Citrus Sinensis ID: 021595

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
MRIFAKYNCKLAYTTSVYPMSSCINPSTLATSVNGFKCLPLPTNRAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNILHNNYNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGFICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEELKDVSRW
ccccccccccccccEEEccccccccccccccccccccccccccccHHHHcccccccEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccc
cEEEEEEEEEEEEEEEEEccHccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccHHHHHHcccccccEcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHccccHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
mrifakyncklayttsvypmsscinpstlatsvngfkclplptNRAAIRIMAknkpvqclvsakydnltvdrrsanyqpsiwdhdflqslnsnytdETYKRRAEELKGKVMTTIKdvtepldqLELIDNLQRLGLAYHFETEIRNILHnnynnnkdynwrkenLYATSLEFRLLrqhgypvsqdvfngfkddkggficndFKGIISLHeasyyslegesIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQTKRAlelpllwkvpmleaRWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEELKDVSRW
mrifakyncKLAYTTSVYPMSSCINPSTLATSVNGFKCLPLPTNRAAIRIMAKNKPVQCLVSAKYDNLTVDRRSanyqpsiwdhdflqslnsnYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNILhnnynnnkdynWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGFICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQTKRAlelpllwkvpmlEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQeelkdvsrw
MRIFAKYNCKLAYTTSVYPMSSCINPSTLATSVNGFKCLPLPTNRAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNILHnnynnnkdynWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGFICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEELKDVSRW
**IFAKYNCKLAYTTSVYPMSSCINPSTLATSVNGFKCLPLPTNRAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNILHNNYNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGFICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQE********
***************************************************************************NYQPSIWDHDFLQSLNSN****TYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNILHNNYNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGFICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVM********VFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEELKDVSRW
MRIFAKYNCKLAYTTSVYPMSSCINPSTLATSVNGFKCLPLPTNRAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNILHNNYNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGFICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEELKDVSRW
MRIFAKYNCKLAYTTSVYPMSSCINPSTL****NGFKCL*******AIRI*A*NKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNILHNNYNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGFICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEELKDVSRW
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
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MRIFAKYNCKLAYTTSVYPMSSCINPSTLATSVNGFKCLPLPTNRAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNILHNNYNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGFICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEELKDVSRW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query310 2.2.26 [Sep-21-2011]
Q8L5K3 606 (R)-limonene synthase 1 O N/A no 0.938 0.480 0.883 1e-146
Q6PWU2 590 (-)-alpha-terpineol synth yes no 0.761 0.4 0.555 2e-72
Q93X23 597 Myrcene synthase, chlorop N/A no 0.816 0.423 0.517 1e-71
B3TPQ7 592 Alpha-terpineol synthase, N/A no 0.906 0.474 0.451 4e-63
Q2XSC4 538 Exo-alpha-bergamotene syn N/A no 0.754 0.434 0.5 5e-62
A7IZZ2 615 (+)-alpha-pinene synthase N/A no 0.822 0.414 0.482 1e-61
Q6EJ97 608 Isoprene synthase, chloro N/A no 0.816 0.416 0.479 1e-57
Q5SBP4 541 Alpha-zingiberene synthas N/A no 0.761 0.436 0.489 2e-56
Q8GUE4 603 Geraniol synthase, chloro N/A no 0.761 0.391 0.459 2e-56
Q9AR86 595 Isoprene synthase, chloro N/A no 0.854 0.445 0.458 4e-56
>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1 Back     alignment and function desciption
 Score =  518 bits (1333), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 257/291 (88%), Positives = 273/291 (93%)

Query: 20  MSSCINPSTLATSVNGFKCLPLPTNRAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQP 79
           MSSCINPSTL TSVN FKCLPL TN+AAIRIMAK KPVQCL+SAKYDNLTVDRRSANYQP
Sbjct: 1   MSSCINPSTLVTSVNAFKCLPLATNKAAIRIMAKYKPVQCLISAKYDNLTVDRRSANYQP 60

Query: 80  SIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHF 139
           SIWDHDFLQSLNSNYTDE YKRRAEEL+GKV   IKDV EPLDQLELIDNLQRLGLA+ F
Sbjct: 61  SIWDHDFLQSLNSNYTDEAYKRRAEELRGKVKIAIKDVIEPLDQLELIDNLQRLGLAHRF 120

