Citrus Sinensis ID: 021594

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRRKPSGKFQLSS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccc
Coil and Loop (DISEMBL)
MRTTFPEYVVALATIVGSVLFSIFGgvgiaclplglifsfirrpkaviTRSQYIKEATELGKKARELKKAADTLHqeersgskgrkwrkNVKSVEKELLQLEEDVKLLEEMypqgekaetsWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLinpplhpflnEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYaafgwrrrkpsgkfqlss
Flexible Loop (DISEMBL)
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAAdtlhqeersgskgrkwrknvKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAafgwrrrkpsgkfqlss
Low Complexity Region (SEG)
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTaafaffcfylllaVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRRKPSGKFQLSS
Disordered region (IsUnstruct)
****FPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIK*************************************************VKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWR************
Disordered Region (DISOPRED)
*RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITR********************************************EKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAF***************
Disordered Region (DISEMBL)
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELK***********************KSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR**********
Disordered Region (DISPRO)
*RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR**********
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKExxxxxxxxxxxxxxxxxxxxxERSGSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRRKPSGKFQLSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
Q9M028	509	LIMR family protein At5g0	yes	no	1.0	0.609	0.909	1e-167
Q9SR93	509	LIMR family protein At3g0	yes	no	1.0	0.609	0.903	1e-166
Q658I5	510	LIMR family protein Os06g	yes	no	1.0	0.607	0.832	1e-146
D8TFA8	410	LIMR family protein SELMO	N/A	no	0.667	0.504	0.589	8e-70
D8S067	264	LIMR family protein SELMO	N/A	no	0.583	0.685	0.490	9e-56
D8RQM9	185	CASP-like protein SELMODR	N/A	no	0.574	0.962	0.535	6e-55
D8TFB0	321	LIMR family protein SELMO	N/A	no	0.580	0.560	0.509	4e-52
D8S069	187	CASP-like protein SELMODR	N/A	no	0.583	0.967	0.522	1e-51
D8S072	166	CASP-like protein SELMODR	N/A	no	0.532	0.993	0.513	2e-48
Q54QP7	507	LIMR family protein DDB_G	yes	no	0.9	0.550	0.351	4e-46

>sp|Q9M028|LMBD2_ARATH LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1

 Score =  588 bits (1516), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 282/310 (90%), Positives = 301/310 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKAR+LKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARDLKKAADALHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK VLGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR 300
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FVVLAGLTF+YY AFGWRR+
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVVLAGLTFLYYIAFGWRRK 499

Query: 301 KPSGKFQLSS 310
           KPSG+FQLS+
Sbjct: 500 KPSGRFQLST 509

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR93|LMBD1_ARATH LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930 PE=2 SV=2

 Score =  584 bits (1505), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 280/310 (90%), Positives = 300/310 (96%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARELKKAADGLHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK +LGI+G IVS+AWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR 300
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FV+LAGLTF+YY AFGWRR+
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVILAGLTFLYYIAFGWRRK 499

Query: 301 KPSGKFQLSS 310
           K SG+FQLSS
Sbjct: 500 KTSGRFQLSS 509

Arabidopsis thaliana (taxid: 3702)

>sp|Q658I5|LMBD1_ORYSJ LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica GN=Os06g0128200 PE=2 SV=1

 Score =  516 bits (1329), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 258/310 (83%), Positives = 286/310 (92%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MR TFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSF+RRPKAVITRSQYIKEATEL
Sbjct: 201 MRATFPEYVVALATIVGSVLFTIFGGVGIACLPLGLIFSFVRRPKAVITRSQYIKEATEL 260

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAA+ LHQEE+SG KGRKWRKNVK++ KEL+ LE+D+K LEEMYPQGE+AE 
Sbjct: 261 GKKARELKKAAEALHQEEKSGKKGRKWRKNVKALGKELVLLEDDMKALEEMYPQGEQAEA 320

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGY+ KL+ G +G I+S+AWVAHIVIYLLI+PPL  FLNE+F+KLD +WGLLGT
Sbjct: 321 TWALTVLGYIGKLLFGAVGLIISIAWVAHIVIYLLIDPPLSSFLNEIFVKLDGVWGLLGT 380

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLL+AVIAG MMLGL+LVFITIHPMKWG TLMNSFLFNVGLILLCSISVIQF
Sbjct: 381 AAFAFFCFYLLIAVIAGEMMLGLKLVFITIHPMKWGGTLMNSFLFNVGLILLCSISVIQF 440

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR 300
           C+TAF YYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQ  FV LA LT  YYA FGWR+R
Sbjct: 441 CATAFAYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQYGFVALAILTLFYYAIFGWRKR 500

Query: 301 KPSGKFQLSS 310
           KP+G+FQLS+
Sbjct: 501 KPTGRFQLSN 510

Oryza sativa subsp. japonica (taxid: 39947)

>sp|D8TFA8|LMBD3_SELML LIMR family protein SELMODRAFT_432208 OS=Selaginella moellendorffii GN=SELMODRAFT_432208 PE=3 SV=2

 Score =  264 bits (674), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 125/212 (58%), Positives = 166/212 (78%), Gaps = 5/212 (2%)

Query: 8   YVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKAREL 67
           YV+ L TI+GS+LF +FGGVG+A LPL LIF+F  RPK VITR+QY+KEAT+L K++ EL
Sbjct: 168 YVITLNTIIGSILFMMFGGVGMATLPLSLIFAFKNRPKCVITRAQYVKEATDLAKRSNEL 227

Query: 68  KKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVL 127
           K A   L +EER G KGR +RKNVK V++EL+ LE+DV+ L E +PQGEK      LTVL
Sbjct: 228 KTATLGLQREERGGKKGRMFRKNVKKVQQELVFLEDDVEALNEAFPQGEK-----TLTVL 282

Query: 128 GYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFC 187
            YLAKLV GI+G  +S+ W+ HI++++L+NPP  PFLN+VFI+LD + GLLGT  FA FC
Sbjct: 283 FYLAKLVFGIVGLALSIIWLLHIIVFMLVNPPAFPFLNQVFIQLDTVGGLLGTTTFAIFC 342

Query: 188 FYLLLAVIAGAMMLGLRLVFITIHPMKWGATL 219
           +YL+++VI+G M LG+RL+F++IHPMK+  TL
Sbjct: 343 YYLVMSVISGKMHLGMRLLFLSIHPMKYQGTL 374

Selaginella moellendorffii (taxid: 88036)

>sp|D8S067|LMBD2_SELML LIMR family protein SELMODRAFT_416716 OS=Selaginella moellendorffii GN=SELMODRAFT_416716 PE=3 SV=1

 Score =  217 bits (553), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 107/218 (49%), Positives = 145/218 (66%), Gaps = 37/218 (16%)

