cols=136  Identities=18%  Similarity=0.334  Sum_probs=113.3

Q ss_pred             CCCceEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEEEEE
Q 021593           15 APPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFL   94 (310)
Q Consensus        15 ~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l   94 (310)
                      ...|+|+|+|+|||.++    +.++|++|.+||++|+|.+||+|+...+..+||||||.|... ..+.+|++.|+|+|+|
T Consensus        16 ~~~~~~~w~I~nfS~~~----~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l   90 (155)
T 2foj_A           16 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKI   90 (155)
T ss_dssp             CSEEEEEEEESSGGGCC----SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEE
T ss_pred             CCCcEEEEEECChhhcC----CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEE
Confidence            55799999999999994    689999999999999999999997521357899999999654 3456799999999999


Q ss_pred             EeCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEeeec
Q 021593           95 LDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKER  158 (310)
Q Consensus        95 ~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~~  158 (310)
                      +||+++.....+.   ..+.|.....+|||.+||++++|+++.++||+||+|+|+|+|+|.+++
T Consensus        91 ~~~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t  151 (155)
T 2foj_A           91 INYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH  151 (155)
T ss_dssp             CCSSCGGGCEEEE---EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred             EcCCCCcceEEec---cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence            9998875333333   568888766789999999999999888999999999999999996655

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.95  E-value=9.9e-29  Score=195.23  Aligned_cols=132  Identities=27%  Similarity=0.467  Sum_probs=112.3

Q ss_pred             cCCCCceEEEEEccccccC---CCeeecccEEeCCe---EEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEE
Q 021593          170 KDAPSIKHVWRIENFSKLR---SECCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEF  243 (310)
Q Consensus       170 ~~~~~~~~~w~i~~fs~~~---~~~~~S~~f~~~g~---~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~  243 (310)
                      .....+.|+|+|.|||.++   ++.+.|+.|.++|+   +|+|++||+|+..+..+|||+||+|.+.    +.|++.|+|
T Consensus         6 ~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f   81 (145)
T 3ivv_A            6 GKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKF   81 (145)
T ss_dssp             CCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEE
T ss_pred             CcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEE
Confidence            3456789999999999986   46899999999995   9999999999876667899999999874    369999999


Q ss_pred             EEEEEcCCCCcce--eccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEee
Q 021593          244 TLRLLDQAQARHI--AGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI  306 (310)
Q Consensus       244 ~~~l~~~~~~~~~--~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~  306 (310)
                      +|+|+||.+++..  .....++|.. ..+|||++||++++|++++++||+||+|+|+|+|+|+++
T Consensus        82 ~l~llnq~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d  145 (145)
T 3ivv_A           82 KFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  145 (145)
T ss_dssp             EEEEECTTSCEEEEEECSSCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred             EEEEEecCCCceeeecccceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence            9999999887643  2345678864 678999999999999765689999999999999999864

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.95  E-value=4.2e-28  Score=197.88  Aligned_cols=143  Identities=18%  Similarity=0.275  Sum_probs=114.6

Q ss_pred             cCCCceEEEEEcccccccc---cc-cceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCcEE
Q 021593           14 EAPPTHYTVKIQSFSLLLK---NS-VEKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS-LQHGWEV   86 (310)
Q Consensus        14 ~~~~~~~~~~I~nfs~~~~---~~-~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~-~~~~w~~   86 (310)
                      .+..|+|+|+|.|||.+++   .+ +..++|++|.+|  ||+|+|.+||+|++ .+.++||||||.|.+++. ....|++
T Consensus        20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~d~~l~W~v   98 (178)
T 4gjh_A           20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWPF   98 (178)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEBCCTTGGGSCSSC
T ss_pred             cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCC-CCCCCEEEEEEEEecCCCCcccCCce
Confidence            4678999999999999975   22 348999999999  99999999999987 456789999999987643 2357999


Q ss_pred             EEEEEEEEEeCCCCceEEeec--cccceeeccC----CCccccccceeeccccccCCCCeeecCEEEEEEEEEEeee
Q 021593           87 YAVFRLFLLDQNKGNFLILQD--AMGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE  157 (310)
Q Consensus        87 ~~~f~~~l~n~~~~~~~~~~~--~~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~  157 (310)
                      .++|+|+|+||+++.......  +....+.|+.    ...+|||.+||++++|+++.++||+||+|+|+|+|.|.+.
T Consensus        99 ~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~  175 (178)
T 4gjh_A           99 RQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL  175 (178)
T ss_dssp             CCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred             EEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence            999999999998765433211  0002357763    3468999999999999977799999999999999977543

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.94  E-value=5.6e-28  Score=199.74  Aligned_cols=142  Identities=16%  Similarity=0.188  Sum_probs=113.6

Q ss_pred             cCCCceEEEEEcccccccc---c-ccceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEE
Q 021593           14 EAPPTHYTVKIQSFSLLLK---N-SVEKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEV   86 (310)
Q Consensus        14 ~~~~~~~~~~I~nfs~~~~---~-~~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~   86 (310)
                      .+..|+|+|+|.|||.+++   . .++.++|++|.+|  ||+|+|.+||||++ .+.++||||||.+.+++.+ ...|++
T Consensus        36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~-~~~~~~lSlyL~l~~g~~D~~l~wp~  114 (198)
T 4ghu_A           36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF  114 (198)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSC
T ss_pred             cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCC-CCCCCeEEEEEEecCCccCCCCCceE
Confidence            3567999999999999975   2 2578999999999  99999999999987 4567899999999976542 347999


Q ss_pred             EEEEEEEEEeCCCCceEEeec----c--ccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEeeec
Q 021593           87 YAVFRLFLLDQNKGNFLILQD----A--MGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKER  158 (310)
Q Consensus        87 ~~~f~~~l~n~~~~~~~~~~~----~--~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~~  158 (310)
                      .++|+|+|+||.+........    .  ....+.|.....+|||.+||++++|+  ++|||+||+|+|+|+|.|+..+
T Consensus       115 ~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~  190 (198)
T 4ghu_A          115 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLP  190 (198)
T ss_dssp             CCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTCC
T ss_pred             EEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccCC
Confidence            999999999998764433211    0  00112233345689999999999999  6899999999999999998766

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.94  E-value=8.2e-28  Score=196.16  Aligned_cols=136  Identities=24%  Similarity=0.350  Sum_probs=112.8

Q ss_pred             CCCCceEEEEEccccccCC-------CeeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCCC-CCCCCeEE
Q 021593          171 DAPSIKHVWRIENFSKLRS-------ECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTT-LTPGSKIY  240 (310)
Q Consensus       171 ~~~~~~~~w~i~~fs~~~~-------~~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~-~~~~w~~~  240 (310)
                      ....+.|+|+|.|||.+++       ..+.|+.|.++  |++|+|.+||+|++.+.++|||+||+|.+... ....|++.
T Consensus        20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~   99 (178)
T 4gjh_A           20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR   99 (178)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCC
T ss_pred             cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceE
Confidence            4567999999999998863       27999999999  99999999999987766789999999977543 23579999


