Citrus Sinensis ID: 021606

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MLDLNLDIASCESSSICEDKNKKKINYSSNNNIKITAMQMEDSGTSNSSVINNEEAADNASNNHVSFPFVFGIFKKENEDDDNNNNNYQPAASAAAAATILDDKAVPITRQLFPVTGAGSTTSATTGQWLNLSCATAAAAADDVDDESAAGGQELKPVQQKPQQVRKSRRGPRSRSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWEARMGQLLGKKYVYLGLFDNEAEAARSL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEEccccEEEEccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccEEEcccccccEEEEEccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccEEEEcccccEEEEEEccccEEEEccccHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccEcccEccccccEEEEEcEEccccEEEEEccccHHHHHHHc
Coil and Loop (DISEMBL)
mldlnldiascesssicedknkkkinyssNNNIKITAMqmedsgtsnssvinneeaadnasnnhvsfpFVFGIFkkenedddnnnnnyqpaASAAAAATilddkavpitrqlfpvtgagsttsattgQWLNLSCATAaaaaddvddesaaggqelkpvqqkpqqvrksrrgprsrssqyrgvtfyrrtsrweshiwdcgkqvylggfdtAHSAARAYDRAAIKfrgvdadlnfgvtdYEEDMKQMKHLSKEEFVLILRRQSngfargsskyrgvtlhkCGRWEARMGQLLGKKYVYLGLFDNEAEAARSL
Flexible Loop (DISEMBL)
mldlnldiascesssicedknkkkinySSNNNIKITAMQMEDSGTSNSSVINNEEAADNASNNHVSFPFVFGIFKKENEDDDNNNNNYQPAASAAAAATILDDKAVPITRQLFPVTGAGSTTSATTGQWLNLSCATAAAAADDVDDESaaggqelkpvqqkpqqvrksrrgprsrssqyrgvtfyrrtsrweshiWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQsngfargsskyrgvtlhkcgrwEARMGQLLGKKYVYLGLFDNEAEAARSL
Low Complexity Region (SEG)
MLDLNLDIASCESSSICEDknkkkinyssnnnikiTAMQMEDSGTSNSSVInneeaadnasnnHVSFPFVFGIFKKEnedddnnnnnyqpaasaaaaatilddkaVPITRQLFPVtgagsttsattgQWLNLSCataaaaaddvddesaaGGQELkpvqqkpqqvrksrrgprsrssqyrGVTFYRRTSRWESHIWDCGKQVYLGGFDTahsaaraydraaIKFRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWEARMGQLLGKKYVYLGLFDNEAEAARSL
Disordered region (IsUnstruct)
****************************************************************VSFPFVFGIF*************************ILDDKAVPITRQLF*****************************************************************YRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWEARMGQLLGKKYVYLGLFD*********
Disordered Region (DISOPRED)
MLDLNL*I**************************************************************************************************PI*************************************************************************VTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVTDYEEDM******************************GVTLHKCGRWEARMGQLLGKKYVYLGLFDNEAEAARS*
Disordered Region (DISEMBL)
MLDLNLDIASCESSSICEDKNKKKINYSSNNNIKITAMQM********SVINNEEAADNASNNHVSFPFVFGIFKKENEDDDNNNNNYQPAASAAAAATILDDKAVPITRQLFPVTGAGSTTSATTGQWLNLSCATAAAAADDVDDESAAGGQEL************************RGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWEARMGQLLGKKYVYLGLFDNEAEAARSL
Disordered Region (DISPRO)
*********************************************************DNASNN*VSFPFVFGIFKK***************************************************************************************************SSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWEARMGQLLGKKYVYLGLFDNEAE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDLNLDIASCESSSICEDKNKKKINYSSNNNIKITAMQMEDSGTSNSSVINNEEAADNASNNHVSFPFVFGIFKKENEDDDNNNNNYQPAASAAAAATILDDKAVPITRQLFPVTGAGSTTSATTGQWLNLSCATAAAAADDVDDESAAGGQELKPVQQKPQQVRKSRRGPRSRSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWEARMGQLLGKKYVYLGLFDNEAEAARSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
P47927	432	Floral homeotic protein A	no	no	0.638	0.458	0.645	3e-61
Q9SK03	449	Ethylene-responsive trans	yes	no	0.832	0.574	0.537	1e-60
Q9FH95	352	AP2-like ethylene-respons	no	no	0.696	0.613	0.583	1e-57
Q9LVG2	485	AP2-like ethylene-respons	no	no	0.825	0.527	0.451	2e-53
Q6PV67	325	AP2-like ethylene-respons	no	no	0.293	0.28	0.747	1e-38
Q1PFE1	415	AP2-like ethylene-respons	no	no	0.567	0.424	0.435	2e-37
Q6PQQ3	558	AP2-like ethylene-respons	no	no	0.435	0.241	0.5	4e-37
Q5YGP8	574	AP2-like ethylene-respons	no	no	0.593	0.320	0.424	4e-37
Q5YGP7	568	AP2-like ethylene-respons	no	no	0.593	0.323	0.41	1e-36
Q8LSN2	579	AP2-like ethylene-respons	N/A	no	0.435	0.233	0.493	6e-36

>sp|P47927|AP2_ARATH Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1

 Score =  235 bits (599), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 133/206 (64%), Positives = 153/206 (74%), Gaps = 8/206 (3%)

Query: 108 ITRQLFP---VTGAGSTTSATTGQWLNLS-CATAAAAADDVDDESAAGGQELKPVQQKPQ 163
           +T Q FP     G G  +      W  +  C +  A        +      ++P Q    
Sbjct: 61  VTHQFFPEMDSNGGGVASGFPRAHWFGVKFCQSDLATGSSAGKATNVAAAVVEPAQP--- 117

Query: 164 QVRKSRRGPRSRSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIK 223
            ++KSRRGPRSRSSQYRGVTFYRRT RWESHIWDCGKQVYLGGFDTAH+AARAYDRAAIK
Sbjct: 118 -LKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIK 176

Query: 224 FRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWE 283
           FRGV+AD+NF + DY++D+KQM +L+KEEFV +LRRQS GF RGSSKYRGVTLHKCGRWE
Sbjct: 177 FRGVEADINFNIDDYDDDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWE 236

Query: 284 ARMGQLLGKKYVYLGLFDNEAEAARS 309
           ARMGQ LGKKYVYLGLFD E EAAR+
Sbjct: 237 ARMGQFLGKKYVYLGLFDTEVEAARA 262

Probable transcriptional activator that promotes early floral meristem identity. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS. It is also required during seed development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK03|RAP27_ARATH Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2

 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 163/303 (53%), Positives = 198/303 (65%), Gaps = 45/303 (14%)

Query: 1   MLDLNLDIASCESSSICEDK--NKKKINYSSNNNIKITAMQMEDSGTSNSSVINNEEAAD 58
           MLDLNL+  S ES+    D   +++  + S+ N +       E+SGTS SSVIN +   D
Sbjct: 1   MLDLNLNADSPESTQYGGDSYLDRQTSDNSAGNRV-------EESGTSTSSVINADGDED 53

Query: 59  NASNNHVSFPFVFGIFKKENEDDDNNNNNYQPAASAAAAATILDDKAVPITRQLFPVTG- 117
           + S    +F   F I K  +    ++  +  PAASA+            +T++ FPV+G 
Sbjct: 54  SCSTR--AFTLSFDILKVGS----SSGGDESPAASAS------------VTKEFFPVSGD 95

Query: 118 -------AGSTTSATTGQWLNLSCATAAAAADDVDDESAAGGQELKPVQQKPQQVRKSRR 170
                   GS++S     W++LS        D + D        +      P QV+KSRR
Sbjct: 96  CGHLRDVEGSSSSR---NWIDLSF-------DRIGDGETKLVTPVPTPAPVPAQVKKSRR 145

Query: 171 GPRSRSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDAD 230
           GPRSRSSQYRGVTFYRRT RWESHIWDCGKQVYLGGFDTAH+AARAYDRAAIKFRGVDAD
Sbjct: 146 GPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDAD 205

Query: 231 LNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWEARMGQLL 290
           +NF + DYEEDMKQ+++LSKEEFV ILRRQS GF+RGSSKYRGVTLHKCGRWEARMGQ L
Sbjct: 206 INFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFL 265

Query: 291 GKK 293
           GKK
Sbjct: 266 GKK 268

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH95|TOE3_ARATH AP2-like ethylene-responsive transcription factor TOE3 OS=Arabidopsis thaliana GN=TOE3 PE=2 SV=1