Query: 2   RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIK-----E 56
           R  FP Y++AL+TI+ S+LF++FGGVG+A LPL LIF+F  RPK V TR+QY+K     E
Sbjct: 79  RAPFPTYMIALSTIIRSILFTMFGGVGMATLPLSLIFAFKNRPKCVTTRAQYVKVMALQE 138

Query: 57  ATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116
           AT+L K++ ELK A   L +EER G KGRK+RKNVK V++                    
Sbjct: 139 ATDLAKRSNELKTATLGLQREERGGKKGRKFRKNVKKVQQ-------------------- 178

Query: 117 KAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWG 176
            A+TSWALTV               +S+ W+ HI++++L+NPP  PFLN+VFI+LD  WG
Sbjct: 179 -ADTSWALTVRN-----------LALSIIWLLHIIVFMLVNPPAFPFLNQVFIQLDSAWG 226

Query: 177 LLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
           LLGT  FA FC+YL+++VI+G M LG+RL+ ++IHPMK
Sbjct: 227 LLGTTTFAIFCYYLVMSVISGEMHLGMRLLLLSIHPMK 264

Selaginella moellendorffii (taxid: 88036)

>sp|D8RQM9|CSPLJ_SELML CASP-like protein SELMODRAFT_413556 OS=Selaginella moellendorffii GN=SELMODRAFT_413556 PE=3 SV=1

 Score =  214 bits (546), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 113/211 (53%), Positives = 145/211 (68%), Gaps = 33/211 (15%)

Query: 29  IACLPLGLIFSFIRRPKAVITRSQYIK-----EATELGKKARELKKAADTLHQEERSGSK 83
           +A LPL LIF+F  RPK VITR+QY+K     E T   K++ EL             GS 
Sbjct: 1   MATLPLSLIFAFKNRPKCVITRAQYVKVMAWQEVT--AKRSNEL-------------GSP 45

Query: 84  GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVS 143
            R+     KS  +EL+ LE+DV+ L E +PQGEKA+TSWA+TVL YLAKLV GILG  +S
Sbjct: 46  TRR-----KSSIQELVFLEDDVQALNEAFPQGEKADTSWAVTVLFYLAKLVFGILGLALS 100

Query: 144 VAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGL 203
           + W+ HI++++L+NPP  PFLN+VFI+LD  WGLLGT AFA FC+YL+++VI+G M    
Sbjct: 101 IIWLLHIIVFMLVNPPAFPFLNQVFIQLDSAWGLLGTTAFAIFCYYLIMSVISGEMH--- 157

Query: 204 RLVFITIHPMKWGATLMNSFLFNVGLILLCS 234
                +IHPMK+  TLMNSFLFNV +ILLCS
Sbjct: 158 -----SIHPMKYQGTLMNSFLFNVAIILLCS 183

Selaginella moellendorffii (taxid: 88036)

>sp|D8TFB0|LMBD1_SELML LIMR family protein SELMODRAFT_432210 OS=Selaginella moellendorffii GN=SELMODRAFT_432210 PE=3 SV=1

 Score =  205 bits (521), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 107/210 (50%), Positives = 141/210 (67%), Gaps = 30/210 (14%)

Query: 5   FPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKA 64
           FP YV+AL     S+LF++FGGV IA LPL LIF+F  RPK V+     ++EAT+L K +
Sbjct: 142 FPTYVIAL-----SILFTMFGGVRIATLPLSLIFAFKNRPKCVMA----LQEATDLAKSS 192

Query: 65  RELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWAL 124
             LKK    L +EER G KGRK RKNVK V++E                     +TSWAL
Sbjct: 193 NVLKKVTLGLQREERGGKKGRKLRKNVKKVQQE---------------------DTSWAL 231

Query: 125 TVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFA 184
           TVL YLAKLV GILG  +S+ W+ HI++++L+NPP  PFLN+VFI+LD    LLGT  FA
Sbjct: 232 TVLFYLAKLVFGILGLALSIIWLLHILVFMLVNPPAFPFLNQVFIQLDSAGDLLGTTPFA 291

Query: 185 FFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
            FC+Y +++VI+G M LG++L+F++IHPMK
Sbjct: 292 IFCYYFVMSVISGEMHLGMKLLFLSIHPMK 321

Selaginella moellendorffii (taxid: 88036)

>sp|D8S069|CSPLI_SELML CASP-like protein SELMODRAFT_416718 OS=Selaginella moellendorffii GN=SELMODRAFT_416718 PE=3 SV=1

 Score =  203 bits (517), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/197 (52%), Positives = 136/197 (69%), Gaps = 16/197 (8%)

Query: 23  IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIK-----EATELGKKARELKKAADTLHQE 77
           +FGGVG+A LPL LIF+F  RPK VITR+QY+K     E T+L K++ EL         E
Sbjct: 2   MFGGVGMATLPLSLIFAFKNRPKCVITRAQYVKVMAWQEVTDLAKRSNELGSPTRRKRLE 61

Query: 78  ERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGI 137
           ER+    +         ++EL+ LE+DV+ L E +PQGEKA+TSWALTVL YLAKLV GI
Sbjct: 62  ERTKVSEKC---EESPADQELVFLEDDVQALNEAFPQGEKADTSWALTVLFYLAKLVFGI 118

Query: 138 LGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAG 197
           LG  +SV W+ HI++++L+NPP  PFLN+VFI+LD  WGLLGT AFA FC+YL+++VI+G
Sbjct: 119 LGLALSVIWLLHIIVFMLVNPPAFPFLNQVFIQLDSAWGLLGTTAFAIFCYYLVMSVISG 178

Query: 198 AMMLGLRLVFITIHPMK 214
            M         +I+PMK
Sbjct: 179 EMH--------SIYPMK 187

Selaginella moellendorffii (taxid: 88036)

>sp|D8S072|CSPLK_SELML CASP-like protein SELMODRAFT_416721 OS=Selaginella moellendorffii GN=SELMODRAFT_416721 PE=3 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 130/187 (69%), Gaps = 22/187 (11%)

Query: 29  IACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWR 88
           +A LP+ L+F+F  RPK VITR+QY+KEAT+L K++ EL             GS  R+  
Sbjct: 1   MATLPVSLVFAFKNRPKCVITRAQYVKEATDLAKRSNEL-------------GSPTRRKD 47

Query: 89  KNVKSVE-KELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWV 147
           ++   +  +EL+ LE+DV+ L E +PQGEKA+TSWA+TVL  LAKLV GILG  +SV W 
Sbjct: 48  ESFGKISIQELVFLEDDVQALNEAFPQGEKADTSWAVTVLFSLAKLVFGILGLALSVIWP 107

Query: 148 AHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVF 207
            HI++++L+NPP  PFLN+VFI+LD  WGLLGT AFA FC+YL+++VI+G M        
Sbjct: 108 LHIIVFMLVNPPAFPFLNQVFIQLDSAWGLLGTTAFAIFCYYLVMSVISGEMH------- 160