Q ss_pred             EEEEEEEEcCCCCc-ceecc-----ceeecCC----CCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEee
Q 021593          241 AEFTLRLLDQAQAR-HIAGK-----ADFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI  306 (310)
Q Consensus       241 ~~~~~~l~~~~~~~-~~~~~-----~~~~f~~----~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~  306 (310)
                      ++|+|+|+||.++. +....     ..+.|+.    .+.+|||.+||++++|+++.++||+||+|+|+|+|+|.+.
T Consensus       100 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~  175 (178)
T 4gjh_A          100 QRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL  175 (178)
T ss_dssp             CEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred             EEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence            99999999998754 33221     3467763    3568999999999999987789999999999999987654

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.94  E-value=4.2e-27  Score=209.30  Aligned_cols=180  Identities=24%  Similarity=0.374  Sum_probs=132.0

Q ss_pred             cCCCceEEEEEcccccccccccceEEcCcEEEcCe---eEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEE
Q 021593           14 EAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGY---KWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVF   90 (310)
Q Consensus        14 ~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~---~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f   90 (310)
                      ++..|+|+|+|.|||.++...++.++|++|.+||+   +|+|.+||||.+ .++++|||+||.|.+..    .|++.++|
T Consensus         3 ~~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~-~~~~~~lslyL~~~~~~----~~~v~a~~   77 (312)
T 3hqi_A            3 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKF   77 (312)
T ss_dssp             EEEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECC----C-CEEEEE
T ss_pred             ceEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCC-ccCCCcEEEEEEEcCCC----CCcEEEEE
Confidence            45679999999999999744478999999999995   999999999986 45789999999998653    58999999


Q ss_pred             EEEEEeCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEeeeccCCCC-ceeecc
Q 021593           91 RLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKG-ECLSMI  169 (310)
Q Consensus        91 ~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~-~~~~~~  169 (310)
                      +|+|+||+++.....+..  ..+.|... .+|||.+||++++|+++.+|||+||+++|+|+|+|++......+ +....+
T Consensus        78 ~~~l~~~~~~~~~~~~~~--~~~~F~~~-~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~~  154 (312)
T 3hqi_A           78 KFSILNAKGEETKAMESQ--RAYRFVQG-KDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMV  154 (312)
T ss_dssp             EEEEECTTSCEEEEEECS--SCEEECTT-CEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSSC
T ss_pred             EEEEEeCCCCcccccccC--CceeCCCC-CCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEecccccccccccccc
Confidence            999999998776554322  56788864 58999999999999877789999999999999999976421111 112233


Q ss_pred             cCCCCceEEEEEccccccC-CCeeecccEEeCCeEEE
Q 021593          170 KDAPSIKHVWRIENFSKLR-SECCDSQVFSSGDQKWQ  205 (310)
Q Consensus       170 ~~~~~~~~~w~i~~fs~~~-~~~~~S~~f~~~g~~w~  205 (310)
                      ..|+...    ..++..+. .....+..+.++|..++
T Consensus       155 ~~p~~~l----~~~l~~l~~~~~~~Dv~l~v~~~~f~  187 (312)
T 3hqi_A          155 KVPECRL----ADELGGLWENSRFTDCCLCVAGQEFQ  187 (312)
T ss_dssp             CCCCCCH----HHHHHHHHHTTCSCCEEEEETTEEEE
T ss_pred             CCCCchH----HHHHHHHHhCCCCCceEEEECCEEEe
Confidence            3444332    24455544 33344457778876543

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.94  E-value=4.3e-27  Score=188.90  Aligned_cols=141  Identities=23%  Similarity=0.297  Sum_probs=107.2

Q ss_pred             CCCceEEEEEcccccccc-c-ccc--eEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEEE
Q 021593           15 APPTHYTVKIQSFSLLLK-N-SVE--KYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEVY   87 (310)
Q Consensus        15 ~~~~~~~~~I~nfs~~~~-~-~~~--~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~~   87 (310)
                      ...|+|+|+|+|||.+++ . .++  .++|++|.+|  ||+|+|.+||||++....++||||||.+++++.. ..+|++.
T Consensus         2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~   81 (160)
T 1lb6_A            2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (160)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence            457999999999999975 2 355  8999999999  9999999999997622247899999999876542 3569999


Q ss_pred             EEEEEEEEeCCCCceE--Eeec--cccceeeccC-----CCccccccceeeccccccCCCCeeecCEEEEEEEEEEeee
Q 021593           88 AVFRLFLLDQNKGNFL--ILQD--AMGAERRFHR-----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE  157 (310)
Q Consensus        88 ~~f~~~l~n~~~~~~~--~~~~--~~~~~~~F~~-----~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~  157 (310)
                      ++|+|+|+||.+....  ....  .......|..     ...+|||.+||++++|+  .++||+||+|+|+|+|.|+.+
T Consensus        82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~  158 (160)
T 1lb6_A           82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD  158 (160)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC---
T ss_pred             eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeec
Confidence            9999999999875211  0000  0001234543     12379999999999999  689999999999999999864

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.94  E-value=5.2e-27  Score=193.89  Aligned_cols=140  Identities=21%  Similarity=0.282  Sum_probs=111.2

Q ss_pred             CCCceEEEEEcccccccc-c-ccc--eEEcCcEEE--cCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCcEEE
Q 021593           15 APPTHYTVKIQSFSLLLK-N-SVE--KYESGDFEA--GGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQ-HGWEVY   87 (310)
Q Consensus        15 ~~~~~~~~~I~nfs~~~~-~-~~~--~~~S~~f~~--~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~-~~w~~~   87 (310)
                      ...|+|+|+|.|||.+++ . .++  .++|++|.+  |||+|+|.+||+|++ .+.++||||||.+.+++..+ .+|++.
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~W~~~  118 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN  118 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCCCCcCCCceE
Confidence            578999999999999975 2 244  699999999  999999999999986 45678999999998875443 689999


Q ss_pred             EEEEEEEEeCCCCceEEeecc-ccceeeccC----CCccccccceeeccccccCCCCeeecCEEEEEEEEEEee
Q 021593           88 AVFRLFLLDQNKGNFLILQDA-MGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK  156 (310)
Q Consensus        88 ~~f~~~l~n~~~~~~~~~~~~-~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~  156 (310)
                      ++|+|+|+||+++........ ......|..    ...+|||.+||++++|++ .++||+||+|+|+|+|+|.+
T Consensus       119 a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~  191 (192)
T 1ca9_A          119 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG  191 (192)
T ss_dssp             CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence            999999999998744321100 001234642    346899999999999986 57999999999999998753

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.94  E-value=8.9e-27  Score=188.63  Aligned_cols=139  Identities=22%  Similarity=0.287  Sum_probs=109.3