 Score =  223 bits (569), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/233 (58%), Positives = 164/233 (70%), Gaps = 17/233 (7%)

Query: 78  NEDDDNNNNNYQPAASAAAAATILDDKAVPITRQLFPVTGAGSTTSATTG-QWLNLSCAT 136
           +E+ D+  N     ++  + +       +P+TR  FP        S   G +W   +   
Sbjct: 11  HEESDSRGNPVGHVSNGMSQSATWLPFVLPVTRNFFPAQ------SMEPGVRWSGFNSVG 64

Query: 137 AAAAADDVDDESAAGGQELKPVQQKPQQVRKSRRGPRSRSSQYRGVTFYRRTSRWESHIW 196
            +       D S +G  E +P    P  ++KSRRGPRSRSSQYRGVTFYRRT RWESHIW
Sbjct: 65  KS-------DPSGSGRPE-EPEISPP--IKKSRRGPRSRSSQYRGVTFYRRTGRWESHIW 114

Query: 197 DCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLI 256
           DCGKQVYLGGFDTAH+AARAYDRAAIKFRGVDAD+NF + DY +D+KQM +L+KEEF+ +
Sbjct: 115 DCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFDIEDYLDDLKQMGNLTKEEFMHV 174

Query: 257 LRRQSNGFARGSSKYRGVTLHKCGRWEARMGQLLGKKYVYLGLFDNEAEAARS 309
           LRRQS GF RGSSKYRGVTLHKCGRWE+R+GQ L KKYVYLGLFD E EAAR+
Sbjct: 175 LRRQSTGFPRGSSKYRGVTLHKCGRWESRLGQFLNKKYVYLGLFDTEIEAARA 227

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVG2|TOE2_ARATH AP2-like ethylene-responsive transcription factor TOE2 OS=Arabidopsis thaliana GN=TOE2 PE=1 SV=1

 Score =  209 bits (533), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/308 (45%), Positives = 178/308 (57%), Gaps = 52/308 (16%)

Query: 1   MLDLNLDIASCESSSICEDKNKKKINYSSNNNIKITAMQMEDSGTSNSSVINNEEAADNA 60
           MLDLNLD+ S ES+    D    K          ++  QM++S TSNSSV+N E ++   
Sbjct: 1   MLDLNLDVDSTESTQNERDSITVK---------GVSLNQMDESVTSNSSVVNAEASSCID 51

Query: 61  SNNHV----SFPFVFGIFKKENEDDDNNNNNYQPAASAAAAATILDDKAVPITRQLFPVT 116
             + +    +  F F I K                          +  AV +T++ FPV 
Sbjct: 52  GEDELCSTRTVKFQFEILK---------------GGGEEEEEDDDERSAVMMTKEFFPV- 95

Query: 117 GAGSTTSATTGQWLNLSCATAAAAADDVDDESAAGGQELKP------------VQQKP-Q 163
                      + +N   ++A ++   VD     G Q                V Q P Q
Sbjct: 96  ----------AKGMNFMDSSAQSSRSTVDISFQRGKQGGDFIGSGSGGGDASRVMQPPSQ 145

Query: 164 QVRKSRRGPRSRSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIK 223
            V+KSRRGPRS+SSQYRGVTFYRRT RWESHIWDCGKQVYLGGFDTAH+AARAYDRAA+K
Sbjct: 146 PVKKSRRGPRSKSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVK 205

Query: 224 FRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWE 283
           FRG++AD+NF + DYEED+KQM +LSKEE V +LRRQS+GF+R +S+Y+GV L K G W 
Sbjct: 206 FRGLEADINFVIGDYEEDLKQMANLSKEEVVQVLRRQSSGFSRNNSRYQGVALQKIGGWG 265

Query: 284 ARMGQLLG 291
           A+M QL G
Sbjct: 266 AQMEQLHG 273

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PV67|SNZ_ARATH AP2-like ethylene-responsive transcription factor SNZ OS=Arabidopsis thaliana GN=SNZ PE=2 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/95 (74%), Positives = 83/95 (87%)

Query: 178 QYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVTD 237
            YRGVTFYRRT RWESHIWDCGKQVYLGGFDTA++AARAYDRAAI+FRG+ AD+NF V D
Sbjct: 108 HYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYTAARAYDRAAIRFRGLQADINFIVDD 167

Query: 238 YEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYR 272
           Y++D+++MK+LSKEEFV  LRR S   ARG SKY+
Sbjct: 168 YKQDIEKMKNLSKEEFVQSLRRASASLARGGSKYK 202

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PFE1|AIL1_ARATH AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1

 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/200 (43%), Positives = 127/200 (63%), Gaps = 24/200 (12%)

Query: 132 LSCATAAAAADDVDDESAAGGQELKPVQQ---------KPQQ----VRKSRRGPRSRSSQ 178
           LS A +  A  D+ +ES    +  +PV+          KPQ      RKS      R+SQ
Sbjct: 164 LSLALSHGACSDLINESNVSARVEEPVKVDEKRKRLVVKPQVKESVPRKSVDSYGQRTSQ 223

Query: 179 YRGVTFYRRTSRWESHIWD--C--------GKQVYLGGFDTAHSAARAYDRAAIKFRGVD 228
           YRGVT +R T R+E+H+WD  C        G+QVYLGG+D    AARAYD AA+K+ G  
Sbjct: 224 YRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYDEEEKAARAYDLAALKYWGPT 283

Query: 229 ADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVT-LHKCGRWEARMG 287
             LNF +++YE++++++ +++++EFV +LRR S+GF+RG+S YRGVT  H+ GRW+AR+G
Sbjct: 284 THLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGASVYRGVTRHHQHGRWQARIG 343

Query: 288 QLLGKKYVYLGLFDNEAEAA 307
           ++ G K +YLG F  + EAA
Sbjct: 344 RVAGNKDLYLGTFSTQEEAA 363

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PQQ3|AIL5_ARATH AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2

 Score =  155 bits (392), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/146 (50%), Positives = 105/146 (71%), Gaps = 11/146 (7%)

Query: 175 RSSQYRGVTFYRRTSRWESHIWD--C--------GKQVYLGGFDTAHSAARAYDRAAIKF 224
           R+S YRGVT +R T R+E+H+WD  C        G+QVYLGG+D    AARAYD AA+K+
Sbjct: 200 RTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKY 259

Query: 225 RGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVT-LHKCGRWE 283
            G     NF +++YE ++++MKH++++EFV  LRR+S+GF+RG+S YRGVT  H+ GRW+
Sbjct: 260 WGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRWQ 319

Query: 284 ARMGQLLGKKYVYLGLFDNEAEAARS 309
           AR+G++ G K +YLG F  + EAA +
Sbjct: 320 ARIGRVAGNKDLYLGTFSTQEEAAEA 345

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP8|PLET1_ARATH AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1

 Score =  155 bits (391), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/205 (42%), Positives = 127/205 (61%), Gaps = 21/205 (10%)

Query: 123 SATTGQWLNLSCATAA-------AAADDVDDESAAGGQELKPVQQKPQQVRKSRRGPRSR 175
           SA   Q L LS  T A       A+  +   ++A+GG         P   R++      R
Sbjct: 122 SAHNLQSLTLSMGTTAGNNVVDKASPSETTGDNASGGALAVVETATP---RRALDTFGQR 178

Query: 176 SSQYRGVTFYRRTSRWESHIWD--C--------GKQVYLGGFDTAHSAARAYDRAAIKFR 225
           +S YRGVT +R T R+E+H+WD  C        G+QVYLGG+D    AAR+YD AA+K+ 
Sbjct: 179 TSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARSYDLAALKYW 238

Query: 226 GVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVT-LHKCGRWEA 284
           G     NF +T+YE+++++MKH++++EFV  +RR+S+GF+RG+S YRGVT  H+ GRW+A
Sbjct: 239 GPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQA 298

Query: 285 RMGQLLGKKYVYLGLFDNEAEAARS 309
           R+G++ G K +YLG F  E EAA +
Sbjct: 299 RIGRVAGNKDLYLGTFSTEEEAAEA 323

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP7|PLET2_ARATH AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1

 Score =  153 bits (387), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 126/200 (63%), Gaps = 16/200 (8%)

Query: 121 TTSATTGQWLNLSCATAAAAADDVDDESAAGGQELKPVQQKPQQVRKSRRGPRSRSSQYR 180
           +T A   +   +  + A  +AD+    +   G  +  V+  P   R++      R+S YR
Sbjct: 138 STGAAAAEVATVKASPAETSADNSSSTTNTSGGAI--VEATP---RRTLETFGQRTSIYR 192