Query: 208 ITIHPMK 214
            +IHPMK
Sbjct: 161 -SIHPMK 166

Selaginella moellendorffii (taxid: 88036)

>sp|Q54QP7|Y3707_DICDI LIMR family protein DDB_G0283707 OS=Dictyostelium discoideum GN=DDB_G0283707 PE=3 SV=2

 Score =  185 bits (469), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 103/293 (35%), Positives = 163/293 (55%), Gaps = 14/293 (4%)

Query: 2   RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELG 61
           R +   +++ +    G +LF IFGG+G+  LP  +I  F  RP+  I   +Y++   ++G
Sbjct: 212 RVSIALFIITMVAFFGWLLFIIFGGIGLVALPFDMIGDFKNRPQR-IPYDKYLERKKKIG 270

Query: 62  KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYP-QGEKAET 120
           ++A EL +   T+      G   ++ RKN     + +  LEED + L+  Y  QG K   
Sbjct: 271 ERATELVEIGKTIQSRTSGGIMSKRDRKNYNRFRQAIFLLEEDYERLKISYKRQGGK--- 327

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLG 179
                V+ Y A+   G +   VS+ W+ HI+IY++  P P HPFLN + I L++ WG LG
Sbjct: 328 -----VIFYYAQFFGGFVALGVSLGWLLHIIIYMITAPEPFHPFLNSLVIALNNAWGFLG 382

Query: 180 TAAFAFFCFYLLLAVIAGAMMLGLRLVFI-TIHPMKWGATLMNSFLFNVGLILLCSISVI 238
              +    FYLL  V+ G    GLRL F+  IHPM+ G T+MN+FLFNVGLIL+ S+S+ 
Sbjct: 383 VIVYGLLSFYLLFCVVKGNFKFGLRLFFLFPIHPMRVGNTMMNAFLFNVGLILITSVSIT 442

Query: 239 QFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVY 291
            FC+ AF  +   TA   +F   +++L+ +K+ +   +F +   V+A LT ++
Sbjct: 443 HFCTMAFSQFTSTTAINSLFETAVKNLKILKWFWVVYIFGV--FVMAVLTAIF 493

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
225440692	509	PREDICTED: LIMR family protein At5g01460	1.0	0.609	0.948	1e-171
224140417	509	predicted protein [Populus trichocarpa]	1.0	0.609	0.948	1e-170
224087748	509	predicted protein [Populus trichocarpa]	1.0	0.609	0.941	1e-169
449461773	509	PREDICTED: LIMR family protein At3g08930	1.0	0.609	0.941	1e-168
255574363	509	conserved hypothetical protein [Ricinus	1.0	0.609	0.932	1e-166
297829416	509	hypothetical protein ARALYDRAFT_478196 [	1.0	0.609	0.909	1e-166
15240980	509	LMBR1-like membrane protein [Arabidopsis	1.0	0.609	0.909	1e-165
297810257	509	LMBR1 integral membrane family protein [	1.0	0.609	0.903	1e-165
145338276	509	LMBR1-like membrane protein [Arabidopsis	1.0	0.609	0.903	1e-164
356568088	509	PREDICTED: LIMR family protein At5g01460	1.0	0.609	0.941	1e-160

>gi|225440692|ref|XP_002280330.1| PREDICTED: LIMR family protein At5g01460 [Vitis vinifera] gi|297740207|emb|CBI30389.3| unnamed protein product [Vitis vinifera]

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/310 (94%), Positives = 306/310 (98%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKAR+LKKAAD LHQEERSGSKGRKWRKNVK+VEKELLQLE+DVK LEEMYPQGEKAET
Sbjct: 260 GKKARDLKKAADALHQEERSGSKGRKWRKNVKAVEKELLQLEDDVKALEEMYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGYLAKLVLGILG IVSVAW+AHIVIYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 TWALTVLGYLAKLVLGILGLIVSVAWIAHIVIYLLIDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR 300
           C+TAFGYYAQATAAQEIFGHTLESL+GIKYLYKYNVFQIAF+VLAGLTFVYYAAFGWRRR
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLESLKGIKYLYKYNVFQIAFIVLAGLTFVYYAAFGWRRR 499

Query: 301 KPSGKFQLSS 310
           +PSG+FQLSS
Sbjct: 500 RPSGRFQLSS 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140417|ref|XP_002323579.1| predicted protein [Populus trichocarpa] gi|222868209|gb|EEF05340.1| predicted protein [Populus trichocarpa]

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 294/310 (94%), Positives = 305/310 (98%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MR TFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRATFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDVKLLEE+YPQGEKAET
Sbjct: 260 GKKARELKKAADVLHQEERSGNKGRKWRKNVKAVEKELLQLEEDVKLLEEVYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           SWALTVLGYLAKLVLGILG IVSVAWVAHI+IYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 SWALTVLGYLAKLVLGILGLIVSVAWVAHIIIYLLIDPPLSPFLNEVFIKLDDIWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
            AFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 VAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR 300
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRR+
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRK 499

Query: 301 KPSGKFQLSS 310
           KPSG+FQLSS
Sbjct: 500 KPSGRFQLSS 509

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087748|ref|XP_002308217.1| predicted protein [Populus trichocarpa] gi|222854193|gb|EEE91740.1| predicted protein [Populus trichocarpa]

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 292/310 (94%), Positives = 303/310 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MR TFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATE 
Sbjct: 200 MRATFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEF 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET
Sbjct: 260 GKKARELKKAADALHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGYLAKLVLGILG IVSVAWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWALTVLGYLAKLVLGILGLIVSVAWVAHIIIYLLVDPPLSPFLNEVFIKLDDIWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
            AFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 VAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR 300
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI+FVVLAGLTFVYYAAFGWRR+
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQISFVVLAGLTFVYYAAFGWRRK 499

Query: 301 KPSGKFQLSS 310
           K SG+FQLSS
Sbjct: 500 KRSGRFQLSS 509

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461773|ref|XP_004148616.1| PREDICTED: LIMR family protein At3g08930-like [Cucumis sativus] gi|449522716|ref|XP_004168372.1| PREDICTED: LIMR family protein At3g08930-like [Cucumis sativus]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 292/310 (94%), Positives = 303/310 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSGSKGRKWRKNVK+VEKELLQLEEDVKLLEEMYPQGEKAET
Sbjct: 260 GKKARELKKAADGLHQEERSGSKGRKWRKNVKAVEKELLQLEEDVKLLEEMYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGYLAKLVLG+LG IVSVAWV HIVIYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWALTVLGYLAKLVLGVLGLIVSVAWVVHIVIYLLIDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR 300
           CSTAF YYA+ATAAQEIFGHTL+SLRGIKYLYKYNVFQIAF+ LAGLTFVYYAAFGWRR+
Sbjct: 440 CSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAGLTFVYYAAFGWRRK 499

Query: 301 KPSGKFQLSS 310
           K SG+FQLSS
Sbjct: 500 KLSGRFQLSS 509

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574363|ref|XP_002528095.1| conserved hypothetical protein [Ricinus communis] gi|223532484|gb|EEF34274.1| conserved hypothetical protein [Ricinus communis]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 289/310 (93%), Positives = 300/310 (96%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSGSKGRKWRKNVK+VEKEL QLEEDVKLLEEMYPQGEKAET
Sbjct: 260 GKKARELKKAADALHQEERSGSKGRKWRKNVKAVEKELFQLEEDVKLLEEMYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           SWALTVLGYLAKLVLGILG IVSVAWVAHIVIYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 SWALTVLGYLAKLVLGILGLIVSVAWVAHIVIYLLISPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
            AFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWG TLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 VAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGGTLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR 300
           CSTAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQ AF+VLA +T + YAAFGWRR+
Sbjct: 440 CSTAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQYAFIVLAVVTLLLYAAFGWRRK 499

Query: 301 KPSGKFQLSS 310
           KP+G+FQLSS
Sbjct: 500 KPTGRFQLSS 509

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829416|ref|XP_002882590.1| hypothetical protein ARALYDRAFT_478196 [Arabidopsis lyrata subsp. lyrata] gi|297328430|gb|EFH58849.1| hypothetical protein ARALYDRAFT_478196 [Arabidopsis lyrata subsp. lyrata]

 Score =  588 bits (1517), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 282/310 (90%), Positives = 301/310 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARELKKAADGLHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK +LGILG IVS+AWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFILGILGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR 300
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FV+LAGLTF+YY AFGWRR+
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVILAGLTFLYYIAFGWRRK 499

Query: 301 KPSGKFQLSS 310
           KPSG+FQLSS
Sbjct: 500 KPSGRFQLSS 509

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240980|ref|NP_195766.1| LMBR1-like membrane protein [Arabidopsis thaliana] gi|75181394|sp|Q9M028.1|LMBD2_ARATH RecName: Full=LIMR family protein At5g01460 gi|7320724|emb|CAB81929.1| putative protein [Arabidopsis thaliana] gi|18176296|gb|AAL60018.1| unknown protein [Arabidopsis thaliana] gi|20465353|gb|AAM20080.1| unknown protein [Arabidopsis thaliana] gi|332002964|gb|AED90347.1| LMBR1-like membrane protein [Arabidopsis thaliana]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 282/310 (90%), Positives = 301/310 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKAR+LKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARDLKKAADALHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK VLGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR 300
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FVVLAGLTF+YY AFGWRR+
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVVLAGLTFLYYIAFGWRRK 499

Query: 301 KPSGKFQLSS 310
           KPSG+FQLS+
Sbjct: 500 KPSGRFQLST 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810257|ref|XP_002873012.1| LMBR1 integral membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297318849|gb|EFH49271.1| LMBR1 integral membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 280/310 (90%), Positives = 301/310 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKAR+LKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARDLKKAADALHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK +LGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFILGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLL+VIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLSVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR 300
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FVVLAGLTF+YY AFGWRR+
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVVLAGLTFLYYIAFGWRRK 499

Query: 301 KPSGKFQLSS 310
           KPSG+FQLS+
Sbjct: 500 KPSGRFQLST 509

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338276|ref|NP_566338.2| LMBR1-like membrane protein [Arabidopsis thaliana] gi|226789815|sp|Q9SR93.2|LMBD1_ARATH RecName: Full=LIMR family protein At3g08930 gi|14334836|gb|AAK59596.1| unknown protein [Arabidopsis thaliana] gi|24417362|gb|AAN60291.1| unknown [Arabidopsis thaliana] gi|56550703|gb|AAV97805.1| At3g08930 [Arabidopsis thaliana] gi|332641175|gb|AEE74696.1| LMBR1-like membrane protein [Arabidopsis thaliana]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 280/310 (90%), Positives = 300/310 (96%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARELKKAADGLHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK +LGI+G IVS+AWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR 300
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FV+LAGLTF+YY AFGWRR+
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVILAGLTFLYYIAFGWRRK 499

Query: 301 KPSGKFQLSS 310
           K SG+FQLSS
Sbjct: 500 KTSGRFQLSS 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568088|ref|XP_003552245.1| PREDICTED: LIMR family protein At5g01460-like [Glycine max]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/310 (94%), Positives = 303/310 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAA+ LHQEERSGSKGRK+RKNVK VEKEL QLEEDVKLLEE+YPQGEKAET
Sbjct: 260 GKKARELKKAAEALHQEERSGSKGRKFRKNVKEVEKELFQLEEDVKLLEEVYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGYLAK VLGILG IVSVAWVAHI+IYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 TWALTVLGYLAKFVLGILGLIVSVAWVAHIIIYLLIDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR 300
           CSTAF YYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRR+
Sbjct: 440 CSTAFAYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRK 499

Query: 301 KPSGKFQLSS 310
           KPSG+FQLS+
Sbjct: 500 KPSGRFQLST 509

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:2179197	509	AT5G01460 [Arabidopsis thalian	1.0	0.609	0.867	3.3e-143
TAIR|locus:2097618	509	AT3G08930 [Arabidopsis thalian	1.0	0.609	0.861	2.9e-142
DICTYBASE|DDB_G0283707	507	DDB_G0283707 "LMBR1-like conse	0.9	0.550	0.341	1.9e-42
DICTYBASE|DDB_G0293610	507	DDB_G0293610 "LMBR1-like conse	0.903	0.552	0.329	1.4e-41

TAIR|locus:2179197 AT5G01460 [Arabidopsis thaliana (taxid:3702)]

 Score = 1400 (497.9 bits), Expect = 3.3e-143, P = 3.3e-143
 Identities = 269/310 (86%), Positives = 288/310 (92%)

Query:     1 MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
             MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct:   200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query:    61 GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
             GKKAR+LKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct:   260 GKKARDLKKAADALHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
             +WA TVLGYLAK VLGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct:   320 AWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query:   181 XXXXXXXXXXXXXVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
                          VIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct:   380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query:   241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR 300
             C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FVVLAGLTF+YY AFGWRR+
Sbjct:   440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVVLAGLTFLYYIAFGWRRK 499

Query:   301 KPSGKFQLSS 310
             KPSG+FQLS+
Sbjct:   500 KPSGRFQLST 509

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2097618 AT3G08930 [Arabidopsis thaliana (taxid:3702)]

 Score = 1391 (494.7 bits), Expect = 2.9e-142, P = 2.9e-142
 Identities = 267/310 (86%), Positives = 287/310 (92%)