Q ss_pred             CCCceEEEEEccccccccc--ccc--eEEcCcEE--EcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCcEEE
Q 021593           15 APPTHYTVKIQSFSLLLKN--SVE--KYESGDFE--AGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQ-HGWEVY   87 (310)
Q Consensus        15 ~~~~~~~~~I~nfs~~~~~--~~~--~~~S~~f~--~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~-~~w~~~   87 (310)
                      ...|+|+|+|+|||.+++.  .++  .++|++|.  +|||+|+|.+||||++ .+.++||||||.|.+++..+ .+|++.
T Consensus        16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~w~~~   94 (168)
T 1d00_A           16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN   94 (168)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCC-CCCCcEEEEEEEEecCCCCccCCCceE
Confidence            4689999999999999752  344  49999996  7899999999999986 45679999999998865433 689999


Q ss_pred             EEEEEEEEeCCCCceEEeec-cccceeeccC----CCccccccceeeccccccCCCCeeecCEEEEEEEEEEe
Q 021593           88 AVFRLFLLDQNKGNFLILQD-AMGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVS  155 (310)
Q Consensus        88 ~~f~~~l~n~~~~~~~~~~~-~~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~  155 (310)
                      ++|+|+|+||++........ .......|..    ...+|||.+||++++|+++ ++||+||+|+|+|+|+|.
T Consensus        95 ~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~  166 (168)
T 1d00_A           95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT  166 (168)
T ss_dssp             CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred             EEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence            99999999999865332210 0001235653    3467999999999999943 399999999999999774

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.93  E-value=4.1e-27  Score=194.20  Aligned_cols=138  Identities=17%  Similarity=0.204  Sum_probs=110.6

Q ss_pred             CCceEEEEEcccccccc-c-ccc--eEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEEEE
Q 021593           16 PPTHYTVKIQSFSLLLK-N-SVE--KYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEVYA   88 (310)
Q Consensus        16 ~~~~~~~~I~nfs~~~~-~-~~~--~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~~~   88 (310)
                      ..|+|+|+|.|||.+++ . .++  .++|++|.+|  ||+|+|.+||||++ .+.++|||+||.+++++.+ ...|++.+
T Consensus        38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~wp~~a  116 (192)
T 2gkw_A           38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFKQ  116 (192)
T ss_dssp             CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEecCCCCccCCCcEEE
Confidence            67999999999999974 2 244  5999999999  99999999999986 4568999999999876543 35799999


Q ss_pred             EEEEEEEeCCCCceEEeecc--ccceeeccCC----CccccccceeeccccccCCCCeeecCEEEEEEEEEEee
Q 021593           89 VFRLFLLDQNKGNFLILQDA--MGAERRFHRL----KREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK  156 (310)
Q Consensus        89 ~f~~~l~n~~~~~~~~~~~~--~~~~~~F~~~----~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~  156 (310)
                      +|+|+|+||.+.........  ....+.|...    ..+|||.+||++++|+  ++|||+||+|+|+|+|.|.+
T Consensus       117 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~--~~gyl~dD~l~I~~~V~v~~  188 (192)
T 2gkw_A          117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD  188 (192)
T ss_dssp             CEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhC--cCCCeeCCEEEEEEEEEcCC
Confidence            99999999998754332110  0022557542    4679999999999999  57999999999999997754

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.93  E-value=2.7e-27  Score=195.61  Aligned_cols=133  Identities=23%  Similarity=0.354  Sum_probs=109.5

Q ss_pred             CCCceEEEEEccccccCC-----C--eeecccEEe--CCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCC-CCCeEEE
Q 021593          172 APSIKHVWRIENFSKLRS-----E--CCDSQVFSS--GDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYA  241 (310)
Q Consensus       172 ~~~~~~~w~i~~fs~~~~-----~--~~~S~~f~~--~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~  241 (310)
                      +..+.|+|+|.|||.++.     +  .++|+.|.+  +|++|+|.+||+|++.+.++|||+||++.+...++ ..|++.+
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a  119 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ  119 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence            567999999999999862     2  599999999  99999999999998766678999999998765443 5799999


Q ss_pred             EEEEEEEcCCCCcceeccc-----eeecCC----CCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEe
Q 021593          242 EFTLRLLDQAQARHIAGKA-----DFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG  305 (310)
Q Consensus       242 ~~~~~l~~~~~~~~~~~~~-----~~~f~~----~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~  305 (310)
                      +|+|+|+||.++++.....     ...|..    .+.+|||++||++++|++ .+|||+||+|+|+|+|+|.+
T Consensus       120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~  191 (192)
T 1ca9_A          120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG  191 (192)
T ss_dssp             CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence            9999999998875442221     234642    356899999999999984 37999999999999998853

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.93  E-value=8.3e-27  Score=188.79  Aligned_cols=132  Identities=22%  Similarity=0.337  Sum_probs=108.2

Q ss_pred             CCCceEEEEEccccccCC-----C--eeecccEE--eCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCC-CCCeEEE
Q 021593          172 APSIKHVWRIENFSKLRS-----E--CCDSQVFS--SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYA  241 (310)
Q Consensus       172 ~~~~~~~w~i~~fs~~~~-----~--~~~S~~f~--~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~  241 (310)
                      ...+.|+|+|.|||.+++     +  .++|+.|.  ++|++|+|++||+|++.+.++|||+||+|.+...++ .+|++.+
T Consensus        16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~   95 (168)
T 1d00_A           16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ   95 (168)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence            357899999999999862     2  38999996  889999999999998766678999999998765443 5799999


Q ss_pred             EEEEEEEcCCCCcceeccc-----eeecCC----CCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEE
Q 021593          242 EFTLRLLDQAQARHIAGKA-----DFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVH  304 (310)
Q Consensus       242 ~~~~~l~~~~~~~~~~~~~-----~~~f~~----~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~  304 (310)
                      +|+|+|+||.++++.....     .+.|..    .+.+|||.+||++++|+++ +|||+||+|+|+|+|+|.
T Consensus        96 ~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~  166 (168)
T 1d00_A           96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT  166 (168)
T ss_dssp             CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred             EEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence            9999999998865443221     235653    3578999999999999973 399999999999999874

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.93  E-value=7.3e-27  Score=193.03  Aligned_cols=136  Identities=21%  Similarity=0.310  Sum_probs=110.4

Q ss_pred             CCCCceEEEEEccccccCC-------CeeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeEE
Q 021593          171 DAPSIKHVWRIENFSKLRS-------ECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIY  240 (310)
Q Consensus       171 ~~~~~~~~w~i~~fs~~~~-------~~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~  240 (310)
                      ....+.|+|+|.|||.+++       +.++|+.|.++  |++|+|.+||+|++.+.++|||+||.+.+++.+ ...|++.
T Consensus        36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~  115 (198)
T 4ghu_A           36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK  115 (198)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEE
Confidence            3457999999999998863       58999999999  999999999999887667899999999875432 3479999