Query: 181 GVTFYRRTSRWESHIWD--C--------GKQVYLGGFDTAHSAARAYDRAAIKFRGVDAD 230
           GVT +R T R+E+H+WD  C        G+QVYLGG+D    AARAYD AA+K+ G    
Sbjct: 193 GVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPSTT 252

Query: 231 LNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVT-LHKCGRWEARMGQL 289
            NF +T+YE+++++MK+++++EFV  +RR+S+GF+RG+S YRGVT  H+ GRW+AR+G++
Sbjct: 253 TNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRV 312

Query: 290 LGKKYVYLGLFDNEAEAARS 309
            G K +YLG F  E EAA +
Sbjct: 313 AGNKDLYLGTFSTEEEAAEA 332

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LSN2|BBM2_BRANA AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1

 Score =  151 bits (381), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/146 (49%), Positives = 106/146 (72%), Gaps = 11/146 (7%)

Query: 175 RSSQYRGVTFYRRTSRWESHIWD--C--------GKQVYLGGFDTAHSAARAYDRAAIKF 224
           R+S YRGVT +R T R+E+H+WD  C        G+QVYLGG+D    AARAYD AA+K+
Sbjct: 207 RTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALKY 266

Query: 225 RGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVT-LHKCGRWE 283
            G     NF +++YE+++++MKH++++E+V  LRR+S+GF+RG+S YRGVT  H+ GRW+
Sbjct: 267 WGTTTTTNFPMSEYEKEIEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQ 326

Query: 284 ARMGQLLGKKYVYLGLFDNEAEAARS 309
           AR+G++ G K +YLG F  + EAA +
Sbjct: 327 ARIGRVAGNKDLYLGTFGTQEEAAEA 352

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Brassica napus (taxid: 3708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
224100869	506	AP2 domain-containing transcription fact	0.916	0.561	0.569	3e-79
255565866	473	DNA binding protein, putative [Ricinus c	0.867	0.568	0.529	1e-77
449461037	497	PREDICTED: ethylene-responsive transcrip	0.845	0.527	0.522	6e-77
449519126	476	PREDICTED: ethylene-responsive transcrip	0.9	0.586	0.529	8e-76
449440373	463	PREDICTED: ethylene-responsive transcrip	0.9	0.602	0.529	8e-76
53830035	447	floral homeotic protein [Triticum carthl	0.767	0.532	0.555	4e-75
350539485	474	AP2 transcription factor SlAP2e [Solanum	0.854	0.559	0.562	1e-71
356572401	458	PREDICTED: floral homeotic protein APETA	0.780	0.528	0.584	2e-71
449448938	456	PREDICTED: ethylene-responsive transcrip	0.845	0.574	0.508	2e-71
225449186	497	PREDICTED: ethylene-responsive transcrip	0.783	0.488	0.625	1e-70

>gi|224100869|ref|XP_002312046.1| AP2 domain-containing transcription factor [Populus trichocarpa] gi|222851866|gb|EEE89413.1| AP2 domain-containing transcription factor [Populus trichocarpa]

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 185/325 (56%), Positives = 216/325 (66%), Gaps = 41/325 (12%)

Query: 1   MLDLNLDIASCESSSICEDKNKKKI--------NYSSNNNIKITAMQMEDSGTSNSSVIN 52
           MLDLNL I   +SS  C+D NK  +        ++           QMEDS  SNSS IN
Sbjct: 1   MLDLNLGITYSDSS--CDDNNKNGMMVIVDVENHHHQEEEEASRTRQMEDSAASNSSTIN 58

Query: 53  NEEAADNASNNHVSFPFVFGIFKKENEDDDNNNNNYQPAASAAAAATILDDKAVPITRQL 112
             E  D  S+N+ +  F+F I KK    D+N       + +   A+   +      T+QL
Sbjct: 59  TTE--DENSSNNSNSAFIFDILKK----DENFT-----STTTIDASKQTNPNCDFTTQQL 107

Query: 113 FP--------VTGAGSTTSATTGQWLNLSCATAAAAADDVDDESAAGGQELKPVQQKPQQ 164
            P        +    + T+AT  QWL LS               ++G  EL+ VQQK QQ
Sbjct: 108 SPQRSGLEFNLQPGLAGTTATRPQWLKLS------------QMGSSGEAELRIVQQKQQQ 155

Query: 165 VRKSRRGPRSRSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKF 224
            RKSRRGPRSRSSQYRGVTFYRRT RWESHIWDCGKQVYLGGFDTAH+AARAYDRAAIKF
Sbjct: 156 ARKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHTAARAYDRAAIKF 215

Query: 225 RGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWEA 284
           RGVDAD+NF ++DYEEDMKQMK+L+KEEFV ILRRQS GF+RGSSKYRGVTLHKCGRWEA
Sbjct: 216 RGVDADINFNLSDYEEDMKQMKNLNKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEA 275

Query: 285 RMGQLLGKKYVYLGLFDNEAEAARS 309
           RMGQ LGKKY+YLGLFD+E EAAR+
Sbjct: 276 RMGQFLGKKYIYLGLFDSEVEAARA 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565866|ref|XP_002523922.1| DNA binding protein, putative [Ricinus communis] gi|223536852|gb|EEF38491.1| DNA binding protein, putative [Ricinus communis]

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 173/327 (52%), Positives = 204/327 (62%), Gaps = 58/327 (17%)

Query: 1   MLDLNLDIASCESSSICEDKNKKKINYSSNNNIKITAMQM----EDSGTSNSSVINNEEA 56
           MLDLNLDI S +SS  C   N K+ + S N+ + I  + +    EDSGTSNSS+I N E 
Sbjct: 1   MLDLNLDIISSDSS--CHSHNSKRKDRSKNDYMVIPEVPVVPIEEDSGTSNSSIIINTEE 58

Query: 57  A------DNASNNHVSFPFVFGIFKKENEDDDNNNNNYQPAASAAAAATILDDKAVPITR 110
           A      +N+SNN  +  F+F I KKE  DDD+N+N+     S +             T+
Sbjct: 59  ALTNPGDENSSNNIHNSAFIFDILKKEKADDDSNSNDNAFRESKSNPHQYF------TTQ 112

Query: 111 QLFP--------VTGAGSTTSATTGQWLNLSCATAAAAADDVDDESAAGGQELKPVQQKP 162
           QLFP        +    +       QWL LS         ++D  +  G  EL+ VQQK 
Sbjct: 113 QLFPERSQLDLDLKSGLAMIRPQQHQWLKLS---------EMDSSADGGEAELRIVQQKQ 163

Query: 163 QQVRKSRRGPRSRSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAI 222
           QQ+RKSRRGPR                       DCGKQVYLGGFDTA SAARAYDRAAI
Sbjct: 164 QQMRKSRRGPR-----------------------DCGKQVYLGGFDTALSAARAYDRAAI 200

Query: 223 KFRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRW 282
           KFRGVDAD+NF ++DYEEDMKQMK+L KEEFV ILRRQSNGFARGSSKYRGVTLHKCGRW
Sbjct: 201 KFRGVDADINFTLSDYEEDMKQMKNLGKEEFVHILRRQSNGFARGSSKYRGVTLHKCGRW 260

Query: 283 EARMGQLLGKKYVYLGLFDNEAEAARS 309
           EARMGQ  GKKY+YLGLFD+E EAAR+
Sbjct: 261 EARMGQFHGKKYMYLGLFDSEVEAARA 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461037|ref|XP_004148250.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cucumis sativus] gi|449515297|ref|XP_004164686.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cucumis sativus]

 Score =  293 bits (751), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 175/335 (52%), Positives = 218/335 (65%), Gaps = 73/335 (21%)

Query: 1   MLDLNLDIASCESSSICEDKNK--KKINYSSNNNIKITAMQMEDSGTSNSSVINNEEAAD 58
           M DLNL++ S +++   ED     +K+   S N       QM++SGTSNSS++N + +++
Sbjct: 1   MFDLNLNVDSPDAAQK-EDSVVFFEKLPQGSGN-------QMDESGTSNSSIVNADTSSN 52

Query: 59  NASNNHVS-------FPFVFGIFKKENEDDDNNNNNYQPAASAAAAATILDDKAVPITRQ 111
              ++  S       F F F I K  + +D                          +T++
Sbjct: 53  GGDDDSCSTRAGGELFTFNFEILKAGSANDV-------------------------VTKE 87