Query: 140 ETEIRNILHNNYNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGFICN 199
           ETEIRNIL+N YNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQ+VFNGFKDD+GGFIC+
Sbjct: 121 ETEIRNILNNIYNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFNGFKDDQGGFICD 180

Query: 200 DFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQTKRALELPL 259
           DFKGI+SLHEASYYSLEGESIMEEAWQFTSKHLKEVMISK+ + DVFVAEQ KRALELPL
Sbjct: 181 DFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKNMEEDVFVAEQAKRALELPL 240

Query: 260 LWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEELKDVSRW 310
            WKVPMLEARWFI +YE+REDKNHLLLELAK+EFN LQAIYQEELK++S W
Sbjct: 241 HWKVPMLEARWFIHIYERREDKNHLLLELAKMEFNTLQAIYQEELKEISGW 291

Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 2EC: 0
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function description
>sp|Q2XSC4|LABER_LAVAN Exo-alpha-bergamotene synthase OS=Lavandula angustifolia PE=1 SV=1 Back     alignment and function description
>sp|A7IZZ2|TPS2_CANSA (+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q6EJ97|ISPS_PUEML Isoprene synthase, chloroplastic OS=Pueraria montana var. lobata GN=ISPS PE=1 SV=1 Back     alignment and function description
>sp|Q5SBP4|AZIS_OCIBA Alpha-zingiberene synthase OS=Ocimum basilicum GN=ZIS PE=1 SV=1 Back     alignment and function description
>sp|Q8GUE4|GERS_CINTE Geraniol synthase, chloroplastic OS=Cinnamomum tenuipile GN=GerS PE=1 SV=2 Back     alignment and function description
>sp|Q9AR86|ISPS_POPCN Isoprene synthase, chloroplastic OS=Populus canescens GN=ISPS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
49659435 606 d-limonene synthase [Citrus unshiu] 0.938 0.480 0.931 1e-160
21435708 606 (+)-limonene synthase 2 [Citrus limon] 0.938 0.480 0.903 1e-154
49659437 608 d-limonene synthase [Citrus unshiu] 0.938 0.478 0.911 1e-153
209446863 607 limonene synthase [Poncirus trifoliata] 0.938 0.479 0.907 1e-152
41017756 606 RecName: Full=(R)-limonene synthase 1; A 0.938 0.480 0.883 1e-144
394556815 612 geraniol synthase [Citrus jambhiri] 0.938 0.475 0.893 1e-143
322424201 607 limonene synthase [Murraya paniculata] 0.929 0.474 0.711 1e-116
45934586 590 (-)-a-terpineol synthase [Vitis vinifera 0.761 0.4 0.555 1e-70
75223392 590 RecName: Full=(-)-alpha-terpineol syntha 0.761 0.4 0.555 1e-70
359495018 600 PREDICTED: LOW QUALITY PROTEIN: myrcene 0.809 0.418 0.552 1e-70
>gi|49659435|dbj|BAD27256.1| d-limonene synthase [Citrus unshiu] Back     alignment and taxonomy information
 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 271/291 (93%), Positives = 282/291 (96%)

Query: 20  MSSCINPSTLATSVNGFKCLPLPTNRAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQP 79
           MSSCINPSTL TSVNGFKCLPL TN+AAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQP
Sbjct: 1   MSSCINPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQP 60

Query: 80  SIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHF 139
           SIWDHDFLQSLNSNYTDETYKRR EELKGKVMTTIKDVTEPL+QLELID+LQRLGLAYHF
Sbjct: 61  SIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHF 120

Query: 140 ETEIRNILHNNYNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGFICN 199
           ETEIRNILH+ YN+N DY WRKENLYATSLEFRLLRQHGYPVSQ+VFNGFKDD+GGFIC+
Sbjct: 121 ETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQEVFNGFKDDQGGFICD 180

Query: 200 DFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQTKRALELPL 259
           DFKG++SLHEASY+SLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQ KR LELPL
Sbjct: 181 DFKGVLSLHEASYFSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQAKRGLELPL 240

Query: 260 LWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEELKDVSRW 310
            WKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEELKDVSRW
Sbjct: 241 HWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEELKDVSRW 291