Q ss_pred             EEEEEEEEcCCCCc-ceecc---------ceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEeeec
Q 021593          241 AEFTLRLLDQAQAR-HIAGK---------ADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN  308 (310)
Q Consensus       241 ~~~~~~l~~~~~~~-~~~~~---------~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~t~  308 (310)
                      ++|+|.|+||.++. ++...         ..+.|...+.+|||.+||++++|++  +|||+||+|+|+|+|+|+...+
T Consensus       116 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~~  191 (198)
T 4ghu_A          116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD  191 (198)
T ss_dssp             CCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC-
T ss_pred             EEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCCC
Confidence            99999999998643 33211         1222334567899999999999996  7999999999999999876543

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.93  E-value=5.2e-26  Score=182.56  Aligned_cols=132  Identities=16%  Similarity=0.177  Sum_probs=103.2

Q ss_pred             CCceEEEEEccccccCC-----C--eeecccEEeC--CeEEEEEEeeCCCCCC-CCcEEEEEEEecCCCCC-CCCCeEEE
Q 021593          173 PSIKHVWRIENFSKLRS-----E--CCDSQVFSSG--DQKWQIQLYPKGRRHG-TGTHLAVYLALADSTTL-TPGSKIYA  241 (310)
Q Consensus       173 ~~~~~~w~i~~fs~~~~-----~--~~~S~~f~~~--g~~w~i~~yp~g~~~~-~~~~ls~~L~~~~~~~~-~~~w~~~~  241 (310)
                      ..+.|+|+|.|||.++.     +  .+.|+.|.++  |++|+|++||+|++.+ .++|||+||++.+.+.+ ...|++.+
T Consensus         3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a   82 (160)
T 1lb6_A            3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG   82 (160)
T ss_dssp             CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred             cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence            35789999999999862     3  7999999999  9999999999998654 36899999999875443 34699999


Q ss_pred             EEEEEEEcCCCCc---ceecc-----ceeecCCC-----CCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEee
Q 021593          242 EFTLRLLDQAQAR---HIAGK-----ADFWFSAS-----NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI  306 (310)
Q Consensus       242 ~~~~~l~~~~~~~---~~~~~-----~~~~f~~~-----~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~  306 (310)
                      +|+|+|+||.++.   +....     ....|...     ..+|||++||++++|++  ++||+||+|+|+|+|+|+.+
T Consensus        83 ~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~~  158 (160)
T 1lb6_A           83 TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRFD  158 (160)
T ss_dssp             EEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC---
T ss_pred             eEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEeec
Confidence            9999999997642   11111     11235431     23799999999999996  79999999999999999864

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.92  E-value=2.4e-26  Score=189.53  Aligned_cols=131  Identities=22%  Similarity=0.354  Sum_probs=108.2

Q ss_pred             CCceEEEEEccccccC-----CC--eeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeEEEE
Q 021593          173 PSIKHVWRIENFSKLR-----SE--CCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAE  242 (310)
Q Consensus       173 ~~~~~~w~i~~fs~~~-----~~--~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~  242 (310)
                      ..+.|+|+|.|||.++     ++  .++|++|.++  |++|+|.+||+|++.+.++|+|+||++.+.+.+ ...|++.++
T Consensus        38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~  117 (192)
T 2gkw_A           38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK  117 (192)
T ss_dssp             CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred             cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence            5789999999999986     23  5999999999  999999999999876667899999999875543 347999999


Q ss_pred             EEEEEEcCCCCc-ceecc-----ceeecCCC----CCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEe
Q 021593          243 FTLRLLDQAQAR-HIAGK-----ADFWFSAS----NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG  305 (310)
Q Consensus       243 ~~~~l~~~~~~~-~~~~~-----~~~~f~~~----~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~  305 (310)
                      |+|+|+||.+++ ++...     ..+.|...    +.+|||++||++++|++  +|||+||+|+|+|+|+|.+
T Consensus       118 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~  188 (192)
T 2gkw_A          118 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD  188 (192)
T ss_dssp             EEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred             EEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence            999999998763 33221     12557542    46899999999999986  6999999999999998754

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.92  E-value=5.2e-26  Score=192.40  Aligned_cols=140  Identities=17%  Similarity=0.200  Sum_probs=111.7

Q ss_pred             CCCceEEEEEcccccccc-c-cc--ceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEEE
Q 021593           15 APPTHYTVKIQSFSLLLK-N-SV--EKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEVY   87 (310)
Q Consensus        15 ~~~~~~~~~I~nfs~~~~-~-~~--~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~~   87 (310)
                      ...|+|+|+|.|||.++. . .+  ..++|++|.+|  ||+|+|.+||||++ .+.++|+||||.+++++.. ...|++.
T Consensus        73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~Wp~~  151 (228)
T 1flk_A           73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK  151 (228)
T ss_dssp             CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCG-GGTTTEEEEEECCBCCTTTTSSCSSCC
T ss_pred             CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEecCCccccCCCcEE
Confidence            468999999999999875 2 23  38999999999  99999999999987 4668999999999876543 3579999


Q ss_pred             EEEEEEEEeCCCCceEEeecc--ccceeeccC----CCccccccceeeccccccCCCCeeecCEEEEEEEEEEeee
Q 021593           88 AVFRLFLLDQNKGNFLILQDA--MGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE  157 (310)
Q Consensus        88 ~~f~~~l~n~~~~~~~~~~~~--~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~  157 (310)
                      ++|+|+|+||.+.........  -...+.|..    ...+|||.+||++++|+  ++|||+||+|+|+|+|.|.+.
T Consensus       152 a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~  225 (228)
T 1flk_A          152 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDL  225 (228)
T ss_dssp             CCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHS--SSTTCCSSEEEEEEECCCTTS
T ss_pred             EEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHc--cCCCccCCEEEEEEEEEcccc
Confidence            999999999998764322110  002235652    34679999999999999  589999999999999987653

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.91  E-value=1.2e-25  Score=190.12  Aligned_cols=133  Identities=22%  Similarity=0.341  Sum_probs=109.6

Q ss_pred             CCceEEEEEccccccCC-------CeeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeEEEE
Q 021593          173 PSIKHVWRIENFSKLRS-------ECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAE  242 (310)
Q Consensus       173 ~~~~~~w~i~~fs~~~~-------~~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~  242 (310)
                      ..+.|+|+|.|||.++.       ..++|++|.++  |++|+|.+||+|++.+.++|+|+||++.+++.+ ...|++.++
T Consensus        74 ~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a~  153 (228)
T 1flk_A           74 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK  153 (228)
T ss_dssp             SSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCCC
T ss_pred             cCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEEE
Confidence            57899999999999862       27999999999  999999999999877677899999999875543 347999999


Q ss_pred             EEEEEEcCCCCc-ceec-----cceeecCC----CCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEeee
Q 021593          243 FTLRLLDQAQAR-HIAG-----KADFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGIS  307 (310)
Q Consensus       243 ~~~~l~~~~~~~-~~~~-----~~~~~f~~----~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~t  307 (310)
                      |+|+|+||.+++ +...     ...+.|..    .+.+|||++||++++|++  +|||+||+|+|+|+|+|.+..
T Consensus       154 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~  226 (228)
T 1flk_A          154 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP  226 (228)
T ss_dssp             EEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTSC
T ss_pred             EEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEccccc
Confidence            999999998764 3322     12234642    356899999999999997  799999999999999886543