Query: 112 LFPVTGAGSTTSATTG-----------------QWLNLSCATAAAAADDVDDESAAGGQE 154
           LFP+   G T +A  G                  W+NL+   + +A +         G+ 
Sbjct: 88  LFPI---GGTVNADFGILQGHNSASSSSTSSRKNWINLAFDRSGSAGE---------GRT 135

Query: 155 LKPVQQKPQQVRKSRRGPRSRSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAA 214
           ++PVQ  PQ V+KSRRGPRSRSSQYRGVTFYRRT RWESHIWDCGKQVYLGGFDTAHSAA
Sbjct: 136 VQPVQ--PQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAA 193

Query: 215 RAYDRAAIKFRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGV 274
           RAYDRAAIKFRGVDAD+NF ++DYE+D+KQMK+LSKEEFV ILRRQS GF+RGSSKYRGV
Sbjct: 194 RAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGV 253

Query: 275 TLHKCGRWEARMGQLLGKKYVYLGLFDNEAEAARS 309
           TLHKCGRWEARMGQLLGKKY+YLGLFD+E EAAR+
Sbjct: 254 TLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARA 288

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519126|ref|XP_004166586.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cucumis sativus]

 Score =  290 bits (741), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 168/317 (52%), Positives = 208/317 (65%), Gaps = 38/317 (11%)

Query: 1   MLDLNLDIASCESSSICEDKNKKKINYSSNNNIKITAMQMEDSGTSNSSVINNEEAA--- 57
           MLDLNL++ S ES+S         +   ++  ++  A +ME +G+ NSS I N + +   
Sbjct: 1   MLDLNLEVVSSESAS-------DSVEMVTDRFLQFPANRMESAGSFNSSSIVNGDLSAST 53

Query: 58  ----DNASNNHVSFPFVFGIFKKENEDDDNNNNNYQPAASAAAAATILDDKAVPITRQLF 113
               D++SN   +FPF FG              +Y    S  A +  + D     T  LF
Sbjct: 54  TGDEDSSSNADEAFPFAFG-------------KDYADQESLTAKSLCVFDDHRDQTMVLF 100

Query: 114 PVTGAGSTTSATTGQWLNLSCATAAAAADDVDDESAAGGQELKPVQQKP-QQVRKSRRGP 172
           P+TG  S+ S+   +W  +S +          +    GG   + +   P QQ RK+RRGP
Sbjct: 101 PLTGGLSSGSSPLKRWPEVSPS----------EFGYCGGAPDRRITAPPTQQQRKNRRGP 150

Query: 173 RSRSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLN 232
           RSRSSQYRGVTFYRRT RWESHIWDCGKQVYLGGFDTAH+AARAYDRAAIKFRG+DAD+N
Sbjct: 151 RSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADIN 210

Query: 233 FGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWEARMGQLLGK 292
           F V DY+ED+KQM + +KEEFV ILRR S GF+RGSSKYRGVTLHKCGRWEARMGQ LGK
Sbjct: 211 FNVCDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGK 270

Query: 293 KYVYLGLFDNEAEAARS 309
           KY+YLGLFD+E EAAR+
Sbjct: 271 KYIYLGLFDSEIEAARA 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440373|ref|XP_004137959.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cucumis sativus]

 Score =  290 bits (741), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 168/317 (52%), Positives = 208/317 (65%), Gaps = 38/317 (11%)

Query: 1   MLDLNLDIASCESSSICEDKNKKKINYSSNNNIKITAMQMEDSGTSNSSVINNEEAA--- 57
           MLDLNL++ S ES+S         +   ++  ++  A +ME +G+ NSS I N + +   
Sbjct: 1   MLDLNLEVVSSESAS-------DSVEMVTDRFLQFPANRMESAGSFNSSSIVNGDLSAST 53

Query: 58  ----DNASNNHVSFPFVFGIFKKENEDDDNNNNNYQPAASAAAAATILDDKAVPITRQLF 113
               D++SN   +FPF FG              +Y    S  A +  + D     T  LF
Sbjct: 54  TGDEDSSSNADEAFPFAFG-------------KDYADQESLTAKSLCVFDDHRDQTMVLF 100

Query: 114 PVTGAGSTTSATTGQWLNLSCATAAAAADDVDDESAAGGQELKPVQQKP-QQVRKSRRGP 172
           P+TG  S+ S+   +W  +S +          +    GG   + +   P QQ RK+RRGP
Sbjct: 101 PLTGGLSSGSSPLKRWPEVSPS----------EFGYCGGAPDRRITAPPTQQQRKNRRGP 150

Query: 173 RSRSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLN 232
           RSRSSQYRGVTFYRRT RWESHIWDCGKQVYLGGFDTAH+AARAYDRAAIKFRG+DAD+N
Sbjct: 151 RSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADIN 210

Query: 233 FGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWEARMGQLLGK 292
           F V DY+ED+KQM + +KEEFV ILRR S GF+RGSSKYRGVTLHKCGRWEARMGQ LGK
Sbjct: 211 FNVCDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGK 270

Query: 293 KYVYLGLFDNEAEAARS 309
           KY+YLGLFD+E EAAR+
Sbjct: 271 KYIYLGLFDSEIEAARA 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|53830035|gb|AAU94925.1| floral homeotic protein [Triticum carthlicum]

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 150/270 (55%), Positives = 176/270 (65%), Gaps = 32/270 (11%)

Query: 42  DSGTSNSSVINNEEAADNASNNHVSFPFVFGIFKKENEDDDNNNNNYQPAASAAAAATIL 101
           DSGTS+SSV+N+ +A                     + DDD+ +    P           
Sbjct: 12  DSGTSSSSVLNSADAGGGGFRFG----------LLGSPDDDDCSGEPAPVGPGF------ 55

Query: 102 DDKAVPITRQLFPVTGAG--STTSATTGQWLNLSCATAAAAADDVDDESAAGGQELKPVQ 159
                 +TRQLFP +  G       T GQ        A        +E          V 
Sbjct: 56  ------VTRQLFPASPPGHAGAPGVTMGQQAPAPAPMAPVWQPRRAEELL--------VA 101

Query: 160 QKPQQVRKSRRGPRSRSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDR 219
           Q+    +K+RRGPRSRSSQYRGVTFYRRT RWESHIWDCGKQVYLGGFDTAH+AAR YDR
Sbjct: 102 QRMAPAKKTRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARGYDR 161

Query: 220 AAIKFRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKC 279
           AAIKFRG++AD+NF ++DYEED+KQM++ +KEEFV ILRRQS GFARGSSKYRGVTLHKC
Sbjct: 162 AAIKFRGLEADINFNLSDYEEDLKQMRNWTKEEFVHILRRQSTGFARGSSKYRGVTLHKC 221

Query: 280 GRWEARMGQLLGKKYVYLGLFDNEAEAARS 309
           GRWEARMGQLLGKKY+YLGLFD+E EAAR+
Sbjct: 222 GRWEARMGQLLGKKYIYLGLFDSEVEAARA 251

Source: Triticum carthlicum

Species: Triticum turgidum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539485|ref|NP_001233891.1| AP2 transcription factor SlAP2e [Solanum lycopersicum] gi|333123376|gb|AEF28823.1| AP2 transcription factor SlAP2e [Solanum lycopersicum]

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 162/288 (56%), Positives = 198/288 (68%), Gaps = 23/288 (7%)

Query: 30  NNNIKITAMQMEDSGTSNSSVINNE---EAADNASNNHVSFPFVFGIFKKENEDDDNNNN 86
           NN++   ++ +++S TSNSS+ N E    A D  S       F FGI K E  +   ++N
Sbjct: 11  NNDLPQVSL-LDESATSNSSLRNAEATTSAGDEDSCAGELXAFNFGILKVEGAETSRSSN 69

Query: 87  NYQPAASAAAAATILDDKAVPITRQLFPVTGAGSTTSATTGQWLNLSCATAAAAADDVDD 146
           N                 +  +TRQLFPV   G      T + + LS A +         
Sbjct: 70  NDDEEGYGKNQRVT---HSQFVTRQLFPVDD-GELNRKQTDRVI-LSSARSG-------- 116

Query: 147 ESAAGGQELKPVQQK-----PQQVRKSRRGPRSRSSQYRGVTFYRRTSRWESHIWDCGKQ 201
            ++ G  +++ +QQ+      QQV+KSRRGPRSRSSQYRGVTFYRRT RWESHIWDCGKQ
Sbjct: 117 -TSIGFGDVRIIQQQRTEQPKQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQ 175