Query:     1 MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
             MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct:   200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query:    61 GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
             GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct:   260 GKKARELKKAADGLHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
             +WA TVLGYLAK +LGI+G IVS+AWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct:   320 AWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query:   181 XXXXXXXXXXXXXVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
                          VIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct:   380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query:   241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRR 300
             C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FV+LAGLTF+YY AFGWRR+
Sbjct:   440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVILAGLTFLYYIAFGWRRK 499

Query:   301 KPSGKFQLSS 310
             K SG+FQLSS
Sbjct:   500 KTSGRFQLSS 509

GO:0005576 "extracellular region" evidence=ISM

GO:0009506 "plasmodesma" evidence=IDA

GO:0007033 "vacuole organization" evidence=RCA

DICTYBASE|DDB_G0283707 DDB_G0283707 "LMBR1-like conserved region-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 100/293 (34%), Positives = 159/293 (54%)

Query:     2 RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELG 61
             R +   +++ +    G +LF IFGG+G+  LP  +I  F  RP+  I   +Y++   ++G
Sbjct:   212 RVSIALFIITMVAFFGWLLFIIFGGIGLVALPFDMIGDFKNRPQR-IPYDKYLERKKKIG 270

Query:    62 KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYP-QGEKAET 120
             ++A EL +   T+      G   ++ RKN     + +  LEED + L+  Y  QG K   
Sbjct:   271 ERATELVEIGKTIQSRTSGGIMSKRDRKNYNRFRQAIFLLEEDYERLKISYKRQGGK--- 327

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLG 179
                  V+ Y A+   G +   VS+ W+ HI+IY++  P P HPFLN + I L++ WG LG
Sbjct:   328 -----VIFYYAQFFGGFVALGVSLGWLLHIIIYMITAPEPFHPFLNSLVIALNNAWGFLG 382

Query:   180 TXXXXXXXXXXXXXVIAGAMMLGLRLVFI-TIHPMKWGATLMNSFLFNVGLILLCSISVI 238
                           V+ G    GLRL F+  IHPM+ G T+MN+FLFNVGLIL+ S+S+ 
Sbjct:   383 VIVYGLLSFYLLFCVVKGNFKFGLRLFFLFPIHPMRVGNTMMNAFLFNVGLILITSVSIT 442

Query:   239 QFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVY 291
              FC+ AF  +   TA   +F   +++L+ +K+ +   +F + FV +A LT ++
Sbjct:   443 HFCTMAFSQFTSTTAINSLFETAVKNLKILKWFWVVYIFGV-FV-MAVLTAIF 493

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

DICTYBASE|DDB_G0293610 DDB_G0293610 "LMBR1-like conserved region-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 97/294 (32%), Positives = 157/294 (53%)

Query:     2 RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELG 61
             R +   +++ +    G +LF IFGG+G+  LP  +I  F  RP+  I   +Y++   ++G
Sbjct:   212 RVSIALFIITMVAFFGWLLFIIFGGIGLVALPFDMITDFKNRPQR-IPYDKYLERKKKIG 270

Query:    62 KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYP-QGEKAET 120
             ++A EL     T+      G   ++ R+N     + +  LEED + L+  Y  QG K   
Sbjct:   271 ERATELVDVGKTIQSRTTGGIMSKRDRRNYNRFRQAIFLLEEDYERLKISYKRQGGK--- 327

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLG 179
                  V+ Y A+   G +   VS+ W+ HI+IY++  P P HPFLN + I L++ WG LG
Sbjct:   328 -----VILYYAQFFGGFIALGVSLGWLLHIIIYMITAPEPFHPFLNSLVISLNNAWGFLG 382

Query:   180 TXXXXXXXXXXXXXVIAGAMMLGLRLVFI-TIHPMKWGATLMNSFLFNVGLILLCSISVI 238
                           V+ G    GLRL F+  IHPM+ G T+MN+FLFNVGLIL+ S+S+ 
Sbjct:   383 VIVYGLLSFYLLFCVVKGNFKFGLRLFFLFPIHPMRVGNTMMNAFLFNVGLILITSVSIT 442

Query:   239 QFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQI-AFVVLAGLTFVY 291
              FC+ AF  +   T+   +F   +++L+ +K+ +   +F I A  +L  + F++
Sbjct:   443 HFCTMAFSQFTSTTSINSLFETAVKNLKILKWFWVVYIFAIFAMSILTAI-FLF 495


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.141   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      310       297   0.00093  115 3  11 22  0.44    33
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  200 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.39u 0.13s 28.52t   Elapsed:  00:00:01
  Total cpu time:  28.39u 0.13s 28.52t   Elapsed:  00:00:01
  Start:  Mon May 20 21:44:20 2013   End:  Mon May 20 21:44:21 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M028	LMBD2_ARATH	No assigned EC number	0.9096	1.0	0.6090	yes	no
Q9SR93	LMBD1_ARATH	No assigned EC number	0.9032	1.0	0.6090	yes	no
Q658I5	LMBD1_ORYSJ	No assigned EC number	0.8322	1.0	0.6078	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021508001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (509 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
pfam04791	419	pfam04791, LMBR1, LMBR1-like membrane protein	8e-52
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	6e-04

>gnl|CDD|218267 pfam04791, LMBR1, LMBR1-like membrane protein

 Score =  175 bits (445), Expect = 8e-52
 Identities = 65/317 (20%), Positives = 98/317 (30%), Gaps = 78/317 (24%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIR------------------ 42
           +   F  YV + ++  G +L  I  G G+  LP  L    +R                  
Sbjct: 153 LWENFLPYVYSCSSFWGLLLLLILTGYGLVRLPSSLWKLLVRYFRAAKLEREKVEAESKV 212

Query: 43  ----------RPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVK 92
                              Q  K ATELGK  REL  +A                     
Sbjct: 213 DDILESVSLLPRLLEDVNEQRSKSATELGKLTRELNLSAICRSL---------------- 256

Query: 93  SVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVI 152
                                           T+L      +LG++   +S+  V   + 
Sbjct: 257 -------------------------VYPLAMYTLLVLTFCSILGVVTNTLSLLVVESELP 291

Query: 153 YLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHP 212
           +   +     FLN + I     +GL G A      FYL+ +   G   L     F+  + 
Sbjct: 292 FFTRD-----FLNVIGIASFSKFGLFGAAVEFLLIFYLMYSSYVGFYSLP----FLRYYR 342

Query: 213 MKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLY 272
            K   T M   + N G +L  S   +        ++    +  EIFG  L SL  +   Y
Sbjct: 343 PKPHDTTMTQSIINSGSLLCRSALPVCSNFLGLTHFDLLGSFGEIFGLDLISLIWLGNFY 402

Query: 273 KYNVFQIAFVVLAGLTF 289
              ++ I FV+L GL  
Sbjct: 403 YVLLYNILFVILTGLRL 419

Members of this family are integral membrane proteins that are around 500 residues in length. LMBR1 is not involved in preaxial polydactyly, as originally thought. Vertebrate members of this family may play a role in limb development. A member of this family has been shown to be a lipocalin membrane receptor. Length = 419