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.90  E-value=4.2e-24  Score=202.57  Aligned_cols=136  Identities=18%  Similarity=0.334  Sum_probs=111.9

Q ss_pred             CCCceEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEEEEE
Q 021593           15 APPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFL   94 (310)
Q Consensus        15 ~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l   94 (310)
                      ...++|+|+|+|||.++    +.++|++|.+||++|+|.+||+|+...++.+||||||.|.+. ..+.+|.+.|+|+|.|
T Consensus        28 ~~~~~~~w~I~nfS~~~----~~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l  102 (522)
T 2f1z_A           28 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKI  102 (522)
T ss_dssp             CSEEEEEEEESSCTTCC----SCEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEE
T ss_pred             cCCcEEEEEECChhhcC----CceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEE
Confidence            55799999999999986    389999999999999999999997522367899999999876 3467899999999999


Q ss_pred             EeCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEeeec
Q 021593           95 LDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKER  158 (310)
Q Consensus        95 ~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~~  158 (310)
                      +|+.++.....+.   ..+.|.....+|||.+||++++|.++.+|||+||+++|+|+|+|..+.
T Consensus       103 ~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~  163 (522)
T 2f1z_A          103 INYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH  163 (522)
T ss_dssp             CCTTCGGGCEEEE---CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred             EcCCCCccceecc---ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence            9998765544333   568888767889999999999998778999999999999999996544

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.90  E-value=7.7e-24  Score=188.18  Aligned_cols=128  Identities=28%  Similarity=0.491  Sum_probs=106.4

Q ss_pred             CceEEEEEccccccC---CCeeecccEEeCCe---EEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 021593          174 SIKHVWRIENFSKLR---SECCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRL  247 (310)
Q Consensus       174 ~~~~~w~i~~fs~~~---~~~~~S~~f~~~g~---~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l  247 (310)
                      .+.|+|+|.|||.++   ++.+.|+.|.+||+   +|+|.+||+|++.+.++|+|+||+|...    +.|++.++|+|+|
T Consensus         6 ~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~~l   81 (312)
T 3hqi_A            6 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSI   81 (312)
T ss_dssp             EEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEEEE
T ss_pred             EEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEEEEE
Confidence            468999999999986   67899999999985   9999999999877667899999999864    2589999999999


Q ss_pred             EcCCCCccee--ccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEee
Q 021593          248 LDQAQARHIA--GKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI  306 (310)
Q Consensus       248 ~~~~~~~~~~--~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~  306 (310)
                      +||+++....  ....+.|.. ..+|||.+||+|++|+++.+|||+||+|+|+|+|+|++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~  141 (312)
T 3hqi_A           82 LNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD  141 (312)
T ss_dssp             ECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred             EeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence            9998865432  245678875 468999999999999876679999999999999999964

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.89  E-value=1.3e-23  Score=199.20  Aligned_cols=135  Identities=13%  Similarity=0.245  Sum_probs=112.3

Q ss_pred             CCCceEEEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCCC-CCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEcC
Q 021593          172 APSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHG-TGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQ  250 (310)
Q Consensus       172 ~~~~~~~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~~-~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~  250 (310)
                      ...+.|+|+|.|||.+++ .++|++|.+||++|+|.+||+|+..+ .++|||+||+|.+. ..+.+|.+.|+|+|.|+|+
T Consensus        28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~  105 (522)
T 2f1z_A           28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY  105 (522)
T ss_dssp             CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCT
T ss_pred             cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcC
Confidence            456899999999999875 89999999999999999999997543 56799999999876 4566899999999999999


Q ss_pred             CCCc-ceeccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEeeec
Q 021593          251 AQAR-HIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN  308 (310)
Q Consensus       251 ~~~~-~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~t~  308 (310)
                      .++. +..+...++|.....+|||.+||++++|.++.+|||+||+++|+|+|+|...++
T Consensus       106 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g  164 (522)
T 2f1z_A          106 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG  164 (522)
T ss_dssp             TCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBS
T ss_pred             CCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccccc
Confidence            8764 455567788987778899999999999977668999999999999999975543

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.51  E-value=5e-14  Score=132.90  Aligned_cols=136  Identities=20%  Similarity=0.266  Sum_probs=107.5

Q ss_pred             ccccCCCceEEEEEcccccccccccceEEcCcEEE-cCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCcEE-E
Q 021593           11 SVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEA-GGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS-LQHGWEV-Y   87 (310)
Q Consensus        11 ~~~~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~-~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~-~~~~w~~-~   87 (310)
                      ++++..+..+.|+|.||++++...+..++||+|+. .||+++|.++|++      ..|+|||++|+.++. ...+|++ .
T Consensus       399 s~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~------~~~~~~~~~l~sG~~D~~L~WP~~~  472 (592)
T 4gwm_A          399 NLSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH------VTNAGIYFHLISGANDDQLQWPCPW  472 (592)
T ss_dssp             EEESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS------SSEEEEEEEEECCTTGGGSCSSCCS
T ss_pred             EEeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC------CceEEEEEEEecCCCCCCccCCCCC
Confidence            35677888999999999999875567899999976 5999999999875      468999999999755 3468999 5


Q ss_pred             EEEEEEEEeCCCCceEEeeccccceee---------------cc------------C-----CCccccccceeecccccc
Q 021593           88 AVFRLFLLDQNKGNFLILQDAMGAERR---------------FH------------R-----LKREWGFDEFIPIKAFND  135 (310)
Q Consensus        88 ~~f~~~l~n~~~~~~~~~~~~~~~~~~---------------F~------------~-----~~~~~G~~~fi~~~~l~~  135 (310)
                      -+++|+|+||++.......    ....               |.            .     .+.+|||..||++++|. 
T Consensus       473 ~q~t~~llDQ~pd~~~rms----~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~-  547 (592)
T 4gwm_A          473 QQATMTLLDQNPDIRQRMS----NQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK-  547 (592)
T ss_dssp             EEEEEEECCCCSSGGGCCC----EEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT-
T ss_pred             CEEEEEEeCCCCChHhcCc----eeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh-
Confidence            7899999999866553221    1111               21            1     12458999999999999 


Q ss_pred             CCCCeeecCEEEEEEEEEEeeec
Q 021593          136 ASNGFLLEDTCVFGAEVFVSKER  158 (310)
Q Consensus       136 ~~~~yl~dD~l~i~~~v~v~~~~  158 (310)
                       ..+||+||.++|.++|..+...
T Consensus       548 -~r~fiK~d~~~i~~~~eD~~~l  569 (592)
T 4gwm_A          548 -SRDFIKGDDVYILLTVEDISHL  569 (592)
T ss_dssp             -STTSSBTTBEEEEEEEEECGGG
T ss_pred             -hcCcccCCeEEEEEEEEeCccc
Confidence             7789999999999999777655