Query: 202 VYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQS 261
           VYLGGFDTAH+AARAYDRAAIKFRGVDAD+NF ++DYEEDM+QMK+L KEEFV +LRR S
Sbjct: 176 VYLGGFDTAHTAARAYDRAAIKFRGVDADINFSLSDYEEDMQQMKNLGKEEFVHLLRRHS 235

Query: 262 NGFARGSSKYRGVTLHKCGRWEARMGQLLGKKYVYLGLFDNEAEAARS 309
            GF+RGSSK+RGVTLHKCGRWEARMGQ LGKKY+YLGLFD+E EAAR+
Sbjct: 236 TGFSRGSSKFRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARA 283

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572401|ref|XP_003554357.1| PREDICTED: floral homeotic protein APETALA 2-like [Glycine max]

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 159/272 (58%), Positives = 183/272 (67%), Gaps = 30/272 (11%)

Query: 38  MQMEDSGTSNSSVINNEEAADNASNNHVSFPFVFGIFKKENEDDDNNNNNYQPAASAAAA 97
           +QME SG+ NSSV+N  +  D+ S    +  + F I       D        P  +A   
Sbjct: 14  LQMESSGSFNSSVVNAADTDDSCSYGD-AVAYNFAILNNAATSDG------LPLGAAGEP 66

Query: 98  ATILDDKAVPITRQLFPVTGAGSTTSATTGQWLNLSCATAAAAADDVDDESAAGGQELKP 157
           +          T QLFP       + A+   WL+ S          VD   A   Q + P
Sbjct: 67  SVR--------TIQLFPAA----DSGASAAAWLDFSS--------KVDQHGAPPEQRITP 106

Query: 158 VQQKPQQVRKSRRGPRSRSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAY 217
            QQ   QV+KSRRGPRSRSSQYRGVTFYRRT RWESHIWDCGKQVYLGGFDTAH AARAY
Sbjct: 107 RQQ---QVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHVAARAY 163

Query: 218 DRAAIKFRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLH 277
           DRAAIKFRGVDAD+NF V+DY+ED+KQM + +KEEFV ILRRQS GF+RGSSKYRGVTLH
Sbjct: 164 DRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLH 223

Query: 278 KCGRWEARMGQLLGKKYVYLGLFDNEAEAARS 309
           KCGRWEARMGQ LGKKY+YLGLFD+E EAAR+
Sbjct: 224 KCGRWEARMGQFLGKKYIYLGLFDSELEAARA 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448938|ref|XP_004142222.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cucumis sativus] gi|449518747|ref|XP_004166397.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cucumis sativus]

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 157/309 (50%), Positives = 187/309 (60%), Gaps = 47/309 (15%)

Query: 1   MLDLNLDIASCESSSICEDKNKKKINYSSNNNIKITAMQMEDSGTSNSSVINNEEAADNA 60
           MLDLNL I   E +S  +       N S +      +  + ++  SN   +N ++  D++
Sbjct: 1   MLDLNLCILPGEFTS--DGTGLHPFNLSPSGVESPISSSVHNADHSN---VNGDD--DSS 53

Query: 61  SNNHVSFPFVFGIFKKENEDDDNNNNNYQPAASAAAAATILDDKAVPITRQLFPVTGAGS 120
           SN    F F F I    N +DD  +   Q                       FPV G  S
Sbjct: 54  SNADCGFTFSFSILN--NSNDDQRDRTAQ-----------------------FPVAGGFS 88

Query: 121 TTSATTGQWLNLSCATAAAAADDVDDESAAGGQELKPVQQKPQQVRKSRRGPRSRSSQYR 180
           +   +  +W             D D   A  G     VQ+     +K RRGP+SRSSQYR
Sbjct: 89  SDVYSQRKWA------------DSDFVRATNGIV---VQKSAHPAKKGRRGPKSRSSQYR 133

Query: 181 GVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVTDYEE 240
           GVT+YRRT RWESHIWD GKQVYLGGFDTAHSAARAYDRAAIKFRGV AD+NF ++DY E
Sbjct: 134 GVTYYRRTGRWESHIWDSGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFNISDYNE 193

Query: 241 DMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWEARMGQLLGKKYVYLGLF 300
           ++KQM + SKEEFV ILRRQS GF+RGSSKYRGVTLHKCGRWEARMGQ LGKKYVYLGLF
Sbjct: 194 EIKQMGNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLF 253

Query: 301 DNEAEAARS 309
           D+E EAAR+
Sbjct: 254 DSEIEAARA 262

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449186|ref|XP_002275627.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Vitis vinifera]

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 179/286 (62%), Positives = 201/286 (70%), Gaps = 43/286 (15%)

Query: 40  MEDSGTSNSSVINNEEAADN-----ASNNHVSFPFVFGIFKKENEDDDNNNNNYQPAASA 94
           MEDSGTSNSSV+N +EA  N     +SNN  S  F FGI  K           + P   A
Sbjct: 38  MEDSGTSNSSVVNADEAPSNGGDEDSSNN--SSAFNFGILNKLGR--------HVPTYGA 87

Query: 95  AAAATILDDKAVPITRQLFPVTG-----------AGSTTSATTGQWLNLSCATAAAAADD 143
                 +++    +TRQLFP TG             S+TS    QWLNLSC         
Sbjct: 88  ------VEETPEFVTRQLFPATGDRGGGESELCSGSSSTSFPKPQWLNLSCP-------- 133

Query: 144 VDDESAAGGQELKPVQQKPQQVRKSRRGPRSRSSQYRGVTFYRRTSRWESHIWDCGKQVY 203
              E     +  +  QQ+ QQVRKSRRGPRSRSSQYRGVTFYRRT RWESHIWDCGKQVY
Sbjct: 134 ---EPIGQQKPKQQQQQQQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVY 190

Query: 204 LGGFDTAHSAARAYDRAAIKFRGVDADLNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNG 263
           LGGFDTAH+AARAYDRAAIKFRGVDAD+NF ++DYEEDMKQMK+L+KEEFV ILRRQSNG
Sbjct: 191 LGGFDTAHAAARAYDRAAIKFRGVDADINFSISDYEEDMKQMKNLNKEEFVHILRRQSNG 250

Query: 264 FARGSSKYRGVTLHKCGRWEARMGQLLGKKYVYLGLFDNEAEAARS 309
           F+RGSSKYRGVTLHKCGRWEARMGQ LGKKY+YLGLFD+E EAAR+
Sbjct: 251 FSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARA 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:2005493	432	AP2 "APETALA 2" [Arabidopsis t	0.416	0.298	0.751	4.4e-52
TAIR|locus:2155598	352	TOE3 "target of early activati	0.416	0.366	0.728	4.6e-50
TAIR|locus:2082732	346	SMZ "SCHLAFMUTZE" [Arabidopsis	0.332	0.297	0.621	3.7e-32
TAIR|locus:2056048	325	SNZ "SCHNARCHZAPFEN" [Arabidop	0.296	0.283	0.641	6.1e-31
TAIR|locus:2091891	574	PLT1 "PLETHORA 1" [Arabidopsis	0.416	0.224	0.442	3.8e-28
TAIR|locus:2200477	345	ADAP "ARIA-interacting double	0.409	0.368	0.463	1.3e-27
TAIR|locus:2173009	558	AIL5 "AINTEGUMENTA-like 5" [Ar	0.416	0.231	0.435	2e-27
TAIR|locus:2008216	568	PLT2 "PLETHORA 2" [Arabidopsis	0.416	0.227	0.435	2.8e-27
TAIR|locus:2155680	498	AIL7 "AINTEGUMENTA-like 7" [Ar	0.416	0.259	0.442	3.2e-27
TAIR|locus:2017829	313	WRI4 "WRINKLED 4" [Arabidopsis	0.409	0.405	0.456	5.7e-27

TAIR|locus:2005493 AP2 "APETALA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 97/129 (75%), Positives = 107/129 (82%)

Query:   181 GVTFYRRTSRWESHIWDCGKQVYLGGFDTXXXXXXXXXXXXIKFRGVDADLNFGVTDYEE 240
             GVTFYRRT RWESHIWDCGKQVYLGGFDT            IKFRGV+AD+NF + DY++
Sbjct:   134 GVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIDDYDD 193

Query:   241 DMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWEARMGQLLGKKYVYLGLF 300
             D+KQM +L+KEEFV +LRRQS GF RGSSKYRGVTLHKCGRWEARMGQ LGKKYVYLGLF
Sbjct:   194 DLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLF 253

Query:   301 DNEAEAARS 309
             D E EAAR+
Sbjct:   254 DTEVEAARA 262

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0010073 "meristem maintenance" evidence=IMP