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|21435708|gb|AAM53946.1|AF514289_1 (+)-limonene synthase 2 [Citrus limon] Back     alignment and taxonomy information
>gi|49659437|dbj|BAD27257.1| d-limonene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|209446863|dbj|BAG74774.1| limonene synthase [Poncirus trifoliata] Back     alignment and taxonomy information
>gi|41017756|sp|Q8L5K3.1|RLC1_CITLI RecName: Full=(R)-limonene synthase 1; AltName: Full=(+)-limonene synthase 1 gi|21435703|gb|AAM53944.1|AF514287_1 (+)-limonene synthase 1 [Citrus limon] gi|152962684|dbj|BAF73932.1| limonene synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|394556815|dbj|BAM29049.1| geraniol synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|322424201|gb|ADX01382.1| limonene synthase [Murraya paniculata] Back     alignment and taxonomy information
>gi|45934586|gb|AAS79352.1| (-)-a-terpineol synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223392|sp|Q6PWU2.1|ATESY_VITVI RecName: Full=(-)-alpha-terpineol synthase gi|45934584|gb|AAS79351.1| (-)-a-terpineol synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495018|ref|XP_003634898.1| PREDICTED: LOW QUALITY PROTEIN: myrcene synthase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
UNIPROTKB|J7LH11 546 J7LH11 "(+)-epi-alpha-bisabolo 0.770 0.437 0.477 6.4e-60
UNIPROTKB|B3TPQ7 592 B3TPQ7 "Alpha-terpineol syntha 0.906 0.474 0.454 2.7e-59
UNIPROTKB|J7LQ09 542 J7LQ09 "Trans-alpha-bergamoten 0.761 0.435 0.508 9.3e-59
UNIPROTKB|Q50L36 595 ISPS "Isoprene synthase, chlor 0.854 0.445 0.451 8.8e-57
UNIPROTKB|Q8GUE4 603 GerS "Geraniol synthase, chlor 0.812 0.417 0.438 2.9e-55
UNIPROTKB|Q5UB07 580 TPS4 "Tricyclene synthase TPS4 0.829 0.443 0.442 2.1e-52
UNIPROTKB|Q8L5K4 600 Q8L5K4 "Gamma-terpinene syntha 0.858 0.443 0.427 1.5e-51
UNIPROTKB|Q9SPN0 567 QH1 "R-linalool synthase QH1, 0.758 0.414 0.463 1.9e-51
UNIPROTKB|Q8H2B4 606 Q8H2B4 "R-linalool synthase, c 0.829 0.424 0.433 3.1e-51
UNIPROTKB|B5A434 576 B5A434 "(+)-alpha-terpineol sy 0.812 0.437 0.439 4e-51
UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 118/247 (47%), Positives = 171/247 (69%)

Query:    69 TVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELID 128
             +  RRSANY+P+IW++++LQSLNS Y ++ +  +AE+LK +V   ++  ++PLD +EL+D
Sbjct:     3 STSRRSANYKPTIWNNEYLQSLNSIYGEKRFLEQAEKLKDEVRMLLEKTSDPLDHIELVD 62

Query:   129 NLQRLGLAYHFETEI-RNILHXXXXXXXXXXWRK-ENLYATSLEFRLLRQHGYPVSQDVF 186
              LQRL ++YHF   I RN+ +          W   +NL+AT+L FRLLRQHGY VS +VF
Sbjct:    63 VLQRLAISYHFTEYIDRNLKNIYDILIDGRRWNHADNLHATTLSFRLLRQHGYQVSPEVF 122

Query:   187 NGFKDDKGGF---ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQG 243
               F D+ G F   +C+D KG++SL+EASY   EGE+IM+ A  F + HLK+ +     + 
Sbjct:   123 RNFMDETGNFKKNLCDDIKGLLSLYEASYLLTEGETIMDSAQAFATHHLKQKLEENMNKN 182

Query:   244 DVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEE 303
                + ++   ALELPL W+VP L+ RW ID YE+R+D N LLLELAKL+FN+ Q++YQ+E
Sbjct:   183 ---LGDEIAHALELPLHWRVPKLDVRWSIDAYERRQDMNPLLLELAKLDFNIAQSMYQDE 239