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.44  E-value=1.6e-13  Score=129.41  Aligned_cols=126  Identities=17%  Similarity=0.204  Sum_probs=97.4

Q ss_pred             CCCCceEEEEEccccccC---CCeeecccEE-eCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeE-EEEEE
Q 021593          171 DAPSIKHVWRIENFSKLR---SECCDSQVFS-SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKI-YAEFT  244 (310)
Q Consensus       171 ~~~~~~~~w~i~~fs~~~---~~~~~S~~f~-~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~-~~~~~  244 (310)
                      .-++..+.|+|.||+++.   +..++||.|. ..||+++|.+||++.     .|+|+|++|.+++++ ...|++ .-+++
T Consensus       402 ~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~~-----~~~~~~~~l~sG~~D~~L~WP~~~~q~t  476 (592)
T 4gwm_A          402 ETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAHV-----TNAGIYFHLISGANDDQLQWPCPWQQAT  476 (592)
T ss_dssp             SSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCSS-----SEEEEEEEEECCTTGGGSCSSCCSEEEE
T ss_pred             eCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCCC-----ceEEEEEEEecCCCCCCccCCCCCCEEE
Confidence            345678999999999987   4689999886 579999999999763     599999999986543 467999 57899


Q ss_pred             EEEEcCCCCcceeccceeec---------------C------------C-----CCCCCChhcccCccccCCCCCCeeeC
Q 021593          245 LRLLDQAQARHIAGKADFWF---------------S------------A-----SNPESGWARYVSFTYFNKPGNGCLVK  292 (310)
Q Consensus       245 ~~l~~~~~~~~~~~~~~~~f---------------~------------~-----~~~~~G~~~fi~~~~L~~~~~~~l~d  292 (310)
                      |.|+||+.....++.....|               .            +     ++.+|||+.||+++.|+.  ..||+|
T Consensus       477 ~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~  554 (592)
T 4gwm_A          477 MTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKG  554 (592)
T ss_dssp             EEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBT
T ss_pred             EEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccC
Confidence            99999975432211211222               1            1     124689999999999996  789999


Q ss_pred             CEEEEEEEEEE
Q 021593          293 DVCLVEAEVTV  303 (310)
Q Consensus       293 D~l~i~~~v~i  303 (310)
                      |.|+|.+.|+=
T Consensus       555 d~~~i~~~~eD  565 (592)
T 4gwm_A          555 DDVYILLTVED  565 (592)
T ss_dssp             TBEEEEEEEEE
T ss_pred             CeEEEEEEEEe
Confidence            99999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	310
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	1e-20
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	1e-19
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	2e-18
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	5e-16
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	1e-17
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	3e-15
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	1e-16
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	1e-13

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (208), Expect = 1e-20
 Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 11/148 (7%)

Query: 20  YTVKIQSFSLLLKNSVEKYESGDFEAGG---YKWKLVLYPAGNKSKNVKEHISVYLAMEN 76
           Y   I +FS   +   E  +S  F +G     KW L + P G   ++ K+++S+YL + +
Sbjct: 7   YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLSLYLLLVS 65

Query: 77  TSSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDA 136
                   EV A F+  +L+        ++             ++WGF +FI      D 
Sbjct: 66  C----PKSEVRAKFKFSILNAKGEETKAMESQR---AYRFVQGKDWGFKKFIRRDFLLDE 118

Query: 137 SNGFLLEDTCVFGAEVFVSKERSTGKGE 164
           +NG L +D      EV V ++     G+
Sbjct: 119 ANGLLPDDKLTLFCEVSVVQDSVNISGQ 146

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 1e-19
 Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 11/135 (8%)

Query: 176 KHVWRIENFSKLRS---ECCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALAD 229
            ++W I NFS  R    E   S  FSSG     KW +++ PKG    +  +L++YL L  
Sbjct: 6   SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS 65

Query: 230 STTLTPGSKIYAEFTLRLLDQAQAR-HIAGKADFWFSASNPESGWARYVSFTYFNKPGNG 288
                  S++ A+F   +L+              +      + G+ +++   +     NG
Sbjct: 66  CPK----SEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANG 121

Query: 289 CLVKDVCLVEAEVTV 303
            L  D   +  EV+V
Sbjct: 122 LLPDDKLTLFCEVSV 136

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (193), Expect = 2e-18
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 20/150 (13%)

Query: 176 KHVWRIENFSKLR-------SECCDSQVFSSGDQ--KWQIQLYPKGRRHGTGTHLAVYLA 226
             +W+I +F + R            S  F +     K  +++Y  G   G GTHL+++  
Sbjct: 4   VFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 63

Query: 227 LADSTTLTPG-SKIYAEFTLRLLDQAQARHI---------AGKADFWFSASNPESGWARY 276
           +               + TL LLDQ    H+         +       +  N  SG   +
Sbjct: 64  VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 123

Query: 277 VSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 306
              +   +  N  +  D   ++A V + G+
Sbjct: 124 CPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 152

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 5e-16
 Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 14/149 (9%)

Query: 19  HYTVKIQSFSLLLKNSVEK----YESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYL 72
            +  KI  F    + +V        S  F     GYK  L +Y  G+ +     H+S++ 
Sbjct: 4   VFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGR-GTHLSLFF 62

Query: 73  AMENTSSLQHG-WEVYAVFRLFLLDQNKGN-----FLILQDAMGAERRFHRLKREWGFDE 126
            +    +     W       L LLDQN        F     +   +R  + +    G   
Sbjct: 63  VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 122

Query: 127 FIPIKAFNDASNGFLLEDTCVFGAEVFVS 155
           F P+    +A N ++ +D     A V ++
Sbjct: 123 FCPVSKM-EAKNSYVRDDAIFIKAIVDLT 150

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 1e-17
 Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 22/153 (14%)

Query: 176 KHVWRIENFSKL-------RSECCDSQVFSSGDQ--KWQIQLYPKGRRHGTGTHLAVYLA 226
             +W+I ++ +        ++    SQ F +G    K   ++Y  G   G GTHL+++  
Sbjct: 4   VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 63

Query: 227 LADSTTLTPGS-KIYAEFTLRLLDQAQARHIAGKA----------DFWFSASNPESGWAR 275
           +               + TL L+DQ  +R   G A                 N  SG   
Sbjct: 64  IMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPV 123

Query: 276 YVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN 308
           +V+ T         +  D   ++  V    + +
Sbjct: 124 FVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD 154

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 3e-15
 Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 16/151 (10%)

Query: 19  HYTVKIQSFSLLLKNSV----EKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYL 72
               KI+ +    + +V        S  F  G  GYK    +Y  G+       H+S++ 
Sbjct: 4   VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGK-GTHLSLFF 62

Query: 73  AMENTSSLQH-GWEVYAVFRLFLLDQNKGNFLIL------QDAMGAERRFHRLKREWGFD 125
            +          W       L L+DQ      +        ++   ++    +    G  
Sbjct: 63  VIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCP 122