GO:0009888 "tissue development" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA;TAS

GO:0048481 "ovule development" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009908 "flower development" evidence=TAS

GO:0019953 "sexual reproduction" evidence=TAS

TAIR|locus:2155598 TOE3 "target of early activation tagged (EAT) 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 94/129 (72%), Positives = 105/129 (81%)

Query:   181 GVTFYRRTSRWESHIWDCGKQVYLGGFDTXXXXXXXXXXXXIKFRGVDADLNFGVTDYEE 240
             GVTFYRRT RWESHIWDCGKQVYLGGFDT            IKFRGVDAD+NF + DY +
Sbjct:    99 GVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFDIEDYLD 158

Query:   241 DMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWEARMGQLLGKKYVYLGLF 300
             D+KQM +L+KEEF+ +LRRQS GF RGSSKYRGVTLHKCGRWE+R+GQ L KKYVYLGLF
Sbjct:   159 DLKQMGNLTKEEFMHVLRRQSTGFPRGSSKYRGVTLHKCGRWESRLGQFLNKKYVYLGLF 218

Query:   301 DNEAEAARS 309
             D E EAAR+
Sbjct:   219 DTEIEAARA 227

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009408 "response to heat" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2082732 SMZ "SCHLAFMUTZE" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 64/103 (62%), Positives = 76/103 (73%)

Query:   181 GVTFYRRTSRWESHIWDCGKQVYLGGFDTXXXXXXXXXXXXIKFRGVDADLNFGVTDYEE 240
             GVTFYRRT RWESHIWDCGKQVYLGGFDT            IKFRG+DAD+NF V DY  
Sbjct:   125 GVTFYRRTGRWESHIWDCGKQVYLGGFDTAYAAARAYDRAAIKFRGLDADINFVVDDYRH 184

Query:   241 DMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWE 283
             D+ +MK+L+K EFV  LRR+S  F RGSSKY+G+ L KC +++
Sbjct:   185 DIDKMKNLNKVEFVQTLRRESASFGRGSSKYKGLALQKCTQFK 227

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009658 "chloroplast organization" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2056048 SNZ "SCHNARCHZAPFEN" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
 Identities = 59/92 (64%), Positives = 69/92 (75%)

Query:   181 GVTFYRRTSRWESHIWDCGKQVYLGGFDTXXXXXXXXXXXXIKFRGVDADLNFGVTDYEE 240
             GVTFYRRT RWESHIWDCGKQVYLGGFDT            I+FRG+ AD+NF V DY++
Sbjct:   111 GVTFYRRTGRWESHIWDCGKQVYLGGFDTAYTAARAYDRAAIRFRGLQADINFIVDDYKQ 170

Query:   241 DMKQMKHLSKEEFVLILRRQSNGFARGSSKYR 272
             D+++MK+LSKEEFV  LRR S   ARG SKY+
Sbjct:   171 DIEKMKNLSKEEFVQSLRRASASLARGGSKYK 202

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2091891 PLT1 "PLETHORA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 3.8e-28, P = 3.8e-28
 Identities = 62/140 (44%), Positives = 93/140 (66%)

Query:   181 GVTFYRRTSRWESHIWD--C--------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVDAD 230
             GVT +R T R+E+H+WD  C        G+QVYLGG+D             +K+ G    
Sbjct:   184 GVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARSYDLAALKYWGPSTT 243

Query:   231 LNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLH-KCGRWEARMGQL 289
              NF +T+YE+++++MKH++++EFV  +RR+S+GF+RG+S YRGVT H + GRW+AR+G++
Sbjct:   244 TNFPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRV 303

Query:   290 LGKKYVYLGLFDNEAEAARS 309
              G K +YLG F  E EAA +
Sbjct:   304 AGNKDLYLGTFSTEEEAAEA 323

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2200477 ADAP "ARIA-interacting double AP2 domain protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 64/138 (46%), Positives = 88/138 (63%)

Query:   181 GVTFYRRTSRWESHIWDC----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVDAD 230
             GVT +R T R+E+H+WD           G+QVYLG +D             +K+ G D  
Sbjct:    61 GVTRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLGAYDEEDAAARAYDLAALKYWGRDTI 120

Query:   231 LNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKC-GRWEARMGQL 289
             LNF + +YEED+K+M+  SKEE++  LRR+S+GF+RG SKYRGV  H   GRWEAR+G++
Sbjct:   121 LNFPLCNYEEDIKEMESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRWEARIGRV 180

Query:   290 LGKKYVYLGLFDNEAEAA 307
              G KY+YLG +  + EAA
Sbjct:   181 FGNKYLYLGTYATQEEAA 198

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IPI

GO:0045723 "positive regulation of fatty acid biosynthetic process" evidence=IGI;IMP

GO:1901959 "positive regulation of cutin biosynthetic process" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0003677 "DNA binding" evidence=TAS

TAIR|locus:2173009 AIL5 "AINTEGUMENTA-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 2.0e-27, P = 2.0e-27
 Identities = 61/140 (43%), Positives = 92/140 (65%)

Query:   181 GVTFYRRTSRWESHIWD--C--------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVDAD 230
             GVT +R T R+E+H+WD  C        G+QVYLGG+D             +K+ G    
Sbjct:   206 GVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTT 265

Query:   231 LNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLH-KCGRWEARMGQL 289
              NF +++YE ++++MKH++++EFV  LRR+S+GF+RG+S YRGVT H + GRW+AR+G++
Sbjct:   266 TNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRV 325

Query:   290 LGKKYVYLGLFDNEAEAARS 309
              G K +YLG F  + EAA +
Sbjct:   326 AGNKDLYLGTFSTQEEAAEA 345

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009791 "post-embryonic development" evidence=IMP

GO:0009845 "seed germination" evidence=RCA;IMP

GO:0040019 "positive regulation of embryonic development" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR|locus:2008216 PLT2 "PLETHORA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 61/140 (43%), Positives = 93/140 (66%)

Query:   181 GVTFYRRTSRWESHIWD--C--------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVDAD 230
             GVT +R T R+E+H+WD  C        G+QVYLGG+D             +K+ G    
Sbjct:   193 GVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPSTT 252

Query:   231 LNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLH-KCGRWEARMGQL 289
              NF +T+YE+++++MK+++++EFV  +RR+S+GF+RG+S YRGVT H + GRW+AR+G++
Sbjct:   253 TNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRV 312

Query:   290 LGKKYVYLGLFDNEAEAARS 309
              G K +YLG F  E EAA +
Sbjct:   313 AGNKDLYLGTFSTEEEAAEA 332

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2155680 AIL7 "AINTEGUMENTA-like 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 3.2e-27, P = 3.2e-27
 Identities = 62/140 (44%), Positives = 91/140 (65%)

Query:   181 GVTFYRRTSRWESHIWD--C--------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVDAD 230
             GVT +R T R+E+H+WD  C        G+QVYLGG+D             +K+ G  A 
Sbjct:   234 GVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDRAARAYDLAALKYWGSTAT 293

Query:   231 LNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLH-KCGRWEARMGQL 289
              NF V+ Y +++++M H++K+EF+  LRR+S+GF+RG+S YRGVT H + GRW+AR+G++
Sbjct:   294 TNFPVSSYSKELEEMNHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRV 353

Query:   290 LGKKYVYLGLFDNEAEAARS 309
              G K +YLG F  E EAA +
Sbjct:   354 AGNKDLYLGTFATEEEAAEA 373

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2017829 WRI4 "WRINKLED 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 63/138 (45%), Positives = 87/138 (63%)

Query:   181 GVTFYRRTSRWESHIWDC----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVDAD 230
             GVT +R T R+E+H+WD           G+QVYLG +D             +K+ G D  
Sbjct:    55 GVTRHRWTGRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAARAYDLAALKYWGRDTL 114

Query:   231 LNFGVTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKC-GRWEARMGQL 289
             LNF +  Y+ED+K+M+  SKEE++  LRR+S+GF+RG SKYRGV  H   GRWEAR+G++
Sbjct:   115 LNFPLPSYDEDVKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRV 174

Query:   290 LGKKYVYLGLFDNEAEAA 307
              G KY+YLG +  + EAA
Sbjct:   175 FGNKYLYLGTYATQEEAA 192

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IPI

GO:0045723 "positive regulation of fatty acid biosynthetic process" evidence=IGI;IMP

GO:1901959 "positive regulation of cutin biosynthetic process" evidence=IGI

GO:0003677 "DNA binding" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018277001 SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (403 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	7e-25
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-21
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	4e-13
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	9e-12
pfam00847	53	pfam00847, AP2, AP2 domain	3e-09
pfam00847	53	pfam00847, AP2, AP2 domain	7e-04