Query:   304 LKDVSRW 310
             LK++SRW
Sbjct:   240 LKELSRW 246
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA
GO:1901943 "(+)-epi-alpha-bisabolol biosynthetic process" evidence=IDA
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q50L36 ISPS "Isoprene synthase, chloroplastic" [Populus alba (taxid:43335)] Back     alignment and assigned GO terms
UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)] Back     alignment and assigned GO terms
UNIPROTKB|Q5UB07 TPS4 "Tricyclene synthase TPS4, chloroplastic" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SPN0 QH1 "R-linalool synthase QH1, chloroplastic" [Artemisia annua (taxid:35608)] Back     alignment and assigned GO terms
UNIPROTKB|Q8H2B4 Q8H2B4 "R-linalool synthase, chloroplastic" [Mentha aquatica (taxid:190902)] Back     alignment and assigned GO terms
UNIPROTKB|B5A434 B5A434 "(+)-alpha-terpineol synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00008933001
SubName- Full=Chromosome undetermined scaffold_212, whole genome shotgun sequence; (469 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-105
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 1e-72
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 1e-25
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 1e-19
pfam03936 270 pfam03936, Terpene_synth_C, Terpene synthase famil 8e-07
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  316 bits (811), Expect = e-105
 Identities = 118/247 (47%), Positives = 165/247 (66%), Gaps = 9/247 (3%)

Query: 72  RRSANYQPSIWDHDFLQSLNSNYT-DETYKRRAEELKGKVMTTIKDVTEPLD---QLELI 127
           R SAN+ PS+W  D   SL+S+Y+ ++  +   EELK +V   ++D   P+D   +L LI
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLI 60

Query: 128 DNLQRLGLAYHFETEIRNILHNNYNNNKDY-NWRKENLYATSLEFRLLRQHGYPVSQDVF 186
           D LQRLG++YHFE EI+ IL   Y    +     +++LY T+L FRLLRQHGY VS DVF
Sbjct: 61  DRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVF 120

Query: 187 NGFKDDKGGFIC---NDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQG 243
             FKD+ G F      D KG++SL+EAS+ S  GE I++EA  FT+KHL+E +   +   
Sbjct: 121 KKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKL-ESNWII 179

Query: 244 DVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEE 303
           D  ++ + + ALE+PL   +P LEARW+I+ YE+ +D N  LLELAKL+FN+LQA++QEE
Sbjct: 180 DPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEE 239

Query: 304 LKDVSRW 310
           LK +SRW
Sbjct: 240 LKILSRW 246

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 310
cd00684 542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279 784 ent-kaur-16-ene synthase 100.0
PLN02592 800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=7.4e-79  Score=616.31  Aligned_cols=237  Identities=50%  Similarity=0.815  Sum_probs=218.3

Q ss_pred             CCCCCCCCCCCCccccccCCCCCchH-HHHHHHHHHHHHHHHhhhh---cCCccchhhHHHHHHHcCCccchHHHHHHHH
Q 021595           72 RRSANYQPSIWDHDFLQSLNSNYTDE-TYKRRAEELKGKVMTTIKD---VTEPLDQLELIDNLQRLGLAYHFETEIRNIL  147 (310)
Q Consensus        72 Rrsany~PsiW~~~fl~sl~~~~~~~-~~~~~~e~LkeeVr~ml~~---~~d~~~~L~lID~LQRLGI~yhFe~EI~~~L  147 (310)
                      |++++|+||+||+++++++.+++.+. .+.+++++||++||+|+..   ..|++++|+|||+||||||+|||++||+++|
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L   80 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEIL   80 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Confidence            78999999999997777777766544 7899999999999999976   5699999999999999999999999999999