Query: 126 EFIPIKAFNDASNGFLLEDTCVFGAEVFVSK 156
            F+        +  ++ +DT      V  S 
Sbjct: 123 VFVAQTVLE--NGTYIKDDTIFIKVIVDTSD 151

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 1e-16
 Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 18/150 (12%)

Query: 19  HYTVKIQSFSLLLKNSV----EKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYL 72
            Y  KI +F + LK           S  F  G  GYK  + L+     ++    +IS+++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 73  AMENTSSLQH-GWEVYAVFRLFLLDQNKG----NFLILQDAMGAERRFHRLKRE-----W 122
                    H  W      RL +LDQ++     N   + DA      F R         +
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 123 GFDEFIPIKAFNDASNGFLLEDTCVFGAEV 152
           G+  F+ ++A       F+ +DT +   EV
Sbjct: 126 GYVTFMHLEALR--QRTFIKDDTLLVRCEV 153

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 19/151 (12%), Positives = 45/151 (29%), Gaps = 26/151 (17%)

Query: 176 KHVWRIENFSKLR-------SECCDSQVFSSGDQ--KWQIQLYPKGRRHG-TGTHLAVYL 225
            ++W+I NF                S  F +G    K  ++L+ +         ++++++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 226 ALADSTTLTP-GSKIYAEFTLRLLDQAQ-------------ARHIAGKADFWFSASNPES 271
                   +           L +LDQ++                +          +    
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 272 GWARYVSFTYFNKPGNGCLVKDVCLVEAEVT 302
           G+  ++      +     +  D  LV  EV+
Sbjct: 126 GYVTFMHLEALRQ--RTFIKDDTLLVRCEVS 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.95
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.94
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.94
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.94
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.93
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.93
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.92
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.91

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-28  Score=192.92  Aligned_cols=136  Identities=26%  Similarity=0.403  Sum_probs=116.3

Q ss_pred             CCCceEEEEEcccccccccccceEEcCcEEEcCe---eEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEE
Q 021593           15 APPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGY---KWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFR   91 (310)
Q Consensus        15 ~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~---~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~   91 (310)
                      +...+|+|+|+||+.+++..+++++||.|.+||+   +|+|.+||+|.. ++..+||||||.+.++.    .|++.++|+
T Consensus         2 v~~~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~-~~~~~~lSv~L~~~~~~----~~~v~~~~~   76 (146)
T d2cr2a1           2 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKFK   76 (146)
T ss_dssp             EEEEEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSS-SSSSSBCCEEEECCCCS----SSEEEEECE
T ss_pred             eeEEEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCC-CCCCCEEEEEEEeccCC----CceEEEEEE
Confidence            3457899999999988765578999999998874   899999999987 67788999999998754    499999999


Q ss_pred             EEEEeCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEeeec
Q 021593           92 LFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKER  158 (310)
Q Consensus        92 ~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~~  158 (310)
                      |.|+|++++.....+.   ..+.+.....+|||.+||++++|+++.+|||.||+|+|+|+|+|+++.
T Consensus        77 ~~l~n~~~~~~~~~~~---~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          77 FSILNAKGEETKAMES---QRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             EEEECTTSCEEEEEEC---SCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             EEEEcCCCCcccceEe---cceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            9999999887766544   333344445789999999999999889999999999999999999877

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-27  Score=188.39  Aligned_cols=137  Identities=21%  Similarity=0.309  Sum_probs=108.8

Q ss_pred             CceEEEEEccccccccc----ccceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCcEEEEE
Q 021593           17 PTHYTVKIQSFSLLLKN----SVEKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS-LQHGWEVYAV   89 (310)
Q Consensus        17 ~~~~~~~I~nfs~~~~~----~~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~-~~~~w~~~~~   89 (310)
                      .|+|+|+|.|||.+++.    .++.++||+|.++  ||+|+|.+||+|+. .+.++|+||||.+.++.. .+..|++.++
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~-~~~~~~lSlyL~l~~~~~d~~~~~~~~~~   80 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFNQK   80 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCcCcccccceeeE
Confidence            58999999999998752    2557999999998  99999999999987 567899999999987754 2457999999


Q ss_pred             EEEEEEeCCCCceEEeecccc-ceee----ccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEe
Q 021593           90 FRLFLLDQNKGNFLILQDAMG-AERR----FHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVS  155 (310)
Q Consensus        90 f~~~l~n~~~~~~~~~~~~~~-~~~~----F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~  155 (310)
                      |+|+|+||.+........... ....    +.....+|||.+||++++|. +.+|||.||+|+|+|+|.|.
T Consensus        81 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~-~~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          81 VTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKME-AKNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCC-CSTTTSCSSCEEEEEEECCT
T ss_pred             EEEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhc-ccCCcEeCCEEEEEEEEEec
Confidence            999999998776544321100 1122    33345789999999999995 45799999999999999764

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.1e-27  Score=184.50  Aligned_cols=138  Identities=22%  Similarity=0.301  Sum_probs=109.5

Q ss_pred             cCCCceEEEEEccccccccc----ccceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCcEE
Q 021593           14 EAPPTHYTVKIQSFSLLLKN----SVEKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS-LQHGWEV   86 (310)
Q Consensus        14 ~~~~~~~~~~I~nfs~~~~~----~~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~-~~~~w~~   86 (310)
                      +...|+|+|+|+||+++++.    .+..++||+|.+|  ||+|+|.+||+|...+...+|+||||.+.++.. ...+|++
T Consensus         1 ~~~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~   80 (155)
T d1lb6a_           1 QQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPF   80 (155)
T ss_dssp             CCCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSC
T ss_pred             CccccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcE
Confidence            35689999999999998752    2567999999999  999999999999764455789999999988754 3458999


Q ss_pred             EEEEEEEEEeCCCCceEEeecc----cc-----ceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEE
Q 021593           87 YAVFRLFLLDQNKGNFLILQDA----MG-----AERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF  153 (310)
Q Consensus        87 ~~~f~~~l~n~~~~~~~~~~~~----~~-----~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~  153 (310)
                      .++++|.|+||++.........    ..     ..+.|.....+|||.+||++++|+  ++|||+||+|+|+|+|+
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~--~~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          81 QGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             CSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEE
T ss_pred             EEEEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhc--cCCCEECCEEEEEEEEE
Confidence            9999999999988755322110    00     012334445679999999999998  68999999999999985

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.2e-27  Score=183.27  Aligned_cols=129  Identities=26%  Similarity=0.423  Sum_probs=109.0

Q ss_pred             ceEEEEEccccccC---CCeeecccEEeCC---eEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEEEEEEE
Q 021593          175 IKHVWRIENFSKLR---SECCDSQVFSSGD---QKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLL  248 (310)
Q Consensus       175 ~~~~w~i~~fs~~~---~~~~~S~~f~~~g---~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~  248 (310)
                      .+|+|+|.||+.++   ++.++||.|.++|   ++|+|.+||+|...+.++|+||||.+.+..    .|++.++|+|.|+
T Consensus         5 ~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~~~~~~~lSv~L~~~~~~----~~~v~~~~~~~l~   80 (146)
T d2cr2a1           5 FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFSIL   80 (146)
T ss_dssp             EEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSSSSSSSBCCEEEECCCCS----SSEEEEECEEEEE
T ss_pred             EEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCCCCCCCEEEEEEEeccCC----CceEEEEEEEEEE
Confidence            47999999999886   3689999999877   489999999999887788999999998743    5999999999999