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 94.6 bits (236), Expect = 7e-25
 Identities = 34/65 (52%), Positives = 41/65 (63%), Gaps = 3/65 (4%)

Query: 178 QYRGVTFYRRTSRWESHIWD--CGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGV 235
           +YRGV       +W + I D   GK+V+LG FDTA  AARAYDRAA KFRG  A LNF  
Sbjct: 1   KYRGVRQRPWG-KWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 236 TDYEE 240
           + Y+ 
Sbjct: 60  SLYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 85.8 bits (213), Expect = 2e-21
 Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 3/59 (5%)

Query: 177 SQYRGVTFYRRTSRWESHIWDC--GKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNF 233
           S+YRGV   R   +W + I D   G++++LG FDTA  AARAYDRAA+K RG  A LNF
Sbjct: 1   SKYRGVRQ-RPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 62.7 bits (153), Expect = 4e-13
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 270 KYRGVTLHKCGRWEARMGQLLGKKYVYLGLFDNEAEAARS 309
           KYRGV     G+W A +      K V+LG FD   EAAR+
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARA 40

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 59.2 bits (144), Expect = 9e-12
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 269 SKYRGVTLHKCGRWEARMGQLLGKKYVYLGLFDNEAEAARS 309
           SKYRGV     G+W A +    G + ++LG FD   EAAR+
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARA 41

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 177 SQYRGVTFYRRTSRWESHIWDCG----KQVYLGGFDTAHSAARAYDRAAIKFRG 226
           S Y+GV + +R  RW + I D G    K+  LG F T   AARA   A +K RG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTEE-AARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 20/43 (46%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 269 SKYRGVTLHKC-GRWEA--RMGQLLGKKYVYLGLFDNEAEAAR 308
           S Y+GV   K  GRW A  R      KK   LG F  E EAAR
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTE-EAAR 42

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.76
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.74
PHA00280	121	putative NHN endonuclease	99.62
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.18
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.1
PHA00280	121	putative NHN endonuclease	99.1
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.01
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.33

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.76  E-value=1.4e-18  Score=128.73  Aligned_cols=59  Identities=53%  Similarity=0.840  Sum_probs=55.7

Q ss_pred             CCeEeeeeecCCCcEEEEEEeC--CeEeeecCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 021606          177 SQYRGVTFYRRTSRWESHIWDC--GKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVT  236 (310)
Q Consensus       177 S~yrGV~~~~~~gkW~A~I~~~--gK~~~LG~F~T~EeAArAyD~Aa~k~~G~~a~~NFp~s  236 (310)
                      |+|+||++++. |||+|+|+++  +|++|||+|+|+||||+|||.|+++++|..+.+|||++
T Consensus         1 s~~~GV~~~~~-gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPW-GKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCC-CcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            78999997765 9999999999  99999999999999999999999999999999999864

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.74  E-value=6.4e-18  Score=126.59  Aligned_cols=61  Identities=57%  Similarity=0.897  Sum_probs=57.7

Q ss_pred             CeEeeeeecCCCcEEEEEEe--CCeEeeecCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCchh
Q 021606          178 QYRGVTFYRRTSRWESHIWD--CGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVTDYE  239 (310)
Q Consensus       178 ~yrGV~~~~~~gkW~A~I~~--~gK~~~LG~F~T~EeAArAyD~Aa~k~~G~~a~~NFp~s~y~  239 (310)
                      +|+||++ +++|||+|+|++  +++++|||+|+|+||||+|||.|+++++|..+.+|||++.|+
T Consensus         1 ~~kGV~~-~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEe-CCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            5999997 566999999999  899999999999999999999999999999999999999886

>PHA00280 putative NHN endonuclease

Probab=99.62  E-value=9.7e-16  Score=128.90  Aligned_cols=71  Identities=20%  Similarity=0.305  Sum_probs=65.5

Q ss_pred             CCchhhcccCCCCCCCCCCCeEeeeeecCCCcEEEEEEeCCeEeeecCCCCHHHHHHHHHHHHHHHcCCCCC
Q 021606          159 QQKPQQVRKSRRGPRSRSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDAD  230 (310)
Q Consensus       159 ~~~~~~~~~~~~~~~~~tS~yrGV~~~~~~gkW~A~I~~~gK~~~LG~F~T~EeAArAyD~Aa~k~~G~~a~  230 (310)
                      .....++.+|++..++++|||+||+|+++.+||+|+|+++||+++||+|+++|+|+.||+ ++.+++|.+|.
T Consensus        49 ~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         49 LALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTAEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             hcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            356788899999999999999999999999999999999999999999999999999997 77899998774

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.18  E-value=4.1e-11  Score=86.68  Aligned_cols=51  Identities=31%  Similarity=0.510  Sum_probs=46.9

Q ss_pred             CCeEeeeeecCCCcEEEEEEeC-----CeEeeecCCCCHHHHHHHHHHHHHHHcCC
Q 021606          177 SQYRGVTFYRRTSRWESHIWDC-----GKQVYLGGFDTAHSAARAYDRAAIKFRGV  227 (310)
Q Consensus       177 S~yrGV~~~~~~gkW~A~I~~~-----gK~~~LG~F~T~EeAArAyD~Aa~k~~G~  227 (310)
                      |+|+||+|++..++|+|+|++.     +|.++||.|+++++|++|++.++++++|.
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            7899999999999999999983     48999999999999999999999999873

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.10  E-value=6.3e-11  Score=87.61  Aligned_cols=42  Identities=43%  Similarity=0.768  Sum_probs=37.4

Q ss_pred             CccccceeccCCeeeEEEceecCCeEEEecCCCCHHHHhhhC
Q 021606          269 SKYRGVTLHKCGRWEARMGQLLGKKYVYLGLFDNEAEAARSL  310 (310)
Q Consensus       269 SkYrGV~~~k~gKW~ArIg~~~gkk~~~LG~F~teeEAArAY  310 (310)
                      |+|+||++++.|+|+|+|.....++.++||+|+|+|||++||
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ay   42 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAY   42 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHH
Confidence            689999998899999999533338999999999999999997

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.10  E-value=2e-10  Score=96.84  Aligned_cols=92  Identities=12%  Similarity=0.061  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHcCCCCC---CCCC-CCchhHHHHhhhccCHHHHHHHHhhccCCcccCCCccccceecc-CCeeeEEEc
Q 021606          213 AARAYDRAAIKFRGVDAD---LNFG-VTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHK-CGRWEARMG  287 (310)
Q Consensus       213 AArAyD~Aa~k~~G~~a~---~NFp-~s~y~~eL~qLr~LSKEE~V~~LRr~s~g~sR~sSkYrGV~~~k-~gKW~ArIg  287 (310)
                      +-+++..+...++|.-..   +.+- -...+..+..|+.++..+...+.+..    +.++|+|+||+|++ .+||+|+| 
T Consensus        11 ~~~~Hrlvw~~~~G~~P~g~~VdHidg~~~dnri~NLr~~T~~eN~~N~~~~----~~N~SG~kGV~~~k~~~kw~A~I-   85 (121)
T PHA00280         11 APRRHIQVWEAANGPIPKGYYIDHIDGNPLNDALDNLRLALPKENSWNMKTP----KSNTSGLKGLSWSKEREMWRGTV-   85 (121)
T ss_pred             hhhHhHhhhHHHHCCCCCCCEEEcCCCCCCCCcHHHhhhcCHHHHhcccCCC----CCCCCCCCeeEEecCCCeEEEEE-
Confidence            345677777788884321   1110 12223558888889988888776543    56789999999976 79999999 


Q ss_pred             eecCCeEEEecCCCCHHHHhhhC
Q 021606          288 QLLGKKYVYLGLFDNEAEAARSL  310 (310)
Q Consensus       288 ~~~gkk~~~LG~F~teeEAArAY  310 (310)
                       .+++|.++||.|+++|+|+.||
T Consensus        86 -~~~gK~~~lG~f~~~e~A~~a~  107 (121)
T PHA00280         86 -TAEGKQHNFRSRDLLEVVAWIY  107 (121)
T ss_pred             -EECCEEEEcCCCCCHHHHHHHH
Confidence             6899999999999999999987

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.01  E-value=2.9e-10  Score=85.13  Aligned_cols=41  Identities=44%  Similarity=0.713  Sum_probs=37.4