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 51  SQYIKEATELGKKARELKKAADTLHQE-ERSGSKGRKWRKNVKSVEKELLQLEEDVKLLE 109
            +Y +E  +L ++A EL+K AD LH+E      K  +  +  ++++ EL +LE+ +K L 
Sbjct: 189 QEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR 248

Query: 110 EMYPQGEKAE 119
                 ++ E
Sbjct: 249 AKEKAAKRRE 258

Length = 294

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
PF04791	471	LMBR1: LMBR1-like membrane protein; InterPro: IPR0	99.96
KOG2296	673	consensus Integral membrane protein [General funct	97.85
KOG3722	538	consensus Lipocalin-interacting membrane receptor	97.33
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.08
COG1422	201	Predicted membrane protein [Function unknown]	93.89
PF04420	161	CHD5: CHD5-like protein; InterPro: IPR007514 Membe	91.05
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	88.26
PF00664	275	ABC_membrane: ABC transporter transmembrane region	87.45
TIGR02976	75	phageshock_pspB phage shock protein B. This model	83.37
PF01277	118	Oleosin: Oleosin; InterPro: IPR000136 Oleosins []	83.28
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	82.26

>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor

Probab=99.96  E-value=9.8e-29  Score=246.06  Aligned_cols=272  Identities=25%  Similarity=0.372  Sum_probs=194.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCccccChHHHHHHHHHHHHHHHHHHHHH-----------
Q 021594            3 TTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAA-----------   71 (310)
Q Consensus         3 vsf~~f~i~~l~~iG~~lfv~y~gvGlaalPi~lI~~f~~Rpk~~is~~e~~~~~~~i~~~a~~Lle~~-----------   71 (310)
                      .++..|++|+..+.|++++++|+|+||+++|.++++++.+..+..-..+|..+.+.++++..+++.+..           
T Consensus       155 ~~~~~~~ial~~~~Gl~l~i~~~g~Glv~iP~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  234 (471)
T PF04791_consen  155 SSLLPFLIALSNFWGLFLFIILLGYGLVAIPRDLWRSSNSYFRAAKLEDEAAEAKEKLDDIIEKLRRLRRILRDVEELRS  234 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhccccchhhhhcchhHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Confidence            467889999999999999999999999999999999998711110111111222222222222221111           


Q ss_pred             ----------HHHHHhhhc-------CCCChhhhHHHHHHHHHHHHHHHHHHHHHhhcccCcc--------------chh
Q 021594           72 ----------DTLHQEERS-------GSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEK--------------AET  120 (310)
Q Consensus        72 ----------~~lq~~~~~-------g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~y~~~~~--------------~~~  120 (310)
                                +++++..++       ++.++++++..+..++....++++.+.+++.|++.+.              -++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  314 (471)
T PF04791_consen  235 ELDTILNELPKEIQELIESSNQEERSTNLGRSWRKILDSENKLLLLLKRDLKSLQRLYRREEQWKTLVLSRFFRNLRFQW  314 (471)
T ss_pred             HHHHHHHhhHHHHHHHHhccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHH
Confidence                      111110000       1112222222333344444444444444433332211              111


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021594          121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMM  200 (310)
Q Consensus       121 ~~~~~vl~~~~kLl~Gii~lllSi~w~i~iil~~i~~~~~~~~LN~~fi~l~~~fpl~~~i~~~~~~~Yll~csi~G~~~  200 (310)
                      .|. ..++|+.+.++|+++.++|++|..|-+.....+     +++.+++..++.++.++.++.+++++|+.+|+.+|+.+
T Consensus       315 ~~~-~~l~~~~~~il~Vi~~ilSlli~~sEl~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~l~Ym~~ct~~glf~  388 (471)
T PF04791_consen  315 IWY-CYLRPYVYKILAVIFAILSLLIVWSELTFFFRS-----FLFSIFISSDSKFGFLGQLLSFLFLFYMCFCTYYGLFK  388 (471)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhHHhh
Confidence            223 678999999999999999999999998777766     89999999999998889999999999999999999999


Q ss_pred             HhhHhhheeeeecccCCCchhhHHHHHHHHHHHHHHHHHHhhhhhHhhHHHhHHHHHHHHHhcccccceeeeehhhHHHH
Q 021594          201 LGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIA  280 (310)
Q Consensus       201 ~GiRf~~~~i~pmr~~~T~~nslLfn~~Llll~s~av~qFc~~~f~~ya~~t~i~~~f~~~~~nl~~~~~~~~~nv~~y~  280 (310)
                      +|+    +++|+|+||+|.+++.|+|+++++..+.+..+|+..++..|+..|+.+++  .++.++.+.|+++.+++++++
T Consensus       389 ~~~----f~~y~l~p~~ts~~~sL~f~a~~l~Rl~~PL~fNfl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  462 (471)
T PF04791_consen  389 LKI----FRFYPLVPHHTSDNSSLFFSAIYLCRLAPPLCFNFLGMIRYDSTTSFNNI--VQIQSLLGLGFFYYFPIFILL  462 (471)
T ss_pred             hhh----heeccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc--cccccceecchHHHHHHHHHH
Confidence            997    99999999999999999999999999999999999999999999999887  666789999998877666666


Q ss_pred             HHHHHH
Q 021594          281 FVVLAG  286 (310)
Q Consensus       281 ~l~~~~  286 (310)
                      +.+...
T Consensus       463 ~~~~t~  468 (471)
T PF04791_consen  463 FCILTY  468 (471)
T ss_pred             HHHHHH
Confidence            555443

LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].

>KOG2296 consensus Integral membrane protein [General function prediction only]

Probab=97.85  E-value=0.0058  Score=63.30  Aligned_cols=108  Identities=17%  Similarity=0.091  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 021594          126 VLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRL  205 (310)
Q Consensus       126 vl~~~~kLl~Gii~lllSi~w~i~iil~~i~~~~~~~~LN~~fi~l~~~fpl~~~i~~~~~~~Yll~csi~G~~~~GiRf  205 (310)
                      .+.+.++.+++++-.+.|.+++++=.-.-..++.+.++.+-+..+.++..=+  ++.-.++..|+..|+.+-.++++++ 
T Consensus       358 ~l~~~f~~~~~i~~~~Ms~~Vl~sE~tf~~~~~~Lsl~a~vi~~~~~~~~~i--~~~af~~l~Y~~~ctY~sl~r~~~~-  434 (673)
T KOG2296|consen  358 ILKKPFQMVLAIVMAIMSAAILLSEATFLLSKYDLSLFAIVISSAKSDELTV--QFVAFVPLVYMCYCTYYSLFRIQFL-  434 (673)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHhhheeeeccchHHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3444588999999999998888887666666777788888888888865443  5666677889999999999999987 


Q ss_pred             hheeeeecccC-CCchhhHHHHHHHHHHHHHHHHH
Q 021594          206 VFITIHPMKWG-ATLMNSFLFNVGLILLCSISVIQ  239 (310)
Q Consensus       206 ~~~~i~pmr~~-~T~~nslLfn~~Llll~s~av~q  239 (310)
                         ..|-+-|+ +|--+|+||-++|+.=.+.++++
T Consensus       435 ---~yY~L~P~~qTn~~SLlfs~~llCRLTPPiCl  466 (673)
T KOG2296|consen  435 ---MYYSLTPRRQTNEVSLLFSASLLCRLTPPICL  466 (673)
T ss_pred             ---HhheeccccccchHHHHHHHHHHHhcCchhhh
Confidence               78888888 99999999999999888888876

>KOG3722 consensus Lipocalin-interacting membrane receptor (LIMR) [Defense mechanisms]

Probab=97.33  E-value=0.0022  Score=63.75  Aligned_cols=138  Identities=22%  Similarity=0.264  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHH---
Q 021594           91 VKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEV---  167 (310)
Q Consensus        91 l~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~vl~~~~kLl~Gii~lllSi~w~i~iil~~i~~~~~~~~LN~~---  167 (310)
                      ++.++++++.++.+-..+++.  +..+   +|-. -++++...++=.++.-+|++.++.-++.-+.+...-|---+-   
T Consensus       311 ~~~l~~~~~e~~~qr~~l~~r--rt~S---a~eR-nlvyP~am~lLLv~T~~SvLlVa~NtL~LLi~e~AlP~~trg~~i  384 (538)
T KOG3722|consen  311 YRELKEYVKELRTQRSSLEKR--RTAS---AWER-NLVYPLAMLLLLVLTTCSVLLVATNTLELLIGERALPVYTQGFAI  384 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh--hhhH---HHHH-hhhhHHHHHHHHHHhhhHHHHHHHhHHHHHhCcccCccccccccc
Confidence            445555555555555555553  2211   3443 445558888888888999999998888888764332222211   


Q ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhhheeeeecccCCCchhhHHHHHHHHHHHHHHHH
Q 021594          168 FIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVI  238 (310)
Q Consensus       168 fi~l~~~fpl~~~i~~~~~~~Yll~csi~G~~~~GiRf~~~~i~pmr~~~T~~nslLfn~~Llll~s~av~  238 (310)
                      =+..-+-|.++|..+=.++++|++.+|++|--.+    .+++=..=|+++|.|--..-||+.++..|.|+=
T Consensus       385 g~~Sls~fG~fGA~lEv~LIfYlmvtSvVGfYSl----pffr~~~Pkr~dTtM~qIIgNcv~iLVlSSALP  451 (538)
T KOG3722|consen  385 GVHSLSKFGLFGACIEVLLIFYLMVTSVVGFYSL----PFFRSLRPKRDDTTMPQIIGNCVSILVLSSALP  451 (538)
T ss_pred             cceehhhccchHHHHHHHHHHHHHHHHHhhhhcc----hhhhccCcCccCCccchHhhhceeeeeeccccH
Confidence            1222346777899999999999999999996554    355555557788888889999999988877653

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=94.08  E-value=0.85  Score=40.30  Aligned_cols=20  Identities=35%  Similarity=0.705  Sum_probs=13.5

Q ss_pred             hhhhhhhHHHHhhcccCCcc
Q 021594           27 VGIACLPLGLIFSFIRRPKA   46 (310)
Q Consensus        27 vGlaalPi~lI~~f~~Rpk~   46 (310)
                      +|++.++.++..-...+|.+
T Consensus        48 lg~vL~~~g~~~~~~~~~~~   67 (191)
T PF04156_consen   48 LGVVLLSLGLLCLLSKRPVQ   67 (191)
T ss_pred             HHHHHHHHHHHHHHHccccc
Confidence            46666777777666677765

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG1422 Predicted membrane protein [Function unknown]

Probab=93.89  E-value=1.8  Score=39.63  Aligned_cols=46  Identities=22%  Similarity=0.357  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594           65 RELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM  111 (310)
Q Consensus        65 ~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~  111 (310)
                      +++.++.+|.|++.++..+ ++|-.+++++|++..+..++++++-..
T Consensus        75 ~~~qk~m~efq~e~~eA~~-~~d~~~lkkLq~~qmem~~~Q~elmk~  120 (201)
T COG1422          75 KELQKMMKEFQKEFREAQE-SGDMKKLKKLQEKQMEMMDDQRELMKM  120 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444332221 347779999999999999999998876

>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein

Probab=91.05  E-value=0.89  Score=39.87  Aligned_cols=73  Identities=12%  Similarity=0.156  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-ChhHHHHH
Q 021594           91 VKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLH-PFLNEVFI  169 (310)
Q Consensus        91 l~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~vl~~~~kLl~Gii~lllSi~w~i~iil~~i~~~~~~-~~LN~~fi  169 (310)
                      .-+++|+..++++|.+.++++.......    ....+.....++.+....++ ..|.=.--++.+++. .+ .|+++++-
T Consensus        68 waKl~Rk~~kl~~el~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l-~~~~rk~pV~~lp~~-~~p~p~~~lLS  141 (161)
T PF04420_consen   68 WAKLNRKLDKLEEELEKLNKSLSSEKSS----FDKSLSKVLWVLTTLPFFVL-RFWYRKTPVFYLPKG-WFPWPFEWLLS  141 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHH----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhh-heeecCceEEEECch-hhHHHHHHhee
Confidence            3356666666666666666652222221    11344443333333333333 334444455566643 44 77787765

The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=88.26  E-value=4.3  Score=36.11  Aligned_cols=19  Identities=16%  Similarity=0.308  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 021594            6 PEYVVALATIVGSVLFSIF   24 (310)
Q Consensus         6 ~~f~i~~l~~iG~~lfv~y   24 (310)
                      +.|+.|+..++++++.-++
T Consensus       103 N~YIsGf~LfL~l~I~r~~  121 (192)
T PF05529_consen  103 NMYISGFALFLSLVIRRVH  121 (192)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            3688888888888877665

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=87.45  E-value=18  Score=31.24  Aligned_cols=18  Identities=17%  Similarity=0.336  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 021594            8 YVVALATIVGSVLFSIFG   25 (310)
Q Consensus         8 f~i~~l~~iG~~lfv~y~   25 (310)
                      .+..+...++.+.+.++.
T Consensus       122 ~~~~~~~~i~~~~~~~~~  139 (275)
T PF00664_consen  122 IISSIISIIFSLILLFFI  139 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhccccc
Confidence            344444555555555443

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.