Q ss_pred             cCCCCcce-eccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEeee
Q 021593          249 DQAQARHI-AGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGIS  307 (310)
Q Consensus       249 ~~~~~~~~-~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~t  307 (310)
                      ||+++... .......+...+.+|||++||++++|+++.+|||+||+|+|+|+|+|++++
T Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          81 NAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             CTTSCEEEEEECSCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             cCCCCcccceEecceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            99876532 223333344456789999999999999888899999999999999999765

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.6e-27  Score=186.56  Aligned_cols=135  Identities=16%  Similarity=0.201  Sum_probs=108.8

Q ss_pred             CceEEEEEccccccccc----ccceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEEEEE
Q 021593           17 PTHYTVKIQSFSLLLKN----SVEKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEVYAV   89 (310)
Q Consensus        17 ~~~~~~~I~nfs~~~~~----~~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~~~~   89 (310)
                      +|+|+|+|.||+.+++.    .+..++||+|.++  ||+|+|.+||+|++ ++..+||||||.+.+++.. ...|++.++
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~-~~~~~~lSlyL~l~~~~~d~~~~~~~~~~   80 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFKQK   80 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTTTTSCSSCCCC
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEccCCcCcccCCcEEEE
Confidence            69999999999998652    2568999999998  99999999999987 5678999999999987542 457999999


Q ss_pred             EEEEEEeCCCCceEEeeccc--c----ceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEE
Q 021593           90 FRLFLLDQNKGNFLILQDAM--G----AERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV  154 (310)
Q Consensus        90 f~~~l~n~~~~~~~~~~~~~--~----~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v  154 (310)
                      |+|.|+||.+..........  .    ..+.+.....+|||.+||++++|+  ++|||+||+|+|+|+|.+
T Consensus        81 ~~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~V~~  149 (155)
T d1l0aa1          81 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT  149 (155)
T ss_dssp             EEEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHH--TTTTCBTTEEEEEEEECC
T ss_pred             EEEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhh--hCCCEECCEEEEEEEEEe
Confidence            99999999887654332100  0    122233445689999999999998  689999999999999854

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.6e-27  Score=184.81  Aligned_cols=130  Identities=22%  Similarity=0.329  Sum_probs=105.7

Q ss_pred             CceEEEEEccccccC-------CCeeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeEEEEE
Q 021593          174 SIKHVWRIENFSKLR-------SECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAEF  243 (310)
Q Consensus       174 ~~~~~w~i~~fs~~~-------~~~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~~  243 (310)
                      .+.++|+|.|||.++       .+.++||.|.++  |++|+|.+||+|+..+.++|+||||++.++..+ +..|++.++|
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKV   81 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccccceeeEE
Confidence            478999999999875       246899999998  999999999999987777899999999875433 4579999999


Q ss_pred             EEEEEcCCCCcceecc---------ceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEE
Q 021593          244 TLRLLDQAQARHIAGK---------ADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVH  304 (310)
Q Consensus       244 ~~~l~~~~~~~~~~~~---------~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~  304 (310)
                      +|+|+||.++.+....         ..+.+...+.+|||.+||++++|+. ++|||+||+|+|+|+|+|.
T Consensus        82 ~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~~-~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          82 TLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCCC-STTTSCSSCEEEEEEECCT
T ss_pred             EEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhcc-cCCcEeCCEEEEEEEEEec
Confidence            9999999876533211         1222334467899999999999963 4799999999999999764

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.5e-26  Score=180.80  Aligned_cols=131  Identities=21%  Similarity=0.332  Sum_probs=106.6

Q ss_pred             CceEEEEEccccccC-------CCeeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCCC-CCCCCeEEEEE
Q 021593          174 SIKHVWRIENFSKLR-------SECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTT-LTPGSKIYAEF  243 (310)
Q Consensus       174 ~~~~~w~i~~fs~~~-------~~~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~-~~~~w~~~~~~  243 (310)
                      +++|+|+|.||+.+.       ...++|+.|.++  |++|+|.+||+|++.+.++|+||||++.+.+. ....|++.++|
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKV   81 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTTTTSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccCCcEEEEE
Confidence            578999999999875       347899999988  89999999999998777789999999987543 34579999999


Q ss_pred             EEEEEcCCCCc-ceecc---------ceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEee
Q 021593          244 TLRLLDQAQAR-HIAGK---------ADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI  306 (310)
Q Consensus       244 ~~~l~~~~~~~-~~~~~---------~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~  306 (310)
                      +|+|+||.++. +....         ..+.+...+.+|||++||++++|++  +|||+||+|+|+|+|.+...
T Consensus        82 ~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~V~~~~~  152 (155)
T d1l0aa1          82 TLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDL  152 (155)
T ss_dssp             EEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHHT--TTTCBTTEEEEEEEECCSSS
T ss_pred             EEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhhh--CCCEECCEEEEEEEEEeCCC
Confidence            99999998754 22111         1233444567899999999999986  79999999999999976443

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.3e-25  Score=172.78  Aligned_cols=128  Identities=16%  Similarity=0.181  Sum_probs=103.2

Q ss_pred             CCceEEEEEccccccC-------CCeeecccEEeC--CeEEEEEEeeCCCCCCC-CcEEEEEEEecCCCC-CCCCCeEEE
Q 021593          173 PSIKHVWRIENFSKLR-------SECCDSQVFSSG--DQKWQIQLYPKGRRHGT-GTHLAVYLALADSTT-LTPGSKIYA  241 (310)
Q Consensus       173 ~~~~~~w~i~~fs~~~-------~~~~~S~~f~~~--g~~w~i~~yp~g~~~~~-~~~ls~~L~~~~~~~-~~~~w~~~~  241 (310)
                      ..+.++|+|.||+.++       +..++||.|.++  |++|+|.+||+|...+. ++|+|+||++.++.. ...+|++.+
T Consensus         3 ~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~~   82 (155)
T d1lb6a_           3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG   82 (155)
T ss_dssp             CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred             cccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcEEE
Confidence            4689999999999875       246999999998  99999999999987543 579999999987543 345799999


Q ss_pred             EEEEEEEcCCCCccee-cc------------ceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEE
Q 021593          242 EFTLRLLDQAQARHIA-GK------------ADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT  302 (310)
Q Consensus       242 ~~~~~l~~~~~~~~~~-~~------------~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~  302 (310)
                      +++|.|+||++..... ..            ..+.+...+.+|||.+||++++|++  +|||+||+|+|+|+|+
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~--~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          83 TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             EEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEE
T ss_pred             EEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhcc--CCCEECCEEEEEEEEE
Confidence            9999999998753211 00            1123444456899999999999986  7999999999999986