Q ss_pred             HHhhccCCccc-cccCCcccchhhhhhhhhcCcccccccccccccCCCcc---cccchHHHHHHHHhhcCCCCCccHHHH
Q 021595          148 HNNYNNNKDYN-WRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGF---ICNDFKGIISLHEASYYSLEGESIMEE  223 (310)
Q Consensus       148 ~~iy~~~~~~~-~~~~DL~~~AL~FRLLRqhGY~VS~DvF~~Fkd~~G~F---l~~DvkglLsLYeAS~L~~~gE~ILde  223 (310)
                      ++||+.+.... ....|||+|||+|||||||||+||||||++|+|++|+|   +.+||+|||||||||||+++||+||||
T Consensus        81 ~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLde  160 (542)
T cd00684          81 DYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDE  160 (542)
T ss_pred             HHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHHH
Confidence            99998643211 12579999999999999999999999999999999999   789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhc-CCCCCcchHHHHHHhccCCccCCchhhHHHHhHHHhhccCcccHHHHHHHHhhhHHHHHHHHH
Q 021595          224 AWQFTSKHLKEVMISK-SKQGDVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQE  302 (310)
Q Consensus       224 A~~Fs~~~L~~~l~~~-~l~~~~~L~~~V~~ALe~P~h~~l~RleaR~yI~~Y~~~~~~n~~LLeLAKlDFN~~Qs~hq~  302 (310)
                      |+.||++||++.+..+ .+  +++|+++|++||++|||+++||+|||+||+.|++++++|++||||||+|||+||++||+
T Consensus       161 A~~ft~~~L~~~~~~~~~~--~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~  238 (542)
T cd00684         161 ALSFTTKHLEEKLESNWII--DPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQE  238 (542)
T ss_pred             HHHHHHHHHHHHhhccCCC--CchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHH
Confidence            9999999999998321 15  78899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCC
Q 021595          303 ELKDVSRW  310 (310)
Q Consensus       303 EL~~lsRW  310 (310)
                      ||++++||
T Consensus       239 El~~~~rW  246 (542)
T cd00684         239 ELKILSRW  246 (542)
T ss_pred             HHHHHhHH
Confidence            99999999

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 4e-56
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 5e-53
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 5e-47
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 2e-45
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 9e-42
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-37
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 3e-37
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 3e-37
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 3e-37
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 3e-37
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 3e-37
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 3e-37
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 6e-37
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 6e-37
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 1e-25
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 6e-25
3s9v_A 785 Abietadiene Synthase From Abies Grandis Length = 78 3e-21
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 1e-17
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure 
Iteration: 1

 Score =  214 bits (546), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 118/243 (48%), Positives = 165/243 (67%), Gaps = 7/243 (2%)
Query: 72  RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIK-DVTEPLDQLELIDNL 130
           RRSA+Y+P+ WD+DFL S +++ + E YK +A++L+ +V   I  +  E L  LELIDN+
Sbjct: 15  RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNV 74
Query: 131 QRLGLAYHFETEIRNILHXXXXXXXXXXWRKENLYATSLEFRLLRQHGYPVSQDVFNGFK 190
           QRLGL Y FE++IR  L             K +L+AT+L FRLLRQHG+ VSQ+ F+GFK
Sbjct: 75  QRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFK 134
Query: 191 DDKGGFICN---DFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFV 247
           D  G F+ N   D K I+SL+EAS+ +LEGE+I++EA  F   HLKE  +S+ K G   +
Sbjct: 135 DQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKE--LSEEKIGKE-L 191
Query: 248 AEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEELKDV 307
           AEQ   ALELPL  +   LEA W I+ Y K+ED N +LLELA L++N++Q++YQ +L++ 
Sbjct: 192 AEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRET 251
Query: 308 SRW 310
           SRW
Sbjct: 252 SRW 254
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 3e-82
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 2e-78
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 7e-78
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-77
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 4e-75
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 4e-74
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 3e-61
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 2e-51
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 6e-12
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 3e-49
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 5e-49
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
 Score =  258 bits (659), Expect = 3e-82
 Identities = 106/266 (39%), Positives = 167/266 (62%), Gaps = 11/266 (4%)

Query: 51  MAKNKPVQCLVSAKYDNLTVD--RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKG 108
           MA     Q +    YD+   D   R+  YQP++WD   +QS +S Y +E +  RA  +  
Sbjct: 12  MASMTGGQQMGRDLYDDDDKDRWIRTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMID 71

Query: 109 KVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNILHNNYNNNKDYNWRKENLYATS 168
           +V   +++  + + +LELID+L+RLG++ HFE EI  IL++ Y  N + +  + +LY+T+
Sbjct: 72  QVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEID--ERDLYSTA 129