Q ss_pred             ccccceeccCCeeeEEEceecCCeEEEecCCCCHHHHhhhC
Q 021606          270 KYRGVTLHKCGRWEARMGQLLGKKYVYLGLFDNEAEAARSL  310 (310)
Q Consensus       270 kYrGV~~~k~gKW~ArIg~~~gkk~~~LG~F~teeEAArAY  310 (310)
                      +|+||++++.|+|+|+|....+++.++||+|+|+||||+||
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ay   41 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAY   41 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHH
Confidence            58999998889999999655589999999999999999997

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=98.33  E-value=6.3e-07  Score=64.65  Aligned_cols=42  Identities=38%  Similarity=0.607  Sum_probs=35.3

Q ss_pred             Cccccceecc-CCeeeEEEceecC---CeEEEecCCCCHHHHhhhC
Q 021606          269 SKYRGVTLHK-CGRWEARMGQLLG---KKYVYLGLFDNEAEAARSL  310 (310)
Q Consensus       269 SkYrGV~~~k-~gKW~ArIg~~~g---kk~~~LG~F~teeEAArAY  310 (310)
                      |+|+||++++ .++|+|+|+....   ++.++||.|++++||++||
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a   46 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAA   46 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHH
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHH
Confidence            6899999977 8999999965311   4899999999999999875

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
1gcc_A	63	Ethylene responsive element binding factor 1; tran	7e-14

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 64.3 bits (157), Expect = 7e-14
 Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 6/60 (10%)

Query: 178 QYRGVTFYRRTS-RWESHIWD---CGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNF 233
            YRGV   +R   ++ + I D    G +V+LG F+TA  AA AYDRAA + RG  A LNF
Sbjct: 2   HYRGVR--QRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.81
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.2
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	96.29
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	90.58
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	89.82

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.81  E-value=2.2e-20  Score=139.19  Aligned_cols=58  Identities=47%  Similarity=0.712  Sum_probs=54.0

Q ss_pred             CeEeeeeecCCCcEEEEEEe---CCeEeeecCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 021606          178 QYRGVTFYRRTSRWESHIWD---CGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVT  236 (310)
Q Consensus       178 ~yrGV~~~~~~gkW~A~I~~---~gK~~~LG~F~T~EeAArAyD~Aa~k~~G~~a~~NFp~s  236 (310)
                      +|+||+++ ++|||+|+|++   +|+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~r-~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeC-CCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            69999974 68999999999   478999999999999999999999999999999999964

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.20  E-value=5.8e-12  Score=93.60  Aligned_cols=41  Identities=29%  Similarity=0.532  Sum_probs=37.0

Q ss_pred             ccccceeccCCeeeEEEceec-CCeEEEecCCCCHHHHhhhC
Q 021606          270 KYRGVTLHKCGRWEARMGQLL-GKKYVYLGLFDNEAEAARSL  310 (310)
Q Consensus       270 kYrGV~~~k~gKW~ArIg~~~-gkk~~~LG~F~teeEAArAY  310 (310)
                      +|+||++++.|||+|+|+.+. .+++++||+|+|+||||+||
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~Ay   43 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAY   43 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHH
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHH
Confidence            699999988999999997554 36899999999999999998

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=96.29  E-value=0.0025  Score=48.65  Aligned_cols=29  Identities=28%  Similarity=0.560  Sum_probs=25.7

Q ss_pred             CCCCCeEeeeeecCCCcEEEEEEeCCeEe
Q 021606          174 SRSSQYRGVTFYRRTSRWESHIWDCGKQV  202 (310)
Q Consensus       174 ~~tS~yrGV~~~~~~gkW~A~I~~~gK~~  202 (310)
                      ...|+|.||+|+++.+.|.|+-..+|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence            46899999999999999999999998864

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=90.58  E-value=0.025  Score=48.47  Aligned_cols=87  Identities=8%  Similarity=-0.002  Sum_probs=55.0

Q ss_pred             HHHHHHHHHcCCCCC---CCCC-CCchhHHHHhhhccCHHHHHHHHhhccCCcccCCCccccceeccCCeeeEEEceecC
Q 021606          216 AYDRAAIKFRGVDAD---LNFG-VTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWEARMGQLLG  291 (310)
Q Consensus       216 AyD~Aa~k~~G~~a~---~NFp-~s~y~~eL~qLr~LSKEE~V~~LRr~s~g~sR~sSkYrGV~~~k~gKW~ArIg~~~g  291 (310)
                      ++...+..|.|....   .++- -......+..|+-++..|..........     ...++||.+.+.++|.+.|  ...
T Consensus        55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~-----~~~~~g~~~~~~~k~~~vi--~~~  127 (174)
T 1u3e_M           55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT-----LNVSKAQQIAKIKNQKPII--VIS  127 (174)
T ss_dssp             HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC-----CCCHHHHHHHHHHTCCCEE--EEC
T ss_pred             eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc-----ccceeeeeeccCCCCceEE--EEc
Confidence            566666777774321   1111 1112234788899999888776554321     1225678763356799998  344


Q ss_pred             CeEEEecCCCCHHHHhhhC
Q 021606          292 KKYVYLGLFDNEAEAARSL  310 (310)
Q Consensus       292 kk~~~LG~F~teeEAArAY  310 (310)
                       +..+||.|.|.+|||++|
T Consensus       128 -~~~~~~~f~s~~eAa~~~  145 (174)
T 1u3e_M          128 -PDGIEKEYPSTKCACEEL  145 (174)
T ss_dssp             -TTSCEEEESCHHHHHHHH
T ss_pred             -CCceEEeeCCHHHHHHHH
Confidence             556799999999999974

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=89.82  E-value=0.007  Score=52.04  Aligned_cols=37  Identities=5%  Similarity=-0.005  Sum_probs=32.3

Q ss_pred             eEeeeeecCCCcEEEEEEeCCeEeeecCCCCHHHHHHHH
Q 021606          179 YRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAY  217 (310)
Q Consensus       179 yrGV~~~~~~gkW~A~I~~~gK~~~LG~F~T~EeAArAy  217 (310)
                      ++||.+ ++.++|.+.|..+ +.++||.|.|.+|||++|
T Consensus       109 ~~g~~~-~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~  145 (174)
T 1u3e_M          109 SKAQQI-AKIKNQKPIIVIS-PDGIEKEYPSTKCACEEL  145 (174)
T ss_dssp             HHHHHH-HHHHTCCCEEEEC-TTSCEEEESCHHHHHHHH
T ss_pred             eeeeee-ccCCCCceEEEEc-CCceEEeeCCHHHHHHHH
Confidence            578887 6778899999988 778899999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	310
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	6e-20
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-08

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 79.7 bits (197), Expect = 6e-20
 Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 178 QYRGVTFYRRTSRWESHIWD---CGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNF 233
            YRGV   R   ++ + I D    G +V+LG F+TA  AA AYDRAA + RG  A LNF
Sbjct: 2   HYRGVR-QRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 270 KYRGVTLHKCGRWEARMGQLLGK-KYVYLGLFDNEAEAAR 308
            YRGV     G++ A +         V+LG F+   +AA 
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAAL 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.81
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.26

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.81  E-value=9.9e-21  Score=139.45  Aligned_cols=58  Identities=47%  Similarity=0.712  Sum_probs=53.2

Q ss_pred             CeEeeeeecCCCcEEEEEEe---CCeEeeecCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 021606          178 QYRGVTFYRRTSRWESHIWD---CGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVT  236 (310)
Q Consensus       178 ~yrGV~~~~~~gkW~A~I~~---~gK~~~LG~F~T~EeAArAyD~Aa~k~~G~~a~~NFp~s  236 (310)
                      +||||+++ ++|||+|+|++   +++++|||+|+|+||||+|||.|+++++|..+.+|||+.
T Consensus         2 ~yrGVr~r-~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeEC-CCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            59999965 57999999986   568999999999999999999999999999999999964

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.26  E-value=8.5e-13  Score=96.50  Aligned_cols=41  Identities=29%  Similarity=0.525  Sum_probs=36.8

Q ss_pred             ccccceeccCCeeeEEEcee-cCCeEEEecCCCCHHHHhhhC
Q 021606          270 KYRGVTLHKCGRWEARMGQL-LGKKYVYLGLFDNEAEAARSL  310 (310)
Q Consensus       270 kYrGV~~~k~gKW~ArIg~~-~gkk~~~LG~F~teeEAArAY  310 (310)
                      +|+||++++.|||+|+|+.+ ..+++++||+|+|+||||+||
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAY   43 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAY   43 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHH
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHH
Confidence            59999998899999999754 456789999999999999998