>TIGR02976 phageshock_pspB phage shock protein B

Probab=83.37  E-value=6.2  Score=30.64  Aligned_cols=29  Identities=17%  Similarity=0.173  Sum_probs=19.0

Q ss_pred             CChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594           83 KGRKWRKNVKSVEKELLQLEEDVKLLEEM  111 (310)
Q Consensus        83 ~~~k~rr~l~~l~~~~~~Le~~~~~le~~  111 (310)
                      .+..|.++++++-+.-+.|++|.+.||.-
T Consensus        36 ls~~d~~~L~~L~~~a~rm~eRI~tLE~I   64 (75)
T TIGR02976        36 LSTDDQALLQELYAKADRLEERIDTLERI   64 (75)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666777777776665

This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.

>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies

Probab=83.28  E-value=8.8  Score=32.36  Aligned_cols=56  Identities=16%  Similarity=0.255  Sum_probs=41.7

Q ss_pred             HHHHHHHhhhhhhhhh-HHHHhhcccCCccccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594           18 SVLFSIFGGVGIACLP-LGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTL   74 (310)
Q Consensus        18 ~~lfv~y~gvGlaalP-i~lI~~f~~Rpk~~is~~e~~~~~~~i~~~a~~Lle~~~~l   74 (310)
                      .--|..-|+.|++++- ++++..+.++.++ -..+|..+.|.++++.++.+-|++||.
T Consensus        58 ~~Gfl~sg~~g~~~ls~lsW~~~y~rg~~~-~~~~q~d~Ak~ri~d~a~~v~~kake~  114 (118)
T PF01277_consen   58 VAGFLTSGAFGLTALSSLSWMYNYFRGRHP-PGPDQLDYAKRRIADTASYVGQKAKEV  114 (118)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhccCCC-CCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence            3335555666666554 5778888887777 788888888889999998888888775

Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=82.26  E-value=21  Score=27.64  Aligned_cols=25  Identities=12%  Similarity=0.154  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594           52 QYIKEATELGKKARELKKAADTLHQ   76 (310)
Q Consensus        52 e~~~~~~~i~~~a~~Lle~~~~lq~   76 (310)
                      |..+.+....+-.++++|.|+.++.
T Consensus        11 ~v~~v~~im~~Ni~~ll~Rge~L~~   35 (89)
T PF00957_consen   11 QVEEVKNIMRENIDKLLERGEKLEE   35 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCchHHH
Confidence            4445555555556666666655554

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 55  KEATELGKKARELKKAADTLH-QEERSGSKGRKWRKNVKSVEKELL-QLEEDV 105
            +A     +    +KA   L    +R   +  K + N +  +K    Q + D+
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 13/57 (22%)

Query: 70  AADTLHQEERSGSKGRKWRKNVKSVEKELLQLEE-DV---KLLEEMYPQGEKAETSW 122
            AD L QE  S    RKWR      E++  +L+E D     + +E   + +K    W
Sbjct: 76  QADRLTQEPESI---RKWR------EEQRKRLQELDAASKVMEQEWREKAKKDLEEW 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 73/314 (23%)

Query: 20  LFSIFGGVGIACLP----------LGLIFSFIRRPKAVITRSQYIKEATELGKKARELKK 69
           L   +       LP          L +I   IR   A        K      K    ++ 
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA---TWDNWKH-VNCDKLTTIIES 361

Query: 70  AADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVK----LLEEMYPQGEKAETSWALT 125
           + + L   E             + +   L            LL  ++    K++      
Sbjct: 362 SLNVLEPAE------------YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM---V 406

Query: 126 VLGYLAKLVL---GILGFIVSVAWVAHIVIYLLINPP------LH-PFLNEV-FIKLDDL 174
           V+  L K  L         +S+       IYL +         LH   ++     K  D 
Sbjct: 407 VVNKLHKYSLVEKQPKESTISI----P-SIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 175 WGLLGTAAFAFFCFYL---LLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLIL 231
             L+      +F  ++   L  +     M   R+VF+      +    +   + +     
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---F----LEQKIRHDSTAW 514

Query: 232 LCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKY----------NVFQIAF 281
             S S++        Y          +   + ++  + +L K           ++ +IA 
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--LDFLPKIEENLICSKYTDLLRIAL 572

Query: 282 VVLAGLTFVYYAAF 295
             +A    ++  A 
Sbjct: 573 --MAEDEAIFEEAH 584

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	87.23
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	82.67

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=87.23  E-value=0.85  Score=32.01  Aligned_cols=44  Identities=14%  Similarity=0.182  Sum_probs=25.5

Q ss_pred             hHHHHhhccc--CCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021594           33 PLGLIFSFIR--RPKAVITRSQYIKEATELGKKARELKKAADTLHQE   77 (310)
Q Consensus        33 Pi~lI~~f~~--Rpk~~is~~e~~~~~~~i~~~a~~Lle~~~~lq~~   77 (310)
                      |+|+|+...+  -|.. .+.+.+..+..++..|.++|.++.++++++
T Consensus         3 AlefIk~~LG~~~p~~-~d~eaLk~E~~eLk~k~~~L~~~~~el~~~   48 (53)
T 2yy0_A            3 ALDFLKHHLGAATPEN-PEIELLRLELAEMKEKYEAIVEENKKLKAK   48 (53)
T ss_dssp             -------------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999988  7766 666667778888888888888888888764

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=82.67  E-value=5.5  Score=28.58  Aligned_cols=38  Identities=32%  Similarity=0.467  Sum_probs=25.2

Q ss_pred             hHHHHhhcccCCccccChHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 021594           33 PLGLIFSFIRRPKAVITRSQYIKEATELG---KKARELKKAADTLHQE   77 (310)
Q Consensus        33 Pi~lI~~f~~Rpk~~is~~e~~~~~~~i~---~~a~~Lle~~~~lq~~   77 (310)
                      |+|+--+      | |+-.||-|-|+.++   .|.++|++.+..+.++
T Consensus         2 ~~dlsDg------p-it~qeylevK~ALaaSeAkiQQLmkVN~~ls~E   42 (63)
T 2w6a_A            2 PLGSSDG------A-VTLQEYLELKKALATSEAKVQQLMKVNSSLSDE   42 (63)
T ss_dssp             CCC--CC------S-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCC------c-chHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHH
Confidence            5566555      4 89999988665553   4677888888777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	88.38

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.38  E-value=4.9  Score=32.61  Aligned_cols=16  Identities=6%  Similarity=0.289  Sum_probs=7.6

Q ss_pred             hhhhhhhhHHHHhhcc
Q 021594           26 GVGIACLPLGLIFSFI   41 (310)
Q Consensus        26 gvGlaalPi~lI~~f~   41 (310)
                      .+.++..|+-.+-...
T Consensus       165 li~l~~~~~~~~~~~~  180 (323)
T d2hyda2         165 LAALFIFPFYILTVYV  180 (323)
T ss_dssp             HHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            3444455555554443