Query: 169 LEFRLLRQHGYPVSQDVFNGFKDDKGGF----ICNDFKGIISLHEASYYSLEGESIMEEA 224
           L FRLLRQ+ + VSQ+VF+ FK+ KG      + +D +G++ L+EAS+ S +GE  +  A
Sbjct: 130 LRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLA 189

Query: 225 WQFTSKHLKEVMISKSKQGDVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHL 284
             F +K L++ ++      D+ +    +RALELP  W+V M  AR FID Y++R D N  
Sbjct: 190 RDFATKFLQKRVLVDK---DINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPT 246

Query: 285 LLELAKLEFNVLQAIYQEELKDVSRW 310
           +LELAKL+FN++QA +Q+ELK+ SRW
Sbjct: 247 VLELAKLDFNMVQAQFQQELKEASRW 272
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 100.0
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.79
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
Probab=100.00  E-value=4.3e-81  Score=631.88  Aligned_cols=237  Identities=43%  Similarity=0.732  Sum_probs=220.5

Q ss_pred             CCCCCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHhhhhcCCccchhhHHHHHHHcCCccchHHHHHHHHHHhh
Q 021595           72 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNILHNNY  151 (310)
Q Consensus        72 Rrsany~PsiW~~~fl~sl~~~~~~~~~~~~~e~LkeeVr~ml~~~~d~~~~L~lID~LQRLGI~yhFe~EI~~~L~~iy  151 (310)
                      ||++||+||+||++||+|+.+.+..+.+.+++++||++||+|+.+..|++++|+|||+||||||+|||++||+++|++||
T Consensus         2 r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~   81 (543)
T 2ong_A            2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIY   81 (543)
T ss_dssp             CCCCCCCCCSSCHHHHHHCCCSSCSTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHH
T ss_pred             CCCCCCCCCcCCcccccCCCchhhhhHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHH
Confidence            89999999999999999987778777899999999999999998777999999999999999999999999999999999


Q ss_pred             ccCCccc---cc-cCCcccchhhhhhhhhcCcccccccccccccCCCcc---cccchHHHHHHHHhhcCCCCCccHHHHH
Q 021595          152 NNNKDYN---WR-KENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGF---ICNDFKGIISLHEASYYSLEGESIMEEA  224 (310)
Q Consensus       152 ~~~~~~~---~~-~~DL~~~AL~FRLLRqhGY~VS~DvF~~Fkd~~G~F---l~~DvkglLsLYeAS~L~~~gE~ILdeA  224 (310)
                      +.+....   .. ..|||+|||+|||||||||+||||||++|||++|+|   +.+||+|||+|||||||++|||+|||||
T Consensus        82 ~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~eA  161 (543)
T 2ong_A           82 LDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESA  161 (543)
T ss_dssp             HTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHHHH
T ss_pred             HhhcccccccccccCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCChHHHHHH
Confidence            7542211   11 469999999999999999999999999999999999   7899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcchHHHHHHhccCCccCCchhhHHHHhHHHhhccCcccHHHHHHHHhhhHHHHHHHHHHH
Q 021595          225 WQFTSKHLKEVMISKSKQGDVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEEL  304 (310)
Q Consensus       225 ~~Fs~~~L~~~l~~~~l~~~~~L~~~V~~ALe~P~h~~l~RleaR~yI~~Y~~~~~~n~~LLeLAKlDFN~~Qs~hq~EL  304 (310)
                      +.||++||++.+..+ +. +++|+++|+|||++|||+++||+|||+||+.|++++++|+.||||||+|||+||++||+||
T Consensus       162 ~~Ft~~~L~~~~~~~-~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El  239 (543)
T 2ong_A          162 REFATKFLEEKVNEG-GV-DGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEEL  239 (543)
T ss_dssp             HHHHHHHHHHHHHSS-CS-SSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc-CC-CCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHH
Confidence            999999999988321 32 5789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCC
Q 021595          305 KDVSRW  310 (310)
Q Consensus       305 ~~lsRW  310 (310)
                      ++++||
T Consensus       240 ~~l~rW  245 (543)
T 2ong_A          240 KESFRW  245 (543)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999999
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 310
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 1e-80
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 4e-69
d5easa2 328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 2e-10
d1n1ba2 328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 4e-10
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  241 bits (616), Expect = 1e-80
 Identities = 85/207 (41%), Positives = 132/207 (63%), Gaps = 7/207 (3%)

Query: 81  IWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFE 140
           +WD +++QSLN+ YT+E +  R  EL  +V   +K+  EP+ QLELI +L+ LGL+  F+
Sbjct: 1   LWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQ 60

Query: 141 TEIRNILHNNYNNNKDYNWRKE---NLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGF- 196
            EI+ IL   YN +K ++  +    +LY T+L FRLLRQHG+ +SQDVFN FK++KG   
Sbjct: 61  DEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDF 120

Query: 197 ---ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQTKR 253
              +  D KG++ L+EAS+   +GE  +E A +F +K L++ +     + D  +    + 
Sbjct: 121 KASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRH 180

Query: 254 ALELPLLWKVPMLEARWFIDVYEKRED 280
           +L+LPL W++  +EARWFID Y +R D
Sbjct: 181 SLDLPLHWRIQSVEARWFIDAYARRPD 207
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=9.1e-72  Score=502.55  Aligned_cols=198  Identities=44%  Similarity=0.744  Sum_probs=181.1

Q ss_pred             CCCccccccCCCCCchHHHHHHHHHHHHHHHHhhhhcCCccchhhHHHHHHHcCCccchHHHHHHHHHHhhccCC---cc
Q 021595           81 IWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNILHNNYNNNK---DY  157 (310)
Q Consensus        81 iW~~~fl~sl~~~~~~~~~~~~~e~LkeeVr~ml~~~~d~~~~L~lID~LQRLGI~yhFe~EI~~~L~~iy~~~~---~~  157 (310)
                      +|||+||+|+++++.++++.+++++||++||+|+.+..|++++|+|||+||||||+|||++||+++|++||+...   +.
T Consensus         1 iW~~~fl~sl~~~~~~e~~~~r~e~Lkeevr~ml~~~~d~~~~L~lID~lqRLGisyhFe~EI~~~L~~i~~~~~~~~~~   80 (207)
T d1n1ba1           1 LWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNN   80 (207)
T ss_dssp             CCCHHHHHHCCCSTTSHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHC
T ss_pred             CCCchHHHhCCCCcccHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhchhcccc
Confidence            699999999999999999999999999999999988889999999999999999999999999999999997421   11


Q ss_pred             ccccCCcccchhhhhhhhhcCcccccccccccccCCC-cc---cccchHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHH
Q 021595          158 NWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKG-GF---ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLK  233 (310)
Q Consensus       158 ~~~~~DL~~~AL~FRLLRqhGY~VS~DvF~~Fkd~~G-~F---l~~DvkglLsLYeAS~L~~~gE~ILdeA~~Fs~~~L~  233 (310)
                      .....|||+|||+|||||||||+||||||++|+|++| +|   +.+|++|||+|||||||+++||+|||+|+.||++||+
T Consensus        81 ~~~~~DL~~~AL~FRLLRqhGy~VS~dvF~~F~d~~g~~fk~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~  160 (207)
T d1n1ba1          81 EVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQ  160 (207)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHcCCCCCHHHHHHhccCCCCchhhhHHHhHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHH
Confidence            1225699999999999999999999999999999999 78   8999999999999999999999999999999999999


Q ss_pred             HHHhhc--CCCCCcchHHHHHHhccCCccCCchhhHHHHhHHHhhccCc
Q 021595          234 EVMISK--SKQGDVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKRED  280 (310)
Q Consensus       234 ~~l~~~--~l~~~~~L~~~V~~ALe~P~h~~l~RleaR~yI~~Y~~~~~  280 (310)
                      +.++++  .+  +++|+++|.|||++|+||+||||||||||+.|+++++
T Consensus       161 ~~l~~~~~~~--~~~l~~~V~~AL~~P~~~~l~rleaR~yI~~Ye~~~d  207 (207)
T d1n1ba1         161 KKLDEGGNEI--DENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPD  207 (207)
T ss_dssp             HHTC--------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTT
T ss_pred             HHHHhccccc--chhHHHHHHHHhCCCccCCCcHHHHHHhHHHhCCCCC
Confidence            987432  34  7899999999999999999999999999999998763
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure