Citrus Sinensis ID: 021615

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MDLASKHVFIPLYILFSMHIHVTGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL
Secondary Structure (PSIPRED)
cccccccccccccccEEEEcccccEEEEcccccEEEEccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEEEHHHHHHcccccccccHHHHHHHHHccccccccccccccccccEEEEcccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHEEEEEEEcccccHHHHHHHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEcccEEEEEcccccEEEEEcccccEEEEEEcccccccccccccccccHHEEcccccccccccccccccccccHHEEEEHHHHHHHHcccccccccHHHHHHHHHHcccccccccccEccccccEEEEccHccccccccEEEEEccccHHHcHHccccHHHHHHHHHHHcEEEEEEEEcccccHHHHHHHHHHHHHHHcHHHHccccEEEEEccccccHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHcccHHcHHHHHHHHHHccccccEEEEEcc
Coil and Loop (DISEMBL)
mdlaskhvfipLYILFSMHIHVTGTVvkhkrgklfsdlahpgdevlvarggrggisllevpENRRKRMTTLTtnimrddtDKVLVLGQHGEEVSLELILRVVADVglvglpnagkSTLLAAIThakpdiadypfttlmpnlgrldgdptlgaekysseatladlpgliegahlgkglgRNFLRHLRRTRLLVHVIDAaaenpvndyrTVKEELRmynpdylerpfivvlnkidlpEARDRLQSLTEEILKIGCdkvtsetelssEDAVKSLSTEGGEADLLSSVTSvkdkrdkeiedyprplaVVGVSVL
Flexible Loop (DISEMBL)
MDLASKHVFIPLYILFSMHIHVTGTVVKHKRGKLFSDLAHPGDevlvarggrggisllevpenrrKRMTtlttnimrddtDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVhvidaaaenpvndyrtvKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKigcdkvtsetelssEDAVKSlsteggeadllssvtsvkdkrdkeiedyprplavvgvsvl
Low Complexity Region (SEG)
MDLASKHVFIPLYILFSMHIHVTGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFlrhlrrtrllvhvIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL
Disordered region (IsUnstruct)
*****KHVFIPLYILFSMHIHVTGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVP*****RMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDK*******************************************************
Disordered Region (DISOPRED)
********FIPLYILFSMHIHVTGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRK*****TTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGGEADLLSSVTSV*********DYPRPLAVVGVSVL
Disordered Region (DISEMBL)
MDLASKHVFIPLYILFSMHIHVTGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL
Disordered Region (DISPRO)
***********LYILFSMHIHVTGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTD******QHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLASKHVFIPLYILFSMHIHVTGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
Q2JJ90	347	GTPase obg OS=Synechococc	yes	no	0.654	0.585	0.444	4e-46
A9AXD9	437	GTPase obg OS=Herpetosiph	yes	no	0.635	0.450	0.457	9e-45
A1SMB4	516	GTPase obg OS=Nocardioide	yes	no	0.664	0.399	0.444	1e-44
Q3AM97	329	GTPase obg OS=Synechococc	yes	no	0.651	0.613	0.452	2e-44
Q8RBA5	424	GTPase obg OS=Thermoanaer	yes	no	0.696	0.509	0.408	2e-44
A8MHK8	430	GTPase obg OS=Alkaliphilu	yes	no	0.770	0.555	0.392	2e-44
A4XJS8	427	GTPase obg OS=Caldicellul	yes	no	0.674	0.489	0.418	7e-44
B9MRB8	427	GTPase obg OS=Caldicellul	yes	no	0.674	0.489	0.418	7e-44
B5YEQ1	435	GTPase obg OS=Dictyoglomu	yes	no	0.664	0.473	0.471	3e-43
Q46HF4	329	GTPase obg OS=Prochloroco	yes	no	0.741	0.699	0.398	4e-43

>sp|Q2JJ90|OBG_SYNJB GTPase obg OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=obg PE=3 SV=1

 Score =  185 bits (470), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 101/227 (44%), Positives = 139/227 (61%), Gaps = 24/227 (10%)

Query: 23  TGTVV-KHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTD 81
            GTVV   + G+L  DL   GD++LVARGG+GG+       N  +     T         
Sbjct: 92  CGTVVFNAETGELLGDLVGKGDQLLVARGGKGGLGNAHFLSNHNRAPRQFTK-------- 143

Query: 82  KVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL 141
                G+ GE V L L L+++A+VG+VGLPNAGKSTL++ ++ A+P IADYPFTTL PNL
Sbjct: 144 -----GEAGERVRLRLELKLIAEVGIVGLPNAGKSTLISVVSSARPKIADYPFTTLQPNL 198

Query: 142 GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN 201
           G +                 AD+PGLIEGAHLG GLG  FLRH+ RTR+L+H++D  A +
Sbjct: 199 GVV-------PHPSGDGVVFADIPGLIEGAHLGVGLGHEFLRHVERTRVLIHLVDGTAAD 251

Query: 202 PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL---PEARDRLQSLT 245
           PV DY+ +++ELR Y    +++P I+VLNKID+    +  +R Q L+
Sbjct: 252 PVKDYQVIQQELRAYGHGLIDKPQILVLNKIDVLDPQQVAERAQRLS 298

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.
Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

>sp|A9AXD9|OBG_HERA2 GTPase obg OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=obg PE=3 SV=1

 Score =  181 bits (458), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 101/221 (45%), Positives = 136/221 (61%), Gaps = 24/221 (10%)

Query: 37  DLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLE 96
           DL  PG ++LVARGG+GG+              T +  + R     +  LGQ GEE  L+
Sbjct: 109 DLLFPGQKLLVARGGKGGLG--------NTHFATASNQVPR-----IAELGQPGEERELQ 155

Query: 97  LILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYS 156
           L L+V+ADVGLVG PNAGKSTLL+ ++ A+P IA+YPFTTL PNLG         AE   
Sbjct: 156 LELKVIADVGLVGFPNAGKSTLLSMVSAARPKIANYPFTTLSPNLGV--------AEFND 207

Query: 157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA---AENPVNDYRTVKEEL 213
               +AD+PGLIEGA  G GLG +FLRH+ RTR+LVHV+DAA     +P  D+ T+  EL
Sbjct: 208 FTFVVADIPGLIEGASRGVGLGHDFLRHIERTRILVHVLDAAGTEGRDPFEDFLTINAEL 267

Query: 214 RMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD 254
           + Y+ +  +RP +V LNK D+P+A    + +  +I+  G D
Sbjct: 268 KAYSSELAQRPQLVALNKTDIPDAEAFDELMRPQIIAWGID 308

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) (taxid: 316274)

>sp|A1SMB4|OBG_NOCSJ GTPase obg OS=Nocardioides sp. (strain BAA-499 / JS614) GN=obg PE=3 SV=1

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/234 (44%), Positives = 146/234 (62%), Gaps = 28/234 (11%)

Query: 24  GTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKV 83
           GTVV   +G L +DL  PG E++VA+GGRGG+    +   +RK                 
Sbjct: 96  GTVVSDPQGHLLADLVGPGTELVVAQGGRGGLGNAALASAKRK-------------APGF 142

Query: 84  LVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 143
            +LG+ G+E+ + L L+VVAD+GLVG P+AGKS+L+AAI+ A+P IADYPFTTL+PNLG 
Sbjct: 143 ALLGEPGDELEIVLELKVVADIGLVGFPSAGKSSLIAAISRARPKIADYPFTTLVPNLGV 202

Query: 144 LD-GDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA--- 199
           +  GD T          T+AD+PGLIEGA  G+GLG +FLRH+ R   +VHV+D A+   
Sbjct: 203 VSAGDTTF---------TVADVPGLIEGASEGRGLGHDFLRHIERCAAIVHVVDTASIEP 253

Query: 200 -ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG 252
             NPV+D   ++ EL  Y     +RP +V LNK+D+P+ RD    + +E+ + G
Sbjct: 254 GRNPVDDLDVIENELTRYG-GLEDRPRLVALNKVDVPDGRDIAGFVVDELRQRG 306

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Nocardioides sp. (strain BAA-499 / JS614) (taxid: 196162)

>sp|Q3AM97|OBG_SYNSC GTPase obg OS=Synechococcus sp. (strain CC9605) GN=obg PE=3 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 142/230 (61%), Gaps = 28/230 (12%)

Query: 23  TGTVVKHKR-GKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTD 81
            GT V+H R G L  DL  PG+ + VA GGRGG+       NR +     T         
Sbjct: 92  CGTEVRHLRTGILLGDLTAPGERLTVAFGGRGGLGNAHYLSNRNRAPEKFTE-------- 143

Query: 82  KVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL 141
                G+ GEE  L+L L+++A+VG++GLPNAGKSTL+A ++ A+P IADYPFTTL+PNL
Sbjct: 144 -----GREGEEWPLQLELKLLAEVGIIGLPNAGKSTLIAVLSAARPKIADYPFTTLVPNL 198

Query: 142 G---RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA 198
           G   R  GD T+           AD+PGLIEGA  G GLG +FLRH+ RTRLL+H++DA 
Sbjct: 199 GVVRRPSGDGTV----------FADIPGLIEGAAQGSGLGHDFLRHIERTRLLIHLVDAG 248

Query: 199 AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI 248
           +E+PV D   V++EL  Y    ++RP ++V+NK +L  + D L  L +E+
Sbjct: 249 SEDPVADLNVVQQELEAYGHGLVDRPRLLVINKQEL-VSEDDLPKLQQEL 297

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Synechococcus sp. (strain CC9605) (taxid: 110662)

>sp|Q8RBA5|OBG_THETN GTPase obg OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=obg PE=3 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/240 (40%), Positives = 144/240 (60%), Gaps = 24/240 (10%)

Query: 18  MHIHVTGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMR 77
           + + V  T++  + G++ +DL  P  + +V +GG+GG        N +    TL T    
Sbjct: 88  IKVPVGTTIINDETGEVIADLIKPYQKAIVLKGGKGGRG------NAKFATPTLKTPRFA 141

Query: 78  DDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL 137
           +        G+ G E+ + L L+++ADVGLVG PNAGKSTLLA+ + A+P IA+YPFTTL
Sbjct: 142 ES-------GEKGREMWVRLELKLLADVGLVGFPNAGKSTLLASCSRARPKIANYPFTTL 194

Query: 138 MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDA 197
            PNLG +        E       +AD+PGLIEGAH G+GLG +FLRH+ RT++L+HV+D 
Sbjct: 195 TPNLGVV--------EHKGKSFVMADIPGLIEGAHRGEGLGHDFLRHIERTKMLIHVVDV 246

Query: 198 AAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD 254
           +     +PV D+  + EELR+Y+   +  P IV  NK+DLPE +++     EEI K G +
Sbjct: 247 SGSEGRDPVEDFEKINEELRLYDERLVTLPQIVAANKMDLPEGKEKYPRFEEEIKKRGYE 306

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

>sp|A8MHK8|OBG_ALKOO GTPase obg OS=Alkaliphilus oremlandii (strain OhILAs) GN=obg PE=3 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/278 (39%), Positives = 161/278 (57%), Gaps = 39/278 (14%)

Query: 24  GTVVKHKR-GKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDK 82
           GT+V+ +  G++ +DL    D+V+VARGG+GG           K  +   +++ +    +
Sbjct: 92  GTIVREENTGEIIADLTGSEDQVVVARGGKGG-----------KGNSHFKSSVRQ--APR 138

Query: 83  VLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG 142
             + G+ G+E+++ L L+++ADVGLVG PN GKSTLL+ +T AKP IA+Y FTTL PNLG
Sbjct: 139 FAIAGERGQELTVVLELKLIADVGLVGFPNVGKSTLLSVVTSAKPKIANYHFTTLTPNLG 198

Query: 143 RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA---A 199
            +         K+     LAD+PGLIEGAH G GLG  FLRH+ RT+LL+HV+D A    
Sbjct: 199 VV-------RTKFGDSFVLADIPGLIEGAHEGTGLGHEFLRHVERTKLLIHVLDVAGLEG 251

Query: 200 ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSE 259
            +P+ D+  + +EL +YN    E+P +V  NK D+P A D L+ L   + + G +     
Sbjct: 252 RDPLEDFEKINQELHLYNEKLAEKPQVVAANKTDIPGAEDNLEKLKAVLSERGIEVFPI- 310

Query: 260 TELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIED 297
                     S +T  G  +LLS V+    KR KE+E+
Sbjct: 311 ----------SAATSQGLDELLSYVS----KRLKELEE 334

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Alkaliphilus oremlandii (strain OhILAs) (taxid: 350688)

>sp|A4XJS8|OBG_CALS8 GTPase obg OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=obg PE=3 SV=2

 Score =  177 bits (450), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 100/239 (41%), Positives = 143/239 (59%), Gaps = 30/239 (12%)

Query: 23  TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTD 81
            GTV+K  + G++ +DL+  GD  +VA GGRGG               T T  + R    
Sbjct: 91  VGTVIKDAETGEIIADLSREGDRAIVAHGGRGG--------RGNAHFATATRQVPR---- 138

Query: 82  KVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL 141
               +G+ G+E+ + L L+V+ADVGL+G PN GKST L+  T+A+P+IA+YPFTT  PNL
Sbjct: 139 -FAEVGEKGDELWVILELKVLADVGLIGYPNVGKSTFLSVATNARPEIANYPFTTKYPNL 197

Query: 142 GRLDGDPTLGAEKYSSEA---TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA 198
           G +          Y SE     LAD+PGLIEGA  G GLG  FLRH+ RT++L+H++D +
Sbjct: 198 GIV----------YISEGESFVLADIPGLIEGASEGAGLGHQFLRHVERTKVLIHIVDVS 247

Query: 199 AE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD 254
                 PV D+  + EEL+ Y+P+  ++P IV  NK+DLP+A+   +   EEI K+G +
Sbjct: 248 GSEGREPVEDFIKINEELKKYSPELAQKPQIVAANKMDLPDAQAYFELFKEEIEKMGYE 306

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) (taxid: 351627)

>sp|B9MRB8|OBG_CALBD GTPase obg OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=obg PE=3 SV=1

 Score =  177 bits (450), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 100/239 (41%), Positives = 143/239 (59%), Gaps = 30/239 (12%)

Query: 23  TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTD 81
            GTV+K  + G++ +DL+  GD  +VA GGRGG               T T  + R    
Sbjct: 91  VGTVIKDAETGEIIADLSREGDRAIVAHGGRGG--------RGNSHFATSTRQVPR---- 138

Query: 82  KVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL 141
               +G+ G+E+ + L L+V+ADVGL+G PN GKST L+  T+A+P+IA+YPFTT  PNL
Sbjct: 139 -FAEVGEKGDELWVILELKVLADVGLIGYPNVGKSTFLSVATNARPEIANYPFTTKYPNL 197

Query: 142 GRLDGDPTLGAEKYSSEA---TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA 198
           G +          Y SE     LAD+PGLIEGA  G GLG  FLRH+ RT++L+H++D +
Sbjct: 198 GIV----------YISEGESFVLADIPGLIEGASEGAGLGHQFLRHVERTKVLIHIVDVS 247

Query: 199 AE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD 254
                 PV D+  + EEL+ Y+P+  ++P IV  NK+DLP+A+   +   EEI K+G +
Sbjct: 248 GSEGREPVEDFIKINEELKKYSPELAQKPQIVAANKMDLPDAQAYFELFKEEIEKMGYE 306

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Anaerocellum thermophilum (strain DSM 6725 / Z-1320) (taxid: 521460)

>sp|B5YEQ1|OBG_DICT6 GTPase obg OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=obg PE=3 SV=1

 Score =  175 bits (444), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/231 (47%), Positives = 144/231 (62%), Gaps = 25/231 (10%)

Query: 23  TGTVV-KHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTD 81
           TGT++   + G+L +DL   G  V+VARGG+GG         R       +T       +
Sbjct: 91  TGTLIFDAETGELIADLVSHGQRVVVARGGKGG---------RGNTHFATSTRQAPYFAE 141

Query: 82  KVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL 141
           K    G+ GEE  L L L+++ADVGLVGLPNAGKSTLL+ I++A P+IA YPFTT  PNL
Sbjct: 142 K----GEKGEERWLYLELKLLADVGLVGLPNAGKSTLLSKISNANPEIAPYPFTTKTPNL 197

Query: 142 GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA--A 199
           G +        E+     T+AD+PGLIEGAH  KG+G  FLRH+ RT +LV VIDAA   
Sbjct: 198 GVV--------EREDITFTVADIPGLIEGAHENKGMGDEFLRHIERTLVLVFVIDAADLV 249

Query: 200 ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK 250
             P   Y  +K+EL +Y+P  LE+P I+ +NKIDLPEA++RL  + E+ LK
Sbjct: 250 TPPQKAYEILKKELYLYSPKLLEKPRIIAINKIDLPEAQERLPEI-EKWLK 299

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) (taxid: 309799)

>sp|Q46HF4|OBG_PROMT GTPase obg OS=Prochlorococcus marinus (strain NATL2A) GN=obg PE=3 SV=1

 Score =  175 bits (443), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/261 (39%), Positives = 154/261 (59%), Gaps = 31/261 (11%)

Query: 23  TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTD 81
            GT V+H     +  DL + G +++VA GG+GG        N  +     T         
Sbjct: 92  CGTEVRHLSTNIILGDLTNKGQQLIVAFGGKGGFGNARYLSNSNRAPEKFTE-------- 143

Query: 82  KVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL 141
                G+ GEE SL+L L+++A+VG++GLPNAGKSTL++ ++ A+P IADYPFTTL+PNL
Sbjct: 144 -----GKVGEEWSLQLELKLLAEVGIIGLPNAGKSTLISVLSSARPKIADYPFTTLIPNL 198

Query: 142 G---RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA 198
           G   R  GD T+           AD+PGLI GA  G GLG +FLRH+ RT++L+H+ID+A
Sbjct: 199 GVVRRPSGDGTV----------FADIPGLISGASKGIGLGHDFLRHIERTKVLLHLIDSA 248

Query: 199 AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKV-- 256
           + +P+ND++T+ EEL  Y    + RP I VLNK +L    + ++ L  +I K+   KV  
Sbjct: 249 STDPINDFKTINEELTSYGHGLISRPRIFVLNKKELLN-ENEIKKLLNKIEKMTMKKVHI 307

Query: 257 -TSETELSSEDAVKSLSTEGG 276
            ++ T+   +D + S+  E G
Sbjct: 308 ISAVTKFGLDDLLSSIWNELG 328

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Prochlorococcus marinus (strain NATL2A) (taxid: 59920)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
317106668	504	JHL18I08.5 [Jatropha curcas]	0.922	0.567	0.811	1e-125
302142573	509	unnamed protein product [Vitis vinifera]	0.925	0.563	0.787	1e-119
449460221	503	PREDICTED: GTPase obg-like [Cucumis sati	0.922	0.568	0.766	1e-114
359492702	614	PREDICTED: GTPase obg-like [Vitis vinife	0.848	0.428	0.766	1e-111
255538792	474	GTP-dependent nucleic acid-binding prote	0.832	0.544	0.759	1e-111
356551819	490	PREDICTED: GTPase obg-like [Glycine max]	0.880	0.557	0.724	1e-110
356564323	483	PREDICTED: GTPase obg-like [Glycine max]	0.880	0.565	0.728	1e-109
242037769	505	hypothetical protein SORBIDRAFT_01g00496	0.877	0.538	0.677	1e-107
357438135	540	GTPase obg [Medicago truncatula] gi|3554	0.883	0.507	0.649	1e-104
326501518	514	predicted protein [Hordeum vulgare subsp	0.887	0.535	0.686	1e-104

>gi|317106668|dbj|BAJ53171.1| JHL18I08.5 [Jatropha curcas]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/287 (81%), Positives = 253/287 (88%), Gaps = 1/287 (0%)

Query: 24  GTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKV 83
           GTVVKHKRGKL +DLA PGDE+LVARGG+GGISLL+VPE+RRKR+ TLTTN++RDD DKV
Sbjct: 189 GTVVKHKRGKLLADLAQPGDEILVARGGQGGISLLKVPEHRRKRLMTLTTNVLRDDGDKV 248

Query: 84  LVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 143
           L+LGQ GEEVSLELILRVVADVGLVGLPNAGKSTLLAAIT AKPDIADYPFTTLMPNLGR
Sbjct: 249 LILGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITRAKPDIADYPFTTLMPNLGR 308

Query: 144 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV 203
           LDGDPTLGA  YSSEATLADLPGL+EGAHLGKGLGRNFLRHLRRTR+LVHV+DAAAE+PV
Sbjct: 309 LDGDPTLGAGMYSSEATLADLPGLVEGAHLGKGLGRNFLRHLRRTRVLVHVVDAAAEDPV 368

Query: 204 NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELS 263
           NDY TVKEELRMYNP+YLERP+IVVLNKIDLPEARDRL SL EEI +IG D+V SE E+ 
Sbjct: 369 NDYITVKEELRMYNPEYLERPYIVVLNKIDLPEARDRLSSLAEEISRIGRDEVPSEQEVV 428

Query: 264 SEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL 310
             DA  + ST    A+ LSS  S  D  DK IEDYP PLAVVGVSVL
Sbjct: 429 VNDAFHT-STRYDVANKLSSQISNGDNNDKMIEDYPAPLAVVGVSVL 474

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142573|emb|CBI19776.3| unnamed protein product [Vitis vinifera]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/287 (78%), Positives = 260/287 (90%)

Query: 24  GTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKV 83
           GTVVK KRGKL +DLA PGDE+LVARGG+GGISL+E+PE++RK++  LTTN+MRDD DKV
Sbjct: 199 GTVVKRKRGKLLADLAQPGDEILVARGGQGGISLIEMPEHKRKKLMALTTNVMRDDNDKV 258

Query: 84  LVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 143
           LVLGQ GEEVSLELILRVVADVGLVGLPNAGKSTLLAAIT AKPDIADYPFTTLMPNLGR
Sbjct: 259 LVLGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGR 318

Query: 144 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV 203
           LDGDP+LGA KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV+DAAAE+PV
Sbjct: 319 LDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAEDPV 378

Query: 204 NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELS 263
            DYRTVKEELRMYNP+YLERP++VVLNKID+P+A DRL SLT+EI+KIG +++ S ++  
Sbjct: 379 KDYRTVKEELRMYNPNYLERPYVVVLNKIDIPKAMDRLPSLTQEIMKIGSEQIPSSSQNG 438

Query: 264 SEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL 310
           +EDA++SL ++   A++LS     KD++DKEIEDYP PLAVVGVSVL
Sbjct: 439 TEDAIQSLPSDSEGANVLSLDFPDKDRKDKEIEDYPWPLAVVGVSVL 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460221|ref|XP_004147844.1| PREDICTED: GTPase obg-like [Cucumis sativus] gi|449521477|ref|XP_004167756.1| PREDICTED: GTPase obg-like [Cucumis sativus]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/287 (76%), Positives = 254/287 (88%), Gaps = 1/287 (0%)

Query: 24  GTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKV 83
           GTVVK KRGKL +DL HPGDE+LVARGG+GGISL++ PENR+K+M +LT+N+MRD++DKV
Sbjct: 187 GTVVKRKRGKLLADLVHPGDEILVARGGQGGISLIDTPENRKKKMMSLTSNVMRDESDKV 246

Query: 84  LVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 143
           LV GQ GEEVSLELILRVVADVGLVGLPNAGKSTLLAAIT AKPDIADYPFTTL+PNLGR
Sbjct: 247 LVFGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLIPNLGR 306

Query: 144 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV 203
           LDGDP+LGA  Y SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV+DAAA+NPV
Sbjct: 307 LDGDPSLGAGMYQSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAQNPV 366

Query: 204 NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELS 263
           +DYRTV+EELRMYNP+YL RP++VVLNKIDLPEA++RL S+TEEIL+IG D    E ++ 
Sbjct: 367 DDYRTVREELRMYNPNYLGRPYVVVLNKIDLPEAKNRLPSVTEEILRIGTDDRYPE-QMG 425

Query: 264 SEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL 310
           SE++V+S   E   A + S    V D++DKEIEDYPRPL+VVGVSVL
Sbjct: 426 SENSVQSSVLEDDLATVPSLEIPVADEKDKEIEDYPRPLSVVGVSVL 472

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492702|ref|XP_002280904.2| PREDICTED: GTPase obg-like [Vitis vinifera]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/287 (76%), Positives = 244/287 (85%), Gaps = 24/287 (8%)

Query: 24  GTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKV 83
           GTVVK KRGKL +DLA PGDE+LVARGG+GGISL+E+PE++RK++  LTTN+MRDD DKV
Sbjct: 328 GTVVKRKRGKLLADLAQPGDEILVARGGQGGISLIEMPEHKRKKLMALTTNVMRDDNDKV 387

Query: 84  LVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 143
           LVLGQ GEEVSLELILRVVADVGLVGLPNAGKSTLLAAIT AKPDIADYPFTTLMPNLGR
Sbjct: 388 LVLGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGR 447

Query: 144 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV 203
           LDGDP+LGA KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV+DAAAE+PV
Sbjct: 448 LDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAEDPV 507

Query: 204 NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELS 263
            DYRTVKEELRMYNP+YLERP++VVLNKID+P+A DRL SLT+EI+KIG           
Sbjct: 508 KDYRTVKEELRMYNPNYLERPYVVVLNKIDIPKAMDRLPSLTQEIMKIGS---------- 557

Query: 264 SEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL 310
                         A++LS     KD++DKEIEDYP PLAVVGVSVL
Sbjct: 558 --------------ANVLSLDFPDKDRKDKEIEDYPWPLAVVGVSVL 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538792|ref|XP_002510461.1| GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis] gi|223551162|gb|EEF52648.1| GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/287 (75%), Positives = 239/287 (83%), Gaps = 29/287 (10%)

Query: 24  GTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKV 83
           GTVVKHKRGKL +DL  PGDE+LVARGG+GGISLL+ PE+RRKR+  LTTN++RDD+DKV
Sbjct: 185 GTVVKHKRGKLLADLTQPGDEILVARGGQGGISLLDAPEHRRKRLMALTTNVLRDDSDKV 244

Query: 84  LVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 143
           LVLGQ GEEV+LELILRVVADVGLVGLPNAGKSTLLAAITHA+PDIADYPFTTLMPNLGR
Sbjct: 245 LVLGQPGEEVNLELILRVVADVGLVGLPNAGKSTLLAAITHARPDIADYPFTTLMPNLGR 304

Query: 144 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV 203
           LDGDPTLGA  YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV+DAAAE+PV
Sbjct: 305 LDGDPTLGAAMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAEDPV 364

Query: 204 NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELS 263
           NDYRTVKEELRMYNP+YLERP +VVLNKIDLP A+DRL SLTEEI +IG  ++ +     
Sbjct: 365 NDYRTVKEELRMYNPEYLERPHVVVLNKIDLPGAKDRLSSLTEEISEIGSSEIFN----- 419

Query: 264 SEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL 310
                                    D+ DKEIEDYP PLAVVGVSVL
Sbjct: 420 ------------------------GDRNDKEIEDYPAPLAVVGVSVL 442

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551819|ref|XP_003544271.1| PREDICTED: GTPase obg-like [Glycine max]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/287 (72%), Positives = 246/287 (85%), Gaps = 14/287 (4%)

Query: 24  GTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKV 83
           GTVVK KRGK+ +DLA P DEVLVARGG+GGISLLE+P+++RK+M  LTTN+MRD++DKV
Sbjct: 186 GTVVKSKRGKMLADLAQPWDEVLVARGGQGGISLLEIPQHKRKKMMALTTNVMRDESDKV 245

Query: 84  LVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 143
           L+ GQ GEEV LELILRVVAD+GL+GLPNAGKSTLLAAIT AKPDIADYPFTTLMPNLGR
Sbjct: 246 LIHGQPGEEVKLELILRVVADIGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGR 305

Query: 144 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV 203
           L GDP+LGA  YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV+DAA ENP+
Sbjct: 306 LGGDPSLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAATENPI 365

Query: 204 NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELS 263
           NDYRTV+EELRMYNP+YLERP++++LNKIDLPEA+D+LQSLT+EI++IG +   SE +  
Sbjct: 366 NDYRTVREELRMYNPEYLERPYVIILNKIDLPEAKDKLQSLTQEIMRIGNNGAASEPKPC 425

Query: 264 SEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL 310
           SE              +L  ++   D+++K +EDYPRPL+VVGVSVL
Sbjct: 426 SE--------------VLDPLSDETDRKEKRLEDYPRPLSVVGVSVL 458

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564323|ref|XP_003550404.1| PREDICTED: GTPase obg-like [Glycine max]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/287 (72%), Positives = 245/287 (85%), Gaps = 14/287 (4%)

Query: 24  GTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKV 83
           GTVVK KRGK+ +DLA P DEVLVARGG+GGISLLE+P+++RK+M  LTTN+MRDD+DKV
Sbjct: 179 GTVVKSKRGKMLADLAQPWDEVLVARGGQGGISLLEMPQHKRKKMMALTTNVMRDDSDKV 238

Query: 84  LVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 143
           L+ GQ GEEV LELILRVVADVGL+GLPNAGKSTLLAAIT AKPDIADYPFTTLMPNLGR
Sbjct: 239 LIHGQPGEEVKLELILRVVADVGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGR 298

Query: 144 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV 203
           L GDP+LGA  YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV+DAA ENP+
Sbjct: 299 LGGDPSLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAATENPI 358

Query: 204 NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELS 263
           NDYRTV+EELRMYNP+YL+RP++V+LNKIDLPEA+D+L SLT+EI++IG D   S+ + S
Sbjct: 359 NDYRTVREELRMYNPEYLDRPYVVILNKIDLPEAKDKLPSLTQEIMRIGNDGAASDPKPS 418

Query: 264 SEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL 310
            E              +L  ++   D+++K +EDYPRPL+VVGVSVL
Sbjct: 419 PE--------------VLDPLSDETDRKEKRLEDYPRPLSVVGVSVL 451

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242037769|ref|XP_002466279.1| hypothetical protein SORBIDRAFT_01g004960 [Sorghum bicolor] gi|241920133|gb|EER93277.1| hypothetical protein SORBIDRAFT_01g004960 [Sorghum bicolor]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/295 (67%), Positives = 232/295 (78%), Gaps = 23/295 (7%)

Query: 24  GTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKV 83
           GTVVK K+G + +DLAHPGDEVLVARGG+GGISL++VPE RR++   L+ NIMRD +DKV
Sbjct: 199 GTVVKRKKGAVLADLAHPGDEVLVARGGQGGISLIDVPEYRRRKAMALSPNIMRDTSDKV 258

Query: 84  LVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 143
           L  GQ GEEVSLELILRVVADVGLVGLPNAGKSTLL+AIT A+PDIADYPFTTLMPNLGR
Sbjct: 259 LTHGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLSAITLARPDIADYPFTTLMPNLGR 318

Query: 144 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV 203
           L GDP LGA ++SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR++VHV+DAAA++PV
Sbjct: 319 LGGDPALGALQFSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRVIVHVVDAAADDPV 378

Query: 204 NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSET--- 260
           NDY+ V+EELRMYNP YLERP++VVLNKIDLP+A DRL SL  EI  IGC++   ++   
Sbjct: 379 NDYKIVREELRMYNPQYLERPYVVVLNKIDLPKANDRLSSLALEISSIGCEEGHDQSGSK 438

Query: 261 -----ELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL 310
                 +S+   +     EGGE               KE+ DYPRP AVV  SVL
Sbjct: 439 DNLHGHVSNHQVLSEAKVEGGE---------------KELGDYPRPQAVVAASVL 478

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438135|ref|XP_003589343.1| GTPase obg [Medicago truncatula] gi|355478391|gb|AES59594.1| GTPase obg [Medicago truncatula]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/331 (64%), Positives = 244/331 (73%), Gaps = 57/331 (17%)

Query: 24  GTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKV 83
           GTVVK KRGK+ +DLA PGDEVLVARGG+GGISLLE+P + RK+ T+LTTN+MRDD+DKV
Sbjct: 191 GTVVKSKRGKMLADLARPGDEVLVARGGQGGISLLEMPRHNRKKATSLTTNVMRDDSDKV 250

Query: 84  LVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 143
           LV GQ GEEV LELILRVVADVGL+GLPNAGKSTLLAAIT AKPDIADYPFTTLMPNLGR
Sbjct: 251 LVHGQPGEEVKLELILRVVADVGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGR 310

Query: 144 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV 203
           LDGDP LGA  YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV+DA+ ENPV
Sbjct: 311 LDGDPNLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDASTENPV 370

Query: 204 NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE--------------------------- 236
           NDYRTV+EELRMYNP+YLERP+IVVLNKIDLPE                           
Sbjct: 371 NDYRTVREELRMYNPEYLERPYIVVLNKIDLPELMRLPSLWSLVRVIHLAPGMGGSVSTS 430

Query: 237 -----------------ARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGGEAD 279
                              DRL +LT+EI++IG +   SE + SSE + + LS E     
Sbjct: 431 RTQGHLATWRLLYHCAKVEDRLPTLTQEIMRIGSNGAASEPKPSSEVSAQLLSEE----- 485

Query: 280 LLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL 310
                    D ++K++EDYPRP +V+GVSVL
Sbjct: 486 --------SDPKEKKLEDYPRPHSVIGVSVL 508

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326501518|dbj|BAK02548.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/287 (68%), Positives = 232/287 (80%), Gaps = 12/287 (4%)

Query: 24  GTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKV 83
           GTVV+ K+G + +DLAHPGDEVLVARGG+GGISL++ P+ +R +   L+ N+MRD TDKV
Sbjct: 213 GTVVRRKKGSVLADLAHPGDEVLVARGGQGGISLIDAPDYKRGKAMALSPNVMRDVTDKV 272

Query: 84  LVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 143
           L  GQ GEE+SLELILRVVADVGLVGLPNAGKSTLL+AIT A+PDIADYPFTTLMPNLGR
Sbjct: 273 LTHGQPGEEISLELILRVVADVGLVGLPNAGKSTLLSAITLARPDIADYPFTTLMPNLGR 332

Query: 144 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV 203
           L GDPTLGA ++SS ATLADLPGLIEGAHLGKGLGRNFLRHLRRTR++VHV+DAAA++PV
Sbjct: 333 LGGDPTLGALQFSSGATLADLPGLIEGAHLGKGLGRNFLRHLRRTRVIVHVVDAAADDPV 392

Query: 204 NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELS 263
           NDY+ V+EELRMYNP YLERP++VVLNKIDLP+A+DRL SL  EI  +GC++        
Sbjct: 393 NDYKIVREELRMYNPKYLERPYVVVLNKIDLPKAQDRLSSLALEISSVGCEE-------- 444

Query: 264 SEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL 310
           S D  K+ S E    +      S  D  DKE+ DYPRP AV+G SVL
Sbjct: 445 SHD--KNASKEKLNVNFNRHHMSEDD--DKELGDYPRPQAVIGASVL 487

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TIGR_CMR|CHY_0370	429	CHY_0370 "spo0B-associated GTP	0.851	0.615	0.364	7.2e-36
ZFIN|ZDB-GENE-040718-153	380	gtpbp10 "GTP-binding protein 1	0.561	0.457	0.392	1.5e-35
TIGR_CMR|BA_4672	428	BA_4672 "spo0B-associated GTP-	0.658	0.476	0.4	2.4e-35
TAIR|locus:2182998	681	EMB269 "EMBRYO DEFECTIVE 269"	0.680	0.309	0.376	3.3e-34
MGI|MGI:2385599	366	Gtpbp10 "GTP-binding protein 1	0.658	0.557	0.365	4.4e-34
UNIPROTKB|Q0BZ39	356	obg "GTPase obg" [Hyphomonas n	0.819	0.713	0.372	1.1e-32
UNIPROTKB|A4D1E9	387	GTPBP10 "GTP-binding protein 1	0.483	0.387	0.394	1.3e-32
UNIPROTKB|P71909	479	obg "GTPase obg" [Mycobacteriu	0.670	0.434	0.396	3.7e-32
UNIPROTKB|Q71ZD3	429	obg "GTPase obg" [Listeria mon	0.658	0.475	0.382	6e-32
UNIPROTKB|F1S322	388	GTPBP10 "Uncharacterized prote	0.490	0.391	0.396	6.9e-32

TIGR_CMR|CHY_0370 CHY_0370 "spo0B-associated GTP-binding protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 108/296 (36%), Positives = 162/296 (54%)

Query:    17 SMHIHV-TGTVVKHKR-GKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTN 74
             +++I V  GTVVK +  G++ +D+   G EV+VARGGRGG         R        T+
Sbjct:    84 NLYIRVPVGTVVKDEATGEILADITEHGQEVVVARGGRGG---------RGNAHFASPTH 134

Query:    75 IMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPF 134
                    K   LG+ GEE  L L L+++ADVGLVG PNAGKSTL++ ++ A+P IADYPF
Sbjct:   135 ----QAPKFAELGEPGEERWLLLELKLLADVGLVGYPNAGKSTLISRVSAARPKIADYPF 190

Query:   135 TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXX 194
             TTL PNLG ++    +G         +AD+PGLIEGAH G GLG  F             
Sbjct:   191 TTLTPNLGVVE----VGE---GQSFVMADIPGLIEGAHAGVGLGHQFLRHVERTRVLLMV 243

Query:   195 IDAAA---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI 251
             +D +     +PV+D+  + +EL++YN   L +P ++  NK+D   A++ L+ L + I   
Sbjct:   244 LDMSGFEGRDPVDDFEVLLKELKLYNEQLLTKPLVIAANKMDTANAQENLEKLKQHIA-- 301

Query:   252 GCDKVTSETELSSEDAVKSLSTEGGEADLLSSVT--SVKDKRDKEIEDYPRPLAVV 305
             G  ++   + L+ E  +K L     E  ++S++   S++ K  K I++ P    VV
Sbjct:   302 GKYEIYPISALTGE-GLKPLIYRLWE--IISTLPRESLEVKPQKVIKEQPEEGFVV 354

GO:0005525 "GTP binding" evidence=ISS

GO:0030436 "asexual sporulation" evidence=ISS

ZFIN|ZDB-GENE-040718-153 gtpbp10 "GTP-binding protein 10 (putative)" [Danio rerio (taxid:7955)]

 Score = 321 (118.1 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 77/196 (39%), Positives = 111/196 (56%)

Query:    86 LGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD 145
             L   G+  ++ L L+++AD GLVG PNAGKS+LL A++HAKP IA+YPFTT+ P +G++ 
Sbjct:   132 LPNKGQTRNIRLDLKLIADFGLVGFPNAGKSSLLTALSHAKPKIANYPFTTIKPEIGKVM 191

Query:   146 GDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDA-----AAE 200
              D          + ++ADLPGLIEGAH+ KG+G  F             +D      A++
Sbjct:   192 YDD-------HKQVSVADLPGLIEGAHVNKGMGHKFLKHVERTKQLMFVVDVCGFQLASK 244

Query:   201 NPVND-YRTV---KEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKV 256
              P    + TV    +EL +Y  + L +P I+V+NK+DLPEA+   Q L  ++   G    
Sbjct:   245 TPFRSAFETVLLLSKELELYKEELLSKPAILVINKMDLPEAQSHFQELEAQLENQG---- 300

Query:   257 TSETELSSEDAV-KSL 271
                  L SED + KSL
Sbjct:   301 -ESIHLFSEDVIPKSL 315

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

TIGR_CMR|BA_4672 BA_4672 "spo0B-associated GTP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 92/230 (40%), Positives = 130/230 (56%)

Query:    24 GTVVK-HKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDK 82
             GTVVK  K G++ +DL   G   ++A+GGRGG            R  T T     +   +
Sbjct:    92 GTVVKDEKTGQILADLVTHGQTAVIAKGGRGG--------RGNSRFATAT-----NPAPE 138

Query:    83 VLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG 142
             +   G+ G+E  + L L+V+ADVGLVG P+ GKSTLL+ ++ A+P IA+Y FTT++PNLG
Sbjct:   139 IAENGEPGQERDVILELKVLADVGLVGFPSVGKSTLLSVVSSARPKIAEYHFTTIVPNLG 198

Query:   143 RLD-GDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAA-- 199
              ++ GD        +    +ADLPGLIEGAH G GLG  F             ID +   
Sbjct:   199 VVETGD--------NRSFVMADLPGLIEGAHAGVGLGHQFLRHIERTRVIVHVIDMSGLE 250

Query:   200 -ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI 248
               +P  DY T+  EL+ YN    ERP +VV NK+D+P+A + LQ+  E++
Sbjct:   251 GRDPYEDYVTINNELKEYNLRLTERPQVVVANKMDMPDAEENLQAFKEKV 300

GO:0000160 "phosphorelay signal transduction system" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0030436 "asexual sporulation" evidence=ISS

TAIR|locus:2182998 EMB269 "EMBRYO DEFECTIVE 269" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 3.3e-34, P = 3.3e-34
 Identities = 88/234 (37%), Positives = 129/234 (55%)

Query:    24 GTVVKHKRGK---LFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDT 80
             G+ V+ + G+   +  +L HPG   L+  GGRGG           K +  +  N      
Sbjct:   310 GSEVEGEEGEEKEVLLELLHPGQRALLLPGGRGGRGNASFKSGMNK-VPRIAEN------ 362

Query:    81 DKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN 140
                   G+ G E+ L+L L++VADVG+VG PNAGKSTLL+ I+ A+P IA+YPFTTL+PN
Sbjct:   363 ------GEEGPEMWLDLELKLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPN 416

Query:   141 LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAE 200
             LG +  D       Y S   +ADLPGL+EGAH G GLG  F             +D +A 
Sbjct:   417 LGVVSFD-------YDSTMVVADLPGLLEGAHRGFGLGHEFLRHTERCSALVHVVDGSAP 469

Query:   201 NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD 254
              P  ++  V+ EL +++P+  E+P++V  NK+DLP+A ++     E +   G +
Sbjct:   470 QPELEFEAVRLELELFSPEIAEKPYVVAYNKMDLPDAYEKWPMFQETLRARGIE 523

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0006364 "rRNA processing" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0016556 "mRNA modification" evidence=RCA

MGI|MGI:2385599 Gtpbp10 "GTP-binding protein 10 (putative)" [Mus musculus (taxid:10090)]

 Score = 317 (116.6 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
 Identities = 83/227 (36%), Positives = 126/227 (55%)

Query:    90 GEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT 149
             G++  + L L+V+ADVGLVG PNAGKS+LL+ ++HA P IADY FTTL P LG++  +  
Sbjct:   136 GQKRIVHLDLKVIADVGLVGFPNAGKSSLLSRVSHATPVIADYAFTTLRPELGKIMYNDF 195

Query:   150 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAE--NPVNDYR 207
                     + ++ADLPGLIEGAH+ KG+G  F             +D +    + V  YR
Sbjct:   196 -------KQISVADLPGLIEGAHMNKGMGHKFLKHLERTRQLLFVVDISGFQLSSVTPYR 248

Query:   208 TVKE-------ELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSET 260
             T  E       EL +Y  +   +P ++ +NK+DLP+A+ +LQ L +++L         ET
Sbjct:   249 TAFETIILLTKELELYKEELQTKPALLAINKMDLPDAQVKLQELMKQLLSPEDFLHLFET 308

Query:   261 ELSSEDAVK-----SLSTEGGE--ADLLSSVTSVKDKRDKEIEDYPR 300
             ++  E A++      +ST  GE  A+L S +    D++D +  D  R
Sbjct:   309 KMIPEKALEFQHIVPISTVTGEGIAELKSCIRKALDEQDGKESDAHR 355

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q0BZ39 obg "GTPase obg" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 105/282 (37%), Positives = 148/282 (52%)

Query:    24 GT-VVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDK 82
             GT + +  +  + +DL   G  VL+A GG GG   L     R K  +++     R +   
Sbjct:    93 GTQIYEEDQETMIADLTEVGQRVLLAPGGNGGWGNL-----RFK--SSINQAPRRSNP-- 143

Query:    83 VLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG 142
                 G+ GEE  + L L+++AD GLVGLPNAGKST L+  T A P IADYPFTTL P LG
Sbjct:   144 ----GEEGEERWIWLRLKLIADAGLVGLPNAGKSTFLSVATAANPKIADYPFTTLHPGLG 199

Query:   143 RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAENP 202
              +D    LG    S+   LAD+PGLIEGA  G GLG  F             ID   ++P
Sbjct:   200 VVD----LGT---STRFVLADIPGLIEGAAEGAGLGHRFLGHVERCKVLLHLIDCTQDDP 252

Query:   203 VNDYRTVKEELRMYNPDYLERPFIVVLNKIDL--PE-ARDRLQSLTEEILKIGCDKVTSE 259
                YRT++ EL  Y+ D+ +RP IV LNKID   PE  +++L+ L +++ K     ++  
Sbjct:   253 AGAYRTIRSELEAYDADFADRPEIVALNKIDALTPELVKEQLKQL-KKVYKGKPLLISGV 311

Query:   260 TELSSEDAVKSLSTEGG--EADLLSSVTSVKDKRDKEIEDYP 299
             T    +DA+ +++   G    D+     S  D+ D +  D P
Sbjct:   312 TGAGVKDALYAIAQHLGFNNDDIPLPKPSNADEEDPDT-DQP 352

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A4D1E9 GTPBP10 "GTP-binding protein 10" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
 Identities = 67/170 (39%), Positives = 99/170 (58%)

Query:    90 GEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT 149
             G++  + L L+++ADVGLVG PNAGKS+LL+ ++HAKP IADY FTTL P LG++     
Sbjct:   136 GQKRIIHLDLKLIADVGLVGFPNAGKSSLLSCVSHAKPAIADYAFTTLKPELGKI----- 190

Query:   150 LGAEKYSS--EATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAE--NPVND 205
                  YS   + ++ADLPGLIEGAH+ KG+G  F             +D +    +    
Sbjct:   191 ----MYSDFKQISVADLPGLIEGAHMNKGMGHKFLKHIERTRQLLFVVDISGFQLSSHTQ 246

Query:   206 YRTVKE-------ELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI 248
             YRT  E       EL +Y  +   +P ++ +NK+DLP+A+D+   L  ++
Sbjct:   247 YRTAFETIILLTKELELYKEELQTKPALLAVNKMDLPDAQDKFHELMSQL 296

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|P71909 obg "GTPase obg" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 96/242 (39%), Positives = 130/242 (53%)

Query:    24 GTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKV 83
             GTVV  + G+L +DL   G     A GGRGG+    +    RK                 
Sbjct:    94 GTVVLDENGRLLADLVGAGTRFEAAAGGRGGLGNAALASRVRK-------------APGF 140

Query:    84 LVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 143
              +LG+ G+   L L L+ VADVGLVG P+AGKS+L++AI+ AKP IADYPFTTL+PNLG 
Sbjct:   141 ALLGEKGQSRDLTLELKTVADVGLVGFPSAGKSSLVSAISAAKPKIADYPFTTLVPNLGV 200

Query:   144 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAA-AE-- 200
             +      G   +    T+AD+PGLI GA  G+GLG +F             +D A AE  
Sbjct:   201 VSA----GEHAF----TVADVPGLIPGASRGRGLGLDFLRHIERCAVLVHVVDCATAEPG 252

Query:   201 -NPVNDYRTVKEELRMYNP---------DYLERPFIVVLNKIDLPEARDRLQSLTEEILK 250
              +P++D   ++ EL  Y P         D   RP  VVLNKID+PEAR+  + + ++I +
Sbjct:   253 RDPISDIDALETELACYTPTLQGDAALGDLAARPRAVVLNKIDVPEARELAEFVRDDIAQ 312

Query:   251 IG 252
              G
Sbjct:   313 RG 314

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005840 "ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IDA

GO:0040007 "growth" evidence=IMP

GO:0046777 "protein autophosphorylation" evidence=IDA

UNIPROTKB|Q71ZD3 obg "GTPase obg" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 88/230 (38%), Positives = 123/230 (53%)

Query:    24 GTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDK 82
             GT+VK    G++ +DL   G   ++A+ GRGG           KR  T   N   + ++ 
Sbjct:    92 GTIVKDIDTGEIIADLVAHGQRAVIAKAGRGG--------RGNKRFAT-PANPAPELSEN 142

Query:    83 VLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG 142
                 G+ G+E +++L L+V+ADVGLVG P+ GKSTLL+ ++ A+P IA Y FTT++PNLG
Sbjct:   143 ----GEPGQERNVQLELKVLADVGLVGFPSVGKSTLLSVVSAARPKIAAYHFTTIVPNLG 198

Query:   143 RLD-GDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAEN 201
              +D GD             +ADLPGLIEGA  G GLG  F             ID +   
Sbjct:   199 MVDAGD--------GRSFVMADLPGLIEGASQGVGLGHQFLRHIERTRVIVHVIDMSGSE 250

Query:   202 ---PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI 248
                P  DY  +  EL  YN   +ERP I+V NK+D+P+A + L     +I
Sbjct:   251 GRVPYEDYMAINNELEQYNLRLMERPQIIVANKMDMPDAEENLNEFKTKI 300

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1S322 GTPBP10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 296 (109.3 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
 Identities = 67/169 (39%), Positives = 99/169 (58%)

Query:    90 GEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT 149
             G+   + L L+++ADVGLVG PNAGKS+LL+ I+HAKP IADY FTTL P LG++  +  
Sbjct:   136 GQRRVIHLDLKLIADVGLVGFPNAGKSSLLSKISHAKPAIADYAFTTLKPELGKIMYNDF 195

Query:   150 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAENPVND--YR 207
                     + ++ADLPGLIEGAH+ KG+G  F             +D +     +   YR
Sbjct:   196 -------KQISVADLPGLIEGAHMNKGMGHKFLKHIERTKQLLFVVDISGFQLSSQTRYR 248

Query:   208 TV--------KEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI 248
             T         K+EL +Y  +   +P ++ +NK+DLP+A+D+ Q L  ++
Sbjct:   249 TAFETIILLTKKELELYKEELQTKPALLAVNKMDLPDAQDKFQVLMNQL 297

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Sb01g004960.1	hypothetical protein (506 aa)
		(Sorghum bicolor)
Predicted Functional Partners:
	Sb04g009660.1	hypothetical protein; This protein binds to 23S rRNA (By similarity) (210 aa)	•						•		0.861
	Sb07g005640.1	hypothetical protein (146 aa)	•						•		0.820
	Sb09g025720.1	hypothetical protein (146 aa)	•						•		0.815
	Sb04g003970.1	hypothetical protein (562 aa)			•				•		0.780
	Sb07g020060.1	hypothetical protein (549 aa)							•		0.767
	Sb10g003070.1	hypothetical protein (665 aa)			•				•		0.745
	Sb03g044280.1	hypothetical protein (189 aa)	•						•		0.744
	Sb1824s002010.1	hypothetical protein (228 aa)	•						•		0.729
	Sb05g025430.1	hypothetical protein (685 aa)			•				•		0.729
	Sb09g028120.1	hypothetical protein; This protein binds to 23S rRNA (By similarity) (250 aa)	•						•		0.601

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
PRK12297	424	PRK12297, obgE, GTPase CgtA; Reviewed	4e-84
PRK12299	335	PRK12299, obgE, GTPase CgtA; Reviewed	1e-83
TIGR02729	329	TIGR02729, Obg_CgtA, Obg family GTPase CgtA	4e-82
COG0536	369	COG0536, Obg, Predicted GTPase [General function p	6e-80
cd01898	170	cd01898, Obg, Obg GTPase	2e-71
PRK12298	390	PRK12298, obgE, GTPase CgtA; Reviewed	1e-66
PRK12296	500	PRK12296, obgE, GTPase CgtA; Reviewed	2e-66
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	4e-39
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	1e-26
cd01899	318	cd01899, Ygr210, Ygr210 GTPase	2e-26
COG0012	372	COG0012, COG0012, Predicted GTPase, probable trans	5e-26
PRK09602	396	PRK09602, PRK09602, translation-associated GTPase;	1e-24
cd01896	233	cd01896, DRG, Developmentally Regulated GTP-bindin	5e-21
cd00880	161	cd00880, Era_like, E	8e-21
COG1163	365	COG1163, DRG, Predicted GTPase [General function p	3e-20
PTZ00258	390	PTZ00258, PTZ00258, GTP-binding protein; Provision	2e-19
PRK09601	364	PRK09601, PRK09601, GTP-binding protein YchF; Revi	8e-19
cd01900	274	cd01900, YchF, YchF GTPase	8e-18
COG1084	346	COG1084, COG1084, Predicted GTPase [General functi	7e-14
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	1e-13
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-13
PRK11058	426	PRK11058, PRK11058, GTPase HflX; Provisional	3e-13
TIGR03156	351	TIGR03156, GTP_HflX, GTP-binding protein HflX	2e-11
COG2262	411	COG2262, HflX, GTPases [General function predictio	9e-11
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-10
TIGR00436	270	TIGR00436, era, GTP-binding protein Era	4e-10
cd01878	204	cd01878, HflX, HflX GTPase family	8e-10
COG1159	298	COG1159, Era, GTPase [General function prediction	3e-09
TIGR00092	368	TIGR00092, TIGR00092, GTP-binding protein YchF	1e-08
cd04163	168	cd04163, Era, E	1e-08
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	1e-06
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	1e-06
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	2e-06
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	4e-06
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	7e-06
cd01876	170	cd01876, YihA_EngB, YihA (EngB) GTPase family	3e-05
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	4e-05
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	1e-04
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	2e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	3e-04
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	3e-04
COG0218	200	COG0218, COG0218, Predicted GTPase [General functi	4e-04
cd09915	175	cd09915, Rag, Rag GTPase subfamily of Ras-related	7e-04
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	8e-04
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	8e-04
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	0.003
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	0.003

>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed

 Score =  259 bits (664), Expect = 4e-84
 Identities = 106/231 (45%), Positives = 145/231 (62%), Gaps = 28/231 (12%)

Query: 24  GTVVK-HKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDK 82
           GTVVK  + G++ +DL  PG EV+VA+GGRGG           +      T+  +    +
Sbjct: 92  GTVVKDAETGEVIADLVEPGQEVVVAKGGRGG-----------RGNAHFATSTNQ--APR 138

Query: 83  VLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG 142
           +   G+ GEE  L L L+++ADVGLVG PN GKSTLL+ +++AKP IA+Y FTTL+PNLG
Sbjct: 139 IAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG 198

Query: 143 --RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA- 199
               D   +           +AD+PGLIEGA  G GLG  FLRH+ RTR++VHVID +  
Sbjct: 199 VVETDDGRSF---------VMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGS 249

Query: 200 --ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI 248
              +P+ DY  + +EL++YNP  LERP IVV NK+DLPEA + L+   E++
Sbjct: 250 EGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKL 300

Length = 424

>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed

 Score =  254 bits (652), Expect = 1e-83
 Identities = 104/243 (42%), Positives = 137/243 (56%), Gaps = 39/243 (16%)

Query: 24  GTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGI------SLLEVPENRRKRMTTLTTNIM 76
           GT +     G+L +DL   G   LVA+GG+GG+      S      NR  R  T      
Sbjct: 92  GTQIYDADTGELIADLTEHGQRFLVAKGGKGGLGNAHFKS----STNRAPRYATP----- 142

Query: 77  RDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT 136
                     G+ GEE  L L L+++ADVGLVGLPNAGKSTL++A++ AKP IADYPFTT
Sbjct: 143 ----------GEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTT 192

Query: 137 LMPNLG---RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVH 193
           L PNLG     D               +AD+PGLIEGA  G GLG  FL+H+ RTRLL+H
Sbjct: 193 LHPNLGVVRVDDYKSF----------VIADIPGLIEGASEGAGLGHRFLKHIERTRLLLH 242

Query: 194 VIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC 253
           ++D  A +PV DY+T++ EL  Y+P+  ++P I+VLNKIDL +  +  +      L    
Sbjct: 243 LVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALG 302

Query: 254 DKV 256
             V
Sbjct: 303 GPV 305

Length = 335

>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA

 Score =  250 bits (642), Expect = 4e-82
 Identities = 111/245 (45%), Positives = 148/245 (60%), Gaps = 41/245 (16%)

Query: 24  GTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGI------SLLEVPENRRKRMTTLTTNIM 76
           GTVV     G+L +DL  PG   LVA+GGRGG+      S      NR  R  T      
Sbjct: 91  GTVVYDADTGELLADLTEPGQRFLVAKGGRGGLGNAHFKS----STNRAPRFATP----- 141

Query: 77  RDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT 136
                     G+ GEE  L L L+++ADVGLVGLPNAGKSTL++A++ AKP IADYPFTT
Sbjct: 142 ----------GEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTT 191

Query: 137 LMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV 194
           L+PNLG  R+D   +           +AD+PGLIEGA  G GLG  FL+H+ RTR+L+H+
Sbjct: 192 LVPNLGVVRVDDGRSF---------VIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHL 242

Query: 195 IDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI 251
           ID + E   +P+ DY  ++ EL+ Y+P+  E+P IVVLNKIDL +  + L+ L +E+ + 
Sbjct: 243 IDISPEDGSDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE-EELEELLKELKEA 301

Query: 252 GCDKV 256
               V
Sbjct: 302 LGKPV 306

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329

>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only]

 Score =  246 bits (631), Expect = 6e-80
 Identities = 121/291 (41%), Positives = 166/291 (57%), Gaps = 42/291 (14%)

Query: 20  IHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGI--SLLEVPENRRKRMTTLTTNI 75
           I V  GTVV+    G+L +DL   G   LVA+GGRGG+  +  +   NR  R  T     
Sbjct: 88  IKVPVGTVVRDEDTGELLADLTEHGQRFLVAKGGRGGLGNAHFKSSVNRAPRFATP---- 143

Query: 76  MRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFT 135
                      G+ GEE  L L L+++ADVGLVGLPNAGKSTLL+A++ AKP IADYPFT
Sbjct: 144 -----------GEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFT 192

Query: 136 TLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVH 193
           TL+PNLG  R+DG  +           +AD+PGLIEGA  G GLG  FLRH+ RTR+L+H
Sbjct: 193 TLVPNLGVVRVDGGESF---------VVADIPGLIEGASEGVGLGLRFLRHIERTRVLLH 243

Query: 194 VIDAAAEN---PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK 250
           VID +  +   P+ DY+T++ EL  Y+P   E+P IVVLNKIDLP   + L+ L + + +
Sbjct: 244 VIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAE 303

Query: 251 IGCDKVTSETELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRP 301
                            + +L+ EG + +LL ++  + ++   E E     
Sbjct: 304 --------ALGWEVFYLISALTREGLD-ELLRALAELLEETKAEAEAAEAE 345

Length = 369

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score =  218 bits (557), Expect = 2e-71
 Identities = 89/151 (58%), Positives = 111/151 (73%), Gaps = 13/151 (8%)

Query: 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--RLDGDPTLGAEKYSSEAT 160
           ADVGLVGLPNAGKSTLL+AI++AKP IADYPFTTL+PNLG  R+D   +           
Sbjct: 1   ADVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSF---------V 51

Query: 161 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPD 219
           +AD+PGLIEGA  GKGLG  FLRH+ RTR+L+HVID +  ++PV DY T++ EL  YNP 
Sbjct: 52  IADIPGLIEGASEGKGLGHRFLRHIERTRVLLHVIDLSGEDDPVEDYETIRNELEAYNPG 111

Query: 220 YLERPFIVVLNKIDLPEARDRLQSLTEEILK 250
             E+P IVVLNKIDL +A +R +   +E+LK
Sbjct: 112 LAEKPRIVVLNKIDLLDAEERFE-KLKELLK 141

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed

 Score =  213 bits (544), Expect = 1e-66
 Identities = 98/234 (41%), Positives = 133/234 (56%), Gaps = 31/234 (13%)

Query: 24  GTVVK-HKRGKLFSDLAHPGDEVLVARGGRGGI--SLLEVPENRRKRMTTLTTNIMRDDT 80
           GT V     G++  DL   G  +LVA+GG  G+  +  +   NR  R  T          
Sbjct: 93  GTRVIDADTGEVIGDLTEHGQRLLVAKGGWHGLGNTRFKSSVNRAPRQKTP--------- 143

Query: 81  DKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN 140
                 G  GEE  L+L L+++ADVGL+GLPNAGKST + A++ AKP +ADYPFTTL+PN
Sbjct: 144 ------GTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPN 197

Query: 141 LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA-- 198
           LG +  D             +AD+PGLIEGA  G GLG  FL+HL R R+L+H+ID A  
Sbjct: 198 LGVVRVDD-------ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPI 250

Query: 199 -AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL---PEARDRLQSLTEEI 248
              +PV + R +  EL  Y+P   E+P  +V NKIDL    EA +R +++ E +
Sbjct: 251 DGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL 304

Length = 390

>gnl|CDD|237045 PRK12296, obgE, GTPase CgtA; Reviewed

 Score =  215 bits (551), Expect = 2e-66
 Identities = 102/238 (42%), Positives = 140/238 (58%), Gaps = 34/238 (14%)

Query: 24  GTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKV 83
           GTVV  + G++ +DL   G   + A GGRGG+    +    RK                 
Sbjct: 94  GTVVLDEDGEVLADLVGAGTRFVAAAGGRGGLGNAALASKARK-------------APGF 140

Query: 84  LVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 143
            +LG+ GEE  L L L+ VADVGLVG P+AGKS+L++A++ AKP IADYPFTTL+PNLG 
Sbjct: 141 ALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGV 200

Query: 144 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE--- 200
           +      G  ++    T+AD+PGLI GA  GKGLG +FLRH+ R  +LVHV+D A     
Sbjct: 201 V----QAGDTRF----TVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPG 252

Query: 201 -NPVNDYRTVKEELRMYNP---------DYLERPFIVVLNKIDLPEARDRLQSLTEEI 248
            +P++D   ++ EL  Y P         D  ERP +VVLNKID+P+AR+  + +  E+
Sbjct: 253 RDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL 310

Length = 500

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score =  135 bits (341), Expect = 4e-39
 Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 19/171 (11%)

Query: 106 GLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD-GDPTLGAEKYSSEATLADL 164
           GLVGLPN GKSTLL+A+T AK +IA YPFTTL PN+G  + GD          +  + DL
Sbjct: 1   GLVGLPNVGKSTLLSALTSAKVEIASYPFTTLEPNVGVFEFGDGV--------DIQIIDL 52

Query: 165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYL 221
           PGL++GA  G+GLG   L HL R+ L++HVIDA+ +   +P+ D +T+ EE+        
Sbjct: 53  PGLLDGASEGRGLGEQILAHLYRSDLILHVIDASEDCVGDPLEDQKTLNEEVSGSFLFLK 112

Query: 222 ERPFIVVLNKIDLPEA----RDRLQSLTEEILKIGCDKVTSETELSSEDAV 268
            +P ++V NKID+       R +L  L   I  +     ++ T L  +  +
Sbjct: 113 NKPEMIVANKIDMASENNLKRLKLDKLKRGIPVV---PTSALTRLGLDRVI 160

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score =  101 bits (253), Expect = 1e-26
 Identities = 55/131 (41%), Positives = 69/131 (52%), Gaps = 17/131 (12%)

Query: 104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 162
            V LVG PN GKSTL+ A+T AK  I +DYP TT          DP LG      +  L 
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSDYPGTTR---------DPILGVLGLGRQIILV 51

Query: 163 DLPGLIEGAHLGKGLG--RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY 220
           D PGLIEGA  GKG+     FL  +R   L++ V+D A+E    D   + EEL       
Sbjct: 52  DTPGLIEGASEGKGVEGFNRFLEAIREADLILLVVD-ASEGLTEDDEEILEELEKLP--- 107

Query: 221 LERPFIVVLNK 231
            ++P I+VLNK
Sbjct: 108 -KKPIILVLNK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206686 cd01899, Ygr210, Ygr210 GTPase

 Score =  105 bits (265), Expect = 2e-26
 Identities = 54/148 (36%), Positives = 73/148 (49%), Gaps = 29/148 (19%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG----RLD-GDPTLGAEKYSSEA 159
           +GLVG PN GKST   A T A  +IA+YPFTT+ PN+G    R++     LG        
Sbjct: 1   IGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYG 60

Query: 160 T-----------LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE-------- 200
                       L D+ GL+ GAH GKGLG  FL  LR   +L+HV+DA+          
Sbjct: 61  KCIDGKRYVPVELIDVAGLVPGAHEGKGLGNQFLDDLRDADVLIHVVDASGGTDAEGNGV 120

Query: 201 -----NPVNDYRTVKEELRMYNPDYLER 223
                +P+ D   ++ E+ M+    LER
Sbjct: 121 ETGGYDPLEDIEFLENEIDMWIYGILER 148

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. Length = 318

>gnl|CDD|223091 COG0012, COG0012, Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

 Score =  105 bits (265), Expect = 5e-26
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 26/142 (18%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-------RLDGDPTLGAEKYSS 157
           +G+VGLPN GKSTL  A+T A  +IA+YPF T+ PN+G       RLD    L       
Sbjct: 5   IGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLD---ELAEIVKCP 61

Query: 158 EAT------LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------N 201
                      D+ GL++GA  G+GLG  FL ++R    ++HV+    +          +
Sbjct: 62  PKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVD 121

Query: 202 PVNDYRTVKEELRMYNPDYLER 223
           PV D   +  EL +++ + LE+
Sbjct: 122 PVEDIEIINTELILWDLESLEK 143

Length = 372

>gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed

 Score =  102 bits (256), Expect = 1e-24
 Identities = 55/148 (37%), Positives = 73/148 (49%), Gaps = 29/148 (19%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-----------RLDGDPTLGAE 153
           +GLVG PN GKST   A T A  +IA+YPFTT+ PN+G            L         
Sbjct: 4   IGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNG 63

Query: 154 KYSSE-----ATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----AE---- 200
           K           L D+ GL+ GAH G+GLG  FL  LR+   L+HV+DA+     E    
Sbjct: 64  KCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPV 123

Query: 201 -----NPVNDYRTVKEELRMYNPDYLER 223
                +PV D + ++EEL M+    LE+
Sbjct: 124 EPGSHDPVEDIKFLEEELDMWIYGILEK 151

Length = 396

>gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein (DRG)

 Score = 89.1 bits (222), Expect = 5e-21
 Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 10/112 (8%)

Query: 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 162
           A V LVG P+ GKSTLL+ +T+ K ++A Y FTTL    G ++     GA     +  L 
Sbjct: 1   ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVMEYK---GA-----KIQLL 52

Query: 163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELR 214
           DLPG+IEGA  GKG GR  +   R   L++ V+D  A  P      ++ EL 
Sbjct: 53  DLPGIIEGASDGKGRGRQVIAVARTADLILIVLD--ATKPEGQREILERELE 102

The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. Length = 233

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 86.9 bits (216), Expect = 8e-21
 Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 15/146 (10%)

Query: 106 GLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164
            + G PN GKS+LL A+       ++  P TT  P          L          L D 
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEW---ELLPLGPV----VLIDT 53

Query: 165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP 224
           PGL E   LG+       +   R  L++ V+D+       +       LR        +P
Sbjct: 54  PGLDEEGGLGRERVEEARQVADRADLVLLVVDSD--LTPVEEEAKLGLLR-----ERGKP 106

Query: 225 FIVVLNKIDLPEARDRLQSLTEEILK 250
            ++VLNKIDL    +  + L E  L+
Sbjct: 107 VLLVLNKIDLVPESEEEELLRERKLE 132

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only]

 Score = 89.6 bits (223), Expect = 3e-20
 Identities = 47/111 (42%), Positives = 62/111 (55%), Gaps = 10/111 (9%)

Query: 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 162
           A V LVG P+ GKSTLL  +T+ K ++ADYPFTTL P  G L+     GA     +  L 
Sbjct: 64  ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYK---GA-----QIQLL 115

Query: 163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEEL 213
           DLPG+IEGA  G+G GR  L   R   L++ V+D       +    ++ EL
Sbjct: 116 DLPGIIEGASSGRGRGRQVLSVARNADLIIIVLD--VFEDPHHRDIIEREL 164

Length = 365

>gnl|CDD|240334 PTZ00258, PTZ00258, GTP-binding protein; Provisional

 Score = 86.9 bits (216), Expect = 2e-19
 Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 19/138 (13%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD-GDPTL--------GAEKY 155
           +G+VGLPN GKST   A+   +    ++PF T+ PN  R++  D                
Sbjct: 24  MGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIV 83

Query: 156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVND 205
            ++  + D+ GL++GA  G+GLG  FL H+R    + HV+ A  +          +PV D
Sbjct: 84  PAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRD 143

Query: 206 YRTVKEELRMYNPDYLER 223
              +  EL + + +++E+
Sbjct: 144 LEIISSELILKDLEFVEK 161

Length = 390

>gnl|CDD|236583 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed

 Score = 85.1 bits (212), Expect = 8e-19
 Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 27/132 (20%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-------RLDGDPTLGAEKYSS 157
            G+VGLPN GKSTL  A+T A  + A+YPF T+ PN+G       RLD    L AE    
Sbjct: 5   CGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLD---KL-AEIVKP 60

Query: 158 EATLA------DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDA----------AAEN 201
           +  +       D+ GL++GA  G+GLG  FL ++R    +VHV+               +
Sbjct: 61  KKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVD 120

Query: 202 PVNDYRTVKEEL 213
           P+ D  T+  EL
Sbjct: 121 PIRDIETINTEL 132

Length = 364

>gnl|CDD|206687 cd01900, YchF, YchF GTPase

 Score = 81.4 bits (202), Expect = 8e-18
 Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 27/134 (20%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-------RLDGDPTLGAEKYSS 157
           +G+VGLPN GKSTL  A+T +  + A+YPF T+ PN+G       RLD    L AE    
Sbjct: 1   IGIVGLPNVGKSTLFNALTKSNAEAANYPFCTIEPNVGIVPVPDERLD---KL-AEIVKP 56

Query: 158 E----ATL--ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------N 201
           +    AT+   D+ GL++GA  G+GLG  FL H+R    + HV+    +          +
Sbjct: 57  KKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVD 116

Query: 202 PVNDYRTVKEELRM 215
           PV D   +  EL +
Sbjct: 117 PVRDIEIINTELIL 130

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. Length = 274

>gnl|CDD|224009 COG1084, COG1084, Predicted GTPase [General function prediction only]

 Score = 70.8 bits (174), Expect = 7e-14
 Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 39/173 (22%)

Query: 109 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 168
           G PN GKS+L+  +T AKP++A YPFTT   ++G  +     G  +      + D PGL 
Sbjct: 175 GYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFE----RGYLRIQ----VIDTPGL- 225

Query: 169 EGAHLGKGLGRNF-------------LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM 215
                   L R               LRHL    +++ + D +         +++E++ +
Sbjct: 226 --------LDRPLEERNEIERQAILALRHLA--GVILFLFDPSETC----GYSLEEQISL 271

Query: 216 YNP--DYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSED 266
                +  + P +VV+NKID+ +  ++L+ +   +L+ G ++    +      
Sbjct: 272 LEEIKELFKAPIVVVINKIDIAD-EEKLEEIEASVLEEGGEEPLKISATKGCG 323

Length = 346

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 67.2 bits (165), Expect = 1e-13
 Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 47/174 (27%)

Query: 107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 166
           + G PN GKS+L+  +T AKP++A YPFTT    +G  D        ++     + D PG
Sbjct: 5   IAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFD----YKYLRWQ----VIDTPG 56

Query: 167 LIEGAHLGKGLGRNF-------------LRHLRRTRLLVHVIDAA------AENPVNDYR 207
           +         L R               L HLR    ++  ID +       E  ++ ++
Sbjct: 57  I---------LDRPLEERNTIEMQAITALAHLRAA--VLFFIDPSETCGYSIEEQLSLFK 105

Query: 208 TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETE 261
            +K            +P IVVLNKIDL    + L  + +E+ K G + +   T 
Sbjct: 106 EIKPL--------FNKPVIVVLNKIDLLT-EEDLSEIEKELEKEGEEVIKISTL 150

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 17/148 (11%)

Query: 106 GLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164
            +VG    GKS+LL A+   +    +D P TT  P++           +K   +  L D 
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVK------ELDKGKVKLVLVDT 54

Query: 165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER- 223
           PGL E   LG          LR   L++ V+D+       D  + ++   +      +  
Sbjct: 55  PGLDEFGGLG--REELARLLLRGADLILLVVDS------TDRESEEDAKLLILRRLRKEG 106

Query: 224 -PFIVVLNKIDLPEARDRLQSLTEEILK 250
            P I+V NKIDL E R+  + L  E L 
Sbjct: 107 IPIILVGNKIDLLEEREVEELLRLEELA 134

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|182934 PRK11058, PRK11058, GTPase HflX; Provisional

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 55/143 (38%), Positives = 68/143 (47%), Gaps = 17/143 (11%)

Query: 100 RVVAD---VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYS 156
           R+ AD   V LVG  NAGKSTL   IT A+   AD  F TL P L R+D           
Sbjct: 192 RIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV------- 244

Query: 157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR---LLVHVIDAAAENPVNDYRTVKEEL 213
            E  LAD  G I   HL   L   F   L+ TR   LL+HV+DAA      +   V   L
Sbjct: 245 GETVLADTVGFIR--HLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVL 302

Query: 214 RMYNPDYLERPFIVVLNKIDLPE 236
              +    E P ++V+NKID+ +
Sbjct: 303 EEIDAH--EIPTLLVMNKIDMLD 323

Length = 426

>gnl|CDD|234125 TIGR03156, GTP_HflX, GTP-binding protein HflX

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 55/155 (35%), Positives = 68/155 (43%), Gaps = 22/155 (14%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164
           V LVG  NAGKSTL  A+T A    AD  F TL P   RLD  P  G      E  L D 
Sbjct: 192 VALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLD-LPDGG------EVLLTDT 244

Query: 165 PGLIEGAHLGKGLGRNFLRHLRRTR---LLVHVIDAAAENPVNDYRTVK---EELRMYNP 218
            G I    L   L   F   L   R   LL+HV+DA+  +       V+   EEL     
Sbjct: 245 VGFIR--DLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA--- 299

Query: 219 DYLERPFIVVLNKIDL--PEARDRLQSLTEEILKI 251
              + P ++V NKIDL      +RL+    E + +
Sbjct: 300 --EDIPQLLVYNKIDLLDEPRIERLEEGYPEAVFV 332

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like) [Unknown function, General]. Length = 351

>gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only]

 Score = 61.9 bits (151), Expect = 9e-11
 Identities = 52/155 (33%), Positives = 65/155 (41%), Gaps = 21/155 (13%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSE--ATLA 162
           V LVG  NAGKSTL  A+T A   +AD  F TL         DPT    +        L 
Sbjct: 195 VALVGYTNAGKSTLFNALTGADVYVADQLFATL---------DPTTRRIELGDGRKVLLT 245

Query: 163 DLPGLIEGAHLGKGLGRNFLRHLRRT---RLLVHVIDAAAENPVNDYRTVKEELRMYNPD 219
           D  G I    L   L   F   L       LL+HV+DA+    +     V++ L     D
Sbjct: 246 DTVGFIR--DLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGAD 303

Query: 220 YLERPFIVVLNKIDL---PEARDRLQSLTEEILKI 251
             E P I+VLNKIDL    E    L+  +   + I
Sbjct: 304 --EIPIILVLNKIDLLEDEEILAELERGSPNPVFI 336

Length = 411

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 35/137 (25%), Positives = 50/137 (36%), Gaps = 18/137 (13%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLG--RLDGDPTLGAEKYSSEATL 161
           + +VG PN GKSTLL  +   K  I    P TT          DG              L
Sbjct: 4   IVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYK--------FNL 55

Query: 162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYL 221
            D  G  +   + +   R     LR   +++ V+D   E      + +            
Sbjct: 56  LDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLD-VEEILEKQTKEIIHHAES------ 108

Query: 222 ERPFIVVLNKIDLPEAR 238
             P I+V NKIDL +A+
Sbjct: 109 GVPIILVGNKIDLRDAK 125

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 17/146 (11%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163
           V ++G PN GKSTLL  +   K  I +    TT      R+ G  T GA    S+    D
Sbjct: 3   VAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN----RISGIHTTGA----SQIIFID 54

Query: 164 LPGLIEGAH-LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE 222
            PG  E  H L + + +     +    L++ V+D+   N   D   V  +L+      L+
Sbjct: 55  TPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNG--DGEFVLTKLQN-----LK 107

Query: 223 RPFIVVLNKIDLPEARDRLQSLTEEI 248
           RP ++  NK+D       L  + +  
Sbjct: 108 RPVVLTRNKLDNKFKDKLLPLIDKYA 133

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270

>gnl|CDD|206666 cd01878, HflX, HflX GTPase family

 Score = 57.1 bits (139), Expect = 8e-10
 Identities = 54/155 (34%), Positives = 69/155 (44%), Gaps = 21/155 (13%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSS--EATLA 162
           V LVG  NAGKSTL  A+T A     D  F TL         DPT    K     E  L 
Sbjct: 44  VALVGYTNAGKSTLFNALTGADVLAEDQLFATL---------DPTTRRIKLPGGREVLLT 94

Query: 163 DLPGLIEGAHLGKGLGRNF---LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD 219
           D  G I    L   L   F   L  +    LL+HV+DA+  +      TV+E L+     
Sbjct: 95  DTVGFIR--DLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDREEQIETVEEVLK--ELG 150

Query: 220 YLERPFIVVLNKIDL---PEARDRLQSLTEEILKI 251
             + P I+VLNKIDL    E  +RL++   + + I
Sbjct: 151 ADDIPIILVLNKIDLLDDEELEERLRAGRPDAVFI 185

HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 16/148 (10%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163
           V ++G PN GKSTLL A+   K  I +  P TT     G +  D        +++    D
Sbjct: 9   VAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--------NAQIIFVD 60

Query: 164 LPGLIEGAH-LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE 222
            PG+ +  H LG+ + +     L+   L++ V+DA       D   + E+L+       +
Sbjct: 61  TPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD-EFILEQLK-----KTK 114

Query: 223 RPFIVVLNKIDLPEARDRLQSLTEEILK 250
            P I+V+NKID  + +  L  L   + K
Sbjct: 115 TPVILVVNKIDKVKPKTVLLKLIAFLKK 142

Length = 298

>gnl|CDD|129200 TIGR00092, TIGR00092, GTP-binding protein YchF

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 46/128 (35%), Positives = 65/128 (50%), Gaps = 20/128 (15%)

Query: 106 GLVGLPNAGKSTLLAAITHA-KPDIADYPFTTLMPNLGRLD-GDPTLG--AEKYSSEATL 161
           G+VGLPN GKSTL AA T+    + A+ PFTT+ PN G ++  DP L   A     E   
Sbjct: 6   GIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVP 65

Query: 162 A------DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV----------IDAAAENPVND 205
                  D+ GL+ GA  G+GLG  FL ++R   ++ HV               ++P +D
Sbjct: 66  PTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDD 125

Query: 206 YRTVKEEL 213
           +  + EEL
Sbjct: 126 FEIIDEEL 133

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor [Unknown function, General]. Length = 368

>gnl|CDD|206726 cd04163, Era, E

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 30/155 (19%)

Query: 105 VGLVGLPNAGKSTLL-------AAITHAKPDIADYPFTTLMPNLGRL-DGDPTLGAEKYS 156
           V ++G PN GKSTLL        +I   KP       TT     G   D D         
Sbjct: 6   VAIIGRPNVGKSTLLNALVGQKISIVSPKPQ------TTRNRIRGIYTDDD--------- 50

Query: 157 SEATLADLPGLIEGAH-LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM 215
           ++    D PG+ +    LG+ + +     L+   L++ V+DA+      D   + E L+ 
Sbjct: 51  AQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEWIGEGD-EFILELLK- 108

Query: 216 YNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK 250
                 + P I+VLNKIDL + ++ L  L E++ +
Sbjct: 109 ----KSKTPVILVLNKIDLVKDKEDLLPLLEKLKE 139

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 51/148 (34%), Positives = 70/148 (47%), Gaps = 22/148 (14%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIA---DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 161
           +G+ G  NAGKS+L+ A+T    DIA   D P TT  P    ++  P LG         L
Sbjct: 9   IGIFGRRNAGKSSLINALT--GQDIAIVSDVPGTTTDPVYKAMELLP-LGP------VVL 59

Query: 162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYL 221
            D  GL +   LG+         L +T L + V+DA    P      + EEL+       
Sbjct: 60  IDTAGLDDEGELGELRVEKTREVLDKTDLALLVVDAGVG-PGEYELELIEELK------- 111

Query: 222 ER--PFIVVLNKIDLPEARDRLQSLTEE 247
           ER  P+IVV+NKIDL E    L+ L ++
Sbjct: 112 ERKIPYIVVINKIDLGEESAELEKLEKK 139

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score = 48.9 bits (118), Expect = 1e-06
 Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 28/156 (17%)

Query: 105 VGLVGLPNAGKSTLL-------AAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSS 157
           V +VG PN GKSTLL        +I   KP       TT     G +  D          
Sbjct: 8   VAIVGRPNVGKSTLLNALVGQKISIVSPKPQ------TTRHRIRGIVTEDDA-------- 53

Query: 158 EATLADLPGLIEGAH-LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY 216
           +    D PG+ +    L + + +     L+   L++ V+DA  E        + E+L+  
Sbjct: 54  QIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDAD-EKIGPGDEFILEKLKKV 112

Query: 217 NPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG 252
                  P I+VLNKIDL + ++ L  L EE+ ++ 
Sbjct: 113 K-----TPVILVLNKIDLVKDKEELLPLLEELSELM 143

Length = 292

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 21/142 (14%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLG-AEKYSSEATLA 162
           V +VG PN GKSTL   +T  +  I +D P  T      R   D   G AE    E  L 
Sbjct: 6   VAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVT------R---DRIYGDAEWLGREFILI 56

Query: 163 DLPGLIEGA--HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPD 219
           D  GL +G    L + +    L  +    +++ V+D      +      + + LR     
Sbjct: 57  DTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREG--ITPADEEIAKILR----- 109

Query: 220 YLERPFIVVLNKIDLPEARDRL 241
             ++P I+V+NKID  +A +  
Sbjct: 110 RSKKPVILVVNKIDNLKAEELA 131

Length = 444

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 25/155 (16%)

Query: 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163
            V LVG PN GK+TL  A+T A   + ++P  T+    G+L        +    E  + D
Sbjct: 5   TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKL--------KYKGHEIEIVD 56

Query: 164 LPGL--IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDY 220
           LPG   +      + + R+FL    +  L+V+V+DA   N   N Y T+  +L       
Sbjct: 57  LPGTYSLTAYSEDEKVARDFLL-EGKPDLIVNVVDAT--NLERNLYLTL--QLLE----- 106

Query: 221 LERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGC 253
           L  P I+ LN ID  EA+ R   +  E L   +G 
Sbjct: 107 LGIPMILALNMID--EAKKRGIRIDIEKLSKLLGV 139

Length = 653

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 45.7 bits (108), Expect = 7e-06
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 16/145 (11%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164
           + ++G    GK+TLL  +   +     YP T    +  +     T+   + + +  L D 
Sbjct: 8   IVVLGDGGVGKTTLLNRLVGDEFPE-GYPPTIGNLDPAK-----TIEPYRRNIKLQLWDT 61

Query: 165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLER 223
            G  E   L     R           ++ V D+      ++      EELR   PD +  
Sbjct: 62  AGQEEYRSLRPEYYRG-------ANGILIVYDSTLRESSDELTEEWLEELRELAPDDV-- 112

Query: 224 PFIVVLNKIDLPEARDRLQSLTEEI 248
           P ++V NKIDL + +   + +  ++
Sbjct: 113 PILLVGNKIDLFDEQSSSEEILNQL 137

Length = 219

>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 38/159 (23%), Positives = 59/159 (37%), Gaps = 33/159 (20%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADY---PFTTLMPNLGRLDGDPTLGAEKYSSEATL 161
           V   G  N GKS+L+ A+T+ K  +A     P  T + N   +                L
Sbjct: 2   VAFAGRSNVGKSSLINALTNRK-KLARTSKTPGRTQLINFFNVGDK-----------FRL 49

Query: 162 ADLPGLIEGAHLGK-------GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELR 214
            DLPG    A + K        L   +L +    + +V +IDA        +     +L 
Sbjct: 50  VDLPGYG-YAKVSKEVREKWGKLIEEYLENRENLKGVVLLIDA-------RHGPTPIDLE 101

Query: 215 MYN-PDYLERPFIVVLNKIDL--PEARDRLQSLTEEILK 250
           M    + L  PF++VL K D        ++    +E L 
Sbjct: 102 MLEFLEELGIPFLIVLTKADKLKKSELAKVLKKIKEELN 140

The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 27/139 (19%)

Query: 107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 166
           LVG PN GK+TL  A+T A+  + ++P  T+    G          +    E  + DLPG
Sbjct: 2   LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGEF--------KLGGKEIEIVDLPG 53

Query: 167 L--IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRT--VKEELRMYNPDYL 221
              +      + + R+FL       L+V+V+DA   N   N Y T  + E         L
Sbjct: 54  TYSLTPYSEDEKVARDFLLG-EEPDLIVNVVDAT--NLERNLYLTLQLLE---------L 101

Query: 222 ERPFIVVLNKIDLPEARDR 240
             P +V LN ID  EA  R
Sbjct: 102 GLPVVVALNMID--EAEKR 118

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 23/139 (16%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164
           + LVG PN GK+TL  A+T A+  + ++P  T+    G               E  + DL
Sbjct: 3   IALVGNPNVGKTTLFNALTGARQHVGNWPGVTVEKKEGTFKYKGY--------EIEIVDL 54

Query: 165 PGL--IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV-NDYRTVKEELRMYNPDYL 221
           PG   +      + + R++L    +  ++++V+DA   N   N Y T+  +L       L
Sbjct: 55  PGTYSLSPYSEEEKVARDYLLE-EKPDVIINVVDAT--NLERNLYLTL--QLLE-----L 104

Query: 222 ERPFIVVLNKIDLPEARDR 240
             P +V LN +D  EA  +
Sbjct: 105 GIPVVVALNMMD--EAEKK 121

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 42.4 bits (101), Expect = 2e-04
 Identities = 46/177 (25%), Positives = 68/177 (38%), Gaps = 66/177 (37%)

Query: 99  LRVVADVGLVGLPNAGKSTLLAAITHAKPDIA---DYPFTTLMPNLGR--------LDGD 147
           L+VV    + G PN GKS+LL A+     + A   D   TT      R        LDG 
Sbjct: 216 LKVV----IAGRPNVGKSSLLNAL--LGEERAIVTDIAGTT------RDVIEEHINLDGI 263

Query: 148 PTLGAEKYSSEATLADLPGL------IEGAHLGKGLGRNFLRHLRRTR-------LLVHV 194
           P            L D  G+      +E   +G          + R+R       L++ V
Sbjct: 264 PL----------RLIDTAGIRETDDEVE--KIG----------IERSREAIEEADLVLLV 301

Query: 195 IDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI 251
           +DA+      D     +E+     D   +P IVVLNK DL    D  +   + +++I
Sbjct: 302 LDASEPLTEED-----DEILEELKD---KPVIVVLNKADLTGEIDLEEENGKPVIRI 350

Length = 449

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 55/180 (30%)

Query: 76  MRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIA---DY 132
           +  + D++L   + G+      ILR    V ++G PN GKS+LL A+     D A   D 
Sbjct: 197 LIAELDELLATAKQGK------ILREGLKVVIIGRPNVGKSSLLNALLGR--DRAIVTDI 248

Query: 133 PFTTLMPNLGR--------LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 184
             TT      R        L+G P            L D  G+ E   + + +G      
Sbjct: 249 AGTT------RDVIEEDINLNGIPVR----------LVDTAGIRETDDVVERIG------ 286

Query: 185 LRRTR-------LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237
           + R +       L++ V+DA+           KE+L +      ++P IVVLNK DL   
Sbjct: 287 IERAKKAIEEADLVLFVLDASQPLD-------KEDLALIELLPKKKPIIVVLNKADLVSK 339

Length = 454

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 36/142 (25%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG-------AEKYSS 157
           V L+GL +AGKSTLL  + HA+        TT+          PT+G        EK+ S
Sbjct: 2   VLLLGLDSAGKSTLLYKLKHAE------LVTTI----------PTVGFNVEMLQLEKHLS 45

Query: 158 EATLADLPGLIEGAHLGKGLGRNFLRH-LRRTRLLVHVIDAAAENPVND-YRTVKEELRM 215
             T+ D+         G+   R   +  L  T  LV+V+D++ E  +++  + +K  L+ 
Sbjct: 46  -LTVWDVG--------GQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILK- 95

Query: 216 YNPDYLERPFIVVLNKIDLPEA 237
            N      P +++ NK DLP A
Sbjct: 96  -NEHIKGVPVVLLANKQDLPGA 116

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only]

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 35/140 (25%), Positives = 50/140 (35%), Gaps = 31/140 (22%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIA---DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 161
           +   G  N GKS+L+ A+T+ K ++A     P  T + N   +D            E  L
Sbjct: 27  IAFAGRSNVGKSSLINALTNQK-NLARTSKTPGRTQLINFFEVD-----------DELRL 74

Query: 162 ADLPG-------LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELR 214
            DLPG               K +   +L      + +V +IDA              +  
Sbjct: 75  VDLPGYGYAKVPKEVKEKWKKLIEE-YLEKRANLKGVVLLIDARHP-------PKDLDRE 126

Query: 215 MYN-PDYLERPFIVVLNKID 233
           M      L  P IVVL K D
Sbjct: 127 MIEFLLELGIPVIVVLTKAD 146

Length = 200

>gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 37/163 (22%), Positives = 57/163 (34%), Gaps = 30/163 (18%)

Query: 107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDG--DPTLGAEKYSSEATLA-- 162
           L G   +GKS++   + H        PF TL     RL+   D       +    TL   
Sbjct: 4   LXGRRRSGKSSIRKVVFHNYS-----PFDTL-----RLESTIDVEHSHLSFLGNXTLNLW 53

Query: 163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDY 220
           D PG        K     F    +    L++VID   E    +       ++    NPD 
Sbjct: 54  DCPGQDVFFEPTKDKEHIF----QXVGALIYVIDVQDEYLKAITILAKALKQAYKVNPDA 109

Query: 221 LERPFIVVLNKIDLPE-------ARDRLQSLTEEILKIGCDKV 256
                 V+++K+D           RD  Q L+E + + G +  
Sbjct: 110 ---NIEVLIHKVDGLSLDKKEELQRDIXQRLSETLSEFGLEFP 149

Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 30/159 (18%), Positives = 51/159 (32%), Gaps = 30/159 (18%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA-- 162
           VG++G  + GK+TL  ++ +    I              LD          + +  +   
Sbjct: 2   VGVIGHVDHGKTTLTGSLLYQTGAIDR----RGTRKETFLDTLKEERERGITIKTGVVEF 57

Query: 163 ----------DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEE 212
                     D PG     H  +   +  +R L +    + V+D A E      R     
Sbjct: 58  EWPKRRINFIDTPG-----H--EDFSKETVRGLAQADGALLVVD-ANEGVEPQTREHLNI 109

Query: 213 LRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI 251
                      P IV +NKID     +    +  EI ++
Sbjct: 110 ALAGGL-----PIIVAVNKIDRV-GEEDFDEVLREIKEL 142

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 39.0 bits (92), Expect = 8e-04
 Identities = 44/161 (27%), Positives = 60/161 (37%), Gaps = 54/161 (33%)

Query: 99  LRVVADVGLVGLPNAGKSTLLAAITHAKPDIA---DYPFTTLMPNLGR--------LDGD 147
           ++VV    + G PN GKS+LL A+  A  D A   D   TT      R        L G 
Sbjct: 4   IKVV----IAGKPNVGKSSLLNAL--AGRDRAIVSDIAGTT------RDVIEEEIDLGGI 51

Query: 148 PTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR-------LLVHVIDAAAE 200
           P            L D  GL E     + +G      + R R       L++ V+DA+  
Sbjct: 52  PV----------RLIDTAGLRETEDEIEKIG------IERAREAIEEADLVLLVVDASEG 95

Query: 201 NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL 241
                     EE         ++P IVVLNK DL    + +
Sbjct: 96  LD--------EEDLEILELPAKKPVIVVLNKSDLLSDAEGI 128

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 42/153 (27%)

Query: 107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEA------- 159
           ++GL  AGK+T+L  +             T +P +G            ++ E        
Sbjct: 4   MLGLDGAGKTTILYKL-------KLGEVVTTIPTIG------------FNVETVEYKNVK 44

Query: 160 -TLADLPGLIEGAHLGKGLGRNFLRHL-RRTRLLVHVIDAAAENPVNDYRTVKEEL-RMY 216
            T+ D+     G   G+   R   +H    T  L+ V+D++    + +    K EL ++ 
Sbjct: 45  FTVWDV-----G---GQDKIRPLWKHYYENTDGLIFVVDSSDRERIEE---AKNELHKLL 93

Query: 217 N-PDYLERPFIVVLNKIDLPEARDRLQSLTEEI 248
           N  +    P +++ NK DLP A      L E +
Sbjct: 94  NEEELKGAPLLILANKQDLPGALT-ESELIELL 125

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 27/135 (20%)

Query: 107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSS-EATLADLP 165
           ++GL NAGK+T+L  +   K         T +P +G       +    Y + + T+ D+ 
Sbjct: 19  ILGLDNAGKTTILYKL---KLG----EIVTTIPTIG-----FNVETVTYKNVKFTVWDVG 66

Query: 166 GLIEGAHLGKGLGRNFLRH-LRRTRLLVHVIDAAAENPVNDYRTVKEEL-RMYNPDYLER 223
           G            R   R+    T  ++ V+D+A  + + +    KEEL  + N + L  
Sbjct: 67  GQESL--------RPLWRNYFPNTDAVIFVVDSADRDRIEE---AKEELHALLNEEELAD 115

Query: 224 -PFIVVLNKIDLPEA 237
            P +++ NK DLP A
Sbjct: 116 APLLILANKQDLPGA 130

Pfam combines a number of different Prosite families together. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
COG0536	369	Obg Predicted GTPase [General function prediction	100.0
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	100.0
PRK12299	335	obgE GTPase CgtA; Reviewed	100.0
PRK12297	424	obgE GTPase CgtA; Reviewed	100.0
PRK12296	500	obgE GTPase CgtA; Reviewed	100.0
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	100.0
PRK12298	390	obgE GTPase CgtA; Reviewed	100.0
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
COG2262	411	HflX GTPases [General function prediction only]	99.92
PRK11058	426	GTPase HflX; Provisional	99.92
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
COG1160	444	Predicted GTPases [General function prediction onl	99.9
COG1084	346	Predicted GTPase [General function prediction only	99.9
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.9
COG1159	298	Era GTPase [General function prediction only]	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.89
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.89
COG1163	365	DRG Predicted GTPase [General function prediction	99.89
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.89
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.88
COG0486	454	ThdF Predicted GTPase [General function prediction	99.88
PRK09602	396	translation-associated GTPase; Reviewed	99.87
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.87
PRK15494	339	era GTPase Era; Provisional	99.87
PTZ00258	390	GTP-binding protein; Provisional	99.87
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.86
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.86
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.86
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.85
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.85
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.85
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.85
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.85
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.84
PRK00089	292	era GTPase Era; Reviewed	99.84
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.84
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.84
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.84
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.84
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.84
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.84
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.84
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.84
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.84
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.84
PRK09601	364	GTP-binding protein YchF; Reviewed	99.84
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.84
PRK03003	472	GTP-binding protein Der; Reviewed	99.84
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.84
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.84
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.84
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.84
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.84
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.83
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.83
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.83
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.83
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.83
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.83
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.83
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.83
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.83
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.83
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.83
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.83
PRK03003	472	GTP-binding protein Der; Reviewed	99.83
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.83
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.82
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.82
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.82
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.82
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.82
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.82
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.82
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.82
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.82
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.82
PRK00093	435	GTP-binding protein Der; Reviewed	99.82
PLN00223	181	ADP-ribosylation factor; Provisional	99.82
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.82
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.82
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.82
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.82
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.82
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.82
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.82
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.82
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.82
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.82
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.82
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.82
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.82
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.82
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.82
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.81
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.81
PRK04213	201	GTP-binding protein; Provisional	99.81
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.81
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.81
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.81
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.81
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.81
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.81
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.81
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.81
PLN03110	216	Rab GTPase; Provisional	99.81
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.81
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.81
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.81
PTZ00369	189	Ras-like protein; Provisional	99.81
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.81
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.81
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.81
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.81
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.81
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.81
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.8
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.8
PLN03118	211	Rab family protein; Provisional	99.8
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.8
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.8
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.8
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.8
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.8
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.8
PRK00093	435	GTP-binding protein Der; Reviewed	99.8
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.8
KOG0394	210	consensus Ras-related GTPase [General function pre	99.8
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.8
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.8
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.8
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.79
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.79
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.79
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.79
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.79
PTZ00133	182	ADP-ribosylation factor; Provisional	99.79
PLN03108	210	Rab family protein; Provisional	99.79
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.79
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.79
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.79
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.79
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.79
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.79
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.79
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.79
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.78
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.78
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.78
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.78
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.78
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.78
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.78
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.77
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.77
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	99.77
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.77
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.77
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.77
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.77
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.77
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.77
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.77
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.77
COG0218	200	Predicted GTPase [General function prediction only	99.77
cd00881	189	GTP_translation_factor GTP translation factor fami	99.76
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.76
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.76
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.75
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.74
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.74
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.74
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.73
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.73
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.72
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.72
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.72
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.72
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.72
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.71
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	99.71
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.71
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.71
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.71
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.71
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.7
PRK05306	787	infB translation initiation factor IF-2; Validated	99.7
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.69
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.69
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.69
CHL00189	742	infB translation initiation factor 2; Provisional	99.68
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.68
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.67
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.67
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.67
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.66
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.66
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.66
KOG0410	410	consensus Predicted GTP binding protein [General f	99.65
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.65
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.65
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.64
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.64
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.64
PLN00023	334	GTP-binding protein; Provisional	99.63
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.63
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.62
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.62
PRK12317	425	elongation factor 1-alpha; Reviewed	99.62
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.61
PRK05433	600	GTP-binding protein LepA; Provisional	99.6
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.6
COG3596	296	Predicted GTPase [General function prediction only	99.59
PRK09866	741	hypothetical protein; Provisional	99.59
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.58
KOG0395	196	consensus Ras-related GTPase [General function pre	99.58
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.57
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.57
PRK10218	607	GTP-binding protein; Provisional	99.57
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.57
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.56
PRK04004	586	translation initiation factor IF-2; Validated	99.56
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.56
COG1100	219	GTPase SAR1 and related small G proteins [General	99.55
CHL00071	409	tufA elongation factor Tu	99.55
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.54
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.54
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.54
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.54
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.53
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.53
PRK12736	394	elongation factor Tu; Reviewed	99.53
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.53
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.52
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.52
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.51
PRK12735	396	elongation factor Tu; Reviewed	99.51
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.5
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.5
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.49
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.49
COG2229	187	Predicted GTPase [General function prediction only	99.49
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.48
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.48
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.47
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.47
PRK00049	396	elongation factor Tu; Reviewed	99.47
PLN03127	447	Elongation factor Tu; Provisional	99.47
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.47
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.46
KOG1145	683	consensus Mitochondrial translation initiation fac	99.46
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.45
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.45
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.43
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.43
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.43
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.43
PLN03126	478	Elongation factor Tu; Provisional	99.43
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.42
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.42
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.42
PRK00007	693	elongation factor G; Reviewed	99.42
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.42
PRK12739	691	elongation factor G; Reviewed	99.42
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.41
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.39
PRK13768	253	GTPase; Provisional	99.37
PRK13351	687	elongation factor G; Reviewed	99.37
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.36
PTZ00141	446	elongation factor 1- alpha; Provisional	99.36
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.35
KOG0090	238	consensus Signal recognition particle receptor, be	99.35
PTZ00099	176	rab6; Provisional	99.35
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.34
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.32
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.32
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	99.31
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.3
PF01018	156	GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several pr	99.3
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.26
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.26
PLN00043	447	elongation factor 1-alpha; Provisional	99.25
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.25
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.24
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.23
PTZ00416	836	elongation factor 2; Provisional	99.23
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.22
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.21
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.21
PRK12740	668	elongation factor G; Reviewed	99.15
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.13
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.12
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.11
PRK07560	731	elongation factor EF-2; Reviewed	99.1
PRK14845	1049	translation initiation factor IF-2; Provisional	99.09
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.08
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.07
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.06
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.05
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.0
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.99
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.97
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.95
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.93
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.93
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.91
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	98.91
COG1161	322	Predicted GTPases [General function prediction onl	98.91
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.88
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.88
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.85
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.84
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.84
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.84
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.83
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.83
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.83
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.79
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	98.79
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.79
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.78
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.78
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.78
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.77
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.77
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.73
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.73
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.72
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.7
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.69
KOG1673	205	consensus Ras GTPases [General function prediction	98.69
KOG2486	320	consensus Predicted GTPase [General function predi	98.67
PRK13796	365	GTPase YqeH; Provisional	98.66
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.66
PRK12288	347	GTPase RsgA; Reviewed	98.58
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.56
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.54
PRK12289	352	GTPase RsgA; Reviewed	98.52
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.46
cd03112	158	CobW_like The function of this protein family is u	98.46
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.45
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.45
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.44
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.39
KOG2484	435	consensus GTPase [General function prediction only	98.34
PRK00098	298	GTPase RsgA; Reviewed	98.33
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.31
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.31
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.24
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.24
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.21
KOG2423	572	consensus Nucleolar GTPase [General function predi	98.21
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.2
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.2
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.2
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.17
COG1162	301	Predicted GTPases [General function prediction onl	98.14
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.14
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.13
PRK10416	318	signal recognition particle-docking protein FtsY;	98.13
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.12
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.12
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.12
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.11
PRK00098	298	GTPase RsgA; Reviewed	98.06
PRK12289	352	GTPase RsgA; Reviewed	98.06
KOG1533	290	consensus Predicted GTPase [General function predi	98.02
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.02
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.01
KOG0460	449	consensus Mitochondrial translation elongation fac	97.99
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.99
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	97.99
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.98
cd03110	179	Fer4_NifH_child This protein family's function is	97.97
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.96
cd03114	148	ArgK-like The function of this protein family is u	97.95
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.94
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.92
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.9
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.89
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.89
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.89
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.86
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	97.82
PRK14974	336	cell division protein FtsY; Provisional	97.81
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.79
COG0523	323	Putative GTPases (G3E family) [General function pr	97.79
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.78
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.75
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.75
PRK12288	347	GTPase RsgA; Reviewed	97.74
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.71
KOG0082	354	consensus G-protein alpha subunit (small G protein	97.69
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.69
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.69
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.67
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	97.67
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.64
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.62
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.6
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.58
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.58
KOG1143	591	consensus Predicted translation elongation factor	97.58
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	97.58
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.55
PRK01889	356	GTPase RsgA; Reviewed	97.53
cd03111	106	CpaE_like This protein family consists of proteins	97.51
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.49
PRK13796	365	GTPase YqeH; Provisional	97.49
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.46
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.45
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.43
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.42
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.41
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.41
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.31
COG3523	1188	IcmF Type VI protein secretion system component Va	97.28
PF00004	132	AAA: ATPase family associated with various cellula	97.27
PRK14737	186	gmk guanylate kinase; Provisional	97.21
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.21
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	97.17
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.14
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.13
PRK10867	433	signal recognition particle protein; Provisional	97.08
cd02036	179	MinD Bacterial cell division requires the formatio	97.06
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.05
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.03
PRK01889	356	GTPase RsgA; Reviewed	97.0
TIGR00959	428	ffh signal recognition particle protein. This mode	96.99
KOG2749	415	consensus mRNA cleavage and polyadenylation factor	96.94
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.92
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.91
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.9
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	96.89
PRK14738	206	gmk guanylate kinase; Provisional	96.83
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.82
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.82
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	96.77
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	96.71
KOG2484	435	consensus GTPase [General function prediction only	96.71
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.7
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.68
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.68
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.66
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.66
PRK00300	205	gmk guanylate kinase; Provisional	96.65
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.65
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.64
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.63
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.62
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.61
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.61
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.59
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.59
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	96.59
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.58
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.57
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.57
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.57
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.56
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.56
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	96.56
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.56
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.55
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.55
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.55
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.54
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.53
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.53
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.52
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.52
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.51
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.51
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.5
cd03116	159	MobB Molybdenum is an essential trace element in t	96.5
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.5
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.5
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.48
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.48
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.48
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.48
PRK10908	222	cell division protein FtsE; Provisional	96.48
COG4559	259	ABC-type hemin transport system, ATPase component	96.48
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	96.47
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.46
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.46
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	96.44
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.44
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.43
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.42
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.42
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.42
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.42
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.4
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.4
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.39
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.39
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	96.39
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.38

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=100.00  E-value=5.5e-52  Score=371.28  Aligned_cols=238  Identities=47%  Similarity=0.763  Sum_probs=213.6

Q ss_pred             eee-cceEEEcC-CCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeehhh
Q 021615           20 IHV-TGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLEL   97 (310)
Q Consensus        20 ~~~-~g~~~~~~-~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~   97 (310)
                      +.| +||+|+|. ++++++||++++|++++|+||.||+||++|+++.             +++|+.+++|.+||++.+.+
T Consensus        88 i~VP~GT~v~d~~t~e~i~Dl~~~gq~~~~akGG~GG~GN~~Fks~~-------------nrAP~~a~~G~~Ge~r~v~L  154 (369)
T COG0536          88 IKVPVGTVVRDEDTGELLADLTEHGQRFLVAKGGRGGLGNAHFKSSV-------------NRAPRFATPGEPGEERDLRL  154 (369)
T ss_pred             EEcCCCCEEEeCCCCeEehhhccCCcEEEEEcCCCCCccchhhcCcc-------------cCCcccCCCCCCCceEEEEE
Confidence            444 89999995 6999999999999999999999999999987643             24788999999999999999


Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      |||.+++|++||.||||||||+++++.++|+|++|||||+.|+.|.+....       ...|+++|+||++++|+++.|+
T Consensus       155 ELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-------~~sfv~ADIPGLIEGAs~G~GL  227 (369)
T COG0536         155 ELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-------GESFVVADIPGLIEGASEGVGL  227 (369)
T ss_pred             EEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-------CCcEEEecCcccccccccCCCc
Confidence            999999999999999999999999999999999999999999999998632       2379999999999999999999


Q ss_pred             HHHHHHHhhhcCEEEEecccCCC---CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCC
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD  254 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~---~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~  254 (310)
                      +..|++|+++|.+++||+|++..   ++.++++.+..||..|.+.+.++|.++|+||+|+....+..+.+.+.+....-.
T Consensus       228 G~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~  307 (369)
T COG0536         228 GLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGW  307 (369)
T ss_pred             cHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999874   479999999999999999999999999999999887777788888888754222


Q ss_pred             c----cccCccCCHHHHHHHHhhccCC
Q 021615          255 K----VTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       255 ~----~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      .    +|+.++.|++++...+.....+
T Consensus       308 ~~~~~ISa~t~~g~~~L~~~~~~~l~~  334 (369)
T COG0536         308 EVFYLISALTREGLDELLRALAELLEE  334 (369)
T ss_pred             CcceeeehhcccCHHHHHHHHHHHHHH
Confidence            2    8999999999999887665443

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=100.00  E-value=2.4e-48  Score=343.85  Aligned_cols=230  Identities=44%  Similarity=0.706  Sum_probs=208.4

Q ss_pred             cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeehhhhhhc
Q 021615           23 TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRV  101 (310)
Q Consensus        23 ~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~l~~  101 (310)
                      +||+|+| +.+.+++||+++++++++||||.||+||.+|..           |..  ..|..+++|..|+.+.+.++||.
T Consensus       129 ~Gt~v~d~~~~~~v~el~~~~~~~i~arGG~GG~gn~~fls-----------~~~--r~p~~~~~G~~G~e~~~~lELKs  195 (366)
T KOG1489|consen  129 VGTVVKDIEQGKLVAELTKEGDRVIAARGGEGGKGNKFFLS-----------NEN--RSPKFSKPGLNGEERVIELELKS  195 (366)
T ss_pred             CccEEeecccchhHHHhccCCcEEEEeecCCCCccceeecc-----------ccc--cCcccccCCCCCceEEEEEEeee
Confidence            8999999 789999999999999999999999999977643           222  36788999999999999999999


Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      +++|++||+||||||||+|+|+.++|++++|+|||+.|+++++.++..       ..+.++|+||+++++++++|++..|
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-------~q~tVADiPGiI~GAh~nkGlG~~F  268 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-------SQITVADIPGIIEGAHMNKGLGYKF  268 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-------ceeEeccCccccccccccCcccHHH
Confidence            999999999999999999999999999999999999999999987754       1489999999999999999999999


Q ss_pred             HHHhhhcCEEEEecccCCC---CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhcCCCccc
Q 021615          182 LRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIGCDKVT  257 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~---~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~g~~~~s  257 (310)
                      ++|+++|+.++||+|++..   .++++++.++.||+.|...+.++|.++|+||+|++++++. ++++.+.+..-.+.++|
T Consensus       269 LrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvs  348 (366)
T KOG1489|consen  269 LRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVS  348 (366)
T ss_pred             HHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEee
Confidence            9999999999999999998   9999999999999999999999999999999999755433 36676666655578899


Q ss_pred             cCccCCHHHHHHHHh
Q 021615          258 SETELSSEDAVKSLS  272 (310)
Q Consensus       258 a~~~~gi~~l~~~l~  272 (310)
                      |+.++|++++...|-
T Consensus       349 A~~~egl~~ll~~lr  363 (366)
T KOG1489|consen  349 AKSGEGLEELLNGLR  363 (366)
T ss_pred             eccccchHHHHHHHh
Confidence            999999999988763

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=100.00  E-value=4e-47  Score=351.71  Aligned_cols=238  Identities=42%  Similarity=0.703  Sum_probs=205.8

Q ss_pred             cceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeeh
Q 021615           18 MHIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSL   95 (310)
Q Consensus        18 ~~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~   95 (310)
                      +.|.| +||+|+| +++++++||.+++|++++|+||.||+||.+|+++.             ++.|+.++.|++||++.+
T Consensus        85 ~~~~vp~gt~v~~~~~~~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~~-------------~~~p~~~~~g~~g~~~~~  151 (335)
T PRK12299         85 LVLKVPVGTQIYDADTGELIADLTEHGQRFLVAKGGKGGLGNAHFKSST-------------NRAPRYATPGEPGEERWL  151 (335)
T ss_pred             eEEEeCCCCEEEECCCCcEEEEcCCCCcEEEEecCCCCcCCchhhcccc-------------CCCCccccCCCCCcEEEE
Confidence            34555 8999998 67899999999999999999999999999886532             236789999999999999


Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  175 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~  175 (310)
                      .++||.+++|+|||.||||||||+|+|+++++.+++|||||+.|+.+.+.+...       .++++|||||+++.++...
T Consensus       152 ~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~-------~~~~i~D~PGli~ga~~~~  224 (335)
T PRK12299        152 RLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY-------KSFVIADIPGLIEGASEGA  224 (335)
T ss_pred             EEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC-------cEEEEEeCCCccCCCCccc
Confidence            999999999999999999999999999999999999999999999999876321       2699999999999999888


Q ss_pred             hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHH-HHHHHHh--cC
Q 021615          176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS-LTEEILK--IG  252 (310)
Q Consensus       176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~-l~~~l~~--~g  252 (310)
                      +++..|++|+++|++++||+|+++.+++++++.|.++|..|.+.+.++|+++|+||+|+.+..+.... +...+..  ..
T Consensus       225 gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~  304 (335)
T PRK12299        225 GLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGP  304 (335)
T ss_pred             cHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999877899999999999998776678999999999999765432222 2222233  34


Q ss_pred             CCccccCccCCHHHHHHHHhhcc
Q 021615          253 CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +..+||+++.|+++++..+....
T Consensus       305 i~~iSAktg~GI~eL~~~L~~~l  327 (335)
T PRK12299        305 VFLISAVTGEGLDELLRALWELL  327 (335)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            56689999999999999987654

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=100.00  E-value=3.3e-46  Score=353.79  Aligned_cols=239  Identities=46%  Similarity=0.775  Sum_probs=207.3

Q ss_pred             cceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeeh
Q 021615           18 MHIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSL   95 (310)
Q Consensus        18 ~~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~   95 (310)
                      +.|.| +||+|+| +++++++||.+++|++++||||.||+||++|.++.+             ..|+.++.|.+||++.+
T Consensus        85 ~~i~vP~Gt~v~~~~~~~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s~~-------------~~p~~~~~G~~ge~~~~  151 (424)
T PRK12297         85 LIIKVPVGTVVKDAETGEVIADLVEPGQEVVVAKGGRGGRGNAHFATSTN-------------QAPRIAENGEPGEEREL  151 (424)
T ss_pred             eEEecCCCCEEEECCCCcEEeeeccCCcEEEEECCCCCCcCchhhcCCCC-------------CCCCcCCCCCCCeEeEE
Confidence            34555 8999999 689999999999999999999999999998875432             36788999999999999


Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  175 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~  175 (310)
                      .++||.+++|+|||.||||||||+|+|+++++++++|||||+.|+.+.+....       ...+++|||||+++.++...
T Consensus       152 ~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-------~~~~~laD~PGliega~~~~  224 (424)
T PRK12297        152 RLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-------GRSFVMADIPGLIEGASEGV  224 (424)
T ss_pred             EEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-------CceEEEEECCCCcccccccc
Confidence            99999999999999999999999999999999999999999999999886542       12799999999999998888


Q ss_pred             hHHHHHHHHhhhcCEEEEecccCCC---CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC
Q 021615          176 GLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG  252 (310)
Q Consensus       176 ~l~~~~~~~l~~~d~il~VvD~s~~---~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g  252 (310)
                      +++..|++|+++|++++||+|+++.   ++.+++..|.++|..|.+.+.++|+++|+||+|+....+..+.+.+.+. ..
T Consensus       225 gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~-~~  303 (424)
T PRK12297        225 GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG-PK  303 (424)
T ss_pred             hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC-Cc
Confidence            9999999999999999999999864   7888899999999999877778999999999998655444455554443 34


Q ss_pred             CCccccCccCCHHHHHHHHhhccCC
Q 021615          253 CDKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      +..+||+++.|+++++..+......
T Consensus       304 i~~iSA~tgeGI~eL~~~L~~~l~~  328 (424)
T PRK12297        304 VFPISALTGQGLDELLYAVAELLEE  328 (424)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            5678999999999999998765533

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=100.00  E-value=7e-46  Score=355.69  Aligned_cols=239  Identities=44%  Similarity=0.722  Sum_probs=207.7

Q ss_pred             cceee-cceEEEcCCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeehh
Q 021615           18 MHIHV-TGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLE   96 (310)
Q Consensus        18 ~~~~~-~g~~~~~~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~   96 (310)
                      +.|.| +||+|+|++|++++||..+++++++|+||.||+||.+|+++.+             +.|+.++.|++||++.+.
T Consensus        87 ~~i~VP~Gt~v~~~~~~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~~~-------------~~p~~~~~G~~Ge~~~~~  153 (500)
T PRK12296         87 LVLPVPDGTVVLDEDGEVLADLVGAGTRFVAAAGGRGGLGNAALASKAR-------------KAPGFALLGEPGEERDLV  153 (500)
T ss_pred             eEEecCCCcEEEcCCCcEEeeeccCCCEEEEEccCCCcCCCcccCCccC-------------CCCccccCCCCCceEEEE
Confidence            34555 8999999999999999999999999999999999999876433             377899999999999999


Q ss_pred             hhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615           97 LILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  176 (310)
Q Consensus        97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~  176 (310)
                      ++||.+++|+|||.||||||||+|+|++.++.+++|||||+.|+.+.+.....        +|++|||||+++.++...+
T Consensus       154 leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~--------~f~laDtPGliegas~g~g  225 (500)
T PRK12296        154 LELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT--------RFTVADVPGLIPGASEGKG  225 (500)
T ss_pred             EEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe--------EEEEEECCCCccccchhhH
Confidence            99999999999999999999999999999999999999999999999876532        7999999999999888889


Q ss_pred             HHHHHHHHhhhcCEEEEecccCC----CCcHHHHHHHHHHHHhcCC---------CCCCCCEEEEEeCCCCCCcHhHHHH
Q 021615          177 LGRNFLRHLRRTRLLVHVIDAAA----ENPVNDYRTVKEELRMYNP---------DYLERPFIVVLNKIDLPEARDRLQS  243 (310)
Q Consensus       177 l~~~~~~~l~~~d~il~VvD~s~----~~~~~~~~~~~~~l~~~~~---------~~~~~p~ivv~NK~Dl~~~~~~~~~  243 (310)
                      ++..|++|+++||+++||+|+++    .++.+++..+.++|..|..         .+.++|+++|+||+|+.+..+..+.
T Consensus       226 Lg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~  305 (500)
T PRK12296        226 LGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEF  305 (500)
T ss_pred             HHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHH
Confidence            99999999999999999999985    3577788888889988864         3457999999999999866554455


Q ss_pred             HHHHHHhcC--CCccccCccCCHHHHHHHHhhccCC
Q 021615          244 LTEEILKIG--CDKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       244 l~~~l~~~g--~~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      +...+...+  +..+|++++.|+.+++..|......
T Consensus       306 l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        306 VRPELEARGWPVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            555565544  4569999999999999988765543

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=100.00  E-value=3.2e-45  Score=338.73  Aligned_cols=235  Identities=45%  Similarity=0.765  Sum_probs=203.9

Q ss_pred             ceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeehh
Q 021615           19 HIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLE   96 (310)
Q Consensus        19 ~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~   96 (310)
                      .+.| +||+|+| +++++++||.+++|++++||||.||+||++|.++.             ++.|+.++.|.+||++.+.
T Consensus        85 ~~~vp~gt~v~~~~~~~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~~-------------~~~p~~~~~g~~g~~~~~~  151 (329)
T TIGR02729        85 VIKVPVGTVVYDADTGELLADLTEPGQRFVVAKGGRGGLGNAHFKSST-------------NRAPRFATPGEPGEERWLR  151 (329)
T ss_pred             EEEeCCCCEEEECCCCcEEeEeccCCcEEEecCCCCCCCCcccccCcc-------------CCCCcccCCCCCCcEEEEE
Confidence            4555 8999999 57899999999999999999999999999887542             2367889999999999999


Q ss_pred             hhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615           97 LILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  176 (310)
Q Consensus        97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~  176 (310)
                      ++||.+++|+|||.||||||||+|+|++.++.+++|||||+.|+.+.+....       ..++++|||||+++.++...+
T Consensus       152 lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-------~~~~~i~D~PGli~~a~~~~g  224 (329)
T TIGR02729       152 LELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-------GRSFVIADIPGLIEGASEGAG  224 (329)
T ss_pred             EEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-------ceEEEEEeCCCcccCCccccc
Confidence            9999999999999999999999999999999999999999999999987543       127999999999999888889


Q ss_pred             HHHHHHHHhhhcCEEEEecccCCC---CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-hc-
Q 021615          177 LGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-KI-  251 (310)
Q Consensus       177 l~~~~~~~l~~~d~il~VvD~s~~---~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-~~-  251 (310)
                      ++..|++|+++|+++++|+|+++.   ++.+++..|.++|..|...+.++|+++|+||+|+....+ .+.+.+.+. .. 
T Consensus       225 Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~  303 (329)
T TIGR02729       225 LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALG  303 (329)
T ss_pred             HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcC
Confidence            999999999999999999999976   788899999999998876667899999999999986543 344444443 22 


Q ss_pred             -CCCccccCccCCHHHHHHHHhhc
Q 021615          252 -GCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       252 -g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                       .+..+||+++.|+++++..+...
T Consensus       304 ~~vi~iSAktg~GI~eL~~~I~~~  327 (329)
T TIGR02729       304 KPVFPISALTGEGLDELLYALAEL  327 (329)
T ss_pred             CcEEEEEccCCcCHHHHHHHHHHH
Confidence             35668999999999999988653

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=100.00  E-value=1.5e-44  Score=340.65  Aligned_cols=242  Identities=40%  Similarity=0.637  Sum_probs=205.1

Q ss_pred             cceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeeh
Q 021615           18 MHIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSL   95 (310)
Q Consensus        18 ~~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~   95 (310)
                      ..|.| +||+|+| +++++++||.+++|++++||||.||+||++|.++.             ++.|+.++.|.+||++.+
T Consensus        86 ~~i~vP~gt~v~~~~~~~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~~~-------------~~~p~~~~~g~~g~~~~~  152 (390)
T PRK12298         86 ITIKVPVGTRVIDADTGEVIGDLTEHGQRLLVAKGGWHGLGNTRFKSSV-------------NRAPRQKTPGTPGEEREL  152 (390)
T ss_pred             eEEEcCCCCEEEeCCCCcEEEEeccCCcEEEEecCCCCccchhhhccCc-------------cCCCcccCCCCCCceEEE
Confidence            34555 8999998 68999999999999999999999999999876532             236788999999999999


Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  175 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~  175 (310)
                      .++||.+++|+|||.||||||||+|+|++.++.++++||||+.|+.+.+.....       ..++++||||+++.++.+.
T Consensus       153 ~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-------~~i~~vDtPGi~~~a~~~~  225 (390)
T PRK12298        153 KLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-------RSFVVADIPGLIEGASEGA  225 (390)
T ss_pred             EEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-------cEEEEEeCCCccccccchh
Confidence            999999999999999999999999999999998899999999999999876421       2599999999999888888


Q ss_pred             hHHHHHHHHhhhcCEEEEecccC---CCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-
Q 021615          176 GLGRNFLRHLRRTRLLVHVIDAA---AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-  251 (310)
Q Consensus       176 ~l~~~~~~~l~~~d~il~VvD~s---~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-  251 (310)
                      +++..|++|+++||++++|+|++   ...+.+++..|.+++..|...+.++|+++|+||+|+....+..+.+.+..... 
T Consensus       226 ~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~  305 (390)
T PRK12298        226 GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALG  305 (390)
T ss_pred             hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhC
Confidence            89999999999999999999998   45677888899999998876667899999999999976544333333222332 


Q ss_pred             ---CCCccccCccCCHHHHHHHHhhccCCcc
Q 021615          252 ---GCDKVTSETELSSEDAVKSLSTEGGEAD  279 (310)
Q Consensus       252 ---g~~~~sa~~~~gi~~l~~~l~~~~~~~~  279 (310)
                         .+..+||+++.|+.+++..+...+.+.+
T Consensus       306 ~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~  336 (390)
T PRK12298        306 WEGPVYLISAASGLGVKELCWDLMTFIEENP  336 (390)
T ss_pred             CCCCEEEEECCCCcCHHHHHHHHHHHhhhCc
Confidence               3456899999999999999877665433

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=3.9e-25  Score=185.30  Aligned_cols=164  Identities=54%  Similarity=0.879  Sum_probs=130.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      ++|+++|.+|||||||+|+|++.+..++.++++|..+..+.+.....       ..+.+|||||+.+.......+...|+
T Consensus         1 ~~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-------~~~~l~DtpG~~~~~~~~~~~~~~~~   73 (170)
T cd01898           1 ADVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-------RSFVVADIPGLIEGASEGKGLGHRFL   73 (170)
T ss_pred             CCeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-------CeEEEEecCcccCcccccCCchHHHH
Confidence            46999999999999999999998877788899999888887764321       26899999999765444445677888


Q ss_pred             HHhhhcCEEEEecccCCC-CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh---cCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~---~g~~~~sa  258 (310)
                      +++..||++++|+|+++. .+.+.+..|.+++..+.....++|+++|+||+|+.+.....+.+...+..   ..+..+|+
T Consensus        74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  153 (170)
T cd01898          74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISA  153 (170)
T ss_pred             HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEec
Confidence            888899999999999998 78888888888888765444579999999999997654433333334443   23556999


Q ss_pred             CccCCHHHHHHHHhh
Q 021615          259 ETELSSEDAVKSLST  273 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~  273 (310)
                      +.+.|+.++++.++.
T Consensus       154 ~~~~gi~~l~~~i~~  168 (170)
T cd01898         154 LTGEGLDELLRKLAE  168 (170)
T ss_pred             CCCCCHHHHHHHHHh
Confidence            999999999998764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.92  E-value=1.2e-25  Score=206.93  Aligned_cols=229  Identities=28%  Similarity=0.307  Sum_probs=163.4

Q ss_pred             CCCcEEEecCCCCceEEEe--------cCCC--C--CCCCCCcccchhccccccccccccCchhhhhhcCCCCceeehhh
Q 021615           30 KRGKLFSDLAHPGDEVLVA--------RGGR--G--GISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLEL   97 (310)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~--------~gg~--G--G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~   97 (310)
                      .+|+++++|++-...+..+        |.|+  |  |-|++.....+|.     ..+++.....++...-..++..+-.+
T Consensus       113 ~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG~rGpGE~~lE~drR~-----ir~rI~~i~~eLe~v~~~R~~~R~~R  187 (411)
T COG2262         113 REGKLQVELAQLRYELPRLVGSGSHLSRLGGGIGFRGPGETQLETDRRR-----IRRRIAKLKRELENVEKAREPRRKKR  187 (411)
T ss_pred             chhhhhhhHHhhhhhhhHhHhhhhhcccccCCCCCCCCCchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3468888888844333222        2232  2  5666655554332     11223333344444555555545455


Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      .-...+.|++||++|||||||+|+|++......+..|+|++|+...+...+       +.++.+.||.||++.  .+..+
T Consensus       188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-------g~~vlLtDTVGFI~~--LP~~L  258 (411)
T COG2262         188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-------GRKVLLTDTVGFIRD--LPHPL  258 (411)
T ss_pred             cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-------CceEEEecCccCccc--CChHH
Confidence            556789999999999999999999999988889999999999999987653       137999999999976  45667


Q ss_pred             HHHHHHH---hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCC
Q 021615          178 GRNFLRH---LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD  254 (310)
Q Consensus       178 ~~~~~~~---l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~  254 (310)
                      ..+|.+.   ...+|++++|+|++++...+.++...+.|.....  .+.|+|+|+||+|+.........+.... . ...
T Consensus       259 V~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~--~~~p~i~v~NKiD~~~~~~~~~~~~~~~-~-~~v  334 (411)
T COG2262         259 VEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGA--DEIPIILVLNKIDLLEDEEILAELERGS-P-NPV  334 (411)
T ss_pred             HHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCC--CCCCEEEEEecccccCchhhhhhhhhcC-C-CeE
Confidence            7777555   4678999999999999888888888888877643  4689999999999887644222222211 1 245


Q ss_pred             ccccCccCCHHHHHHHHhhccC
Q 021615          255 KVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      .+||+++.|++.+.+.+.....
T Consensus       335 ~iSA~~~~gl~~L~~~i~~~l~  356 (411)
T COG2262         335 FISAKTGEGLDLLRERIIELLS  356 (411)
T ss_pred             EEEeccCcCHHHHHHHHHHHhh
Confidence            6899999999999988766543

>PRK11058 GTPase HflX; Provisional

Probab=99.92  E-value=1.4e-25  Score=214.08  Aligned_cols=162  Identities=32%  Similarity=0.384  Sum_probs=118.3

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..++|+++|+||||||||+|+|++.+..+.+.+|+|+++....+.....       ..+.+|||||+++..  ...+...
T Consensus       196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-------~~~~l~DTaG~~r~l--p~~lve~  266 (426)
T PRK11058        196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-------GETVLADTVGFIRHL--PHDLVAA  266 (426)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-------CeEEEEecCcccccC--CHHHHHH
Confidence            4589999999999999999999998877889999999998877764321       168999999996531  1223333


Q ss_pred             H---HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC-CCcc
Q 021615          181 F---LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG-CDKV  256 (310)
Q Consensus       181 ~---~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g-~~~~  256 (310)
                      |   +.++..||++++|+|++++...++...+.+.+.....  .++|+++|+||+|+......  .+........ +..+
T Consensus       267 f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~--~~~pvIiV~NKiDL~~~~~~--~~~~~~~~~~~~v~I  342 (426)
T PRK11058        267 FKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA--HEIPTLLVMNKIDMLDDFEP--RIDRDEENKPIRVWL  342 (426)
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc--CCCCEEEEEEcccCCCchhH--HHHHHhcCCCceEEE
Confidence            3   4556789999999999998777776655555554422  36899999999999753221  1111111112 2458


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|++++++.+....
T Consensus       343 SAktG~GIdeL~e~I~~~l  361 (426)
T PRK11058        343 SAQTGAGIPLLFQALTERL  361 (426)
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999987765

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=5e-25  Score=205.76  Aligned_cols=158  Identities=32%  Similarity=0.370  Sum_probs=118.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH-
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR-  179 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~-  179 (310)
                      ..++|+++|+||||||||+|+|++.+..+.+++|+|+++....+.....       ..+.+|||||+++...  ..+.. 
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-------~~i~l~DT~G~~~~l~--~~lie~  258 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-------GEVLLTDTVGFIRDLP--HELVAA  258 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-------ceEEEEecCcccccCC--HHHHHH
Confidence            5689999999999999999999998866688999999998887765321       2789999999965311  22222 


Q ss_pred             --HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-cCCCcc
Q 021615          180 --NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-IGCDKV  256 (310)
Q Consensus       180 --~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-~g~~~~  256 (310)
                        ..+.++..||++++|+|++++...++...+...+.....  .++|+++|+||+|+.+..+ ...+   ... ..+..+
T Consensus       259 f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~--~~~piIlV~NK~Dl~~~~~-v~~~---~~~~~~~i~i  332 (351)
T TIGR03156       259 FRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA--EDIPQLLVYNKIDLLDEPR-IERL---EEGYPEAVFV  332 (351)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc--CCCCEEEEEEeecCCChHh-HHHH---HhCCCCEEEE
Confidence              234567899999999999998877776666666665432  3689999999999975432 2211   111 234569


Q ss_pred             ccCccCCHHHHHHHHhh
Q 021615          257 TSETELSSEDAVKSLST  273 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~  273 (310)
                      ||+++.|+++++..+..
T Consensus       333 SAktg~GI~eL~~~I~~  349 (351)
T TIGR03156       333 SAKTGEGLDLLLEAIAE  349 (351)
T ss_pred             EccCCCCHHHHHHHHHh
Confidence            99999999999998754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.90  E-value=2.4e-23  Score=194.38  Aligned_cols=155  Identities=27%  Similarity=0.331  Sum_probs=127.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc--cCCchHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA--HLGKGLGR  179 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~--~~~~~l~~  179 (310)
                      +.|++||.||||||||+|+|++.+.++ +++|++|.+...+.....+.        .|.++||+|+.+..  .....+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--------~f~lIDTgGl~~~~~~~l~~~i~~   75 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--------EFILIDTGGLDDGDEDELQELIRE   75 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--------eEEEEECCCCCcCCchHHHHHHHH
Confidence            679999999999999999999999887 99999999998888775543        79999999998754  34456667


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCc---c
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDK---V  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~---~  256 (310)
                      +.+..+..||+++||+|+..+.+.++.. +.+.|..     .++|+++|+||+|....    +.....+.++|+.+   +
T Consensus        76 Qa~~Ai~eADvilfvVD~~~Git~~D~~-ia~~Lr~-----~~kpviLvvNK~D~~~~----e~~~~efyslG~g~~~~I  145 (444)
T COG1160          76 QALIAIEEADVILFVVDGREGITPADEE-IAKILRR-----SKKPVILVVNKIDNLKA----EELAYEFYSLGFGEPVPI  145 (444)
T ss_pred             HHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCCEEEEEEcccCchh----hhhHHHHHhcCCCCceEe
Confidence            7788899999999999999877777643 4456664     47999999999998743    34455667787766   8


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||..|.|+.++++.+...+
T Consensus       146 SA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         146 SAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             ehhhccCHHHHHHHHHhhc
Confidence            9999999999999987765

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.90  E-value=1.8e-23  Score=187.27  Aligned_cols=196  Identities=23%  Similarity=0.440  Sum_probs=138.4

Q ss_pred             hhccccccccccccCchhhhhhcCCCCceeehhhhhh-ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccce
Q 021615           64 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILR-VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG  142 (310)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~l~-~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~  142 (310)
                      .|+.++++....++...+.+...+...+..+--..+. ..++|++.|+||||||||++.+++++|.+++|||||...++|
T Consensus       129 lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG  208 (346)
T COG1084         129 LRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG  208 (346)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe
Confidence            4445555555555666666666655555221111112 557899999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCccCCCceEEEeCCCCCccccCC-chHHHHH---HHHhhhcCEEEEecccCC--CCcHHHHHHHHHHHHhc
Q 021615          143 RLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-KGLGRNF---LRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMY  216 (310)
Q Consensus       143 ~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~-~~l~~~~---~~~l~~~d~il~VvD~s~--~~~~~~~~~~~~~l~~~  216 (310)
                      .+.....        +++++||||+.+..-.. ..+.++.   ++|+  .++++|++|.+.  ..+.+.-..++++++..
T Consensus       209 hfe~~~~--------R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~  278 (346)
T COG1084         209 HFERGYL--------RIQVIDTPGLLDRPLEERNEIERQAILALRHL--AGVILFLFDPSETCGYSLEEQISLLEEIKEL  278 (346)
T ss_pred             eeecCCc--------eEEEecCCcccCCChHHhcHHHHHHHHHHHHh--cCeEEEEEcCccccCCCHHHHHHHHHHHHHh
Confidence            9976543        89999999998764322 2333332   3343  579999999986  55666667778888764


Q ss_pred             CCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCC---ccccCccCCHHHHHHHHhhc
Q 021615          217 NPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD---KVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       217 ~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~---~~sa~~~~gi~~l~~~l~~~  274 (310)
                          ...|+++|+||+|..+. +..+++...+...+..   .+++..+.+.+..-..+...
T Consensus       279 ----f~~p~v~V~nK~D~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~  334 (346)
T COG1084         279 ----FKAPIVVVINKIDIADE-EKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT  334 (346)
T ss_pred             ----cCCCeEEEEecccccch-hHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence                35899999999999865 3355555555555444   57888888877766555443

>TIGR00436 era GTP-binding protein Era

Probab=99.90  E-value=1.4e-22  Score=183.44  Aligned_cols=162  Identities=23%  Similarity=0.223  Sum_probs=118.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF  181 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~~~  181 (310)
                      +|+++|.||||||||+|+|++.+..+ ++.|+||.....+......        .++.+|||||+.+... ....+.+.+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--------~qii~vDTPG~~~~~~~l~~~~~~~~   73 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--------SQIIFIDTPGFHEKKHSLNRLMMKEA   73 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--------cEEEEEECcCCCCCcchHHHHHHHHH
Confidence            58999999999999999999998654 8899999976665544322        2689999999976522 122344455


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc---CCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~---g~~~~sa  258 (310)
                      ..++..+|++++|+|+++....+  ..+.+.+..     .+.|+++|+||+|+....+..+.+.......   .+..+||
T Consensus        74 ~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~-----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA  146 (270)
T TIGR00436        74 RSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN-----LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISA  146 (270)
T ss_pred             HHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh-----cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEec
Confidence            67788999999999999865543  445555554     3689999999999975443333333222222   3466999


Q ss_pred             CccCCHHHHHHHHhhccCCccc
Q 021615          259 ETELSSEDAVKSLSTEGGEADL  280 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~~~~~~  280 (310)
                      +++.|++++++.+...+.+.+.
T Consensus       147 ~~g~gi~~L~~~l~~~l~~~~~  168 (270)
T TIGR00436       147 LTGDNTSFLAAFIEVHLPEGPF  168 (270)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCC
Confidence            9999999999999887755443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG1159 Era GTPase [General function prediction only]

Probab=99.90  E-value=1.3e-22  Score=180.23  Aligned_cols=166  Identities=26%  Similarity=0.322  Sum_probs=130.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF  181 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~~~  181 (310)
                      -|++||.||||||||+|+|.|.+..+ ++.|.||+....|.+..+..        +++++||||+.+..+ .++.+.+..
T Consensus         8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~--------QiIfvDTPGih~pk~~l~~~m~~~a   79 (298)
T COG1159           8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNA--------QIIFVDTPGIHKPKHALGELMNKAA   79 (298)
T ss_pred             EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCc--------eEEEEeCCCCCCcchHHHHHHHHHH
Confidence            38999999999999999999999887 99999999988888876543        899999999987632 355666777


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-c---CCCccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-I---GCDKVT  257 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-~---g~~~~s  257 (310)
                      .+.+..+|+++||+|+.......+ +.+.+.|+.     ...|+++++||+|.......+..+.+.+.. .   .+.++|
T Consensus        80 ~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~-----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiS  153 (298)
T COG1159          80 RSALKDVDLILFVVDADEGWGPGD-EFILEQLKK-----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPIS  153 (298)
T ss_pred             HHHhccCcEEEEEEeccccCCccH-HHHHHHHhh-----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEee
Confidence            788899999999999997444333 455566654     367999999999998876534455555542 2   344589


Q ss_pred             cCccCCHHHHHHHHhhccCCcccccc
Q 021615          258 SETELSSEDAVKSLSTEGGEADLLSS  283 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~~~~~~~~~  283 (310)
                      |..+.|+..+.+.+...+.+.+....
T Consensus       154 A~~g~n~~~L~~~i~~~Lpeg~~~yp  179 (298)
T COG1159         154 ALKGDNVDTLLEIIKEYLPEGPWYYP  179 (298)
T ss_pred             ccccCCHHHHHHHHHHhCCCCCCcCC
Confidence            99999999999999988877665433

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.89  E-value=5.4e-23  Score=172.93  Aligned_cols=160  Identities=44%  Similarity=0.782  Sum_probs=120.6

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhh
Q 021615          107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR  186 (310)
Q Consensus       107 lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~  186 (310)
                      ++|++|||||||+|+|++.+..+++++++|..++.+.+....       ...+.+|||||+.+.....+.+...++.++.
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~   73 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-------GARIQVADIPGLIEGASEGRGLGNQFLAHIR   73 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-------CCeEEEEeccccchhhhcCCCccHHHHHHHh
Confidence            589999999999999999887678899999999888765441       1278999999997655444556667778888


Q ss_pred             hcCEEEEecccCCC------CcHHHHHHHHHHHHhcCCC-----CCCCCEEEEEeCCCCCCcHhHHHHHHHHH---HhcC
Q 021615          187 RTRLLVHVIDAAAE------NPVNDYRTVKEELRMYNPD-----YLERPFIVVLNKIDLPEARDRLQSLTEEI---LKIG  252 (310)
Q Consensus       187 ~~d~il~VvD~s~~------~~~~~~~~~~~~l~~~~~~-----~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l---~~~g  252 (310)
                      .+|++++|+|+++.      .+..+...+..++..+...     ..++|+++|+||+|+..............   ....
T Consensus        74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (176)
T cd01881          74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAE  153 (176)
T ss_pred             ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCC
Confidence            99999999999987      5677777777777654322     24789999999999986544322211111   1234


Q ss_pred             CCccccCccCCHHHHHHHHhh
Q 021615          253 CDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      +..+|++++.|++++++.+..
T Consensus       154 ~~~~Sa~~~~gl~~l~~~l~~  174 (176)
T cd01881         154 VVPISAKTEEGLDELIRAIYE  174 (176)
T ss_pred             EEEEehhhhcCHHHHHHHHHh
Confidence            566899999999999998754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.89  E-value=2.1e-23  Score=172.31  Aligned_cols=150  Identities=29%  Similarity=0.419  Sum_probs=107.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC--CchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~--~~~l~~~  180 (310)
                      .+|+++|.||+|||||+|+|+|.+..++++|++|.+...+.+.....        .+.++|+||+......  .+.+.+.
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~--------~~~lvDlPG~ysl~~~s~ee~v~~~   72 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQ--------QVELVDLPGIYSLSSKSEEERVARD   72 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTE--------EEEEEE----SSSSSSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCc--------eEEEEECCCcccCCCCCcHHHHHHH
Confidence            36999999999999999999999988899999999999999876542        7999999998654322  2233333


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~~~s  257 (310)
                      ++. .+..|++++|+|+++.  ..+ ..+..++.+     .++|+++|+||+|......   ..+.+.+.+ ...+..+|
T Consensus        73 ~l~-~~~~D~ii~VvDa~~l--~r~-l~l~~ql~e-----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L-g~pvi~~s  142 (156)
T PF02421_consen   73 YLL-SEKPDLIIVVVDATNL--ERN-LYLTLQLLE-----LGIPVVVVLNKMDEAERKGIEIDAEKLSERL-GVPVIPVS  142 (156)
T ss_dssp             HHH-HTSSSEEEEEEEGGGH--HHH-HHHHHHHHH-----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH-TS-EEEEB
T ss_pred             HHh-hcCCCEEEEECCCCCH--HHH-HHHHHHHHH-----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh-CCCEEEEE
Confidence            332 3679999999999862  233 334455555     4799999999999865322   234555444 34455689


Q ss_pred             cCccCCHHHHHHH
Q 021615          258 SETELSSEDAVKS  270 (310)
Q Consensus       258 a~~~~gi~~l~~~  270 (310)
                      |.++.|++++.+.
T Consensus       143 a~~~~g~~~L~~~  155 (156)
T PF02421_consen  143 ARTGEGIDELKDA  155 (156)
T ss_dssp             TTTTBTHHHHHHH
T ss_pred             eCCCcCHHHHHhh
Confidence            9999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.89  E-value=1.1e-22  Score=181.80  Aligned_cols=162  Identities=37%  Similarity=0.583  Sum_probs=128.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      ++|++||+|++|||||+|.|++.+..+++|+|||+.|..|.+.+.+.        .++++|+||++++++.+.+.+++++
T Consensus        64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga--------~IQild~Pgii~gas~g~grG~~vl  135 (365)
T COG1163          64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGA--------QIQLLDLPGIIEGASSGRGRGRQVL  135 (365)
T ss_pred             eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCc--------eEEEEcCcccccCcccCCCCcceee
Confidence            67999999999999999999999999999999999999999998865        8999999999999999999999999


Q ss_pred             HHhhhcCEEEEecccCCCCcH------------------------------------------HHHHHHHHHHHhcCC--
Q 021615          183 RHLRRTRLLVHVIDAAAENPV------------------------------------------NDYRTVKEELRMYNP--  218 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~------------------------------------------~~~~~~~~~l~~~~~--  218 (310)
                      ..++.||++++|+|+......                                          -+...+...|.+|.-  
T Consensus       136 sv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~n  215 (365)
T COG1163         136 SVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHN  215 (365)
T ss_pred             eeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCccc
Confidence            999999999999999753210                                          011122222222210  


Q ss_pred             --------------------CCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHHHhhccC
Q 021615          219 --------------------DYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       219 --------------------~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                                          +..-+|.++|+||+|+... +..+.+.+..   ....+||+.+.|++++.+.+-..++
T Consensus       216 A~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         216 ADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-EELERLARKP---NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             ceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-HHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhhC
Confidence                                1134799999999999984 4455555433   6667999999999999988765554

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.89  E-value=3.7e-22  Score=183.64  Aligned_cols=173  Identities=36%  Similarity=0.566  Sum_probs=127.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC-----------------CCCccCCCceEEEeCCCC
Q 021615          105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT-----------------LGAEKYSSEATLADLPGL  167 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~-----------------~~~~~~~~~~~i~DtPG~  167 (310)
                      |++||.||||||||+|+|++.+..+++|||||.+|+.+.......                 ..+. ...++++|||||+
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~v~i~l~D~aGl   79 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGK-RYVPVELIDVAGL   79 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCc-CcceEEEEECCCC
Confidence            589999999999999999999988899999999999987764210                 0000 0126899999999


Q ss_pred             CccccCCchHHHHHHHHhhhcCEEEEecccCC-------------CCcHHHHHHHHHHHHhc-----------------C
Q 021615          168 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------------ENPVNDYRTVKEELRMY-----------------N  217 (310)
Q Consensus       168 ~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~-------------~~~~~~~~~~~~~l~~~-----------------~  217 (310)
                      +++++...+++.+|+.+++.||++++|+|++.             .++.++++.+..||..+                 .
T Consensus        80 v~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~  159 (318)
T cd01899          80 VPGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADA  159 (318)
T ss_pred             CCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99988889999999999999999999999974             24566666655555442                 0


Q ss_pred             ------------------------------C--------------------CCCCCCEEEEEeCCCCCCcHhHHHHHHHH
Q 021615          218 ------------------------------P--------------------DYLERPFIVVLNKIDLPEARDRLQSLTEE  247 (310)
Q Consensus       218 ------------------------------~--------------------~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~  247 (310)
                                                    .                    ....+|+++|+||+|+....+..+.+...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~~~  239 (318)
T cd01899         160 EKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLRLK  239 (318)
T ss_pred             CCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHHhh
Confidence                                          0                    02357999999999987554433333322


Q ss_pred             HHhcCCCccccCccCCHHHHHH-HHhhccCCc
Q 021615          248 ILKIGCDKVTSETELSSEDAVK-SLSTEGGEA  278 (310)
Q Consensus       248 l~~~g~~~~sa~~~~gi~~l~~-~l~~~~~~~  278 (310)
                      .....+..+||+.+.++.++.+ .+...+-+.
T Consensus       240 ~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~  271 (318)
T cd01899         240 YPDEIVVPTSAEAELALRRAAKQGLIKYDPGD  271 (318)
T ss_pred             CCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence            1122345589999999999997 577766443

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.88  E-value=9.9e-22  Score=164.41  Aligned_cols=161  Identities=27%  Similarity=0.359  Sum_probs=111.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc-hHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~-~l~~~~  181 (310)
                      ++|+++|.+|||||||+|+|++....+.+++++|..+..+.+....        .++++|||||+.+...... .+....
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~~~~~~~~~~~   72 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY--------LRWQVIDTPGLLDRPLEERNTIEMQA   72 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc--------eEEEEEECCCcCCccccCCchHHHHH
Confidence            5799999999999999999999887777788988887776665432        2799999999965432211 111111


Q ss_pred             HHHh-hhcCEEEEecccCCCCc--HHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hcCCCcc
Q 021615          182 LRHL-RRTRLLVHVIDAAAENP--VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKV  256 (310)
Q Consensus       182 ~~~l-~~~d~il~VvD~s~~~~--~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~g~~~~  256 (310)
                      ...+ ..+|++++|+|+++...  .+....|.+++....   .+.|+++|+||+|+....+. ....+...  ...+.++
T Consensus        73 ~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~  148 (168)
T cd01897          73 ITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF---KNKPVIVVLNKIDLLTFEDL-SEIEEEEELEGEEVLKI  148 (168)
T ss_pred             HHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc---CcCCeEEEEEccccCchhhH-HHHHHhhhhccCceEEE
Confidence            1111 23689999999987543  244455666665432   36899999999999765432 22222222  2345668


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|++++++.++..+
T Consensus       149 Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         149 STLTEEGVDEVKNKACELL  167 (168)
T ss_pred             EecccCCHHHHHHHHHHHh
Confidence            9999999999999987643

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.88  E-value=2.1e-22  Score=188.58  Aligned_cols=174  Identities=25%  Similarity=0.289  Sum_probs=133.9

Q ss_pred             chhhhhhcCCCCceeehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCC
Q 021615           79 DTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSS  157 (310)
Q Consensus        79 ~~~~~~~~g~~g~~~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~  157 (310)
                      ...++...+.+|+      .++.+.+|+++|.||||||||+|+|++.+.++ ++.|+||++.....+...+.        
T Consensus       200 ~l~~ll~~~~~g~------ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~--------  265 (454)
T COG0486         200 ELDELLATAKQGK------ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGI--------  265 (454)
T ss_pred             HHHHHHHhhhhhh------hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCE--------
Confidence            3444556666666      78899999999999999999999999999887 99999999988888877654        


Q ss_pred             ceEEEeCCCCCcccc--CCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAH--LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~--~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      ++.++||+|+.+...  +..|+.+++ ..++.||+++||+|++.+.+.++...+. .+.      .++|+++|.||+|+.
T Consensus       266 pv~l~DTAGiRet~d~VE~iGIeRs~-~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~------~~~~~i~v~NK~DL~  337 (454)
T COG0486         266 PVRLVDTAGIRETDDVVERIGIERAK-KAIEEADLVLFVLDASQPLDKEDLALIE-LLP------KKKPIIVVLNKADLV  337 (454)
T ss_pred             EEEEEecCCcccCccHHHHHHHHHHH-HHHHhCCEEEEEEeCCCCCchhhHHHHH-hcc------cCCCEEEEEechhcc
Confidence            899999999987654  345666664 6789999999999999875555544332 111      478999999999998


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHHHhhccC
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      ..... ..+ +......+..+|++++.|++.+.+.+.....
T Consensus       338 ~~~~~-~~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~  376 (454)
T COG0486         338 SKIEL-ESE-KLANGDAIISISAKTGEGLDALREAIKQLFG  376 (454)
T ss_pred             ccccc-chh-hccCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence            76432 222 2222334677999999999999988765443

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.87  E-value=1.7e-21  Score=184.40  Aligned_cols=175  Identities=38%  Similarity=0.576  Sum_probs=125.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC----------------CCccCCCceEEEeCCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----------------GAEKYSSEATLADLPG  166 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~----------------~~~~~~~~~~i~DtPG  166 (310)
                      ++|+|||.||||||||+|+|++.+..+++|||||++|+.|.+......                ........++++||||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            579999999999999999999999888999999999999986632110                0001113688999999


Q ss_pred             CCccccCCchHHHHHHHHhhhcCEEEEecccCC-------------CCcHHHHHHHHHHHHhc-----------------
Q 021615          167 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------------ENPVNDYRTVKEELRMY-----------------  216 (310)
Q Consensus       167 ~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~-------------~~~~~~~~~~~~~l~~~-----------------  216 (310)
                      +.++++.+.+++.+|+++++.||++++|+|++.             .++.++++.+..||..+                 
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~  161 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ  161 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            999988888999999999999999999999972             23455554444443221                 


Q ss_pred             -------------------------------C-C------------------CCCCCCEEEEEeCCCCCCcHhHHHHHHH
Q 021615          217 -------------------------------N-P------------------DYLERPFIVVLNKIDLPEARDRLQSLTE  246 (310)
Q Consensus       217 -------------------------------~-~------------------~~~~~p~ivv~NK~Dl~~~~~~~~~l~~  246 (310)
                                                     . +                  ....+|+++|+||+|.....+....+.+
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~i~~  241 (396)
T PRK09602        162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIERLKE  241 (396)
T ss_pred             cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHHHHh
Confidence                                           0 0                  0135899999999998643332333333


Q ss_pred             HHHhcCCCccccCccCCHHH-HHHHHhhccCCc
Q 021615          247 EILKIGCDKVTSETELSSED-AVKSLSTEGGEA  278 (310)
Q Consensus       247 ~l~~~g~~~~sa~~~~gi~~-l~~~l~~~~~~~  278 (310)
                      . ....+..+||+.+.++.+ +.+.+...+-+.
T Consensus       242 ~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~  273 (396)
T PRK09602        242 E-KYYIVVPTSAEAELALRRAAKAGLIDYIPGD  273 (396)
T ss_pred             c-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCC
Confidence            2 222345689999999988 566666555443

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=8e-22  Score=164.56  Aligned_cols=164  Identities=19%  Similarity=0.168  Sum_probs=121.6

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  175 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~  175 (310)
                      +...++||.|+|.+|||||.|+.++.+....-.  ..+|+  +.....+..+.    ..  .+++||||+|+.++.    
T Consensus         5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~--~~sTIGVDf~~rt~e~~g----k~--iKlQIWDTAGQERFr----   72 (205)
T KOG0084|consen    5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTES--YISTIGVDFKIRTVELDG----KT--IKLQIWDTAGQERFR----   72 (205)
T ss_pred             ccceEEEEEEECCCCcChhhhhhhhccCCcchh--hcceeeeEEEEEEeeecc----eE--EEEEeeeccccHHHh----
Confidence            556789999999999999999999998752111  12233  22223333322    11  289999999997663    


Q ss_pred             hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhc
Q 021615          176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKI  251 (310)
Q Consensus       176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~  251 (310)
                         ..+.++.+.|+++|+|+|+++..++..+..|..|+..|..  .++|.++|+||+|+.+...    ..+++...+...
T Consensus        73 ---tit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~--~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~  147 (205)
T KOG0084|consen   73 ---TITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS--ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIP  147 (205)
T ss_pred             ---hhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc--CCCCeEEEeeccccHhheecCHHHHHHHHHhcCCc
Confidence               3556777899999999999999999999999999999875  4589999999999987543    233333333322


Q ss_pred             CCCccccCccCCHHHHHHHHhhccCCc
Q 021615          252 GCDKVTSETELSSEDAVKSLSTEGGEA  278 (310)
Q Consensus       252 g~~~~sa~~~~gi~~l~~~l~~~~~~~  278 (310)
                      .+.++||+.+.++++.|..++..+...
T Consensus       148 ~f~ETSAK~~~NVe~~F~~la~~lk~~  174 (205)
T KOG0084|consen  148 IFLETSAKDSTNVEDAFLTLAKELKQR  174 (205)
T ss_pred             ceeecccCCccCHHHHHHHHHHHHHHh
Confidence            366899999999999999988766443

>PRK15494 era GTPase Era; Provisional

Probab=99.87  E-value=5.6e-21  Score=178.10  Aligned_cols=166  Identities=23%  Similarity=0.253  Sum_probs=119.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc-cCCchHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA-HLGKGLGR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~-~~~~~l~~  179 (310)
                      ..+|+++|.||||||||+|+|++.+..+ ++.+.||.....+.+....        .++.+|||||+.+.. .....+.+
T Consensus        52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--------~qi~~~DTpG~~~~~~~l~~~~~r  123 (339)
T PRK15494         52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--------TQVILYDTPGIFEPKGSLEKAMVR  123 (339)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--------eEEEEEECCCcCCCcccHHHHHHH
Confidence            3589999999999999999999987654 7788899876666665432        278999999996532 22233444


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc----CCCc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI----GCDK  255 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~----g~~~  255 (310)
                      ..+.++..||++++|+|+++.....+ ..+.+.+...     +.|.++|+||+|+...  ....+.+.+...    .+.+
T Consensus       124 ~~~~~l~~aDvil~VvD~~~s~~~~~-~~il~~l~~~-----~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~  195 (339)
T PRK15494        124 CAWSSLHSADLVLLIIDSLKSFDDIT-HNILDKLRSL-----NIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFP  195 (339)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCCHHH-HHHHHHHHhc-----CCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEE
Confidence            45566889999999999875322221 3455555542     5688899999998753  234455555433    3456


Q ss_pred             cccCccCCHHHHHHHHhhccCCcccccc
Q 021615          256 VTSETELSSEDAVKSLSTEGGEADLLSS  283 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~~~~~~~~~  283 (310)
                      +||+++.|+++++..+...+.+.+....
T Consensus       196 iSAktg~gv~eL~~~L~~~l~~~~~~~~  223 (339)
T PRK15494        196 ISALSGKNIDGLLEYITSKAKISPWLYA  223 (339)
T ss_pred             EeccCccCHHHHHHHHHHhCCCCCCCCC
Confidence            8999999999999999988876655433

>PTZ00258 GTP-binding protein; Provisional

Probab=99.87  E-value=2.7e-21  Score=181.39  Aligned_cols=115  Identities=33%  Similarity=0.568  Sum_probs=92.2

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC---------CCccCCCceEEEeCCCCCcc
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL---------GAEKYSSEATLADLPGLIEG  170 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~---------~~~~~~~~~~i~DtPG~~~~  170 (310)
                      ...++|+|||.||||||||+|+|++.++.+++|||||++|+.+.+......         +......++.++||||+.++
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            455789999999999999999999999888999999999999998654210         00001125899999999999


Q ss_pred             ccCCchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHHH
Q 021615          171 AHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELR  214 (310)
Q Consensus       171 ~~~~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l~  214 (310)
                      ++.+.+++..|+.++++||++++|+|+..          .++.++++.+..||.
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~  152 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELI  152 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHH
Confidence            88888999999999999999999999852          355666666555543

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.86  E-value=3.4e-21  Score=170.68  Aligned_cols=160  Identities=36%  Similarity=0.519  Sum_probs=120.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      ++|+++|+||+|||||+|+|++....+++++|+|..+..+.+.+...        .+++|||||+.+.+....++..+++
T Consensus         1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~--------~i~l~DtpG~~~~~~~~~~~~~~~l   72 (233)
T cd01896           1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA--------KIQLLDLPGIIEGAADGKGRGRQVI   72 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe--------EEEEEECCCcccccccchhHHHHHH
Confidence            47999999999999999999999888899999999998888765432        7899999999887655556777788


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHH--------------------------------------------HhcC-
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEEL--------------------------------------------RMYN-  217 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l--------------------------------------------~~~~-  217 (310)
                      ..++.+|++++|+|+++...  +...+.++|                                            ++|. 
T Consensus        73 ~~~~~ad~il~V~D~t~~~~--~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i  150 (233)
T cd01896          73 AVARTADLILMVLDATKPEG--HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKI  150 (233)
T ss_pred             HhhccCCEEEEEecCCcchh--HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCe
Confidence            88999999999999976432  222222333                                            2221 


Q ss_pred             ---------------------CCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHHHhhccC
Q 021615          218 ---------------------PDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       218 ---------------------~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                                           .+....|+++|+||+|+.+..+ ...+   .....+..+|++++.|++++++.+...+.
T Consensus       151 ~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~-~~~~---~~~~~~~~~SA~~g~gi~~l~~~i~~~L~  226 (233)
T cd01896         151 HNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE-LDLL---ARQPNSVVISAEKGLNLDELKERIWDKLG  226 (233)
T ss_pred             eeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH-HHHH---hcCCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence                                 1112369999999999976533 2222   22345677999999999999999876553

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04142 RRP22 RRP22 subfamily

Probab=99.86  E-value=1.2e-20  Score=163.09  Aligned_cols=169  Identities=18%  Similarity=0.204  Sum_probs=111.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC-CchHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~-~~~l~~~~  181 (310)
                      .+|+++|.+|||||||++++++.+......|.++.......+..+    +..+  .+.+|||||+.++... ........
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~----~~~~--~l~i~Dt~G~~~~~~~~~~e~~~~~   74 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLS----GRVY--DLHILDVPNMQRYPGTAGQEWMDPR   74 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEEC----CEEE--EEEEEeCCCcccCCccchhHHHHHH
Confidence            379999999999999999999876433323333222221222211    1112  6889999998654211 11111112


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCcc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKV  256 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~  256 (310)
                      ..+++.||++++|+|++++.+++....|.+.+..+.. ...+.|+++|+||+|+.....    ....+......+.+.++
T Consensus        75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~  154 (198)
T cd04142          75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLEC  154 (198)
T ss_pred             HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEe
Confidence            3456889999999999999999888888887765431 124689999999999965321    12222222223556789


Q ss_pred             ccCccCCHHHHHHHHhhccCC
Q 021615          257 TSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      ||+++.|++++|+.++.....
T Consensus       155 Sak~g~~v~~lf~~i~~~~~~  175 (198)
T cd04142         155 SAKYNWHILLLFKELLISATT  175 (198)
T ss_pred             cCCCCCCHHHHHHHHHHHhhc
Confidence            999999999999998876543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01861 Rab6 Rab6 subfamily

Probab=99.86  E-value=1.6e-20  Score=155.87  Aligned_cols=157  Identities=11%  Similarity=0.084  Sum_probs=113.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|++|||||||+++|++.+......+.++.+.....+..+.    ..  ..+.+|||||....       .....
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~l~~~D~~G~~~~-------~~~~~   67 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLED----KT--VRLQLWDTAGQERF-------RSLIP   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECC----EE--EEEEEEECCCcHHH-------HHHHH
Confidence            3799999999999999999999887666666666655554444321    11  16899999997543       12234


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~  259 (310)
                      ..+..+|++++|+|++++.++++...|...+.....  .+.|+++|+||+|+..... ..+........  ..+.++|++
T Consensus        68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  145 (161)
T cd01861          68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAK  145 (161)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCC
Confidence            456789999999999998888888888887765322  2689999999999954322 12222222233  345669999


Q ss_pred             ccCCHHHHHHHHhhc
Q 021615          260 TELSSEDAVKSLSTE  274 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~  274 (310)
                      ++.|+++++..++..
T Consensus       146 ~~~~v~~l~~~i~~~  160 (161)
T cd01861         146 AGHNVKELFRKIASA  160 (161)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            999999999998653

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01878 HflX HflX subfamily

Probab=99.85  E-value=1.7e-20  Score=162.53  Aligned_cols=160  Identities=31%  Similarity=0.391  Sum_probs=116.9

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      .+..++|+++|++|||||||+|+|++....+.+.+++|..+....+.....       ..+.+|||||+.+...  ..+.
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-------~~~~i~Dt~G~~~~~~--~~~~  108 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-------REVLLTDTVGFIRDLP--HQLV  108 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-------ceEEEeCCCccccCCC--HHHH
Confidence            345689999999999999999999998766677788888877766654321       1689999999965422  1122


Q ss_pred             HHH---HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCC
Q 021615          179 RNF---LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGC  253 (310)
Q Consensus       179 ~~~---~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~  253 (310)
                      ..+   +.++..+|++++|+|++++....+...+.+.+..+..  .++|+++|+||+|+.......    ..+..  ..+
T Consensus       109 ~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~--~~~~viiV~NK~Dl~~~~~~~----~~~~~~~~~~  182 (204)
T cd01878         109 EAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA--EDIPMILVLNKIDLLDDEELE----ERLEAGRPDA  182 (204)
T ss_pred             HHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc--CCCCEEEEEEccccCChHHHH----HHhhcCCCce
Confidence            222   3346689999999999988777776666666665432  368999999999997654322    22222  245


Q ss_pred             CccccCccCCHHHHHHHHhh
Q 021615          254 DKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~  273 (310)
                      ..+|++++.|+.+++..|..
T Consensus       183 ~~~Sa~~~~gi~~l~~~L~~  202 (204)
T cd01878         183 VFISAKTGEGLDELLEAIEE  202 (204)
T ss_pred             EEEEcCCCCCHHHHHHHHHh
Confidence            56899999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=6.4e-21  Score=174.60  Aligned_cols=97  Identities=38%  Similarity=0.698  Sum_probs=83.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC---------C-CCccCCCceEEEeCCCCCcccc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT---------L-GAEKYSSEATLADLPGLIEGAH  172 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~---------~-~~~~~~~~~~i~DtPG~~~~~~  172 (310)
                      .++||||.||||||||+|+++.....+++|||||++|+.|.++....         . +.......+.++|++|+..+++
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs   82 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS   82 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence            57999999999999999999999988899999999999999874320         0 0111123689999999999999


Q ss_pred             CCchHHHHHHHHhhhcCEEEEecccCC
Q 021615          173 LGKGLGRNFLRHLRRTRLLVHVIDAAA  199 (310)
Q Consensus       173 ~~~~l~~~~~~~l~~~d~il~VvD~s~  199 (310)
                      .++||+.+|+.+++.+|+|++|||++.
T Consensus        83 ~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          83 KGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             cCCCcchHHHHhhhhcCeEEEEEEecC
Confidence            999999999999999999999999984

>cd01864 Rab19 Rab19 subfamily

Probab=99.85  E-value=1.3e-20  Score=157.42  Aligned_cols=158  Identities=16%  Similarity=0.133  Sum_probs=106.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .+||+++|.+|||||||++++.+........+..+.+.....+....    .  ...+.+|||||+.+.       ....
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~l~i~D~~G~~~~-------~~~~   69 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEG----K--RVKLQIWDTAGQERF-------RTIT   69 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECC----E--EEEEEEEECCChHHH-------HHHH
Confidence            47899999999999999999987653221111111122222222211    1  126899999997543       1223


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVT  257 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~s  257 (310)
                      ...++.+|++++|+|++++.+++....|..++..+..  .+.|+++|+||+|+....+    ....+.+.+....+.++|
T Consensus        70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S  147 (165)
T cd01864          70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETS  147 (165)
T ss_pred             HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEE
Confidence            3456789999999999998888888888888876432  4689999999999975422    222333322223456799


Q ss_pred             cCccCCHHHHHHHHhhc
Q 021615          258 SETELSSEDAVKSLSTE  274 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~  274 (310)
                      ++++.|++++|..++..
T Consensus       148 a~~~~~v~~~~~~l~~~  164 (165)
T cd01864         148 AKESQNVEEAFLLMATE  164 (165)
T ss_pred             CCCCCCHHHHHHHHHHh
Confidence            99999999999998754

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04136 Rap_like Rap-like subfamily

Probab=99.85  E-value=1.9e-20  Score=155.61  Aligned_cols=156  Identities=17%  Similarity=0.181  Sum_probs=106.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      ++|+++|.+|||||||++++...... ..+..|+.......+..+.    .  ...+.+|||||+.++..    +.   .
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~----~--~~~l~i~Dt~G~~~~~~----~~---~   67 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEVDG----Q--QCMLEILDTAGTEQFTA----MR---D   67 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEECC----E--EEEEEEEECCCccccch----HH---H
Confidence            58999999999999999999976532 2233333222222222211    1  12678999999876522    22   2


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~sa  258 (310)
                      .+++.+|++++|+|.++..++++...|.+++..+.. ..+.|+++|+||+|+.....    ....+.+.+. ..+.++||
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa  145 (163)
T cd04136          68 LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETSA  145 (163)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEecC
Confidence            345689999999999998888888888888876532 23689999999999865322    1222222221 34567999


Q ss_pred             CccCCHHHHHHHHhhc
Q 021615          259 ETELSSEDAVKSLSTE  274 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~  274 (310)
                      +++.|+.++|..++..
T Consensus       146 ~~~~~v~~l~~~l~~~  161 (163)
T cd04136         146 KSKINVDEVFADLVRQ  161 (163)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            9999999999998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01868 Rab11_like Rab11-like

Probab=99.85  E-value=1.4e-20  Score=157.00  Aligned_cols=158  Identities=19%  Similarity=0.118  Sum_probs=110.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++.+......|.++.......+....    ..  ..+.+|||||+.+..       ...
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~l~D~~g~~~~~-------~~~   69 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDG----KT--IKAQIWDTAGQERYR-------AIT   69 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECC----EE--EEEEEEeCCChHHHH-------HHH
Confidence            36899999999999999999998875444444444333333333221    11  268999999986432       122


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHH--hcCCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEIL--KIGCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~--~~g~~~~sa  258 (310)
                      ..+++.++++++|+|+++..+++++..|..++.....  .+.|+++|+||+|+..... ..++......  ...+.++|+
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  147 (165)
T cd01868          70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSA  147 (165)
T ss_pred             HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEEC
Confidence            3456789999999999998888888888888876543  3589999999999875322 1222222222  345677999


Q ss_pred             CccCCHHHHHHHHhhc
Q 021615          259 ETELSSEDAVKSLSTE  274 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~  274 (310)
                      +++.|++++|+.+...
T Consensus       148 ~~~~~v~~l~~~l~~~  163 (165)
T cd01868         148 LDGTNVEEAFKQLLTE  163 (165)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            9999999999997653

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.84  E-value=2.1e-20  Score=161.78  Aligned_cols=163  Identities=17%  Similarity=0.112  Sum_probs=109.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      +||+++|.+|||||||+++|++........+....+.....+..+.   ...  ..+.+|||||.....       ..+.
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~---~~~--~~l~l~Dt~G~~~~~-------~~~~   68 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDP---NTV--VRLQLWDIAGQERFG-------GMTR   68 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC---CCE--EEEEEEECCCchhhh-------hhHH
Confidence            4799999999999999999998653221112111122222232220   111  268999999985542       1233


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCcH-hHHHHHHHHHHh---cCCCcc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK---IGCDKV  256 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~--~~~~~~p~ivv~NK~Dl~~~~-~~~~~l~~~l~~---~g~~~~  256 (310)
                      .+++.+|++++|+|++++.+++....|..++....  ....+.|+++|+||+|+.... ...+++.+....   ..+.++
T Consensus        69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~  148 (201)
T cd04107          69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFET  148 (201)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEE
Confidence            45679999999999999999998888888776532  112468999999999996321 112333333333   346679


Q ss_pred             ccCccCCHHHHHHHHhhccCC
Q 021615          257 TSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      ||+++.|++++|..+...+..
T Consensus       149 Sak~~~~v~e~f~~l~~~l~~  169 (201)
T cd04107         149 SAKEGINIEEAMRFLVKNILA  169 (201)
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999876643

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK00089 era GTPase Era; Reviewed

Probab=99.84  E-value=5.6e-20  Score=168.22  Aligned_cols=162  Identities=27%  Similarity=0.370  Sum_probs=115.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF  181 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~~~  181 (310)
                      .|+++|.||||||||+|+|++.+..+ ++.+.||.....+.+....        .++.++||||+.+... .+..+....
T Consensus         7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--------~qi~~iDTPG~~~~~~~l~~~~~~~~   78 (292)
T PRK00089          7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--------AQIIFVDTPGIHKPKRALNRAMNKAA   78 (292)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--------ceEEEEECCCCCCchhHHHHHHHHHH
Confidence            49999999999999999999998654 7788888876655554321        2799999999976432 122333444


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh----cCCCccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK----IGCDKVT  257 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~----~g~~~~s  257 (310)
                      ...+..+|++++|+|+++.... ....+.+.+..     .+.|+++|+||+|+....+......+.+..    ..+..+|
T Consensus        79 ~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~-----~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iS  152 (292)
T PRK00089         79 WSSLKDVDLVLFVVDADEKIGP-GDEFILEKLKK-----VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPIS  152 (292)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh-----cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEec
Confidence            5667899999999999873332 22344445543     368999999999998543334444444433    2345689


Q ss_pred             cCccCCHHHHHHHHhhccCCcc
Q 021615          258 SETELSSEDAVKSLSTEGGEAD  279 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~~~~~  279 (310)
                      ++++.|+.+++..+...+.+.+
T Consensus       153 A~~~~gv~~L~~~L~~~l~~~~  174 (292)
T PRK00089        153 ALKGDNVDELLDVIAKYLPEGP  174 (292)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCC
Confidence            9999999999999988775544

>cd01865 Rab3 Rab3 subfamily

Probab=99.84  E-value=2.5e-20  Score=155.98  Aligned_cols=158  Identities=12%  Similarity=0.073  Sum_probs=108.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||+++|++.+......+..+.+.....+...    ...  ..+.+|||||+.+..       ....
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~----~~~--~~~~l~Dt~g~~~~~-------~~~~   68 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRN----DKR--VKLQIWDTAGQERYR-------TITT   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC----CEE--EEEEEEECCChHHHH-------HHHH
Confidence            589999999999999999999876433222211111111111111    011  268999999986542       2334


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~sa~  259 (310)
                      .+++.+|++++|+|.++..+++.+..|.+++..+..  ...|+++|+||+|+.+.... .+...+....  +.+.++|++
T Consensus        69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  146 (165)
T cd01865          69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAK  146 (165)
T ss_pred             HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECC
Confidence            567899999999999998888888888888876543  36899999999999754321 1222222233  346679999


Q ss_pred             ccCCHHHHHHHHhhcc
Q 021615          260 TELSSEDAVKSLSTEG  275 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~  275 (310)
                      ++.|+.++|+.++...
T Consensus       147 ~~~gv~~l~~~l~~~~  162 (165)
T cd01865         147 ENINVKQVFERLVDII  162 (165)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999987643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04120 Rab12 Rab12 subfamily

Probab=99.84  E-value=2.8e-20  Score=161.22  Aligned_cols=156  Identities=13%  Similarity=0.142  Sum_probs=108.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCc-eeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFT-TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~t-T~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .|+++|.+|||||||++++....... .+..| +.......+..+.    ..  ..+.+|||+|+.++.       ..+.
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~-~~~~Ti~~~~~~~~i~~~~----~~--v~l~iwDtaGqe~~~-------~l~~   67 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCE-ACKSGVGVDFKIKTVELRG----KK--IRLQIWDTAGQERFN-------SITS   67 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEEEECC----EE--EEEEEEeCCCchhhH-------HHHH
Confidence            58999999999999999999765322 22211 1222222222221    11  278999999986552       1233


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH----HHHHHHHHHhcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----LQSLTEEILKIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~----~~~l~~~l~~~g~~~~sa  258 (310)
                      .+++.||++++|+|+++..+++....|...+..+..  .+.|+++|+||+|+....+.    .+.+.+.+..+.+.++||
T Consensus        68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~--~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSA  145 (202)
T cd04120          68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASA  145 (202)
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecC
Confidence            456799999999999999999999999888876542  46899999999999653322    222222222334667999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|..++...
T Consensus       146 ktg~gV~e~F~~l~~~~  162 (202)
T cd04120         146 KDNFNVDEIFLKLVDDI  162 (202)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999987655

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04109 Rab28 Rab28 subfamily

Probab=99.84  E-value=3.6e-20  Score=162.12  Aligned_cols=163  Identities=13%  Similarity=0.024  Sum_probs=111.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||+++|++........+..+.+.....+.....   .  ...+.+|||||+..+    ..+   +.
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~---~--~~~~~i~Dt~G~~~~----~~l---~~   68 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN---L--NVTLQVWDIGGQSIG----GKM---LD   68 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC---C--EEEEEEEECCCcHHH----HHH---HH
Confidence            37999999999999999999987543222333333333333332211   0  127899999997543    122   23


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~-~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~sa  258 (310)
                      .+++.+|++++|+|++++.+++....|..++..+... ....|+++|+||+|+..... ..+.........  .+.++||
T Consensus        69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSA  148 (215)
T cd04109          69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSA  148 (215)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEEC
Confidence            4467899999999999999999998898888876432 22457999999999974321 112222222233  3566899


Q ss_pred             CccCCHHHHHHHHhhccCC
Q 021615          259 ETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~~~  277 (310)
                      +++.|++++|+.++.....
T Consensus       149 ktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         149 KTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999876543

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.84  E-value=2.5e-20  Score=155.73  Aligned_cols=153  Identities=19%  Similarity=0.235  Sum_probs=105.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC----CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i----~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      +|+++|++|+|||||+++|++.....    .....+|.....+.+.++.        ..+.+|||||+.+.       ..
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~-------~~   65 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN--------ARLKFWDLGGQESL-------RS   65 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC--------EEEEEEECCCChhh-------HH
Confidence            48999999999999999998754321    2233455555555555432        27999999998654       22


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh---------
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---------  250 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~---------  250 (310)
                      .+..++..+|++++|+|+++.........+...+... ....+.|+++|+||+|+..... .+++.+.+..         
T Consensus        66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~~~  143 (167)
T cd04160          66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRN-EALEGVPLLILANKQDLPDALS-VEEIKEVFQDKAEEIGRRD  143 (167)
T ss_pred             HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEEccccccCCC-HHHHHHHhccccccccCCc
Confidence            3445678999999999998876666665555554432 1124789999999999876422 2333333321         


Q ss_pred             cCCCccccCccCCHHHHHHHHhh
Q 021615          251 IGCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       251 ~g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      ..+..+||+++.|+++++++|+.
T Consensus       144 ~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         144 CLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             eEEEEeeCCCCcCHHHHHHHHhc
Confidence            23556899999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.84  E-value=5.4e-20  Score=176.99  Aligned_cols=160  Identities=19%  Similarity=0.239  Sum_probs=116.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH--
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG--  178 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~--  178 (310)
                      ..+|+++|.+|+|||||+|+|++.+.. +.+.++||.++....+....        ..+.+|||||+.+.......+.  
T Consensus       172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~~e~~  243 (429)
T TIGR03594       172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--------KKYLLIDTAGIRRKGKVTEGVEKY  243 (429)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--------cEEEEEECCCccccccchhhHHHH
Confidence            468999999999999999999988754 47889999887666665432        2689999999977654332222  


Q ss_pred             --HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH----h--
Q 021615          179 --RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----K--  250 (310)
Q Consensus       179 --~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~----~--  250 (310)
                        ...+.+++.||++++|+|++++.+.++... ...+..     .++|+++|+||+|+....+..+.+.+.+.    .  
T Consensus       244 ~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~-~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  317 (429)
T TIGR03594       244 SVLRTLKAIERADVVLLVLDATEGITEQDLRI-AGLILE-----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLD  317 (429)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHH-----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCC
Confidence              122456789999999999998877776543 344443     36899999999999833333444444443    2  


Q ss_pred             -cCCCccccCccCCHHHHHHHHhhcc
Q 021615          251 -IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       251 -~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                       ..+.++||+++.|+.++|..+....
T Consensus       318 ~~~vi~~SA~~g~~v~~l~~~i~~~~  343 (429)
T TIGR03594       318 FAPIVFISALTGQGVDKLLDAIDEVY  343 (429)
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHH
Confidence             2455689999999999999876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01894 EngA1 EngA1 subfamily

Probab=99.84  E-value=3.4e-20  Score=152.64  Aligned_cols=151  Identities=23%  Similarity=0.317  Sum_probs=108.1

Q ss_pred             EEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHHHHHH
Q 021615          106 GLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNFLR  183 (310)
Q Consensus       106 ~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~~~~~  183 (310)
                      +++|.+|||||||+|+|++.... +++.+.+|............        ..+.+|||||+.+... ....+...+..
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~i~DtpG~~~~~~~~~~~~~~~~~~   72 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--------REFILIDTGGIEPDDEGISKEIREQAEL   72 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--------eEEEEEECCCCCCchhHHHHHHHHHHHH
Confidence            47999999999999999987643 36778888776665554432        2789999999977533 12223444556


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC---CCccccCc
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVTSET  260 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g---~~~~sa~~  260 (310)
                      .++.+|++++|+|+.+.....+.. +...+..     .+.|+++|+||+|+......    ...+...+   +..+|+++
T Consensus        73 ~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~-----~~~piiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~Sa~~  142 (157)
T cd01894          73 AIEEADVILFVVDGREGLTPADEE-IAKYLRK-----SKKPVILVVNKVDNIKEEDE----AAEFYSLGFGEPIPISAEH  142 (157)
T ss_pred             HHHhCCEEEEEEeccccCCccHHH-HHHHHHh-----cCCCEEEEEECcccCChHHH----HHHHHhcCCCCeEEEeccc
Confidence            678899999999998755444432 3344544     35899999999999876433    22333343   35689999


Q ss_pred             cCCHHHHHHHHhhc
Q 021615          261 ELSSEDAVKSLSTE  274 (310)
Q Consensus       261 ~~gi~~l~~~l~~~  274 (310)
                      +.|++++++.+.+.
T Consensus       143 ~~gv~~l~~~l~~~  156 (157)
T cd01894         143 GRGIGDLLDAILEL  156 (157)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999998653

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04158 ARD1 ARD1 subfamily

Probab=99.84  E-value=3.1e-20  Score=156.27  Aligned_cols=154  Identities=19%  Similarity=0.204  Sum_probs=106.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      +|+++|.+|||||||+++|++...  .. +.+|.......+.+..        ..+.+|||||+.+..       ..+..
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~~--------~~i~l~Dt~G~~~~~-------~~~~~   62 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYKN--------LKFTIWDVGGKHKLR-------PLWKH   62 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEECC--------EEEEEEECCCChhcc-------hHHHH
Confidence            589999999999999999998742  12 2344433333343322        278999999986542       23445


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--h------cCCCc
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--K------IGCDK  255 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~------~g~~~  255 (310)
                      +++.+|++++|+|++++.++.....++..+.... ...+.|+++|+||+|+..... .+++.+.+.  .      ..+.+
T Consensus        63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  140 (169)
T cd04158          63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEK-ELRDALLLIFANKQDVAGALS-VEEMTELLSLHKLCCGRSWYIQG  140 (169)
T ss_pred             HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCh-hhCCCCEEEEEeCcCcccCCC-HHHHHHHhCCccccCCCcEEEEe
Confidence            6678999999999998877777766666654321 223589999999999965321 233333322  1      12445


Q ss_pred             cccCccCCHHHHHHHHhhccCC
Q 021615          256 VTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      +||+++.|++++|.+|+....+
T Consensus       141 ~Sa~~g~gv~~~f~~l~~~~~~  162 (169)
T cd04158         141 CDARSGMGLYEGLDWLSRQLVA  162 (169)
T ss_pred             CcCCCCCCHHHHHHHHHHHHhh
Confidence            8999999999999999876544

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.84  E-value=2.6e-20  Score=155.67  Aligned_cols=159  Identities=17%  Similarity=0.124  Sum_probs=109.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .+||+++|.+|||||||++++.+........+..+.+.....+....    ..  ..+.+|||||+....       ...
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~i~D~~G~~~~~-------~~~   68 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG----KT--IKLQIWDTAGQERFR-------TIT   68 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC----EE--EEEEEEECCCcHhHH-------HHH
Confidence            36899999999999999999998764433223222222222222111    11  268999999976542       122


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~sa  258 (310)
                      ..+++.+|++++|+|+++..++..+..|..++..+..  .+.|+++|+||+|+...... .++.......  ..+.++|+
T Consensus        69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  146 (166)
T cd01869          69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSA  146 (166)
T ss_pred             HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence            3456789999999999998888888888888877642  36899999999998654221 1222222232  34566999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|+.++|..+++..
T Consensus       147 ~~~~~v~~~~~~i~~~~  163 (166)
T cd01869         147 KNATNVEQAFMTMAREI  163 (166)
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999987644

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.84  E-value=4.4e-20  Score=154.78  Aligned_cols=159  Identities=16%  Similarity=0.111  Sum_probs=110.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||++++++........+..+.+.....+....    ..  ..+.+|||||+....       ...
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~----~~--~~l~l~D~~g~~~~~-------~~~   69 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDG----KK--IKLQIWDTAGQERFR-------TIT   69 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECC----EE--EEEEEEeCCchHHHH-------HHH
Confidence            46899999999999999999998764332222222211112222111    11  268999999976542       223


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa  258 (310)
                      ..+++.+|++++|+|++++.+++.+..|..++..+..  .+.|+++|+||+|+.+... ..+........  ..+.++|+
T Consensus        70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  147 (167)
T cd01867          70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSA  147 (167)
T ss_pred             HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence            3556789999999999998888888888888877542  4689999999999975321 12223333333  34577999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|+.++|..++...
T Consensus       148 ~~~~~v~~~~~~i~~~~  164 (167)
T cd01867         148 KANINVEEAFFTLAKDI  164 (167)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999987654

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.84  E-value=6.8e-20  Score=151.64  Aligned_cols=157  Identities=18%  Similarity=0.142  Sum_probs=106.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||+++|++.+.. ..+..|+.......+..+.    ..  ..+.+|||||..+..    .   .+.
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~----~---l~~   67 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDG----ET--CLLDILDTAGQEEYS----A---MRD   67 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEEECC----EE--EEEEEEECCCCcchH----H---HHH
Confidence            47999999999999999999987532 2232222211111222111    11  157899999986542    2   233


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc--CCCccccCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVTSET  260 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~--g~~~~sa~~  260 (310)
                      .+++.+|++++|+|.++..+++....|...+..+.. ..+.|+++|+||+|+...........+.....  .+.++|+++
T Consensus        68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  146 (162)
T cd04138          68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKT  146 (162)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCC
Confidence            456689999999999988888888777777766532 23689999999999976432223333333333  455699999


Q ss_pred             cCCHHHHHHHHhhc
Q 021615          261 ELSSEDAVKSLSTE  274 (310)
Q Consensus       261 ~~gi~~l~~~l~~~  274 (310)
                      +.|++++|..++..
T Consensus       147 ~~gi~~l~~~l~~~  160 (162)
T cd04138         147 RQGVEEAFYTLVRE  160 (162)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999998653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.84  E-value=3.2e-20  Score=172.28  Aligned_cols=111  Identities=38%  Similarity=0.680  Sum_probs=89.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC---------CCCccCCCceEEEeCCCCCccccC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT---------LGAEKYSSEATLADLPGLIEGAHL  173 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~---------~~~~~~~~~~~i~DtPG~~~~~~~  173 (310)
                      .+|++||.||||||||+|+|++.++.+++|||||++|+.|.+.....         .+.......+.++||||+.++++.
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            57999999999999999999999988899999999999998875431         000011125899999999999888


Q ss_pred             CchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHH
Q 021615          174 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEEL  213 (310)
Q Consensus       174 ~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l  213 (310)
                      +.+++..|+.++++||++++|||++.          .++..+++.+..||
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL  132 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTEL  132 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence            88999999999999999999999853          24555555555554

>cd04122 Rab14 Rab14 subfamily

Probab=99.84  E-value=2.8e-20  Score=155.67  Aligned_cols=157  Identities=19%  Similarity=0.102  Sum_probs=107.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee-eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~-~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .||+++|.+|||||||++++.+.... ..++.|+. +.....+...    ...  ..+.+|||||..+.       ....
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~----~~~--~~l~i~Dt~G~~~~-------~~~~   68 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVN----GQK--IKLQIWDTAGQERF-------RAVT   68 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCcccceeEEEEEEEEC----CEE--EEEEEEECCCcHHH-------HHHH
Confidence            68999999999999999999977532 22332221 1111112111    111  16899999998554       2233


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa  258 (310)
                      ..+++.+|++++|+|++++.+++.+..|...+.....  .+.|+++|+||+|+....+ ..++..+....  ..+.++||
T Consensus        69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  146 (166)
T cd04122          69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSA  146 (166)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEEC
Confidence            4556799999999999999999988888887765432  3589999999999975432 12233333333  34566999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|+.++|..++...
T Consensus       147 ~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         147 KTGENVEDAFLETAKKI  163 (166)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999887543

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=5.6e-20  Score=178.75  Aligned_cols=187  Identities=21%  Similarity=0.239  Sum_probs=124.2

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch--H
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG--L  177 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~--l  177 (310)
                      ..++|+++|.||||||||+|+|++.+.. ++++++||.++....+....        ..+.+|||||+.+......+  .
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--------~~~~l~DTaG~~~~~~~~~~~e~  281 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--------KTWRFVDTAGLRRRVKQASGHEY  281 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--------EEEEEEECCCccccccccchHHH
Confidence            3579999999999999999999998754 48899999987766665432        26899999998654322111  1


Q ss_pred             HHH--HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---HHHHHHHHHhc-
Q 021615          178 GRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEILKI-  251 (310)
Q Consensus       178 ~~~--~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~l~~~l~~~-  251 (310)
                      -..  ...+++.+|++++|+|+++..+.++...+ ..+..     .++|+++|+||+|+......   ..++.+.+... 
T Consensus       282 ~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~-~~~~~-----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~  355 (472)
T PRK03003        282 YASLRTHAAIEAAEVAVVLIDASEPISEQDQRVL-SMVIE-----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVP  355 (472)
T ss_pred             HHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHH-HHHHH-----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCC
Confidence            111  12346789999999999998887776543 44433     37899999999999754221   12233333322 


Q ss_pred             --CCCccccCccCCHHHHHHHHhhccCCcccccccccccchhhhhhhhcCCC
Q 021615          252 --GCDKVTSETELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRP  301 (310)
Q Consensus       252 --g~~~~sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~le~~~~p  301 (310)
                        .+..+||+++.|++++|..++.........-............++..|.|
T Consensus       356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p  407 (472)
T PRK03003        356 WAPRVNISAKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAATPPP  407 (472)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC
Confidence              34458999999999999998775544333222222233333334444444

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.84  E-value=7.9e-20  Score=152.14  Aligned_cols=160  Identities=14%  Similarity=0.076  Sum_probs=107.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||+++|++.+......+..+.+.....+....    ..  ..+.+|||||..++.       ....
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~-------~~~~   67 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRN----KE--VRVNFFDLSGHPEYL-------EVRN   67 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC----eE--EEEEEEECCccHHHH-------HHHH
Confidence            3799999999999999999998763222112111111111222111    11  278999999985442       1223


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCC---CCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCcc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD---YLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKV  256 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~---~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~  256 (310)
                      .+++.+|++++|+|++++.+++....|..++..+...   ..+.|+++|+||+|+..... ..+........  ..+.++
T Consensus        68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (168)
T cd04119          68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFET  147 (168)
T ss_pred             HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEE
Confidence            3457899999999999988888888888888776432   24689999999999973211 12222222233  345679


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      |++++.|++++|+.+....
T Consensus       148 Sa~~~~gi~~l~~~l~~~l  166 (168)
T cd04119         148 SACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            9999999999999986543

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.84  E-value=1.5e-20  Score=181.34  Aligned_cols=157  Identities=25%  Similarity=0.272  Sum_probs=115.6

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  176 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~  176 (310)
                      .++..++|+++|+||||||||+|+|++.+.. ++++++||.+.....+.....        ++.+|||||+.+....-+.
T Consensus       211 ~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--------~i~l~DT~G~~~~~~~ie~  282 (449)
T PRK05291        211 ILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--------PLRLIDTAGIRETDDEVEK  282 (449)
T ss_pred             HhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--------EEEEEeCCCCCCCccHHHH
Confidence            3456789999999999999999999998764 488999998877766664432        7899999999754221111


Q ss_pred             HH-HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCc
Q 021615          177 LG-RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDK  255 (310)
Q Consensus       177 l~-~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~  255 (310)
                      .+ +..+.++..+|++++|+|++++.+.++...|..        ..++|+++|+||+|+.......     ......+..
T Consensus       283 ~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--------~~~~piiiV~NK~DL~~~~~~~-----~~~~~~~i~  349 (449)
T PRK05291        283 IGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--------LKDKPVIVVLNKADLTGEIDLE-----EENGKPVIR  349 (449)
T ss_pred             HHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--------cCCCCcEEEEEhhhccccchhh-----hccCCceEE
Confidence            11 123467889999999999998776665544432        1468999999999997643221     112234566


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +|++++.|++++++.+....
T Consensus       350 iSAktg~GI~~L~~~L~~~l  369 (449)
T PRK05291        350 ISAKTGEGIDELREAIKELA  369 (449)
T ss_pred             EEeeCCCCHHHHHHHHHHHH
Confidence            99999999999999987755

>cd01866 Rab2 Rab2 subfamily

Probab=99.84  E-value=7.3e-20  Score=153.67  Aligned_cols=159  Identities=16%  Similarity=0.066  Sum_probs=111.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||++++++........+..+.+.....+....    .  ...+.+|||||..+.       ....
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~-------~~~~   70 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG----K--QIKLQIWDTAGQESF-------RSIT   70 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC----E--EEEEEEEECCCcHHH-------HHHH
Confidence            46899999999999999999998765443333323332222232221    1  126899999997543       2233


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa  258 (310)
                      ..+++.+|++++|+|++++.+++++..|..++..+..  .+.|+++|+||+|+..... ..+........  ..+.++|+
T Consensus        71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  148 (168)
T cd01866          71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSA  148 (168)
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence            4566789999999999998889999889888876532  4689999999999974321 12222223333  45666999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +.+.|+.++|..+++..
T Consensus       149 ~~~~~i~~~~~~~~~~~  165 (168)
T cd01866         149 KTASNVEEAFINTAKEI  165 (168)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999887654

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04112 Rab26 Rab26 subfamily

Probab=99.84  E-value=4.4e-20  Score=158.52  Aligned_cols=160  Identities=16%  Similarity=0.120  Sum_probs=110.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccce-EeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~-~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .||+++|.+|||||||++++.+.+.....++.|+...... .+..+.    .  ...+.||||||.....       ...
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~-------~~~   67 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDG----V--KVKLQIWDTAGQERFR-------SVT   67 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECC----E--EEEEEEEeCCCcHHHH-------Hhh
Confidence            3799999999999999999998875444444333211111 122111    1  1268999999975431       122


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa  258 (310)
                      ..++..+|++++|+|+++..+++++..|...+..+..  .+.|+++|+||+|+..... ..++.......  ..+.++|+
T Consensus        68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa  145 (191)
T cd04112          68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSA  145 (191)
T ss_pred             HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeC
Confidence            3456789999999999998888888888888887643  3689999999999964221 11222222222  35667999


Q ss_pred             CccCCHHHHHHHHhhccCC
Q 021615          259 ETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~~~  277 (310)
                      +++.|+.++|..++..+..
T Consensus       146 ~~~~~v~~l~~~l~~~~~~  164 (191)
T cd04112         146 KTGLNVELAFTAVAKELKH  164 (191)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999876644

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04157 Arl6 Arl6 subfamily

Probab=99.84  E-value=6.5e-20  Score=152.20  Aligned_cols=153  Identities=18%  Similarity=0.162  Sum_probs=99.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      +|+++|.+|||||||+++|++.......+. +|.......+...        ...+.+|||||..+..       ..+..
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~--------~~~~~l~Dt~G~~~~~-------~~~~~   64 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKG--------NLSFTAFDMSGQGKYR-------GLWEH   64 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEEC--------CEEEEEEECCCCHhhH-------HHHHH
Confidence            489999999999999999998643222221 2222122222211        1278999999986542       23344


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcC-CCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-----h--cCCCc
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN-PDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGCDK  255 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~-~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-----~--~g~~~  255 (310)
                      +++.+|++++|+|+++..++.....+...+.... ....+.|+++|+||+|+.+... ..++...+.     .  ..+.+
T Consensus        65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~  143 (162)
T cd04157          65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT-AVKITQLLGLENIKDKPWHIFA  143 (162)
T ss_pred             HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC-HHHHHHHhCCccccCceEEEEE
Confidence            5678999999999998776665555555543321 1113689999999999976422 223332222     1  12456


Q ss_pred             cccCccCCHHHHHHHHhh
Q 021615          256 VTSETELSSEDAVKSLST  273 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~  273 (310)
                      +||+++.|++++|++|+.
T Consensus       144 ~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         144 SNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             eeCCCCCchHHHHHHHhc
Confidence            999999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04124 RabL2 RabL2 subfamily

Probab=99.83  E-value=5.4e-20  Score=153.47  Aligned_cols=153  Identities=20%  Similarity=0.134  Sum_probs=104.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceE--eeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR--LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~--v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .||+++|.+|||||||++++++........  .|..+....  +..+    ...  ..+.+|||||+..+..       .
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~--~~~~i~Dt~G~~~~~~-------~   65 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQL--STYALTLYKHNAKFE----GKT--ILVDFWDTAGQERFQT-------M   65 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcC--CceeeEEEEEEEEEC----CEE--EEEEEEeCCCchhhhh-------h
Confidence            379999999999999999999765322111  111111111  1111    111  2688999999865421       2


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCcccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTS  258 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa  258 (310)
                      +..+++.+|++++|+|++++.++++...|..++....   .+.|+++|+||+|+....  ..+.......  ..+..+|+
T Consensus        66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~Sa  140 (161)
T cd04124          66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLDPSV--TQKKFNFAEKHNLPLYYVSA  140 (161)
T ss_pred             hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCchhH--HHHHHHHHHHcCCeEEEEeC
Confidence            3345679999999999999888888888888887643   368999999999985432  1222222222  33556999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|..+....
T Consensus       141 ~~~~gv~~l~~~l~~~~  157 (161)
T cd04124         141 ADGTNVVKLFQDAIKLA  157 (161)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999986544

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04121 Rab40 Rab40 subfamily

Probab=99.83  E-value=6.3e-20  Score=157.49  Aligned_cols=157  Identities=17%  Similarity=0.157  Sum_probs=110.6

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCc-eeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFT-TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~t-T~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ...||+++|..|||||||+.++...... .++..+ +.+.....+..+.    ..  ..+.+|||||+.++.       .
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~----~~--~~l~iwDt~G~~~~~-------~   70 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILLDG----RR--VKLQLWDTSGQGRFC-------T   70 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEECC----EE--EEEEEEeCCCcHHHH-------H
Confidence            3478999999999999999999976432 222111 1111111222111    11  278999999986542       2


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc----HhHHHHHHHHHHhcCCCc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA----RDRLQSLTEEILKIGCDK  255 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~----~~~~~~l~~~l~~~g~~~  255 (310)
                      .+..+++.+|++++|+|++++.+++.+..|.+++..+.   .+.|+++|+||+|+...    .+..+.+.+.. .+.+.+
T Consensus        71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~-~~~~~e  146 (189)
T cd04121          71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLAFKRQVATEQAQAYAERN-GMTFFE  146 (189)
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccchhccCCCHHHHHHHHHHc-CCEEEE
Confidence            23345679999999999999999999999999998764   36899999999999652    22233333222 345777


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +||+++.|++++|..++...
T Consensus       147 ~SAk~g~~V~~~F~~l~~~i  166 (189)
T cd04121         147 VSPLCNFNITESFTELARIV  166 (189)
T ss_pred             ecCCCCCCHHHHHHHHHHHH
Confidence            99999999999999987644

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04113 Rab4 Rab4 subfamily

Probab=99.83  E-value=1.1e-19  Score=151.14  Aligned_cols=157  Identities=15%  Similarity=0.058  Sum_probs=107.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|++|||||||+++|.+........+..+.......+....    ..  ..+.+|||||+.+..       ....
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~l~l~D~~G~~~~~-------~~~~   67 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGG----KR--VKLQIWDTAGQERFR-------SVTR   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC----EE--EEEEEEECcchHHHH-------HhHH
Confidence            4799999999999999999998764332222222222222222211    11  268999999986542       1233


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~  259 (310)
                      .+++.+|++++|+|+++..+++.+..|+.++..+..  .+.|+++|+||+|+....+ ..++.......  ..+.++|++
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  145 (161)
T cd04113          68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSAL  145 (161)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECC
Confidence            456789999999999998888888888887765532  4689999999999975322 12222333333  445669999


Q ss_pred             ccCCHHHHHHHHhhc
Q 021615          260 TELSSEDAVKSLSTE  274 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~  274 (310)
                      ++.|+.++|..++..
T Consensus       146 ~~~~i~~~~~~~~~~  160 (161)
T cd04113         146 TGENVEEAFLKCARS  160 (161)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            999999999998754

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.83  E-value=5.1e-20  Score=152.04  Aligned_cols=151  Identities=26%  Similarity=0.354  Sum_probs=107.2

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC--chHHHHHHHH
Q 021615          107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRNFLRH  184 (310)
Q Consensus       107 lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~--~~l~~~~~~~  184 (310)
                      |+|.+|+|||||+|++++....+..++++|.......+..+.        ..+.+|||||+.+.....  ..+...++.+
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   72 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--------KEIEIVDLPGTYSLSPYSEDEKVARDFLLG   72 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--------eEEEEEECCCccccCCCChhHHHHHHHhcC
Confidence            589999999999999999876668889999988777776542        268999999997654321  2233444433


Q ss_pred             hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCccccCccC
Q 021615          185 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSETEL  262 (310)
Q Consensus       185 l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa~~~~  262 (310)
                       +.+|++++|+|+.+....   ..+..++..     .++|+++|+||+|+.+..............  ..+.++|+.++.
T Consensus        73 -~~~d~vi~v~d~~~~~~~---~~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~  143 (158)
T cd01879          73 -EKPDLIVNVVDATNLERN---LYLTLQLLE-----LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGE  143 (158)
T ss_pred             -CCCcEEEEEeeCCcchhH---HHHHHHHHH-----cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCC
Confidence             589999999999874332   233344444     368999999999997653222222222222  346679999999


Q ss_pred             CHHHHHHHHhhc
Q 021615          263 SSEDAVKSLSTE  274 (310)
Q Consensus       263 gi~~l~~~l~~~  274 (310)
                      |+.+++..+...
T Consensus       144 ~~~~l~~~l~~~  155 (158)
T cd01879         144 GIDELKDAIAEL  155 (158)
T ss_pred             CHHHHHHHHHHH
Confidence            999999998654

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04175 Rap1 Rap1 subgroup

Probab=99.83  E-value=8e-20  Score=152.45  Aligned_cols=156  Identities=17%  Similarity=0.211  Sum_probs=106.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      +||+++|.+|||||||++++..... ...++.|+.......+....    ..  ..+.+|||||+.+...    +.   .
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~----~~---~   67 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDG----QQ--CMLEILDTAGTEQFTA----MR---D   67 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECC----EE--EEEEEEECCCcccchh----HH---H
Confidence            5799999999999999999986532 23333333322222222211    11  2678999999866522    22   3


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~sa  258 (310)
                      .+++.+|++++|+|.++..+++....|...+..+.. ..+.|+++|+||+|+....    +....+.+.+ ...+.++||
T Consensus        68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa  145 (164)
T cd04175          68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQGQNLARQW-GCAFLETSA  145 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhccEEcHHHHHHHHHHh-CCEEEEeeC
Confidence            345689999999999988888888878777765432 2468999999999997532    1122333222 234567999


Q ss_pred             CccCCHHHHHHHHhhc
Q 021615          259 ETELSSEDAVKSLSTE  274 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~  274 (310)
                      +++.|+.++|..++..
T Consensus       146 ~~~~~v~~~~~~l~~~  161 (164)
T cd04175         146 KAKINVNEIFYDLVRQ  161 (164)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            9999999999998754

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.83  E-value=1.3e-19  Score=151.11  Aligned_cols=151  Identities=19%  Similarity=0.194  Sum_probs=100.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||++++...... . + .+|.......+....        ..+.+|||||+.+.       ...+.
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~-~-~pt~g~~~~~~~~~~--------~~~~l~D~~G~~~~-------~~~~~   62 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-T-T-IPTIGFNVETVEYKN--------ISFTVWDVGGQDKI-------RPLWR   62 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-c-c-CCCCCcceEEEEECC--------EEEEEEECCCCHhH-------HHHHH
Confidence            37999999999999999999755422 1 2 223322222233221        27899999998543       22344


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--h---c--CCCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--K---I--GCDK  255 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~---~--g~~~  255 (310)
                      .+++.||++++|+|+++..++.+...++..+.... .....|+++|+||+|+.+... .+++.+.+.  .   .  .+.+
T Consensus        63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~  140 (159)
T cd04150          63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNED-ELRDAVLLVFANKQDLPNAMS-AAEVTDKLGLHSLRNRNWYIQA  140 (159)
T ss_pred             HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcH-HhcCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCCEEEEE
Confidence            56789999999999998777777666555543221 223589999999999965322 223333331  1   1  1345


Q ss_pred             cccCccCCHHHHHHHHhh
Q 021615          256 VTSETELSSEDAVKSLST  273 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~  273 (310)
                      +||++|.|+.++|++|+.
T Consensus       141 ~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         141 TCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             eeCCCCCCHHHHHHHHhc
Confidence            899999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.83  E-value=1.6e-19  Score=150.07  Aligned_cols=157  Identities=19%  Similarity=0.155  Sum_probs=106.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|+|||||++++++... ...+..|+.......+....    .  ...+.+|||||+.+..    .+   ..
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~----~~---~~   68 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDG----Q--WAILDILDTAGQEEFS----AM---RE   68 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECC----E--EEEEEEEECCCCcchh----HH---HH
Confidence            5899999999999999999997653 23333333221111221111    1  1268899999986552    22   23


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~  259 (310)
                      .+++.+|++++|+|+++..+++....|..++..... ..+.|+++|+||+|+..... ..+...+....  ..+.++||+
T Consensus        69 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  147 (164)
T cd04145          69 QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAK  147 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCC
Confidence            456689999999999998888888888777765421 23689999999999975422 11222333333  345669999


Q ss_pred             ccCCHHHHHHHHhhc
Q 021615          260 TELSSEDAVKSLSTE  274 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~  274 (310)
                      ++.|+.++|+.++..
T Consensus       148 ~~~~i~~l~~~l~~~  162 (164)
T cd04145         148 DRLNVDKAFHDLVRV  162 (164)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            999999999998654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04114 Rab30 Rab30 subfamily

Probab=99.83  E-value=8.1e-20  Score=152.93  Aligned_cols=160  Identities=19%  Similarity=0.127  Sum_probs=109.2

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      +..++|+++|.+|||||||++++++........+..+.+.....+....    ..  ..+.+|||||+.+..       .
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~~~D~~g~~~~~-------~   71 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKG----EK--IKLQIWDTAGQERFR-------S   71 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECC----EE--EEEEEEECCCcHHHH-------H
Confidence            4568899999999999999999996653322222222222222232221    11  157899999985442       2


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh---cCCCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~---~g~~~~  256 (310)
                      .....+..+|++++|+|+++..+++.+..|..++..+..  .+.|+++|+||+|+....+....+.+.+..   ..+.++
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~  149 (169)
T cd04114          72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLET  149 (169)
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEe
Confidence            233456789999999999988888777778877776542  368999999999997543322233333332   346679


Q ss_pred             ccCccCCHHHHHHHHhhc
Q 021615          257 TSETELSSEDAVKSLSTE  274 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~  274 (310)
                      |++++.|+.++|..++..
T Consensus       150 Sa~~~~gv~~l~~~i~~~  167 (169)
T cd04114         150 SAKESDNVEKLFLDLACR  167 (169)
T ss_pred             eCCCCCCHHHHHHHHHHH
Confidence            999999999999998754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01863 Rab18 Rab18 subfamily

Probab=99.83  E-value=1.9e-19  Score=149.53  Aligned_cols=155  Identities=19%  Similarity=0.115  Sum_probs=106.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .||+++|++|||||||+++|++.....  .+....+....  .+....    ..  ..+.+|||||+.+...       .
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~--~~~~l~D~~g~~~~~~-------~   65 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVK--TLTVDG----KK--VKLAIWDTAGQERFRT-------L   65 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEE--EEEECC----EE--EEEEEEECCCchhhhh-------h
Confidence            379999999999999999999876433  22222222211  121111    11  2689999999865422       2


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hcCCCcccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVTS  258 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~g~~~~sa  258 (310)
                      ....++.+|++++|+|+++..+++.+..|...+..+.. ..+.|+++|+||+|+.......+...+...  .+.+.++|+
T Consensus        66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa  144 (161)
T cd01863          66 TSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSA  144 (161)
T ss_pred             hHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEec
Confidence            23445789999999999998888888888888877643 246899999999999743222222222223  345667999


Q ss_pred             CccCCHHHHHHHHhh
Q 021615          259 ETELSSEDAVKSLST  273 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~  273 (310)
                      +++.|+++++..+..
T Consensus       145 ~~~~gi~~~~~~~~~  159 (161)
T cd01863         145 KTRDGVQQAFEELVE  159 (161)
T ss_pred             CCCCCHHHHHHHHHH
Confidence            999999999998754

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.1e-19  Score=153.68  Aligned_cols=160  Identities=20%  Similarity=0.168  Sum_probs=121.0

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  176 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~  176 (310)
                      ...+++|+++|.+|||||+|+.++.........  -+|+  +-...++..+.    .  ..++++|||+|+.++      
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~--~sTiGIDFk~kti~l~g----~--~i~lQiWDtaGQerf------   74 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSF--ISTIGIDFKIKTIELDG----K--KIKLQIWDTAGQERF------   74 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCc--cceEEEEEEEEEEEeCC----e--EEEEEEEEcccchhH------
Confidence            356789999999999999999999977532211  1222  22233333332    1  237899999999776      


Q ss_pred             HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcC
Q 021615          177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIG  252 (310)
Q Consensus       177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g  252 (310)
                       ...+.++++.|+++++|||.++..+++.+..|++.++++.+  .+.|.++|+||+|+....    ++.+.+...+ ...
T Consensus        75 -~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~--~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~-G~~  150 (207)
T KOG0078|consen   75 -RTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS--DDVVKILVGNKCDLEEKRQVSKERGEALAREY-GIK  150 (207)
T ss_pred             -HHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC--CCCcEEEeeccccccccccccHHHHHHHHHHh-CCe
Confidence             33556677899999999999999999999999999999876  479999999999998743    3445555444 345


Q ss_pred             CCccccCccCCHHHHHHHHhhccC
Q 021615          253 CDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      +.++||+++.++.+.|..|++...
T Consensus       151 F~EtSAk~~~NI~eaF~~La~~i~  174 (207)
T KOG0078|consen  151 FFETSAKTNFNIEEAFLSLARDIL  174 (207)
T ss_pred             EEEccccCCCCHHHHHHHHHHHHH
Confidence            667999999999999999988664

>cd04140 ARHI_like ARHI subfamily

Probab=99.83  E-value=1.1e-19  Score=152.04  Aligned_cols=157  Identities=13%  Similarity=0.118  Sum_probs=104.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||++++++...... +..|+.......+....    .  ...+.+|||||+.++..    +.   .
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~t~~~~~~~~~~~~~----~--~~~l~i~Dt~G~~~~~~----~~---~   67 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCSK----N--ICTLQITDTTGSHQFPA----MQ---R   67 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCC-cCCcchheEEEEEEECC----E--EEEEEEEECCCCCcchH----HH---H
Confidence            5799999999999999999998763221 11111111111111110    1  12689999999976521    22   2


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHH--hcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~--~~g~~~~sa  258 (310)
                      .++..+|++++|+|+++..+++....|++.+..+.. ...+.|+++|+||+|+....+. .+.......  ...+.++||
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA  147 (165)
T cd04140          68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSA  147 (165)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeec
Confidence            345689999999999999888888888877766432 1246899999999999753221 111111122  345667999


Q ss_pred             CccCCHHHHHHHHhh
Q 021615          259 ETELSSEDAVKSLST  273 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~  273 (310)
                      +++.|+.++|+.+..
T Consensus       148 ~~g~~v~~~f~~l~~  162 (165)
T cd04140         148 KTNHNVQELFQELLN  162 (165)
T ss_pred             CCCCCHHHHHHHHHh
Confidence            999999999999753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04149 Arf6 Arf6 subfamily

Probab=99.83  E-value=9.7e-20  Score=153.29  Aligned_cols=152  Identities=18%  Similarity=0.185  Sum_probs=100.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|+..... . + .+|.......+....        ..+.+|||||+.+.       ...+
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~-~-~~t~g~~~~~~~~~~--------~~~~l~Dt~G~~~~-------~~~~   70 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSV-T-T-IPTVGFNVETVTYKN--------VKFNVWDVGGQDKI-------RPLW   70 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCc-c-c-cCCcccceEEEEECC--------EEEEEEECCCCHHH-------HHHH
Confidence            368999999999999999999865421 1 1 122222222232221        27999999998543       2233


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-----h--cCCC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGCD  254 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-----~--~g~~  254 (310)
                      ..+++.||++++|+|++++.+++....++.++... ....+.|+++|+||+|+.... ..+++.+.+.     .  ..+.
T Consensus        71 ~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~  148 (168)
T cd04149          71 RHYYTGTQGLIFVVDSADRDRIDEARQELHRIIND-REMRDALLLVFANKQDLPDAM-KPHEIQEKLGLTRIRDRNWYVQ  148 (168)
T ss_pred             HHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcC-HhhcCCcEEEEEECcCCccCC-CHHHHHHHcCCCccCCCcEEEE
Confidence            44567999999999999877776665554444321 112468999999999987532 1233333332     1  1245


Q ss_pred             ccccCccCCHHHHHHHHhh
Q 021615          255 KVTSETELSSEDAVKSLST  273 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~  273 (310)
                      ++||+++.|+.++|.+|+.
T Consensus       149 ~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         149 PSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             EeeCCCCCChHHHHHHHhc
Confidence            6899999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=9.7e-20  Score=177.08  Aligned_cols=159  Identities=22%  Similarity=0.246  Sum_probs=114.3

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGL  177 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l  177 (310)
                      ...++|+|||.||||||||+|+|++.... +.+.+++|.+...+.+....        ..+.+|||||+..... ....+
T Consensus        36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~~  107 (472)
T PRK03003         36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--------RRFTVVDTGGWEPDAKGLQASV  107 (472)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--------cEEEEEeCCCcCCcchhHHHHH
Confidence            34588999999999999999999998754 47888888876666554432        2689999999864221 11223


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC---C
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---D  254 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~---~  254 (310)
                      ...+..+++.||++++|+|+++..+..+ ..+.+.+..     .++|+++|+||+|+.......    ..+...++   .
T Consensus       108 ~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-----~~~piilV~NK~Dl~~~~~~~----~~~~~~g~~~~~  177 (472)
T PRK03003        108 AEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR-----SGKPVILAANKVDDERGEADA----AALWSLGLGEPH  177 (472)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECccCCccchhh----HHHHhcCCCCeE
Confidence            3344556789999999999998766544 445556654     379999999999987532211    12223333   3


Q ss_pred             ccccCccCCHHHHHHHHhhccC
Q 021615          255 KVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      .+||+++.|+.++++.+.....
T Consensus       178 ~iSA~~g~gi~eL~~~i~~~l~  199 (472)
T PRK03003        178 PVSALHGRGVGDLLDAVLAALP  199 (472)
T ss_pred             EEEcCCCCCcHHHHHHHHhhcc
Confidence            5999999999999999887653

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.83  E-value=1.3e-19  Score=150.94  Aligned_cols=158  Identities=17%  Similarity=0.136  Sum_probs=105.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||++++++..... .+..|+.......+..+.    ..  ..+.+|||||+.+..    .+   ..
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~g~~~~~----~~---~~   66 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVD-DYDPTIEDSYRKQIEIDG----EV--CLLDILDTAGQEEFS----AM---RD   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCchhhhEEEEEEECC----EE--EEEEEEECCCcccch----HH---HH
Confidence            379999999999999999999865322 222222211111111111    11  268899999987652    12   23


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~  259 (310)
                      .++..+|++++|+|+++..+++.+..|...+..... ..+.|+++|+||+|+..... ..+........  ..+.++||+
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  145 (164)
T smart00173       67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAK  145 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecC
Confidence            346689999999999998888888777776655332 13689999999999975321 11222222223  446679999


Q ss_pred             ccCCHHHHHHHHhhcc
Q 021615          260 TELSSEDAVKSLSTEG  275 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~  275 (310)
                      ++.|++++|+.+....
T Consensus       146 ~~~~i~~l~~~l~~~~  161 (164)
T smart00173      146 ERVNVDEAFYDLVREI  161 (164)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999987643

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04144 Ras2 Ras2 subfamily

Probab=99.82  E-value=6.8e-20  Score=157.18  Aligned_cols=159  Identities=14%  Similarity=0.097  Sum_probs=107.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      +|+++|.+|||||||+++|...... ..++.|+.......+..+.    ..  ..+.+|||||..+...       ....
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~-------~~~~   66 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQVVVDG----QP--CMLEVLDTAGQEEYTA-------LRDQ   66 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEEEECC----EE--EEEEEEECCCchhhHH-------HHHH
Confidence            5899999999999999999976532 2233333221111121111    11  1588999999865422       2234


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCccccC
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~sa~  259 (310)
                      +++.+|++++|+|.++..+++.+..|+..+...... ..+.|+++|+||+|+...... .....+....  ..+.++||+
T Consensus        67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk  146 (190)
T cd04144          67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAK  146 (190)
T ss_pred             HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCC
Confidence            567899999999999998888888888888765321 246899999999999643221 1112222222  346679999


Q ss_pred             ccCCHHHHHHHHhhccC
Q 021615          260 TELSSEDAVKSLSTEGG  276 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~~  276 (310)
                      ++.|+.++|..++....
T Consensus       147 ~~~~v~~l~~~l~~~l~  163 (190)
T cd04144         147 TNVNVERAFYTLVRALR  163 (190)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999987553

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.82  E-value=1e-19  Score=154.25  Aligned_cols=155  Identities=16%  Similarity=0.148  Sum_probs=105.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||++++..... ..++..|........+...    +..+  .+.+|||||+.++..       ...
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~~~----~~~~--~l~i~Dt~G~~~~~~-------~~~   67 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIG----GEPY--TLGLFDTAGQEDYDR-------LRP   67 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEEEC----CEEE--EEEEEECCCccchhh-------hhh
Confidence            5799999999999999999997653 2223222222111122211    1112  688999999976522       112


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH----------------HHHHH
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----------------LQSLT  245 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~----------------~~~l~  245 (310)
                      .+++.+|++++|+|.+++.+++... .|..++..+.   .+.|+++|+||+|+....+.                ...+.
T Consensus        68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a  144 (175)
T cd01874          68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA  144 (175)
T ss_pred             hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence            3566899999999999999998885 5777777654   36899999999998654221                11122


Q ss_pred             HHHHhcCCCccccCccCCHHHHHHHHhhc
Q 021615          246 EEILKIGCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       246 ~~l~~~g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                      +.+....+.++||+++.|++++|+.++..
T Consensus       145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~~  173 (175)
T cd01874         145 RDLKAVKYVECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             HHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence            22222456779999999999999988654

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.82  E-value=1.4e-19  Score=150.72  Aligned_cols=157  Identities=16%  Similarity=0.139  Sum_probs=106.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCC-CCCCCCCCcee-eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~-~~i~~~~~tT~-~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .||+++|.+|||||||+++|.+.. .....+..|+- +.....+...   ....  ..+.+|||||+....       ..
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~--~~l~i~Dt~G~~~~~-------~~   68 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVD---TDNT--VELFIFDSAGQELYS-------DM   68 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeC---CCCE--EEEEEEECCCHHHHH-------HH
Confidence            379999999999999999998642 22344444432 1111122221   1111  278999999975431       12


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHH-HHHHHh--cCCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL-TEEILK--IGCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l-~~~l~~--~g~~~~s  257 (310)
                      ...+++.+|++++|+|+++..+++.+..|.+.+..+.   .+.|+++|+||+|+.+..+..... ......  ..+.++|
T Consensus        69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  145 (164)
T cd04101          69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTS  145 (164)
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEe
Confidence            3345678999999999999888888888888887654   368999999999996542211111 111122  3455799


Q ss_pred             cCccCCHHHHHHHHhhc
Q 021615          258 SETELSSEDAVKSLSTE  274 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~  274 (310)
                      ++++.|++++|+.++..
T Consensus       146 a~~~~gi~~l~~~l~~~  162 (164)
T cd04101         146 ALRGVGYEEPFESLARA  162 (164)
T ss_pred             CCCCCChHHHHHHHHHH
Confidence            99999999999998764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04171 SelB SelB subfamily

Probab=99.82  E-value=4.1e-19  Score=147.41  Aligned_cols=150  Identities=22%  Similarity=0.167  Sum_probs=99.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .|+++|.+|||||||+++|++.....   ...+.+|.......+....       +..+.+|||||+.++       ...
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~~~DtpG~~~~-------~~~   67 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-------GKRLGFIDVPGHEKF-------IKN   67 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-------CcEEEEEECCChHHH-------HHH
Confidence            58999999999999999999754222   2234566655544443321       127899999998543       233


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHh-----cC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILK-----IG  252 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~-----~g  252 (310)
                      +...+..+|++++|+|+++....+....+ ..+...    ..+|+++|+||+|+.....   ..+++.+.+..     ..
T Consensus        68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~-~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (164)
T cd04171          68 MLAGAGGIDLVLLVVAADEGIMPQTREHL-EILELL----GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAP  142 (164)
T ss_pred             HHhhhhcCCEEEEEEECCCCccHhHHHHH-HHHHHh----CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCc
Confidence            44567789999999999863222222222 223321    1249999999999976421   23444455543     34


Q ss_pred             CCccccCccCCHHHHHHHHh
Q 021615          253 CDKVTSETELSSEDAVKSLS  272 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~  272 (310)
                      +.++|++++.|+++++..+.
T Consensus       143 ~~~~Sa~~~~~v~~l~~~l~  162 (164)
T cd04171         143 IFPVSAVTGEGIEELKEYLD  162 (164)
T ss_pred             EEEEeCCCCcCHHHHHHHHh
Confidence            55689999999999998874

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.82  E-value=1.8e-19  Score=149.62  Aligned_cols=157  Identities=15%  Similarity=0.082  Sum_probs=105.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|+|||||++++++........+..+.+.....+.....  ..  ...+.+|||||+.++.       ....
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~--~~~~~i~D~~G~~~~~-------~~~~   69 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQS--DE--DVRLMLWDTAGQEEFD-------AITK   69 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCC--CC--EEEEEEeeCCchHHHH-------HhHH
Confidence            37999999999999999999987532211111112111112222100  01  1268999999986542       2234


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~sa~  259 (310)
                      .+++.+|++++|+|++++.+++.+..|...+....   .+.|+++|+||+|+..... ..++..+.....  .+.++|++
T Consensus        70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  146 (162)
T cd04106          70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVK  146 (162)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECC
Confidence            45679999999999999888888888888776543   3789999999999865322 112222223333  45569999


Q ss_pred             ccCCHHHHHHHHhh
Q 021615          260 TELSSEDAVKSLST  273 (310)
Q Consensus       260 ~~~gi~~l~~~l~~  273 (310)
                      ++.|++++|..++.
T Consensus       147 ~~~~v~~l~~~l~~  160 (162)
T cd04106         147 DDFNVTELFEYLAE  160 (162)
T ss_pred             CCCCHHHHHHHHHH
Confidence            99999999999864

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.82  E-value=2.3e-19  Score=149.00  Aligned_cols=158  Identities=19%  Similarity=0.147  Sum_probs=109.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||+++|++........+..+.......+....    ..  ..+.+|||||..+..       ....
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~l~D~~G~~~~~-------~~~~   67 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDG----KR--VKLQIWDTAGQERFR-------SITS   67 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC----EE--EEEEEEECCChHHHH-------HHHH
Confidence            4799999999999999999998865333333333322222232221    11  268899999975432       2223


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~  259 (310)
                      ..+..||++++|+|++++.+++.+..|..++..+..  .+.|+++|+||+|+....+ ..+...+....  +.+.++|+.
T Consensus        68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  145 (164)
T smart00175       68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAK  145 (164)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCC
Confidence            445689999999999998888888888888877643  3789999999999875321 11222222233  345668999


Q ss_pred             ccCCHHHHHHHHhhcc
Q 021615          260 TELSSEDAVKSLSTEG  275 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~  275 (310)
                      ++.|+.+++..+....
T Consensus       146 ~~~~i~~l~~~i~~~~  161 (164)
T smart00175      146 TNTNVEEAFEELAREI  161 (164)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999987654

Rab GTPases are implicated in vesicle trafficking.

>cd04154 Arl2 Arl2 subfamily

Probab=99.82  E-value=1.7e-19  Score=152.18  Aligned_cols=151  Identities=20%  Similarity=0.217  Sum_probs=102.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|++|||||||+++|++.....  + .+|.......+....        ..+.+|||||+...       ...+.
T Consensus        15 ~kv~ivG~~~~GKTsL~~~l~~~~~~~--~-~~t~g~~~~~~~~~~--------~~l~l~D~~G~~~~-------~~~~~   76 (173)
T cd04154          15 MRILILGLDNAGKTTILKKLLGEDIDT--I-SPTLGFQIKTLEYEG--------YKLNIWDVGGQKTL-------RPYWR   76 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHccCCCCC--c-CCccccceEEEEECC--------EEEEEEECCCCHHH-------HHHHH
Confidence            679999999999999999999874321  1 112211222222221        26899999998543       22344


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------hcCCCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDK  255 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~~g~~~  255 (310)
                      .+++.+|++++|+|+++..++.....+...+.... ...+.|+++|+||+|+.... ..+++.+.+.       ...+.+
T Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~  154 (173)
T cd04154          77 NYFESTDALIWVVDSSDRLRLDDCKRELKELLQEE-RLAGATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRIQP  154 (173)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEEEe
Confidence            56779999999999998877776655555553321 12478999999999997542 2233443332       224667


Q ss_pred             cccCccCCHHHHHHHHhh
Q 021615          256 VTSETELSSEDAVKSLST  273 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~  273 (310)
                      +||+++.|++++|.+++.
T Consensus       155 ~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         155 CSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             ccCCCCcCHHHHHHHHhc
Confidence            999999999999998754

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04117 Rab15 Rab15 subfamily

Probab=99.82  E-value=2.1e-19  Score=149.92  Aligned_cols=153  Identities=18%  Similarity=0.189  Sum_probs=107.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeecc--ceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN--LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~--~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .+|+++|.+|+|||||++++++......  +.+|....  ...+....    ..  ..+.+|||||..+...       .
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~----~~--~~l~i~D~~g~~~~~~-------~   65 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS--HISTIGVDFKMKTIEVDG----IK--VRIQIWDTAGQERYQT-------I   65 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEECC----EE--EEEEEEeCCCcHhHHh-------h
Confidence            3799999999999999999997753222  12232221  12222211    11  2688999999865422       2


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV  256 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~  256 (310)
                      ...++..+|++++|+|.++..+++....|.+++..+..  .+.|+++|+||+|+....    +....+.+.+ ...+.++
T Consensus        66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~  142 (161)
T cd04117          66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQKRQVGDEQGNKLAKEY-GMDFFET  142 (161)
T ss_pred             HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCCCHHHHHHHHHHc-CCEEEEE
Confidence            23456789999999999999999999888888876542  368999999999986543    2233333222 2457779


Q ss_pred             ccCccCCHHHHHHHHhh
Q 021615          257 TSETELSSEDAVKSLST  273 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~  273 (310)
                      ||+++.|++++|..|+.
T Consensus       143 Sa~~~~~v~~~f~~l~~  159 (161)
T cd04117         143 SACTNSNIKESFTRLTE  159 (161)
T ss_pred             eCCCCCCHHHHHHHHHh
Confidence            99999999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.82  E-value=2e-19  Score=152.08  Aligned_cols=152  Identities=18%  Similarity=0.131  Sum_probs=103.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|++|+|||||+++|+..+...   ..+|...+...+....        ..+.+|||||+.+.       ...+
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~---~~~t~~~~~~~~~~~~--------~~~~l~D~~G~~~~-------~~~~   76 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH---TSPTIGSNVEEIVYKN--------IRFLMWDIGGQESL-------RSSW   76 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC---cCCccccceEEEEECC--------eEEEEEECCCCHHH-------HHHH
Confidence            4689999999999999999998765321   1234433333443332        27899999998543       3345


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-----h--cCCC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGCD  254 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-----~--~g~~  254 (310)
                      ..+++.||++++|+|+++...+.....++.++.... ...+.|+++++||+|+..... .+++.+.+.     .  ..+.
T Consensus        77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~-~~~~~p~viv~NK~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~  154 (174)
T cd04153          77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHE-DLRKAVLLVLANKQDLKGAMT-PAEISESLGLTSIRDHTWHIQ  154 (174)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEEE
Confidence            566789999999999998766655544444433221 224689999999999875321 233333332     1  1245


Q ss_pred             ccccCccCCHHHHHHHHhh
Q 021615          255 KVTSETELSSEDAVKSLST  273 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~  273 (310)
                      ++||+++.|++++|+.|+.
T Consensus       155 ~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         155 GCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             ecccCCCCCHHHHHHHHhc
Confidence            6999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.82  E-value=1.1e-19  Score=169.90  Aligned_cols=185  Identities=19%  Similarity=0.240  Sum_probs=130.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc----
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK----  175 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~----  175 (310)
                      ...+|+++|.||+|||||+|+|++.+..+ ++.++||+++....+..+..        ++.++||+|+.+......    
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--------~~~liDTAGiRrk~ki~e~~E~  248 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--------KYVLIDTAGIRRKGKITESVEK  248 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--------EEEEEECCCCCcccccccceEE
Confidence            46889999999999999999999998776 99999999988777775532        799999999976533222    


Q ss_pred             -hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-hHHHHHHH----HHH
Q 021615          176 -GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTE----EIL  249 (310)
Q Consensus       176 -~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~l~~----~l~  249 (310)
                       +.. ..+..+++||++++|+|++.+.+.++.+.. ..+..     .++++++|+||+|+.+.+ ...+.+.+    .+.
T Consensus       249 ~Sv~-rt~~aI~~a~vvllviDa~~~~~~qD~~ia-~~i~~-----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~  321 (444)
T COG1160         249 YSVA-RTLKAIERADVVLLVIDATEGISEQDLRIA-GLIEE-----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLP  321 (444)
T ss_pred             Eeeh-hhHhHHhhcCEEEEEEECCCCchHHHHHHH-HHHHH-----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhc
Confidence             222 335778999999999999998888776544 44443     479999999999997642 23344433    333


Q ss_pred             hcCCC---ccccCccCCHHHHHHHHhhccCCcccccccccccchhhhhhhhcCC
Q 021615          250 KIGCD---KVTSETELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPR  300 (310)
Q Consensus       250 ~~g~~---~~sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~le~~~~  300 (310)
                      .+++.   .+||+++.++..+|+.+..........-.........+......|+
T Consensus       322 ~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~~~pP  375 (444)
T COG1160         322 FLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAKHPP  375 (444)
T ss_pred             cccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCC
Confidence            34433   3899999999999988655443333333333333344444444443

>cd04116 Rab9 Rab9 subfamily

Probab=99.82  E-value=3.4e-19  Score=149.51  Aligned_cols=160  Identities=16%  Similarity=0.086  Sum_probs=107.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|+|||||++++.+........+..+.......+..+.    ..  ..+.+|||||+.+..       ...
T Consensus         5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~l~i~D~~G~~~~~-------~~~   71 (170)
T cd04116           5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG----HF--VTLQIWDTAGQERFR-------SLR   71 (170)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECC----eE--EEEEEEeCCChHHHH-------HhH
Confidence            46899999999999999999997653322222111111111222111    11  268899999986542       123


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCC--CCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc---CCCcc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKV  256 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~--~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~---g~~~~  256 (310)
                      ..+++.+|++++|+|+++..+++.+..|..++..+...  ..+.|+++|+||+|+.......++..+.....   .+.++
T Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  151 (170)
T cd04116          72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFET  151 (170)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEE
Confidence            34567899999999999988888888888877654321  23689999999999864322233333333433   35568


Q ss_pred             ccCccCCHHHHHHHHhhc
Q 021615          257 TSETELSSEDAVKSLSTE  274 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~  274 (310)
                      ||+++.|+.++|..++..
T Consensus       152 Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         152 SAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            999999999999998653

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=2.7e-19  Score=172.46  Aligned_cols=160  Identities=21%  Similarity=0.284  Sum_probs=116.2

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH-
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-  178 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~-  178 (310)
                      ...+|+++|.+|+|||||+|+|++.+.. +++.++||.+.....+....        ..+.+|||||+.+.......+. 
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--------~~~~lvDT~G~~~~~~~~~~~e~  243 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--------QKYTLIDTAGIRRKGKVTEGVEK  243 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--------eeEEEEECCCCCCCcchhhHHHH
Confidence            4578999999999999999999988754 48889999877655554332        2689999999977654333222 


Q ss_pred             ---HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH----h-
Q 021615          179 ---RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----K-  250 (310)
Q Consensus       179 ---~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~----~-  250 (310)
                         ...+++++.||++++|+|++++.+.++.. +...+..     .++|+++|+||+|+.+.. ..+++.+.+.    . 
T Consensus       244 ~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~-----~~~~~ivv~NK~Dl~~~~-~~~~~~~~~~~~l~~~  316 (435)
T PRK00093        244 YSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE-----AGRALVIVVNKWDLVDEK-TMEEFKKELRRRLPFL  316 (435)
T ss_pred             HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCcEEEEEECccCCCHH-HHHHHHHHHHHhcccc
Confidence               22346788999999999999887776654 3344443     368999999999998542 2333433333    2 


Q ss_pred             --cCCCccccCccCCHHHHHHHHhhcc
Q 021615          251 --IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       251 --~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                        ..+..+||+++.|+.+++..+....
T Consensus       317 ~~~~i~~~SA~~~~gv~~l~~~i~~~~  343 (435)
T PRK00093        317 DYAPIVFISALTGQGVDKLLEAIDEAY  343 (435)
T ss_pred             cCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence              3455689999999999998876533

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.82  E-value=1.8e-19  Score=153.54  Aligned_cols=154  Identities=19%  Similarity=0.179  Sum_probs=103.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++++.....  .+ .+|...+...+....        ..+.+|||||+.+.       ...+
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~-~pt~g~~~~~~~~~~--------~~~~i~D~~Gq~~~-------~~~~   78 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKN--------ISFTVWDVGGQDKI-------RPLW   78 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCc--cc-cCCcceeEEEEEECC--------EEEEEEECCCCHHH-------HHHH
Confidence            368999999999999999999865421  11 223222222233221        27899999998543       2344


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-------CCC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GCD  254 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-------g~~  254 (310)
                      ..+++.+|++++|+|+++..++.....++..+.. .....+.|+++|+||+|+....+ .+++.+.+.-.       .+.
T Consensus        79 ~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~-~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~l~l~~~~~~~~~~~  156 (181)
T PLN00223         79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQ  156 (181)
T ss_pred             HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhc-CHhhCCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCceEEE
Confidence            4567899999999999987776655444333321 11224689999999999976532 34445444311       123


Q ss_pred             ccccCccCCHHHHHHHHhhcc
Q 021615          255 KVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ++||++|+|+.++|++|+...
T Consensus       157 ~~Sa~~g~gv~e~~~~l~~~~  177 (181)
T PLN00223        157 STCATSGEGLYEGLDWLSNNI  177 (181)
T ss_pred             eccCCCCCCHHHHHHHHHHHH
Confidence            589999999999999997665

>cd00879 Sar1 Sar1 subfamily

Probab=99.82  E-value=2.2e-19  Score=153.58  Aligned_cols=153  Identities=24%  Similarity=0.263  Sum_probs=106.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|++|||||||+++|++....   ...+|..+..+.+....        ..+.+|||||+...       ...+
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~--------~~~~l~D~~G~~~~-------~~~~   80 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGN--------IKFKTFDLGGHEQA-------RRLW   80 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECC--------EEEEEEECCCCHHH-------HHHH
Confidence            478999999999999999999987642   12335555555555432        27899999997543       2234


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-----------
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-----------  250 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-----------  250 (310)
                      ..+++.+|++++|+|+++..++.....+..++.... ...+.|+++|+||+|+..... .+++.+.+..           
T Consensus        81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~  158 (190)
T cd00879          81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDE-ELANVPFLILGNKIDLPGAVS-EEELRQALGLYGTTTGKGVSL  158 (190)
T ss_pred             HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCc-cccCCCEEEEEeCCCCCCCcC-HHHHHHHhCcccccccccccc
Confidence            556789999999999998766655554544443321 224689999999999975322 2344443321           


Q ss_pred             -------cCCCccccCccCCHHHHHHHHhhc
Q 021615          251 -------IGCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       251 -------~g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                             ..+..+||+++.|++++|.+++..
T Consensus       159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             cccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence                   235568999999999999998653

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04176 Rap2 Rap2 subgroup

Probab=99.82  E-value=2.1e-19  Score=149.58  Aligned_cols=157  Identities=17%  Similarity=0.175  Sum_probs=105.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||++++....... .+..|........+..+.    .  ...+.+|||||..++..    +   +.
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~----~--~~~l~i~Dt~G~~~~~~----~---~~   67 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIE-KYDPTIEDFYRKEIEVDS----S--PSVLEILDTAGTEQFAS----M---RD   67 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCchhheEEEEEEECC----E--EEEEEEEECCCcccccc----h---HH
Confidence            479999999999999999999765322 122222111112222211    1  11578999999876532    2   22


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~sa  258 (310)
                      .+++.+|++++|+|.++..++++...|...+..... ..+.|+++|+||+|+.....    ....+.+.+ ...+.++||
T Consensus        68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa  145 (163)
T cd04176          68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESEREVSSAEGRALAEEW-GCPFMETSA  145 (163)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcCccCHHHHHHHHHHh-CCEEEEecC
Confidence            345689999999999998888888888888776432 24789999999999864322    112222211 234556899


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|+.++|..++..+
T Consensus       146 ~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         146 KSKTMVNELFAEIVRQM  162 (163)
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            99999999999987543

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.82  E-value=1.2e-19  Score=151.58  Aligned_cols=157  Identities=20%  Similarity=0.231  Sum_probs=105.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      +|+++|.+|||||||+++++.... ...++.++.......+..+.    .  ...+.+|||||+.....      .....
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~----~--~~~~~i~D~~g~~~~~~------~~~~~   67 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTIDG----E--QVSLEILDTAGQQQADT------EQLER   67 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEECC----E--EEEEEEEECCCCccccc------chHHH
Confidence            589999999999999999986542 23344443222222222111    1  11588999999874211      12234


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCccccC
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTSE  259 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~sa~  259 (310)
                      +++.+|++++|+|+++..+++.+..|...+..+.....+.|+++|+||+|+....    +....+.+.+ ...+.++|++
T Consensus        68 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sa~  146 (165)
T cd04146          68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASEL-GCLFFEVSAA  146 (165)
T ss_pred             HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHc-CCEEEEeCCC
Confidence            5678999999999999988888888888877654212478999999999985431    1222333222 2345578999


Q ss_pred             cc-CCHHHHHHHHhhc
Q 021615          260 TE-LSSEDAVKSLSTE  274 (310)
Q Consensus       260 ~~-~gi~~l~~~l~~~  274 (310)
                      ++ .|+.++|..++..
T Consensus       147 ~~~~~v~~~f~~l~~~  162 (165)
T cd04146         147 EDYDGVHSVFHELCRE  162 (165)
T ss_pred             CCchhHHHHHHHHHHH
Confidence            99 5999999998754

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01895 EngA2 EngA2 subfamily

Probab=99.82  E-value=6.5e-19  Score=146.98  Aligned_cols=157  Identities=22%  Similarity=0.302  Sum_probs=108.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH---
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG---  178 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~---  178 (310)
                      .+|+++|.+|+|||||+|+|++..... .+.+++|.......+....        ..+.+|||||+.+..+....+.   
T Consensus         3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~iiDtpG~~~~~~~~~~~e~~~   74 (174)
T cd01895           3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--------KKYTLIDTAGIRRKGKVEEGIEKYS   74 (174)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--------eeEEEEECCCCccccchhccHHHHH
Confidence            579999999999999999999886443 6677777765544444332        2689999999976543322221   


Q ss_pred             -HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-hHHHHHHHHHHh------
Q 021615          179 -RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK------  250 (310)
Q Consensus       179 -~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~l~~~l~~------  250 (310)
                       .....++..+|++++|+|++++.+..... +...+..     .+.|+++|+||+|+.... ...+...+.+..      
T Consensus        75 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  148 (174)
T cd01895          75 VLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLILE-----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLD  148 (174)
T ss_pred             HHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh-----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhccccc
Confidence             12244567899999999999876655543 3333333     368999999999997652 223333333321      


Q ss_pred             -cCCCccccCccCCHHHHHHHHhh
Q 021615          251 -IGCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       251 -~g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                       ..+..+|++.+.|+.++++.+.+
T Consensus       149 ~~~~~~~Sa~~~~~i~~~~~~l~~  172 (174)
T cd01895         149 YAPIVFISALTGQGVDKLFDAIDE  172 (174)
T ss_pred             CCceEEEeccCCCCHHHHHHHHHH
Confidence             24555899999999999998754

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=4.3e-20  Score=153.64  Aligned_cols=159  Identities=18%  Similarity=0.141  Sum_probs=114.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC--CC---CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI--AD---YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  176 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i--~~---~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~  176 (310)
                      -.||+|+|..|||||||+-++...+...  .+   ..|-|..     +..+..      ..+|.||||+|++++    .+
T Consensus         5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tkt-----v~~~~~------~ikfeIWDTAGQERy----~s   69 (200)
T KOG0092|consen    5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKT-----VTVDDN------TIKFEIWDTAGQERY----HS   69 (200)
T ss_pred             eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEE-----EEeCCc------EEEEEEEEcCCcccc----cc
Confidence            4689999999999999999998765221  11   1122221     111111      127899999999987    34


Q ss_pred             HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CC
Q 021615          177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GC  253 (310)
Q Consensus       177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~  253 (310)
                      +...+   ++.|+++|+|+|+++.+++...+.|.++|+...+  .+.-+.+|+||+|+....+ ..++......+.  -+
T Consensus        70 lapMY---yRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~--~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~  144 (200)
T KOG0092|consen   70 LAPMY---YRGANAAIVVYDITDEESFEKAKNWVKELQRQAS--PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLF  144 (200)
T ss_pred             cccce---ecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC--CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEE
Confidence            44454   4589999999999999999999999999997644  3455667999999987322 234444444444  45


Q ss_pred             CccccCccCCHHHHHHHHhhccCCccc
Q 021615          254 DKVTSETELSSEDAVKSLSTEGGEADL  280 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~~~~~~  280 (310)
                      .++||+++.|++++|..++..+-....
T Consensus       145 ~ETSAKTg~Nv~~if~~Ia~~lp~~~~  171 (200)
T KOG0092|consen  145 FETSAKTGENVNEIFQAIAEKLPCSDP  171 (200)
T ss_pred             EEEecccccCHHHHHHHHHHhccCccc
Confidence            669999999999999999887755443

>cd04151 Arl1 Arl1 subfamily

Probab=99.82  E-value=2.3e-19  Score=148.99  Aligned_cols=149  Identities=17%  Similarity=0.178  Sum_probs=98.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      ||+++|.+|+|||||+++|...... . + .+|.......+.+..        ..+.+|||||+.++       ...+..
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~-~-~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~-------~~~~~~   62 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-T-T-IPTIGFNVETVTYKN--------LKFQVWDLGGQTSI-------RPYWRC   62 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-C-c-CCccCcCeEEEEECC--------EEEEEEECCCCHHH-------HHHHHH
Confidence            5899999999999999999765432 1 1 233333333333221        27899999998643       223455


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cCCCc
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK  255 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g~~~  255 (310)
                      ++..+|++++|+|+++...+..... +...+...  ...++|+++|+||+|+.+... ..++.+.+..       ..+.+
T Consensus        63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~  139 (158)
T cd04151          63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE--ELKGAVLLVFANKQDMPGALS-EAEISEKLGLSELKDRTWSIFK  139 (158)
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch--hhcCCcEEEEEeCCCCCCCCC-HHHHHHHhCccccCCCcEEEEE
Confidence            6789999999999987655443322 22222221  124689999999999975421 2333333321       12667


Q ss_pred             cccCccCCHHHHHHHHhh
Q 021615          256 VTSETELSSEDAVKSLST  273 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~  273 (310)
                      +|++++.|+.++|+.|++
T Consensus       140 ~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         140 TSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             eeccCCCCHHHHHHHHhc
Confidence            999999999999999864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.82  E-value=2.2e-19  Score=153.40  Aligned_cols=154  Identities=22%  Similarity=0.210  Sum_probs=106.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|||||||+++|.+.....  + .+|..+....+....        .++.+|||||+...       ...
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~--~-~~t~~~~~~~~~~~~--------~~~~~~D~~G~~~~-------~~~   77 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ--H-QPTQHPTSEELAIGN--------IKFTTFDLGGHQQA-------RRL   77 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCcc--c-CCccccceEEEEECC--------EEEEEEECCCCHHH-------HHH
Confidence            34789999999999999999999875322  1 234455555544322        27899999998543       224


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-----------
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----------  249 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-----------  249 (310)
                      +..++..+|++++|+|++++..+.....++.++... ....+.|+++|+||+|+..... .+++.+.+.           
T Consensus        78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~-~~~i~~~l~l~~~~~~~~~~  155 (184)
T smart00178       78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSD-EELATVPFLILGNKIDAPYAAS-EDELRYALGLTNTTGSKGKV  155 (184)
T ss_pred             HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCCC-HHHHHHHcCCCccccccccc
Confidence            456678999999999999877666655444444321 1224789999999999875321 334444442           


Q ss_pred             ---hcCCCccccCccCCHHHHHHHHhhc
Q 021615          250 ---KIGCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       250 ---~~g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                         ...+..+|++++.|+.+.+++|...
T Consensus       156 ~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      156 GVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             CCceeEEEEeecccCCChHHHHHHHHhh
Confidence               1124458999999999999998653

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.82  E-value=1.6e-19  Score=148.41  Aligned_cols=152  Identities=24%  Similarity=0.199  Sum_probs=109.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc-hHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~-~l~~~  180 (310)
                      .+|+++|++|+|||||+++|++.... +.+.+.+|.......+....        .++.+|||||+.+...... .....
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~DtpG~~~~~~~~~~~~~~~   73 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--------IPVRLIDTAGIRETEDEIEKIGIER   73 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--------EEEEEEECCCcCCCcchHHHHHHHH
Confidence            57999999999999999999988754 37788888766555554332        2789999999976532111 11123


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccCc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSET  260 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~  260 (310)
                      ....+.++|++++|+|++++.+..+...+..        ..++|+++|+||+|+.+....    ........+..+|+.+
T Consensus        74 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~~----~~~~~~~~~~~~Sa~~  141 (157)
T cd04164          74 AREAIEEADLVLFVIDASRGLDEEDLEILEL--------PADKPIIVVLNKSDLLPDSEL----LSLLAGKPIIAISAKT  141 (157)
T ss_pred             HHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--------hcCCCEEEEEEchhcCCcccc----ccccCCCceEEEECCC
Confidence            3456779999999999998777666554432        147999999999999865432    1111123456689999


Q ss_pred             cCCHHHHHHHHhhc
Q 021615          261 ELSSEDAVKSLSTE  274 (310)
Q Consensus       261 ~~gi~~l~~~l~~~  274 (310)
                      +.|+++++..+...
T Consensus       142 ~~~v~~l~~~l~~~  155 (157)
T cd04164         142 GEGLDELKEALLEL  155 (157)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999987653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.82  E-value=1.9e-19  Score=151.15  Aligned_cols=157  Identities=14%  Similarity=0.108  Sum_probs=107.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||+++++...... .+ .+|.......+....  ...  ...+.+|||||+.+...    +..   
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~-~~t~~~~~~~~~~~~--~~~--~~~l~i~Dt~G~~~~~~----~~~---   67 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEK-KY-VATLGVEVHPLDFHT--NRG--KIRFNVWDTAGQEKFGG----LRD---   67 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC-CC-CCceeeEEEEEEEEE--CCE--EEEEEEEECCCChhhcc----ccH---
Confidence            479999999999999999998654221 11 122222222221110  011  12689999999876532    222   


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hcCCCccccCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVTSET  260 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~g~~~~sa~~  260 (310)
                      .++..+|++++|+|+++..+++.+..|..++..+..   +.|+++|+||+|+.......+ ..+...  ...+.++||++
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~e~Sa~~  143 (166)
T cd00877          68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRKVKAK-QITFHRKKNLQYYEISAKS  143 (166)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccccCCHH-HHHHHHHcCCEEEEEeCCC
Confidence            235689999999999999999888889888887643   799999999999974321111 112222  34567799999


Q ss_pred             cCCHHHHHHHHhhccC
Q 021615          261 ELSSEDAVKSLSTEGG  276 (310)
Q Consensus       261 ~~gi~~l~~~l~~~~~  276 (310)
                      +.|++++|..|+..+.
T Consensus       144 ~~~v~~~f~~l~~~~~  159 (166)
T cd00877         144 NYNFEKPFLWLARKLL  159 (166)
T ss_pred             CCChHHHHHHHHHHHH
Confidence            9999999999986653

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04127 Rab27A Rab27a subfamily

Probab=99.82  E-value=2.4e-19  Score=151.77  Aligned_cols=166  Identities=16%  Similarity=0.046  Sum_probs=107.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCC----CccCCCceEEEeCCCCCccccCCchH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG----AEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~----~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      ..||+++|.+|||||||++++.+........+..+.+.....+......+    .......+.+|||||+.+..      
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------   77 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFR------   77 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHH------
Confidence            46899999999999999999998753221111111111111122111000    00111268999999985541      


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCC
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCD  254 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~  254 (310)
                       .....+++.+|++++|+|+++..++.++..|..++..+.. ..+.|+++|+||+|+.+... ..++..+.....  .+.
T Consensus        78 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~  155 (180)
T cd04127          78 -SLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYF  155 (180)
T ss_pred             -HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEE
Confidence             2233456789999999999999999999888888876432 12578999999999965321 112222222333  456


Q ss_pred             ccccCccCCHHHHHHHHhhcc
Q 021615          255 KVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ++||+++.|++++|..+....
T Consensus       156 e~Sak~~~~v~~l~~~l~~~~  176 (180)
T cd04127         156 ETSAATGTNVEKAVERLLDLV  176 (180)
T ss_pred             EEeCCCCCCHHHHHHHHHHHH
Confidence            799999999999999987543

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04133 Rop_like Rop subfamily

Probab=99.82  E-value=2.2e-19  Score=152.41  Aligned_cols=155  Identities=20%  Similarity=0.200  Sum_probs=107.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccc-eEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL-GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~-~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .||+++|.+++|||||+.++....... .+. +|..... ..+..+    +..  -++.+|||+|..++...    .   
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~-~~~-~Ti~~~~~~~~~~~----~~~--v~l~i~Dt~G~~~~~~~----~---   66 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYI-PTVFDNFSANVSVD----GNT--VNLGLWDTAGQEDYNRL----R---   66 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCC-CCC-CcceeeeEEEEEEC----CEE--EEEEEEECCCCcccccc----c---
Confidence            579999999999999999999765322 222 2221111 112211    112  27899999999776332    1   


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-----------hHHHHHHHHHH
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-----------DRLQSLTEEIL  249 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-----------~~~~~l~~~l~  249 (310)
                      ..+++.+|++++|+|.++..+++.+ ..|..++..+.   .+.|+++|+||+|+.+..           ...++..+...
T Consensus        67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~  143 (176)
T cd04133          67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA---PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK  143 (176)
T ss_pred             hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH
Confidence            2356789999999999999999987 67888887764   368999999999996431           11222222223


Q ss_pred             hc---CCCccccCccCCHHHHHHHHhhcc
Q 021615          250 KI---GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       250 ~~---g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ..   .+.++||+++.|++++|..++...
T Consensus       144 ~~~~~~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         144 QIGAAAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             HcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence            33   366799999999999999987654

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd00154 Rab Rab family

Probab=99.82  E-value=5.4e-19  Score=144.94  Aligned_cols=155  Identities=19%  Similarity=0.166  Sum_probs=107.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||+++|++........+.++.......+....    .  ...+.+||+||+...       .....
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~l~D~~g~~~~-------~~~~~   67 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG----K--TVKLQIWDTAGQERF-------RSITP   67 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC----E--EEEEEEEecCChHHH-------HHHHH
Confidence            3699999999999999999998875544333333322222232211    0  126899999998543       12334


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC-CcHhHHHHHHHHHHh--cCCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP-EARDRLQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~-~~~~~~~~l~~~l~~--~g~~~~sa~  259 (310)
                      ..++.+|++++|+|++++.+++....|...+..+..  ...|+++++||+|+. ......+.+.+....  ..+..+|++
T Consensus        68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  145 (159)
T cd00154          68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAK  145 (159)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecC
Confidence            456789999999999988778888888877776532  368999999999996 222223344444433  456668999


Q ss_pred             ccCCHHHHHHHHh
Q 021615          260 TELSSEDAVKSLS  272 (310)
Q Consensus       260 ~~~gi~~l~~~l~  272 (310)
                      ++.|+.+++..++
T Consensus       146 ~~~~i~~~~~~i~  158 (159)
T cd00154         146 TGENVEELFQSLA  158 (159)
T ss_pred             CCCCHHHHHHHHh
Confidence            9999999999875

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.82  E-value=2e-19  Score=172.76  Aligned_cols=159  Identities=26%  Similarity=0.365  Sum_probs=112.8

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  176 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~  176 (310)
                      .++...+|+++|.||||||||+|+|++.... ++++|+||.+.....+..+..        .+.+|||||+.+....-+.
T Consensus       199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--------~v~l~DTaG~~~~~~~ie~  270 (442)
T TIGR00450       199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--------LIKLLDTAGIREHADFVER  270 (442)
T ss_pred             HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--------EEEEeeCCCcccchhHHHH
Confidence            4567789999999999999999999998654 588999999877777665432        6899999999764321111


Q ss_pred             HH-HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCc
Q 021615          177 LG-RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDK  255 (310)
Q Consensus       177 l~-~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~  255 (310)
                      .+ .....+++.+|++++|+|++++.+.++.  |...+..     .++|+++|+||+|+... + .+.+.+.+ ...+..
T Consensus       271 ~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-----~~~piIlV~NK~Dl~~~-~-~~~~~~~~-~~~~~~  340 (442)
T TIGR00450       271 LGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK-----SKKPFILVLNKIDLKIN-S-LEFFVSSK-VLNSSN  340 (442)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh-----CCCCEEEEEECccCCCc-c-hhhhhhhc-CCceEE
Confidence            11 1234667899999999999987766654  4445432     36899999999999754 1 22222111 123456


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +|+++ .|+.+.++.|....
T Consensus       341 vSak~-~gI~~~~~~L~~~i  359 (442)
T TIGR00450       341 LSAKQ-LKIKALVDLLTQKI  359 (442)
T ss_pred             EEEec-CCHHHHHHHHHHHH
Confidence            89997 58888888776644

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04126 Rab20 Rab20 subfamily

Probab=99.82  E-value=1.7e-19  Score=158.30  Aligned_cols=154  Identities=21%  Similarity=0.171  Sum_probs=105.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||++++...+...  + .+|...........      .+  .+.+|||||+..+.    .+.   .
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~-~~Tig~~~~~~~~~------~~--~l~iwDt~G~e~~~----~l~---~   62 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD--T-VSTVGGAFYLKQWG------PY--NISIWDTAGREQFH----GLG---S   62 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC--C-CCccceEEEEEEee------EE--EEEEEeCCCcccch----hhH---H
Confidence            379999999999999999999876321  1 22322221111111      11  68999999987652    222   2


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC-------------------cH----h
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE-------------------AR----D  239 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~-------------------~~----~  239 (310)
                      .+++.+|++++|+|+++..+++.+..|+..+.....  .+.|+++|+||+|+..                   ..    +
T Consensus        63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~--~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~  140 (220)
T cd04126          63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTAN--EDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLE  140 (220)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccccccccccccccccccccCCHH
Confidence            346789999999999999999988877777665422  4689999999999865                   11    1


Q ss_pred             HHHHHHHHHHh-------------cCCCccccCccCCHHHHHHHHhhccC
Q 021615          240 RLQSLTEEILK-------------IGCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       240 ~~~~l~~~l~~-------------~g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      ....+.+.+..             ..+.++||++|.|+.++|..++....
T Consensus       141 e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         141 DAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             HHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            22233322221             23667999999999999999876553

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04123 Rab21 Rab21 subfamily

Probab=99.82  E-value=5e-19  Score=146.42  Aligned_cols=157  Identities=19%  Similarity=0.145  Sum_probs=107.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|++|+|||||+++|++........+.++.......+....    .  ...+.+|||||.....    .+..   
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~D~~g~~~~~----~~~~---   67 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGG----K--RIDLAIWDTAGQERYH----ALGP---   67 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECC----E--EEEEEEEECCchHHHH----HhhH---
Confidence            4799999999999999999998764332222222222222222111    1  1268999999975442    1222   


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~sa~  259 (310)
                      ..+..+|++++|+|+++..+++....|..++..+..  .+.|+++|+||+|+..... ..+.+.+.....+  +.++|++
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  145 (162)
T cd04123          68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG--NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAK  145 (162)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence            234689999999999998888888888888877654  2689999999999975322 1223333333333  4568999


Q ss_pred             ccCCHHHHHHHHhhc
Q 021615          260 TELSSEDAVKSLSTE  274 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~  274 (310)
                      ++.|+.++++.+...
T Consensus       146 ~~~gi~~~~~~l~~~  160 (162)
T cd04123         146 TGKGIEELFLSLAKR  160 (162)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999999998654

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.81  E-value=3.6e-19  Score=147.43  Aligned_cols=150  Identities=18%  Similarity=0.197  Sum_probs=102.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      ||+++|.+|||||||++++++.....   ..+|.......+.+..        ..+.+|||||+...       ...+..
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~---~~~t~~~~~~~~~~~~--------~~~~i~D~~G~~~~-------~~~~~~   62 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVT---TIPTIGFNVETVEYKN--------VSFTVWDVGGQDKI-------RPLWKH   62 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCcCcceEEEEECC--------EEEEEEECCCChhh-------HHHHHH
Confidence            68999999999999999999886321   1222222233333321        27899999998654       223344


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cCCCcc
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDKV  256 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g~~~~  256 (310)
                      .+..+|++++|+|++++..+.....++..+..... ..+.|+++|+||+|+..... .+++.+.+..       ..+.++
T Consensus        63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  140 (158)
T cd00878          63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGALS-VSELIEKLGLEKILGRRWHIQPC  140 (158)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccccC-HHHHHHhhChhhccCCcEEEEEe
Confidence            56789999999999988777766555555443221 34789999999999986431 2333333321       235569


Q ss_pred             ccCccCCHHHHHHHHhh
Q 021615          257 TSETELSSEDAVKSLST  273 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~  273 (310)
                      |++++.|++++|+.|..
T Consensus       141 Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         141 SAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             eCCCCCCHHHHHHHHhh
Confidence            99999999999998754

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.81  E-value=9.7e-19  Score=145.98  Aligned_cols=155  Identities=22%  Similarity=0.210  Sum_probs=104.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      +.|+++|.+|+|||||+|+|++........+++|.......+....   .  ....+.+|||||+.+.       .....
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~--~~~~~~iiDtpG~~~~-------~~~~~   68 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV---L--KIPGITFIDTPGHEAF-------TNMRA   68 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc---C--CcceEEEEeCCCcHHH-------HHHHH
Confidence            4699999999999999999998876555556667665555554321   0  0127899999998543       12223


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-hHH-HHHHHHHH--------hcC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRL-QSLTEEIL--------KIG  252 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~-~~l~~~l~--------~~g  252 (310)
                      ..+..+|++++|+|+++....+....+ ..+..     .++|+++|+||+|+.... +.. ..+.....        ...
T Consensus        69 ~~~~~~d~il~v~d~~~~~~~~~~~~~-~~~~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (168)
T cd01887          69 RGASLTDIAILVVAADDGVMPQTIEAI-KLAKA-----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQ  142 (168)
T ss_pred             HHHhhcCEEEEEEECCCCccHHHHHHH-HHHHH-----cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCc
Confidence            456789999999999886544443333 33443     368999999999987532 111 12211110        123


Q ss_pred             CCccccCccCCHHHHHHHHhhcc
Q 021615          253 CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +.++|+.++.|+.++++.+....
T Consensus       143 ~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         143 IVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             EEEeecccCCCHHHHHHHHHHhh
Confidence            55689999999999999986654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK04213 GTP-binding protein; Provisional

Probab=99.81  E-value=8.9e-19  Score=151.32  Aligned_cols=158  Identities=23%  Similarity=0.258  Sum_probs=103.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC----chH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----KGL  177 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~----~~l  177 (310)
                      .++|+++|.+|||||||+|+|++.....+..|++|..+....+.            .+.+|||||+.......    ..+
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~------------~~~l~Dt~G~~~~~~~~~~~~~~~   76 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG------------DFILTDLPGFGFMSGVPKEVQEKI   76 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec------------ceEEEeCCccccccccCHHHHHHH
Confidence            46899999999999999999999876667788888765432221            58999999974322111    111


Q ss_pred             HHH---HHH-HhhhcCEEEEecccCCCCcH----------HHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-hHHH
Q 021615          178 GRN---FLR-HLRRTRLLVHVIDAAAENPV----------NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQ  242 (310)
Q Consensus       178 ~~~---~~~-~l~~~d~il~VvD~s~~~~~----------~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~  242 (310)
                      ...   ++. .+..++++++|+|.++....          .....+...+..     .++|+++|+||+|+.... +..+
T Consensus        77 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~  151 (201)
T PRK04213         77 KDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNRDEVLD  151 (201)
T ss_pred             HHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcHHHHHH
Confidence            111   222 34567899999998653211          011223333333     368999999999997543 2344


Q ss_pred             HHHHHHHhc--------CCCccccCccCCHHHHHHHHhhccCC
Q 021615          243 SLTEEILKI--------GCDKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       243 ~l~~~l~~~--------g~~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      ++.+.+...        .+..+||+++ |+++++..+.....+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        152 EIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            444444310        2456899999 999999999876543

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.81  E-value=2.9e-19  Score=156.95  Aligned_cols=157  Identities=13%  Similarity=0.073  Sum_probs=108.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ..||+++|.+|||||||+++++..+...  .+..+.+...  ..+...    ...  ..+.+|||||..++.    .+  
T Consensus        13 ~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~--~~~~~~----~~~--~~l~i~Dt~G~~~~~----~~--   78 (219)
T PLN03071         13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTN----CGK--IRFYCWDTAGQEKFG----GL--   78 (219)
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEE--EEEEEC----CeE--EEEEEEECCCchhhh----hh--
Confidence            3689999999999999999988665322  1111112111  111111    011  278999999987652    12  


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hcCCCccc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVT  257 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~g~~~~s  257 (310)
                       +..+++.+|++|+|+|.++..+++.+..|..++..+.   .+.|+++|+||+|+.......+.+ ....  .+.+.++|
T Consensus        79 -~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~S  153 (219)
T PLN03071         79 -RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEIS  153 (219)
T ss_pred             -hHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcC
Confidence             2234678999999999999999999988988887654   368999999999986432111222 2222  33456799


Q ss_pred             cCccCCHHHHHHHHhhccCC
Q 021615          258 SETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~~~  277 (310)
                      |+++.|+.++|..++....+
T Consensus       154 Ak~~~~i~~~f~~l~~~~~~  173 (219)
T PLN03071        154 AKSNYNFEKPFLYLARKLAG  173 (219)
T ss_pred             CCCCCCHHHHHHHHHHHHHc
Confidence            99999999999999876643

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.81  E-value=5.4e-19  Score=149.03  Aligned_cols=159  Identities=16%  Similarity=0.053  Sum_probs=105.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCce-eeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT-~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .||+++|.+|||||||++++.+.... ..|..|. .......+....    .  ...+.+|||||+.++..       ..
T Consensus         1 ~ki~ivG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~----~--~~~l~i~Dt~G~~~~~~-------~~   66 (170)
T cd04108           1 SKVIVVGDLSVGKTCLINRFCKDVFD-KNYKATIGVDFEMERFEILG----V--PFSLQLWDTAGQERFKC-------IA   66 (170)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECC----E--EEEEEEEeCCChHHHHh-------hH
Confidence            37999999999999999999987532 2221121 121112222211    1  12689999999865421       23


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---HHHHHHHHHhc--CCCcc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEILKI--GCDKV  256 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~l~~~l~~~--g~~~~  256 (310)
                      ..+++.+|++++|+|+++..+++....|..++...... ...|+++|+||+|+.+..+.   .+........+  .+.++
T Consensus        67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~  145 (170)
T cd04108          67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSV  145 (170)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEE
Confidence            35567999999999999888888888888877543211 24678999999998653221   11122222333  34579


Q ss_pred             ccCccCCHHHHHHHHhhccC
Q 021615          257 TSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~~  276 (310)
                      ||+++.|++++|..+++.+.
T Consensus       146 Sa~~g~~v~~lf~~l~~~~~  165 (170)
T cd04108         146 SALSGENVREFFFRVAALTF  165 (170)
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999877653

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04110 Rab35 Rab35 subfamily

Probab=99.81  E-value=2.4e-19  Score=154.96  Aligned_cols=158  Identities=16%  Similarity=0.103  Sum_probs=108.6

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceee--ccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLM--PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~--~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ..+|+++|++|||||||+++|.+...... + .+|..  .....+....    .  ...+.+|||||+....       .
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~-~-~~t~~~~~~~~~~~~~~----~--~~~l~l~D~~G~~~~~-------~   70 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGS-Y-ITTIGVDFKIRTVEING----E--RVKLQIWDTAGQERFR-------T   70 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCC-c-CccccceeEEEEEEECC----E--EEEEEEEeCCCchhHH-------H
Confidence            57899999999999999999998753211 1 12221  1111222111    1  1268899999985542       2


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~  256 (310)
                      ....++..++++++|+|++++.+++.+..|.+.+....   ...|+++|+||+|+...... .++..+....  ..+.++
T Consensus        71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  147 (199)
T cd04110          71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFET  147 (199)
T ss_pred             HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence            33456678999999999999888888888888887643   36899999999999754221 1222222233  345679


Q ss_pred             ccCccCCHHHHHHHHhhccCC
Q 021615          257 TSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      |++++.|+.++|..+......
T Consensus       148 Sa~~~~gi~~lf~~l~~~~~~  168 (199)
T cd04110         148 SAKENINVEEMFNCITELVLR  168 (199)
T ss_pred             ECCCCcCHHHHHHHHHHHHHH
Confidence            999999999999998776543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01862 Rab7 Rab7 subfamily

Probab=99.81  E-value=4.7e-19  Score=148.44  Aligned_cols=161  Identities=17%  Similarity=0.139  Sum_probs=104.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|++|||||||++++++........+..+.+.....+....    ..  ..+.+|||||+....       ....
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~~~D~~g~~~~~-------~~~~   67 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD----KL--VTLQIWDTAGQERFQ-------SLGV   67 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC----EE--EEEEEEeCCChHHHH-------hHHH
Confidence            3799999999999999999998763321111111111111222111    11  267899999985442       1233


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh---cCCCcc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEARD-RLQSLTEEILK---IGCDKV  256 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~---~g~~~~  256 (310)
                      .+++.||++++|+|++++.+++....|.+++.....  ...+.|+++|+||+|+..... ..+........   ..+.++
T Consensus        68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (172)
T cd01862          68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFET  147 (172)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEE
Confidence            456789999999999988777777777665543221  123689999999999973211 12333333333   346668


Q ss_pred             ccCccCCHHHHHHHHhhccC
Q 021615          257 TSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~~  276 (310)
                      |+.++.|++++++.++..+.
T Consensus       148 Sa~~~~gv~~l~~~i~~~~~  167 (172)
T cd01862         148 SAKEAINVEQAFETIARKAL  167 (172)
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999876553

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.81  E-value=3.8e-19  Score=150.65  Aligned_cols=154  Identities=19%  Similarity=0.182  Sum_probs=102.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||++++..... .. + .+|.......+....        ..+.+|||||+.+.       ...+
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~~-~-~~t~~~~~~~~~~~~--------~~l~l~D~~G~~~~-------~~~~   74 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGES-VT-T-IPTIGFNVETVTYKN--------ISFTVWDVGGQDKI-------RPLW   74 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCC-CC-c-CCccccceEEEEECC--------EEEEEEECCCChhh-------HHHH
Confidence            46899999999999999999975432 11 1 123222222232211        27899999998654       2233


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cCCC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCD  254 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g~~  254 (310)
                      ..+++.||++++|+|++++.+++....++..+... ....+.|+++|+||+|+.+... .+++.+.+..       ..+.
T Consensus        75 ~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~  152 (175)
T smart00177       75 RHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNE-DELRDAVILVFANKQDLPDAMK-AAEITEKLGLHSIRDRNWYIQ  152 (175)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhC-HhhcCCcEEEEEeCcCcccCCC-HHHHHHHhCccccCCCcEEEE
Confidence            44578999999999999887777766555555321 1123689999999999975422 2333333321       1233


Q ss_pred             ccccCccCCHHHHHHHHhhcc
Q 021615          255 KVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ++||++|.|+.++|++|+..+
T Consensus       153 ~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      153 PTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             EeeCCCCCCHHHHHHHHHHHh
Confidence            589999999999999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04111 Rab39 Rab39 subfamily

Probab=99.81  E-value=3.8e-19  Score=155.26  Aligned_cols=159  Identities=19%  Similarity=0.148  Sum_probs=108.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||+++|++........+..+.+.....+....   ...  ..+.+|||||+....       ....
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~---~~~--~~l~i~Dt~G~~~~~-------~~~~   70 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEP---GVR--IKLQLWDTAGQERFR-------SITR   70 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECC---CCE--EEEEEEeCCcchhHH-------HHHH
Confidence            6899999999999999999998764332222211121112222111   111  268999999986542       1223


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~sa  258 (310)
                      .+++.+|++++|+|++++.+++.+..|..++..+.. ....|+++|+||+|+....    +....+.+.+. ..+.++|+
T Consensus        71 ~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa  148 (211)
T cd04111          71 SYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSA  148 (211)
T ss_pred             HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeC
Confidence            456789999999999999899998888888765432 1346789999999997532    22333333322 45677999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|+.++|..++...
T Consensus       149 k~g~~v~e~f~~l~~~~  165 (211)
T cd04111         149 RTGDNVEEAFELLTQEI  165 (211)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999988754

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.81  E-value=4e-19  Score=156.97  Aligned_cols=157  Identities=17%  Similarity=0.151  Sum_probs=106.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..||+++|.+|||||||++++++.... ..+..|........+..+    +..  ..+.||||+|..++.    .+.   
T Consensus        13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~-~~y~pTi~~~~~~~i~~~----~~~--v~l~iwDTaG~e~~~----~~~---   78 (232)
T cd04174          13 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTAGLETE----EQR--VELSLWDTSGSPYYD----NVR---   78 (232)
T ss_pred             eEEEEEECCCCCcHHHHHHHHhcCCCC-CCcCCceeeeeEEEEEEC----CEE--EEEEEEeCCCchhhH----HHH---
Confidence            368999999999999999999976422 222222111111112211    112  278999999986542    122   


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHH-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc------------H-hHHHHHHHH
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEA------------R-DRLQSLTEE  247 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~-~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------------~-~~~~~l~~~  247 (310)
                      ..+++.||++++|+|+++..+++. ...|..++..+.+   +.|+++|+||+|+...            . -..++..+.
T Consensus        79 ~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~  155 (232)
T cd04174          79 PLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAL  155 (232)
T ss_pred             HHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHH
Confidence            235679999999999999999987 4788888887643   6799999999998631            0 112233333


Q ss_pred             HHhcC---CCccccCccC-CHHHHHHHHhhcc
Q 021615          248 ILKIG---CDKVTSETEL-SSEDAVKSLSTEG  275 (310)
Q Consensus       248 l~~~g---~~~~sa~~~~-gi~~l~~~l~~~~  275 (310)
                      ....+   +.++||+++. |++++|..++...
T Consensus       156 a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~  187 (232)
T cd04174         156 AKQLGAEVYLECSAFTSEKSIHSIFRSASLLC  187 (232)
T ss_pred             HHHcCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence            34444   4579999998 8999999987654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01892 Miro2 Miro2 subfamily

Probab=99.81  E-value=2.4e-19  Score=151.05  Aligned_cols=159  Identities=18%  Similarity=0.096  Sum_probs=105.6

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeec-cceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP-NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~-~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      |..++|+++|.+|||||||++++++....+..+..|+... ....+..+.    .  ...+.+||++|..+...      
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~----~--~~~l~~~d~~g~~~~~~------   69 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYG----Q--EKYLILREVGEDEVAIL------   69 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECC----e--EEEEEEEecCCcccccc------
Confidence            4567899999999999999999998764423343333211 112222221    1  12688999999876522      


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCC
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCD  254 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~  254 (310)
                       ....+++.||++++|+|++++.+++.+..|.+.+..    ..+.|+++|+||+|+.+...    ..+++.+.+....+.
T Consensus        70 -~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  144 (169)
T cd01892          70 -LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM----LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPL  144 (169)
T ss_pred             -cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc----CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCE
Confidence             122345799999999999987777666666555432    13689999999999965422    123333322211235


Q ss_pred             ccccCccCCHHHHHHHHhhcc
Q 021615          255 KVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ++||+++.|+.++|..++..+
T Consensus       145 ~~Sa~~~~~v~~lf~~l~~~~  165 (169)
T cd01892         145 HFSSKLGDSSNELFTKLATAA  165 (169)
T ss_pred             EEEeccCccHHHHHHHHHHHh
Confidence            699999999999999987654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PLN03110 Rab GTPase; Provisional

Probab=99.81  E-value=3.3e-19  Score=156.23  Aligned_cols=159  Identities=18%  Similarity=0.105  Sum_probs=111.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...||+++|.+|||||||+++|++........+....+.....+..+.    ..  ..+.+|||||+.+.       ...
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~----~~--~~l~l~Dt~G~~~~-------~~~   77 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG----KT--VKAQIWDTAGQERY-------RAI   77 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC----EE--EEEEEEECCCcHHH-------HHH
Confidence            456899999999999999999998764332222222222222232221    11  27899999998654       223


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCcc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKV  256 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~  256 (310)
                      +..+++.++++++|+|+++..+++.+..|+..+..+..  .+.|+++|+||+|+.....    ....+... ..+.+.++
T Consensus        78 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~-~~~~~~e~  154 (216)
T PLN03110         78 TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNHLRSVAEEDGQALAEK-EGLSFLET  154 (216)
T ss_pred             HHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcccccCCCHHHHHHHHHH-cCCEEEEE
Confidence            34456789999999999999999998888888876543  4689999999999864322    22222221 23456779


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|+.++|..++...
T Consensus       155 SA~~g~~v~~lf~~l~~~i  173 (216)
T PLN03110        155 SALEATNVEKAFQTILLEI  173 (216)
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999999987644

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.81  E-value=6.2e-19  Score=146.55  Aligned_cols=155  Identities=15%  Similarity=0.102  Sum_probs=105.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .||+++|++|||||||+++|++.+...  .+..+.+...  ..+..+.    .  ...+.+|||||..+..       ..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~v~~~~----~--~~~~~i~D~~G~~~~~-------~~   66 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLT--QTVNLDD----T--TVKFEIWDTAGQERYR-------SL   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEE--EEEEECC----E--EEEEEEEeCCchHHHH-------HH
Confidence            579999999999999999999886433  2222211111  1222111    1  1268999999975431       12


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~s  257 (310)
                      ...+++.+|++++|+|++++.+++....|...+.....  ...|+++++||+|+..... ..+...+....  ..+.++|
T Consensus        67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  144 (163)
T cd01860          67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETS  144 (163)
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEE
Confidence            22345689999999999998888888888887776432  4689999999999874211 12223333333  3466699


Q ss_pred             cCccCCHHHHHHHHhhc
Q 021615          258 SETELSSEDAVKSLSTE  274 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~  274 (310)
                      ++++.|+.+++..++..
T Consensus       145 a~~~~~v~~l~~~l~~~  161 (163)
T cd01860         145 AKTGENVNELFTEIAKK  161 (163)
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999998764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04131 Rnd Rnd subfamily

Probab=99.81  E-value=3.2e-19  Score=151.70  Aligned_cols=155  Identities=14%  Similarity=0.134  Sum_probs=105.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||++++.+.... ..+..|........+..+    +..  -.+.+|||||...+...       ..
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~----~~~--~~l~iwDt~G~~~~~~~-------~~   67 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYP-ETYVPTVFENYTASFEID----EQR--IELSLWDTSGSPYYDNV-------RP   67 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCC-CCcCCceEEEEEEEEEEC----CEE--EEEEEEECCCchhhhhc-------ch
Confidence            47999999999999999999977532 222222211111112211    112  27899999998655321       12


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc----------------HhHHHHHH
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEA----------------RDRLQSLT  245 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~----------------~~~~~~l~  245 (310)
                      .+++.||++++|+|.+++.+++.+ ..|..++..+.+   +.|+++|+||+|+.+.                .+..+++.
T Consensus        68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a  144 (178)
T cd04131          68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA  144 (178)
T ss_pred             hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence            346789999999999999999985 788888887653   6899999999998541                11223333


Q ss_pred             HHHHhcCCCccccCccCC-HHHHHHHHhhc
Q 021615          246 EEILKIGCDKVTSETELS-SEDAVKSLSTE  274 (310)
Q Consensus       246 ~~l~~~g~~~~sa~~~~g-i~~l~~~l~~~  274 (310)
                      +.+....+.++||+++.+ ++++|..+...
T Consensus       145 ~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~  174 (178)
T cd04131         145 KQLGAEIYLECSAFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             HHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence            322222356799999995 99999987663

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.81  E-value=3.8e-19  Score=149.45  Aligned_cols=150  Identities=23%  Similarity=0.228  Sum_probs=102.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      +|+++|++|||||||+++|++....  . ..+|.......+....        ..+.+|||||..+.       ...+..
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~--~-~~~t~g~~~~~~~~~~--------~~~~i~D~~G~~~~-------~~~~~~   62 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPK--K-VAPTVGFTPTKLRLDK--------YEVCIFDLGGGANF-------RGIWVN   62 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCc--c-ccCcccceEEEEEECC--------EEEEEEECCCcHHH-------HHHHHH
Confidence            4899999999999999999976321  1 1223322222333221        27899999997543       334566


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHH-----HH-----hcCC
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEE-----IL-----KIGC  253 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~-----l~-----~~g~  253 (310)
                      +++.||+++||+|+++..+++....++..+.... ...++|+++|+||+|+...... .++.+.     +.     ...+
T Consensus        63 ~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~~~~~-~~i~~~~~l~~~~~~~~~~~~~  140 (167)
T cd04161          63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKNALLG-ADVIEYLSLEKLVNENKSLCHI  140 (167)
T ss_pred             HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcCCCCH-HHHHHhcCcccccCCCCceEEE
Confidence            7889999999999999877777777777665432 2247899999999999765321 122221     11     1234


Q ss_pred             CccccCcc------CCHHHHHHHHhh
Q 021615          254 DKVTSETE------LSSEDAVKSLST  273 (310)
Q Consensus       254 ~~~sa~~~------~gi~~l~~~l~~  273 (310)
                      ..+||++|      .|+.+.|++|++
T Consensus       141 ~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         141 EPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             EEeEceeCCCCccccCHHHHHHHHhc
Confidence            44899998      899999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PTZ00369 Ras-like protein; Provisional

Probab=99.81  E-value=2.3e-19  Score=153.82  Aligned_cols=159  Identities=18%  Similarity=0.118  Sum_probs=107.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      +||+++|.+|||||||++++.+..... .+..|+.......+..+.    ..  ..+.+|||||+.++..    +   +.
T Consensus         6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~----l---~~   71 (189)
T PTZ00369          6 YKLVVVGGGGVGKSALTIQFIQNHFID-EYDPTIEDSYRKQCVIDE----ET--CLLDILDTAGQEEYSA----M---RD   71 (189)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCc-CcCCchhhEEEEEEEECC----EE--EEEEEEeCCCCccchh----h---HH
Confidence            689999999999999999999865321 121111111111111111    11  1678999999876532    2   23


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~  259 (310)
                      .+++.+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+..... ...........  ..+.++||+
T Consensus        72 ~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak  150 (189)
T PTZ00369         72 QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAK  150 (189)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCC
Confidence            456689999999999999888888888888876532 23689999999999864321 11112222223  345679999


Q ss_pred             ccCCHHHHHHHHhhccC
Q 021615          260 TELSSEDAVKSLSTEGG  276 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~~  276 (310)
                      ++.|+.++|..++....
T Consensus       151 ~~~gi~~~~~~l~~~l~  167 (189)
T PTZ00369        151 QRVNVDEAFYELVREIR  167 (189)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999987653

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.81  E-value=2.4e-19  Score=151.45  Aligned_cols=157  Identities=16%  Similarity=0.124  Sum_probs=106.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeec-cceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP-NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~-~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .+|+++|.+|||||||++++.+.+... .+. .|... ....+..+    +..  ..+.+|||||..++.    .+   +
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~-~~~-~t~~~~~~~~~~~~----~~~--~~l~i~Dt~G~~~~~----~l---~   67 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPD-YHD-PTIEDAYKQQARID----NEP--ALLDILDTAGQAEFT----AM---R   67 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCC-CcC-CcccceEEEEEEEC----CEE--EEEEEEeCCCchhhH----HH---h
Confidence            579999999999999999999765321 111 12211 11112211    111  268999999986652    22   2


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVT  257 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~s  257 (310)
                      ..++..+|++++|+|+++..+++....|...+..... ..+.|+++|+||+|+....    +....+.+.. .+.+.++|
T Consensus        68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~S  145 (172)
T cd04141          68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF-NCPFFETS  145 (172)
T ss_pred             HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh-CCEEEEEe
Confidence            3446689999999999999999988877777765432 1368999999999986432    1222332222 34566799


Q ss_pred             cCccCCHHHHHHHHhhccC
Q 021615          258 SETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~~  276 (310)
                      |+++.|++++|..++....
T Consensus       146 a~~~~~v~~~f~~l~~~~~  164 (172)
T cd04141         146 AALRHYIDDAFHGLVREIR  164 (172)
T ss_pred             cCCCCCHHHHHHHHHHHHH
Confidence            9999999999999976553

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.81  E-value=4.7e-19  Score=149.04  Aligned_cols=160  Identities=18%  Similarity=0.100  Sum_probs=107.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|++|+|||||+++++.........+..+.+.....+....    ..  ..+.+|||||..+...      ..+
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~------~~~   69 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDG----ER--IKVQLWDTAGQERFRK------SMV   69 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECC----eE--EEEEEEeCCChHHHHH------hhH
Confidence            36899999999999999999987653221111111111112222111    11  2689999999864321      112


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVT  257 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~s  257 (310)
                      ..+++.+|++++|+|++++.+++....|..++..+... .+.|+++|+||+|+....+    ....+.+.. .+.+.++|
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~S  147 (170)
T cd04115          70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLREQIQVPTDLAQRFADAH-SMPLFETS  147 (170)
T ss_pred             HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCC-CCCCEEEEEECccchhhcCCCHHHHHHHHHHc-CCcEEEEe
Confidence            33457899999999999999999998898888765422 3689999999999865432    222232222 35577799


Q ss_pred             cCc---cCCHHHHHHHHhhcc
Q 021615          258 SET---ELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~---~~gi~~l~~~l~~~~  275 (310)
                      |++   +.++.++|..|+...
T Consensus       148 a~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         148 AKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             ccCCcCCCCHHHHHHHHHHHh
Confidence            999   999999999987543

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04125 RabA_like RabA-like subfamily

Probab=99.81  E-value=4.4e-19  Score=151.70  Aligned_cols=159  Identities=15%  Similarity=0.037  Sum_probs=107.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      ++|+++|.+|||||||+++|++........+..+.+.....+..+.    ..  ..+.+|||||..+..       ..+.
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~i~Dt~g~~~~~-------~~~~   67 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIEN----KI--IKLQIWDTNGQERFR-------SLNN   67 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC----EE--EEEEEEECCCcHHHH-------hhHH
Confidence            4799999999999999999998764321111111111111222111    11  268899999975442       1334


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~sa~  259 (310)
                      ..++.+|++++|+|++++.++..+..|..++..+..  ...|+++|+||+|+.+.... .+........  +.+.++|++
T Consensus        68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  145 (188)
T cd04125          68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAR--ENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAK  145 (188)
T ss_pred             HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCC
Confidence            556789999999999999999988888888887643  34799999999998743211 1111222222  346679999


Q ss_pred             ccCCHHHHHHHHhhccC
Q 021615          260 TELSSEDAVKSLSTEGG  276 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~~  276 (310)
                      ++.|+.++|..|+....
T Consensus       146 ~~~~i~~~f~~l~~~~~  162 (188)
T cd04125         146 QSINVEEAFILLVKLII  162 (188)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999877653

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01890 LepA LepA subfamily

Probab=99.81  E-value=1.6e-18  Score=146.58  Aligned_cols=156  Identities=21%  Similarity=0.216  Sum_probs=100.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCC---------------CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL  167 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~---------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~  167 (310)
                      .+|+++|.+|+|||||+++|++....+..               ..++|..+....+.+... +..  ...+.+|||||+
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~-~~~--~~~~~l~Dt~G~   77 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK-DGQ--EYLLNLIDTPGH   77 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC-CCC--cEEEEEEECCCC
Confidence            36999999999999999999975422211               112333332222221100 111  126889999999


Q ss_pred             CccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHHHH
Q 021615          168 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLT  245 (310)
Q Consensus       168 ~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~l~  245 (310)
                      .++       ...+..++..+|++++|+|+++....++...+.... .     .++|+++|+||+|+.+..  ...+++.
T Consensus        78 ~~~-------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~  144 (179)
T cd01890          78 VDF-------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E-----NNLEIIPVINKIDLPSADPERVKQQIE  144 (179)
T ss_pred             hhh-------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H-----cCCCEEEEEECCCCCcCCHHHHHHHHH
Confidence            764       223445677899999999999876666655554322 2     368999999999986432  1123333


Q ss_pred             HHHHhcC---CCccccCccCCHHHHHHHHhhcc
Q 021615          246 EEILKIG---CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       246 ~~l~~~g---~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +.+. +.   +..+|++++.|++++++.++...
T Consensus       145 ~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         145 DVLG-LDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             HHhC-CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            3221 22   44699999999999999987653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04134 Rho3 Rho3 subfamily

Probab=99.81  E-value=3.5e-19  Score=152.70  Aligned_cols=158  Identities=17%  Similarity=0.122  Sum_probs=105.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||++++++..... .+..|........+..+    ..  ...+.+|||||..++..    +..   
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~i~~~----~~--~~~l~i~Dt~G~~~~~~----l~~---   66 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQ-VYEPTVFENYVHDIFVD----GL--HIELSLWDTAGQEEFDR----LRS---   66 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCC-ccCCcceeeeEEEEEEC----CE--EEEEEEEECCCChhccc----ccc---
Confidence            479999999999999999999875322 11111111111111111    11  12689999999876532    111   


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-------------HHHHHHH
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEI  248 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~l~~~l  248 (310)
                      .++..+|++++|+|+++..+++... .|..++..+.   .+.|+++|+||+|+....+..             ++..+..
T Consensus        67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  143 (189)
T cd04134          67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA  143 (189)
T ss_pred             ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence            2356899999999999998888775 4777776543   368999999999997643211             1112222


Q ss_pred             Hh---cCCCccccCccCCHHHHHHHHhhccCC
Q 021615          249 LK---IGCDKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       249 ~~---~g~~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      ..   ..+.++||+++.|++++|..++..+..
T Consensus       144 ~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         144 KRINALRYLECSAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             HHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence            22   346679999999999999999876643

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.81  E-value=8.2e-19  Score=178.26  Aligned_cols=162  Identities=22%  Similarity=0.251  Sum_probs=115.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH-
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-  178 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~-  178 (310)
                      ..++|+++|.||||||||+|+|++.+.. ++++++||.++....+..+..        .+.+|||||+.+......+.. 
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--------~~~liDTaG~~~~~~~~~~~e~  520 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--------DWLFIDTAGIKRRQHKLTGAEY  520 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--------EEEEEECCCcccCcccchhHHH
Confidence            3479999999999999999999998864 488999999887666654432        688999999875432211111 


Q ss_pred             -H--HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH----hc
Q 021615          179 -R--NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----KI  251 (310)
Q Consensus       179 -~--~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~----~~  251 (310)
                       .  ....+++.||++++|+|+++..+.++...+ ..+..     .++|+++|+||+|+.+... .+.+.+.+.    ..
T Consensus       521 ~~~~r~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~-----~~~piIiV~NK~DL~~~~~-~~~~~~~~~~~l~~~  593 (712)
T PRK09518        521 YSSLRTQAAIERSELALFLFDASQPISEQDLKVM-SMAVD-----AGRALVLVFNKWDLMDEFR-RQRLERLWKTEFDRV  593 (712)
T ss_pred             HHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCEEEEEEchhcCChhH-HHHHHHHHHHhccCC
Confidence             0  113456889999999999998877776543 44443     3789999999999976432 233333332    22


Q ss_pred             C---CCccccCccCCHHHHHHHHhhccCC
Q 021615          252 G---CDKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       252 g---~~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      .   +..+||+++.|+.+++..+......
T Consensus       594 ~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        594 TWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            2   2458999999999999998776543

>cd01893 Miro1 Miro1 subfamily

Probab=99.80  E-value=8.9e-19  Score=146.77  Aligned_cols=154  Identities=18%  Similarity=0.257  Sum_probs=103.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      ||+++|.+|||||||+++|.+.... ..++.+ ...........    ...  ..+.+|||||..+..       ..+..
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~-~~~~~~~~~~~----~~~--~~~~i~Dt~G~~~~~-------~~~~~   66 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRV-LPEITIPADVT----PER--VPTTIVDTSSRPQDR-------ANLAA   66 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCC-ccCCCc-ccceEeeeeec----CCe--EEEEEEeCCCchhhh-------HHHhh
Confidence            7999999999999999999987532 223322 11111111111    111  268999999986431       13344


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH------HHHHHHHHHhc-CCCc
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR------LQSLTEEILKI-GCDK  255 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~------~~~l~~~l~~~-g~~~  255 (310)
                      .+..+|++++|+|++++.+++... .|...+..+.   .+.|+++|+||+|+.+....      ...+.+.+... .+.+
T Consensus        67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e  143 (166)
T cd01893          67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG---VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVE  143 (166)
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEE
Confidence            567899999999999988888764 5666776543   26899999999999764321      12222333332 5667


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +||+++.|++++|..+....
T Consensus       144 ~Sa~~~~~v~~lf~~~~~~~  163 (166)
T cd01893         144 CSAKTLINVSEVFYYAQKAV  163 (166)
T ss_pred             eccccccCHHHHHHHHHHHh
Confidence            99999999999999876544

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.80  E-value=6.5e-19  Score=150.28  Aligned_cols=159  Identities=16%  Similarity=0.142  Sum_probs=105.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|+|||||+++|.+.... ..+..|+.......+....   ...  ..+.+|||||+.+...       ...
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~---~~~--~~l~i~Dt~G~~~~~~-------~~~   67 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPN---GKI--IELALWDTAGQEEYDR-------LRP   67 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecC---CcE--EEEEEEECCCchhHHH-------HHH
Confidence            37999999999999999999987632 2222222221122222210   111  2689999999865421       222


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-----HHHHHHHHHHhc---CC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTEEILKI---GC  253 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----~~~~l~~~l~~~---g~  253 (310)
                      .+++.+|++++|+|+++..++++.. .|..++..+.   .+.|+++|+||+|+.....     ...+..+.....   .+
T Consensus        68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~  144 (187)
T cd04132          68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC---PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAY  144 (187)
T ss_pred             HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEE
Confidence            3467899999999999988888774 4666665543   3689999999999865320     112222223333   44


Q ss_pred             CccccCccCCHHHHHHHHhhccCC
Q 021615          254 DKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      .++|++++.|+.++|..+...+..
T Consensus       145 ~e~Sa~~~~~v~~~f~~l~~~~~~  168 (187)
T cd04132         145 LECSAKTMENVEEVFDTAIEEALK  168 (187)
T ss_pred             EEccCCCCCCHHHHHHHHHHHHHh
Confidence            679999999999999998776643

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03118 Rab family protein; Provisional

Probab=99.80  E-value=4.7e-19  Score=154.52  Aligned_cols=163  Identities=17%  Similarity=0.122  Sum_probs=106.7

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..++|+++|.+|||||||+++|++..... ..+.++.......+..+.    ..  ..+.+|||||+.++..       .
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~----~~--~~l~l~Dt~G~~~~~~-------~   78 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGG----KR--LKLTIWDTAGQERFRT-------L   78 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCceeEEEEEEEEECC----EE--EEEEEEECCCchhhHH-------H
Confidence            44789999999999999999999875422 111111111111222111    11  1689999999876522       2


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCcc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKV  256 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~  256 (310)
                      ...+++.+|++++|+|+++..+++.+.. |...+..+.. ..+.|+++|+||+|+...... .+.........  .+.++
T Consensus        79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~  157 (211)
T PLN03118         79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYST-NQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLEC  157 (211)
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEE
Confidence            2345678999999999999888887764 4455554432 235799999999999653221 12222222333  35568


Q ss_pred             ccCccCCHHHHHHHHhhccCCc
Q 021615          257 TSETELSSEDAVKSLSTEGGEA  278 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~~~~  278 (310)
                      |++++.|++++|..++......
T Consensus       158 SAk~~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        158 SAKTRENVEQCFEELALKIMEV  179 (211)
T ss_pred             eCCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999998766443

>cd00876 Ras Ras family

Probab=99.80  E-value=1e-18  Score=144.23  Aligned_cols=156  Identities=17%  Similarity=0.158  Sum_probs=109.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      ||+++|++|||||||++++++.. ....+..++.......+....    ..  ..+.+||+||..+..       .....
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~----~~--~~~~l~D~~g~~~~~-------~~~~~   66 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDG----ET--YTLDILDTAGQEEFS-------AMRDL   66 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECC----EE--EEEEEEECCChHHHH-------HHHHH
Confidence            58999999999999999999876 334455555443333333221    01  268999999986531       12334


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccCc
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSET  260 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~~  260 (310)
                      .++.+|++++|+|.+++.++.+...++..+...... ...|+++|+||+|+..... ..+........  ..+..+|+++
T Consensus        67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  145 (160)
T cd00876          67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKD  145 (160)
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCC
Confidence            567899999999999988888887777777654321 3689999999999986321 22333333333  3466799999


Q ss_pred             cCCHHHHHHHHhhc
Q 021615          261 ELSSEDAVKSLSTE  274 (310)
Q Consensus       261 ~~gi~~l~~~l~~~  274 (310)
                      +.|+.++++.+...
T Consensus       146 ~~~i~~l~~~l~~~  159 (160)
T cd00876         146 NINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999998653

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.80  E-value=1.2e-18  Score=144.48  Aligned_cols=151  Identities=25%  Similarity=0.255  Sum_probs=99.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      +|+++|.+|||||||+++|++..... ..  +|.......+....     .  ..+.+|||||+...       ...+..
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~--~t~~~~~~~~~~~~-----~--~~l~i~D~~G~~~~-------~~~~~~   63 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TI--PTVGFNVEMLQLEK-----H--LSLTVWDVGGQEKM-------RTVWKC   63 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-cc--CccCcceEEEEeCC-----c--eEEEEEECCCCHhH-------HHHHHH
Confidence            58999999999999999999876321 11  22221222222111     1  27899999998543       234455


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hc------CCCc
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KI------GCDK  255 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~------g~~~  255 (310)
                      ++..+|++++|+|++++.++.....++.++... ....+.|+++|+||+|+..... .+++...+.  .+      .+.+
T Consensus        64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~  141 (160)
T cd04156          64 YLENTDGLVYVVDSSDEARLDESQKELKHILKN-EHIKGVPVVLLANKQDLPGALT-AEEITRRFKLKKYCSDRDWYVQP  141 (160)
T ss_pred             HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECcccccCcC-HHHHHHHcCCcccCCCCcEEEEe
Confidence            678899999999999877666665555554332 1224789999999999965321 233333321  11      2445


Q ss_pred             cccCccCCHHHHHHHHhh
Q 021615          256 VTSETELSSEDAVKSLST  273 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~  273 (310)
                      +||+++.|++++|+.++.
T Consensus       142 ~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         142 CSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             cccccCCChHHHHHHHhc
Confidence            899999999999998753

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.80  E-value=7.1e-19  Score=150.12  Aligned_cols=155  Identities=15%  Similarity=0.165  Sum_probs=106.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..||+++|.+++|||||++++...... ..+..|........+..+    ...+  .+.+|||+|..++..    +   .
T Consensus         5 ~~KivvvGd~~vGKTsli~~~~~~~f~-~~~~pT~~~~~~~~~~~~----~~~~--~l~iwDtaG~e~~~~----~---~   70 (182)
T cd04172           5 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEID----TQRI--ELSLWDTSGSPYYDN----V---R   70 (182)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCC-CccCCceeeeeEEEEEEC----CEEE--EEEEEECCCchhhHh----h---h
Confidence            357999999999999999999976521 222222211111112211    1112  689999999865522    2   2


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc----------------HhHHHHH
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEA----------------RDRLQSL  244 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~----------------~~~~~~l  244 (310)
                      ..+++.+|++++|+|++++.+++.+ ..|..++..+.+   +.|+++|+||+|+.+.                .+..+.+
T Consensus        71 ~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~  147 (182)
T cd04172          71 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANM  147 (182)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHH
Confidence            2346789999999999999999987 788888887653   6899999999998541                1123333


Q ss_pred             HHHHHhcCCCccccCccCC-HHHHHHHHhh
Q 021615          245 TEEILKIGCDKVTSETELS-SEDAVKSLST  273 (310)
Q Consensus       245 ~~~l~~~g~~~~sa~~~~g-i~~l~~~l~~  273 (310)
                      .+.+....+.++||+++.| +.++|..+..
T Consensus       148 a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~  177 (182)
T cd04172         148 AKQIGAATYIECSALQSENSVRDIFHVATL  177 (182)
T ss_pred             HHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence            3333223466799999998 9999988755

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01875 RhoG RhoG subfamily

Probab=99.80  E-value=3.2e-19  Score=153.30  Aligned_cols=156  Identities=18%  Similarity=0.156  Sum_probs=105.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccc-eEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL-GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~-~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .||+++|.+|||||||++++...... ..+. .|..... ..+..+    ...  ..+.+|||||+.++..    +   .
T Consensus         4 ~ki~~vG~~~vGKTsli~~~~~~~f~-~~~~-~t~~~~~~~~~~~~----~~~--~~l~i~Dt~G~e~~~~----l---~   68 (191)
T cd01875           4 IKCVVVGDGAVGKTCLLICYTTNAFP-KEYI-PTVFDNYSAQTAVD----GRT--VSLNLWDTAGQEEYDR----L---R   68 (191)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCC-cCCC-CceEeeeEEEEEEC----CEE--EEEEEEECCCchhhhh----h---h
Confidence            58999999999999999999976521 1121 2221111 111111    111  2689999999976522    2   2


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----------------HHHHH
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARD----------------RLQSL  244 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----------------~~~~l  244 (310)
                      ..+++.+|++++|+|++++.+++.+. .|..++..+.   .+.|+++|+||+|+.+...                ..+.+
T Consensus        69 ~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~  145 (191)
T cd01875          69 TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGAL  145 (191)
T ss_pred             hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHH
Confidence            23467899999999999999999886 5777776543   3689999999999965421                11122


Q ss_pred             HHHHHhcCCCccccCccCCHHHHHHHHhhccC
Q 021615          245 TEEILKIGCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       245 ~~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      .+.+....+.++||+++.|++++|..++....
T Consensus       146 a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~  177 (191)
T cd01875         146 AKQIHAVKYLECSALNQDGVKEVFAEAVRAVL  177 (191)
T ss_pred             HHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence            22222235667999999999999999987653

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.80  E-value=6.5e-19  Score=149.12  Aligned_cols=154  Identities=18%  Similarity=0.159  Sum_probs=102.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||+.++..... ...+..|........+..+    ...  ..+.+|||||..+...    +.   .
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~----~~~--~~l~i~Dt~G~~~~~~----~~---~   67 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVD----GKP--VNLGLWDTAGQEDYDR----LR---P   67 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCCcceeeeEEEEEEC----CEE--EEEEEEECCCchhhhh----hh---h
Confidence            4799999999999999999997542 1222222211111111111    111  2689999999865522    12   2


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----------------HHHHHH
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARD----------------RLQSLT  245 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----------------~~~~l~  245 (310)
                      .++..+|++++|+|++++.+++... .|...+....   .+.|+++|+||+|+.+...                ....+.
T Consensus        68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  144 (174)
T cd01871          68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA  144 (174)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence            3467899999999999998888874 5767676543   3689999999999964321                111222


Q ss_pred             HHHHhcCCCccccCccCCHHHHHHHHhh
Q 021615          246 EEILKIGCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       246 ~~l~~~g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      +.+....+.++||+++.|++++|+.++.
T Consensus       145 ~~~~~~~~~e~Sa~~~~~i~~~f~~l~~  172 (174)
T cd01871         145 KEIGAVKYLECSALTQKGLKTVFDEAIR  172 (174)
T ss_pred             HHcCCcEEEEecccccCCHHHHHHHHHH
Confidence            2222224567999999999999999865

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04118 Rab24 Rab24 subfamily

Probab=99.80  E-value=6.1e-19  Score=151.27  Aligned_cols=158  Identities=14%  Similarity=0.089  Sum_probs=106.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeecc-ceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~-~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .||+++|.+|+|||||+++|++......++..|..... ...+...    +..  ..+.+|||||..+...    +   .
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----~~~--~~l~i~D~~G~~~~~~----~---~   67 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVG----ERV--VTLGIWDTAGSERYEA----M---S   67 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEEC----CEE--EEEEEEECCCchhhhh----h---h
Confidence            37999999999999999999987654333433322111 1112211    111  1578999999865422    1   2


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-----HHHHHHHHHHhc--CCC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTEEILKI--GCD  254 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----~~~~l~~~l~~~--g~~  254 (310)
                      ..++..+|++++|+|+++..+++....|..++....   .+.|+++|+||+|+.....     ..+++.+.....  .+.
T Consensus        68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~  144 (193)
T cd04118          68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHF  144 (193)
T ss_pred             HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC---CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEE
Confidence            234568999999999999888888777888877643   3689999999999864321     012233323333  345


Q ss_pred             ccccCccCCHHHHHHHHhhccC
Q 021615          255 KVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      ++|++++.|+.++|+.++....
T Consensus       145 ~~Sa~~~~gv~~l~~~i~~~~~  166 (193)
T cd04118         145 ETSSKTGQNVDELFQKVAEDFV  166 (193)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            7899999999999999886553

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.80  E-value=7.8e-19  Score=169.26  Aligned_cols=153  Identities=25%  Similarity=0.318  Sum_probs=112.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~~  180 (310)
                      ++|+++|.+|||||||+|+|++.+.. +.+++++|.+...+.+....        ..+.+|||||+.+... ....+...
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~~~~~~   73 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--------REFILIDTGGIEPDDDGFEKQIREQ   73 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--------cEEEEEECCCCCCcchhHHHHHHHH
Confidence            68999999999999999999998764 47889999887777665443        2799999999976321 11223444


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC---CCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g---~~~~s  257 (310)
                      ...++..+|++++|+|+.++....+. .+.+.+..     .++|+++|+||+|+.+.....    ..+..++   +..+|
T Consensus        74 ~~~~~~~ad~il~vvd~~~~~~~~~~-~~~~~l~~-----~~~piilv~NK~D~~~~~~~~----~~~~~lg~~~~~~iS  143 (435)
T PRK00093         74 AELAIEEADVILFVVDGRAGLTPADE-EIAKILRK-----SNKPVILVVNKVDGPDEEADA----YEFYSLGLGEPYPIS  143 (435)
T ss_pred             HHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCcEEEEEECccCccchhhH----HHHHhcCCCCCEEEE
Confidence            56677899999999999876554443 23345554     268999999999976532222    2223444   44589


Q ss_pred             cCccCCHHHHHHHHhh
Q 021615          258 SETELSSEDAVKSLST  273 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~  273 (310)
                      ++++.|+.++++.+..
T Consensus       144 a~~g~gv~~l~~~I~~  159 (435)
T PRK00093        144 AEHGRGIGDLLDAILE  159 (435)
T ss_pred             eeCCCCHHHHHHHHHh
Confidence            9999999999999876

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.80  E-value=1.9e-19  Score=145.29  Aligned_cols=168  Identities=19%  Similarity=0.126  Sum_probs=120.0

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      ...+||+++|.+|+|||||+-+++.....  +...+|+  +-....+..+.    ..+  ++.||||+|++++..    +
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd--~~~~~tIGvDFkvk~m~vdg----~~~--KlaiWDTAGqErFRt----L   76 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFD--DLHPTTIGVDFKVKVMQVDG----KRL--KLAIWDTAGQERFRT----L   76 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccC--ccCCceeeeeEEEEEEEEcC----ceE--EEEEEeccchHhhhc----c
Confidence            34578999999999999999999976532  2222333  22222222222    122  899999999988743    3


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCC
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCD  254 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~  254 (310)
                      ...   +++.|.++++|+|.+..+++..+..|.+|+..|..+. +.-.++|+||+|...+... .++-.+..++  +-+.
T Consensus        77 TpS---yyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~-diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFi  152 (209)
T KOG0080|consen   77 TPS---YYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNP-DIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFI  152 (209)
T ss_pred             CHh---HhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCc-cHhHhhhcccccchhcccccHHHHHHHHHhhCcEEE
Confidence            334   4568999999999999999999999999999997543 4556789999998743221 1222223333  3366


Q ss_pred             ccccCccCCHHHHHHHHhhccCCcccccc
Q 021615          255 KVTSETELSSEDAVKSLSTEGGEADLLSS  283 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~~~~~~~~~  283 (310)
                      ++||++.+++...|+.|.....+.+.+.+
T Consensus       153 E~SAkt~~~V~~~FeelveKIi~tp~l~~  181 (209)
T KOG0080|consen  153 ECSAKTRENVQCCFEELVEKIIETPSLWE  181 (209)
T ss_pred             EcchhhhccHHHHHHHHHHHHhcCcchhh
Confidence            79999999999999999998877766543

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.80  E-value=1.9e-19  Score=148.52  Aligned_cols=160  Identities=18%  Similarity=0.225  Sum_probs=117.6

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-----CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG  174 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-----~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~  174 (310)
                      +.+.||.++|.+|+|||||+|+++..+...     -..-|-|.+.   .++  .    ..  ..++||||+|++++.+  
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev---~Vd--~----~~--vtlQiWDTAGQERFqs--   73 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEV---QVD--D----RS--VTLQIWDTAGQERFQS--   73 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEE---EEc--C----eE--EEEEEEecccHHHhhh--
Confidence            456789999999999999999998765211     1122333321   111  1    11  2689999999998844  


Q ss_pred             chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC-C-CCCCCEEEEEeCCCCCCc------HhHHHHHHH
Q 021615          175 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-D-YLERPFIVVLNKIDLPEA------RDRLQSLTE  246 (310)
Q Consensus       175 ~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~-~-~~~~p~ivv~NK~Dl~~~------~~~~~~l~~  246 (310)
                        ++-.|+   +.+|++++|+|..++.+++.++.|++|+..+.. . ...-|+|+++||+|+.+.      ......+..
T Consensus        74 --Lg~aFY---RgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~  148 (210)
T KOG0394|consen   74 --LGVAFY---RGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK  148 (210)
T ss_pred             --ccccee---cCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH
Confidence              344554   489999999999999999999999999876642 2 235799999999999763      223445555


Q ss_pred             HHHhcCCCccccCccCCHHHHHHHHhhccCC
Q 021615          247 EILKIGCDKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       247 ~l~~~g~~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      .-..+.+.++|||...++.++|...+..+..
T Consensus       149 s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~  179 (210)
T KOG0394|consen  149 SKGNIPYFETSAKEATNVDEAFEEIARRALA  179 (210)
T ss_pred             hcCCceeEEecccccccHHHHHHHHHHHHHh
Confidence            5556778889999999999999998776644

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.80  E-value=6.7e-19  Score=150.18  Aligned_cols=159  Identities=16%  Similarity=0.172  Sum_probs=103.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||++++...... ...|..+.......+...   +..  ...+.+|||||+.+.       ...+.
T Consensus         4 ~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~---~~~--~~~l~l~Dt~G~~~~-------~~~~~   70 (183)
T cd04152           4 LHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLG---NSK--GITFHFWDVGGQEKL-------RPLWK   70 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeecc---CCC--ceEEEEEECCCcHhH-------HHHHH
Confidence            57999999999999999999876532 222222111111112110   001  127899999998543       22334


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hc------CCC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KI------GCD  254 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~------g~~  254 (310)
                      .+++.||++++|+|+++..+++....+..++..+.. ..++|+++|+||+|+..... .+.+...+.  ..      .+.
T Consensus        71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  148 (183)
T cd04152          71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNALS-VSEVEKLLALHELSASTPWHVQ  148 (183)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccCC-HHHHHHHhCccccCCCCceEEE
Confidence            456789999999999987777777666666655432 23689999999999874311 122222221  11      244


Q ss_pred             ccccCccCCHHHHHHHHhhccC
Q 021615          255 KVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      ++||+++.|+++++..+.....
T Consensus       149 ~~SA~~~~gi~~l~~~l~~~l~  170 (183)
T cd04152         149 PACAIIGEGLQEGLEKLYEMIL  170 (183)
T ss_pred             EeecccCCCHHHHHHHHHHHHH
Confidence            6899999999999999876663

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.80  E-value=1.7e-18  Score=143.62  Aligned_cols=158  Identities=19%  Similarity=0.137  Sum_probs=104.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      +||+++|++|||||||+++++..... ..+..++..........+    ...  ..+.+|||||+.+..    .+.   .
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~----~~~--~~~~i~D~~g~~~~~----~~~---~   66 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLD----GED--VQLNILDTAGQEDYA----AIR---D   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEEC----CEE--EEEEEEECCChhhhh----HHH---H
Confidence            47999999999999999999976532 233333322211111111    111  268999999986542    222   2


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-hHHHHHHHHHHh--cCCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~l~~~l~~--~g~~~~sa~  259 (310)
                      ..++.+|++++|+|.+++.++.....+...+..... ..+.|+++|+||+|+.... ............  ..+.++|++
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  145 (164)
T cd04139          67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAK  145 (164)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCC
Confidence            345688999999999988777777777666665422 2479999999999997621 112222222333  345669999


Q ss_pred             ccCCHHHHHHHHhhcc
Q 021615          260 TELSSEDAVKSLSTEG  275 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~  275 (310)
                      ++.|++++|..++...
T Consensus       146 ~~~gi~~l~~~l~~~~  161 (164)
T cd04139         146 TRQNVEKAFYDLVREI  161 (164)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999987544

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04177 RSR1 RSR1 subgroup

Probab=99.80  E-value=1e-18  Score=146.63  Aligned_cols=158  Identities=16%  Similarity=0.193  Sum_probs=105.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      ++|+++|.+|||||||++++.+... ...+..|+.......+....    .  ...+.+|||||+.++..    +.+   
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~~----~~~---   67 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVF-IESYDPTIEDSYRKQVEIDG----R--QCDLEILDTAGTEQFTA----MRE---   67 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECC----E--EEEEEEEeCCCcccchh----hhH---
Confidence            4799999999999999999997653 22222222211111122111    1  12689999999876532    222   


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~sa  258 (310)
                      ..++.++++++|+|.+++.+++....|...+.... ...+.|+++++||+|+.....    ....+.+.+....+.++||
T Consensus        68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  146 (168)
T cd04177          68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIK-DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSA  146 (168)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeC
Confidence            33457999999999999888888888877776532 124789999999999975422    1122222222234667999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|+.++|..++...
T Consensus       147 ~~~~~i~~~f~~i~~~~  163 (168)
T cd04177         147 RKRTNVDEVFIDLVRQI  163 (168)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999987643

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.79  E-value=8.4e-19  Score=168.70  Aligned_cols=154  Identities=25%  Similarity=0.297  Sum_probs=114.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF  181 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~~~  181 (310)
                      +|++||.||||||||+|+|++....+ .+++++|.+.....+....        ..+.+|||||+..... ....+....
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--------~~~~liDTpG~~~~~~~~~~~~~~~~   72 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--------REFILIDTGGIEEDDDGLDKQIREQA   72 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--------eEEEEEECCCCCCcchhHHHHHHHHH
Confidence            58999999999999999999987654 8899999887777665443        2799999999854321 123344555


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC---Ccccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---DKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~---~~~sa  258 (310)
                      ..+++.+|++++|+|+.++....+. .+.+.++.     .++|+++|+||+|+.......    ..+..+++   ..+||
T Consensus        73 ~~~~~~ad~vl~vvD~~~~~~~~d~-~i~~~l~~-----~~~piilVvNK~D~~~~~~~~----~~~~~lg~~~~~~vSa  142 (429)
T TIGR03594        73 EIAIEEADVILFVVDGREGLTPEDE-EIAKWLRK-----SGKPVILVANKIDGKKEDAVA----AEFYSLGFGEPIPISA  142 (429)
T ss_pred             HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----hCCCEEEEEECccCCcccccH----HHHHhcCCCCeEEEeC
Confidence            6678899999999999886555543 34555655     368999999999987643322    22345555   45899


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|+.++++.+....
T Consensus       143 ~~g~gv~~ll~~i~~~l  159 (429)
T TIGR03594       143 EHGRGIGDLLDAILELL  159 (429)
T ss_pred             CcCCChHHHHHHHHHhc
Confidence            99999999999987655

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.79  E-value=7.7e-19  Score=156.85  Aligned_cols=159  Identities=11%  Similarity=0.124  Sum_probs=109.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||++++++.... ..+..|+.+.....+...    ...+  .+.||||+|..++..    +   ..
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~-~~y~pTi~d~~~k~~~i~----~~~~--~l~I~Dt~G~~~~~~----~---~~   66 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFE-EQYTPTIEDFHRKLYSIR----GEVY--QLDILDTSGNHPFPA----M---RR   66 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCChhHhEEEEEEEC----CEEE--EEEEEECCCChhhhH----H---HH
Confidence            37999999999999999999876532 233333322222222221    1112  688999999865421    1   12


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC-------CCCCCCEEEEEeCCCCCCc-HhHHHHHHHHHHh---c
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-------DYLERPFIVVLNKIDLPEA-RDRLQSLTEEILK---I  251 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~-------~~~~~p~ivv~NK~Dl~~~-~~~~~~l~~~l~~---~  251 (310)
                      .++..+|++++|+|+++..+++.+..|.+++.....       ...+.|+++|+||+|+... ....+++.+.+..   .
T Consensus        67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~  146 (247)
T cd04143          67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENC  146 (247)
T ss_pred             HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCC
Confidence            235689999999999999999988888888865421       2246899999999999742 1223444444432   3


Q ss_pred             CCCccccCccCCHHHHHHHHhhcc
Q 021615          252 GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       252 g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .+.++||+++.|++++|..+...+
T Consensus       147 ~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         147 AYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHh
Confidence            467799999999999999987754

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.79  E-value=7.7e-19  Score=147.79  Aligned_cols=154  Identities=18%  Similarity=0.190  Sum_probs=103.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHH
Q 021615          105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH  184 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~  184 (310)
                      |+++|.+|||||||++++.+..... .+..+........+..+    ...  ..+.+|||||+.+....    .   ...
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~--~~~~i~Dt~G~~~~~~~----~---~~~   66 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPE-DYVPTVFENYSADVEVD----GKP--VELGLWDTAGQEDYDRL----R---PLS   66 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCC-CCCCcEEeeeeEEEEEC----CEE--EEEEEEECCCCcccchh----c---hhh
Confidence            5799999999999999999875322 22222221111122211    111  16899999998765321    1   234


Q ss_pred             hhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH----------------HHHHHHH
Q 021615          185 LRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----------------LQSLTEE  247 (310)
Q Consensus       185 l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~----------------~~~l~~~  247 (310)
                      +..+|++++|+|+++..+++.+. .|...+..+.   .+.|+++|+||+|+......                ...+.+.
T Consensus        67 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  143 (174)
T smart00174       67 YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR  143 (174)
T ss_pred             cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence            56899999999999988888774 4777776653   37899999999999753221                1122222


Q ss_pred             HHhcCCCccccCccCCHHHHHHHHhhcc
Q 021615          248 ILKIGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       248 l~~~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +....+.++|++++.|++++|..+...+
T Consensus       144 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      144 IGAVKYLECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             cCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            2222456799999999999999987654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04128 Spg1 Spg1p

Probab=99.79  E-value=1.6e-18  Score=147.94  Aligned_cols=156  Identities=17%  Similarity=0.162  Sum_probs=104.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeecc--ceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN--LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~--~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .||+++|.+|||||||++++.+..... .+. .|....  ...+..+.    ..  ..+.+|||+|..++..       .
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~-~T~g~~~~~~~i~~~~----~~--~~l~iwDt~G~~~~~~-------~   65 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDE-DYI-QTLGVNFMEKTISIRG----TE--ITFSIWDLGGQREFIN-------M   65 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC-CCC-CccceEEEEEEEEECC----EE--EEEEEEeCCCchhHHH-------h
Confidence            379999999999999999998765322 222 222111  11222211    11  2689999999865421       2


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc---Hh---HHHHHHHHHHhc--C
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA---RD---RLQSLTEEILKI--G  252 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~---~~---~~~~l~~~l~~~--g  252 (310)
                      +..+++.+|++++|+|++++.+++++..|..++..+.+  ...| ++|+||+|+...   .+   ..+...+.....  .
T Consensus        66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~  142 (182)
T cd04128          66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAP  142 (182)
T ss_pred             hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCE
Confidence            23456789999999999999999998888888876543  2356 678999999531   11   112222222233  3


Q ss_pred             CCccccCccCCHHHHHHHHhhccC
Q 021615          253 CDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      +.++||+++.|++++|..++..+.
T Consensus       143 ~~e~SAk~g~~v~~lf~~l~~~l~  166 (182)
T cd04128         143 LIFCSTSHSINVQKIFKIVLAKAF  166 (182)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            566999999999999999877663

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04163 Era Era subfamily

Probab=99.79  E-value=2.7e-18  Score=141.90  Aligned_cols=157  Identities=27%  Similarity=0.358  Sum_probs=107.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC-CchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~-~~~l~~~  180 (310)
                      .+|+++|.+|+|||||+|+|++..... .+.+.+|............        ..+.+|||||+.+.... ...+...
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~liDtpG~~~~~~~~~~~~~~~   75 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDD--------AQIIFVDTPGIHKPKKKLGERMVKA   75 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCC--------eEEEEEECCCCCcchHHHHHHHHHH
Confidence            569999999999999999999887543 4555566544444433221        26899999998765322 1122333


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc----CCCcc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI----GCDKV  256 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~----g~~~~  256 (310)
                      ....+..+|++++|+|++++.... ...+...+..+     +.|+++|+||+|+....+....+.+.+...    .+..+
T Consensus        76 ~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~-----~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (168)
T cd04163          76 AWSALKDVDLVLFVVDASEPIGEG-DEFILELLKKS-----KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPI  149 (168)
T ss_pred             HHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHh-----CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEE
Confidence            455678899999999999763222 23344455442     689999999999985444444444444432    34558


Q ss_pred             ccCccCCHHHHHHHHhh
Q 021615          257 TSETELSSEDAVKSLST  273 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~  273 (310)
                      |++.+.|++++++.+..
T Consensus       150 s~~~~~~~~~l~~~l~~  166 (168)
T cd04163         150 SALKGENVDELLEEIVK  166 (168)
T ss_pred             EeccCCChHHHHHHHHh
Confidence            99999999999998854

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.79  E-value=1.1e-18  Score=148.81  Aligned_cols=154  Identities=21%  Similarity=0.188  Sum_probs=101.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|++|||||||++++...... . + .+|.......+....        ..+.+|||||+.+.       ...+
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-~-~-~~T~~~~~~~~~~~~--------~~~~l~D~~G~~~~-------~~~~   78 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVV-T-T-IPTIGFNVETVEYKN--------LKFTMWDVGGQDKL-------RPLW   78 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-c-c-CCccccceEEEEECC--------EEEEEEECCCCHhH-------HHHH
Confidence            468999999999999999999754321 1 1 123333333333221        27899999998543       2233


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-------CCC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GCD  254 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-------g~~  254 (310)
                      ..+++.+|++|+|+|+++..++.+...++..+... ....+.|+++|+||+|+.+... .+++.+.+...       .+.
T Consensus        79 ~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~  156 (182)
T PTZ00133         79 RHYYQNTNGLIFVVDSNDRERIGDAREELERMLSE-DELRDAVLLVFANKQDLPNAMS-TTEVTEKLGLHSVRQRNWYIQ  156 (182)
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhC-HhhcCCCEEEEEeCCCCCCCCC-HHHHHHHhCCCcccCCcEEEE
Confidence            45578999999999999877666655444443221 1224689999999999875322 22333333211       123


Q ss_pred             ccccCccCCHHHHHHHHhhcc
Q 021615          255 KVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ++||+++.|+.++|..++...
T Consensus       157 ~~Sa~tg~gv~e~~~~l~~~i  177 (182)
T PTZ00133        157 GCCATTAQGLYEGLDWLSANI  177 (182)
T ss_pred             eeeCCCCCCHHHHHHHHHHHH
Confidence            579999999999999987644

>PLN03108 Rab family protein; Provisional

Probab=99.79  E-value=1.5e-18  Score=151.33  Aligned_cols=161  Identities=15%  Similarity=0.046  Sum_probs=108.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...||+|+|.+|+|||||+++|++.+......+....+.....+....    ..  ..+.+|||||.....       ..
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~----~~--i~l~l~Dt~G~~~~~-------~~   71 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN----KP--IKLQIWDTAGQESFR-------SI   71 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECC----EE--EEEEEEeCCCcHHHH-------HH
Confidence            347899999999999999999998754332222211111122222211    11  168899999986442       22


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~s  257 (310)
                      ...++..+|++++|+|+++..+++.+..|...+..+..  ...|+++|+||+|+..... ..++..+....  +.+.++|
T Consensus        72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  149 (210)
T PLN03108         72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS  149 (210)
T ss_pred             HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEe
Confidence            34556789999999999998888888778777765432  3689999999999965321 12222223333  3456689


Q ss_pred             cCccCCHHHHHHHHhhccC
Q 021615          258 SETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~~  276 (310)
                      ++++.|+.++|..++....
T Consensus       150 a~~~~~v~e~f~~l~~~~~  168 (210)
T PLN03108        150 AKTAQNVEEAFIKTAAKIY  168 (210)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999877653

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.79  E-value=1.1e-18  Score=145.43  Aligned_cols=150  Identities=16%  Similarity=0.146  Sum_probs=103.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      +|+++|.+|||||||++++....... .++ ++.......+..+.    ..  ..+.+|||+|....            .
T Consensus         2 ki~vvG~~gvGKTsli~~~~~~~f~~-~~~-~~~~~~~~~i~~~~----~~--~~l~i~D~~g~~~~------------~   61 (158)
T cd04103           2 KLGIVGNLQSGKSALVHRYLTGSYVQ-LES-PEGGRFKKEVLVDG----QS--HLLLIRDEGGAPDA------------Q   61 (158)
T ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCC-CCC-CCccceEEEEEECC----EE--EEEEEEECCCCCch------------h
Confidence            79999999999999999987654211 111 11111111222221    11  26899999998531            2


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC--cHh----HHHHHHHHHHhcCCCccc
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE--ARD----RLQSLTEEILKIGCDKVT  257 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~--~~~----~~~~l~~~l~~~g~~~~s  257 (310)
                      +++.+|++++|+|.++..+++....|+.++..+.. ..+.|+++|+||+|+..  ..+    ..+.+.+....+.+.++|
T Consensus        62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  140 (158)
T cd04103          62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETC  140 (158)
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEe
Confidence            34579999999999999999998889888877642 23589999999999852  111    122333333345677899


Q ss_pred             cCccCCHHHHHHHHhhc
Q 021615          258 SETELSSEDAVKSLSTE  274 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~  274 (310)
                      |+++.|++++|..++..
T Consensus       141 Ak~~~~i~~~f~~~~~~  157 (158)
T cd04103         141 ATYGLNVERVFQEAAQK  157 (158)
T ss_pred             cCCCCCHHHHHHHHHhh
Confidence            99999999999998643

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.79  E-value=1.9e-18  Score=146.82  Aligned_cols=147  Identities=22%  Similarity=0.257  Sum_probs=100.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC----
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----  174 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~--~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~----  174 (310)
                      ..++|+++|.+|+|||||+|+|++..  ..+++.+++|.......++           ..+.+|||||+.......    
T Consensus        17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~liDtpG~~~~~~~~~~~~   85 (179)
T TIGR03598        17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-----------DGFRLVDLPGYGYAKVSKEEKE   85 (179)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-----------CcEEEEeCCCCccccCChhHHH
Confidence            45789999999999999999999875  3346777788765443321           168999999986432111    


Q ss_pred             --chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHH
Q 021615          175 --KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEIL  249 (310)
Q Consensus       175 --~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~  249 (310)
                        ..+...+++....++++++|+|++++....+.. +...+..     .++|+++|+||+|+....+   ..+++.+.+.
T Consensus        86 ~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~-----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~  159 (179)
T TIGR03598        86 KWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE-----RGIPVLIVLTKADKLKKSELNKQLKKIKKALK  159 (179)
T ss_pred             HHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHh
Confidence              111223344444578999999998765555543 3345543     3689999999999976432   3455555665


Q ss_pred             hc----CCCccccCccCCH
Q 021615          250 KI----GCDKVTSETELSS  264 (310)
Q Consensus       250 ~~----g~~~~sa~~~~gi  264 (310)
                      ..    .+..+||++++|+
T Consensus       160 ~~~~~~~v~~~Sa~~g~gi  178 (179)
T TIGR03598       160 KDADDPSVQLFSSLKKTGI  178 (179)
T ss_pred             hccCCCceEEEECCCCCCC
Confidence            53    4666999999986

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.79  E-value=2.3e-18  Score=148.75  Aligned_cols=158  Identities=15%  Similarity=0.140  Sum_probs=107.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      ||+++|.+|||||||++++++.... ..+..|+.......+....    .  ...+.+|||||+.++..    +   ...
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~----~--~~~l~i~D~~G~~~~~~----~---~~~   66 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGG----V--SLTLDILDTSGSYSFPA----M---RKL   66 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECC----E--EEEEEEEECCCchhhhH----H---HHH
Confidence            5899999999999999999987532 2233333222222222211    1  12689999999865421    1   223


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--HHHHHHHHHH-h--cCCCcccc
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEIL-K--IGCDKVTS  258 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~l~~~l~-~--~g~~~~sa  258 (310)
                      ++..+|++++|+|+++..+++....|...+..+... .+.|+++|+||+|+.....  ..+...+... .  ..+..+|+
T Consensus        67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  145 (198)
T cd04147          67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSA  145 (198)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecC
Confidence            467899999999999988888888888777765432 3689999999999965311  1111122221 2  34567999


Q ss_pred             CccCCHHHHHHHHhhccC
Q 021615          259 ETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~~  276 (310)
                      +++.|+.++|+.+...+.
T Consensus       146 ~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         146 KDNENVLEVFKELLRQAN  163 (198)
T ss_pred             CCCCCHHHHHHHHHHHhh
Confidence            999999999999987654

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.79  E-value=6.9e-19  Score=138.87  Aligned_cols=113  Identities=34%  Similarity=0.555  Sum_probs=85.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc--hHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--GLGRN  180 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~--~l~~~  180 (310)
                      +|+++|.+|||||||+|+|++.+. .+++.+++|..+..+.+....        ..+.++||||+.+......  .....
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--------~~~~~vDtpG~~~~~~~~~~~~~~~~   72 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--------KKFILVDTPGINDGESQDNDGKEIRK   72 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--------EEEEEEESSSCSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--------eeEEEEeCCCCcccchhhHHHHHHHH
Confidence            589999999999999999998754 458899999988665555432        2689999999987643322  13445


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK  231 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK  231 (310)
                      +++.+..+|+++||+|++. ...++...+.++|+      .++|+++|+||
T Consensus        73 ~~~~~~~~d~ii~vv~~~~-~~~~~~~~~~~~l~------~~~~~i~v~NK  116 (116)
T PF01926_consen   73 FLEQISKSDLIIYVVDASN-PITEDDKNILRELK------NKKPIILVLNK  116 (116)
T ss_dssp             HHHHHCTESEEEEEEETTS-HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred             HHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence            7788899999999999776 22344556666674      37999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01900 YchF YchF subfamily

Probab=99.79  E-value=5e-19  Score=159.40  Aligned_cols=114  Identities=37%  Similarity=0.665  Sum_probs=94.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC--------C-CccCCCceEEEeCCCCCccccCCc
Q 021615          105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--------G-AEKYSSEATLADLPGLIEGAHLGK  175 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~--------~-~~~~~~~~~i~DtPG~~~~~~~~~  175 (310)
                      |++||.||||||||+|+|++.+..+++|||||++|+.+.+......        . .......+.++||||+.++++.+.
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5899999999999999999999988999999999999998754310        0 000112489999999999998889


Q ss_pred             hHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHHHhcCC
Q 021615          176 GLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNP  218 (310)
Q Consensus       176 ~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l~~~~~  218 (310)
                      +++..|+.++++||++++|+|+..          .++..+++.+..||..++.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~  133 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADL  133 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhH
Confidence            999999999999999999999853          2688888888888887754

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.79  E-value=1.3e-18  Score=150.02  Aligned_cols=155  Identities=17%  Similarity=0.153  Sum_probs=100.5

Q ss_pred             CeEEEEcCCCCcHHHHHH-HHHcCCCC----CCCCCCceeec-cceEeeC------CCCCCCccCCCceEEEeCCCCCcc
Q 021615          103 ADVGLVGLPNAGKSTLLA-AITHAKPD----IADYPFTTLMP-NLGRLDG------DPTLGAEKYSSEATLADLPGLIEG  170 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln-~L~~~~~~----i~~~~~tT~~~-~~~~v~~------~~~~~~~~~~~~~~i~DtPG~~~~  170 (310)
                      .||+++|.+|||||||+. ++.+....    ...+.. |... .......      ....++..+  .+.+|||+|+.+.
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~p-Ti~~~~~~~~~~~~~~~~~~~~~~~~v--~l~iwDTaG~~~~   79 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVP-TVWAIDQYRVCQEVLERSRDVVDGVSV--SLRLWDTFGDHDK   79 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCC-ceecccceeEEeeeccccceeeCCEEE--EEEEEeCCCChhh
Confidence            589999999999999996 56544321    112211 2210 0000000      001112222  7899999998642


Q ss_pred             ccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCc------------
Q 021615          171 AHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEA------------  237 (310)
Q Consensus       171 ~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------------  237 (310)
                            +.   ..+++.||++++|+|.+++.+++... .|..++..+.   .+.|+++|+||+|+...            
T Consensus        80 ------~~---~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~~~~  147 (195)
T cd01873          80 ------DR---RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRYADLDEVNRARRPL  147 (195)
T ss_pred             ------hh---cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccccccchhhhccccc
Confidence                  11   12467899999999999999998886 5878887654   36899999999998631            


Q ss_pred             -----------HhHHHHHHHHHHhcCCCccccCccCCHHHHHHHHhh
Q 021615          238 -----------RDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       238 -----------~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                                 .+..+.+.+.+. +.+.++||+++.|++++|..++.
T Consensus       148 ~~~~~~~~~V~~~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~  193 (195)
T cd01873         148 ARPIKNADILPPETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIR  193 (195)
T ss_pred             ccccccCCccCHHHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHH
Confidence                       112233333222 35677999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04155 Arl3 Arl3 subfamily

Probab=99.79  E-value=1.8e-18  Score=145.36  Aligned_cols=152  Identities=20%  Similarity=0.198  Sum_probs=100.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .++|+++|++|||||||+++|++.....   ...|...+...+....        ..+.+|||||..+.       ...+
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~~~--------~~~~~~D~~G~~~~-------~~~~   75 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQSDG--------FKLNVWDIGGQRAI-------RPYW   75 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECC--------EEEEEEECCCCHHH-------HHHH
Confidence            4679999999999999999999875321   1112211122333221        26899999997432       2344


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-------CCC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GCD  254 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-------g~~  254 (310)
                      ..+++.||++++|+|+++...+.....+...+.... ...+.|+++++||+|+....+ .+++.+.+.-.       .+.
T Consensus        76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~-~~~i~~~l~~~~~~~~~~~~~  153 (173)
T cd04155          76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATAAP-AEEIAEALNLHDLRDRTWHIQ  153 (173)
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccCCC-HHHHHHHcCCcccCCCeEEEE
Confidence            556788999999999998666655544444433221 123689999999999976432 33444433211       134


Q ss_pred             ccccCccCCHHHHHHHHhh
Q 021615          255 KVTSETELSSEDAVKSLST  273 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~  273 (310)
                      ++||+++.|++++|+++++
T Consensus       154 ~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         154 ACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EeECCCCCCHHHHHHHHhc
Confidence            6899999999999999864

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04135 Tc10 TC10 subfamily

Probab=99.79  E-value=1.7e-18  Score=145.64  Aligned_cols=155  Identities=16%  Similarity=0.166  Sum_probs=103.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|++|+|||||++++.+.+.. ..+..+........+...    ...+  .+.+|||||..+....    .   .
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~----~~~~--~~~i~Dt~G~~~~~~~----~---~   66 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVG----GKQY--LLGLYDTAGQEDYDRL----R---P   66 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEC----CEEE--EEEEEeCCCccccccc----c---c
Confidence            37999999999999999999977532 222222222211122221    1112  5789999998765321    1   1


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------------HHHHHHHH
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------------LQSLTEEI  248 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~l~~~l  248 (310)
                      ..+..+|++++|+|..++.+++... .|...+..+.   .+.|+++|+||+|+.+....             .++.....
T Consensus        67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  143 (174)
T cd04135          67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLA  143 (174)
T ss_pred             ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence            2356899999999999988887774 5666676542   47899999999998653211             11222223


Q ss_pred             HhcC---CCccccCccCCHHHHHHHHhhc
Q 021615          249 LKIG---CDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       249 ~~~g---~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                      ...+   +.++||+++.|++++|+.++..
T Consensus       144 ~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~  172 (174)
T cd04135         144 KEIGAHCYVECSALTQKGLKTVFDEAILA  172 (174)
T ss_pred             HHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence            3343   5579999999999999988654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04148 RGK RGK subfamily

Probab=99.78  E-value=1.7e-18  Score=152.22  Aligned_cols=156  Identities=18%  Similarity=0.170  Sum_probs=103.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .+|+++|.+|||||||++++++.......++ +|.  +.....+..+.    .  ...+.+|||||+...      +.. 
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~-~t~~~~~~~~~i~~~~----~--~~~l~i~Dt~G~~~~------~~~-   66 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYD-ASGDDDTYERTVSVDG----E--ESTLVVIDHWEQEMW------TED-   66 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcC-CCccccceEEEEEECC----E--EEEEEEEeCCCcchH------HHh-
Confidence            4799999999999999999986653311221 111  11111222211    1  126899999998611      111 


Q ss_pred             HHHHhh-hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHH--hcCCCcc
Q 021615          181 FLRHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDKV  256 (310)
Q Consensus       181 ~~~~l~-~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~--~~g~~~~  256 (310)
                        .++. .+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+...... .++..+...  ...+.++
T Consensus        67 --~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~  143 (221)
T cd04148          67 --SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIET  143 (221)
T ss_pred             --HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEe
Confidence              1234 79999999999998888888888888876532 236899999999998654321 111112222  2345679


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|+.++|+.++...
T Consensus       144 SA~~~~gv~~l~~~l~~~~  162 (221)
T cd04148         144 SAGLQHNVDELLEGIVRQI  162 (221)
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            9999999999999987655

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=5.2e-19  Score=149.21  Aligned_cols=161  Identities=17%  Similarity=0.095  Sum_probs=117.3

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      +...++||+++|.+++|||-|+.+++..+......+..-.+.....+..+.    ..  .+.+||||+|+.++.    .+
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~----k~--vkaqIWDTAGQERyr----Ai   79 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG----KT--VKAQIWDTAGQERYR----AI   79 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC----cE--EEEeeecccchhhhc----cc
Confidence            567789999999999999999999998875543322222222222222211    11  178999999998762    23


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH---hcCCC
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCD  254 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~---~~g~~  254 (310)
                      ..   .+.+.|-+.++|+|++...+++....|+.||+.+..  .+.++++|+||+||........+-...+.   .+.+.
T Consensus        80 tS---aYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad--~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~  154 (222)
T KOG0087|consen   80 TS---AYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFL  154 (222)
T ss_pred             cc---hhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC--CCeEEEEeecchhhhhccccchhhhHhHHHhcCceEE
Confidence            33   345689999999999999999999999999998865  47899999999999874333333333333   36788


Q ss_pred             ccccCccCCHHHHHHHHhh
Q 021615          255 KVTSETELSSEDAVKSLST  273 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~  273 (310)
                      ++||....+++.+|..+..
T Consensus       155 EtSAl~~tNVe~aF~~~l~  173 (222)
T KOG0087|consen  155 ETSALDATNVEKAFERVLT  173 (222)
T ss_pred             EecccccccHHHHHHHHHH
Confidence            8999999999999977654

>cd01889 SelB_euk SelB subfamily

Probab=99.78  E-value=5.1e-18  Score=145.80  Aligned_cols=160  Identities=21%  Similarity=0.240  Sum_probs=103.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCC-------CCCCCCCCceeeccceEeeCCCCCC------CccCCCceEEEeCCCCCc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAK-------PDIADYPFTTLMPNLGRLDGDPTLG------AEKYSSEATLADLPGLIE  169 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~-------~~i~~~~~tT~~~~~~~v~~~~~~~------~~~~~~~~~i~DtPG~~~  169 (310)
                      .+|+++|.+|+|||||+++|++..       ......+++|.......+.......      ...-...+.+|||||+. 
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-   79 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-   79 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence            369999999999999999999731       1112344567665544443321000      00002378999999983 


Q ss_pred             cccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHH
Q 021615          170 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTE  246 (310)
Q Consensus       170 ~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~  246 (310)
                            .+.+.+...+..+|++++|+|+++....+..+.+. ....     .+.|+++|+||+|+....+   ..+++.+
T Consensus        80 ------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~  147 (192)
T cd01889          80 ------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI-----LCKKLIVVLNKIDLIPEEERERKIEKMKK  147 (192)
T ss_pred             ------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence                  23445556667899999999998755444433332 2222     2579999999999975322   2333333


Q ss_pred             HHH---------hcCCCccccCccCCHHHHHHHHhhcc
Q 021615          247 EIL---------KIGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       247 ~l~---------~~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .+.         ...+..+|++++.|++++++.|....
T Consensus       148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~  185 (192)
T cd01889         148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI  185 (192)
T ss_pred             HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence            322         12345699999999999999986654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=3.7e-18  Score=142.31  Aligned_cols=161  Identities=16%  Similarity=0.112  Sum_probs=112.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ..||+++|..+|||||||+++......- +| ..|+  +-...++.+.    +..+  ++++|||+|++++..    +. 
T Consensus        22 ~~KlVflGdqsVGKTslItRf~yd~fd~-~Y-qATIGiDFlskt~~l~----d~~v--rLQlWDTAGQERFrs----li-   88 (221)
T KOG0094|consen   22 KYKLVFLGDQSVGKTSLITRFMYDKFDN-TY-QATIGIDFLSKTMYLE----DRTV--RLQLWDTAGQERFRS----LI-   88 (221)
T ss_pred             EEEEEEEccCccchHHHHHHHHHhhhcc-cc-cceeeeEEEEEEEEEc----CcEE--EEEEEecccHHHHhh----hh-
Confidence            3899999999999999999998764211 11 1121  1111112211    1222  899999999988733    33 


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-HHHHHHHHhcC--CCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKIG--CDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~l~~~l~~~g--~~~~  256 (310)
                        -.+++.+.++|.|+|+++..++++...|.+.+....... +.-+++|+||.||.+..+.. ++-....++++  +.++
T Consensus        89 --psY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~et  165 (221)
T KOG0094|consen   89 --PSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-DVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIET  165 (221)
T ss_pred             --hhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-ceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEe
Confidence              356679999999999999999999999999998765311 35678899999999864422 12222333443  5568


Q ss_pred             ccCccCCHHHHHHHHhhccCCc
Q 021615          257 TSETELSSEDAVKSLSTEGGEA  278 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~~~~  278 (310)
                      |++.|.++..+|..+++.+-..
T Consensus       166 sak~g~NVk~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  166 SAKAGENVKQLFRRIAAALPGM  187 (221)
T ss_pred             cccCCCCHHHHHHHHHHhccCc
Confidence            9999999999999988766544

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.78  E-value=4e-18  Score=149.71  Aligned_cols=156  Identities=13%  Similarity=0.162  Sum_probs=103.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||++||.+|||||||++++++.... ..|..|........+..+    +..  ..+.+|||+|..++..    +.   .
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~-~~y~pTi~~~~~~~~~~~----~~~--v~L~iwDt~G~e~~~~----l~---~   67 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYP-GSYVPTVFENYTASFEID----KRR--IELNMWDTSGSSYYDN----VR---P   67 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC-CccCCccccceEEEEEEC----CEE--EEEEEEeCCCcHHHHH----Hh---H
Confidence            47999999999999999999976522 222222221111122221    111  2689999999865522    11   2


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----------------hHHHHHH
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRLQSLT  245 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----------------~~~~~l~  245 (310)
                      .++..+|++++|+|++++.+++.+ ..|..++..+.   .+.|+++|+||+|+....                +....+.
T Consensus        68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a  144 (222)
T cd04173          68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA  144 (222)
T ss_pred             HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence            345789999999999999998887 45666666544   368999999999996531                1122222


Q ss_pred             HHHHhcCCCccccCccC-CHHHHHHHHhhcc
Q 021615          246 EEILKIGCDKVTSETEL-SSEDAVKSLSTEG  275 (310)
Q Consensus       246 ~~l~~~g~~~~sa~~~~-gi~~l~~~l~~~~  275 (310)
                      +.+....+.++||+++. |+.++|.......
T Consensus       145 k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~  175 (222)
T cd04173         145 KQVGAVSYVECSSRSSERSVRDVFHVATVAS  175 (222)
T ss_pred             HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence            22222346679999988 4999998876644

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.78  E-value=3.3e-18  Score=173.87  Aligned_cols=160  Identities=21%  Similarity=0.215  Sum_probs=114.4

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc-cCCc
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA-HLGK  175 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~-~~~~  175 (310)
                      .....++|+++|.||||||||+|+|++.+..+ .++|++|.+...+......        ..+.+|||||+.... ....
T Consensus       271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~  342 (712)
T PRK09518        271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--------TDFKLVDTGGWEADVEGIDS  342 (712)
T ss_pred             ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--------EEEEEEeCCCcCCCCccHHH
Confidence            33456789999999999999999999987654 8899999876655544332        278999999987431 1122


Q ss_pred             hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC--
Q 021615          176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--  253 (310)
Q Consensus       176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~--  253 (310)
                      .+......+++.||+++||+|+++.....+ ..+.+.|+.     .++|+++|+||+|+.......    ..+..+++  
T Consensus       343 ~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~~~~----~~~~~lg~~~  412 (712)
T PRK09518        343 AIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-----AGKPVVLAVNKIDDQASEYDA----AEFWKLGLGE  412 (712)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-----cCCCEEEEEECcccccchhhH----HHHHHcCCCC
Confidence            344445566789999999999987544333 345556654     479999999999987542221    22222332  


Q ss_pred             -CccccCccCCHHHHHHHHhhcc
Q 021615          254 -DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 -~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                       .++||+++.|+.++++.+....
T Consensus       413 ~~~iSA~~g~GI~eLl~~i~~~l  435 (712)
T PRK09518        413 PYPISAMHGRGVGDLLDEALDSL  435 (712)
T ss_pred             eEEEECCCCCCchHHHHHHHHhc
Confidence             3489999999999999987765

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.78  E-value=2.6e-18  Score=144.75  Aligned_cols=156  Identities=17%  Similarity=0.197  Sum_probs=102.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|++|||||||++++.+.... ..+..|........+..+    ...+  .+.+|||||+.+....       ..
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~----~~~~--~l~i~Dt~G~~~~~~~-------~~   67 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYVADIEVD----GKQV--ELALWDTAGQEDYDRL-------RP   67 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccccceEEEEEEC----CEEE--EEEEEeCCCchhhhhc-------cc
Confidence            57999999999999999999986532 122222222112223221    1111  6899999998654221       11


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-------------HHHHHHH
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEI  248 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~l~~~l  248 (310)
                      ..+..+|++++|+|+++..+++++. .|..++..+.   .+.|+++|+||+|+.......             ....+..
T Consensus        68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~  144 (175)
T cd01870          68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA  144 (175)
T ss_pred             cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHH
Confidence            2457899999999999888777764 4666666543   368999999999986532211             1111112


Q ss_pred             Hh---cCCCccccCccCCHHHHHHHHhhcc
Q 021615          249 LK---IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       249 ~~---~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ..   ..+.++||+++.|++++|..++..+
T Consensus       145 ~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         145 NKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             HHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            22   2456799999999999999987543

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.77  E-value=3.6e-18  Score=143.11  Aligned_cols=147  Identities=22%  Similarity=0.245  Sum_probs=95.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHH
Q 021615          105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH  184 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~  184 (310)
                      |+++|.+|||||||++++.+..... .+. .|.......+...        ...+.+|||||..+.       ...+..+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~-~~~-pt~g~~~~~i~~~--------~~~l~i~Dt~G~~~~-------~~~~~~~   64 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLE-SVV-PTTGFNSVAIPTQ--------DAIMELLEIGGSQNL-------RKYWKRY   64 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcc-ccc-ccCCcceEEEeeC--------CeEEEEEECCCCcch-------hHHHHHH
Confidence            7899999999999999999775321 111 1221112222221        127899999998654       2234456


Q ss_pred             hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHH------HhcC--CCc-
Q 021615          185 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI------LKIG--CDK-  255 (310)
Q Consensus       185 l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l------~~~g--~~~-  255 (310)
                      ++.+|++++|+|+++...+.....++.++....   .+.|+++|+||+|+..... ..++.+.+      .+.+  +.+ 
T Consensus        65 ~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~---~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~  140 (164)
T cd04162          65 LSGSQGLIFVVDSADSERLPLARQELHQLLQHP---PDLPLVVLANKQDLPAARS-VQEIHKELELEPIARGRRWILQGT  140 (164)
T ss_pred             HhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC---CCCcEEEEEeCcCCcCCCC-HHHHHHHhCChhhcCCCceEEEEe
Confidence            789999999999998777766666666554322   4799999999999876432 22222221      1222  223 


Q ss_pred             -----cccCccCCHHHHHHHHh
Q 021615          256 -----VTSETELSSEDAVKSLS  272 (310)
Q Consensus       256 -----~sa~~~~gi~~l~~~l~  272 (310)
                           +|+.+++|+.++|..|.
T Consensus       141 Sa~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162         141 SLDDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             eecCCCChhHHHHHHHHHHHHh
Confidence                 45555999999998863

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.77  E-value=4.6e-18  Score=139.55  Aligned_cols=151  Identities=25%  Similarity=0.324  Sum_probs=99.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      .|+++|++|||||||+++|++.+......|  |.......+....        ..+.+|||||+.+.       ...+..
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~--------~~~~~~D~~g~~~~-------~~~~~~   63 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKGN--------VTLKVWDLGGQPRF-------RSMWER   63 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEECC--------EEEEEEECCCCHhH-------HHHHHH
Confidence            489999999999999999998764332222  2222222222211        26899999998543       223445


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------hcCCCcc
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDKV  256 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~~g~~~~  256 (310)
                      ++..+|++++|+|+++...+.....++..+... ....++|+++|+||+|+.+... ...+.+.+.       ...+..+
T Consensus        64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  141 (159)
T cd04159          64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALS-VDELIEQMNLKSITDREVSCYSI  141 (159)
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcC-HHHHHHHhCcccccCCceEEEEE
Confidence            678899999999998866655554444444321 1224689999999999876432 222222221       1234568


Q ss_pred             ccCccCCHHHHHHHHhh
Q 021615          257 TSETELSSEDAVKSLST  273 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~  273 (310)
                      |++++.|+.++++.+..
T Consensus       142 Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         142 SCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             EeccCCChHHHHHHHhh
Confidence            99999999999998753

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.77  E-value=2.5e-18  Score=154.48  Aligned_cols=111  Identities=40%  Similarity=0.689  Sum_probs=90.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC---------CCCccCCCceEEEeCCCCCccccC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT---------LGAEKYSSEATLADLPGLIEGAHL  173 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~---------~~~~~~~~~~~i~DtPG~~~~~~~  173 (310)
                      .++++||.||+|||||+|+|+......++|||+|++|+.+.+...+.         .+.......+++.|++|+..+++.
T Consensus        21 lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~  100 (391)
T KOG1491|consen   21 LKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASA  100 (391)
T ss_pred             ceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCccc
Confidence            46999999999999999999999988999999999999998864321         001111236899999999999999


Q ss_pred             CchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHH
Q 021615          174 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEEL  213 (310)
Q Consensus       174 ~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l  213 (310)
                      ++|++..|++|++.+|++++|+++..          -++..+++.+.+||
T Consensus       101 G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL  150 (391)
T KOG1491|consen  101 GEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEEL  150 (391)
T ss_pred             CcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHH
Confidence            99999999999999999999999865          24555555555544

>cd00157 Rho Rho (Ras homology) family

Probab=99.77  E-value=4.7e-18  Score=142.23  Aligned_cols=154  Identities=19%  Similarity=0.193  Sum_probs=99.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||+++|++........+ +........+...    ...  ..+.+|||||+.+....    .   .
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~----~~~--~~l~~~D~~g~~~~~~~----~---~   66 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVP-TVFDNYSATVTVD----GKQ--VNLGLWDTAGQEEYDRL----R---P   66 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeEEEEEEC----CEE--EEEEEEeCCCccccccc----c---h
Confidence            4799999999999999999998864221111 1111111111111    111  26899999999765221    1   1


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH------------HHHHHHHHH
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR------------LQSLTEEIL  249 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~------------~~~l~~~l~  249 (310)
                      ..++.+|++++|+|++++.++... ..|...+..+.   .+.|+++|+||+|+......            .+...+...
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~  143 (171)
T cd00157          67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK  143 (171)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH
Confidence            234689999999999987666554 34555665543   27999999999999765432            122223333


Q ss_pred             hc---CCCccccCccCCHHHHHHHHhh
Q 021615          250 KI---GCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       250 ~~---g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      ..   .+.++|++++.|+++++..+..
T Consensus       144 ~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         144 EIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             HhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence            33   4566899999999999988753

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.77  E-value=5.7e-18  Score=172.02  Aligned_cols=156  Identities=24%  Similarity=0.334  Sum_probs=111.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC--CchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~--~~~l~~~  180 (310)
                      .+|+++|.||||||||+|+|++.+..+++++++|.+...+.+.....        ++.++||||+.+....  ...+.+.
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~--------~i~lvDtPG~ysl~~~~~~~s~~E~   75 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDH--------QVTLVDLPGTYSLTTISSQTSLDEQ   75 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCce--------EEEEEECCCccccccccccccHHHH
Confidence            47999999999999999999999888899999999888888765432        7999999999765321  1123333


Q ss_pred             HHH-H--hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC--CCc
Q 021615          181 FLR-H--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDK  255 (310)
Q Consensus       181 ~~~-~--l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g--~~~  255 (310)
                      ..+ +  .+.+|++++|+|+++.+..   ..+..++.+     .++|+++|+||+|+.+.......+.+.-+.++  +..
T Consensus        76 i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e-----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvp  147 (772)
T PRK09554         76 IACHYILSGDADLLINVVDASNLERN---LYLTLQLLE-----LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIP  147 (772)
T ss_pred             HHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHH-----cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEE
Confidence            222 2  2478999999999874432   234455554     37999999999998744222222222222344  455


Q ss_pred             cccCccCCHHHHHHHHhhc
Q 021615          256 VTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~  274 (310)
                      +|+..+.|++++.+.+...
T Consensus       148 iSA~~g~GIdeL~~~I~~~  166 (772)
T PRK09554        148 LVSTRGRGIEALKLAIDRH  166 (772)
T ss_pred             EEeecCCCHHHHHHHHHHh
Confidence            8999999999999887654

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.77  E-value=3.7e-18  Score=143.96  Aligned_cols=153  Identities=19%  Similarity=0.146  Sum_probs=101.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|+|||||++++.+... ...+..|+.+.....+....    .  ...+.+|||||+.+....       ..
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~~~-------~~   66 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGY-PTEYVPTAFDNFSVVVLVDG----K--PVRLQLCDTAGQDEFDKL-------RP   66 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECC----E--EEEEEEEECCCChhhccc-------cc
Confidence            3799999999999999999987542 23344443222112222111    1  126899999999665332       11


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----------------HHHHHH
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----------------RLQSLT  245 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----------------~~~~l~  245 (310)
                      .+++.+|++++|+|.+++.+++.. +.|...+....   .+.|+++|+||+|+.....                ....+.
T Consensus        67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a  143 (173)
T cd04130          67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALA  143 (173)
T ss_pred             cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHH
Confidence            245689999999999998888776 35766776532   3689999999999864321                122222


Q ss_pred             HHHHhcCCCccccCccCCHHHHHHHHh
Q 021615          246 EEILKIGCDKVTSETELSSEDAVKSLS  272 (310)
Q Consensus       246 ~~l~~~g~~~~sa~~~~gi~~l~~~l~  272 (310)
                      +......+.++||+++.|++++|+.+.
T Consensus       144 ~~~~~~~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         144 EKIGACEYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             HHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence            222222566799999999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=2.3e-18  Score=137.47  Aligned_cols=160  Identities=19%  Similarity=0.163  Sum_probs=118.6

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  176 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~  176 (310)
                      .+-++||++||..|+|||.|+++++..-...  -.+.|+  +--+.+++...    .+  .+++||||+|++++    ++
T Consensus         4 ykflfkivlvgnagvgktclvrrftqglfpp--gqgatigvdfmiktvev~g----ek--iklqiwdtagqerf----rs   71 (213)
T KOG0095|consen    4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPP--GQGATIGVDFMIKTVEVNG----EK--IKLQIWDTAGQERF----RS   71 (213)
T ss_pred             cceeEEEEEEccCCcCcchhhhhhhccCCCC--CCCceeeeeEEEEEEEECC----eE--EEEEEeeccchHHH----HH
Confidence            4678999999999999999999999764222  112233  11122232221    12  28999999999876    33


Q ss_pred             HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh---cCC
Q 021615          177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGC  253 (310)
Q Consensus       177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~---~g~  253 (310)
                      +.   .++.+.++++++|+|++...+++-+-.|+.|++.|..  ..+--|+|+||+|+.+..+..+.+-+.+..   .-+
T Consensus        72 it---qsyyrsahalilvydiscqpsfdclpewlreie~yan--~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyf  146 (213)
T KOG0095|consen   72 IT---QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN--NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYF  146 (213)
T ss_pred             HH---HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh--cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhh
Confidence            33   4455689999999999999999999999999999964  345568999999998876666666666653   456


Q ss_pred             CccccCccCCHHHHHHHHhhcc
Q 021615          254 DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .++||++.++++.+|..++..+
T Consensus       147 letsakea~nve~lf~~~a~rl  168 (213)
T KOG0095|consen  147 LETSAKEADNVEKLFLDLACRL  168 (213)
T ss_pred             hhhcccchhhHHHHHHHHHHHH
Confidence            7799999999999998887654

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.77  E-value=1.2e-17  Score=143.20  Aligned_cols=158  Identities=22%  Similarity=0.232  Sum_probs=106.4

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC----
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----  174 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~--~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~----  174 (310)
                      ..++|+++|.+|||||||+|+|++.+  ..+++.+++|.......+.           ..+.+|||||+.......    
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~l~l~DtpG~~~~~~~~~~~~   91 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN-----------DKLRLVDLPGYGYAKVSKEEKE   91 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC-----------CeEEEeCCCCCCCcCCCchHHH
Confidence            56889999999999999999999865  3446677777654433221           279999999975421110    


Q ss_pred             --chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---HHHHHHHHH
Q 021615          175 --KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEIL  249 (310)
Q Consensus       175 --~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~l~~~l~  249 (310)
                        ..+...+++....++++++|+|++.+....+. .+...+..     .+.|+++++||+|+....+.   .+.+.+.+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~  165 (196)
T PRK00454         92 KWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE-----YGIPVLIVLTKADKLKKGERKKQLKKVRKALK  165 (196)
T ss_pred             HHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH-----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence              11223334444556789999998875444332 23344443     36899999999999764322   233444444


Q ss_pred             h--cCCCccccCccCCHHHHHHHHhhcc
Q 021615          250 K--IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       250 ~--~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .  ..+.++|++++.|++++++.+...+
T Consensus       166 ~~~~~~~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        166 FGDDEVILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             hcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence            3  4566789999999999999987654

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.77  E-value=4.3e-18  Score=138.64  Aligned_cols=137  Identities=21%  Similarity=0.224  Sum_probs=89.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      ||+++|.+|||||||+|+|++....   +. .|.     .+..           .-.+|||||+...   .....+....
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~---~~-~t~-----~~~~-----------~~~~iDt~G~~~~---~~~~~~~~~~   58 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL---YK-KTQ-----AVEY-----------NDGAIDTPGEYVE---NRRLYSALIV   58 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc---cc-cce-----eEEE-----------cCeeecCchhhhh---hHHHHHHHHH
Confidence            7999999999999999999987531   11 111     1111           1268999997311   1111222234


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC---CCccccCc
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVTSET  260 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g---~~~~sa~~  260 (310)
                      .++.+|++++|+|++++.++... .|.+.        ...|+++|+||+|+.+.....+...+.+...+   +.++|+++
T Consensus        59 ~~~~ad~vilv~d~~~~~s~~~~-~~~~~--------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  129 (142)
T TIGR02528        59 TAADADVIALVQSATDPESRFPP-GFASI--------FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVD  129 (142)
T ss_pred             HhhcCCEEEEEecCCCCCcCCCh-hHHHh--------ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCC
Confidence            46899999999999987765442 23221        13599999999999753222333333344433   45589999


Q ss_pred             cCCHHHHHHHHh
Q 021615          261 ELSSEDAVKSLS  272 (310)
Q Consensus       261 ~~gi~~l~~~l~  272 (310)
                      +.|++++|..++
T Consensus       130 ~~gi~~l~~~l~  141 (142)
T TIGR02528       130 EQGLEALVDYLN  141 (142)
T ss_pred             CCCHHHHHHHHh
Confidence            999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.77  E-value=1.1e-17  Score=136.44  Aligned_cols=155  Identities=25%  Similarity=0.195  Sum_probs=100.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      ++|+++|.+|+|||||+++|++........+++|.......+.....    .  ..+.+|||||+.+...    +..   
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~D~~G~~~~~~----~~~---   68 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGK----T--YKFNLLDTAGQEDYRA----IRR---   68 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCE----E--EEEEEEECCCcccchH----HHH---
Confidence            58999999999999999999998844466677777655544433220    0  2689999999765422    222   


Q ss_pred             HHhhhcCEEEEecccCCC-CcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHHHHHHHHhcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAE-NPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEEILKIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~-~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~l~~~l~~~g~~~~sa  258 (310)
                      .....++.++.++|.... ....... .+...+.....  .+.|+++|+||+|+....  +........+....+.++|+
T Consensus        69 ~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa  146 (161)
T TIGR00231        69 LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE--SNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSA  146 (161)
T ss_pred             HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc--cCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeec
Confidence            223456777777776654 3333222 33344444332  278999999999997642  22222333333445677999


Q ss_pred             CccCCHHHHHHHHh
Q 021615          259 ETELSSEDAVKSLS  272 (310)
Q Consensus       259 ~~~~gi~~l~~~l~  272 (310)
                      +.+.|+.++++.+.
T Consensus       147 ~~~~gv~~~~~~l~  160 (161)
T TIGR00231       147 ETGKNIDSAFKIVE  160 (161)
T ss_pred             CCCCCHHHHHHHhh
Confidence            99999999998863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=3.2e-18  Score=141.58  Aligned_cols=157  Identities=18%  Similarity=0.142  Sum_probs=111.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceE--eeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR--LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~--v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      ..+|+.++|..|||||.|+.+++...... .+ -.|+....+.  +..+.    .  .-+++||||+|+..+    .++.
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~krF~~-~h-d~TiGvefg~r~~~id~----k--~IKlqiwDtaGqe~f----rsv~   72 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQP-VH-DLTIGVEFGARMVTIDG----K--QIKLQIWDTAGQESF----RSVT   72 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhccCccc-cc-cceeeeeeceeEEEEcC----c--eEEEEEEecCCcHHH----HHHH
Confidence            35789999999999999999999876322 11 1333222221  22111    1  238999999999766    3334


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCC
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCD  254 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~  254 (310)
                      +   ++++.+-++++|+|+...+++..+..|+.+++.+..  .+..+++++||+|+....+    .-+.+.++ ..+-+.
T Consensus        73 ~---syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~--~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~e-hgLifm  146 (216)
T KOG0098|consen   73 R---SYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSN--ENMVIMLIGNKSDLEARREVSKEEGEAFARE-HGLIFM  146 (216)
T ss_pred             H---HHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcC--CCcEEEEEcchhhhhccccccHHHHHHHHHH-cCceee
Confidence            4   445688999999999999999999999999998752  4677899999999986533    23334333 223344


Q ss_pred             ccccCccCCHHHHHHHHhhcc
Q 021615          255 KVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ++||+++.|++++|...+...
T Consensus       147 ETSakt~~~VEEaF~nta~~I  167 (216)
T KOG0098|consen  147 ETSAKTAENVEEAFINTAKEI  167 (216)
T ss_pred             hhhhhhhhhHHHHHHHHHHHH
Confidence            699999999999998776543

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=3.1e-17  Score=138.82  Aligned_cols=157  Identities=27%  Similarity=0.269  Sum_probs=110.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~--~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      ..+.|+++|.+|||||||||+|++.+  ..++..|+.|+.++...+.           ..+.++|.||+.= +.-.....
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-----------~~~~lVDlPGYGy-Akv~k~~~   90 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-----------DELRLVDLPGYGY-AKVPKEVK   90 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-----------CcEEEEeCCCccc-ccCCHHHH
Confidence            45679999999999999999999987  6679999999988877664           1489999999852 22222222


Q ss_pred             HHH----HHHh---hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH---HHHHHHH
Q 021615          179 RNF----LRHL---RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL---QSLTEEI  248 (310)
Q Consensus       179 ~~~----~~~l---~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~---~~l~~~l  248 (310)
                      ..|    ..++   ..-.++++++|+..+....+. .+.+.+..     .+.|+++|+||+|.....+..   ..+.+.+
T Consensus        91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~-----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l  164 (200)
T COG0218          91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE-----LGIPVIVVLTKADKLKKSERNKQLNKVAEEL  164 (200)
T ss_pred             HHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH-----cCCCeEEEEEccccCChhHHHHHHHHHHHHh
Confidence            222    2233   345788999999886655554 34456665     479999999999999865443   3344333


Q ss_pred             Hh-cC----CCccccCccCCHHHHHHHHhhcc
Q 021615          249 LK-IG----CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       249 ~~-~g----~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .. ..    +...|+..+.|++++-..+....
T Consensus       165 ~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~  196 (200)
T COG0218         165 KKPPPDDQWVVLFSSLKKKGIDELKAKILEWL  196 (200)
T ss_pred             cCCCCccceEEEEecccccCHHHHHHHHHHHh
Confidence            21 11    33368999999999888775543

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.76  E-value=2.3e-17  Score=139.98  Aligned_cols=151  Identities=21%  Similarity=0.216  Sum_probs=101.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCC----------------CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIAD----------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL  167 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~----------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~  167 (310)
                      +|+++|.+|||||||+|+|++.......                ..++|.......+...        ...+.+|||||+
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~liDtpG~   72 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--------DRRVNFIDTPGH   72 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--------CEEEEEEeCCCc
Confidence            4899999999999999999987643311                1223333333333322        127899999998


Q ss_pred             CccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHH
Q 021615          168 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSL  244 (310)
Q Consensus       168 ~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l  244 (310)
                      .+.       ...+..++..+|++++|+|++.+....... +...+..     .+.|+++|+||+|+....+   ..+.+
T Consensus        73 ~~~-------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~~i~iv~nK~D~~~~~~~~~~~~~~  139 (189)
T cd00881          73 EDF-------SSEVIRGLSVSDGAILVVDANEGVQPQTRE-HLRIARE-----GGLPIIVAINKIDRVGEEDLEEVLREI  139 (189)
T ss_pred             HHH-------HHHHHHHHHhcCEEEEEEECCCCCcHHHHH-HHHHHHH-----CCCCeEEEEECCCCcchhcHHHHHHHH
Confidence            543       234556677999999999998766544433 3334433     3789999999999986322   23344


Q ss_pred             HHHHHhc----------------CCCccccCccCCHHHHHHHHhhcc
Q 021615          245 TEEILKI----------------GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       245 ~~~l~~~----------------g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .+.+...                .+.++|++.+.|+.+++..+....
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         140 KELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             HHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            4444432                234489999999999999987654

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.76  E-value=9.7e-18  Score=142.03  Aligned_cols=159  Identities=14%  Similarity=0.053  Sum_probs=105.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||++++++.... ..+..|+.......+....    ..  ..+.+|||||+.++.       ....
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~l~D~~g~~~~~-------~~~~   67 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFV-ESYYPTIENTFSKIIRYKG----QD--YHLEIVDTAGQDEYS-------ILPQ   67 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCc-cccCcchhhhEEEEEEECC----EE--EEEEEEECCChHhhH-------HHHH
Confidence            47999999999999999999977532 2222233222222222211    11  157899999986542       1222


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~sa~  259 (310)
                      .++..++++++|+|.++..+++....++..+..+. ...+.|+++|+||+|+...... .+.........  .+.++|++
T Consensus        68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  146 (180)
T cd04137          68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSAR  146 (180)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence            44568999999999999888888877777665532 2246899999999998643211 11222222333  35669999


Q ss_pred             ccCCHHHHHHHHhhccC
Q 021615          260 TELSSEDAVKSLSTEGG  276 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~~  276 (310)
                      ++.|+.+++..+.....
T Consensus       147 ~~~gv~~l~~~l~~~~~  163 (180)
T cd04137         147 ENENVEEAFELLIEEIE  163 (180)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999877653

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00880 Era_like Era (E

Probab=99.76  E-value=2.4e-17  Score=134.54  Aligned_cols=154  Identities=29%  Similarity=0.332  Sum_probs=108.9

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHh
Q 021615          107 LVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL  185 (310)
Q Consensus       107 lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l  185 (310)
                      ++|++|+|||||+++|++.... ....+.+|............       ...+.+|||||+.+...........+...+
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~   73 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-------LGPVVLIDTPGIDEAGGLGREREELARRVL   73 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-------CCcEEEEECCCCCccccchhhHHHHHHHHH
Confidence            5899999999999999998766 46777777766665554331       127999999999887654443334555667


Q ss_pred             hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHH------HHHHHhcCCCccccC
Q 021615          186 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL------TEEILKIGCDKVTSE  259 (310)
Q Consensus       186 ~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l------~~~l~~~g~~~~sa~  259 (310)
                      ..+|++++|+|++......... +......     .+.|+++|+||+|+....+.....      ........+..+|++
T Consensus        74 ~~~d~il~v~~~~~~~~~~~~~-~~~~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  147 (163)
T cd00880          74 ERADLILFVVDADLRADEEEEK-LLELLRE-----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSAL  147 (163)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeee
Confidence            8899999999999876665544 3333332     478999999999998754332221      111112345558999


Q ss_pred             ccCCHHHHHHHHhh
Q 021615          260 TELSSEDAVKSLST  273 (310)
Q Consensus       260 ~~~gi~~l~~~l~~  273 (310)
                      ++.|+++++..+..
T Consensus       148 ~~~~v~~l~~~l~~  161 (163)
T cd00880         148 TGEGIDELREALIE  161 (163)
T ss_pred             ccCCHHHHHHHHHh
Confidence            99999999998754

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.75  E-value=6.6e-18  Score=146.20  Aligned_cols=151  Identities=13%  Similarity=0.092  Sum_probs=103.9

Q ss_pred             EcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccce--EeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHh
Q 021615          108 VGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL  185 (310)
Q Consensus       108 vG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~--~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l  185 (310)
                      ||.+|||||||+++++..... ..+. +|......  .+..+    ...  ..+.||||||..++..       ....++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~-~~~~-~Tig~~~~~~~~~~~----~~~--~~l~iwDt~G~e~~~~-------l~~~~~   65 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFE-KKYV-ATLGVEVHPLVFHTN----RGP--IRFNVWDTAGQEKFGG-------LRDGYY   65 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCC-CCCC-CceeEEEEEEEEEEC----CEE--EEEEEEECCCchhhhh-------hhHHHh
Confidence            699999999999999965422 1221 22221111  11111    111  2789999999976522       223456


Q ss_pred             hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHH--HhcCCCccccCccCC
Q 021615          186 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI--LKIGCDKVTSETELS  263 (310)
Q Consensus       186 ~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l--~~~g~~~~sa~~~~g  263 (310)
                      +.+|++++|+|+++..+++.+..|..++..+.   .+.|+++|+||+|+.......+.. ...  ..+.+.++||+++.|
T Consensus        66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~  141 (200)
T smart00176       66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVKDRKVKAKSI-TFHRKKNLQYYDISAKSNYN  141 (200)
T ss_pred             cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCHHHH-HHHHHcCCEEEEEeCCCCCC
Confidence            78999999999999999999988999898764   368999999999986432111111 211  234577799999999


Q ss_pred             HHHHHHHHhhccCC
Q 021615          264 SEDAVKSLSTEGGE  277 (310)
Q Consensus       264 i~~l~~~l~~~~~~  277 (310)
                      +.++|..++.....
T Consensus       142 v~~~F~~l~~~i~~  155 (200)
T smart00176      142 FEKPFLWLARKLIG  155 (200)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999876543

Ran is involved in the active transport of proteins through nuclear pores.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.74  E-value=8.9e-18  Score=139.54  Aligned_cols=154  Identities=21%  Similarity=0.287  Sum_probs=109.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCce-eeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT-~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      ||+++|.+++|||||++++.+..... .+..|. .+.....+..+    ...  -.+.+||++|..+..    .+.   .
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~----~~~--~~l~i~D~~g~~~~~----~~~---~   66 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPE-NYIPTIGIDSYSKEVSID----GKP--VNLEIWDTSGQERFD----SLR---D   66 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTS-SSETTSSEEEEEEEEEET----TEE--EEEEEEEETTSGGGH----HHH---H
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccc-cccccccccccccccccc----ccc--ccccccccccccccc----ccc---c
Confidence            69999999999999999999875322 222221 22222223222    111  268999999986542    122   2


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~sa  258 (310)
                      ..++.+|++++|+|.++..+++.+..|...+..+.+  ...|+++|+||+|+.+..    +....+.+.+. ..+.++|+
T Consensus        67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa  143 (162)
T PF00071_consen   67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSA  143 (162)
T ss_dssp             HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBT
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEEC
Confidence            345789999999999999999999999999998765  358999999999987622    22334444443 56777999


Q ss_pred             CccCCHHHHHHHHhhc
Q 021615          259 ETELSSEDAVKSLSTE  274 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~  274 (310)
                      +++.|+.++|..+...
T Consensus       144 ~~~~~v~~~f~~~i~~  159 (162)
T PF00071_consen  144 KNGENVKEIFQELIRK  159 (162)
T ss_dssp             TTTTTHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            9999999999987654

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.74  E-value=2.4e-17  Score=137.45  Aligned_cols=141  Identities=20%  Similarity=0.229  Sum_probs=94.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      +|+++|.+|+|||||+|+|.+.... .        ...+.+.+..          ..+|||||+....   ....+.+..
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~-~--------~~~~~v~~~~----------~~~iDtpG~~~~~---~~~~~~~~~   60 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL-A--------RKTQAVEFND----------KGDIDTPGEYFSH---PRWYHALIT   60 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc-C--------ccceEEEECC----------CCcccCCccccCC---HHHHHHHHH
Confidence            6999999999999999999976421 0        1112222211          1369999984321   223334445


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC----CCccccC
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG----CDKVTSE  259 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g----~~~~sa~  259 (310)
                      .+..+|++++|+|+++..+...  .+...+   .   .++|+++++||+|+....  .+.+.+.+...+    +..+|++
T Consensus        61 ~~~~ad~il~v~d~~~~~s~~~--~~~~~~---~---~~~~ii~v~nK~Dl~~~~--~~~~~~~~~~~~~~~p~~~~Sa~  130 (158)
T PRK15467         61 TLQDVDMLIYVHGANDPESRLP--AGLLDI---G---VSKRQIAVISKTDMPDAD--VAATRKLLLETGFEEPIFELNSH  130 (158)
T ss_pred             HHhcCCEEEEEEeCCCcccccC--HHHHhc---c---CCCCeEEEEEccccCccc--HHHHHHHHHHcCCCCCEEEEECC
Confidence            5789999999999987654322  121121   1   267999999999986532  344555555554    4459999


Q ss_pred             ccCCHHHHHHHHhhccC
Q 021615          260 TELSSEDAVKSLSTEGG  276 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~~  276 (310)
                      ++.|++++|..+++...
T Consensus       131 ~g~gi~~l~~~l~~~~~  147 (158)
T PRK15467        131 DPQSVQQLVDYLASLTK  147 (158)
T ss_pred             CccCHHHHHHHHHHhch
Confidence            99999999999877663

>cd04129 Rho2 Rho2 subfamily

Probab=99.74  E-value=2.3e-17  Score=141.17  Aligned_cols=156  Identities=19%  Similarity=0.192  Sum_probs=102.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|++|+|||||+++|....... .+..|+.......+....    .  ...+.+|||||+.+....    .   .
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~----~--~~~l~i~Dt~g~~~~~~~----~---~   67 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRVDG----K--PVQLALWDTAGQEEYERL----R---P   67 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEECC----E--EEEEEEEECCCChhcccc----c---h
Confidence            379999999999999999998544221 111122111122222111    1  125789999998655321    1   1


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--------------hHHHHHHHH
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEAR--------------DRLQSLTEE  247 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--------------~~~~~l~~~  247 (310)
                      .++..+|++++|+|.++..+++.+. .|...+....   .+.|+++|+||+|+....              +....+.+.
T Consensus        68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (187)
T cd04129          68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC---PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE  144 (187)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence            2356899999999999888888775 5777776543   368999999999985421              112223333


Q ss_pred             HHhcCCCccccCccCCHHHHHHHHhhcc
Q 021615          248 ILKIGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       248 l~~~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +....+.++||+++.|++++|..++...
T Consensus       145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~  172 (187)
T cd04129         145 IGAKKYMECSALTGEGVDDVFEAATRAA  172 (187)
T ss_pred             hCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence            3223567799999999999999998655

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.73  E-value=4.4e-17  Score=158.89  Aligned_cols=155  Identities=26%  Similarity=0.382  Sum_probs=115.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc--ccCCchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG--AHLGKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~--~~~~~~l~~~  180 (310)
                      .+|+++|.||+|||||+|+|+|.+..++++|+.|.+...+.+.....        .+.++|.||.-.-  .+.++.+.+.
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--------~i~ivDLPG~YSL~~~S~DE~Var~   75 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--------EIEIVDLPGTYSLTAYSEDEKVARD   75 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--------eEEEEeCCCcCCCCCCCchHHHHHH
Confidence            35999999999999999999999999999999999999999876643        7999999998653  3445666666


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~~~s  257 (310)
                      |+.. ...|+++.|+|+++.+.  ++... -+|.+     .++|+++++|++|.....-   ..+.+.+.+ ...+..++
T Consensus        76 ~ll~-~~~D~ivnVvDAtnLeR--nLylt-lQLlE-----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L-GvPVv~tv  145 (653)
T COG0370          76 FLLE-GKPDLIVNVVDATNLER--NLYLT-LQLLE-----LGIPMILALNMIDEAKKRGIRIDIEKLSKLL-GVPVVPTV  145 (653)
T ss_pred             HHhc-CCCCEEEEEcccchHHH--HHHHH-HHHHH-----cCCCeEEEeccHhhHHhcCCcccHHHHHHHh-CCCEEEEE
Confidence            6441 46799999999997442  22222 23333     4899999999999865421   123333222 23444589


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |+.|.|++++........
T Consensus       146 A~~g~G~~~l~~~i~~~~  163 (653)
T COG0370         146 AKRGEGLEELKRAIIELA  163 (653)
T ss_pred             eecCCCHHHHHHHHHHhc
Confidence            999999999998876544

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.73  E-value=3.5e-17  Score=145.34  Aligned_cols=164  Identities=25%  Similarity=0.260  Sum_probs=118.7

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC----
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----  174 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~----  174 (310)
                      .....|+++|.||||||||.|.+.|.+... +..+.||.....+.+.....        ++.++||||++......    
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eT--------Qlvf~DTPGlvs~~~~r~~~l  141 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGET--------QLVFYDTPGLVSKKMHRRHHL  141 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCce--------EEEEecCCcccccchhhhHHH
Confidence            445679999999999999999999999765 88889999888888865533        89999999998753321    


Q ss_pred             -chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH------------
Q 021615          175 -KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL------------  241 (310)
Q Consensus       175 -~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~------------  241 (310)
                       ..+....+..+..||+++.|+|+++....-. -.++..++.|    ...|.++|+||+|.......+            
T Consensus       142 ~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y----s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l  216 (379)
T KOG1423|consen  142 MMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY----SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGEL  216 (379)
T ss_pred             HHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH----hcCCceeeccchhcchhhhHHhhhHHhcccccc
Confidence             1222344667889999999999996322222 2345667777    478999999999988643211            


Q ss_pred             ----HHHHHHHHhc----------CC------CccccCccCCHHHHHHHHhhccC
Q 021615          242 ----QSLTEEILKI----------GC------DKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       242 ----~~l~~~l~~~----------g~------~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                          .++.+.+...          |+      ..+|+..|.|++++-++|...+-
T Consensus       217 ~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  217 AKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             chhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence                1222222211          23      23799999999999999987664

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.72  E-value=1.3e-17  Score=132.98  Aligned_cols=159  Identities=19%  Similarity=0.151  Sum_probs=113.7

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  176 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~  176 (310)
                      +..+++..|+|.|++|||||+.++..... ...|. ||+  +-.+.+++..+    .  ..+++||||+|++.+    ..
T Consensus         5 ~dhLfkllIigDsgVGKssLl~rF~ddtF-s~sYi-tTiGvDfkirTv~i~G----~--~VkLqIwDtAGqErF----rt   72 (198)
T KOG0079|consen    5 YDHLFKLLIIGDSGVGKSSLLLRFADDTF-SGSYI-TTIGVDFKIRTVDING----D--RVKLQIWDTAGQERF----RT   72 (198)
T ss_pred             HHHHHHHHeecCCcccHHHHHHHHhhccc-ccceE-EEeeeeEEEEEeecCC----c--EEEEEEeecccHHHH----HH
Confidence            34567788999999999999999987632 22332 232  33344444322    1  237999999999765    22


Q ss_pred             HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHH-HHH--hcCC
Q 021615          177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE-EIL--KIGC  253 (310)
Q Consensus       177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~-~l~--~~g~  253 (310)
                         ..-.+.+..+++++|+|.++.+++.....|+++++...+   ..|-++|+||.|.++......+-.+ ...  .+.+
T Consensus        73 ---itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd---sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~  146 (198)
T KOG0079|consen   73 ---ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD---SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIEL  146 (198)
T ss_pred             ---HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc---cccceecccCCCCccceeeehHHHHHHHHhcCchh
Confidence               223345689999999999999999999999999998664   6788999999999875332222222 223  3456


Q ss_pred             CccccCccCCHHHHHHHHhhcc
Q 021615          254 DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .++|+++..+++..|.-+....
T Consensus       147 FETSaKe~~NvE~mF~cit~qv  168 (198)
T KOG0079|consen  147 FETSAKENENVEAMFHCITKQV  168 (198)
T ss_pred             eehhhhhcccchHHHHHHHHHH
Confidence            7799999999999998876544

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=9.8e-18  Score=157.14  Aligned_cols=168  Identities=22%  Similarity=0.251  Sum_probs=116.3

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc---C
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH---L  173 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~---~  173 (310)
                      .++...+|+++|+||||||||+|+|++.+..+ ++.|+||.+.....++..+.        ++.+.||+|+.+...   +
T Consensus       264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~--------~v~L~DTAGiRe~~~~~iE  335 (531)
T KOG1191|consen  264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGV--------PVRLSDTAGIREESNDGIE  335 (531)
T ss_pred             HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCe--------EEEEEeccccccccCChhH
Confidence            67788999999999999999999999999877 99999999988888775543        899999999988221   2


Q ss_pred             CchHHHHHHHHhhhcCEEEEecccCCCCcHHHHH--HHHHHHH----hcCCCCCCCCEEEEEeCCCCCCcHhHHHH-HHH
Q 021615          174 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR--TVKEELR----MYNPDYLERPFIVVLNKIDLPEARDRLQS-LTE  246 (310)
Q Consensus       174 ~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~--~~~~~l~----~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~-l~~  246 (310)
                      ..++.+++ +.++++|++++|+|+....+.++..  ...+...    .+.......|++++.||+|+...-..... ...
T Consensus       336 ~~gI~rA~-k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~  414 (531)
T KOG1191|consen  336 ALGIERAR-KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV  414 (531)
T ss_pred             HHhHHHHH-HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee
Confidence            23455554 5688999999999994433333322  1222211    11122245799999999999865221111 011


Q ss_pred             HHH-----hcCCCc-cccCccCCHHHHHHHHhhc
Q 021615          247 EIL-----KIGCDK-VTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       247 ~l~-----~~g~~~-~sa~~~~gi~~l~~~l~~~  274 (310)
                      ...     .+.... +++.+++|++++...+...
T Consensus       415 ~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~  448 (531)
T KOG1191|consen  415 YPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNI  448 (531)
T ss_pred             ccccccCcccceEEEeeechhhhHHHHHHHHHHH
Confidence            111     222222 7999999999999887553

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.72  E-value=5e-17  Score=161.48  Aligned_cols=148  Identities=25%  Similarity=0.389  Sum_probs=104.4

Q ss_pred             cCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC--CchHHHHHHHHhh
Q 021615          109 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRNFLRHLR  186 (310)
Q Consensus       109 G~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~--~~~l~~~~~~~l~  186 (310)
                      |.||||||||+|+|++.+..++++|++|.+...+.+..+..        ++.+|||||+.+....  .+.+.+.+.. .+
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--------~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~   71 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--------DIEIVDLPGIYSLTTFSLEEEVARDYLL-NE   71 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--------EEEEEECCCccccCccchHHHHHHHHHh-hc
Confidence            89999999999999999887899999999888877765432        6899999999775432  1222333322 24


Q ss_pred             hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCCccccCccCC
Q 021615          187 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVTSETELS  263 (310)
Q Consensus       187 ~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~~~sa~~~~g  263 (310)
                      .+|++++|+|+++.+.  .. .+..++..     .++|+++|+||+|+.+...   ..+.+.+.+ ...+.++|++++.|
T Consensus        72 ~aDvvI~VvDat~ler--~l-~l~~ql~~-----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l-g~pvv~tSA~tg~G  142 (591)
T TIGR00437        72 KPDLVVNVVDASNLER--NL-YLTLQLLE-----LGIPMILALNLVDEAEKKGIRIDEEKLEERL-GVPVVPTSATEGRG  142 (591)
T ss_pred             CCCEEEEEecCCcchh--hH-HHHHHHHh-----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc-CCCEEEEECCCCCC
Confidence            7899999999987432  22 22233333     3689999999999864322   122232222 23455689999999


Q ss_pred             HHHHHHHHhhc
Q 021615          264 SEDAVKSLSTE  274 (310)
Q Consensus       264 i~~l~~~l~~~  274 (310)
                      ++++++.+...
T Consensus       143 i~eL~~~i~~~  153 (591)
T TIGR00437       143 IERLKDAIRKA  153 (591)
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.72  E-value=1.1e-16  Score=158.39  Aligned_cols=152  Identities=20%  Similarity=0.200  Sum_probs=106.4

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      .+.+.|+++|.+|+|||||+++|.+.+......+++|.+.....+....       ...+++|||||+.++..       
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-------~~~i~~iDTPGhe~F~~-------  150 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED-------GKMITFLDTPGHEAFTS-------  150 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC-------CcEEEEEECCCCcchhh-------
Confidence            3457899999999999999999998775555566677655444443321       11689999999976532       


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc--------
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--------  251 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~--------  251 (310)
                      .+.+.+..+|++++|+|+.+....+..+.+ ..+..     .+.|+++++||+|+.+..  .+.+...+...        
T Consensus       151 ~r~rga~~aDiaILVVda~dgv~~qT~e~i-~~~~~-----~~vPiIVviNKiDl~~~~--~e~v~~~L~~~g~~~~~~~  222 (587)
T TIGR00487       151 MRARGAKVTDIVVLVVAADDGVMPQTIEAI-SHAKA-----ANVPIIVAINKIDKPEAN--PDRVKQELSEYGLVPEDWG  222 (587)
T ss_pred             HHHhhhccCCEEEEEEECCCCCCHhHHHHH-HHHHH-----cCCCEEEEEECcccccCC--HHHHHHHHHHhhhhHHhcC
Confidence            233556789999999999876555554444 23332     378999999999997532  12222333222        


Q ss_pred             ---CCCccccCccCCHHHHHHHHhh
Q 021615          252 ---GCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       252 ---g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                         .+.++||+++.|+.++++.+..
T Consensus       223 ~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       223 GDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             CCceEEEEECCCCCChHHHHHhhhh
Confidence               2556999999999999998754

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.72  E-value=1.5e-17  Score=143.91  Aligned_cols=159  Identities=31%  Similarity=0.444  Sum_probs=121.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      ++|+++|+|.+|||||+..+++.+...+.|.|||+....|.+++...        .+++.|.||+++++++++|.+++..
T Consensus        63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--------~IQllDLPGIieGAsqgkGRGRQvi  134 (364)
T KOG1486|consen   63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--------NIQLLDLPGIIEGASQGKGRGRQVI  134 (364)
T ss_pred             eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--------eEEEecCcccccccccCCCCCceEE
Confidence            67999999999999999999999999999999999999999988764        7999999999999999999999988


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHH--------------------------------------------HhcCC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEEL--------------------------------------------RMYNP  218 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l--------------------------------------------~~~~~  218 (310)
                      ...+.||++++|+|++..+...  +.+..||                                            ++|.-
T Consensus       135 avArtaDlilMvLDatk~e~qr--~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI  212 (364)
T KOG1486|consen  135 AVARTADLILMVLDATKSEDQR--EILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKI  212 (364)
T ss_pred             EEeecccEEEEEecCCcchhHH--HHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHee
Confidence            8888999999999998642211  1222232                                            22210


Q ss_pred             ----------------------CCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHHHhhcc
Q 021615          219 ----------------------DYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       219 ----------------------~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                                            +..-.+++.|.||+|...-+    ++.+..+.-.-..+|+....++..+++.+=..+
T Consensus       213 ~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~e----evdrlAr~PnsvViSC~m~lnld~lle~iWe~l  287 (364)
T KOG1486|consen  213 HNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIE----EVDRLARQPNSVVISCNMKLNLDRLLERIWEEL  287 (364)
T ss_pred             ccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceecHH----HHHHHhcCCCcEEEEeccccCHHHHHHHHHHHh
Confidence                                  00124788899999987643    232222334455689999999998888764433

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.71  E-value=1.3e-16  Score=137.18  Aligned_cols=144  Identities=19%  Similarity=0.244  Sum_probs=90.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CC---------------CCCceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI-AD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP  165 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~---------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP  165 (310)
                      +.+|+++|.+|+|||||+++|++..... ..               ..++|.......+...        ...+.+||||
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~--------~~~~~l~Dtp   73 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK--------DTKINIVDTP   73 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC--------CEEEEEEECC
Confidence            4579999999999999999999632111 11               1223333333333322        1278999999


Q ss_pred             CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHH
Q 021615          166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQS  243 (310)
Q Consensus       166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~  243 (310)
                      |+.++.       .....+++.+|++++|+|+++... .....++..+..     .+.|+++|+||+|+....  ...++
T Consensus        74 G~~~~~-------~~~~~~~~~~d~~ilV~d~~~~~~-~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~  140 (194)
T cd01891          74 GHADFG-------GEVERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALE-----LGLKPIVVINKIDRPDARPEEVVDE  140 (194)
T ss_pred             CcHHHH-------HHHHHHHHhcCEEEEEEECCCCcc-HHHHHHHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHH
Confidence            996642       234456789999999999987432 233334444433     368999999999996432  22344


Q ss_pred             HHHHHHh---------cCCCccccCccCCHHH
Q 021615          244 LTEEILK---------IGCDKVTSETELSSED  266 (310)
Q Consensus       244 l~~~l~~---------~g~~~~sa~~~~gi~~  266 (310)
                      +.+.+..         ..+..+|+++|.|+.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~  172 (194)
T cd01891         141 VFDLFIELGATEEQLDFPVLYASAKNGWASLN  172 (194)
T ss_pred             HHHHHHHhCCccccCccCEEEeehhccccccc
Confidence            4444422         2234479898877643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR00092 GTP-binding protein YchF

Probab=99.71  E-value=6.1e-17  Score=150.49  Aligned_cols=116  Identities=35%  Similarity=0.625  Sum_probs=96.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCC--------C-CCccCCCceEEEeCCCCCcccc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPT--------L-GAEKYSSEATLADLPGLIEGAH  172 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~--------~-~~~~~~~~~~i~DtPG~~~~~~  172 (310)
                      .+++|||.||+|||||+|+|++..+ .+++|||||..|+.+.+.....        . +.......+.++|+||++++++
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            5799999999999999999999998 8899999999999999875431        0 0000113689999999999999


Q ss_pred             CCchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHHHhcCC
Q 021615          173 LGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNP  218 (310)
Q Consensus       173 ~~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l~~~~~  218 (310)
                      .+.+++..|+.+++.||++++|+|+..          .++..++..+..||..++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~  138 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADE  138 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhH
Confidence            999999999999999999999999864          2577888888888776643

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.71  E-value=4.7e-17  Score=131.87  Aligned_cols=156  Identities=20%  Similarity=0.214  Sum_probs=111.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceE------eeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR------LDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  175 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~------v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~  175 (310)
                      -+++.++|.+-+|||||+..++..+..--.      +|+.|.      ++..+   +  +..++++|||+|++++    +
T Consensus         8 qfrlivigdstvgkssll~~ft~gkfaels------dptvgvdffarlie~~p---g--~riklqlwdtagqerf----r   72 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELS------DPTVGVDFFARLIELRP---G--YRIKLQLWDTAGQERF----R   72 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhcCcccccC------CCccchHHHHHHHhcCC---C--cEEEEEEeeccchHHH----H
Confidence            356889999999999999999987632211      333332      12221   1  2238999999999877    3


Q ss_pred             hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-h--cC
Q 021615          176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-K--IG  252 (310)
Q Consensus       176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-~--~g  252 (310)
                      ++.+   ++.+++-++++|+|+++..++++.+.|.+|...+-......-+.+|+.|+|+....+.-.+-.+.+. .  +.
T Consensus        73 sitk---syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~  149 (213)
T KOG0091|consen   73 SITK---SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA  149 (213)
T ss_pred             HHHH---HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCce
Confidence            3443   4556888999999999999999999999998876543334457889999999865443223333333 3  44


Q ss_pred             CCccccCccCCHHHHHHHHhhcc
Q 021615          253 CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +.++|++++.++++.|..|+.+.
T Consensus       150 FVETSak~g~NVeEAF~mlaqeI  172 (213)
T KOG0091|consen  150 FVETSAKNGCNVEEAFDMLAQEI  172 (213)
T ss_pred             EEEecccCCCcHHHHHHHHHHHH
Confidence            66799999999999999887643

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.71  E-value=1e-16  Score=139.57  Aligned_cols=144  Identities=19%  Similarity=0.149  Sum_probs=92.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCC-------------------------------CCCCceeeccceEeeCCCCCCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTLGA  152 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~-------------------------------~~~~tT~~~~~~~v~~~~~~~~  152 (310)
                      +|+++|.+|+|||||+++|+.....+.                               ...++|++.....+...     
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~-----   75 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP-----   75 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC-----
Confidence            589999999999999999986543221                               11455665555544432     


Q ss_pred             ccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 021615          153 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI  232 (310)
Q Consensus       153 ~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~  232 (310)
                         +.++.++||||+.++       .......+..+|++++|+|++.+...+... ....+...    ...++++|+||+
T Consensus        76 ---~~~~~liDTpG~~~~-------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~~~~~~~~----~~~~iIvviNK~  140 (208)
T cd04166          76 ---KRKFIIADTPGHEQY-------TRNMVTGASTADLAILLVDARKGVLEQTRR-HSYILSLL----GIRHVVVAVNKM  140 (208)
T ss_pred             ---CceEEEEECCcHHHH-------HHHHHHhhhhCCEEEEEEECCCCccHhHHH-HHHHHHHc----CCCcEEEEEEch
Confidence               237899999998543       233455678999999999998754333322 22333332    124578899999


Q ss_pred             CCCCc-Hh----HHHHHHHHHHhcC-----CCccccCccCCHHHH
Q 021615          233 DLPEA-RD----RLQSLTEEILKIG-----CDKVTSETELSSEDA  267 (310)
Q Consensus       233 Dl~~~-~~----~~~~l~~~l~~~g-----~~~~sa~~~~gi~~l  267 (310)
                      |+... .+    ...++.+.+..++     +..+||+++.|+.+.
T Consensus       141 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         141 DLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             hcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            99753 22    1234444445555     345899999998754

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.71  E-value=2.8e-17  Score=139.38  Aligned_cols=153  Identities=19%  Similarity=0.265  Sum_probs=103.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .-.+|+++|+.|||||||+++|.......   ..+|...+...+....        ..+.+||.+|.....       ..
T Consensus        13 ~~~~ililGl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i~~~~--------~~~~~~d~gG~~~~~-------~~   74 (175)
T PF00025_consen   13 KEIKILILGLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEIKYKG--------YSLTIWDLGGQESFR-------PL   74 (175)
T ss_dssp             SEEEEEEEESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEEEETT--------EEEEEEEESSSGGGG-------GG
T ss_pred             cEEEEEEECCCccchHHHHHHhhhccccc---cCcccccccceeeeCc--------EEEEEEecccccccc-------cc
Confidence            34679999999999999999998654111   1223333334444332        279999999985432       23


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hcC------
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIG------  252 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~g------  252 (310)
                      |..++..+|+++||+|+++..........+.++-. .....+.|+++++||+|+.+... .+++...+.  .+.      
T Consensus        75 w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~-~~~~~~~piLIl~NK~D~~~~~~-~~~i~~~l~l~~l~~~~~~~  152 (175)
T PF00025_consen   75 WKSYFQNADGIIFVVDSSDPERLQEAKEELKELLN-DPELKDIPILILANKQDLPDAMS-EEEIKEYLGLEKLKNKRPWS  152 (175)
T ss_dssp             GGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHT-SGGGTTSEEEEEEESTTSTTSST-HHHHHHHTTGGGTTSSSCEE
T ss_pred             ceeeccccceeEEEEecccceeecccccchhhhcc-hhhcccceEEEEeccccccCcch-hhHHHhhhhhhhcccCCceE
Confidence            44566789999999999987665555444444433 22335799999999999987533 344544443  222      


Q ss_pred             CCccccCccCCHHHHHHHHhh
Q 021615          253 CDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      +..+|+.+|+|+.+.+++|..
T Consensus       153 v~~~sa~~g~Gv~e~l~WL~~  173 (175)
T PF00025_consen  153 VFSCSAKTGEGVDEGLEWLIE  173 (175)
T ss_dssp             EEEEBTTTTBTHHHHHHHHHH
T ss_pred             EEeeeccCCcCHHHHHHHHHh
Confidence            334899999999999999865

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.9e-16  Score=126.18  Aligned_cols=163  Identities=12%  Similarity=0.070  Sum_probs=115.7

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      .....+|+.++|.+.+|||||+.+..+....++-+....++-...++....    .  ..++++|||+|++..       
T Consensus        17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~----k--RiklQiwDTagqEry-------   83 (193)
T KOG0093|consen   17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSD----K--RIKLQIWDTAGQERY-------   83 (193)
T ss_pred             cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecc----c--EEEEEEEecccchhh-------
Confidence            445566999999999999999999998764332211111121222222111    1  127899999999764       


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhcCC--C
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIGC--D  254 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~g~--~  254 (310)
                      ....-.+++.++++++++|+++.+++...+.|...++.|..  .+.|+|+|+||||+.++... .+.-.....++|+  .
T Consensus        84 rtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw--~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefF  161 (193)
T KOG0093|consen   84 RTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSW--DNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFF  161 (193)
T ss_pred             hHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeec--cCceEEEEecccCCccceeeeHHHHHHHHHHhChHHh
Confidence            22233456799999999999999999999999999998865  57899999999999875321 2333344445554  4


Q ss_pred             ccccCccCCHHHHHHHHhhcc
Q 021615          255 KVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +.|++...+++++|..|....
T Consensus       162 EtSaK~NinVk~~Fe~lv~~I  182 (193)
T KOG0093|consen  162 ETSAKENINVKQVFERLVDII  182 (193)
T ss_pred             hhcccccccHHHHHHHHHHHH
Confidence            589999999999999876544

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.70  E-value=2.1e-16  Score=135.36  Aligned_cols=155  Identities=24%  Similarity=0.337  Sum_probs=101.7

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC------------------CCCceeeccceEeeCCCCCCCccCCCceEEE
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD------------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLA  162 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~------------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~  162 (310)
                      ...+|+++|..++|||||+++|+.....+..                  ....|.......+...      .-...++++
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~------~~~~~i~~i   75 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKN------ENNRKITLI   75 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBT------ESSEEEEEE
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccc------ccccceeec
Confidence            4567999999999999999999865422211                  1122332222223200      012379999


Q ss_pred             eCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hH
Q 021615          163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DR  240 (310)
Q Consensus       163 DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~  240 (310)
                      ||||+.++       .....+.+..+|++++|+|+.++...+..+.+ ..+..     .+.|+++|+||+|+...+  +.
T Consensus        76 DtPG~~~f-------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l-~~~~~-----~~~p~ivvlNK~D~~~~~~~~~  142 (188)
T PF00009_consen   76 DTPGHEDF-------IKEMIRGLRQADIAILVVDANDGIQPQTEEHL-KILRE-----LGIPIIVVLNKMDLIEKELEEI  142 (188)
T ss_dssp             EESSSHHH-------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHH-HHHHH-----TT-SEEEEEETCTSSHHHHHHH
T ss_pred             ccccccce-------eecccceecccccceeeeeccccccccccccc-ccccc-----cccceEEeeeeccchhhhHHHH
Confidence            99998553       33556668899999999999987655554433 45555     478999999999998321  22


Q ss_pred             HHHHHHHH-HhcC--------CCccccCccCCHHHHHHHHhhc
Q 021615          241 LQSLTEEI-LKIG--------CDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       241 ~~~l~~~l-~~~g--------~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                      .+++.+.+ +..+        +..+|+.++.|+.++++.+...
T Consensus       143 ~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~  185 (188)
T PF00009_consen  143 IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVEL  185 (188)
T ss_dssp             HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHh
Confidence            33333222 2232        4458999999999999988654

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.70  E-value=2.8e-16  Score=159.22  Aligned_cols=151  Identities=20%  Similarity=0.203  Sum_probs=107.0

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      .+.+.|+++|.+|+|||||+++|.+........++.|.+.....+....        ..++||||||+.++..       
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--------~~ItfiDTPGhe~F~~-------  352 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--------GKITFLDTPGHEAFTA-------  352 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--------EEEEEEECCCCccchh-------
Confidence            4678999999999999999999998765555566677655544444321        2789999999976632       


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------h--
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------K--  250 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~--  250 (310)
                      .+.+.+..+|++++|||+.+....+..+.| ..+..     .+.|+++|+||+|+....  .+.+...+.       .  
T Consensus       353 m~~rga~~aDiaILVVdAddGv~~qT~e~i-~~a~~-----~~vPiIVviNKiDl~~a~--~e~V~~eL~~~~~~~e~~g  424 (787)
T PRK05306        353 MRARGAQVTDIVVLVVAADDGVMPQTIEAI-NHAKA-----AGVPIIVAINKIDKPGAN--PDRVKQELSEYGLVPEEWG  424 (787)
T ss_pred             HHHhhhhhCCEEEEEEECCCCCCHhHHHHH-HHHHh-----cCCcEEEEEECccccccC--HHHHHHHHHHhcccHHHhC
Confidence            334556789999999999886555554444 23333     478999999999997532  112222221       1  


Q ss_pred             --cCCCccccCccCCHHHHHHHHhh
Q 021615          251 --IGCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       251 --~g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                        ..+.++||+++.|+.++++.+..
T Consensus       425 ~~vp~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        425 GDTIFVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             CCceEEEEeCCCCCCchHHHHhhhh
Confidence              23566899999999999998764

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.69  E-value=2.2e-16  Score=128.07  Aligned_cols=156  Identities=21%  Similarity=0.206  Sum_probs=108.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      -.+|.++|..||||||++++|.+..+..   .-.|..-++.++.+...        ++++||.-|+.       .+...|
T Consensus        16 E~riLiLGLdNsGKTti~~kl~~~~~~~---i~pt~gf~Iktl~~~~~--------~L~iwDvGGq~-------~lr~~W   77 (185)
T KOG0073|consen   16 EVRILILGLDNSGKTTIVKKLLGEDTDT---ISPTLGFQIKTLEYKGY--------TLNIWDVGGQK-------TLRSYW   77 (185)
T ss_pred             eeEEEEEecCCCCchhHHHHhcCCCccc---cCCccceeeEEEEecce--------EEEEEEcCCcc-------hhHHHH
Confidence            4679999999999999999999886332   11222223333433322        79999999984       445566


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--H---HHHHHHHHHhc--CCC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--R---LQSLTEEILKI--GCD  254 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~---~~~l~~~l~~~--g~~  254 (310)
                      ..|++.+|++|||+|.++...+++....+.++-. ...+.+.|+++++||.|+..+-.  .   .-.+.+.+...  .+.
T Consensus        78 ~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~-eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~  156 (185)
T KOG0073|consen   78 KNYFESTDGLIWVVDSSDRMRMQECKQELTELLV-EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLV  156 (185)
T ss_pred             HHhhhccCeEEEEEECchHHHHHHHHHHHHHHHh-hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEE
Confidence            6778999999999999987766665554455443 45567899999999999985421  1   11222222332  445


Q ss_pred             ccccCccCCHHHHHHHHhhccC
Q 021615          255 KVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      .+++.+|+++.+-+.+|+....
T Consensus       157 ~cs~~tge~l~~gidWL~~~l~  178 (185)
T KOG0073|consen  157 KCSAVTGEDLLEGIDWLCDDLM  178 (185)
T ss_pred             EEeccccccHHHHHHHHHHHHH
Confidence            5899999999999999877653

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.5e-16  Score=127.48  Aligned_cols=158  Identities=16%  Similarity=0.104  Sum_probs=111.0

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  176 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~  176 (310)
                      ...++|++++|+.|+|||.|+.++...+.+-  +...+......+..+...        ..+++||||+|++++    +.
T Consensus         6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK--------~vKLQIWDTAGQErF----RS   73 (214)
T KOG0086|consen    6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGK--------TVKLQIWDTAGQERF----RS   73 (214)
T ss_pred             hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCc--------EEEEEEeecccHHHH----HH
Confidence            4567899999999999999999999776332  111111111111111111        127999999999876    33


Q ss_pred             HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHH-H--hcCC
Q 021615          177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-L--KIGC  253 (310)
Q Consensus       177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l-~--~~g~  253 (310)
                      ..+   .+.+.+-+.++|+|+++.++++.+..|+...+...+  .++-+++++||.|+..+.+..-.-...+ .  .+-+
T Consensus        74 VtR---sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs--~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~f  148 (214)
T KOG0086|consen   74 VTR---SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMF  148 (214)
T ss_pred             HHH---HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCC--CcEEEEEeCChhhcChhhhhhHHHHHhhhcccceee
Confidence            344   445688899999999999999999999999887654  4577888999999987654322222222 2  3567


Q ss_pred             CccccCccCCHHHHHHHHhh
Q 021615          254 DKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~  273 (310)
                      .++|+.+|.++++.|-..+.
T Consensus       149 lETSa~TGeNVEEaFl~c~~  168 (214)
T KOG0086|consen  149 LETSALTGENVEEAFLKCAR  168 (214)
T ss_pred             eeecccccccHHHHHHHHHH
Confidence            78999999999999976554

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.69  E-value=7.6e-16  Score=133.63  Aligned_cols=160  Identities=18%  Similarity=0.153  Sum_probs=96.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCC--C-CCCCCceeeccceEeeCC---------C----------C------CCCccC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPD--I-ADYPFTTLMPNLGRLDGD---------P----------T------LGAEKY  155 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~--i-~~~~~tT~~~~~~~v~~~---------~----------~------~~~~~~  155 (310)
                      +|+++|+.++|||||+.+|++....  . .-.-..|.......+...         +          .      .+....
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL   81 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence            6899999999999999999876210  0 001111221111111110         0          0      000001


Q ss_pred             CCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCc-HHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615          156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  234 (310)
Q Consensus       156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~-~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl  234 (310)
                      ...+.+|||||+.+       +...++..+..+|++++|+|+.++.. .+... .+..+..+    ...|+++|+||+|+
T Consensus        82 ~~~i~~iDtPG~~~-------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-~l~~~~~~----~~~~iiivvNK~Dl  149 (203)
T cd01888          82 VRHVSFVDCPGHEI-------LMATMLSGAAVMDGALLLIAANEPCPQPQTSE-HLAALEIM----GLKHIIIVQNKIDL  149 (203)
T ss_pred             ccEEEEEECCChHH-------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHH-HHHHHHHc----CCCcEEEEEEchhc
Confidence            14789999999743       44566777788999999999987422 22222 22333332    12579999999999


Q ss_pred             CCcHh---HHHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhhcc
Q 021615          235 PEARD---RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       235 ~~~~~---~~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ....+   ..+.+.+.+..     ..+..+|++++.|++++++.++..+
T Consensus       150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            86432   22344444432     2345689999999999999987655

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.68  E-value=5.5e-16  Score=155.87  Aligned_cols=156  Identities=17%  Similarity=0.161  Sum_probs=106.9

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ...+.|+++|.+|+|||||+++|.+........++.|.......+....  ...  ...+++|||||+..+       ..
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~--~~~--~~kItfiDTPGhe~F-------~~  310 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEY--KDE--NQKIVFLDTPGHEAF-------SS  310 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEe--cCC--ceEEEEEECCcHHHH-------HH
Confidence            4668999999999999999999998765555555666544433332210  000  137999999998544       33


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh---------
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---------  250 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~---------  250 (310)
                      .+.+.+..+|++++|||+.+....+..+.+. .+..     .+.|+++|+||+|+....  .+.+.+.+..         
T Consensus       311 mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~-~~k~-----~~iPiIVViNKiDl~~~~--~e~v~~eL~~~~ll~e~~g  382 (742)
T CHL00189        311 MRSRGANVTDIAILIIAADDGVKPQTIEAIN-YIQA-----ANVPIIVAINKIDKANAN--TERIKQQLAKYNLIPEKWG  382 (742)
T ss_pred             HHHHHHHHCCEEEEEEECcCCCChhhHHHHH-HHHh-----cCceEEEEEECCCccccC--HHHHHHHHHHhccchHhhC
Confidence            3445678899999999998865555554443 3332     478999999999997542  1222222221         


Q ss_pred             --cCCCccccCccCCHHHHHHHHhhc
Q 021615          251 --IGCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       251 --~g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                        ..+.++||+++.|+.+++..+...
T Consensus       383 ~~vpvv~VSAktG~GIdeLle~I~~l  408 (742)
T CHL00189        383 GDTPMIPISASQGTNIDKLLETILLL  408 (742)
T ss_pred             CCceEEEEECCCCCCHHHHHHhhhhh
Confidence              235568999999999999987654

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.68  E-value=2.6e-17  Score=132.68  Aligned_cols=163  Identities=19%  Similarity=0.185  Sum_probs=112.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      -+||+++|..-+|||||+-+++..+..-  ...+|+.....  .-.-.+++  ....+.||||+|+.++-    .++..+
T Consensus        13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~--kHlsTlQASF~--~kk~n~ed--~ra~L~IWDTAGQErfH----ALGPIY   82 (218)
T KOG0088|consen   13 KFKIVLLGEGCVGKTSLVLRYVENKFNC--KHLSTLQASFQ--NKKVNVED--CRADLHIWDTAGQERFH----ALGPIY   82 (218)
T ss_pred             eeEEEEEcCCccchhHHHHHHHHhhcch--hhHHHHHHHHh--hccccccc--ceeeeeeeeccchHhhh----ccCceE
Confidence            3789999999999999999998765322  11123211110  00001111  12368999999998873    333343


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-HHHHHHHHhc--CCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKI--GCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~l~~~l~~~--g~~~~sa  258 (310)
                         ++.++++++|+|+++.++++..+.|..||+....  ....+++|+||+|+..+.... .+.....+..  .+.++||
T Consensus        83 ---YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG--nei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSA  157 (218)
T KOG0088|consen   83 ---YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG--NEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSA  157 (218)
T ss_pred             ---EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC--CeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheeccc
Confidence               3589999999999999999999999999997643  346789999999998654321 2222222233  3566999


Q ss_pred             CccCCHHHHHHHHhhccCCcc
Q 021615          259 ETELSSEDAVKSLSTEGGEAD  279 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~~~~~  279 (310)
                      +...|+.++|..|...+.+..
T Consensus       158 k~N~Gi~elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  158 KDNVGISELFESLTAKMIEHS  178 (218)
T ss_pred             ccccCHHHHHHHHHHHHHHHh
Confidence            999999999999988776544

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.67  E-value=1.2e-15  Score=151.73  Aligned_cols=158  Identities=22%  Similarity=0.230  Sum_probs=104.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC---------------CCCceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP  165 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~---------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP  165 (310)
                      .+.+|+++|.+++|||||+++|+.....+..               ..+.|.......+.+.. .++..  ..+++||||
T Consensus         2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~-~~g~~--~~l~liDTP   78 (595)
T TIGR01393         2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKA-KDGET--YVLNLIDTP   78 (595)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEc-CCCCE--EEEEEEECC
Confidence            3568999999999999999999875322211               11333332222222210 01111  278999999


Q ss_pred             CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHH
Q 021615          166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQS  243 (310)
Q Consensus       166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~  243 (310)
                      |+.++.       ..+.+++..||++++|+|+++....++...|+..+.      .+.|+++|+||+|+....  ...++
T Consensus        79 G~~dF~-------~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~~~~~~~~e  145 (595)
T TIGR01393        79 GHVDFS-------YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE------NDLEIIPVINKIDLPSADPERVKKE  145 (595)
T ss_pred             CcHHHH-------HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCCccCHHHHHHH
Confidence            997652       244566789999999999998777776666654443      367999999999997532  12233


Q ss_pred             HHHHHHhcC---CCccccCccCCHHHHHHHHhhcc
Q 021615          244 LTEEILKIG---CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       244 l~~~l~~~g---~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +.+.+. +.   +..+||+++.|+.++++.+....
T Consensus       146 l~~~lg-~~~~~vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       146 IEEVIG-LDASEAILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             HHHHhC-CCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence            333222 21   35589999999999999987755

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.67  E-value=1.6e-15  Score=122.96  Aligned_cols=138  Identities=20%  Similarity=0.249  Sum_probs=98.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|.+||+++||||||+++|.+.+...   . .|..     +.+.           =.++||||--   .++..+-+...
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~~---~-KTq~-----i~~~-----------~~~IDTPGEy---iE~~~~y~aLi   58 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIRY---K-KTQA-----IEYY-----------DNTIDTPGEY---IENPRFYHALI   58 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCCc---C-ccce-----eEec-----------ccEEECChhh---eeCHHHHHHHH
Confidence            479999999999999999999876321   1 1211     2111           1459999942   22355555666


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCc---cccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDK---VTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~---~sa~  259 (310)
                      .....||++++|.|++++.....-.    ....     ..+|+|-|+||+|+.......+...+.|...|+..   +|+.
T Consensus        59 ~ta~dad~V~ll~dat~~~~~~pP~----fa~~-----f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~  129 (143)
T PF10662_consen   59 VTAQDADVVLLLQDATEPRSVFPPG----FASM-----FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAV  129 (143)
T ss_pred             HHHhhCCEEEEEecCCCCCccCCch----hhcc-----cCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECC
Confidence            6678999999999999754321111    1111     36899999999999965566788888888877665   8999


Q ss_pred             ccCCHHHHHHHHh
Q 021615          260 TELSSEDAVKSLS  272 (310)
Q Consensus       260 ~~~gi~~l~~~l~  272 (310)
                      +++|++++.++|.
T Consensus       130 ~~eGi~eL~~~L~  142 (143)
T PF10662_consen  130 TGEGIEELKDYLE  142 (143)
T ss_pred             CCcCHHHHHHHHh
Confidence            9999999999874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.67  E-value=1.5e-15  Score=125.70  Aligned_cols=153  Identities=22%  Similarity=0.260  Sum_probs=97.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC--CCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC---C---c
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA--KPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL---G---K  175 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~--~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~---~---~  175 (310)
                      +|+++|.+|||||||+|.|++.  .+..+..+++|.........           ..+.+|||||+......   .   .
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~~~D~~g~~~~~~~~~~~~~~~   69 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-----------DKFRLVDLPGYGYAKVSKEVKEKWG   69 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-----------CeEEEecCCCccccccCHHHHHHHH
Confidence            5899999999999999999943  33445666666544332221           16899999998654210   0   1


Q ss_pred             hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---HHHHHHHHH---
Q 021615          176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEIL---  249 (310)
Q Consensus       176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~l~~~l~---  249 (310)
                      .+...+......++++++|+|.......... .+.+.+..     .+.|+++|+||+|+....+.   ...+...+.   
T Consensus        70 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~-----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~  143 (170)
T cd01876          70 KLIEEYLENRENLKGVVLLIDSRHGPTEIDL-EMLDWLEE-----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFE  143 (170)
T ss_pred             HHHHHHHHhChhhhEEEEEEEcCcCCCHhHH-HHHHHHHH-----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhcc
Confidence            1222333333457889999998865433322 23344544     25899999999999654321   122222332   


Q ss_pred             -hcCCCccccCccCCHHHHHHHHhh
Q 021615          250 -KIGCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       250 -~~g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                       ...+..+|++++.|+.++++.+.+
T Consensus       144 ~~~~~~~~Sa~~~~~~~~l~~~l~~  168 (170)
T cd01876         144 IDPPIILFSSLKGQGIDELRALIEK  168 (170)
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHH
Confidence             224446899999999999998865

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.66  E-value=8.9e-17  Score=150.68  Aligned_cols=163  Identities=23%  Similarity=0.309  Sum_probs=120.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH-
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR-  179 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~-  179 (310)
                      ..++++|+|+||+|||||+|.++.+++.+.+|+|||.....|.+++.-.        +++++||||+.+...+.....+ 
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYl--------rwQViDTPGILD~plEdrN~IEm  238 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYL--------RWQVIDTPGILDRPEEDRNIIEM  238 (620)
T ss_pred             CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhee--------eeeecCCccccCcchhhhhHHHH
Confidence            3457899999999999999999999999999999999888888766532        7999999999887655443222 


Q ss_pred             ---HHHHHhhhcCEEEEecccCC--CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhc
Q 021615          180 ---NFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKI  251 (310)
Q Consensus       180 ---~~~~~l~~~d~il~VvD~s~--~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~  251 (310)
                         ..+.|++.  +++|+.|.|.  +.+.++--.+++.++-   -+.++|+|+|+||+|+...++   .-+++.+.+..-
T Consensus       239 qsITALAHLra--aVLYfmDLSe~CGySva~QvkLfhsIKp---LFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~  313 (620)
T KOG1490|consen  239 QIITALAHLRS--AVLYFMDLSEMCGYSVAAQVKLYHSIKP---LFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD  313 (620)
T ss_pred             HHHHHHHHhhh--hheeeeechhhhCCCHHHHHHHHHHhHH---HhcCCceEEEeecccccCccccCHHHHHHHHHHHhc
Confidence               23566665  6899999986  4444444445555553   336899999999999976432   233455555544


Q ss_pred             C---CCccccCccCCHHHHHHHHhhccC
Q 021615          252 G---CDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       252 g---~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      +   +...|+.+.+|+.++-...|..+.
T Consensus       314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LL  341 (620)
T KOG1490|consen  314 GNVKVVQTSCVQEEGVMDVRTTACEALL  341 (620)
T ss_pred             cCceEEEecccchhceeeHHHHHHHHHH
Confidence            4   456899999999998876665443

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.66  E-value=1.4e-15  Score=132.98  Aligned_cols=158  Identities=14%  Similarity=0.085  Sum_probs=103.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|++|||||||++++....... .+ .+|............  ....  ..+.+|||||..+...    +   ..
T Consensus        10 ~kv~liG~~g~GKTtLi~~~~~~~~~~-~~-~~t~~~~~~~~~~~~--~~~~--i~i~~~Dt~g~~~~~~----~---~~   76 (215)
T PTZ00132         10 FKLILVGDGGVGKTTFVKRHLTGEFEK-KY-IPTLGVEVHPLKFYT--NCGP--ICFNVWDTAGQEKFGG----L---RD   76 (215)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhCCCCC-CC-CCccceEEEEEEEEE--CCeE--EEEEEEECCCchhhhh----h---hH
Confidence            689999999999999998766443211 11 223222222221110  0111  2789999999865421    1   22


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCccccCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET  260 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa~~  260 (310)
                      .++..++++++|+|.++..++.....|...+....   .+.|+++|+||+|+.......+ .......  +.+.++|+++
T Consensus        77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~e~Sa~~  152 (215)
T PTZ00132         77 GYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVKDRQVKAR-QITFHRKKNLQYYDISAKS  152 (215)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCccccCCHH-HHHHHHHcCCEEEEEeCCC
Confidence            34557899999999999888888888888877553   3689999999999864321111 1222232  3456799999


Q ss_pred             cCCHHHHHHHHhhccCC
Q 021615          261 ELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       261 ~~gi~~l~~~l~~~~~~  277 (310)
                      +.|+++.|..++..+..
T Consensus       153 ~~~v~~~f~~ia~~l~~  169 (215)
T PTZ00132        153 NYNFEKPFLWLARRLTN  169 (215)
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999998876543

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.66  E-value=9e-16  Score=123.62  Aligned_cols=152  Identities=20%  Similarity=0.164  Sum_probs=96.5

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhh
Q 021615          107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR  186 (310)
Q Consensus       107 lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~  186 (310)
                      ++|++|+|||||+++|++..........|.............      ....+.+||+||+.+...       .....+.
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~~~-------~~~~~~~   67 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDG------KKVKLQIWDTAGQERFRS-------LRRLYYR   67 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECC------EEEEEEEEecCChHHHHh-------HHHHHhc
Confidence            589999999999999998765222222222222222222110      012789999999865422       2234567


Q ss_pred             hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHH----HHHHHHhcCCCccccCccC
Q 021615          187 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS----LTEEILKIGCDKVTSETEL  262 (310)
Q Consensus       187 ~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~----l~~~l~~~g~~~~sa~~~~  262 (310)
                      .+|++++|+|++.+........+...... .....+.|+++|+||+|+.........    .........+..+|+..+.
T Consensus        68 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  146 (157)
T cd00882          68 GADGIILVYDVTDRESFENVKEWLLLILI-NKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGE  146 (157)
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHH-hhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCC
Confidence            89999999999987766666554211111 112247999999999999765432222    1122223456668999999


Q ss_pred             CHHHHHHHHh
Q 021615          263 SSEDAVKSLS  272 (310)
Q Consensus       263 gi~~l~~~l~  272 (310)
                      |+.+++..+.
T Consensus       147 ~i~~~~~~l~  156 (157)
T cd00882         147 NVEELFEELA  156 (157)
T ss_pred             ChHHHHHHHh
Confidence            9999998864

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.65  E-value=3.7e-16  Score=139.72  Aligned_cols=162  Identities=29%  Similarity=0.239  Sum_probs=120.7

Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  175 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~  175 (310)
                      .++-...+.|++||++|+|||||+++|+++.....+..|.|++|+.-......       +..+.+.||-||+..  ++.
T Consensus       172 gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-------g~~vlltDTvGFisd--LP~  242 (410)
T KOG0410|consen  172 GREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-------GNFVLLTDTVGFISD--LPI  242 (410)
T ss_pred             ccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-------CcEEEEeechhhhhh--CcH
Confidence            34556778999999999999999999997776668899999998765544221       136899999999875  345


Q ss_pred             hHHHHH---HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh
Q 021615          176 GLGRNF---LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEARDRLQSLTEEILK  250 (310)
Q Consensus       176 ~l~~~~---~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~  250 (310)
                      .+..+|   +.++..+|++++|+|++.|...++.+.+...|...+-  ...-..++-|-||+|........       +.
T Consensus       243 ~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-------E~  315 (410)
T KOG0410|consen  243 QLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-------EK  315 (410)
T ss_pred             HHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-------cc
Confidence            666555   5667889999999999999988888888888876532  00112366788999986542110       22


Q ss_pred             cCCCccccCccCCHHHHHHHHhh
Q 021615          251 IGCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       251 ~g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      .+...+|+.+|+|++++...+-.
T Consensus       316 n~~v~isaltgdgl~el~~a~~~  338 (410)
T KOG0410|consen  316 NLDVGISALTGDGLEELLKAEET  338 (410)
T ss_pred             CCccccccccCccHHHHHHHHHH
Confidence            34566899999999999987644

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.65  E-value=4.7e-15  Score=127.85  Aligned_cols=141  Identities=21%  Similarity=0.223  Sum_probs=92.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC----------------CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG  166 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i----------------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG  166 (310)
                      .+|+++|.+++|||||+++|+......                ....++|.......+...        +..+.++||||
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------~~~i~~iDtPG   74 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--------NRHYAHVDCPG   74 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC--------CeEEEEEECcC
Confidence            469999999999999999998641100                113445554433333222        23789999999


Q ss_pred             CCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHH----
Q 021615          167 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL----  241 (310)
Q Consensus       167 ~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~----  241 (310)
                      +.+       +.......+..+|++++|+|+......++.+ ++..+..     .++| +++|+||+|+....+..    
T Consensus        75 ~~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~-~~~~~~~-----~~~~~iIvviNK~D~~~~~~~~~~~~  141 (195)
T cd01884          75 HAD-------YIKNMITGAAQMDGAILVVSATDGPMPQTRE-HLLLARQ-----VGVPYIVVFLNKADMVDDEELLELVE  141 (195)
T ss_pred             HHH-------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCcEEEEEeCCCCCCcHHHHHHHH
Confidence            854       3344566678899999999998755444433 3445554     3566 77899999997543322    


Q ss_pred             HHHHHHHHhcCC-------CccccCccCCH
Q 021615          242 QSLTEEILKIGC-------DKVTSETELSS  264 (310)
Q Consensus       242 ~~l~~~l~~~g~-------~~~sa~~~~gi  264 (310)
                      +++.+.+..+++       .++|+.+|.+.
T Consensus       142 ~~i~~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         142 MEVRELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence            345555555554       34788888874

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.65  E-value=3.1e-15  Score=129.60  Aligned_cols=124  Identities=16%  Similarity=0.065  Sum_probs=84.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeec--cceEeeCCCC-CCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP--NLGRLDGDPT-LGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~--~~~~v~~~~~-~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      .||+++|.++||||||++++++...... + ..|...  ....+.+... .....+  .+.+|||+|..++    ..+. 
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~-~-~~Tig~~~~~k~~~~~~~~~~~~~~--~l~IwDtaG~e~~----~~l~-   71 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGR-P-SWTVGCSVDVKHHTYKEGTPEEKTF--FVELWDVGGSESV----KSTR-   71 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCC-C-CcceeeeEEEEEEEEcCCCCCCcEE--EEEEEecCCchhH----HHHH-
Confidence            3799999999999999999998753322 1 222221  1112222110 011122  6899999999665    2222 


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC-----------------CCCCCCEEEEEeCCCCCCc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-----------------DYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~-----------------~~~~~p~ivv~NK~Dl~~~  237 (310)
                        ..+++.+|++++|+|.++..+++.+..|..++.....                 ...+.|+++|+||+|+.+.
T Consensus        72 --~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~  144 (202)
T cd04102          72 --AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE  144 (202)
T ss_pred             --HHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence              2345689999999999999999999999998875321                 1135899999999999754

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.64  E-value=3.4e-15  Score=148.21  Aligned_cols=151  Identities=19%  Similarity=0.111  Sum_probs=102.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .|+++|.+|+|||||+++|++.....   ...+++|.+.....+....        ..+.+|||||+.++       ...
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--------~~v~~iDtPGhe~f-------~~~   66 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--------YRLGFIDVPGHEKF-------ISN   66 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--------EEEEEEECCCHHHH-------HHH
Confidence            58999999999999999999854211   2234566655444444322        27899999998543       345


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHh---HHHHHHHHHHhc-----
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARD---RLQSLTEEILKI-----  251 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~---~~~~l~~~l~~~-----  251 (310)
                      +...+..+|++++|+|++++...+..+.+ ..+..     .+.| +++|+||+|+.+...   ..+++.+.+...     
T Consensus        67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl-~il~~-----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~  140 (581)
T TIGR00475        67 AIAGGGGIDAALLVVDADEGVMTQTGEHL-AVLDL-----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKN  140 (581)
T ss_pred             HHhhhccCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence            56667889999999999985444444333 23333     3577 999999999986432   123344444433     


Q ss_pred             -CCCccccCccCCHHHHHHHHhhcc
Q 021615          252 -GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       252 -g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                       .+.++|++++.|+.+++..+....
T Consensus       141 ~~ii~vSA~tG~GI~eL~~~L~~l~  165 (581)
T TIGR00475       141 AKIFKTSAKTGQGIGELKKELKNLL  165 (581)
T ss_pred             CcEEEEeCCCCCCchhHHHHHHHHH
Confidence             344589999999999998875543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.64  E-value=2.2e-16  Score=124.65  Aligned_cols=115  Identities=18%  Similarity=0.205  Sum_probs=74.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCC---C-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPD---I-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~---i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ||+|+|.+|||||||+++|.+....   . ......+.......+....        ..+.+||++|..+......    
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~d~~g~~~~~~~~~----   68 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDR--------QSLQFWDFGGQEEFYSQHQ----   68 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEE--------EEEEEEEESSSHCHHCTSH----
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCc--------eEEEEEecCccceeccccc----
Confidence            6999999999999999999988754   1 2222223222222222211        1478999999966533211    


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  233 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D  233 (310)
                         ..+..+|++++|+|.+++.+++.+..+...+........+.|+++|+||.|
T Consensus        69 ---~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   69 ---FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             ---HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             ---chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence               126689999999999998877776555444443321123599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.64  E-value=6e-16  Score=123.35  Aligned_cols=158  Identities=25%  Similarity=0.333  Sum_probs=108.8

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      .++.-..+.++|..|+|||||+|.+...+.  ..+...|...+...+.-..        ..+.+||.||+..+       
T Consensus        16 f~k~emel~lvGLq~sGKtt~Vn~ia~g~~--~edmiptvGfnmrk~tkgn--------vtiklwD~gGq~rf-------   78 (186)
T KOG0075|consen   16 FWKEEMELSLVGLQNSGKTTLVNVIARGQY--LEDMIPTVGFNMRKVTKGN--------VTIKLWDLGGQPRF-------   78 (186)
T ss_pred             HHHheeeEEEEeeccCCcceEEEEEeeccc--hhhhcccccceeEEeccCc--------eEEEEEecCCCccH-------
Confidence            455667799999999999999999876431  1122334333333332221        16899999999665       


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------h
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------K  250 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~  250 (310)
                      ...|.++.+.+++++||+|+++++..+..+.-++.| .+.+.+.++|+++++||.|+.++-.. ..+.+++.       +
T Consensus        79 rsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~L-L~k~~l~gip~LVLGnK~d~~~AL~~-~~li~rmgL~sitdRE  156 (186)
T KOG0075|consen   79 RSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDL-LDKPSLTGIPLLVLGNKIDLPGALSK-IALIERMGLSSITDRE  156 (186)
T ss_pred             HHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHH-hcchhhcCCcEEEecccccCcccccH-HHHHHHhCccccccce
Confidence            346677788999999999999976655433222222 23566778999999999999987543 33333332       2


Q ss_pred             cCCCccccCccCCHHHHHHHHhhc
Q 021615          251 IGCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       251 ~g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                      ..+..+|++...+++...++|...
T Consensus       157 vcC~siScke~~Nid~~~~Wli~h  180 (186)
T KOG0075|consen  157 VCCFSISCKEKVNIDITLDWLIEH  180 (186)
T ss_pred             EEEEEEEEcCCccHHHHHHHHHHH
Confidence            345558999999999999998554

>PLN00023 GTP-binding protein; Provisional

Probab=99.63  E-value=5.1e-15  Score=135.28  Aligned_cols=127  Identities=18%  Similarity=0.130  Sum_probs=85.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeec--cceEeeCCCC-------CCCccCCCceEEEeCCCCCcccc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP--NLGRLDGDPT-------LGAEKYSSEATLADLPGLIEGAH  172 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~--~~~~v~~~~~-------~~~~~~~~~~~i~DtPG~~~~~~  172 (310)
                      ..||+++|..|||||||+++|++...... + ..|+..  ....+.++..       .++....-.+.||||+|+..+..
T Consensus        21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~~-~-~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs   98 (334)
T PLN00023         21 QVRVLVVGDSGVGKSSLVHLIVKGSSIAR-P-PQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD   98 (334)
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCcccc-c-CCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence            36899999999999999999997753221 1 122211  1122222110       00000112689999999976522


Q ss_pred             CCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC----------CCCCCCEEEEEeCCCCCCc
Q 021615          173 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP----------DYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       173 ~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~----------~~~~~p~ivv~NK~Dl~~~  237 (310)
                          +   ...+++.+|++|+|+|+++..+++.+..|.+++..+..          .....|+++|+||+|+...
T Consensus        99 ----L---~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023         99 ----C---RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             ----h---hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence                2   22346789999999999999999999999999987531          1124799999999999653

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.63  E-value=5.8e-15  Score=128.11  Aligned_cols=121  Identities=24%  Similarity=0.315  Sum_probs=77.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      ++|+++|++|||||||+++|+..+... .  .++..++...+.....  .  ....+.+|||||+.+.       ...+.
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~~~~~-t--~~s~~~~~~~~~~~~~--~--~~~~~~l~D~pG~~~~-------~~~~~   66 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTGKYRS-T--VTSIEPNVATFILNSE--G--KGKKFRLVDVPGHPKL-------RDKLL   66 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCCC-c--cCcEeecceEEEeecC--C--CCceEEEEECCCCHHH-------HHHHH
Confidence            469999999999999999999875321 1  2222344444332110  0  1237899999998653       34556


Q ss_pred             HHhhhc-CEEEEecccCCC-CcHHHHHHHHHH-HHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          183 RHLRRT-RLLVHVIDAAAE-NPVNDYRTVKEE-LRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       183 ~~l~~~-d~il~VvD~s~~-~~~~~~~~~~~~-l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .+++.+ +++|||+|+++. ....+...++.. +........+.|+++|+||+|+..+
T Consensus        67 ~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          67 ETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             HHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            667788 999999999986 334333323222 2211111147899999999998764

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.62  E-value=6.9e-15  Score=126.84  Aligned_cols=162  Identities=17%  Similarity=0.103  Sum_probs=101.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCC--CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~--~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      +|+++|.||||||||+|+|++.+.....  .+.+|.....+......        ..+.++||||+.+.......+....
T Consensus         2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--------~~i~viDTPG~~d~~~~~~~~~~~i   73 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--------RRVNVIDTPGLFDTSVSPEQLSKEI   73 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--------eEEEEEECcCCCCccCChHHHHHHH
Confidence            6999999999999999999998755422  44566666555444322        3799999999987643222333332


Q ss_pred             ----HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-------HHHHHHHHHHh
Q 021615          182 ----LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-------RLQSLTEEILK  250 (310)
Q Consensus       182 ----~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-------~~~~l~~~l~~  250 (310)
                          .......|+++||+|+.. ...++ ....+.+.........+++++|+|++|.....+       ....+...+..
T Consensus        74 ~~~~~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~  151 (196)
T cd01852          74 VRCLSLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK  151 (196)
T ss_pred             HHHHHhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH
Confidence                233456899999999887 44444 334455544322222378899999999875321       11344444444


Q ss_pred             cCCC--c---c--ccCccCCHHHHHHHHhhcc
Q 021615          251 IGCD--K---V--TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       251 ~g~~--~---~--sa~~~~gi~~l~~~l~~~~  275 (310)
                      ++-.  .   .  ++..+.++.++++.+....
T Consensus       152 c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~  183 (196)
T cd01852         152 CGGRYVAFNNKAKGEEQEQQVKELLAKVESMV  183 (196)
T ss_pred             hCCeEEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence            4311  1   1  3566778888887765544

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.62  E-value=1.6e-14  Score=142.86  Aligned_cols=122  Identities=23%  Similarity=0.175  Sum_probs=77.6

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCC-------CccC---CCceEEEeCCCCCccc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG-------AEKY---SSEATLADLPGLIEGA  171 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~-------~~~~---~~~~~i~DtPG~~~~~  171 (310)
                      .+-|+++|.+|+|||||+|+|++.........++|.+.....+..+....       ...+   ...+.+|||||+..+.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            45699999999999999999998864333333344432222222111000       0000   0248999999986552


Q ss_pred             cCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          172 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       172 ~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                             ......++.+|++++|+|+++....++++.+ ..+..     .+.|+++++||+|+..
T Consensus        84 -------~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~~l~~-----~~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        84 -------NLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRM-----YKTPFVVAANKIDRIP  135 (590)
T ss_pred             -------HHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-HHHHH-----cCCCEEEEEECCCccc
Confidence                   2233456789999999999875555554433 23333     3689999999999964

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.62  E-value=3.9e-15  Score=143.20  Aligned_cols=147  Identities=18%  Similarity=0.142  Sum_probs=95.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCCCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTL  150 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~~~  150 (310)
                      ..+|+++|.+|+|||||+++|+.....+                               ...+++|++.....+....  
T Consensus         6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~--   83 (425)
T PRK12317          6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK--   83 (425)
T ss_pred             EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC--
Confidence            3579999999999999999998543222                               1145667766655554432  


Q ss_pred             CCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCC--CCcHHHHHHHHHHHHhcCCCCCCCCEEEE
Q 021615          151 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVV  228 (310)
Q Consensus       151 ~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~--~~~~~~~~~~~~~l~~~~~~~~~~p~ivv  228 (310)
                            ..+.+|||||+.++.       ......+..+|++++|+|+++  ....+..+ ....+..+    ...|+++|
T Consensus        84 ------~~i~liDtpG~~~~~-------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~-~~~~~~~~----~~~~iivv  145 (425)
T PRK12317         84 ------YYFTIVDCPGHRDFV-------KNMITGASQADAAVLVVAADDAGGVMPQTRE-HVFLARTL----GINQLIVA  145 (425)
T ss_pred             ------eEEEEEECCCcccch-------hhHhhchhcCCEEEEEEEcccCCCCCcchHH-HHHHHHHc----CCCeEEEE
Confidence                  279999999986542       223344678999999999987  33222222 22233332    12468999


Q ss_pred             EeCCCCCCc-HhH----HHHHHHHHHhcCC-------CccccCccCCHHHHH
Q 021615          229 LNKIDLPEA-RDR----LQSLTEEILKIGC-------DKVTSETELSSEDAV  268 (310)
Q Consensus       229 ~NK~Dl~~~-~~~----~~~l~~~l~~~g~-------~~~sa~~~~gi~~l~  268 (310)
                      +||+|+.+. .+.    .+++.+.+...++       ..+||+++.|+.++.
T Consensus       146 iNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        146 INKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             EEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            999999752 222    2344444544443       458999999998744

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.61  E-value=7.7e-15  Score=128.81  Aligned_cols=142  Identities=20%  Similarity=0.185  Sum_probs=89.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCCCCCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTLGA  152 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~~~~~  152 (310)
                      +|+++|.+++|||||+.+|+.....+                               ....++|++.....+....    
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~----   76 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK----   76 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC----
Confidence            48999999999999999996331111                               1123445554444443322    


Q ss_pred             ccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-------cHHHHHHHHHHHHhcCCCCCCCCE
Q 021615          153 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYLERPF  225 (310)
Q Consensus       153 ~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-------~~~~~~~~~~~l~~~~~~~~~~p~  225 (310)
                          .++.+|||||+.++       ...+...+..+|++++|+|+++..       ..+..+.+ ..+..+    ..+|+
T Consensus        77 ----~~i~liDtpG~~~~-------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~i  140 (219)
T cd01883          77 ----YRFTILDAPGHRDF-------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL----GVKQL  140 (219)
T ss_pred             ----eEEEEEECCChHHH-------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc----CCCeE
Confidence                37999999998543       234556677899999999998742       11222222 222222    23689


Q ss_pred             EEEEeCCCCCCc---HhHH----HHHHHHHHhcC-------CCccccCccCCHH
Q 021615          226 IVVLNKIDLPEA---RDRL----QSLTEEILKIG-------CDKVTSETELSSE  265 (310)
Q Consensus       226 ivv~NK~Dl~~~---~~~~----~~l~~~l~~~g-------~~~~sa~~~~gi~  265 (310)
                      ++|+||+|+...   ....    +.+.+.+...+       +..+||++|.|+.
T Consensus       141 iivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         141 IVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             EEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            999999999832   2222    33333445544       4458999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.60  E-value=2.8e-14  Score=142.10  Aligned_cols=159  Identities=23%  Similarity=0.248  Sum_probs=104.1

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC---------------CCCceeeccceEeeCCCCCCCccCCCceEEEeC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL  164 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~---------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~Dt  164 (310)
                      ..+.+|+++|..++|||||+.+|+.....+..               ..+.|.......+.+.. .+...  ..+++|||
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~-~dg~~--~~lnLiDT   81 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKA-KDGET--YILNLIDT   81 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEc-cCCCc--EEEEEEEC
Confidence            35678999999999999999999864322110               12333333333332210 01111  27899999


Q ss_pred             CCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--HHH
Q 021615          165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQ  242 (310)
Q Consensus       165 PG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~  242 (310)
                      ||+.++.       ..+.+++..||++++|+|+++....++...|.....      .+.|+++|+||+|+.....  ..+
T Consensus        82 PGh~dF~-------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~------~~lpiIvViNKiDl~~a~~~~v~~  148 (600)
T PRK05433         82 PGHVDFS-------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NDLEIIPVLNKIDLPAADPERVKQ  148 (600)
T ss_pred             CCcHHHH-------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEEEECCCCCcccHHHHHH
Confidence            9997752       345566789999999999998766666555543322      3689999999999975421  122


Q ss_pred             HHHHHHHhcC---CCccccCccCCHHHHHHHHhhcc
Q 021615          243 SLTEEILKIG---CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       243 ~l~~~l~~~g---~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ++.+.+. +.   +..+||+++.|+.++++.+....
T Consensus       149 ei~~~lg-~~~~~vi~iSAktG~GI~~Ll~~I~~~l  183 (600)
T PRK05433        149 EIEDVIG-IDASDAVLVSAKTGIGIEEVLEAIVERI  183 (600)
T ss_pred             HHHHHhC-CCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence            3332221 11   34689999999999999987655

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.60  E-value=8.2e-15  Score=132.47  Aligned_cols=125  Identities=22%  Similarity=0.183  Sum_probs=83.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC---C---CC------------CCCCceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKP---D---IA------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP  165 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~---~---i~------------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP  165 (310)
                      +|+++|.+|+|||||+++|+....   .   +.            ...++|+......+.+..        .++.++|||
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--------~~i~liDTP   72 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--------HRINIIDTP   72 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--------EEEEEEECC
Confidence            489999999999999999974221   1   11            122344444444443322        278999999


Q ss_pred             CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHH
Q 021615          166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQS  243 (310)
Q Consensus       166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~  243 (310)
                      |+.++       ...+.+.++.+|++++|+|+......++. .++..+..     .++|+++++||+|+....  ...+.
T Consensus        73 G~~df-------~~~~~~~l~~aD~ailVVDa~~g~~~~t~-~~~~~~~~-----~~~p~ivviNK~D~~~a~~~~~~~~  139 (270)
T cd01886          73 GHVDF-------TIEVERSLRVLDGAVAVFDAVAGVEPQTE-TVWRQADR-----YNVPRIAFVNKMDRTGADFFRVVEQ  139 (270)
T ss_pred             CcHHH-------HHHHHHHHHHcCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHH
Confidence            98654       23456778899999999999886544443 34455554     368999999999997532  23455


Q ss_pred             HHHHHH
Q 021615          244 LTEEIL  249 (310)
Q Consensus       244 l~~~l~  249 (310)
                      +.+.+.
T Consensus       140 l~~~l~  145 (270)
T cd01886         140 IREKLG  145 (270)
T ss_pred             HHHHhC
Confidence            555444

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.59  E-value=1.7e-14  Score=127.18  Aligned_cols=164  Identities=20%  Similarity=0.231  Sum_probs=112.8

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      +...+|.++|.+|+|||||+|+|+..+... +..+.+|..++.....++.        +.+++|||||+.++-..+....
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--------~~l~lwDtPG~gdg~~~D~~~r  108 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--------ENLVLWDTPGLGDGKDKDAEHR  108 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--------cceEEecCCCcccchhhhHHHH
Confidence            345578899999999999999999766443 4444444333322223322        2789999999998766556677


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc-------------------Hh
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-------------------RD  239 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~-------------------~~  239 (310)
                      ..+...+.+.|++++++|+.++...-+...+.+.+..-    .++++++++|.+|+...                   ++
T Consensus       109 ~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~----~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~  184 (296)
T COG3596         109 QLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG----LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE  184 (296)
T ss_pred             HHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc----cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH
Confidence            77888899999999999999987666666665555432    35899999999998642                   11


Q ss_pred             HHHHHHHHHHh-cCCCccccCccCCHHHHHHHHhhcc
Q 021615          240 RLQSLTEEILK-IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       240 ~~~~l~~~l~~-~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +.+.+.+.+.. .++...+...+-|++.+...+....
T Consensus       185 k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~l  221 (296)
T COG3596         185 KAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITAL  221 (296)
T ss_pred             HHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence            22233333332 2344456678889999888776544

>PRK09866 hypothetical protein; Provisional

Probab=99.59  E-value=7.7e-14  Score=136.08  Aligned_cols=113  Identities=22%  Similarity=0.308  Sum_probs=76.5

Q ss_pred             CceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                      ..++++||||+.....  ..+.....+.+..+|+|+||+|+.......+ ..+.+.+.....   ..|+++|+||+|+.+
T Consensus       230 ~QIIFVDTPGIhk~~~--~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K---~~PVILVVNKIDl~d  303 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQ--PHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQ---SVPLYVLVNKFDQQD  303 (741)
T ss_pred             CCEEEEECCCCCCccc--hHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCC---CCCEEEEEEcccCCC
Confidence            4678999999975421  2355555667899999999999987544444 345566665321   259999999999864


Q ss_pred             cHh-HHHHHHH----HHHhc-----CCCccccCccCCHHHHHHHHhhcc
Q 021615          237 ARD-RLQSLTE----EILKI-----GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       237 ~~~-~~~~l~~----~l~~~-----g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ..+ ..+.+.+    .+...     .+.++||..+.|++.++..+....
T Consensus       304 reeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~  352 (741)
T PRK09866        304 RNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNG  352 (741)
T ss_pred             cccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence            211 1222222    22221     345589999999999999987644

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=9e-15  Score=121.51  Aligned_cols=155  Identities=19%  Similarity=0.210  Sum_probs=107.0

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .-.+|+++|..||||||++..|--.+.-..   -.|+.-+...+++...        +|++||.-|+.+..       ..
T Consensus        16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~ykn~--------~f~vWDvGGq~k~R-------~l   77 (181)
T KOG0070|consen   16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEYKNI--------SFTVWDVGGQEKLR-------PL   77 (181)
T ss_pred             ceEEEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEEcce--------EEEEEecCCCcccc-------cc
Confidence            346799999999999999999976652211   2344444445555432        89999999996542       24


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cCC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGC  253 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g~  253 (310)
                      |..++..++++|||+|.++.+.....+.-+..+-. .+++...|+++.+||.|++++-. ..++.+.+.-       ..+
T Consensus        78 W~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~-~~~l~~~~llv~aNKqD~~~als-~~ei~~~L~l~~l~~~~w~i  155 (181)
T KOG0070|consen   78 WKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLA-EPELRNAPLLVFANKQDLPGALS-AAEITNKLGLHSLRSRNWHI  155 (181)
T ss_pred             hhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHc-CcccCCceEEEEechhhccccCC-HHHHHhHhhhhccCCCCcEE
Confidence            56677899999999999987665544322222222 12345799999999999987643 3444444431       124


Q ss_pred             CccccCccCCHHHHHHHHhhcc
Q 021615          254 DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ..+.|.+|+|+.+.++++...+
T Consensus       156 q~~~a~~G~GL~egl~wl~~~~  177 (181)
T KOG0070|consen  156 QSTCAISGEGLYEGLDWLSNNL  177 (181)
T ss_pred             eeccccccccHHHHHHHHHHHH
Confidence            4489999999999999987765

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.58  E-value=1.1e-14  Score=125.43  Aligned_cols=160  Identities=18%  Similarity=0.136  Sum_probs=110.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|+|||+|+.++...... ..|..|.-+.+...+..+    +..+  .+.|+||+|+.++..    +   -
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~-~~y~ptied~y~k~~~v~----~~~~--~l~ilDt~g~~~~~~----~---~   68 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFV-EDYDPTIEDSYRKELTVD----GEVC--MLEILDTAGQEEFSA----M---R   68 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccc-cccCCCccccceEEEEEC----CEEE--EEEEEcCCCcccChH----H---H
Confidence            357999999999999999999877522 223222222222222222    1112  678999999766632    1   2


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVT  257 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~s  257 (310)
                      ..++..+|++++|+++++..+++....+++.+.. .......|+++|+||+|+.....    ....+.. ...+.+.++|
T Consensus        69 ~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r-~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~-~~~~~f~E~S  146 (196)
T KOG0395|consen   69 DLYIRNGDGFLLVYSITDRSSFEEAKQLREQILR-VKGRDDVPIILVGNKCDLERERQVSEEEGKALAR-SWGCAFIETS  146 (196)
T ss_pred             HHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHH-hhCcCCCCEEEEEEcccchhccccCHHHHHHHHH-hcCCcEEEee
Confidence            2456789999999999999999999999998833 22334589999999999986322    2223322 2244577899


Q ss_pred             cCccCCHHHHHHHHhhccCC
Q 021615          258 SETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~~~  277 (310)
                      |+...+++++|..|......
T Consensus       147 ak~~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  147 AKLNYNVDEVFYELVREIRL  166 (196)
T ss_pred             ccCCcCHHHHHHHHHHHHHh
Confidence            99999999999998775543

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.57  E-value=4.5e-14  Score=125.37  Aligned_cols=125  Identities=24%  Similarity=0.315  Sum_probs=82.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC---CCC-CC--------------ceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI---ADY-PF--------------TTLMPNLGRLDGDPTLGAEKYSSEATLADLP  165 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i---~~~-~~--------------tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP  165 (310)
                      +|+++|.+|+|||||+++|+.....+   +.. ..              .|.......+...        +.++.+||||
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~--------~~~i~liDTP   72 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE--------DTKVNLIDTP   72 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC--------CEEEEEEeCC
Confidence            48999999999999999998653221   100 01              1111122222221        1279999999


Q ss_pred             CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc--HhHHHH
Q 021615          166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQS  243 (310)
Q Consensus       166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~  243 (310)
                      |+.++.       .....+++.+|++++|+|+++....+ .+.+++.+..     .++|+++++||+|+..+  .+..++
T Consensus        73 G~~~f~-------~~~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~-----~~~P~iivvNK~D~~~a~~~~~~~~  139 (237)
T cd04168          73 GHMDFI-------AEVERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK-----LNIPTIIFVNKIDRAGADLEKVYQE  139 (237)
T ss_pred             CccchH-------HHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH-----cCCCEEEEEECccccCCCHHHHHHH
Confidence            997652       23456778899999999999865443 3455566655     36899999999999854  344555


Q ss_pred             HHHHHH
Q 021615          244 LTEEIL  249 (310)
Q Consensus       244 l~~~l~  249 (310)
                      +.+.+.
T Consensus       140 i~~~~~  145 (237)
T cd04168         140 IKEKLS  145 (237)
T ss_pred             HHHHHC
Confidence            655554

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04169 RF3 RF3 subfamily

Probab=99.57  E-value=1.9e-14  Score=129.88  Aligned_cols=126  Identities=24%  Similarity=0.273  Sum_probs=79.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCC---CC-----CCce-e-------------eccceEeeCCCCCCCccCCCce
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIA---DY-----PFTT-L-------------MPNLGRLDGDPTLGAEKYSSEA  159 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~---~~-----~~tT-~-------------~~~~~~v~~~~~~~~~~~~~~~  159 (310)
                      ..+|+++|.+|+|||||+++|+.....+.   ..     ..+| .             ......+.+.        +.++
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~--------~~~i   73 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR--------DCVI   73 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC--------CEEE
Confidence            35799999999999999999985432211   00     0111 1             1111122221        2379


Q ss_pred             EEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-
Q 021615          160 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-  238 (310)
Q Consensus       160 ~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-  238 (310)
                      .+|||||+.++.       ......++.+|++++|+|+++....+. +.+++.+..     .++|+++++||+|+..+. 
T Consensus        74 ~liDTPG~~df~-------~~~~~~l~~aD~~IlVvda~~g~~~~~-~~i~~~~~~-----~~~P~iivvNK~D~~~a~~  140 (267)
T cd04169          74 NLLDTPGHEDFS-------EDTYRTLTAVDSAVMVIDAAKGVEPQT-RKLFEVCRL-----RGIPIITFINKLDREGRDP  140 (267)
T ss_pred             EEEECCCchHHH-------HHHHHHHHHCCEEEEEEECCCCccHHH-HHHHHHHHh-----cCCCEEEEEECCccCCCCH
Confidence            999999986542       234566789999999999987544332 344444443     368999999999987653 


Q ss_pred             -hHHHHHHHHH
Q 021615          239 -DRLQSLTEEI  248 (310)
Q Consensus       239 -~~~~~l~~~l  248 (310)
                       ...+++.+.+
T Consensus       141 ~~~~~~l~~~l  151 (267)
T cd04169         141 LELLDEIEEEL  151 (267)
T ss_pred             HHHHHHHHHHH
Confidence             2244454444

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK10218 GTP-binding protein; Provisional

Probab=99.57  E-value=5.5e-14  Score=139.56  Aligned_cols=155  Identities=14%  Similarity=0.153  Sum_probs=100.9

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-C---------------CCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-A---------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  163 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~---------------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D  163 (310)
                      ..+.+|+++|..++|||||+++|+.....+ .               ...+.|.......+.+..        .++.+||
T Consensus         3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~--------~~inliD   74 (607)
T PRK10218          3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND--------YRINIVD   74 (607)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCC--------EEEEEEE
Confidence            346789999999999999999999643211 1               122334443333443322        2799999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHH
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRL  241 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~  241 (310)
                      |||+.++.       ..+...++.+|++++|+|+.+....+... ++..+..     .+.|.++|+||+|+..+.  +..
T Consensus        75 TPG~~df~-------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~-~l~~a~~-----~gip~IVviNKiD~~~a~~~~vl  141 (607)
T PRK10218         75 TPGHADFG-------GEVERVMSMVDSVLLVVDAFDGPMPQTRF-VTKKAFA-----YGLKPIVVINKVDRPGARPDWVV  141 (607)
T ss_pred             CCCcchhH-------HHHHHHHHhCCEEEEEEecccCccHHHHH-HHHHHHH-----cCCCEEEEEECcCCCCCchhHHH
Confidence            99997762       23456678999999999998765444433 3344433     378999999999997542  334


Q ss_pred             HHHHHHHHhc---------CCCccccCccC----------CHHHHHHHHhhcc
Q 021615          242 QSLTEEILKI---------GCDKVTSETEL----------SSEDAVKSLSTEG  275 (310)
Q Consensus       242 ~~l~~~l~~~---------g~~~~sa~~~~----------gi~~l~~~l~~~~  275 (310)
                      +++.+.+..+         .+..+|+.++.          |+..+++.+....
T Consensus       142 ~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        142 DQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             HHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            5555554332         23447888887          4667776655443

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.57  E-value=1.4e-14  Score=131.10  Aligned_cols=151  Identities=21%  Similarity=0.208  Sum_probs=91.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC---CC-CC--------------CceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI---AD-YP--------------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLP  165 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i---~~-~~--------------~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP  165 (310)
                      +|+++|.+|+|||||+++|+.....+   +. ..              ..|.......+.+..        ..+++||||
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--------~~i~liDtP   72 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--------HKINLIDTP   72 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--------EEEEEEECc
Confidence            48999999999999999997543211   10 01              122222223333221        278999999


Q ss_pred             CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHH
Q 021615          166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQS  243 (310)
Q Consensus       166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~  243 (310)
                      |+.++       .......+..+|++++|+|++......... +++.+..     .++|.++|+||+|+....  +..+.
T Consensus        73 G~~~f-------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~~~-----~~~p~iivvNK~D~~~~~~~~~~~~  139 (268)
T cd04170          73 GYADF-------VGETRAALRAADAALVVVSAQSGVEVGTEK-LWEFADE-----AGIPRIIFINKMDRERADFDKTLAA  139 (268)
T ss_pred             CHHHH-------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECCccCCCCHHHHHHH
Confidence            98653       234556678999999999999866554433 3344544     368999999999998652  22334


Q ss_pred             HHHHHHhcCC-CccccCccCCHHHHHHHHhhcc
Q 021615          244 LTEEILKIGC-DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       244 l~~~l~~~g~-~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +.+.+....+ ..++..++.++..+++.+...+
T Consensus       140 l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~  172 (268)
T cd04170         140 LQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKA  172 (268)
T ss_pred             HHHHhCCCeEEEEecccCCCceeEEEEcccCEE
Confidence            4333321111 1145666666666655554433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.56  E-value=7.5e-14  Score=138.65  Aligned_cols=152  Identities=18%  Similarity=0.215  Sum_probs=101.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC------C----------CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI------A----------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG  166 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i------~----------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG  166 (310)
                      .+|+++|..++|||||+++|+.....+      .          ..-+.|.......+.+..        .++.+|||||
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--------~kinlIDTPG   73 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--------TKINIVDTPG   73 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--------EEEEEEECCC
Confidence            579999999999999999998642211      0          112344444333444332        2799999999


Q ss_pred             CCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHHH
Q 021615          167 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSL  244 (310)
Q Consensus       167 ~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~l  244 (310)
                      +.++       .....+.+..+|++++|+|+.+....+. ..++..+..     .+.|.++|+||+|+..+.  +..+++
T Consensus        74 h~DF-------~~ev~~~l~~aD~alLVVDa~~G~~~qT-~~~l~~a~~-----~~ip~IVviNKiD~~~a~~~~v~~ei  140 (594)
T TIGR01394        74 HADF-------GGEVERVLGMVDGVLLLVDASEGPMPQT-RFVLKKALE-----LGLKPIVVINKIDRPSARPDEVVDEV  140 (594)
T ss_pred             HHHH-------HHHHHHHHHhCCEEEEEEeCCCCCcHHH-HHHHHHHHH-----CCCCEEEEEECCCCCCcCHHHHHHHH
Confidence            9665       2344566789999999999987543333 445555554     368999999999997542  334555


Q ss_pred             HHHHHhc---------CCCccccCccC----------CHHHHHHHHhhcc
Q 021615          245 TEEILKI---------GCDKVTSETEL----------SSEDAVKSLSTEG  275 (310)
Q Consensus       245 ~~~l~~~---------g~~~~sa~~~~----------gi~~l~~~l~~~~  275 (310)
                      .+.+..+         .+..+|++.+.          |+..+|+.+....
T Consensus       141 ~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       141 FDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             HHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            5555422         23346888885          7888888876654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.56  E-value=1.2e-13  Score=137.14  Aligned_cols=121  Identities=21%  Similarity=0.134  Sum_probs=73.6

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC--CC-------ccC-CCceEEEeCCCCCccc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--GA-------EKY-SSEATLADLPGLIEGA  171 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~--~~-------~~~-~~~~~i~DtPG~~~~~  171 (310)
                      .+.|+++|.+|+|||||+++|.+...........|.+.....++.....  ..       ..+ ...+++|||||+.++.
T Consensus         6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~   85 (586)
T PRK04004          6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT   85 (586)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence            3569999999999999999998765332222223322111111111000  00       000 0137999999997652


Q ss_pred             cCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          172 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       172 ~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .       ...+.+..+|++++|+|+++....+.++.+ ..+..     .+.|+++++||+|+.
T Consensus        86 ~-------~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~~~~~-----~~vpiIvviNK~D~~  136 (586)
T PRK04004         86 N-------LRKRGGALADIAILVVDINEGFQPQTIEAI-NILKR-----RKTPFVVAANKIDRI  136 (586)
T ss_pred             H-------HHHHhHhhCCEEEEEEECCCCCCHhHHHHH-HHHHH-----cCCCEEEEEECcCCc
Confidence            2       223445689999999999875444444333 23333     378999999999985

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.56  E-value=8.7e-14  Score=138.80  Aligned_cols=152  Identities=16%  Similarity=0.112  Sum_probs=102.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      -|+++|.+++|||||+++|++.+...   ....+.|++.....+....       +..+.+|||||+.++       ...
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-------g~~i~~IDtPGhe~f-------i~~   67 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-------GRVLGFIDVPGHEKF-------LSN   67 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-------CcEEEEEECCCHHHH-------HHH
Confidence            48999999999999999999864221   2334666654333332111       125899999998543       344


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHh---HHHHHHHHHHhcC----
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARD---RLQSLTEEILKIG----  252 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g----  252 (310)
                      ....+..+|++++|+|+......++.+.+ ..+..     .+.| +++|+||+|+.+...   ..+++.+.+...+    
T Consensus        68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl-~il~~-----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~  141 (614)
T PRK10512         68 MLAGVGGIDHALLVVACDDGVMAQTREHL-AILQL-----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEA  141 (614)
T ss_pred             HHHHhhcCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            55667889999999999876544444433 33443     2456 579999999976422   2334445554443    


Q ss_pred             -CCccccCccCCHHHHHHHHhhcc
Q 021615          253 -CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       253 -~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                       +..+|+.++.|++++++.+....
T Consensus       142 ~ii~VSA~tG~gI~~L~~~L~~~~  165 (614)
T PRK10512        142 KLFVTAATEGRGIDALREHLLQLP  165 (614)
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhh
Confidence             44589999999999999987543

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.55  E-value=1e-13  Score=120.96  Aligned_cols=157  Identities=20%  Similarity=0.142  Sum_probs=104.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCC-ceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~-tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .+|+++|++|||||||+++|.+........+. .+..+.........       .-++.+|||+|+.+.       ...+
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-------~~~~~~~Dt~gq~~~-------~~~~   71 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-------NIKLQLWDTAGQEEY-------RSLR   71 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC-------EEEEEeecCCCHHHH-------HHHH
Confidence            78999999999999999999988644322211 11122211111110       115899999999765       2233


Q ss_pred             HHHhhhcCEEEEecccCC-CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHH-------------
Q 021615          182 LRHLRRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEE-------------  247 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~-~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~-------------  247 (310)
                      -.+...++++++|+|... ....+..+.|..++.....  ...|+++|+||+|+.........+...             
T Consensus        72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (219)
T COG1100          72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPK  149 (219)
T ss_pred             HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhH
Confidence            345578999999999998 5556666778888877543  358999999999998764321111110             


Q ss_pred             --HH---hcCCCccccC--ccCCHHHHHHHHhhcc
Q 021615          248 --IL---KIGCDKVTSE--TELSSEDAVKSLSTEG  275 (310)
Q Consensus       248 --l~---~~g~~~~sa~--~~~gi~~l~~~l~~~~  275 (310)
                        ..   ...+..+|++  ++.++.++|..+....
T Consensus       150 ~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~  184 (219)
T COG1100         150 AVLPEVANPALLETSAKSLTGPNVNELFKELLRKL  184 (219)
T ss_pred             HhhhhhcccceeEeecccCCCcCHHHHHHHHHHHH
Confidence              00   1225568899  9999999998876655

>CHL00071 tufA elongation factor Tu

Probab=99.55  E-value=1e-13  Score=132.55  Aligned_cols=140  Identities=20%  Similarity=0.197  Sum_probs=91.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC----------------CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP  165 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i----------------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP  165 (310)
                      ..+|+++|.+|+|||||+++|++....+                ....++|.+.....+...        +..+.++|||
T Consensus        12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--------~~~~~~iDtP   83 (409)
T CHL00071         12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE--------NRHYAHVDCP   83 (409)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC--------CeEEEEEECC
Confidence            4569999999999999999999752211                112455555443333221        1268999999


Q ss_pred             CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHH---
Q 021615          166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL---  241 (310)
Q Consensus       166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~---  241 (310)
                      |+.+       +.....+.+..+|++++|+|+......++.+.+ ..+..     .++| +|+++||+|+.+..+..   
T Consensus        84 Gh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~-~~~~~-----~g~~~iIvvvNK~D~~~~~~~~~~~  150 (409)
T CHL00071         84 GHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHI-LLAKQ-----VGVPNIVVFLNKEDQVDDEELLELV  150 (409)
T ss_pred             ChHH-------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCEEEEEEEccCCCCHHHHHHHH
Confidence            9743       334456667889999999999876544443333 44444     3678 77899999998654433   


Q ss_pred             -HHHHHHHHhcCC-------CccccCccC
Q 021615          242 -QSLTEEILKIGC-------DKVTSETEL  262 (310)
Q Consensus       242 -~~l~~~l~~~g~-------~~~sa~~~~  262 (310)
                       +++.+.+..+++       ..+|+.++.
T Consensus       151 ~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~  179 (409)
T CHL00071        151 ELEVRELLSKYDFPGDDIPIVSGSALLAL  179 (409)
T ss_pred             HHHHHHHHHHhCCCCCcceEEEcchhhcc
Confidence             345555555543       335766664

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.54  E-value=6.7e-14  Score=134.66  Aligned_cols=148  Identities=18%  Similarity=0.131  Sum_probs=92.6

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPT  149 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~~  149 (310)
                      ...+|+++|..++|||||+++|+.....+                               ....++|++.....+.... 
T Consensus         6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~-   84 (426)
T TIGR00483         6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK-   84 (426)
T ss_pred             ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC-
Confidence            34679999999999999999998532111                               0122445544444443322 


Q ss_pred             CCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcH---HHHHHHHHHHHhcCCCCCCCCEE
Q 021615          150 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV---NDYRTVKEELRMYNPDYLERPFI  226 (310)
Q Consensus       150 ~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~---~~~~~~~~~l~~~~~~~~~~p~i  226 (310)
                             ..+.+|||||+.++       ...+...+..+|++++|+|+++....   +..+ ....+..+    ...|++
T Consensus        85 -------~~i~iiDtpGh~~f-------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~-~~~~~~~~----~~~~iI  145 (426)
T TIGR00483        85 -------YEVTIVDCPGHRDF-------IKNMITGASQADAAVLVVAVGDGEFEVQPQTRE-HAFLARTL----GINQLI  145 (426)
T ss_pred             -------eEEEEEECCCHHHH-------HHHHHhhhhhCCEEEEEEECCCCCcccCCchHH-HHHHHHHc----CCCeEE
Confidence                   27899999998543       33444556789999999999886322   1111 11122221    135789


Q ss_pred             EEEeCCCCCCc-HhH----HHHHHHHHHhcC-------CCccccCccCCHHHHH
Q 021615          227 VVLNKIDLPEA-RDR----LQSLTEEILKIG-------CDKVTSETELSSEDAV  268 (310)
Q Consensus       227 vv~NK~Dl~~~-~~~----~~~l~~~l~~~g-------~~~~sa~~~~gi~~l~  268 (310)
                      +|+||+|+.+. .+.    .+++.+.+...+       +.++||+++.|+.+++
T Consensus       146 VviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       146 VAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             EEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            99999999742 222    234444555444       3458999999998643

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.54  E-value=1.2e-15  Score=119.72  Aligned_cols=156  Identities=17%  Similarity=0.189  Sum_probs=105.1

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhh
Q 021615          107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR  186 (310)
Q Consensus       107 lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~  186 (310)
                      ++|.+++|||.|+-++-.......++. .|.    |.-.....+.-.....++++|||+|++++.+    ...   .+.+
T Consensus         2 llgds~~gktcllir~kdgafl~~~fi-stv----gid~rnkli~~~~~kvklqiwdtagqerfrs----vt~---ayyr   69 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFI-STV----GIDFRNKLIDMDDKKVKLQIWDTAGQERFRS----VTH---AYYR   69 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCcee-eee----eeccccceeccCCcEEEEEEeeccchHHHhh----hhH---hhhc
Confidence            689999999999877764432111111 111    1110000011111123799999999987732    333   4456


Q ss_pred             hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCccccCccC
Q 021615          187 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTSETEL  262 (310)
Q Consensus       187 ~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~sa~~~~  262 (310)
                      .+|++++++|+.+..++++.+.|+.++++|..  ..+.+.+++||||+..+..    .-+.+.+. ..+.+.++|+++|-
T Consensus        70 da~allllydiankasfdn~~~wlsei~ey~k--~~v~l~llgnk~d~a~er~v~~ddg~kla~~-y~ipfmetsaktg~  146 (192)
T KOG0083|consen   70 DADALLLLYDIANKASFDNCQAWLSEIHEYAK--EAVALMLLGNKCDLAHERAVKRDDGEKLAEA-YGIPFMETSAKTGF  146 (192)
T ss_pred             ccceeeeeeecccchhHHHHHHHHHHHHHHHH--hhHhHhhhccccccchhhccccchHHHHHHH-HCCCceeccccccc
Confidence            89999999999999999999999999999965  4577889999999965321    22333322 24566679999999


Q ss_pred             CHHHHHHHHhhccCC
Q 021615          263 SSEDAVKSLSTEGGE  277 (310)
Q Consensus       263 gi~~l~~~l~~~~~~  277 (310)
                      +++-.|-.++.++..
T Consensus       147 nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen  147 NVDLAFLAIAEELKK  161 (192)
T ss_pred             cHhHHHHHHHHHHHH
Confidence            999999888776543

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.54  E-value=2.9e-13  Score=119.19  Aligned_cols=103  Identities=22%  Similarity=0.077  Sum_probs=69.0

Q ss_pred             CceEEEeCCCCCccccCCchHHHHHHHHhh--hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615          157 SEATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  234 (310)
Q Consensus       157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~--~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl  234 (310)
                      ..+.++||||+.++       .+.....+.  .+|++++|+|+..+....+.+ +...+..     .++|+++|+||+|+
T Consensus        84 ~~i~liDtpG~~~~-------~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~-~l~~l~~-----~~ip~ivvvNK~D~  150 (224)
T cd04165          84 KLVTFIDLAGHERY-------LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKE-HLGLALA-----LNIPVFVVVTKIDL  150 (224)
T ss_pred             cEEEEEECCCcHHH-------HHHHHHhhcccCCCEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCEEEEEECccc
Confidence            36899999998554       223344443  689999999998765544433 4444544     36899999999999


Q ss_pred             CCcHh---HHHHHHHHHHhc----------------------------CCCccccCccCCHHHHHHHHh
Q 021615          235 PEARD---RLQSLTEEILKI----------------------------GCDKVTSETELSSEDAVKSLS  272 (310)
Q Consensus       235 ~~~~~---~~~~l~~~l~~~----------------------------g~~~~sa~~~~gi~~l~~~l~  272 (310)
                      .+...   ..+++.+.+...                            .+..+|+.+|.|++++..+|.
T Consensus       151 ~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         151 APANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             cCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            75432   233344444321                            233369999999999998864

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.54  E-value=1.8e-13  Score=120.20  Aligned_cols=117  Identities=19%  Similarity=0.146  Sum_probs=74.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCC-CC---------------CCceeeccceEeeCCCC----CCCccCCCceEEEe
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIA-DY---------------PFTTLMPNLGRLDGDPT----LGAEKYSSEATLAD  163 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~-~~---------------~~tT~~~~~~~v~~~~~----~~~~~~~~~~~i~D  163 (310)
                      +|+++|..++|||||+.+|+.....+. ..               .+.|.......+.+...    ....  ...+.+||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~--~~~i~iiD   79 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGN--EYLINLID   79 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCC--ceEEEEEC
Confidence            699999999999999999986532221 00               11122111111111100    0011  22789999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      |||+.++.       ......++.+|++++|+|+.++...+....+. ....     .+.|+++|+||+|+.
T Consensus        80 TPG~~~f~-------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~~-----~~~p~ilviNKiD~~  138 (222)
T cd01885          80 SPGHVDFS-------SEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QALK-----ERVKPVLVINKIDRL  138 (222)
T ss_pred             CCCccccH-------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHHH-----cCCCEEEEEECCCcc
Confidence            99997753       24456778999999999999876665544333 3332     367999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.53  E-value=9.1e-14  Score=132.83  Aligned_cols=161  Identities=17%  Similarity=0.147  Sum_probs=97.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEee--------------CCCCCCCc----cCCCceEE
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLD--------------GDPTLGAE----KYSSEATL  161 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~--------------~~~~~~~~----~~~~~~~i  161 (310)
                      .+|+++|.+++|||||+++|++.....   ....+.|.........              .....+..    .....+.+
T Consensus         5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l   84 (406)
T TIGR03680         5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF   84 (406)
T ss_pred             EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence            469999999999999999998653111   1111223221111100              00000000    01237899


Q ss_pred             EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-
Q 021615          162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-  239 (310)
Q Consensus       162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-  239 (310)
                      |||||+.++       ...+...+..+|++++|+|++++. ..+..+.+ ..+...    ..+|+++|+||+|+.+... 
T Consensus        85 iDtPGh~~f-------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l-~~l~~~----gi~~iIVvvNK~Dl~~~~~~  152 (406)
T TIGR03680        85 VDAPGHETL-------MATMLSGAALMDGALLVIAANEPCPQPQTKEHL-MALEII----GIKNIVIVQNKIDLVSKEKA  152 (406)
T ss_pred             EECCCHHHH-------HHHHHHHHHHCCEEEEEEECCCCccccchHHHH-HHHHHc----CCCeEEEEEEccccCCHHHH
Confidence            999998543       345666677899999999999754 22222222 233332    1357899999999986432 


Q ss_pred             --HHHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhhcc
Q 021615          240 --RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       240 --~~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                        ..+++.+.+..     ..+.++|+.++.|++++++.|....
T Consensus       153 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       153 LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence              22344444432     2345589999999999999997654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.53  E-value=3.2e-14  Score=120.20  Aligned_cols=123  Identities=21%  Similarity=0.264  Sum_probs=68.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      ..|.|+|++|+|||+|+..|.......   ..|...++.... ...     .....+.++|+||+.+-.   ..+... +
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~---T~tS~e~n~~~~-~~~-----~~~~~~~lvD~PGH~rlr---~~~~~~-~   70 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVP---TVTSMENNIAYN-VNN-----SKGKKLRLVDIPGHPRLR---SKLLDE-L   70 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS------B---SSEEEECC-GSS-----TCGTCECEEEETT-HCCC---HHHHHH-H
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCC---eeccccCCceEE-eec-----CCCCEEEEEECCCcHHHH---HHHHHh-h
Confidence            469999999999999999999874211   122333333221 100     112379999999996642   112111 1


Q ss_pred             HHhhhcCEEEEecccCCC--CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615          183 RHLRRTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR  238 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~--~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~  238 (310)
                      .++..+.+||||+|++..  ...+..+.++..|..-.......|+++++||.|+..+.
T Consensus        71 ~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   71 KYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             HHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             hchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            247889999999998741  11223344444443222123468999999999998753

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.53  E-value=1.9e-13  Score=130.08  Aligned_cols=155  Identities=18%  Similarity=0.200  Sum_probs=99.0

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC----------------CCCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  163 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i----------------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D  163 (310)
                      |.-.+|+++|.+++|||||+++|++.....                ....++|.+.....+...        ...+.++|
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~--------~~~i~~iD   81 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE--------KRHYAHVD   81 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC--------CcEEEEEE
Confidence            345679999999999999999998632110                113445554432222211        23789999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHH-
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL-  241 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~-  241 (310)
                      |||+.++       .......+..+|++++|+|+......++.+.+ ..+..     .++| +++++||+|+.+.++.. 
T Consensus        82 tPGh~~f-------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~-~~~~~-----~g~~~~IvviNK~D~~~~~~~~~  148 (394)
T PRK12736         82 CPGHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLARQ-----VGVPYLVVFLNKVDLVDDEELLE  148 (394)
T ss_pred             CCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHH-HHHHH-----cCCCEEEEEEEecCCcchHHHHH
Confidence            9998543       33445666789999999999875444444433 34443     3677 67899999998543332 


Q ss_pred             ---HHHHHHHHhcCC-------CccccCccC--------CHHHHHHHHhhcc
Q 021615          242 ---QSLTEEILKIGC-------DKVTSETEL--------SSEDAVKSLSTEG  275 (310)
Q Consensus       242 ---~~l~~~l~~~g~-------~~~sa~~~~--------gi~~l~~~l~~~~  275 (310)
                         +++.+.+...++       ..+|+.++.        ++..+++.+....
T Consensus       149 ~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        149 LVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             HHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence               244555555553       447888873        5677777765543

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.53  E-value=8.5e-14  Score=124.26  Aligned_cols=130  Identities=18%  Similarity=0.188  Sum_probs=83.1

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC---
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL---  173 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~---  173 (310)
                      ++....+|+|+|.+|||||||+|+|++.... ++.+..+|............        .++.++||||+.+....   
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--------~~i~vIDTPGl~~~~~~~~~   98 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--------FKLNIIDTPGLLESVMDQRV   98 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--------eEEEEEECCCcCcchhhHHH
Confidence            5566689999999999999999999998754 36666667655544333221        27899999999876321   


Q ss_pred             CchHHHHHHHHhh--hcCEEEEecccCCCC-cHHHHHHHHHHHHh-cCCCCCCCCEEEEEeCCCCCCc
Q 021615          174 GKGLGRNFLRHLR--RTRLLVHVIDAAAEN-PVNDYRTVKEELRM-YNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       174 ~~~l~~~~~~~l~--~~d~il~VvD~s~~~-~~~~~~~~~~~l~~-~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .........+++.  ..|+++||..++... ...+ ..+.+.+.. +... ...++++|+||+|....
T Consensus        99 ~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~-i~~~~ivV~T~~d~~~p  164 (249)
T cd01853          99 NRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPS-IWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChh-hHhCEEEEEeCCccCCC
Confidence            1112222333343  468899987665422 2232 234445544 3322 24689999999998643

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=1.1e-14  Score=117.69  Aligned_cols=163  Identities=21%  Similarity=0.195  Sum_probs=108.0

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCC-cee----eccceEee-CCCCCCCccCCCceEEEeCCCCCccccC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPF-TTL----MPNLGRLD-GDPTLGAEKYSSEATLADLPGLIEGAHL  173 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~-tT~----~~~~~~v~-~~~~~~~~~~~~~~~i~DtPG~~~~~~~  173 (310)
                      ..+.+...+|.+|+||||++.+.+..+...   .| +|.    .+....+. ..+...+......+++|||+|++++   
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~---qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERF---   80 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNT---QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERF---   80 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCcccc---eeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHH---
Confidence            345567789999999999999988765211   01 111    11111111 1111122222336899999999887   


Q ss_pred             CchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHHHHHHH-HHHhc
Q 021615          174 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQSLTE-EILKI  251 (310)
Q Consensus       174 ~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~l~~-~l~~~  251 (310)
                       +++.-+|.+   .|=.+++++|.++..++-+...|+..|+.+..  .+.| +++++||+|+.+....-+.-.. ...++
T Consensus        81 -RSLTTAFfR---DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY--cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ky  154 (219)
T KOG0081|consen   81 -RSLTTAFFR---DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY--CENPDIVLCGNKADLEDQRVVSEDQAAALADKY  154 (219)
T ss_pred             -HHHHHHHHH---hhccceEEEeccchHHHHHHHHHHHHHHHhhc--cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHh
Confidence             455666655   67789999999999999999999999876532  2344 7889999999875443222222 22344


Q ss_pred             C--CCccccCccCCHHHHHHHHhhc
Q 021615          252 G--CDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       252 g--~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                      |  +.++||.++.+++..++.|...
T Consensus       155 glPYfETSA~tg~Nv~kave~Lldl  179 (219)
T KOG0081|consen  155 GLPYFETSACTGTNVEKAVELLLDL  179 (219)
T ss_pred             CCCeeeeccccCcCHHHHHHHHHHH
Confidence            4  5558999999999999887553

>cd04167 Snu114p Snu114p subfamily

Probab=99.52  E-value=2e-13  Score=119.31  Aligned_cols=117  Identities=21%  Similarity=0.242  Sum_probs=73.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCC----------C---------CCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIAD----------Y---------PFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  163 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~----------~---------~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D  163 (310)
                      .+|+++|.+++|||||+++|+.....+..          +         .+.|.......+.... ....  ...+.+||
T Consensus         1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~-~~~~--~~~i~iiD   77 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPD-SKGK--SYLFNIID   77 (213)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEc-CCCC--EEEEEEEE
Confidence            36999999999999999999875432210          0         1112111111111110 0011  12789999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      |||+.++.       ......+..+|++++|+|+++...... ..+...+..     .+.|+++|+||+|+.
T Consensus        78 tpG~~~f~-------~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~-----~~~p~iiviNK~D~~  136 (213)
T cd04167          78 TPGHVNFM-------DEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL-----EGLPIVLVINKIDRL  136 (213)
T ss_pred             CCCCcchH-------HHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECcccC
Confidence            99997652       234566779999999999987665543 233344432     358999999999985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=7.4e-14  Score=110.74  Aligned_cols=157  Identities=20%  Similarity=0.177  Sum_probs=107.4

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCce-e--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-L--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  175 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT-~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~  175 (310)
                      ...++|-.++|.-|+|||.|+..++..+.- ++.|.|- .  ...+..+.+.        ..+++||||+|+.++    +
T Consensus         8 ysyifkyiiigdmgvgkscllhqftekkfm-adcphtigvefgtriievsgq--------kiklqiwdtagqerf----r   74 (215)
T KOG0097|consen    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQ--------KIKLQIWDTAGQERF----R   74 (215)
T ss_pred             hhheEEEEEEccccccHHHHHHHHHHHHHh-hcCCcccceecceeEEEecCc--------EEEEEEeecccHHHH----H
Confidence            456788899999999999999999977521 2222211 0  1111122222        127999999999766    2


Q ss_pred             hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhcC--
Q 021615          176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--  252 (310)
Q Consensus       176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~g--  252 (310)
                      ...   .++.+.+-..++|+|+....+..++..|+...+..-.  .+..+++++||.|+....+. .++.++..++-|  
T Consensus        75 avt---rsyyrgaagalmvyditrrstynhlsswl~dar~ltn--pnt~i~lignkadle~qrdv~yeeak~faeengl~  149 (215)
T KOG0097|consen   75 AVT---RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLM  149 (215)
T ss_pred             HHH---HHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCC--CceEEEEecchhhhhhcccCcHHHHHHHHhhcCeE
Confidence            233   3445688899999999999888888888877665421  34567889999999875442 344444444444  


Q ss_pred             CCccccCccCCHHHHHHHHhh
Q 021615          253 CDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      +.+.|+++|.++++.|-..+.
T Consensus       150 fle~saktg~nvedafle~ak  170 (215)
T KOG0097|consen  150 FLEASAKTGQNVEDAFLETAK  170 (215)
T ss_pred             EEEecccccCcHHHHHHHHHH
Confidence            556899999999999866544

>PRK12735 elongation factor Tu; Reviewed

Probab=99.51  E-value=2.5e-13  Score=129.47  Aligned_cols=154  Identities=20%  Similarity=0.229  Sum_probs=95.8

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCC-----CC-----------CCCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKP-----DI-----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  163 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~-----~i-----------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D  163 (310)
                      +...+|+++|.+++|||||+++|++...     ..           ....++|.+.....+...        +..+.++|
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~--------~~~i~~iD   81 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA--------NRHYAHVD   81 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC--------CcEEEEEE
Confidence            3446799999999999999999986210     00           113345554333222221        12689999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCCcHhHH-
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARDRL-  241 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~-  241 (310)
                      |||+.+       +.....+.+..+|++++|+|+......+..+.+ ..+..     .++|.+ +++||+|+.+..+.. 
T Consensus        82 tPGh~~-------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l-~~~~~-----~gi~~iivvvNK~Dl~~~~~~~~  148 (396)
T PRK12735         82 CPGHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ-----VGVPYIVVFLNKCDMVDDEELLE  148 (396)
T ss_pred             CCCHHH-------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHH-HHHHH-----cCCCeEEEEEEecCCcchHHHHH
Confidence            999843       334455667789999999999875444433333 34443     367865 579999997543322 


Q ss_pred             ---HHHHHHHHhcCC-------CccccCccC----------CHHHHHHHHhhc
Q 021615          242 ---QSLTEEILKIGC-------DKVTSETEL----------SSEDAVKSLSTE  274 (310)
Q Consensus       242 ---~~l~~~l~~~g~-------~~~sa~~~~----------gi~~l~~~l~~~  274 (310)
                         .++.+.+..+++       ..+|+.++.          ++..+++.+...
T Consensus       149 ~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        149 LVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             HHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence               244445554443       447888873          566677666543

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.50  E-value=2.3e-13  Score=130.15  Aligned_cols=162  Identities=18%  Similarity=0.163  Sum_probs=99.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeCCC--------CC------C--C--ccCCCceE
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDP--------TL------G--A--EKYSSEAT  160 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~~~--------~~------~--~--~~~~~~~~  160 (310)
                      -.+|+++|..++|||||+.+|++.....   ....+.|............        .+      .  +  ......+.
T Consensus         9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   88 (411)
T PRK04000          9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS   88 (411)
T ss_pred             cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence            3579999999999999999997642111   1123445443221111100        00      0  0  00113789


Q ss_pred             EEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh
Q 021615          161 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD  239 (310)
Q Consensus       161 i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~  239 (310)
                      +|||||+.+       +...++..+..+|++++|+|++++. ..+..+.+ ..+...    ...|+++|+||+|+.+..+
T Consensus        89 liDtPG~~~-------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~~----~i~~iiVVlNK~Dl~~~~~  156 (411)
T PRK04000         89 FVDAPGHET-------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDII----GIKNIVIVQNKIDLVSKER  156 (411)
T ss_pred             EEECCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc----CCCcEEEEEEeeccccchh
Confidence            999999754       3445666677889999999999754 23333322 333332    1247899999999986433


Q ss_pred             H---HHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhhcc
Q 021615          240 R---LQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       240 ~---~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .   .+++.+.+..     ..+..+|++++.|++++++.+....
T Consensus       157 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        157 ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            2   2334443332     2345589999999999999987654

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.50  E-value=6.7e-13  Score=106.74  Aligned_cols=167  Identities=19%  Similarity=0.183  Sum_probs=119.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ...+|+++|.-++|||+++..|.-.+..+ .++..|--+...+.++.+.     .....+.+.||.|+..+.   ..+-+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~r-----garE~l~lyDTaGlq~~~---~eLpr   79 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDR-----GAREQLRLYDTAGLQGGQ---QELPR   79 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCC-----ChhheEEEeecccccCch---hhhhH
Confidence            34569999999999999999988655444 2332232344444444321     223478999999997652   22333


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHH---HhcCCCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI---LKIGCDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l---~~~g~~~~  256 (310)
                         .++.-+|++++|+|..++.+++..+.+..++..+.. ..++|+++++||+|+.+..+........+   ++..+.++
T Consensus        80 ---hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~Kd-KKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eV  155 (198)
T KOG3883|consen   80 ---HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKD-KKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEV  155 (198)
T ss_pred             ---hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccc-cccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEE
Confidence               235678999999999999999999999999998654 34799999999999976544333333333   35677889


Q ss_pred             ccCccCCHHHHHHHHhhccCCcc
Q 021615          257 TSETELSSEDAVKSLSTEGGEAD  279 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~~~~~  279 (310)
                      .+.+...+.+.|..|+...-...
T Consensus       156 ta~dR~sL~epf~~l~~rl~~pq  178 (198)
T KOG3883|consen  156 TAMDRPSLYEPFTYLASRLHQPQ  178 (198)
T ss_pred             EeccchhhhhHHHHHHHhccCCc
Confidence            99999999999999988775443

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=3.8e-13  Score=128.22  Aligned_cols=154  Identities=20%  Similarity=0.199  Sum_probs=116.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .|-|.++|.--.|||||+..+-+.........+.|.+.....+..+..     -...++++||||+.-+..+       -
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-----~~~~itFiDTPGHeAFt~m-------R   72 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-----KIPGITFIDTPGHEAFTAM-------R   72 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-----CCceEEEEcCCcHHHHHHH-------H
Confidence            466999999999999999999999887777888898776666665421     0137999999999655321       1


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCC-------
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD-------  254 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~-------  254 (310)
                      .+-..-||++++|||+.+....+..+.+ +.++.     .+.|+++++||+|+++..  .......+.+.|+.       
T Consensus        73 aRGa~vtDIaILVVa~dDGv~pQTiEAI-~hak~-----a~vP~iVAiNKiDk~~~n--p~~v~~el~~~gl~~E~~gg~  144 (509)
T COG0532          73 ARGASVTDIAILVVAADDGVMPQTIEAI-NHAKA-----AGVPIVVAINKIDKPEAN--PDKVKQELQEYGLVPEEWGGD  144 (509)
T ss_pred             hcCCccccEEEEEEEccCCcchhHHHHH-HHHHH-----CCCCEEEEEecccCCCCC--HHHHHHHHHHcCCCHhhcCCc
Confidence            2223568999999999998887777766 34554     489999999999999653  45556666655543       


Q ss_pred             ----ccccCccCCHHHHHHHHhhcc
Q 021615          255 ----KVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ----~~sa~~~~gi~~l~~~l~~~~  275 (310)
                          ++||++|.|+.+++..+...+
T Consensus       145 v~~VpvSA~tg~Gi~eLL~~ill~a  169 (509)
T COG0532         145 VIFVPVSAKTGEGIDELLELILLLA  169 (509)
T ss_pred             eEEEEeeccCCCCHHHHHHHHHHHH
Confidence                379999999999998865433

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.49  E-value=5.6e-13  Score=115.09  Aligned_cols=152  Identities=18%  Similarity=0.242  Sum_probs=86.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-CC----CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-AD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~----~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      .+|+++|.+|||||||+|+|++..... ..    ...+|...  ..+... .      ...+.+|||||+.+....    
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~-~------~~~l~l~DtpG~~~~~~~----   68 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHP-K------FPNVTLWDLPGIGSTAFP----   68 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecC-C------CCCceEEeCCCCCcccCC----
Confidence            469999999999999999999854211 11    00112111  111110 0      126899999999764221    


Q ss_pred             HHHHHHH--hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH------------hHHHH
Q 021615          178 GRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR------------DRLQS  243 (310)
Q Consensus       178 ~~~~~~~--l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~------------~~~~~  243 (310)
                      ...+++.  +..+|++++|.|..  ....+ ..+.+.+..+     ++|+++|+||+|+....            +..++
T Consensus        69 ~~~~l~~~~~~~~d~~l~v~~~~--~~~~d-~~~~~~l~~~-----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~  140 (197)
T cd04104          69 PDDYLEEMKFSEYDFFIIISSTR--FSSND-VKLAKAIQCM-----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE  140 (197)
T ss_pred             HHHHHHHhCccCcCEEEEEeCCC--CCHHH-HHHHHHHHHh-----CCCEEEEEecccchhhhhhccccccccHHHHHHH
Confidence            1222222  46789999885432  22222 3455666653     68999999999995321            12233


Q ss_pred             HHHHHH----hcCC-----CccccC--ccCCHHHHHHHHhhcc
Q 021615          244 LTEEIL----KIGC-----DKVTSE--TELSSEDAVKSLSTEG  275 (310)
Q Consensus       244 l~~~l~----~~g~-----~~~sa~--~~~gi~~l~~~l~~~~  275 (310)
                      +.+.+.    ..+.     ..+|+.  .+.++..+.+.+...+
T Consensus       141 i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l  183 (197)
T cd04104         141 IRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL  183 (197)
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence            333332    2122     225666  4677777777765554

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.49  E-value=1.3e-12  Score=108.62  Aligned_cols=154  Identities=18%  Similarity=0.180  Sum_probs=107.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-------CCCCC---ceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-------ADYPF---TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  170 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-------~~~~~---tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~  170 (310)
                      ...||+++|+.++||||++.+++...+-+       ..+-.   ||.....+.+..+..       ..+.++||||+.++
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-------~~v~LfgtPGq~RF   81 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-------TGVHLFGTPGQERF   81 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-------ceEEEecCCCcHHH
Confidence            45789999999999999999999876311       11222   566666666654431       27999999999765


Q ss_pred             ccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-
Q 021615          171 AHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-  249 (310)
Q Consensus       171 ~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-  249 (310)
                             ...|.-.++.+..+++++|.+.+..+ ....+.+.+...    ...|+++++||.|+.++.. .+.+.+.+. 
T Consensus        82 -------~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~----~~ip~vVa~NK~DL~~a~p-pe~i~e~l~~  148 (187)
T COG2229          82 -------KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR----NPIPVVVAINKQDLFDALP-PEKIREALKL  148 (187)
T ss_pred             -------HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc----cCCCEEEEeeccccCCCCC-HHHHHHHHHh
Confidence                   22333345789999999999998877 334455555542    1289999999999988643 344444443 


Q ss_pred             ---hcCCCccccCccCCHHHHHHHHhhc
Q 021615          250 ---KIGCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       250 ---~~g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                         .......++..+.|..+.+..|...
T Consensus       149 ~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         149 ELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ccCCCceeeeecccchhHHHHHHHHHhh
Confidence               3345557888899999988876543

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.3e-13  Score=113.05  Aligned_cols=160  Identities=22%  Similarity=0.217  Sum_probs=113.4

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCC-C----CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI-A----DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL  173 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~----~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~  173 (310)
                      -|.-+.|+|+|.-|||||||+.++-...... .    ..-.+|..-+.+++....        ..+.+||.-|+      
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~--------~~l~fwdlgGQ------   79 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCN--------APLSFWDLGGQ------   79 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeecc--------ceeEEEEcCCh------
Confidence            3455679999999999999999886443211 1    122345555666665442        37999999998      


Q ss_pred             CchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH----
Q 021615          174 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----  249 (310)
Q Consensus       174 ~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~----  249 (310)
                       +++...|..+...|++++||||+++++.++......+.+.. .....+.|+++.+||.|+.+..+ ..++...+.    
T Consensus        80 -e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~-~E~leg~p~L~lankqd~q~~~~-~~El~~~~~~~e~  156 (197)
T KOG0076|consen   80 -ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVE-NEKLEGAPVLVLANKQDLQNAME-AAELDGVFGLAEL  156 (197)
T ss_pred             -HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHH-HHHhcCCchhhhcchhhhhhhhh-HHHHHHHhhhhhh
Confidence             44555667777899999999999997777666555444433 22345899999999999987643 344444443    


Q ss_pred             ----hcCCCccccCccCCHHHHHHHHhhcc
Q 021615          250 ----KIGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       250 ----~~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                          .+.+.++|+.+|.|+++-..++....
T Consensus       157 ~~~rd~~~~pvSal~gegv~egi~w~v~~~  186 (197)
T KOG0076|consen  157 IPRRDNPFQPVSALTGEGVKEGIEWLVKKL  186 (197)
T ss_pred             cCCccCccccchhhhcccHHHHHHHHHHHH
Confidence                23566799999999999999876554

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.48  E-value=3.8e-13  Score=130.73  Aligned_cols=148  Identities=18%  Similarity=0.178  Sum_probs=90.6

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC-----------CCCc----------------------eeeccceEeeC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-----------YPFT----------------------TLMPNLGRLDG  146 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~-----------~~~t----------------------T~~~~~~~v~~  146 (310)
                      +...+|+++|.+++|||||+++|+.....+..           ..++                      |++.....+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            45678999999999999999999865432211           0122                      22222222221


Q ss_pred             CCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEE
Q 021615          147 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI  226 (310)
Q Consensus       147 ~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~i  226 (310)
                      .        ...+.++||||+.++       .......+..+|++++|+|+..+...++.+.+ ..+...    ..+|++
T Consensus       105 ~--------~~~i~~iDTPGh~~f-------~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l----g~~~iI  164 (474)
T PRK05124        105 E--------KRKFIIADTPGHEQY-------TRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL----GIKHLV  164 (474)
T ss_pred             C--------CcEEEEEECCCcHHH-------HHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh----CCCceE
Confidence            1        137899999997533       33444556889999999999875433222222 122222    125789


Q ss_pred             EEEeCCCCCCc-HhHHHHHHHHH----HhcC------CCccccCccCCHHHH
Q 021615          227 VVLNKIDLPEA-RDRLQSLTEEI----LKIG------CDKVTSETELSSEDA  267 (310)
Q Consensus       227 vv~NK~Dl~~~-~~~~~~l~~~l----~~~g------~~~~sa~~~~gi~~l  267 (310)
                      +|+||+|+.+. .+..+++.+.+    ..++      +.++|++++.|+..+
T Consensus       165 vvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        165 VAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             EEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            99999999743 23334444333    2333      445899999998764

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=5.1e-13  Score=105.91  Aligned_cols=153  Identities=18%  Similarity=0.229  Sum_probs=106.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      -.+|+.+|..+|||||++..|.-.++..   ...|..-++.++.+...        +|.+||.-|+..       +..-|
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~---~ipTvGFnvetVtykN~--------kfNvwdvGGqd~-------iRplW   78 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYKNV--------KFNVWDVGGQDK-------IRPLW   78 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCCCcc---cccccceeEEEEEeeee--------EEeeeeccCchh-------hhHHH
Confidence            3679999999999999999998765322   11233333444544432        799999999854       33345


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhc--CCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------hcC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY--NPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIG  252 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~--~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~~g  252 (310)
                      ..++..+.+++||+|+++.+..+.   .++||...  .+++...|+++.+||.|++++.. ..++.+.++       ...
T Consensus        79 rhYy~gtqglIFV~Dsa~~dr~ee---Ar~ELh~ii~~~em~~~~~LvlANkQDlp~A~~-pqei~d~leLe~~r~~~W~  154 (180)
T KOG0071|consen   79 RHYYTGTQGLIFVVDSADRDRIEE---ARNELHRIINDREMRDAIILILANKQDLPDAMK-PQEIQDKLELERIRDRNWY  154 (180)
T ss_pred             HhhccCCceEEEEEeccchhhHHH---HHHHHHHHhCCHhhhcceEEEEecCcccccccC-HHHHHHHhccccccCCccE
Confidence            556788999999999987655443   44555432  34556789999999999997632 455555554       123


Q ss_pred             CCccccCccCCHHHHHHHHhhccC
Q 021615          253 CDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      +.++++.+++|+.+-+.+|+....
T Consensus       155 vqp~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  155 VQPSCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             eeccccccchhHHHHHHHHHhhcc
Confidence            445899999999999999877653

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.47  E-value=4e-13  Score=135.25  Aligned_cols=147  Identities=17%  Similarity=0.149  Sum_probs=90.4

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC-----------CCCce----------------------eeccceEeeC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-----------YPFTT----------------------LMPNLGRLDG  146 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~-----------~~~tT----------------------~~~~~~~v~~  146 (310)
                      +...+|+++|.+|+|||||+++|+.....+..           ..++|                      ++.....+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            33457999999999999999999976533311           22332                      2222222221


Q ss_pred             CCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEE
Q 021615          147 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI  226 (310)
Q Consensus       147 ~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~i  226 (310)
                      .        +.++.++||||+.++       .......+..+|++++|+|+..+...++.+.+ ..+...    ..++++
T Consensus       102 ~--------~~~~~liDtPG~~~f-------~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~----~~~~ii  161 (632)
T PRK05506        102 P--------KRKFIVADTPGHEQY-------TRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIASLL----GIRHVV  161 (632)
T ss_pred             C--------CceEEEEECCChHHH-------HHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHHHHh----CCCeEE
Confidence            1        237899999998543       23344557789999999999875433322222 223332    125788


Q ss_pred             EEEeCCCCCC-cHhHHHHHH----HHHHhcCC-----CccccCccCCHHH
Q 021615          227 VVLNKIDLPE-ARDRLQSLT----EEILKIGC-----DKVTSETELSSED  266 (310)
Q Consensus       227 vv~NK~Dl~~-~~~~~~~l~----~~l~~~g~-----~~~sa~~~~gi~~  266 (310)
                      +|+||+|+.+ ..+..+++.    +.+..+++     ..+|++++.|+.+
T Consensus       162 vvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        162 LAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             EEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            9999999975 223333333    33344443     4589999999874

>PRK00049 elongation factor Tu; Reviewed

Probab=99.47  E-value=7.5e-13  Score=126.13  Aligned_cols=153  Identities=20%  Similarity=0.216  Sum_probs=96.7

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC----------------CCCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  163 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i----------------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D  163 (310)
                      +...+|+++|.+++|||||+++|++.....                ....++|++.....+...        +..+.++|
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------~~~i~~iD   81 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE--------KRHYAHVD   81 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC--------CeEEEEEE
Confidence            344679999999999999999999731110                113455665443333221        13689999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCCcHhHH-
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARDRL-  241 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~-  241 (310)
                      |||+.+       +.......+..+|++++|+|+..+...++.+ ++..+..     .+.|.+ +++||+|+.+..+.. 
T Consensus        82 tPG~~~-------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~-~~~~~~~-----~g~p~iiVvvNK~D~~~~~~~~~  148 (396)
T PRK00049         82 CPGHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQ-----VGVPYIVVFLNKCDMVDDEELLE  148 (396)
T ss_pred             CCCHHH-------HHHHHHhhhccCCEEEEEEECCCCCchHHHH-HHHHHHH-----cCCCEEEEEEeecCCcchHHHHH
Confidence            999853       2334445567899999999998765444433 3344544     367876 689999998543322 


Q ss_pred             ---HHHHHHHHhcCC-------CccccCccC----------CHHHHHHHHhh
Q 021615          242 ---QSLTEEILKIGC-------DKVTSETEL----------SSEDAVKSLST  273 (310)
Q Consensus       242 ---~~l~~~l~~~g~-------~~~sa~~~~----------gi~~l~~~l~~  273 (310)
                         .++.+.+..+++       ..+|+..+.          ++..+++.|..
T Consensus       149 ~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~  200 (396)
T PRK00049        149 LVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS  200 (396)
T ss_pred             HHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHh
Confidence               245555555544       336777654          45566666654

>PLN03127 Elongation factor Tu; Provisional

Probab=99.47  E-value=1.3e-12  Score=125.86  Aligned_cols=119  Identities=21%  Similarity=0.214  Sum_probs=78.7

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCC------C----------CCCCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKP------D----------IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  163 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~------~----------i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D  163 (310)
                      |...+|+++|..++|||||+++|++...      .          .....++|++.....++..        +.++.++|
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--------~~~i~~iD  130 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA--------KRHYAHVD  130 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC--------CeEEEEEE
Confidence            4456799999999999999999973310      0          0122566666544333322        12789999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHh
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARD  239 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~  239 (310)
                      |||+.++       .......+..+|++++|+|+......++.+ ....+..     .++| +++++||+|+.+..+
T Consensus       131 tPGh~~f-------~~~~~~g~~~aD~allVVda~~g~~~qt~e-~l~~~~~-----~gip~iIvviNKiDlv~~~~  194 (447)
T PLN03127        131 CPGHADY-------VKNMITGAAQMDGGILVVSAPDGPMPQTKE-HILLARQ-----VGVPSLVVFLNKVDVVDDEE  194 (447)
T ss_pred             CCCccch-------HHHHHHHHhhCCEEEEEEECCCCCchhHHH-HHHHHHH-----cCCCeEEEEEEeeccCCHHH
Confidence            9998543       233344556799999999998765444433 3334444     3678 578899999986433

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.47  E-value=8.6e-13  Score=125.73  Aligned_cols=142  Identities=20%  Similarity=0.220  Sum_probs=89.8

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCC----------C------CCCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPD----------I------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  163 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~----------i------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D  163 (310)
                      +.-.+|+++|..++|||||+++|++....          .      ....++|.+.....+...        +..+.+||
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~--------~~~~~liD   81 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE--------NRHYAHVD   81 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC--------CEEEEEEE
Confidence            34467999999999999999999843100          0      112456665433333211        13689999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCCcHhHH-
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARDRL-  241 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~-  241 (310)
                      |||+.++       ...+...+..+|++++|+|+......++.+.+ ..+..     .+.|.+ +|+||+|+.+..+.. 
T Consensus        82 tpGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l-~~~~~-----~gi~~iIvvvNK~Dl~~~~~~~~  148 (394)
T TIGR00485        82 CPGHADY-------VKNMITGAAQMDGAILVVSATDGPMPQTREHI-LLARQ-----VGVPYIVVFLNKCDMVDDEELLE  148 (394)
T ss_pred             CCchHHH-------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCEEEEEEEecccCCHHHHHH
Confidence            9999654       33455666789999999999875544444333 33443     356755 689999998654322 


Q ss_pred             ---HHHHHHHHhcC-------CCccccCccC
Q 021615          242 ---QSLTEEILKIG-------CDKVTSETEL  262 (310)
Q Consensus       242 ---~~l~~~l~~~g-------~~~~sa~~~~  262 (310)
                         +++.+.+...+       +..+|+.++.
T Consensus       149 ~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       149 LVEMEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence               24555555544       3346777664

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.46  E-value=7.1e-13  Score=134.61  Aligned_cols=117  Identities=23%  Similarity=0.196  Sum_probs=82.1

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC------CC------------CCCceeeccceEeeCCCCCCCccCCCceEE
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI------AD------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL  161 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i------~~------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i  161 (310)
                      ..+.+|+++|.+|+|||||+++|+.....+      .+            ..++|+......+.+..        .++.+
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--------~~i~l   79 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--------HRINI   79 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--------eEEEE
Confidence            456789999999999999999997532211      11            23445554444444332        27999


Q ss_pred             EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      |||||+.++.       ......++.+|++++|+|+.+....++.. ++..+..     .++|+++|+||+|+..+
T Consensus        80 iDTPG~~~~~-------~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~-----~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        80 IDTPGHVDFT-------VEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR-----YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             EECCCCcchh-------HHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH-----cCCCEEEEEECCCCCCC
Confidence            9999997652       13456678899999999998866555443 4444544     36899999999999864

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=1.2e-12  Score=124.40  Aligned_cols=155  Identities=20%  Similarity=0.176  Sum_probs=117.4

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      ..++.|-|-++|.-.-|||||+.+|-+.........+.|.+.-...+....       +.++++.||||+..+.      
T Consensus       149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-------G~~iTFLDTPGHaAF~------  215 (683)
T KOG1145|consen  149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-------GKSITFLDTPGHAAFS------  215 (683)
T ss_pred             cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-------CCEEEEecCCcHHHHH------
Confidence            345678899999999999999999999987777788888876666665442       2489999999995442      


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC----
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC----  253 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~----  253 (310)
                       ..-.+-..-+|++++||.+.+....+..+.+.. .+.     .+.|+++.+||||.+++.  .+...+.|...|+    
T Consensus       216 -aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkh-Ak~-----A~VpiVvAinKiDkp~a~--pekv~~eL~~~gi~~E~  286 (683)
T KOG1145|consen  216 -AMRARGANVTDIVVLVVAADDGVMPQTLEAIKH-AKS-----ANVPIVVAINKIDKPGAN--PEKVKRELLSQGIVVED  286 (683)
T ss_pred             -HHHhccCccccEEEEEEEccCCccHhHHHHHHH-HHh-----cCCCEEEEEeccCCCCCC--HHHHHHHHHHcCccHHH
Confidence             222334456899999999999888777766643 332     589999999999998764  4556666655443    


Q ss_pred             -------CccccCccCCHHHHHHHHhhc
Q 021615          254 -------DKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       254 -------~~~sa~~~~gi~~l~~~l~~~  274 (310)
                             .++||++|+|+..+-+.+...
T Consensus       287 ~GGdVQvipiSAl~g~nl~~L~eaill~  314 (683)
T KOG1145|consen  287 LGGDVQVIPISALTGENLDLLEEAILLL  314 (683)
T ss_pred             cCCceeEEEeecccCCChHHHHHHHHHH
Confidence                   348999999999999876543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.45  E-value=1.1e-12  Score=125.30  Aligned_cols=143  Identities=19%  Similarity=0.190  Sum_probs=88.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCC---------------------------------CCCceeeccceEeeCCCCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIAD---------------------------------YPFTTLMPNLGRLDGDPTL  150 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~---------------------------------~~~tT~~~~~~~v~~~~~~  150 (310)
                      +|+++|..++|||||+++|+.....+..                                 .-+.|++.....+...   
T Consensus         2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~---   78 (406)
T TIGR02034         2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD---   78 (406)
T ss_pred             eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence            6999999999999999999754322210                                 0112233222222221   


Q ss_pred             CCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 021615          151 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN  230 (310)
Q Consensus       151 ~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~N  230 (310)
                           +.++.++||||+.++       .......+..+|++++|+|+..+...++.+.+ ..+..+    ...++++|+|
T Consensus        79 -----~~~~~liDtPGh~~f-------~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~----~~~~iivviN  141 (406)
T TIGR02034        79 -----KRKFIVADTPGHEQY-------TRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLL----GIRHVVLAVN  141 (406)
T ss_pred             -----CeEEEEEeCCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHc----CCCcEEEEEE
Confidence                 237899999998543       33344567799999999999875444333322 233332    1246889999


Q ss_pred             CCCCCCcH-hHHHHHHHH----HHhcC-----CCccccCccCCHHH
Q 021615          231 KIDLPEAR-DRLQSLTEE----ILKIG-----CDKVTSETELSSED  266 (310)
Q Consensus       231 K~Dl~~~~-~~~~~l~~~----l~~~g-----~~~~sa~~~~gi~~  266 (310)
                      |+|+.+.. +..+.+.+.    +...+     +.++|+.+|.|+.+
T Consensus       142 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       142 KMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             ecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            99997532 233333333    33444     34589999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.45  E-value=6.1e-13  Score=120.96  Aligned_cols=128  Identities=20%  Similarity=0.181  Sum_probs=78.1

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      ....+|+++|.+|+||||++|+|++.+... +.+..+|..+........        +.++.++||||+.+....+....
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--------G~~l~VIDTPGL~d~~~~~e~~~  107 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--------GFTLNIIDTPGLIEGGYINDQAV  107 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--------CeEEEEEECCCCCchHHHHHHHH
Confidence            345789999999999999999999988643 555555554443332222        12799999999987632222211


Q ss_pred             HHHHHHh--hhcCEEEEecccCCC-CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          179 RNFLRHL--RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       179 ~~~~~~l--~~~d~il~VvD~s~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                      .....++  ...|+++||.+.+.. ....+ ..+.+.+..........++++|+|++|...
T Consensus       108 ~~ik~~l~~~g~DvVLyV~rLD~~R~~~~D-kqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       108 NIIKRFLLGKTIDVLLYVDRLDAYRVDTLD-GQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             HHHHHHhhcCCCCEEEEEeccCcccCCHHH-HHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence            1111112  258999999554432 22222 223344443322223478999999999763

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.43  E-value=5.1e-13  Score=117.59  Aligned_cols=159  Identities=18%  Similarity=0.167  Sum_probs=94.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      ||+++|+.++||||+.+.+++.-+ .-..+...|..+....+.....       -.+.+||+||+......  .+...-.
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-------~~l~iwD~pGq~~~~~~--~~~~~~~   71 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-------LPLNIWDCPGQDDFMEN--YFNSQRE   71 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-------CEEEEEEE-SSCSTTHT--THTCCHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-------cEEEEEEcCCccccccc--cccccHH
Confidence            699999999999999999997753 3355666777766666643322       17899999999865332  1111112


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHH---HHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------HHHHHHHHHhcC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKE---ELRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILKIG  252 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~---~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------~~~l~~~l~~~g  252 (310)
                      .-++.++++|||+|+.+.+..+++..+..   .+.++.+   +..+.|+++|+|+...+.+       .+.+.+.+...+
T Consensus        72 ~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp---~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~  148 (232)
T PF04670_consen   72 EIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP---NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLG  148 (232)
T ss_dssp             HHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST---T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence            23578999999999996555555554444   4455554   6789999999999875432       234444445444


Q ss_pred             -----CCccccCccCCHHHHHHHHhhcc
Q 021615          253 -----CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       253 -----~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                           +..+|..+ ..+.+++..+...+
T Consensus       149 ~~~~~~~~TSI~D-~Sly~A~S~Ivq~L  175 (232)
T PF04670_consen  149 IEDITFFLTSIWD-ESLYEAWSKIVQKL  175 (232)
T ss_dssp             -TSEEEEEE-TTS-THHHHHHHHHHHTT
T ss_pred             ccceEEEeccCcC-cHHHHHHHHHHHHH
Confidence                 33356666 36666666655544

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.43  E-value=7.8e-13  Score=110.68  Aligned_cols=120  Identities=25%  Similarity=0.249  Sum_probs=75.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCC---------------------------------
Q 021615          105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---------------------------------  151 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~---------------------------------  151 (310)
                      |+++|..++|||||+|+|+|.+........+|..+..-.........                                 
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE   80 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence            78999999999999999999874432222333322222211000000                                 


Q ss_pred             ---------------CccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhc
Q 021615          152 ---------------AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY  216 (310)
Q Consensus       152 ---------------~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~  216 (310)
                                     .......+.|+||||+.+.......   .+.+++..+|+++||+++.......+...+.+.+...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~---~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~  157 (168)
T PF00350_consen   81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTE---ITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD  157 (168)
T ss_dssp             TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSH---HHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT
T ss_pred             ccccccccceeEEeeccccccceEEEeCCccccchhhhHH---HHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC
Confidence                           0000236899999999775443343   3445567999999999999876666667676666542


Q ss_pred             CCCCCCCCEEEEEeCC
Q 021615          217 NPDYLERPFIVVLNKI  232 (310)
Q Consensus       217 ~~~~~~~p~ivv~NK~  232 (310)
                           ...+++|.||+
T Consensus       158 -----~~~~i~V~nk~  168 (168)
T PF00350_consen  158 -----KSRTIFVLNKA  168 (168)
T ss_dssp             -----CSSEEEEEE-G
T ss_pred             -----CCeEEEEEcCC
Confidence                 34589999995

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd01850 CDC_Septin CDC/Septin

Probab=99.43  E-value=2.7e-12  Score=116.54  Aligned_cols=140  Identities=19%  Similarity=0.208  Sum_probs=81.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCC---------CCCce-eeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIAD---------YPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH  172 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~---------~~~tT-~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~  172 (310)
                      ++|+++|.+|+|||||+|+|++.......         ...|+ .......+..+.    .  .-++.+|||||+.+...
T Consensus         5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g----~--~~~l~iiDTpGfgd~~~   78 (276)
T cd01850           5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENG----V--KLKLTVIDTPGFGDNIN   78 (276)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECC----E--EEEEEEEecCCcccccc
Confidence            57999999999999999999988643321         22222 222222222211    1  12689999999976533


Q ss_pred             CCc-------hHHHHHHHHh--------------hhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 021615          173 LGK-------GLGRNFLRHL--------------RRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLN  230 (310)
Q Consensus       173 ~~~-------~l~~~~~~~l--------------~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~N  230 (310)
                      ...       .+..+|..++              .++|+++|+++.+... ...+++ +.+.+..      .+|+++|+|
T Consensus        79 ~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~-~lk~l~~------~v~vi~Vin  151 (276)
T cd01850          79 NSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE-FMKRLSK------RVNIIPVIA  151 (276)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH-HHHHHhc------cCCEEEEEE
Confidence            211       1111222211              1478999999987532 223333 3344442      589999999


Q ss_pred             CCCCCCcHh---HHHHHHHHHHhcCCCc
Q 021615          231 KIDLPEARD---RLQSLTEEILKIGCDK  255 (310)
Q Consensus       231 K~Dl~~~~~---~~~~l~~~l~~~g~~~  255 (310)
                      |+|+....+   ....+.+.+...++..
T Consensus       152 K~D~l~~~e~~~~k~~i~~~l~~~~i~~  179 (276)
T cd01850         152 KADTLTPEELKEFKQRIMEDIEEHNIKI  179 (276)
T ss_pred             CCCcCCHHHHHHHHHHHHHHHHHcCCce
Confidence            999976433   2334445555555443

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.43  E-value=8.8e-14  Score=114.56  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=110.9

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  175 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~  175 (310)
                      .+...+|++++|..++||||++.+++..-.. .+|. .|+  +-....+...    ..  ..++.+|||+|+.++.    
T Consensus        16 d~e~aiK~vivGng~VGKssmiqryCkgifT-kdyk-ktIgvdflerqi~v~----~E--dvr~mlWdtagqeEfD----   83 (246)
T KOG4252|consen   16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFT-KDYK-KTIGVDFLERQIKVL----IE--DVRSMLWDTAGQEEFD----   83 (246)
T ss_pred             hhhhhEEEEEECCCccchHHHHHHHhccccc-cccc-cccchhhhhHHHHhh----HH--HHHHHHHHhccchhHH----
Confidence            3455678999999999999999999954311 1110 011  0000001100    00  1267899999998773    


Q ss_pred             hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhc
Q 021615          176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKI  251 (310)
Q Consensus       176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~  251 (310)
                      .+..   .+.+.|.+.++|++.++..+++....|.+++..-.   .++|.++|-||+|+.+...    ..+.+.+.+ ..
T Consensus        84 aItk---Ayyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~---~~IPtV~vqNKIDlveds~~~~~evE~lak~l-~~  156 (246)
T KOG4252|consen   84 AITK---AYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET---ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL-HK  156 (246)
T ss_pred             HHHH---HHhccccceEEEEecccHHHHHHHHHHHHHHHHHh---ccCCeEEeeccchhhHhhhcchHHHHHHHHHh-hh
Confidence            2333   44568999999999999999999999999887633   4799999999999986432    234444333 35


Q ss_pred             CCCccccCccCCHHHHHHHHhhccC
Q 021615          252 GCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       252 g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      .+..+|.+...++..+|.+|++...
T Consensus       157 RlyRtSvked~NV~~vF~YLaeK~~  181 (246)
T KOG4252|consen  157 RLYRTSVKEDFNVMHVFAYLAEKLT  181 (246)
T ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHH
Confidence            6778999999999999999987553

>PLN03126 Elongation factor Tu; Provisional

Probab=99.43  E-value=1.9e-12  Score=125.52  Aligned_cols=133  Identities=19%  Similarity=0.220  Sum_probs=85.9

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC----------------CCCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  163 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i----------------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D  163 (310)
                      +...+|+++|.+++|||||+++|++....+                ....+.|.+.....+...        +..+.++|
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--------~~~i~liD  150 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--------NRHYAHVD  150 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--------CcEEEEEE
Confidence            445679999999999999999999632211                112233443322223221        23789999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHHH
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ  242 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~  242 (310)
                      |||+.++       .......+..+|++++|+|+......+..+.+ ..+..     .++| +++++||+|+.+.++..+
T Consensus       151 tPGh~~f-------~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~-~~~~~-----~gi~~iIvvvNK~Dl~~~~~~~~  217 (478)
T PLN03126        151 CPGHADY-------VKNMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQ-----VGVPNMVVFLNKQDQVDDEELLE  217 (478)
T ss_pred             CCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEecccccCHHHHHH
Confidence            9998653       33445667789999999999876555443433 34444     3677 778999999986443333


Q ss_pred             ----HHHHHHHhcCC
Q 021615          243 ----SLTEEILKIGC  253 (310)
Q Consensus       243 ----~l~~~l~~~g~  253 (310)
                          ++.+.+..+++
T Consensus       218 ~i~~~i~~~l~~~g~  232 (478)
T PLN03126        218 LVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHHHHhcCC
Confidence                45555555554

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.42  E-value=2.8e-13  Score=115.23  Aligned_cols=160  Identities=18%  Similarity=0.168  Sum_probs=113.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..|+++||..++|||+|+..++.... ...|..|-.+-....+..+.   +..  ..+.+|||+|+.+.....     - 
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~f-p~~yvPTVFdnys~~v~V~d---g~~--v~L~LwDTAGqedYDrlR-----p-   71 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAF-PEEYVPTVFDNYSANVTVDD---GKP--VELGLWDTAGQEDYDRLR-----P-   71 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcC-cccccCeEEccceEEEEecC---CCE--EEEeeeecCCCccccccc-----c-
Confidence            35799999999999999998886631 12222222222223333320   111  268999999999874321     1 


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----------------hHHHHH
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRLQSL  244 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----------------~~~~~l  244 (310)
                      + .+..+|+++++++..++.++++. ..|..|+..+.+   +.|+|+|++|.|+.+..                ++..++
T Consensus        72 l-sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp---~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~l  147 (198)
T KOG0393|consen   72 L-SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP---NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLEL  147 (198)
T ss_pred             c-CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC---CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHH
Confidence            1 35688999999999999998875 778889999874   89999999999998532                223455


Q ss_pred             HHHHHhcCCCccccCccCCHHHHHHHHhhccCC
Q 021615          245 TEEILKIGCDKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       245 ~~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      .+.+....+.++|+.+..|+.++|+.....+..
T Consensus       148 A~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~  180 (198)
T KOG0393|consen  148 AKEIGAVKYLECSALTQKGVKEVFDEAIRAALR  180 (198)
T ss_pred             HHHhCcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence            555555678889999999999999887665544

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.42  E-value=5.4e-13  Score=105.92  Aligned_cols=154  Identities=21%  Similarity=0.263  Sum_probs=104.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      -.+|+++|..|||||||+..|.+.++.- .+    |...+...+.++..     +  .+++||+-|+       +++...
T Consensus        17 EirilllGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g~-----f--~LnvwDiGGq-------r~IRpy   78 (185)
T KOG0074|consen   17 EIRILLLGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDGT-----F--HLNVWDIGGQ-------RGIRPY   78 (185)
T ss_pred             eEEEEEEecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecCc-----E--EEEEEecCCc-------cccchh
Confidence            3569999999999999999999988542 22    22222334444432     1  7899999998       445556


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------hcCC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGC  253 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~~g~  253 (310)
                      |..++++.|.++||+|..+...++.+..-+-||.. .......|+++..||.|++.+.. .+++...+.       ...+
T Consensus        79 WsNYyenvd~lIyVIDS~D~krfeE~~~el~ELle-eeKl~~vpvlIfankQdlltaa~-~eeia~klnl~~lrdRswhI  156 (185)
T KOG0074|consen   79 WSNYYENVDGLIYVIDSTDEKRFEEISEELVELLE-EEKLAEVPVLIFANKQDLLTAAK-VEEIALKLNLAGLRDRSWHI  156 (185)
T ss_pred             hhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhh-hhhhhccceeehhhhhHHHhhcc-hHHHHHhcchhhhhhceEEe
Confidence            66778899999999998776655544332223221 12235789999999999986532 233333322       3346


Q ss_pred             CccccCccCCHHHHHHHHhhcc
Q 021615          254 DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ..+|+....|+.+-..+++.+.
T Consensus       157 q~csals~eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  157 QECSALSLEGSTDGSDWVQSNP  178 (185)
T ss_pred             eeCccccccCccCcchhhhcCC
Confidence            6689999999988888876554

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.8e-12  Score=123.28  Aligned_cols=160  Identities=20%  Similarity=0.186  Sum_probs=114.3

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCC---------------CCCCCCCceeeccceEeeCCCCCCCccCCCceEEE
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKP---------------DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA  162 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~---------------~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~  162 (310)
                      ....+.+++||-.---|||||..+|+....               .+...-+.|+..+...+.+..   +..|  .++++
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~---~~~y--lLNLI  130 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD---GQSY--LLNLI  130 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc---CCce--EEEee
Confidence            445778899999999999999999975322               122345667766665554433   1223  78999


Q ss_pred             eCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--H
Q 021615          163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--R  240 (310)
Q Consensus       163 DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~  240 (310)
                      ||||+.++..       ...+.+..||++++|||++.+...+..-.++..++      .+..+|.|+||+|++.++.  .
T Consensus       131 DTPGHvDFs~-------EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe------~~L~iIpVlNKIDlp~adpe~V  197 (650)
T KOG0462|consen  131 DTPGHVDFSG-------EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE------AGLAIIPVLNKIDLPSADPERV  197 (650)
T ss_pred             cCCCcccccc-------eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH------cCCeEEEeeeccCCCCCCHHHH
Confidence            9999998854       33456678999999999999887777776766665      3678899999999997642  2


Q ss_pred             HHHHHHHHHhc--CCCccccCccCCHHHHHHHHhhcc
Q 021615          241 LQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       241 ~~~l~~~l~~~--g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ...+.+.+...  .+..+||++|.|++++++.+.+..
T Consensus       198 ~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  198 ENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             HHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhC
Confidence            22333333211  344489999999999999876655

>PRK00007 elongation factor G; Reviewed

Probab=99.42  E-value=1.6e-12  Score=131.97  Aligned_cols=117  Identities=21%  Similarity=0.170  Sum_probs=82.7

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCC---CC---C------------CCCCceeeccceEeeCCCCCCCccCCCceEE
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKP---DI---A------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL  161 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~---~i---~------------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i  161 (310)
                      ..+.+|+|+|.+|+|||||+++|+....   .+   .            ...++|++.....+.+..        ..+.+
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--------~~~~l   79 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--------HRINI   79 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--------eEEEE
Confidence            4567899999999999999999974211   11   1            134455555444444332        37999


Q ss_pred             EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      +||||+.++.       ....+.+..+|++++|+|+......++.. ++..+..     .++|.++++||+|+..+
T Consensus        80 iDTPG~~~f~-------~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~-----~~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         80 IDTPGHVDFT-------IEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK-----YKVPRIAFVNKMDRTGA  142 (693)
T ss_pred             EeCCCcHHHH-------HHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH-----cCCCEEEEEECCCCCCC
Confidence            9999987642       23556778899999999998876666544 4445554     36899999999999864

>TIGR00503 prfC peptide chain release factor 3

Probab=99.42  E-value=3.3e-12  Score=125.45  Aligned_cols=130  Identities=20%  Similarity=0.256  Sum_probs=81.8

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC---CCC------CCc-------------eeeccceEeeCCCCCCCccC
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADY------PFT-------------TLMPNLGRLDGDPTLGAEKY  155 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i---~~~------~~t-------------T~~~~~~~v~~~~~~~~~~~  155 (310)
                      +.....+|+++|.+++|||||+++|+.....+   +..      ..+             |.......+++.        
T Consensus         7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~--------   78 (527)
T TIGR00503         7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR--------   78 (527)
T ss_pred             hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC--------
Confidence            55667889999999999999999986322111   100      011             111111222222        


Q ss_pred             CCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      +..+.+|||||+.++       ....++.+..+|++++|+|++.....+ .+.+++.+..     .+.|+++++||+|+.
T Consensus        79 ~~~inliDTPG~~df-------~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~-----~~~PiivviNKiD~~  145 (527)
T TIGR00503        79 DCLVNLLDTPGHEDF-------SEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVTRL-----RDTPIFTFMNKLDRD  145 (527)
T ss_pred             CeEEEEEECCChhhH-------HHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh-----cCCCEEEEEECcccc
Confidence            127899999999654       234456778999999999998753333 3445444443     368999999999997


Q ss_pred             Cc--HhHHHHHHHHH
Q 021615          236 EA--RDRLQSLTEEI  248 (310)
Q Consensus       236 ~~--~~~~~~l~~~l  248 (310)
                      ..  .+..+.+.+.+
T Consensus       146 ~~~~~~ll~~i~~~l  160 (527)
T TIGR00503       146 IRDPLELLDEVENEL  160 (527)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            53  23344444444

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK12739 elongation factor G; Reviewed

Probab=99.42  E-value=2.1e-12  Score=131.19  Aligned_cols=117  Identities=23%  Similarity=0.166  Sum_probs=82.5

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCC---CC---C------------CCCCceeeccceEeeCCCCCCCccCCCceEE
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKP---DI---A------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL  161 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~---~i---~------------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i  161 (310)
                      ..+.+|+++|.+|+|||||+++|+....   .+   .            ...++|++.....+.+..        .++.+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--------~~i~l   77 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--------HRINI   77 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--------EEEEE
Confidence            3567899999999999999999975321   11   1            133455544444444322        27999


Q ss_pred             EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      +||||+.++       .....+.+..+|++++|+|+......++. .++..+..     .++|+++++||+|+...
T Consensus        78 iDTPG~~~f-------~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~-----~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         78 IDTPGHVDF-------TIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK-----YGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             EcCCCHHHH-------HHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECCCCCCC
Confidence            999998653       22456778899999999999886655544 34445554     36899999999999864

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.41  E-value=1.9e-12  Score=127.03  Aligned_cols=130  Identities=21%  Similarity=0.262  Sum_probs=82.8

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC---CCC------CCc-------------eeeccceEeeCCCCCCCccC
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADY------PFT-------------TLMPNLGRLDGDPTLGAEKY  155 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i---~~~------~~t-------------T~~~~~~~v~~~~~~~~~~~  155 (310)
                      +.....+|+|+|.+|+|||||+++|+.....+   +..      ..+             |.......+.+.        
T Consensus         6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~--------   77 (526)
T PRK00741          6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR--------   77 (526)
T ss_pred             hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC--------
Confidence            45667889999999999999999997422111   110      111             111111222222        


Q ss_pred             CCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      +..+.+|||||+.++.       ....+++..+|++++|+|+++....+ .+.+++....     .+.|+++++||+|+.
T Consensus        78 ~~~inliDTPG~~df~-------~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~-----~~iPiiv~iNK~D~~  144 (526)
T PRK00741         78 DCLINLLDTPGHEDFS-------EDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL-----RDTPIFTFINKLDRD  144 (526)
T ss_pred             CEEEEEEECCCchhhH-------HHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh-----cCCCEEEEEECCccc
Confidence            1279999999997652       23456678999999999998765433 3444444443     378999999999997


Q ss_pred             CcH--hHHHHHHHHH
Q 021615          236 EAR--DRLQSLTEEI  248 (310)
Q Consensus       236 ~~~--~~~~~l~~~l  248 (310)
                      ...  +..+++.+.+
T Consensus       145 ~a~~~~~l~~i~~~l  159 (526)
T PRK00741        145 GREPLELLDEIEEVL  159 (526)
T ss_pred             ccCHHHHHHHHHHHh
Confidence            643  2234444443

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.39  E-value=2e-12  Score=121.13  Aligned_cols=161  Identities=26%  Similarity=0.308  Sum_probs=119.1

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCC---------------CCCCCCCceeeccceEeeCCCCCCCccCCCceEEE
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKP---------------DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA  162 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~---------------~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~  162 (310)
                      ..+.+.+..++-.-.-|||||-.+|+....               .+...-+.|+..+...+.+... ++..|  .++++
T Consensus         5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~-~g~~Y--~lnlI   81 (603)
T COG0481           5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAK-DGETY--VLNLI   81 (603)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeC-CCCEE--EEEEc
Confidence            345677889999999999999999975421               2234567787777766665431 22334  78999


Q ss_pred             eCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHH
Q 021615          163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ  242 (310)
Q Consensus       163 DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~  242 (310)
                      ||||+.+++-       ..-+.+..|.+.++|||++.+...+.+...+-.+..      +.-++-|+||+|++.++  .+
T Consensus        82 DTPGHVDFsY-------EVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~------~LeIiPViNKIDLP~Ad--pe  146 (603)
T COG0481          82 DTPGHVDFSY-------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN------NLEIIPVLNKIDLPAAD--PE  146 (603)
T ss_pred             CCCCccceEE-------EehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc------CcEEEEeeecccCCCCC--HH
Confidence            9999999854       234566789999999999998877777777767763      66789999999999764  34


Q ss_pred             HHHHHHHh-cCCCc-----cccCccCCHHHHHHHHhhccC
Q 021615          243 SLTEEILK-IGCDK-----VTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       243 ~l~~~l~~-~g~~~-----~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      ..+++++. +|+..     +||++|.|++++++.+....-
T Consensus       147 rvk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         147 RVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             HHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCC
Confidence            44555543 34443     899999999999999877653

>PRK13768 GTPase; Provisional

Probab=99.37  E-value=3.3e-12  Score=114.58  Aligned_cols=114  Identities=22%  Similarity=0.298  Sum_probs=75.1

Q ss_pred             CceEEEeCCCCCccccCCchHHHHHHHHhhh--cCEEEEecccCCCCcHHHHHHHH--HHHHhcCCCCCCCCEEEEEeCC
Q 021615          157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDYRTVK--EELRMYNPDYLERPFIVVLNKI  232 (310)
Q Consensus       157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~--~d~il~VvD~s~~~~~~~~~~~~--~~l~~~~~~~~~~p~ivv~NK~  232 (310)
                      ..+.++||||+.+.... ......+.+++..  ++++++|+|++......++....  .......   .++|+++|+||+
T Consensus        97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~---~~~~~i~v~nK~  172 (253)
T PRK13768         97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR---LGLPQIPVLNKA  172 (253)
T ss_pred             CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH---cCCCEEEEEEhH
Confidence            36899999999876533 5566677777766  89999999997654444432221  1111111   378999999999


Q ss_pred             CCCCcHhHHHHHHH----------------------------HHHhcC----CCccccCccCCHHHHHHHHhhcc
Q 021615          233 DLPEARDRLQSLTE----------------------------EILKIG----CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       233 Dl~~~~~~~~~l~~----------------------------~l~~~g----~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      |+.+..+. +.+.+                            .+.+.+    +..+|+.++.|++++...+....
T Consensus       173 D~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        173 DLLSEEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             hhcCchhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            99865332 11111                            122223    34589999999999998876544

>PRK13351 elongation factor G; Reviewed

Probab=99.37  E-value=5.4e-12  Score=128.30  Aligned_cols=128  Identities=25%  Similarity=0.258  Sum_probs=83.6

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC---C---------C------CCCceeeccceEeeCCCCCCCccCCCceEE
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI---A---------D------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL  161 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i---~---------~------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i  161 (310)
                      ..+.+|+++|..|+|||||+++|+.....+   +         +      ....|+......+.+.        +..+++
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--------~~~i~l   77 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--------NHRINL   77 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--------CEEEEE
Confidence            346789999999999999999998542111   0         0      0112222222233222        237999


Q ss_pred             EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--h
Q 021615          162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--D  239 (310)
Q Consensus       162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~  239 (310)
                      |||||+.++.       ......++.+|++++|+|+++....+... ++..+..     .++|+++|+||+|+...+  .
T Consensus        78 iDtPG~~df~-------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~~~~-----~~~p~iiviNK~D~~~~~~~~  144 (687)
T PRK13351         78 IDTPGHIDFT-------GEVERSLRVLDGAVVVFDAVTGVQPQTET-VWRQADR-----YGIPRLIFINKMDRVGADLFK  144 (687)
T ss_pred             EECCCcHHHH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCCEEEEEECCCCCCCCHHH
Confidence            9999997642       23456678899999999999876655544 3344544     368999999999998652  2


Q ss_pred             HHHHHHHHH
Q 021615          240 RLQSLTEEI  248 (310)
Q Consensus       240 ~~~~l~~~l  248 (310)
                      ..+++.+.+
T Consensus       145 ~~~~i~~~l  153 (687)
T PRK13351        145 VLEDIEERF  153 (687)
T ss_pred             HHHHHHHHH
Confidence            334444443

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.36  E-value=2.9e-12  Score=112.69  Aligned_cols=114  Identities=22%  Similarity=0.283  Sum_probs=70.0

Q ss_pred             ceEEEeCCCCCccccC---CchHHHHHHHHhhhcCEEEEecccCCCCcHH----HHHHHHHHHHhcCCCCCCCCEEEEEe
Q 021615          158 EATLADLPGLIEGAHL---GKGLGRNFLRHLRRTRLLVHVIDAAAENPVN----DYRTVKEELRMYNPDYLERPFIVVLN  230 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~---~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~----~~~~~~~~l~~~~~~~~~~p~ivv~N  230 (310)
                      .+.++||||+++-...   +.-+...+....  .-+++||+|........    +....+..|..     .+.|+|+|+|
T Consensus       117 ~~~liDTPGQIE~FtWSAsGsIIte~lass~--ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk-----tklp~ivvfN  189 (366)
T KOG1532|consen  117 DYVLIDTPGQIEAFTWSASGSIITETLASSF--PTVVVYVVDTPRSTSPTTFMSNMLYACSILYK-----TKLPFIVVFN  189 (366)
T ss_pred             CEEEEcCCCceEEEEecCCccchHhhHhhcC--CeEEEEEecCCcCCCchhHHHHHHHHHHHHHh-----ccCCeEEEEe
Confidence            5899999999984322   222344443322  35889999976532222    22233334443     4789999999


Q ss_pred             CCCCCCcHh------HHHHHHHHH-----------------------HhcCCCccccCccCCHHHHHHHHhhccCCc
Q 021615          231 KIDLPEARD------RLQSLTEEI-----------------------LKIGCDKVTSETELSSEDAVKSLSTEGGEA  278 (310)
Q Consensus       231 K~Dl~~~~~------~~~~l~~~l-----------------------~~~g~~~~sa~~~~gi~~l~~~l~~~~~~~  278 (310)
                      |+|+.+..-      ..+.+.+.+                       ..+....+|+.+|.|+.++|..+-+...+.
T Consensus       190 K~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  190 KTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence            999987421      112222222                       233444589999999999998876655443

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.36  E-value=8.7e-12  Score=120.38  Aligned_cols=143  Identities=16%  Similarity=0.125  Sum_probs=89.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCC-------------------------------CCCCceeeccceEeeCCCCCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTLG  151 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~-------------------------------~~~~tT~~~~~~~v~~~~~~~  151 (310)
                      .+|+++|..++|||||+.+|+..-..+.                               ...+.|.+.....++..    
T Consensus         8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~----   83 (446)
T PTZ00141          8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP----   83 (446)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC----
Confidence            4699999999999999999975221110                               11223433333222222    


Q ss_pred             CccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCc-------HHHHHHHHHHHHhcCCCCCCCC
Q 021615          152 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-------VNDYRTVKEELRMYNPDYLERP  224 (310)
Q Consensus       152 ~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~-------~~~~~~~~~~l~~~~~~~~~~p  224 (310)
                          +..+.++||||+.++       .......+..+|++++|+|+..+..       .+..+. +..+..     .++|
T Consensus        84 ----~~~i~lIDtPGh~~f-------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh-~~~~~~-----~gi~  146 (446)
T PTZ00141         84 ----KYYFTIIDAPGHRDF-------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREH-ALLAFT-----LGVK  146 (446)
T ss_pred             ----CeEEEEEECCChHHH-------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHH-HHHHHH-----cCCC
Confidence                237899999998654       3455566788999999999987531       222222 233443     3666


Q ss_pred             -EEEEEeCCCCCC---cHh----HHHHHHHHHHhcCC-------CccccCccCCHHH
Q 021615          225 -FIVVLNKIDLPE---ARD----RLQSLTEEILKIGC-------DKVTSETELSSED  266 (310)
Q Consensus       225 -~ivv~NK~Dl~~---~~~----~~~~l~~~l~~~g~-------~~~sa~~~~gi~~  266 (310)
                       +|+++||+|...   .++    ..+++.+.+...++       .++|+.+|.|+.+
T Consensus       147 ~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        147 QMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             eEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence             678999999532   122    23445555555555       3479999999864

>smart00053 DYNc Dynamin, GTPase

Probab=99.35  E-value=1.8e-11  Score=108.45  Aligned_cols=134  Identities=20%  Similarity=0.180  Sum_probs=79.8

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccce-----------EeeCCC-CCC----------------
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-----------RLDGDP-TLG----------------  151 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~-----------~v~~~~-~~~----------------  151 (310)
                      -..+.|+++|+.|+||||++++|++...........|..|..-           .+.... .+.                
T Consensus        24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  103 (240)
T smart00053       24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV  103 (240)
T ss_pred             CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence            3567899999999999999999998742111111222222111           111000 000                


Q ss_pred             ---CccC-------------CCceEEEeCCCCCccccCC------chHHHHHHHHhh-hcCEEEEecccCCCCcHHHHHH
Q 021615          152 ---AEKY-------------SSEATLADLPGLIEGAHLG------KGLGRNFLRHLR-RTRLLVHVIDAAAENPVNDYRT  208 (310)
Q Consensus       152 ---~~~~-------------~~~~~i~DtPG~~~~~~~~------~~l~~~~~~~l~-~~d~il~VvD~s~~~~~~~~~~  208 (310)
                         ...+             ...++++||||+...+...      ..+......+++ ..+++++|+|+......++...
T Consensus       104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~  183 (240)
T smart00053      104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK  183 (240)
T ss_pred             cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence               0000             1468999999997542211      223344566676 4569999999876444444334


Q ss_pred             HHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615          209 VKEELRMYNPDYLERPFIVVLNKIDLPEAR  238 (310)
Q Consensus       209 ~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~  238 (310)
                      +.+.+..     .++|+++|+||+|..+..
T Consensus       184 ia~~ld~-----~~~rti~ViTK~D~~~~~  208 (240)
T smart00053      184 LAKEVDP-----QGERTIGVITKLDLMDEG  208 (240)
T ss_pred             HHHHHHH-----cCCcEEEEEECCCCCCcc
Confidence            4455544     478999999999998653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=7.2e-12  Score=106.43  Aligned_cols=118  Identities=28%  Similarity=0.370  Sum_probs=83.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      ..|.++|+.++|||+|+-.|+...   ....+|+..|+.+.+.....        ...++|.||+.+       +.+.+.
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs---~~~TvtSiepn~a~~r~gs~--------~~~LVD~PGH~r-------lR~kl~  100 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGS---HRGTVTSIEPNEATYRLGSE--------NVTLVDLPGHSR-------LRRKLL  100 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCC---ccCeeeeeccceeeEeecCc--------ceEEEeCCCcHH-------HHHHHH
Confidence            479999999999999999998663   12235677888888765432        579999999843       445555


Q ss_pred             HHhh---hcCEEEEecccCC--CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615          183 RHLR---RTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR  238 (310)
Q Consensus       183 ~~l~---~~d~il~VvD~s~--~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~  238 (310)
                      .++.   .+.+++||||+..  ++..+..+.++..|..........|+++++||.|+..+.
T Consensus       101 e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk  161 (238)
T KOG0090|consen  101 EYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK  161 (238)
T ss_pred             HHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC
Confidence            5554   7999999999875  333344455555554432122457899999999998653

>PTZ00099 rab6; Provisional

Probab=99.35  E-value=4e-12  Score=107.85  Aligned_cols=111  Identities=12%  Similarity=0.056  Sum_probs=81.3

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .+.||||||+.++..       ....+++.||++++|+|++++.+++....|..++.....  ...|+++|+||+|+...
T Consensus        30 ~l~iwDt~G~e~~~~-------~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~--~~~piilVgNK~DL~~~  100 (176)
T PTZ00099         30 RLQLWDTAGQERFRS-------LIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG--KDVIIALVGNKTDLGDL  100 (176)
T ss_pred             EEEEEECCChHHhhh-------ccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccc
Confidence            789999999976532       223456799999999999998889988888887765432  36789999999999642


Q ss_pred             Hh-HHHHHHHHHHhc--CCCccccCccCCHHHHHHHHhhccCC
Q 021615          238 RD-RLQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       238 ~~-~~~~l~~~l~~~--g~~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      .. ..++........  .+.++||+++.|+.++|..++..+.+
T Consensus       101 ~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099        101 RKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             cCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            11 112222333333  35669999999999999999876644

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=9.3e-12  Score=101.57  Aligned_cols=121  Identities=25%  Similarity=0.337  Sum_probs=87.1

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      .+...|++++|..|||||||++.|-..+..+   ...|.+|+...+.....        +++.+|.-|+..       -.
T Consensus        17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~q---hvPTlHPTSE~l~Ig~m--------~ftt~DLGGH~q-------Ar   78 (193)
T KOG0077|consen   17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ---HVPTLHPTSEELSIGGM--------TFTTFDLGGHLQ-------AR   78 (193)
T ss_pred             hccCceEEEEeecCCchhhHHHHHccccccc---cCCCcCCChHHheecCc--------eEEEEccccHHH-------HH
Confidence            3456689999999999999999998876433   23456665555544332        799999999843       34


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR  238 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~  238 (310)
                      +.+..++..||+++|.||+.+.+.+...+.-.+.+-. ...+.+.|+++..||+|.+.+.
T Consensus        79 r~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~-~e~la~vp~lilgnKId~p~a~  137 (193)
T KOG0077|consen   79 RVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLS-DESLATVPFLILGNKIDIPYAA  137 (193)
T ss_pred             HHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHh-HHHHhcCcceeecccccCCCcc
Confidence            5677888999999999999987665544332222211 2234689999999999998763

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.32  E-value=1.8e-11  Score=114.24  Aligned_cols=125  Identities=24%  Similarity=0.282  Sum_probs=83.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC----CCC-----------C-CCCCC---ceeeccc---eEeeCCCCCCCccCCCceE
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA----KPD-----------I-ADYPF---TTLMPNL---GRLDGDPTLGAEKYSSEAT  160 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~----~~~-----------i-~~~~~---tT~~~~~---~~v~~~~~~~~~~~~~~~~  160 (310)
                      .-|+++|+.|+|||||+|+|++.    +..           + .+.++   ||.+|..   ..+...+.   ....-++.
T Consensus        18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~---~~~~~~Vr   94 (492)
T TIGR02836        18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININ---EGTKFKVR   94 (492)
T ss_pred             EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEecc---CCCcccEE
Confidence            45999999999999999999998    433           2 56777   7777765   33332211   11223799


Q ss_pred             EEeCCCCCccccCCchHHHH----------------------HHHHhh-hcCEEEEec-ccCC-----CCcHHHHHHHHH
Q 021615          161 LADLPGLIEGAHLGKGLGRN----------------------FLRHLR-RTRLLVHVI-DAAA-----ENPVNDYRTVKE  211 (310)
Q Consensus       161 i~DtPG~~~~~~~~~~l~~~----------------------~~~~l~-~~d~il~Vv-D~s~-----~~~~~~~~~~~~  211 (310)
                      ++||+|+......+.--...                      ..+.+. ++|+.++|. |.+-     ....+.-+.+.+
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            99999997643322111111                      344455 899999999 8751     123334466778


Q ss_pred             HHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          212 ELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       212 ~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      +|+.     .++|+++|+||+|-.
T Consensus       175 eLk~-----~~kPfiivlN~~dp~  193 (492)
T TIGR02836       175 ELKE-----LNKPFIILLNSTHPY  193 (492)
T ss_pred             HHHh-----cCCCEEEEEECcCCC
Confidence            8887     589999999999944

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.32  E-value=2.4e-11  Score=117.27  Aligned_cols=161  Identities=14%  Similarity=0.158  Sum_probs=97.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEe---------------eCCCCC----------CCcc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRL---------------DGDPTL----------GAEK  154 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v---------------~~~~~~----------~~~~  154 (310)
                      ..|+++|.-..|||||+.+|++.....   .-.-+.|++.-....               ......          ....
T Consensus        35 ~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (460)
T PTZ00327         35 INIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMT  114 (460)
T ss_pred             EEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccccc
Confidence            569999999999999999999864311   111122221110000               000000          0001


Q ss_pred             CCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCC-CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615          155 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  233 (310)
Q Consensus       155 ~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D  233 (310)
                      +...+.++||||+.+       +.+.....+..+|++++|+|+..+ ...+..+.+ ..+...    .-.++++|+||+|
T Consensus       115 ~~~~i~~IDtPGH~~-------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~l----gi~~iIVvlNKiD  182 (460)
T PTZ00327        115 LKRHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIM----KLKHIIILQNKID  182 (460)
T ss_pred             ccceEeeeeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHc----CCCcEEEEEeccc
Confidence            123689999999843       344556667789999999999874 222222222 223322    1246899999999


Q ss_pred             CCCcHh---HHHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhhcc
Q 021615          234 LPEARD---RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       234 l~~~~~---~~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +.+...   ..+++.+.+..     ..+..+|+.++.|++.+++.|....
T Consensus       183 lv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        183 LVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             ccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            986432   23344444432     2455589999999999999987543

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.31  E-value=1.9e-12  Score=112.95  Aligned_cols=122  Identities=34%  Similarity=0.523  Sum_probs=99.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      ++|+++|+|.+|||||+..|++....++.|.|||.....|.+.+...        ++++.|.||+++++..++|.+++..
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~ga--------Kiqlldlpgiiegakdgkgrg~qvi  131 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGA--------KIQLLDLPGIIEGAKDGKGRGKQVI  131 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEecccc--------ceeeecCcchhcccccCCCCccEEE
Confidence            47999999999999999999999988999999999888888766543        8999999999999999999999988


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  234 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl  234 (310)
                      ...+.|+++++|+|+-.+  ..+-+.+.+||+-+.-.+...|--+..-|-|.
T Consensus       132 avartcnli~~vld~~kp--~~hk~~ie~eleg~girlnk~pp~i~~kkKdk  181 (358)
T KOG1487|consen  132 AVARTCNLIFIVLDVLKP--LSHKKIIEKELEGFGIRLNKQPPNIGTKKKDK  181 (358)
T ss_pred             EEeecccEEEEEeeccCc--ccHHHHHHHhhhcceeeccCCCCCcccccccc
Confidence            888899999999999854  44556677888876544444454444444444

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.30  E-value=2.2e-11  Score=106.38  Aligned_cols=125  Identities=19%  Similarity=0.149  Sum_probs=74.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCC--CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~--~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      +|+|+|.+|+||||++|.|++.......  ....|............        ..+.|+||||+.+.......+.+.+
T Consensus         2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--------~~v~VIDTPGl~d~~~~~~~~~~~i   73 (212)
T PF04548_consen    2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--------RQVTVIDTPGLFDSDGSDEEIIREI   73 (212)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--------EEEEEEE--SSEETTEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--------eEEEEEeCCCCCCCcccHHHHHHHH
Confidence            5899999999999999999998754322  22234333333322222        3799999999976544333333433


Q ss_pred             HHH----hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615          182 LRH----LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR  238 (310)
Q Consensus       182 ~~~----l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~  238 (310)
                      .+.    ....+++++|++.. .-+..+...+......+.+.. .+.++||++..|.....
T Consensus        74 ~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~  132 (212)
T PF04548_consen   74 KRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEI-WKHTIVVFTHADELEDD  132 (212)
T ss_dssp             HHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTT
T ss_pred             HHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHH-HhHhhHHhhhccccccc
Confidence            332    34579999999988 344444444433333444332 46789999999876643

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PF01018 GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several proteins have recently been shown to contain the 5 structural motifs characteristic of GTP-binding proteins []

Probab=99.30  E-value=9.4e-13  Score=108.69  Aligned_cols=70  Identities=41%  Similarity=0.688  Sum_probs=40.9

Q ss_pred             cceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeeh
Q 021615           18 MHIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSL   95 (310)
Q Consensus        18 ~~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~   95 (310)
                      +.|.| +||+|+| +++++++||.++++++++||||.||.||.+|.++.             .+.|+.++.|++||++.+
T Consensus        84 l~i~VP~GT~V~~~~~~~~l~Dl~~~g~~~lvArGG~GG~GN~~f~s~~-------------~~~P~~~~~G~~Ge~~~l  150 (156)
T PF01018_consen   84 LIIKVPVGTVVYDADTGELLADLTEPGQRFLVARGGRGGLGNAHFKSST-------------NRAPRFATPGEPGEERKL  150 (156)
T ss_dssp             EEEEE-TTEEEEETTT--EEEEE-STT-EEEEE--------GGGC-BTT-------------CSS--EEE------EEEE
T ss_pred             cEeeecCCcEEEeeccccchheeecccceeEEecCCCCccccccccCCC-------------CCCCCccCCCCCceEEEE
Confidence            45566 8999999 78999999999999999999999999998876532             236788999999999999


Q ss_pred             hhhhh
Q 021615           96 ELILR  100 (310)
Q Consensus        96 ~~~l~  100 (310)
                      .||||
T Consensus       151 ~LELK  155 (156)
T PF01018_consen  151 ELELK  155 (156)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99987

These include murine DRG protein; GTP1 protein from Schizosaccharomyces pombe; OBG protein from Bacillus subtilis; and several others. Although the proteins contain GTP-binding motifs and are similar to each other, they do not share sequence similarity to other GTP-binding proteins, and have thus been classed as a novel group, the GTP1/OBG family. As yet, the functions of these proteins is uncertain, but they have been shown to be important in development and normal cell metabolism [, ].; GO: 0005525 GTP binding; PDB: 1LNZ_A 1UDX_A.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=4.9e-11  Score=108.79  Aligned_cols=148  Identities=20%  Similarity=0.284  Sum_probs=97.3

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCC---CCCCCCCcee------eccceEeeCC-----CCCCCccC---------
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKP---DIADYPFTTL------MPNLGRLDGD-----PTLGAEKY---------  155 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~---~i~~~~~tT~------~~~~~~v~~~-----~~~~~~~~---------  155 (310)
                      ...-+-|.++|+...||||+|+.|+..+.   .+++.|.|..      .+..+.+++.     +..+...+         
T Consensus        55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln  134 (532)
T KOG1954|consen   55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN  134 (532)
T ss_pred             cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence            34456799999999999999999998862   3355554432      2222222221     11111110         


Q ss_pred             -----------CCceEEEeCCCCCccccCCchHHHHH----HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCC
Q 021615          156 -----------SSEATLADLPGLIEGAHLGKGLGRNF----LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY  220 (310)
Q Consensus       156 -----------~~~~~i~DtPG~~~~~~~~~~l~~~~----~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~  220 (310)
                                 -.+++|+||||+.++..+....+..|    ...+++||.|++++|+...+-..+++.+...|+-     
T Consensus       135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG-----  209 (532)
T KOG1954|consen  135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG-----  209 (532)
T ss_pred             HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC-----
Confidence                       14689999999998876543333222    2335799999999999987777778878777775     


Q ss_pred             CCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc
Q 021615          221 LERPFIVVLNKIDLPEARDRLQSLTEEILKI  251 (310)
Q Consensus       221 ~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~  251 (310)
                      .+-.+-||+||+|..+.++.+...-...+++
T Consensus       210 ~EdkiRVVLNKADqVdtqqLmRVyGALmWsl  240 (532)
T KOG1954|consen  210 HEDKIRVVLNKADQVDTQQLMRVYGALMWSL  240 (532)
T ss_pred             CcceeEEEeccccccCHHHHHHHHHHHHHhh
Confidence            3567889999999998766444444444444

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.26  E-value=4.9e-11  Score=93.05  Aligned_cols=140  Identities=18%  Similarity=0.169  Sum_probs=94.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .++++||..|+|||||++.|-|...         +....-.+++..          =..+||||.--   +++.+-.+..
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~---------lykKTQAve~~d----------~~~IDTPGEy~---~~~~~Y~aL~   59 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDT---------LYKKTQAVEFND----------KGDIDTPGEYF---EHPRWYHALI   59 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchh---------hhcccceeeccC----------ccccCCchhhh---hhhHHHHHHH
Confidence            4699999999999999999999862         111111233211          13589999531   1122223344


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC---CCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g---~~~~sa~  259 (310)
                      .....+|++++|-.+.++.+.-.-.    .+     ....+|+|-|++|+|+.+. ..++..+++|.+.|   +..+|+.
T Consensus        60 tt~~dadvi~~v~~and~~s~f~p~----f~-----~~~~k~vIgvVTK~DLaed-~dI~~~~~~L~eaGa~~IF~~s~~  129 (148)
T COG4917          60 TTLQDADVIIYVHAANDPESRFPPG----FL-----DIGVKKVIGVVTKADLAED-ADISLVKRWLREAGAEPIFETSAV  129 (148)
T ss_pred             HHhhccceeeeeecccCccccCCcc----cc-----cccccceEEEEecccccch-HhHHHHHHHHHHcCCcceEEEecc
Confidence            4457899999999888754321111    11     1135779999999999963 44677777777766   4448999


Q ss_pred             ccCCHHHHHHHHhhc
Q 021615          260 TELSSEDAVKSLSTE  274 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~  274 (310)
                      ...|+++++++|...
T Consensus       130 d~~gv~~l~~~L~~~  144 (148)
T COG4917         130 DNQGVEELVDYLASL  144 (148)
T ss_pred             CcccHHHHHHHHHhh
Confidence            999999999998654

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.25  E-value=5.3e-11  Score=114.94  Aligned_cols=145  Identities=17%  Similarity=0.144  Sum_probs=88.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCCCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTL  150 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~~~  150 (310)
                      -.+|+++|..++|||||+-+|+..-..+                               ...-+.|++.....+...   
T Consensus         7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~---   83 (447)
T PLN00043          7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT---   83 (447)
T ss_pred             eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC---
Confidence            3569999999999999999987422111                               001122333222222211   


Q ss_pred             CCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcH------HHHHHHHHHHHhcCCCCCCCC
Q 021615          151 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLERP  224 (310)
Q Consensus       151 ~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~------~~~~~~~~~l~~~~~~~~~~p  224 (310)
                           +..++++||||+.++       .......+..+|++++|+|+......      .+....+..+..     .+.|
T Consensus        84 -----~~~i~liDtPGh~df-------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-----~gi~  146 (447)
T PLN00043         84 -----KYYCTVIDAPGHRDF-------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-----LGVK  146 (447)
T ss_pred             -----CEEEEEEECCCHHHH-------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-----cCCC
Confidence                 237899999999655       33445567789999999999874210      122222222332     3564


Q ss_pred             -EEEEEeCCCCCCc---H----hHHHHHHHHHHhcCC-------CccccCccCCHHH
Q 021615          225 -FIVVLNKIDLPEA---R----DRLQSLTEEILKIGC-------DKVTSETELSSED  266 (310)
Q Consensus       225 -~ivv~NK~Dl~~~---~----~~~~~l~~~l~~~g~-------~~~sa~~~~gi~~  266 (310)
                       +++++||+|+.+.   .    +..+++...+.+.|+       .++|+.+|+|+.+
T Consensus       147 ~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        147 QMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             cEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence             6889999998631   1    224455556665563       4579999998754

>cd01882 BMS1 Bms1

Probab=99.25  E-value=1.4e-10  Score=102.31  Aligned_cols=109  Identities=22%  Similarity=0.311  Sum_probs=71.0

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCC--CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~--i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      ....|+++|.+|+|||||++.|.+....  +....++ .    ..+...        ..++.++||||..          
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i----~i~~~~--------~~~i~~vDtPg~~----------   94 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I----TVVTGK--------KRRLTFIECPNDI----------   94 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E----EEEecC--------CceEEEEeCCchH----------
Confidence            3456999999999999999999875311  1111111 0    011111        2378999999863          


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCE-EEEEeCCCCCCcH
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLNKIDLPEAR  238 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~-ivv~NK~Dl~~~~  238 (310)
                      ...+..++.+|++++|+|++......+. .++..+..     .+.|. ++|+||+|+....
T Consensus        95 ~~~l~~ak~aDvVllviDa~~~~~~~~~-~i~~~l~~-----~g~p~vi~VvnK~D~~~~~  149 (225)
T cd01882          95 NAMIDIAKVADLVLLLIDASFGFEMETF-EFLNILQV-----HGFPRVMGVLTHLDLFKKN  149 (225)
T ss_pred             HHHHHHHHhcCEEEEEEecCcCCCHHHH-HHHHHHHH-----cCCCeEEEEEeccccCCcH
Confidence            2334566789999999999875554443 34455554     25675 4599999997543

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.24  E-value=5.8e-12  Score=111.77  Aligned_cols=110  Identities=23%  Similarity=0.296  Sum_probs=56.5

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhh--cCEEEEecccCCCCcHHHH-HHHHHHHH-hcCCCCCCCCEEEEEeCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDY-RTVKEELR-MYNPDYLERPFIVVLNKID  233 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~--~d~il~VvD~s~~~~~~~~-~~~~~~l~-~~~~~~~~~p~ivv~NK~D  233 (310)
                      .+.++|||||++.... ......+.+.+.+  .-++++++|+........+ ..++-.+. .+.   .+.|.+.|+||+|
T Consensus        92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~---~~lP~vnvlsK~D  167 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTH-SDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR---LELPHVNVLSKID  167 (238)
T ss_dssp             SEEEEE--SSHHHHHH-SHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH---HTSEEEEEE--GG
T ss_pred             cEEEEeCCCCEEEEEe-chhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh---CCCCEEEeeeccC
Confidence            6899999999986432 2233344455542  3478999998864433222 22222211 111   3789999999999


Q ss_pred             CCCcH--h---------------------HHHHHHHHHHhc----CCCccccCccCCHHHHHHHH
Q 021615          234 LPEAR--D---------------------RLQSLTEEILKI----GCDKVTSETELSSEDAVKSL  271 (310)
Q Consensus       234 l~~~~--~---------------------~~~~l~~~l~~~----g~~~~sa~~~~gi~~l~~~l  271 (310)
                      +.+..  .                     ..+++.+.+...    .+..+|+++++|+.+++..+
T Consensus       168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~i  232 (238)
T PF03029_consen  168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAI  232 (238)
T ss_dssp             GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHH
T ss_pred             cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHH
Confidence            98721  0                     011122222222    34457899999999888775

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.23  E-value=7.9e-11  Score=115.61  Aligned_cols=128  Identities=15%  Similarity=0.074  Sum_probs=78.5

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCC-CCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC--
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADY-PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--  174 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~-~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~--  174 (310)
                      +....+|+|+|.+|+||||++|+|++.+.. +..+ +.||.. ........        +..+.|+||||+.+.....  
T Consensus       115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~id--------G~~L~VIDTPGL~dt~~dq~~  185 (763)
T TIGR00993       115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQ--------GVKIRVIDTPGLKSSASDQSK  185 (763)
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEEC--------CceEEEEECCCCCccccchHH
Confidence            444567999999999999999999998743 3443 455542 21111111        1279999999998763221  


Q ss_pred             -chHHHHHHHHhh--hcCEEEEecccCCCCc-HHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          175 -KGLGRNFLRHLR--RTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       175 -~~l~~~~~~~l~--~~d~il~VvD~s~~~~-~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                       ..+.......+.  .+|++|||........ .++.. +.+.+...........+|||+++.|...
T Consensus       186 neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~-aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       186 NEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLP-LLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHH-HHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence             223333333433  4799999987654322 23333 3344433322223578999999999875

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PTZ00416 elongation factor 2; Provisional

Probab=99.23  E-value=9.5e-11  Score=121.18  Aligned_cols=123  Identities=20%  Similarity=0.147  Sum_probs=78.4

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCC---------------ceeeccceEeeCCCC--CCCccCCCceEE
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPF---------------TTLMPNLGRLDGDPT--LGAEKYSSEATL  161 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~---------------tT~~~~~~~v~~~~~--~~~~~~~~~~~i  161 (310)
                      ..+.+|+++|..++|||||+++|+.....+ ....+               +|.......+.+...  ......+..+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            345689999999999999999998754322 11111               122211111211100  000001226899


Q ss_pred             EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      +||||+.++.       ......++.+|++++|+|+..+...++.. +++.+..     .++|+++++||+|+.
T Consensus        97 iDtPG~~~f~-------~~~~~al~~~D~ailVvda~~g~~~~t~~-~~~~~~~-----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFS-------SEVTAALRVTDGALVVVDCVEGVCVQTET-VLRQALQ-----ERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHH-------HHHHHHHhcCCeEEEEEECCCCcCccHHH-HHHHHHH-----cCCCEEEEEEChhhh
Confidence            9999997652       24456678899999999999866555543 4455554     368999999999997

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.22  E-value=8.5e-11  Score=121.70  Aligned_cols=121  Identities=19%  Similarity=0.125  Sum_probs=79.0

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCC---------------ceeeccceEeeCCCC----------CCCc
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPF---------------TTLMPNLGRLDGDPT----------LGAE  153 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~---------------tT~~~~~~~v~~~~~----------~~~~  153 (310)
                      ..+.+|+++|..++|||||+.+|+.....+ ....+               .|.......+.+...          ....
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            356789999999999999999998654322 11111               122222222222100          0001


Q ss_pred             cCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615          154 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  233 (310)
Q Consensus       154 ~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D  233 (310)
                        +..+.++||||+.++.       ......++.+|++++|+|+..+...+....| +.+..     .++|+++++||+|
T Consensus        97 --~~~inliDtPGh~dF~-------~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~-----~~~p~i~~iNK~D  161 (843)
T PLN00116         97 --EYLINLIDSPGHVDFS-------SEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG-----ERIRPVLTVNKMD  161 (843)
T ss_pred             --ceEEEEECCCCHHHHH-------HHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHH-----CCCCEEEEEECCc
Confidence              2268999999997763       2445667889999999999987666554444 44443     3789999999999


Q ss_pred             CC
Q 021615          234 LP  235 (310)
Q Consensus       234 l~  235 (310)
                      +.
T Consensus       162 ~~  163 (843)
T PLN00116        162 RC  163 (843)
T ss_pred             cc
Confidence            98

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.21  E-value=4.7e-11  Score=121.81  Aligned_cols=120  Identities=17%  Similarity=0.161  Sum_probs=75.9

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC----------CCC------CCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------ADY------PFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  163 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i----------~~~------~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D  163 (310)
                      ..+.+|+++|..++|||||+++|+.....+          .++      .++|+...........  ...  +..+.++|
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~--~~~--~~~i~liD   92 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY--EGN--EYLINLID   92 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee--cCC--ceEEEEEe
Confidence            346789999999999999999997532111          011      1223322221111100  111  12789999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                      |||+.++.       ......+..+|++++|+|+......++...| ..+..     .+.|.++|+||+|+..
T Consensus        93 TPG~~~f~-------~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~-----~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        93 TPGHVDFG-------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK-----ENVKPVLFINKVDRLI  152 (720)
T ss_pred             CCCccccH-------HHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH-----cCCCEEEEEEChhccc
Confidence            99997752       2345677899999999999875444443333 33333     3578899999999974

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.21  E-value=8.6e-11  Score=112.74  Aligned_cols=155  Identities=15%  Similarity=0.218  Sum_probs=106.4

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCC--CCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAK--PDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~--~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      .-.+|+++|..|+|||||+-+|+..+  ..+ ...+..|+.+.   +..+      .  ....++||.--.+.       
T Consensus         8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPad---vtPe------~--vpt~ivD~ss~~~~-------   69 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPAD---VTPE------N--VPTSIVDTSSDSDD-------   69 (625)
T ss_pred             cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCc---cCcC------c--CceEEEecccccch-------
Confidence            34579999999999999999999876  223 22233333211   1111      1  15799999843322       


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-----HHHHHHHHHHhc
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTEEILKI  251 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----~~~~l~~~l~~~  251 (310)
                      .......++++|++.+|++.+++.+.+.+ ..|+-.++.......+.|+|+|+||+|......     ....+...+.+.
T Consensus        70 ~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei  149 (625)
T KOG1707|consen   70 RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI  149 (625)
T ss_pred             hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH
Confidence            12345678899999999999987777766 456677776554456899999999999976432     244455555443


Q ss_pred             -CCCccccCccCCHHHHHHHHhh
Q 021615          252 -GCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       252 -g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                       .+.++||++..++.++|...-.
T Consensus       150 EtciecSA~~~~n~~e~fYyaqK  172 (625)
T KOG1707|consen  150 ETCIECSALTLANVSELFYYAQK  172 (625)
T ss_pred             HHHHhhhhhhhhhhHhhhhhhhh
Confidence             4667899999999999987543

>PRK12740 elongation factor G; Reviewed

Probab=99.15  E-value=4.1e-10  Score=114.39  Aligned_cols=109  Identities=25%  Similarity=0.216  Sum_probs=72.1

Q ss_pred             EcCCCCcHHHHHHHHHcCCCCC---CC---------------CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCc
Q 021615          108 VGLPNAGKSTLLAAITHAKPDI---AD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE  169 (310)
Q Consensus       108 vG~~naGKSSLln~L~~~~~~i---~~---------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~  169 (310)
                      +|.+|+|||||+++|+.....+   ++               ..+.|.......+.+.        +..+.+|||||+.+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--------~~~i~liDtPG~~~   72 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--------GHKINLIDTPGHVD   72 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--------CEEEEEEECCCcHH
Confidence            5999999999999996543221   11               1122222222233222        12799999999965


Q ss_pred             cccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          170 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       170 ~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      +       ...+...+..+|++++|+|++......... ++..+..     .++|+++|+||+|+...
T Consensus        73 ~-------~~~~~~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~-----~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         73 F-------TGEVERALRVLDGAVVVVCAVGGVEPQTET-VWRQAEK-----YGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             H-------HHHHHHHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH-----cCCCEEEEEECCCCCCC
Confidence            3       234456678899999999999876555443 3344443     36899999999999754

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=3.9e-10  Score=113.26  Aligned_cols=120  Identities=27%  Similarity=0.243  Sum_probs=84.1

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCC---CCCC---------------CceeeccceEeeCCCCCCCccCCCceE
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYP---------------FTTLMPNLGRLDGDPTLGAEKYSSEAT  160 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i---~~~~---------------~tT~~~~~~~v~~~~~~~~~~~~~~~~  160 (310)
                      +..+.+|+++|+-.+|||||..+|+-....+   +...               +.|+......+....       +..++
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-------~~~iN   79 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-------DYRIN   79 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-------ceEEE
Confidence            4566789999999999999999997443222   1111               122222222222221       12899


Q ss_pred             EEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615          161 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR  238 (310)
Q Consensus       161 i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~  238 (310)
                      ++||||+.++..       ...+.++-+|+++.|+|+......+.. .+|+....|     ++|.++++||+|+..++
T Consensus        80 lIDTPGHVDFt~-------EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~~-----~vp~i~fiNKmDR~~a~  144 (697)
T COG0480          80 LIDTPGHVDFTI-------EVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADKY-----GVPRILFVNKMDRLGAD  144 (697)
T ss_pred             EeCCCCccccHH-------HHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhhc-----CCCeEEEEECccccccC
Confidence            999999999844       456778899999999999987766654 455555554     79999999999998763

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=1.2e-10  Score=93.01  Aligned_cols=153  Identities=17%  Similarity=0.153  Sum_probs=97.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .++.++|.-|+||+|++-++--.+.- ..  -.|...+...+++...        ++++||.-|+..       +..-|.
T Consensus        19 ~rililgldGaGkttIlyrlqvgevv-tt--kPtigfnve~v~yKNL--------k~~vwdLggqtS-------irPyWR   80 (182)
T KOG0072|consen   19 MRILILGLDGAGKTTILYRLQVGEVV-TT--KPTIGFNVETVPYKNL--------KFQVWDLGGQTS-------IRPYWR   80 (182)
T ss_pred             eEEEEeeccCCCeeEEEEEcccCccc-cc--CCCCCcCccccccccc--------cceeeEccCccc-------ccHHHH
Confidence            45899999999999999887644311 11  1122223334444322        899999999843       334555


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHH----HHHHh--cCCCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLT----EEILK--IGCDK  255 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~----~~l~~--~g~~~  255 (310)
                      .++...|.++||||.++.+....... +...|.+  +++.+..+++++||.|.......-+.+.    ..++.  ..+..
T Consensus        81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E--~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~  158 (182)
T KOG0072|consen   81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQE--EELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVK  158 (182)
T ss_pred             HHhcccceEEEEEeccchhhhhhhHHHHHHHhcc--HhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEe
Confidence            66789999999999998654433221 1122221  2334567889999999876532211111    12222  34556


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .||..|.|+++.+++|....
T Consensus       159 tSA~kg~Gld~~~DWL~~~l  178 (182)
T KOG0072|consen  159 TSAVKGEGLDPAMDWLQRPL  178 (182)
T ss_pred             eccccccCCcHHHHHHHHHH
Confidence            89999999999999987654

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=5.2e-10  Score=103.91  Aligned_cols=146  Identities=21%  Similarity=0.227  Sum_probs=88.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCCCCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTLG  151 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~~~~  151 (310)
                      .+++++|...+|||||+-+|+-.-..+                               ..+-+.|.+.....++.+    
T Consensus         8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~----   83 (428)
T COG5256           8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD----   83 (428)
T ss_pred             eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC----
Confidence            468999999999999999996331111                               112223333322223222    


Q ss_pred             CccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-------cHHHHHHHHHHHHhcCCCCCCCC
Q 021615          152 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYLERP  224 (310)
Q Consensus       152 ~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-------~~~~~~~~~~~l~~~~~~~~~~p  224 (310)
                        .  ..++|+|+||+.++       ......-+.+||+.++|||+...+       .-+..+.+  .|....   .-..
T Consensus        84 --k--~~~tIiDaPGHrdF-------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~--~La~tl---Gi~~  147 (428)
T COG5256          84 --K--YNFTIIDAPGHRDF-------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA--FLARTL---GIKQ  147 (428)
T ss_pred             --C--ceEEEeeCCchHHH-------HHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH--HHHHhc---CCce
Confidence              1  26999999997554       233344457899999999998752       11222211  222221   1356


Q ss_pred             EEEEEeCCCCCC-cHhHHHHHHHHHH----hcCC-------CccccCccCCHHHHH
Q 021615          225 FIVVLNKIDLPE-ARDRLQSLTEEIL----KIGC-------DKVTSETELSSEDAV  268 (310)
Q Consensus       225 ~ivv~NK~Dl~~-~~~~~~~l~~~l~----~~g~-------~~~sa~~~~gi~~l~  268 (310)
                      +||++||+|..+ .+++++++...+.    .+|+       .++|+..|+++.+.-
T Consensus       148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s  203 (428)
T COG5256         148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS  203 (428)
T ss_pred             EEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence            899999999985 3345555554443    3444       447999998877654

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.10  E-value=3e-10  Score=116.16  Aligned_cols=120  Identities=16%  Similarity=0.170  Sum_probs=76.6

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC-CC---------------CceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-YP---------------FTTLMPNLGRLDGDPTLGAEKYSSEATLAD  163 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~-~~---------------~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D  163 (310)
                      ..+.+|+++|..++|||||+.+|+.....+.. ..               +.|+......+.+.  +...  +..+.++|
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~--~~~~--~~~i~liD   93 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHE--YEGK--EYLINLID   93 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEE--ecCC--cEEEEEEc
Confidence            45678999999999999999999864322211 00               12222222222110  0101  12689999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                      |||+.++.       ....+.+..+|++++|+|+......+....| ..+..     .+.|.++++||+|+..
T Consensus        94 tPG~~df~-------~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~-----~~~~~iv~iNK~D~~~  153 (731)
T PRK07560         94 TPGHVDFG-------GDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALR-----ERVKPVLFINKVDRLI  153 (731)
T ss_pred             CCCccChH-------HHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHH-----cCCCeEEEEECchhhc
Confidence            99997752       3445667889999999999876554444444 33333     2568899999999863

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.09  E-value=1.4e-09  Score=113.37  Aligned_cols=147  Identities=21%  Similarity=0.165  Sum_probs=93.4

Q ss_pred             cHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC----------CCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          114 GKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----------GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       114 GKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~----------~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      +||||+.+|.+.+.......+.|++.-...++.....          ....-...+.+|||||+..+..       ...+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~-------lr~~  545 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTS-------LRKR  545 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHH-------HHHh
Confidence            4999999999998766777788886655555433110          0000012589999999865421       1123


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-----------------hHHHHH--
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-----------------DRLQSL--  244 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-----------------~~~~~l--  244 (310)
                      .+..+|++++|+|+++....+..+.+ ..+..     .++|+++|+||+|+....                 ....++  
T Consensus       546 g~~~aDivlLVVDa~~Gi~~qT~e~I-~~lk~-----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~  619 (1049)
T PRK14845        546 GGSLADLAVLVVDINEGFKPQTIEAI-NILRQ-----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI  619 (1049)
T ss_pred             hcccCCEEEEEEECcccCCHhHHHHH-HHHHH-----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence            35679999999999875444444433 34443     368999999999996321                 011111  


Q ss_pred             -----HHHHHhcCC-----------------CccccCccCCHHHHHHHHhh
Q 021615          245 -----TEEILKIGC-----------------DKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       245 -----~~~l~~~g~-----------------~~~sa~~~~gi~~l~~~l~~  273 (310)
                           ...|...|+                 .++||++|+|+.++...+..
T Consensus       620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~  670 (1049)
T PRK14845        620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG  670 (1049)
T ss_pred             HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence                 112333332                 33899999999999987753

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.08  E-value=7.6e-10  Score=100.59  Aligned_cols=139  Identities=17%  Similarity=0.183  Sum_probs=76.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCC--CCC--------ceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIAD--YPF--------TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH  172 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~--~~~--------tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~  172 (310)
                      ++|.|+|.+|+|||||+|.|++.......  .+.        .++......+...      .....+.++||||+.+...
T Consensus         5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~------~~~l~LtiiDTpGfGd~i~   78 (281)
T PF00735_consen    5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEEN------GVKLNLTIIDTPGFGDNID   78 (281)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEET------CEEEEEEEEEEC-CSSSST
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccC------CcceEEEEEeCCCcccccc
Confidence            57999999999999999999987633321  111        1112111122111      1123789999999976533


Q ss_pred             CC-------chHHHHHHHHh-------------hhcCEEEEecccCCC-CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 021615          173 LG-------KGLGRNFLRHL-------------RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNK  231 (310)
Q Consensus       173 ~~-------~~l~~~~~~~l-------------~~~d~il~VvD~s~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK  231 (310)
                      ..       ..+..+|..++             .+.|+++|+++++.. -...+++ .++.|..      ..++|-|+.|
T Consensus        79 n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~-~mk~Ls~------~vNvIPvIaK  151 (281)
T PF00735_consen   79 NSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE-FMKRLSK------RVNVIPVIAK  151 (281)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH-HHHHHTT------TSEEEEEEST
T ss_pred             chhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH-HHHHhcc------cccEEeEEec
Confidence            21       11223333333             256999999998753 3344554 3456653      5789999999


Q ss_pred             CCCCCcHhH---HHHHHHHHHhcCCC
Q 021615          232 IDLPEARDR---LQSLTEEILKIGCD  254 (310)
Q Consensus       232 ~Dl~~~~~~---~~~l~~~l~~~g~~  254 (310)
                      +|.....+.   ...+.+.+...++.
T Consensus       152 aD~lt~~el~~~k~~i~~~l~~~~I~  177 (281)
T PF00735_consen  152 ADTLTPEELQAFKQRIREDLEENNIK  177 (281)
T ss_dssp             GGGS-HHHHHHHHHHHHHHHHHTT--
T ss_pred             ccccCHHHHHHHHHHHHHHHHHcCce
Confidence            999986542   23344444444443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.07  E-value=3.5e-10  Score=105.65  Aligned_cols=156  Identities=21%  Similarity=0.240  Sum_probs=81.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCC---CCCC--CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKP---DIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  175 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~---~i~~--~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~  175 (310)
                      ...+|+|+|.+|+|||||||+|.|-..   ..++  ...||..+..+..+..         ..+.+||.||+......  
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~---------pnv~lWDlPG~gt~~f~--  102 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF---------PNVTLWDLPGIGTPNFP--  102 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS----------TTEEEEEE--GGGSS----
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC---------CCCeEEeCCCCCCCCCC--
Confidence            445899999999999999999976321   1122  2245665555444322         26899999998643221  


Q ss_pred             hHHHHHHHH--hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC-C-----------cHhHH
Q 021615          176 GLGRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP-E-----------ARDRL  241 (310)
Q Consensus       176 ~l~~~~~~~--l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~-~-----------~~~~~  241 (310)
                        ...++..  +.+.|.++++.+..  .+..+.. +..++..     .++|+.+|.+|+|.. .           .+..+
T Consensus       103 --~~~Yl~~~~~~~yD~fiii~s~r--f~~ndv~-La~~i~~-----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L  172 (376)
T PF05049_consen  103 --PEEYLKEVKFYRYDFFIIISSER--FTENDVQ-LAKEIQR-----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLL  172 (376)
T ss_dssp             --HHHHHHHTTGGG-SEEEEEESSS----HHHHH-HHHHHHH-----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHH
T ss_pred             --HHHHHHHccccccCEEEEEeCCC--CchhhHH-HHHHHHH-----cCCcEEEEEecccccHhhhhccCCcccCHHHHH
Confidence              2233333  57889888876533  3334433 4566766     489999999999961 1           11222


Q ss_pred             HH----HHHHHHhcCCCc-----cccCcc--CCHHHHHHHHhhccCC
Q 021615          242 QS----LTEEILKIGCDK-----VTSETE--LSSEDAVKSLSTEGGE  277 (310)
Q Consensus       242 ~~----l~~~l~~~g~~~-----~sa~~~--~gi~~l~~~l~~~~~~  277 (310)
                      +.    +.+.|.+.++..     +|...-  ..+..+.+.|...+..
T Consensus       173 ~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~  219 (376)
T PF05049_consen  173 QEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA  219 (376)
T ss_dssp             HHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred             HHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence            33    344455555443     444433  3466666666655543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.06  E-value=1.9e-09  Score=99.85  Aligned_cols=97  Identities=9%  Similarity=0.108  Sum_probs=62.2

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .+.|+||+|......          .....||++++|++...++..+.   +...+-       +..-++|+||+|+...
T Consensus       150 d~viieT~Gv~qs~~----------~i~~~aD~vlvv~~p~~gd~iq~---~k~gi~-------E~aDIiVVNKaDl~~~  209 (332)
T PRK09435        150 DVILVETVGVGQSET----------AVAGMVDFFLLLQLPGAGDELQG---IKKGIM-------ELADLIVINKADGDNK  209 (332)
T ss_pred             CEEEEECCCCccchh----------HHHHhCCEEEEEecCCchHHHHH---HHhhhh-------hhhheEEeehhcccch
Confidence            789999999974421          12457999999987444443332   222111       2334899999998864


Q ss_pred             H---hHHHHHHHHHHhc---------CCCccccCccCCHHHHHHHHhhc
Q 021615          238 R---DRLQSLTEEILKI---------GCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       238 ~---~~~~~l~~~l~~~---------g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                      .   ....++...+...         .+..+|+.++.|++++++.+...
T Consensus       210 ~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~  258 (332)
T PRK09435        210 TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDH  258 (332)
T ss_pred             hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3   2334444444421         23348999999999999988764

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.05  E-value=3e-10  Score=95.93  Aligned_cols=56  Identities=32%  Similarity=0.552  Sum_probs=45.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL  167 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~  167 (310)
                      ...+|+++|.||+|||||+|+|++.+. .+++.|++|...+...+.           ..+.++||||+
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-----------~~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-----------KKVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-----------CCEEEEECcCC
Confidence            346899999999999999999999876 458999999875544431           26899999996

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.00  E-value=3.8e-09  Score=99.18  Aligned_cols=128  Identities=20%  Similarity=0.276  Sum_probs=84.6

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCC------C----------CCCCCceeeccceEeeCCCCCCCccCCCceEEEeC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPD------I----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL  164 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~------i----------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~Dt  164 (310)
                      .+.+|+++-.-.-|||||+..|+.....      +          ...-+.|+-..-..+.+..        .++.|+||
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~--------~~INIvDT   75 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG--------TRINIVDT   75 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC--------eEEEEecC
Confidence            4567999999999999999999865311      1          1123344432222333332        28999999


Q ss_pred             CCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHH
Q 021615          165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQ  242 (310)
Q Consensus       165 PG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~  242 (310)
                      ||+-++-.       ...+-+.-.|.++++||+.+....+.--.+.+.|..      +.+-|+|+||+|++.+.  +..+
T Consensus        76 PGHADFGG-------EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~------gL~PIVVvNKiDrp~Arp~~Vvd  142 (603)
T COG1217          76 PGHADFGG-------EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL------GLKPIVVINKIDRPDARPDEVVD  142 (603)
T ss_pred             CCcCCccc-------hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHc------CCCcEEEEeCCCCCCCCHHHHHH
Confidence            99987632       333445578999999999997666655455566653      55668889999998763  2334


Q ss_pred             HHHHHHH
Q 021615          243 SLTEEIL  249 (310)
Q Consensus       243 ~l~~~l~  249 (310)
                      +..+.+-
T Consensus       143 ~vfDLf~  149 (603)
T COG1217         143 EVFDLFV  149 (603)
T ss_pred             HHHHHHH
Confidence            4444443

>cd01858 NGP_1 NGP-1

Probab=98.99  E-value=7e-10  Score=92.14  Aligned_cols=54  Identities=31%  Similarity=0.485  Sum_probs=42.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL  167 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~  167 (310)
                      .+|+++|.||||||||+|+|.+... .+++.+++|........           ...+.++||||+
T Consensus       103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~liDtPGi  157 (157)
T cd01858         103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-----------MKRIYLIDCPGV  157 (157)
T ss_pred             eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-----------CCCEEEEECcCC
Confidence            4689999999999999999999765 45889999986443221           125899999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=4.6e-09  Score=103.10  Aligned_cols=159  Identities=22%  Similarity=0.228  Sum_probs=102.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC------C---CCccC-CCceEEEeCCCCCccc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT------L---GAEKY-SSEATLADLPGLIEGA  171 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~------~---~~~~~-~~~~~i~DtPG~~~~~  171 (310)
                      .+-++|+|.-.+|||-|+..|.+.++.-+.+.+.|.......++....      +   ....+ -+.+.++||||+..+.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            466899999999999999999998876677777776432222221100      0   00001 1368999999998774


Q ss_pred             cCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc--------------
Q 021615          172 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--------------  237 (310)
Q Consensus       172 ~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--------------  237 (310)
                      .+    ..   +-...||++|+|+|+..+-..+.++.+ +.|+.     .+.|+||.+||+|++-.              
T Consensus       555 nl----Rs---rgsslC~~aIlvvdImhGlepqtiESi-~lLR~-----rktpFivALNKiDRLYgwk~~p~~~i~~~lk  621 (1064)
T KOG1144|consen  555 NL----RS---RGSSLCDLAILVVDIMHGLEPQTIESI-NLLRM-----RKTPFIVALNKIDRLYGWKSCPNAPIVEALK  621 (1064)
T ss_pred             hh----hh---ccccccceEEEEeehhccCCcchhHHH-HHHHh-----cCCCeEEeehhhhhhcccccCCCchHHHHHH
Confidence            42    11   223479999999999886555555544 33443     47899999999998631              


Q ss_pred             ---Hh-------HHHHHHHHHHhcC-----------------CCccccCccCCHHHHHHHHhh
Q 021615          238 ---RD-------RLQSLTEEILKIG-----------------CDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       238 ---~~-------~~~~l~~~l~~~g-----------------~~~~sa~~~~gi~~l~~~l~~  273 (310)
                         ..       ++..+.-.|...|                 +.++||.+|+|+.+++.+|..
T Consensus       622 kQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~  684 (1064)
T KOG1144|consen  622 KQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQ  684 (1064)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHH
Confidence               01       1222222232222                 334799999999999988654

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.95  E-value=4.8e-09  Score=96.47  Aligned_cols=99  Identities=17%  Similarity=0.157  Sum_probs=61.1

Q ss_pred             CceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                      ..+.|+||||.....          ...+..+|.++++.+....   +++......+       .++|.++|+||+|+..
T Consensus       127 ~D~viidT~G~~~~e----------~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-------~~~~~ivv~NK~Dl~~  186 (300)
T TIGR00750       127 YDVIIVETVGVGQSE----------VDIANMADTFVVVTIPGTG---DDLQGIKAGL-------MEIADIYVVNKADGEG  186 (300)
T ss_pred             CCEEEEeCCCCchhh----------hHHHHhhceEEEEecCCcc---HHHHHHHHHH-------hhhccEEEEEcccccc
Confidence            378999999975321          1234568888888654432   3333332223       3688899999999986


Q ss_pred             cHhHH---HHHH---HHH-Hh---c--CCCccccCccCCHHHHHHHHhhcc
Q 021615          237 ARDRL---QSLT---EEI-LK---I--GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       237 ~~~~~---~~l~---~~l-~~---~--g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ..+..   ..+.   ..+ ..   .  .+..+|++++.|+++++..+....
T Consensus       187 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       187 ATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             hhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            54211   1111   111 11   1  244589999999999999887653

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.93  E-value=1.6e-08  Score=92.99  Aligned_cols=146  Identities=17%  Similarity=0.162  Sum_probs=84.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCC----CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc---
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIA----DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK---  175 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~----~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~---  175 (310)
                      +.|.++|++|.|||||+|.|++....-.    +.......+.+-.......+....+.-.++++||||+.++.....   
T Consensus        24 f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we  103 (373)
T COG5019          24 FTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWE  103 (373)
T ss_pred             eEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHH
Confidence            5799999999999999999998732111    111111111111111111111112233799999999988644321   


Q ss_pred             ----hHHHHHHHHh--------------hhcCEEEEecccCC-CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          176 ----GLGRNFLRHL--------------RRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       176 ----~l~~~~~~~l--------------~~~d~il~VvD~s~-~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                          .+..+|..++              .+.++++|.+-.+. .-..-+++.+ +.|..      .+.+|-|+.|+|...
T Consensus       104 ~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~M-k~ls~------~vNlIPVI~KaD~lT  176 (373)
T COG5019         104 PIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAM-KRLSK------RVNLIPVIAKADTLT  176 (373)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHH-HHHhc------ccCeeeeeeccccCC
Confidence                2233333333              25699999998765 3334455443 45553      467899999999998


Q ss_pred             cHhH---HHHHHHHHHhcCCCc
Q 021615          237 ARDR---LQSLTEEILKIGCDK  255 (310)
Q Consensus       237 ~~~~---~~~l~~~l~~~g~~~  255 (310)
                      .++.   .+.+++.+....+..
T Consensus       177 ~~El~~~K~~I~~~i~~~nI~v  198 (373)
T COG5019         177 DDELAEFKERIREDLEQYNIPV  198 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhCCce
Confidence            7542   234444555544443

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.93  E-value=1.6e-08  Score=87.75  Aligned_cols=141  Identities=21%  Similarity=0.246  Sum_probs=80.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCC-------C-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPD-------I-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG  174 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~-------i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~  174 (310)
                      ++|.+||.+|.|||||+|.|+.++..       . .++|.||..-....+-..   .+.+  -+++++||||+.+.....
T Consensus        47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE---~gVk--lkltviDTPGfGDqInN~  121 (336)
T KOG1547|consen   47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEE---KGVK--LKLTVIDTPGFGDQINND  121 (336)
T ss_pred             eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeee---cceE--EEEEEecCCCcccccCcc
Confidence            57999999999999999999876421       1 245555432222222111   1112  278999999998754322


Q ss_pred             c-------hHHHHHHHHh--------------hhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 021615          175 K-------GLGRNFLRHL--------------RRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKI  232 (310)
Q Consensus       175 ~-------~l~~~~~~~l--------------~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~  232 (310)
                      .       .+..++.+++              .+.++++|.+..+... ..-+++.+ +.|.+      -..++-|+-|+
T Consensus       122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDiefl-krLt~------vvNvvPVIaka  194 (336)
T KOG1547|consen  122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFL-KRLTE------VVNVVPVIAKA  194 (336)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHH-HHHhh------hheeeeeEeec
Confidence            1       2223332332              2468899999887632 22233322 33332      24578889999


Q ss_pred             CCCCcHhH---HHHHHHHHHhcCCCc
Q 021615          233 DLPEARDR---LQSLTEEILKIGCDK  255 (310)
Q Consensus       233 Dl~~~~~~---~~~l~~~l~~~g~~~  255 (310)
                      |-..-++.   .+.+.+.+...++..
T Consensus       195 DtlTleEr~~FkqrI~~el~~~~i~v  220 (336)
T KOG1547|consen  195 DTLTLEERSAFKQRIRKELEKHGIDV  220 (336)
T ss_pred             ccccHHHHHHHHHHHHHHHHhcCccc
Confidence            98765432   234455555555543

>cd01855 YqeH YqeH

Probab=98.91  E-value=2.4e-09  Score=91.77  Aligned_cols=55  Identities=36%  Similarity=0.363  Sum_probs=44.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCC---------CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAK---------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL  167 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~---------~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~  167 (310)
                      ..+++++|.||+|||||+|+|.+..         +.++..|+||..+....+..           .+.++||||+
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-----------~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-----------GKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-----------CCEEEeCcCC
Confidence            3579999999999999999999753         34578899999877655521           5799999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=7.6e-10  Score=92.38  Aligned_cols=160  Identities=14%  Similarity=0.166  Sum_probs=104.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCce-eeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT-~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ..++++++|..+.||||++++..-.+..- .|+.|+ ...+.  +......+  .  -+|.+|||.|++.......    
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~-~y~at~Gv~~~p--l~f~tn~g--~--irf~~wdtagqEk~gglrd----   77 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEK-TYPATLGVEVHP--LLFDTNRG--Q--IRFNVWDTAGQEKKGGLRD----   77 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhccccee-cccCcceeEEee--eeeecccC--c--EEEEeeecccceeeccccc----
Confidence            46789999999999999999987554222 111111 11111  11111111  1  2789999999987632211    


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHH-HHHHhcCCCcccc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLT-EEILKIGCDKVTS  258 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~-~~l~~~g~~~~sa  258 (310)
                      .  .++ ...+.++++|..+..+......|.+.+.....   +.|+++++||.|........+.+. -.-..+...++|+
T Consensus        78 g--yyI-~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~---NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSa  151 (216)
T KOG0096|consen   78 G--YYI-QGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE---NIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISA  151 (216)
T ss_pred             c--cEE-ecceeEEEeeeeehhhhhcchHHHHHHHHHhc---CCCeeeeccceeccccccccccceeeecccceeEEeec
Confidence            1  122 35677888999998888888888888877553   589999999999876531111110 1112456777999


Q ss_pred             CccCCHHHHHHHHhhccCC
Q 021615          259 ETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~~~  277 (310)
                      +...+++..|-+|+....-
T Consensus       152 ksn~NfekPFl~LarKl~G  170 (216)
T KOG0096|consen  152 KSNYNFERPFLWLARKLTG  170 (216)
T ss_pred             ccccccccchHHHhhhhcC
Confidence            9999999999999887654

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.91  E-value=1.6e-09  Score=100.34  Aligned_cols=59  Identities=37%  Similarity=0.455  Sum_probs=48.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  171 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~  171 (310)
                      ..+|++||.||||||||||+|.+.... ++++|++|...+...+.           ..+.++||||++-..
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-----------~~i~LlDtPGii~~~  191 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-----------DGIYLLDTPGIIPPK  191 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-----------CCeEEecCCCcCCCC
Confidence            356999999999999999999999864 49999999976655442           268999999997653

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=8.7e-09  Score=96.22  Aligned_cols=131  Identities=22%  Similarity=0.254  Sum_probs=85.3

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC---------CCCCCce-------------eeccceEeeCCCCCCCccC
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---------ADYPFTT-------------LMPNLGRLDGDPTLGAEKY  155 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i---------~~~~~tT-------------~~~~~~~v~~~~~~~~~~~  155 (310)
                      +...-.+.+||-.|-||||||...|+-.-..|         ....+++             .....-++++.+       
T Consensus         8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~-------   80 (528)
T COG4108           8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD-------   80 (528)
T ss_pred             HHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC-------
Confidence            34445669999999999999999875221111         1111122             111222233332       


Q ss_pred             CCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                       ..+++.||||+.+++.       ..++.+..+|.+|+|+|+..+...+..+ +.+..+.     .+.|++-++||+|+.
T Consensus        81 -~~iNLLDTPGHeDFSE-------DTYRtLtAvDsAvMVIDaAKGiE~qT~K-LfeVcrl-----R~iPI~TFiNKlDR~  146 (528)
T COG4108          81 -CLVNLLDTPGHEDFSE-------DTYRTLTAVDSAVMVIDAAKGIEPQTLK-LFEVCRL-----RDIPIFTFINKLDRE  146 (528)
T ss_pred             -eEEeccCCCCccccch-------hHHHHHHhhheeeEEEecccCccHHHHH-HHHHHhh-----cCCceEEEeeccccc
Confidence             2789999999988743       5667788899999999999876666544 3333332     589999999999997


Q ss_pred             CcH--hHHHHHHHHHH
Q 021615          236 EAR--DRLQSLTEEIL  249 (310)
Q Consensus       236 ~~~--~~~~~l~~~l~  249 (310)
                      ..+  +.++++.+.|.
T Consensus       147 ~rdP~ELLdEiE~~L~  162 (528)
T COG4108         147 GRDPLELLDEIEEELG  162 (528)
T ss_pred             cCChHHHHHHHHHHhC
Confidence            653  34455554443

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.88  E-value=5.5e-09  Score=95.47  Aligned_cols=61  Identities=26%  Similarity=0.350  Sum_probs=49.0

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH  172 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~  172 (310)
                      ...+|+++|.||||||||+|+|++.+. .+++.|++|.......+  .         ..+.++||||+.....
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~--~---------~~~~l~DtPGi~~~~~  181 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL--G---------KGLELLDTPGILWPKL  181 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe--C---------CcEEEEECCCcCCCCC
Confidence            346799999999999999999999875 56899999998654332  1         2689999999976543

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.85  E-value=5.5e-09  Score=86.59  Aligned_cols=56  Identities=32%  Similarity=0.534  Sum_probs=45.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL  167 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~  167 (310)
                      ...+++++|.||+|||||+|+|++... .+++.++||..+....+.           ..+.++||||+
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-----------NKIKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-----------CCEEEEECCCC
Confidence            456799999999999999999998774 468889999987654432           26899999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=8.1e-08  Score=87.37  Aligned_cols=159  Identities=22%  Similarity=0.292  Sum_probs=99.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCC-------CCCCCCceeeccceEeeCC--CCC-CCccCCCceEEEeCCCCCcccc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPD-------IADYPFTTLMPNLGRLDGD--PTL-GAEKYSSEATLADLPGLIEGAH  172 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~-------i~~~~~tT~~~~~~~v~~~--~~~-~~~~~~~~~~i~DtPG~~~~~~  172 (310)
                      .+++++|.-.+|||||.++|+.....       .+...+.|++--...+...  ..+ ....+  .+.++|+||+     
T Consensus         8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~l--q~tlvDCPGH-----   80 (522)
T KOG0461|consen    8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQL--QFTLVDCPGH-----   80 (522)
T ss_pred             eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccc--eeEEEeCCCc-----
Confidence            57999999999999999999754211       1222334443333222211  111 11222  6899999998     


Q ss_pred             CCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHH-HHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHH----HH
Q 021615          173 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVK-EELRMYNPDYLERPFIVVLNKIDLPEARD---RLQ----SL  244 (310)
Q Consensus       173 ~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~-~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~----~l  244 (310)
                        .++.+.......-.|+.++|+|+......+..+.+. .++       .-+..++|+||+|...+..   .++    .+
T Consensus        81 --asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-------~c~klvvvinkid~lpE~qr~ski~k~~kk~  151 (522)
T KOG0461|consen   81 --ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-------LCKKLVVVINKIDVLPENQRASKIEKSAKKV  151 (522)
T ss_pred             --HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-------hccceEEEEeccccccchhhhhHHHHHHHHH
Confidence              566666666666679999999998765555444332 222       2466789999999876522   222    33


Q ss_pred             HHHHHhcCC------CccccCcc----CCHHHHHHHHhhccCC
Q 021615          245 TEEILKIGC------DKVTSETE----LSSEDAVKSLSTEGGE  277 (310)
Q Consensus       245 ~~~l~~~g~------~~~sa~~~----~gi~~l~~~l~~~~~~  277 (310)
                      ++-++..++      .++|+..|    +++.++...|.+..-+
T Consensus       152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            344444443      34789999    7788888777655433

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.84  E-value=5.9e-09  Score=89.87  Aligned_cols=122  Identities=20%  Similarity=0.170  Sum_probs=85.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .||.++|.+|+||||+-..++....+- ...++.|++...+.+.+-+.       --+.+||+.|+..+       -+.+
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-------l~LnlwDcGgqe~f-------men~   70 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-------LVLNLWDCGGQEEF-------MENY   70 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-------heeehhccCCcHHH-------HHHH
Confidence            579999999999999988887554322 44567777766666544332       15789999998643       1122


Q ss_pred             HH-----HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615          182 LR-----HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR  238 (310)
Q Consensus       182 ~~-----~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~  238 (310)
                      ++     -++..++++||+|++..+...++....+.|+.+...-....+.+.+.|+|+....
T Consensus        71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d  132 (295)
T KOG3886|consen   71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED  132 (295)
T ss_pred             HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence            22     2467899999999998777777766666555444333467789999999998653

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.84  E-value=1.7e-08  Score=91.97  Aligned_cols=148  Identities=17%  Similarity=0.176  Sum_probs=88.5

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-----------CC----------------------CCCceeeccceEeeC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-----------AD----------------------YPFTTLMPNLGRLDG  146 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-----------~~----------------------~~~tT~~~~~~~v~~  146 (310)
                      +.+.++.-+|.---||||||-+|+.....+           +.                      ..+.|++.....+..
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            445668889999999999999997542111           00                      112222221111111


Q ss_pred             CCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEE
Q 021615          147 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI  226 (310)
Q Consensus       147 ~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~i  226 (310)
                      .        .++|+|+||||+.++       .+.+..-...||+.+++||+......+..+.  ..+...   +.=+.++
T Consensus        84 ~--------KRkFIiADTPGHeQY-------TRNMaTGASTadlAIlLVDAR~Gvl~QTrRH--s~I~sL---LGIrhvv  143 (431)
T COG2895          84 E--------KRKFIIADTPGHEQY-------TRNMATGASTADLAILLVDARKGVLEQTRRH--SFIASL---LGIRHVV  143 (431)
T ss_pred             c--------cceEEEecCCcHHHH-------hhhhhcccccccEEEEEEecchhhHHHhHHH--HHHHHH---hCCcEEE
Confidence            1        358999999999543       3344444578999999999976543333221  112211   0135688


Q ss_pred             EEEeCCCCCCc-HhHHHHHHHHH----HhcCC-----CccccCccCCHHHH
Q 021615          227 VVLNKIDLPEA-RDRLQSLTEEI----LKIGC-----DKVTSETELSSEDA  267 (310)
Q Consensus       227 vv~NK~Dl~~~-~~~~~~l~~~l----~~~g~-----~~~sa~~~~gi~~l  267 (310)
                      +.+||+|+.+- ++..+++...+    .++++     .++||..|+++...
T Consensus       144 vAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~  194 (431)
T COG2895         144 VAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSK  194 (431)
T ss_pred             EEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccccc
Confidence            99999999873 34455555443    34443     34788888876544

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.83  E-value=6.4e-09  Score=84.84  Aligned_cols=54  Identities=39%  Similarity=0.545  Sum_probs=42.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI  168 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~  168 (310)
                      +++++|.+|+|||||+|+|.+.+. .++..+++|.......+  +         ..+.+|||||+.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~i~DtpG~~  139 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--T---------PTITLCDCPGLV  139 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--C---------CCEEEEECCCcC
Confidence            799999999999999999998874 45777777776543333  1         258999999985

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=7.6e-08  Score=90.31  Aligned_cols=151  Identities=20%  Similarity=0.107  Sum_probs=105.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      -|+..|.---|||||+.++++.....   ...-++|.+......+...        ..+.++|+||+.++       ...
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--------~~~~fIDvpgh~~~-------i~~   66 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--------GVMGFIDVPGHPDF-------ISN   66 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--------CceEEeeCCCcHHH-------HHH
Confidence            37788999999999999999886443   3355777765554443322        26899999999654       335


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHHHHHHHHHH-----hcCCC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQSLTEEIL-----KIGCD  254 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~l~~~l~-----~~g~~  254 (310)
                      ....+...|..++|||+.+.-..+..+.+ ..|..+     +.+ .++|+||+|+.+.....+.+.+.+.     ...+.
T Consensus        67 miag~~~~d~alLvV~~deGl~~qtgEhL-~iLdll-----gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~  140 (447)
T COG3276          67 LLAGLGGIDYALLVVAADEGLMAQTGEHL-LILDLL-----GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIF  140 (447)
T ss_pred             HHhhhcCCceEEEEEeCccCcchhhHHHH-HHHHhc-----CCCceEEEEeccccccHHHHHHHHHHHHhhccccccccc
Confidence            55666778999999999876666655544 345543     444 5999999999975432222222222     34556


Q ss_pred             ccccCccCCHHHHHHHHhhcc
Q 021615          255 KVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .+|+.+++|++++-+.+....
T Consensus       141 ~~s~~~g~GI~~Lk~~l~~L~  161 (447)
T COG3276         141 KTSAKTGRGIEELKNELIDLL  161 (447)
T ss_pred             ccccccCCCHHHHHHHHHHhh
Confidence            689999999999999876655

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.83  E-value=9e-09  Score=93.52  Aligned_cols=58  Identities=29%  Similarity=0.410  Sum_probs=47.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCC-CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  170 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~-~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~  170 (310)
                      ..+|+++|.||+|||||+|+|++.. ..+++.|++|..+....+  .         ..+.++||||+...
T Consensus       118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~---------~~~~l~DtPG~~~~  176 (276)
T TIGR03596       118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL--S---------DGLELLDTPGILWP  176 (276)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe--C---------CCEEEEECCCcccC
Confidence            4679999999999999999999887 455889999987654333  1         26899999999654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.79  E-value=5.8e-08  Score=84.44  Aligned_cols=154  Identities=14%  Similarity=0.150  Sum_probs=84.3

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCC---CC--C-CCCCCceeecc--------ceEeeCCC--CCC----------Cc
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAK---PD--I-ADYPFTTLMPN--------LGRLDGDP--TLG----------AE  153 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~---~~--i-~~~~~tT~~~~--------~~~v~~~~--~~~----------~~  153 (310)
                      ...+.|+++|++|+|||||+++++...   ..  + ...++.+.+..        ...+....  ...          ..
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence            356789999999999999999997541   11  1 11111111110        00010000  000          00


Q ss_pred             cCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615          154 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  233 (310)
Q Consensus       154 ~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D  233 (310)
                      ..+..+.+++|.|......       .+ .  ...+..+.|+|+.+.+...     ......     ...|.++++||+|
T Consensus       100 ~~~~d~IiIEt~G~l~~~~-------~~-~--~~~~~~i~Vvd~~~~d~~~-----~~~~~~-----~~~a~iiv~NK~D  159 (207)
T TIGR00073       100 LDDIDLLFIENVGNLVCPA-------DF-D--LGEHMRVVLLSVTEGDDKP-----LKYPGM-----FKEADLIVINKAD  159 (207)
T ss_pred             cCCCCEEEEecCCCcCCCc-------cc-c--cccCeEEEEEecCcccchh-----hhhHhH-----HhhCCEEEEEHHH
Confidence            0023678899988322111       11 1  1245556788887543211     111111     2578899999999


Q ss_pred             CCCcH-hHHHHHHHHHHh----cCCCccccCccCCHHHHHHHHhh
Q 021615          234 LPEAR-DRLQSLTEEILK----IGCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       234 l~~~~-~~~~~l~~~l~~----~g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      +.+.. .....+.+.+.+    ..+..+|++++.|++++++.+..
T Consensus       160 l~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~  204 (207)
T TIGR00073       160 LAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEG  204 (207)
T ss_pred             ccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            97532 123344444443    34566899999999999999754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=98.79  E-value=2.8e-10  Score=94.64  Aligned_cols=164  Identities=16%  Similarity=0.136  Sum_probs=106.6

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      -+.++.|+|+-++||||++.+.+....... | -.|+  +-....+..++    .. .-++++||+.|+.++-.+..   
T Consensus        24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~-y-RAtIgvdfalkVl~wdd----~t-~vRlqLwdIagQerfg~mtr---   93 (229)
T KOG4423|consen   24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYH-Y-RATIGVDFALKVLQWDD----KT-IVRLQLWDIAGQERFGNMTR---   93 (229)
T ss_pred             hhhhhheeeeccccchhHHHHHHHHHHHHH-H-HHHHhHHHHHHHhccCh----HH-HHHHHHhcchhhhhhcceEE---
Confidence            457899999999999999999875431100 0 0011  11111111111    00 02688999999986643211   


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCcH-----hHHHHHHHHHHhc
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEAR-----DRLQSLTEEILKI  251 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~--~~~~~~p~ivv~NK~Dl~~~~-----~~~~~l~~~l~~~  251 (310)
                          -+.+.+.+..+|+|.++..+++....|.+++..-.  +.-.-.|+++..||||.....     .....+.+.-.-.
T Consensus        94 ----Vyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~  169 (229)
T KOG4423|consen   94 ----VYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFE  169 (229)
T ss_pred             ----EEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcc
Confidence                23457899999999999999998888988876432  222346789999999987532     1223333333334


Q ss_pred             CCCccccCccCCHHHHHHHHhhccCCc
Q 021615          252 GCDKVTSETELSSEDAVKSLSTEGGEA  278 (310)
Q Consensus       252 g~~~~sa~~~~gi~~l~~~l~~~~~~~  278 (310)
                      |+.++|+++..++++....|.+.....
T Consensus       170 gwtets~Kenkni~Ea~r~lVe~~lvn  196 (229)
T KOG4423|consen  170 GWTETSAKENKNIPEAQRELVEKILVN  196 (229)
T ss_pred             ceeeeccccccChhHHHHHHHHHHHhh
Confidence            788899999999999999887765443

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.79  E-value=1.2e-08  Score=96.22  Aligned_cols=118  Identities=20%  Similarity=0.243  Sum_probs=69.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCC------CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  175 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~------~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~  175 (310)
                      ..+|.+||.+|||||||+|+|++..      ..++++|+||+......+.           ..+.++||||+........
T Consensus       154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-----------~~~~l~DtPG~~~~~~~~~  222 (360)
T TIGR03597       154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-----------DGHSLYDTPGIINSHQMAH  222 (360)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-----------CCCEEEECCCCCChhHhhh
Confidence            4589999999999999999999854      3458899999976644431           1568999999976421111


Q ss_pred             hHHHHHHHHh---hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          176 GLGRNFLRHL---RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       176 ~l~~~~~~~l---~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                      -+...-+..+   .......+.+|....-....+..+ ..+.    . ....+.+.++|.+...
T Consensus       223 ~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~-d~~~----~-~~~~~~~~~~~~~~~h  280 (360)
T TIGR03597       223 YLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARF-DYLK----G-EKTSFTFYVSNELNIH  280 (360)
T ss_pred             hcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEE-EEec----C-CceEEEEEccCCceeE
Confidence            1111112222   334667777776542222111111 0111    0 2345677777777654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=4.7e-08  Score=94.24  Aligned_cols=148  Identities=21%  Similarity=0.246  Sum_probs=87.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCC---------------CCC--CC--------------CCceeeccceEeeCCCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKP---------------DIA--DY--------------PFTTLMPNLGRLDGDPT  149 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~---------------~i~--~~--------------~~tT~~~~~~~v~~~~~  149 (310)
                      .....+++|..++|||||+-+|+-.-.               ..+  .+              .+.|.+.....++..  
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~--  253 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK--  253 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC--
Confidence            445689999999999999999863210               011  11              111222111112211  


Q ss_pred             CCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC------cHHHHHHHHHHHHhcCCCCCCC
Q 021615          150 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLER  223 (310)
Q Consensus       150 ~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~------~~~~~~~~~~~l~~~~~~~~~~  223 (310)
                            ...++|+|+||+-++-.       ....-...+|+.++|+|++...      +..+.+.....|+.+    .-.
T Consensus       254 ------~~~~tliDaPGhkdFi~-------nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L----gi~  316 (603)
T KOG0458|consen  254 ------SKIVTLIDAPGHKDFIP-------NMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL----GIS  316 (603)
T ss_pred             ------ceeEEEecCCCccccch-------hhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc----Ccc
Confidence                  23789999999766532       3334456799999999998632      112222222233332    135


Q ss_pred             CEEEEEeCCCCCC-cHhHHHHHHHHHH-----hc-------CCCccccCccCCHHHH
Q 021615          224 PFIVVLNKIDLPE-ARDRLQSLTEEIL-----KI-------GCDKVTSETELSSEDA  267 (310)
Q Consensus       224 p~ivv~NK~Dl~~-~~~~~~~l~~~l~-----~~-------g~~~~sa~~~~gi~~l  267 (310)
                      .++|++||+|+.+ .+++++++...+.     .+       .|.++|...|+|+...
T Consensus       317 qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  317 QLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             eEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            6899999999985 3455665555443     33       4555889999887654

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.78  E-value=1.1e-08  Score=90.51  Aligned_cols=96  Identities=15%  Similarity=0.191  Sum_probs=63.6

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .++|+.|.|.....          ..-..-||.+++|+-....+..+.++.=.-|+          .=++|+||+|+..+
T Consensus       123 D~IiiETVGvGQsE----------~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi----------aDi~vVNKaD~~gA  182 (266)
T PF03308_consen  123 DVIIIETVGVGQSE----------VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI----------ADIFVVNKADRPGA  182 (266)
T ss_dssp             SEEEEEEESSSTHH----------HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-----------SEEEEE--SHHHH
T ss_pred             CEEEEeCCCCCccH----------HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh----------ccEEEEeCCChHHH
Confidence            57888888875431          23345789999999888777665544322222          33899999998777


Q ss_pred             HhHHHHHHHHHHhc-----C----CCccccCccCCHHHHHHHHhh
Q 021615          238 RDRLQSLTEEILKI-----G----CDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       238 ~~~~~~l~~~l~~~-----g----~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      +....++...+.-.     +    +..+|+..+.|++++.+.+.+
T Consensus       183 ~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~  227 (266)
T PF03308_consen  183 DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE  227 (266)
T ss_dssp             HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            66666777666532     1    222799999999999988755

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=7.4e-08  Score=86.94  Aligned_cols=165  Identities=18%  Similarity=0.185  Sum_probs=100.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC------------CCCCCceeec--c-----ceEeeCCCC--CCCccCCCceEE
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI------------ADYPFTTLMP--N-----LGRLDGDPT--LGAEKYSSEATL  161 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i------------~~~~~tT~~~--~-----~~~v~~~~~--~~~~~~~~~~~i  161 (310)
                      .+|++||.-.-|||||..+|+|-....            -.|.-+++..  .     .......+.  -....+-+.+.+
T Consensus        11 vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSf   90 (415)
T COG5257          11 VNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSF   90 (415)
T ss_pred             eEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEE
Confidence            579999999999999999999853111            1121111100  0     000000000  000022357899


Q ss_pred             EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--
Q 021615          162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--  239 (310)
Q Consensus       162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--  239 (310)
                      +|.||++       -+-..+++-..--|+.++|++++.+.+..+-..-+-.|...    .-+.+++|-||+|+...+.  
T Consensus        91 VDaPGHe-------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi----gik~iiIvQNKIDlV~~E~Al  159 (415)
T COG5257          91 VDAPGHE-------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII----GIKNIIIVQNKIDLVSRERAL  159 (415)
T ss_pred             eeCCchH-------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh----ccceEEEEecccceecHHHHH
Confidence            9999984       22223344334458999999998855433333222334432    2367899999999997643  


Q ss_pred             -HHHHHHHHHH-----hcCCCccccCccCCHHHHHHHHhhccCCc
Q 021615          240 -RLQSLTEEIL-----KIGCDKVTSETELSSEDAVKSLSTEGGEA  278 (310)
Q Consensus       240 -~~~~l~~~l~-----~~g~~~~sa~~~~gi~~l~~~l~~~~~~~  278 (310)
                       ..++++++++     ...+.++||..+.+++.+++++....-..
T Consensus       160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence             4455555554     33566799999999999999988766443

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=8.9e-08  Score=88.59  Aligned_cols=126  Identities=17%  Similarity=0.165  Sum_probs=77.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-------CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC-
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-  174 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~-  174 (310)
                      +.+.++|.+|.|||||+|.|+.....-       ...+..|.......+...+    ..+.-.++++||||+.+..... 
T Consensus        22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee----~g~~l~LtvidtPGfGD~vdns~   97 (366)
T KOG2655|consen   22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEE----NGVKLNLTVIDTPGFGDAVDNSN   97 (366)
T ss_pred             eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecC----CCeEEeeEEeccCCCcccccccc
Confidence            579999999999999999999873211       1111112222111221111    1222378999999998753321 


Q ss_pred             ------chHHHHHHHHh-------------hhcCEEEEecccCCC-CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615          175 ------KGLGRNFLRHL-------------RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  234 (310)
Q Consensus       175 ------~~l~~~~~~~l-------------~~~d~il~VvD~s~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl  234 (310)
                            ..+..+|..++             .+.++++|.+..... -..-++..+ +.+..      .+.+|-|+-|+|.
T Consensus        98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~M-k~l~~------~vNiIPVI~KaD~  170 (366)
T KOG2655|consen   98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFM-KKLSK------KVNLIPVIAKADT  170 (366)
T ss_pred             cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHH-HHHhc------cccccceeecccc
Confidence                  22334444443             267999999998764 334444433 44442      5788999999999


Q ss_pred             CCcHh
Q 021615          235 PEARD  239 (310)
Q Consensus       235 ~~~~~  239 (310)
                      ....+
T Consensus       171 lT~~E  175 (366)
T KOG2655|consen  171 LTKDE  175 (366)
T ss_pred             CCHHH
Confidence            98755

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=1.9e-08  Score=97.96  Aligned_cols=119  Identities=28%  Similarity=0.365  Sum_probs=80.6

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCC-CCC-----CCCCCceeec-----------cceEeeCCCCCCCccCCCceEEEe
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAK-PDI-----ADYPFTTLMP-----------NLGRLDGDPTLGAEKYSSEATLAD  163 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~-~~i-----~~~~~tT~~~-----------~~~~v~~~~~~~~~~~~~~~~i~D  163 (310)
                      .+..|+++|+-.+|||+|+..|.... +..     .+.-+|+...           +..++-... ..+.  ..-++++|
T Consensus       127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D-~~~K--S~l~nilD  203 (971)
T KOG0468|consen  127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSD-SKGK--SYLMNILD  203 (971)
T ss_pred             eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEec-CcCc--eeeeeeec
Confidence            45679999999999999999998653 111     2222222211           111111111 1111  22689999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      |||+..+..       .....++.+|++++|+|+.+...+..-+.+...+..      +.|+.+|+||+|++
T Consensus       204 TPGHVnF~D-------E~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~------~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  204 TPGHVNFSD-------ETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN------RLPIVVVINKVDRL  262 (971)
T ss_pred             CCCcccchH-------HHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhc------cCcEEEEEehhHHH
Confidence            999987743       445667789999999999998888776666666653      78999999999975

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.73  E-value=1.8e-07  Score=83.94  Aligned_cols=96  Identities=13%  Similarity=0.150  Sum_probs=63.3

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .++|+.|.|.....          ..-..-+|.+++|.=....+..+-++.=.-|          .-=++|+||.|+..+
T Consensus       145 DvIIVETVGvGQse----------v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE----------iaDi~vINKaD~~~A  204 (323)
T COG1703         145 DVIIVETVGVGQSE----------VDIANMADTFLVVMIPGAGDDLQGIKAGIME----------IADIIVINKADRKGA  204 (323)
T ss_pred             CEEEEEecCCCcch----------hHHhhhcceEEEEecCCCCcHHHHHHhhhhh----------hhheeeEeccChhhH
Confidence            57888888875431          1223468999998877767766554432222          333899999998877


Q ss_pred             HhHHHHHHHHHHhc-------CCC----ccccCccCCHHHHHHHHhh
Q 021615          238 RDRLQSLTEEILKI-------GCD----KVTSETELSSEDAVKSLST  273 (310)
Q Consensus       238 ~~~~~~l~~~l~~~-------g~~----~~sa~~~~gi~~l~~~l~~  273 (310)
                      +....++...+...       +|.    .+++..++|+.++++.+..
T Consensus       205 ~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~  251 (323)
T COG1703         205 EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIED  251 (323)
T ss_pred             HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHH
Confidence            55455555444422       232    3899999999999987654

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=1.1e-07  Score=84.97  Aligned_cols=133  Identities=22%  Similarity=0.252  Sum_probs=87.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCC-----------CC-----CCCCCceeeccceEeeCCCCCCCccCCCceEEEeC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKP-----------DI-----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL  164 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~-----------~i-----~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~Dt  164 (310)
                      .-.+|+.+|.-+-|||||..+|+..-.           .+     ...-+.|+.+....++..        ++.+..+|+
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~--------~rhyahVDc   82 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA--------NRHYAHVDC   82 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC--------CceEEeccC
Confidence            345799999999999999999974311           01     112345554444333332        236889999


Q ss_pred             CCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHH--
Q 021615          165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL--  241 (310)
Q Consensus       165 PG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~--  241 (310)
                      ||+-++       .+....-..+.|..|+|+.+.+....+..+.++  |.+.    .+.| +++++||+|+.+..+.+  
T Consensus        83 PGHaDY-------vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--larq----vGvp~ivvflnK~Dmvdd~ellel  149 (394)
T COG0050          83 PGHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LARQ----VGVPYIVVFLNKVDMVDDEELLEL  149 (394)
T ss_pred             CChHHH-------HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhhh----cCCcEEEEEEecccccCcHHHHHH
Confidence            999554       334444456789999999999866555544332  2111    3676 66788999999865543  


Q ss_pred             --HHHHHHHHhcCCC
Q 021615          242 --QSLTEEILKIGCD  254 (310)
Q Consensus       242 --~~l~~~l~~~g~~  254 (310)
                        .++++.|..++++
T Consensus       150 VemEvreLLs~y~f~  164 (394)
T COG0050         150 VEMEVRELLSEYGFP  164 (394)
T ss_pred             HHHHHHHHHHHcCCC
Confidence              3566677778877

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.72  E-value=9.5e-09  Score=97.66  Aligned_cols=60  Identities=33%  Similarity=0.429  Sum_probs=48.8

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCC-CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  170 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~-~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~  170 (310)
                      +....||+||+|||||||+||+|.|.+ +.++..|+.|.+.+...+.           ..+.+.|+||++=.
T Consensus       312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-----------~~v~LCDCPGLVfP  372 (562)
T KOG1424|consen  312 KDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-----------PSVCLCDCPGLVFP  372 (562)
T ss_pred             CceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-----------CCceecCCCCcccc
Confidence            335789999999999999999999987 5669999999876654443           26899999998743

>cd01856 YlqF YlqF

Probab=98.70  E-value=3.2e-08  Score=83.38  Aligned_cols=55  Identities=29%  Similarity=0.385  Sum_probs=44.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL  167 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~  167 (310)
                      ..+++++|.+|+|||||+|+|.+... .+++.+++|.......+.           ..+.++||||+
T Consensus       115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-----------~~~~~iDtpG~  170 (171)
T cd01856         115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-----------PGIYLLDTPGI  170 (171)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-----------CCEEEEECCCC
Confidence            46899999999999999999998764 457888899876554432           16899999997

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.69  E-value=1.1e-07  Score=83.83  Aligned_cols=92  Identities=20%  Similarity=0.018  Sum_probs=58.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC--CCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA--KPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~--~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      ..-|+++|++++|||||+|.|++.  ...+ .....||............   ..  ...+.++||||+.+..... ...
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~---~~--~~~v~~lDteG~~~~~~~~-~~~   80 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL---GK--EHAVLLLDTEGTDGRERGE-FED   80 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC---CC--cceEEEEecCCcCccccCc-hhh
Confidence            345899999999999999999998  5444 3445666644433332210   00  1379999999998653321 011


Q ss_pred             HHHHHHhh--hcCEEEEecccCC
Q 021615          179 RNFLRHLR--RTRLLVHVIDAAA  199 (310)
Q Consensus       179 ~~~~~~l~--~~d~il~VvD~s~  199 (310)
                      ...+..+.  -+++++|.++...
T Consensus        81 ~~~~~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          81 DARLFALATLLSSVLIYNSWETI  103 (224)
T ss_pred             hhHHHHHHHHHhCEEEEeccCcc
Confidence            22223333  3899999998865

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=98.69  E-value=2.4e-08  Score=80.83  Aligned_cols=156  Identities=16%  Similarity=0.172  Sum_probs=98.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ..+|+++|.+..|||||+-...+.....  ....+.........+...        .-.+.+||.-|+.++..+      
T Consensus        20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t--------~IsfSIwdlgG~~~~~n~------   85 (205)
T KOG1673|consen   20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGT--------DISFSIWDLGGQREFINM------   85 (205)
T ss_pred             EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecce--------EEEEEEEecCCcHhhhcc------
Confidence            3579999999999999999988765321  000000000001111111        116899999998654221      


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc--HhHHHHHHH---HH-H--hc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQSLTE---EI-L--KI  251 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~l~~---~l-~--~~  251 (310)
                       .--....+-+++|++|.+++.+...+..|.++.+.+..  ...| |+|++|-|..-.  .+..+.+..   .. +  +.
T Consensus        86 -lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk--tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA  161 (205)
T KOG1673|consen   86 -LPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK--TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNA  161 (205)
T ss_pred             -CceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC--ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence             10112456789999999999999999999988876643  4566 567999987421  111122221   11 1  34


Q ss_pred             CCCccccCccCCHHHHHHHHhhcc
Q 021615          252 GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       252 g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .+..+|+....++...|..+.+..
T Consensus       162 sL~F~Sts~sINv~KIFK~vlAkl  185 (205)
T KOG1673|consen  162 SLFFCSTSHSINVQKIFKIVLAKL  185 (205)
T ss_pred             cEEEeeccccccHHHHHHHHHHHH
Confidence            677799999999999998876654

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.67  E-value=1.2e-07  Score=84.11  Aligned_cols=157  Identities=18%  Similarity=0.139  Sum_probs=92.0

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc---ccC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG---AHL  173 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~---~~~  173 (310)
                      ...+.++++|.+|+|||||+|.++..+...   ...++-|...+...+           +..+.++|.||+...   ...
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-----------~~~~~~vDlPG~~~a~y~~~~  202 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-----------GKSWYEVDLPGYGRAGYGFEL  202 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-----------cceEEEEecCCcccccCCccC
Confidence            345789999999999999999999775322   225555554444333           237999999994321   001


Q ss_pred             Cch---HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-----HHHHHH
Q 021615          174 GKG---LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLT  245 (310)
Q Consensus       174 ~~~---l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----~~~~l~  245 (310)
                      .+.   +...++-.-+.--.+.+++|++.+...-+...+ +.+.+     .++|+.+|+||||......     ....+.
T Consensus       203 ~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i-~~~ge-----~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~  276 (320)
T KOG2486|consen  203 PADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEI-AWLGE-----NNVPMTSVFTKCDKQKKVKRTGKKPGLNIK  276 (320)
T ss_pred             cchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHH-HHHhh-----cCCCeEEeeehhhhhhhccccccCccccce
Confidence            122   223332222333445677888875444333322 33444     4799999999999864311     011111


Q ss_pred             HHHH---------hcCCCccccCccCCHHHHHHHHhh
Q 021615          246 EEIL---------KIGCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       246 ~~l~---------~~g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      ..+.         .+.|..+|+-+..|+..+.-.++.
T Consensus       277 ~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  277 INFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             eehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence            1111         234556888888888887765543

>PRK13796 GTPase YqeH; Provisional

Probab=98.66  E-value=2.6e-08  Score=94.00  Aligned_cols=58  Identities=38%  Similarity=0.418  Sum_probs=44.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCC------CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  170 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~------~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~  170 (310)
                      ..++.+||.||||||||+|+|.+..      ..+++.|+||+......+.           ....++||||+...
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~-----------~~~~l~DTPGi~~~  223 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD-----------DGSFLYDTPGIIHR  223 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC-----------CCcEEEECCCcccc
Confidence            3579999999999999999998542      2348899999976543331           14589999999743

>TIGR00101 ureG urease accessory protein UreG

Probab=98.66  E-value=2.7e-07  Score=79.78  Aligned_cols=98  Identities=18%  Similarity=0.153  Sum_probs=59.1

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      ..++++|.|..-.    ..+    ...  -+|.++.|+|+.+.......  ....+        ...-++++||+|+.+.
T Consensus        93 D~iiIEt~G~~l~----~~~----~~~--l~~~~i~vvD~~~~~~~~~~--~~~qi--------~~ad~~~~~k~d~~~~  152 (199)
T TIGR00101        93 EMVFIESGGDNLS----ATF----SPE--LADLTIFVIDVAAGDKIPRK--GGPGI--------TRSDLLVINKIDLAPM  152 (199)
T ss_pred             CEEEEECCCCCcc----ccc----chh--hhCcEEEEEEcchhhhhhhh--hHhHh--------hhccEEEEEhhhcccc
Confidence            5678888884211    111    111  25789999999865442210  11111        2223889999999852


Q ss_pred             -HhHHHHHHHHHHh----cCCCccccCccCCHHHHHHHHhhcc
Q 021615          238 -RDRLQSLTEEILK----IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       238 -~~~~~~l~~~l~~----~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                       ....+.+.+.++.    ..+..+|++++.|++++++++....
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       153 VGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             ccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence             1223344444443    3566699999999999999987543

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.58  E-value=8.8e-08  Score=89.59  Aligned_cols=67  Identities=25%  Similarity=0.277  Sum_probs=44.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC-CCCCCC-------CceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC-
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKP-DIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-  174 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~-~i~~~~-------~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~-  174 (310)
                      .++|+|.||||||||+|+|++... .+++.+       .||.......+..           ...++||||+.+..-.. 
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-----------~~~liDTPGir~~~l~~~  275 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-----------GGDLIDSPGVREFGLWHL  275 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-----------CCEEEECCCCCcccCCCC
Confidence            479999999999999999998753 233333       2565544444421           34699999998764422 


Q ss_pred             --chHHHHH
Q 021615          175 --KGLGRNF  181 (310)
Q Consensus       175 --~~l~~~~  181 (310)
                        .++...|
T Consensus       276 ~~~~l~~~F  284 (347)
T PRK12288        276 EPEQVTQGF  284 (347)
T ss_pred             CHHHHHHhh
Confidence              3455444

>cd01859 MJ1464 MJ1464

Probab=98.56  E-value=1.4e-07  Score=78.02  Aligned_cols=55  Identities=33%  Similarity=0.485  Sum_probs=40.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL  167 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~  167 (310)
                      ..+++++|.+|+|||||+|+|.+.... +++.+++|........  +         ..+.+|||||+
T Consensus       101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~--~---------~~~~~~DtpGi  156 (156)
T cd01859         101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI--T---------SKIYLLDTPGV  156 (156)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc--C---------CCEEEEECcCC
Confidence            457999999999999999999976543 3667777754332211  1         26899999995

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.54  E-value=4.1e-08  Score=88.96  Aligned_cols=52  Identities=13%  Similarity=0.111  Sum_probs=38.0

Q ss_pred             CCCEEEEEeCCCCCCc-HhHHHHHHHHHHhc----CCCccccCccCCHHHHHHHHhh
Q 021615          222 ERPFIVVLNKIDLPEA-RDRLQSLTEEILKI----GCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       222 ~~p~ivv~NK~Dl~~~-~~~~~~l~~~l~~~----g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      ..+-++|+||+|+.+. ....+.+.+.+..+    .+..+|++++.|+++++.+|..
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~  286 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET  286 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4677999999999863 22344555555443    4556899999999999999865

>PRK12289 GTPase RsgA; Reviewed

Probab=98.52  E-value=1.1e-07  Score=88.93  Aligned_cols=57  Identities=25%  Similarity=0.230  Sum_probs=41.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC-CCCCCCCC-------ceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAK-PDIADYPF-------TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  171 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~-~~i~~~~~-------tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~  171 (310)
                      .++|+|+||||||||+|+|.+.. ..++..+.       ||.......++.           ...++||||+.+..
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-----------g~~liDTPG~~~~~  238 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-----------GGLLADTPGFNQPD  238 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-----------CcEEEeCCCccccc
Confidence            47999999999999999999765 33455555       666554433321           24799999997653

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=2.1e-06  Score=84.45  Aligned_cols=139  Identities=22%  Similarity=0.251  Sum_probs=83.0

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceee-----ccce---Ee--------------e-------CCC--
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLM-----PNLG---RL--------------D-------GDP--  148 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~-----~~~~---~v--------------~-------~~~--  148 (310)
                      +.-.||++.|.+++||||++|+++..+.-.+....||-.     -..|   ..              .       .+.  
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            566899999999999999999999876444333333310     0000   00              0       000  


Q ss_pred             --------CCCCc---cCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcC
Q 021615          149 --------TLGAE---KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN  217 (310)
Q Consensus       149 --------~~~~~---~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~  217 (310)
                              .|++.   -+...+.++|.||+.-.    ..+.....++...+|++|||+.+.+..+....+.+. ...   
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~----se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~-~vs---  258 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD----SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFH-KVS---  258 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCc----hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHH-Hhh---
Confidence                    00110   01236889999999754    334455667778999999999998765554433332 222   


Q ss_pred             CCCCCCC-EEEEEeCCCCCCcH-hHHHHHHHHHH
Q 021615          218 PDYLERP-FIVVLNKIDLPEAR-DRLQSLTEEIL  249 (310)
Q Consensus       218 ~~~~~~p-~ivv~NK~Dl~~~~-~~~~~l~~~l~  249 (310)
                         .++| +.++.||.|...++ +..+.+.+.+.
T Consensus       259 ---~~KpniFIlnnkwDasase~ec~e~V~~Qi~  289 (749)
T KOG0448|consen  259 ---EEKPNIFILNNKWDASASEPECKEDVLKQIH  289 (749)
T ss_pred             ---ccCCcEEEEechhhhhcccHHHHHHHHHHHH
Confidence               1355 56677888987653 34445554443

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.46  E-value=3.8e-07  Score=75.93  Aligned_cols=66  Identities=17%  Similarity=0.255  Sum_probs=40.5

Q ss_pred             CceEEEeCCCCCccccCCchHHHH-----HHHHhhhcCEEEEecccCCCCc-HHHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 021615          157 SEATLADLPGLIEGAHLGKGLGRN-----FLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLN  230 (310)
Q Consensus       157 ~~~~i~DtPG~~~~~~~~~~l~~~-----~~~~l~~~d~il~VvD~s~~~~-~~~~~~~~~~l~~~~~~~~~~p~ivv~N  230 (310)
                      ....++||||..+...    +...     .+....+.|.+++|+|+..... ......+..++..        -=++|+|
T Consensus        87 ~d~I~IEt~G~~~p~~----~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~--------ad~ivln  154 (158)
T cd03112          87 FDRIVIETTGLADPGP----VAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF--------ADRILLN  154 (158)
T ss_pred             CCEEEEECCCcCCHHH----HHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH--------CCEEEEe
Confidence            4679999999976522    2222     2233456899999999875221 1122334455543        1267899


Q ss_pred             CCCC
Q 021615          231 KIDL  234 (310)
Q Consensus       231 K~Dl  234 (310)
                      |+|+
T Consensus       155 k~dl  158 (158)
T cd03112         155 KTDL  158 (158)
T ss_pred             cccC
Confidence            9996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.45  E-value=1e-06  Score=78.74  Aligned_cols=85  Identities=20%  Similarity=0.185  Sum_probs=64.6

Q ss_pred             HhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC--CccccCc
Q 021615          184 HLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKVTSET  260 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~--~~~sa~~  260 (310)
                      ++.++|.+++|+|+.++. ++..+..|+..+..     .+.|.++|+||+|+.+..+...+..+.+...++  ..+|+++
T Consensus        33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAkt  107 (245)
T TIGR00157        33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKN  107 (245)
T ss_pred             ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            456899999999999766 67777777766653     468999999999997644433344455555554  4589999


Q ss_pred             cCCHHHHHHHHhh
Q 021615          261 ELSSEDAVKSLST  273 (310)
Q Consensus       261 ~~gi~~l~~~l~~  273 (310)
                      +.|++++|..+..
T Consensus       108 g~gi~eLf~~l~~  120 (245)
T TIGR00157       108 QDGLKELIEALQN  120 (245)
T ss_pred             chhHHHHHhhhcC
Confidence            9999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.45  E-value=2.1e-07  Score=83.16  Aligned_cols=57  Identities=26%  Similarity=0.285  Sum_probs=39.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCC-CCCC-------CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKP-DIAD-------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  171 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~-~i~~-------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~  171 (310)
                      ..++++|.||||||||+|+|.+... .+++       ...||.......+  .          ...++||||+.+..
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~----------~~~liDtPG~~~~~  185 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H----------GGLIADTPGFNEFG  185 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C----------CcEEEeCCCccccC
Confidence            3689999999999999999998642 2222       2336665544333  1          24899999998754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.44  E-value=1.7e-07  Score=77.87  Aligned_cols=58  Identities=26%  Similarity=0.283  Sum_probs=35.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCC-C---CCC----CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKP-D---IAD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  171 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~-~---i~~----~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~  171 (310)
                      ..++++|++|||||||+|+|.+... .   ++.    --.||.......++           ....|+||||+.+..
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~-----------~g~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP-----------DGGYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET-----------TSEEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC-----------CCcEEEECCCCCccc
Confidence            6799999999999999999998741 1   111    12244433333331           156899999997653

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.39  E-value=4.4e-07  Score=87.93  Aligned_cols=120  Identities=24%  Similarity=0.253  Sum_probs=82.8

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCC---CCC---------------CCCceeeccceEeeCCCCCCCccCCCce
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD---IAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEA  159 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~---i~~---------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~  159 (310)
                      .++.+..|+++-.--+||||+..+++-....   +..               .-+.|.......+.    |.  .  .++
T Consensus        35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~----w~--~--~~i  106 (721)
T KOG0465|consen   35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFT----WR--D--YRI  106 (721)
T ss_pred             chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeee----ec--c--cee
Confidence            4557788999999999999999998643211   111               11222221111111    11  1  279


Q ss_pred             EEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615          160 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR  238 (310)
Q Consensus       160 ~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~  238 (310)
                      .++||||++++..+       ..+.++-.|..++|+|+..+...+.. .++..+..|     ++|.++.+||+|+..+.
T Consensus       107 NiIDTPGHvDFT~E-------VeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~ry-----~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  107 NIIDTPGHVDFTFE-------VERALRVLDGAVLVLDAVAGVESQTE-TVWRQMKRY-----NVPRICFINKMDRMGAS  172 (721)
T ss_pred             EEecCCCceeEEEE-------ehhhhhhccCeEEEEEcccceehhhH-HHHHHHHhc-----CCCeEEEEehhhhcCCC
Confidence            99999999998653       34566678999999999887666654 455677776     79999999999998764

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.34  E-value=3.6e-07  Score=84.67  Aligned_cols=64  Identities=28%  Similarity=0.471  Sum_probs=51.4

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH  172 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~  172 (310)
                      +++...+|||+|+||+||||+||+|...+.. +++.|+.|..-....+  +         ..+.++|.||++-...
T Consensus       248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L--d---------k~i~llDsPgiv~~~~  312 (435)
T KOG2484|consen  248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL--D---------KKIRLLDSPGIVPPSI  312 (435)
T ss_pred             ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec--c---------CCceeccCCceeecCC
Confidence            4677889999999999999999999998864 4888888876544332  2         3689999999986544

>PRK00098 GTPase RsgA; Reviewed

Probab=98.33  E-value=1.2e-06  Score=80.44  Aligned_cols=58  Identities=29%  Similarity=0.241  Sum_probs=39.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCC-------CceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  170 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~-------~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~  170 (310)
                      ...++++|.+|||||||+|+|.+.... .+..+       .||.......+.           ....++||||+.+.
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~-----------~~~~~~DtpG~~~~  229 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP-----------GGGLLIDTPGFSSF  229 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC-----------CCcEEEECCCcCcc
Confidence            346899999999999999999987532 23332       255444433332           14589999999764

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=2.1e-07  Score=86.51  Aligned_cols=129  Identities=22%  Similarity=0.229  Sum_probs=84.9

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC---C---------------CCCCceeeccceEeeCCCCCCCccCCCceEE
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI---A---------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL  161 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i---~---------------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i  161 (310)
                      ..+.+|+++..-.+||||...+++-....+   +               ...+.|+......+++.        +.++.+
T Consensus        35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwk--------g~rinl  106 (753)
T KOG0464|consen   35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK--------GHRINL  106 (753)
T ss_pred             hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccc--------cceEee
Confidence            445679999999999999999986432111   1               11223332222222222        238999


Q ss_pred             EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--h
Q 021615          162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--D  239 (310)
Q Consensus       162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~  239 (310)
                      +||||+.++.-       ...++++.-|+++.|+|++.+...+.+..|++ -..     .+.|.++.+||+|...+.  .
T Consensus       107 idtpghvdf~l-------everclrvldgavav~dasagve~qtltvwrq-adk-----~~ip~~~finkmdk~~anfe~  173 (753)
T KOG0464|consen  107 IDTPGHVDFRL-------EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-ADK-----FKIPAHCFINKMDKLAANFEN  173 (753)
T ss_pred             ecCCCcceEEE-------EHHHHHHHhcCeEEEEeccCCcccceeeeehh-ccc-----cCCchhhhhhhhhhhhhhhhh
Confidence            99999998754       34566777899999999998877766665543 332     478999999999998653  2


Q ss_pred             HHHHHHHHHH
Q 021615          240 RLQSLTEEIL  249 (310)
Q Consensus       240 ~~~~l~~~l~  249 (310)
                      ..+.+.+.+.
T Consensus       174 avdsi~ekl~  183 (753)
T KOG0464|consen  174 AVDSIEEKLG  183 (753)
T ss_pred             HHHHHHHHhC
Confidence            2344444443

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=1.6e-06  Score=83.45  Aligned_cols=121  Identities=19%  Similarity=0.239  Sum_probs=78.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      +-|++||+||+|||||+..|...-.      ..|+....|.+.....     -.+++++..+|.-.          .++.
T Consensus        70 fIvavvGPpGtGKsTLirSlVrr~t------k~ti~~i~GPiTvvsg-----K~RRiTflEcp~Dl----------~~mi  128 (1077)
T COG5192          70 FIVAVVGPPGTGKSTLIRSLVRRFT------KQTIDEIRGPITVVSG-----KTRRITFLECPSDL----------HQMI  128 (1077)
T ss_pred             eEEEeecCCCCChhHHHHHHHHHHH------HhhhhccCCceEEeec-----ceeEEEEEeChHHH----------HHHH
Confidence            4578999999999999999986531      1122222222211100     02379999999432          2444


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHHHHHHHHHHh
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQSLTEEILK  250 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~l~~~l~~  250 (310)
                      ....-||++++++|+.-+...+.++.+ +.+..     .+.| ++.|++..|+......+......|..
T Consensus       129 DvaKIaDLVlLlIdgnfGfEMETmEFL-nil~~-----HGmPrvlgV~ThlDlfk~~stLr~~KKrlkh  191 (1077)
T COG5192         129 DVAKIADLVLLLIDGNFGFEMETMEFL-NILIS-----HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKH  191 (1077)
T ss_pred             hHHHhhheeEEEeccccCceehHHHHH-HHHhh-----cCCCceEEEEeecccccChHHHHHHHHHHhh
Confidence            555678999999999876666665533 44443     3555 67899999999877666666665543

>cd01859 MJ1464 MJ1464

Probab=98.24  E-value=6e-06  Score=68.21  Aligned_cols=88  Identities=16%  Similarity=0.214  Sum_probs=57.1

Q ss_pred             HHHHhh-hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc--CCCccc
Q 021615          181 FLRHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVT  257 (310)
Q Consensus       181 ~~~~l~-~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~--g~~~~s  257 (310)
                      .++|+. .||++++|+|++++....+. .+...+..     .++|+++|+||+|+.+... ...+.......  .+..+|
T Consensus         5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~-----~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~iS   77 (156)
T cd01859           5 LVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE-----LGKKLLIVLNKADLVPKEV-LEKWKSIKESEGIPVVYVS   77 (156)
T ss_pred             HHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh-----CCCcEEEEEEhHHhCCHHH-HHHHHHHHHhCCCcEEEEE
Confidence            345554 59999999999875433332 23333322     3689999999999975422 22222222222  345589


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      ++++.|+++++..+....
T Consensus        78 a~~~~gi~~L~~~l~~~~   95 (156)
T cd01859          78 AKERLGTKILRRTIKELA   95 (156)
T ss_pred             ccccccHHHHHHHHHHHH
Confidence            999999999999887543

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=98.24  E-value=3.9e-06  Score=69.56  Aligned_cols=88  Identities=17%  Similarity=0.174  Sum_probs=59.2

Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-CC--Ccccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-GC--DKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-g~--~~~sa  258 (310)
                      ++.++.+|++++|+|++.+.... ...+.+.+...   ..++|+++|+||+|+.+..+ ...+...+.+. .+  ..+|+
T Consensus         3 ~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~---~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa   77 (157)
T cd01858           3 YKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE---KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASI   77 (157)
T ss_pred             hHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc---cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeec
Confidence            56788999999999998754322 23344445432   13589999999999976533 34444444432 12  23799


Q ss_pred             CccCCHHHHHHHHhhc
Q 021615          259 ETELSSEDAVKSLSTE  274 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~  274 (310)
                      +.+.|++++++.+...
T Consensus        78 ~~~~~~~~L~~~l~~~   93 (157)
T cd01858          78 NNPFGKGSLIQLLRQF   93 (157)
T ss_pred             cccccHHHHHHHHHHH
Confidence            9999999999887543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=5.9e-06  Score=82.06  Aligned_cols=116  Identities=16%  Similarity=0.125  Sum_probs=77.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCC-CCcee------ec-------cceEeeCCCCCCCccCCCceEEEeCCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADY-PFTTL------MP-------NLGRLDGDPTLGAEKYSSEATLADLPG  166 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~-~~tT~------~~-------~~~~v~~~~~~~~~~~~~~~~i~DtPG  166 (310)
                      .+.+|.++-.-.-|||||...|...+.-++.. .++-+      +.       ..+.+....    ..  ..++++|+||
T Consensus         8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~----~~--~~~nlidspg   81 (887)
T KOG0467|consen    8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH----KD--YLINLIDSPG   81 (887)
T ss_pred             ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc----Cc--eEEEEecCCC
Confidence            35679999999999999999999876544321 12111      00       001111100    01  2689999999


Q ss_pred             CCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          167 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       167 ~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      ++++.++       .-+..+-||..++++|+-.+...+.+..+++....      +...++|+||+|++
T Consensus        82 hvdf~se-------vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~------~~~~~lvinkidrl  137 (887)
T KOG0467|consen   82 HVDFSSE-------VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE------GLKPILVINKIDRL  137 (887)
T ss_pred             ccchhhh-------hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc------cCceEEEEehhhhH
Confidence            9998652       33445679999999999988877777666655543      56778999999953

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=98.21  E-value=7.5e-07  Score=82.44  Aligned_cols=60  Identities=28%  Similarity=0.401  Sum_probs=46.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  171 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~  171 (310)
                      .-..|++||+||+||||+||.|-..++. +++.|+-|.-.+..++           .+++.++|+||+.-..
T Consensus       306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL-----------mkrIfLIDcPGvVyps  366 (572)
T KOG2423|consen  306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL-----------MKRIFLIDCPGVVYPS  366 (572)
T ss_pred             cceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH-----------HhceeEecCCCccCCC
Confidence            3457999999999999999999998865 4888888874433222           2479999999997543

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.20  E-value=7.4e-06  Score=72.78  Aligned_cols=125  Identities=19%  Similarity=0.206  Sum_probs=74.6

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC----CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc--
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--  175 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i----~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~--  175 (310)
                      .++|..||.+|.|||||+..|++.....    ...|..-+.++...+.-.    .  ..-+++|+||.|+.+......  
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEs----n--vrlKLtiv~tvGfGDQinK~~Sy  115 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQES----N--VRLKLTIVDTVGFGDQINKEDSY  115 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhc----C--eeEEEEEEeecccccccCccccc
Confidence            3679999999999999999999876432    223333333222222111    1  122789999999976432211  


Q ss_pred             -----hHHHHHHHHh---------------hhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615          176 -----GLGRNFLRHL---------------RRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDL  234 (310)
Q Consensus       176 -----~l~~~~~~~l---------------~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl  234 (310)
                           .+..+|..++               .+.++++|.+..+.... ..+. ...+.|.      ..+.+|-|+-|+|.
T Consensus       116 k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~L-KslDLvtmk~Ld------skVNIIPvIAKaDt  188 (406)
T KOG3859|consen  116 KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSL-KSLDLVTMKKLD------SKVNIIPVIAKADT  188 (406)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcch-hHHHHHHHHHHh------hhhhhHHHHHHhhh
Confidence                 1223332222               35688999998876432 2222 2223444      25677888899998


Q ss_pred             CCcHh
Q 021615          235 PEARD  239 (310)
Q Consensus       235 ~~~~~  239 (310)
                      ....+
T Consensus       189 isK~e  193 (406)
T KOG3859|consen  189 ISKEE  193 (406)
T ss_pred             hhHHH
Confidence            87544

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.20  E-value=2.4e-05  Score=75.88  Aligned_cols=154  Identities=20%  Similarity=0.195  Sum_probs=91.4

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeecc-ceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~-~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      |..+.+.++|+.|+|||.|++++.|....- .+.+++...+ +..+...   +..   .-+.+-|.+-. +......   
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~---g~~---k~LiL~ei~~~-~~~~l~~---  491 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVK---GQQ---KYLILREIGED-DQDFLTS---  491 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeec---ccc---ceEEEeecCcc-ccccccC---
Confidence            466789999999999999999999965332 2222222111 1111111   111   13566666544 2211111   


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCC
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCD  254 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~  254 (310)
                          .. ..||++.+++|.+++.+++....+   ...|... ...|+++|+.|+|+....+    +..++.   .+++++
T Consensus       492 ----ke-~~cDv~~~~YDsS~p~sf~~~a~v---~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~---~~~~i~  559 (625)
T KOG1707|consen  492 ----KE-AACDVACLVYDSSNPRSFEYLAEV---YNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFC---RQLGLP  559 (625)
T ss_pred             ----cc-ceeeeEEEecccCCchHHHHHHHH---HHHhhhc-cCCceEEEeeccccchhhhccCCChHHHH---HhcCCC
Confidence                01 469999999999988776654433   2333222 5799999999999976542    123333   345554


Q ss_pred             c---cccCccCCHHHHHHHHhhccCC
Q 021615          255 K---VTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       255 ~---~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      .   +|.+.... .++|..|+..+..
T Consensus       560 ~P~~~S~~~~~s-~~lf~kL~~~A~~  584 (625)
T KOG1707|consen  560 PPIHISSKTLSS-NELFIKLATMAQY  584 (625)
T ss_pred             CCeeeccCCCCC-chHHHHHHHhhhC
Confidence            4   56664333 8899888877644

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.20  E-value=2.1e-06  Score=78.44  Aligned_cols=58  Identities=31%  Similarity=0.257  Sum_probs=38.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-CC-------CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-AD-------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  171 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~-------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~  171 (310)
                      ..++++|++|||||||+|+|++..... +.       ...||.......+.           ....++||||+.+..
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~-----------~~~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP-----------GGGLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC-----------CCCEEEECCCCCccC
Confidence            569999999999999999999875321 21       12244433322221           134799999997643

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.17  E-value=3.3e-05  Score=70.15  Aligned_cols=165  Identities=16%  Similarity=0.134  Sum_probs=90.2

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      .+.....|.++|..++||||||..|-+.+. .  .++.-+.-  ..++......+..  .++.+|-.-|-.-.    .++
T Consensus        48 klpsgk~VlvlGdn~sGKtsLi~klqg~e~-~--KkgsgLeY--~yl~V~de~RDd~--tr~~VWiLDGd~~h----~~L  116 (473)
T KOG3905|consen   48 KLPSGKNVLVLGDNGSGKTSLISKLQGSET-V--KKGSGLEY--LYLHVHDEDRDDL--TRCNVWILDGDLYH----KGL  116 (473)
T ss_pred             cCCCCCeEEEEccCCCchhHHHHHhhcccc-c--CCCCCcce--EEEecccccchhh--hhcceEEecCchhh----hhH
Confidence            445667899999999999999999998761 1  11111110  1111111111111  25666766563211    222


Q ss_pred             HHHHHHHhhhc-CEEEEecccCCC-CcHHHHHHHHHHHH-------------------------hcCC------------
Q 021615          178 GRNFLRHLRRT-RLLVHVIDAAAE-NPVNDYRTVKEELR-------------------------MYNP------------  218 (310)
Q Consensus       178 ~~~~~~~l~~~-d~il~VvD~s~~-~~~~~~~~~~~~l~-------------------------~~~~------------  218 (310)
                      -+-.+..-.-+ -++++++|++.+ ...+.++.|...+.                         .|..            
T Consensus       117 Lk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r  196 (473)
T KOG3905|consen  117 LKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRR  196 (473)
T ss_pred             HhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccc
Confidence            21111111112 367888899876 22333333332221                         1110            


Q ss_pred             ----------------------CCCCCCEEEEEeCCCCCCc--------HhHHHHHHHHHHhc----C--CCccccCccC
Q 021615          219 ----------------------DYLERPFIVVLNKIDLPEA--------RDRLQSLTEEILKI----G--CDKVTSETEL  262 (310)
Q Consensus       219 ----------------------~~~~~p~ivv~NK~Dl~~~--------~~~~~~l~~~l~~~----g--~~~~sa~~~~  262 (310)
                                            ...+.|++||++|||....        ++.+..+...++++    |  +..+|.++..
T Consensus       197 ~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~K  276 (473)
T KOG3905|consen  197 TTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETK  276 (473)
T ss_pred             cccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeeccccc
Confidence                                  1246899999999998431        23344444445433    2  4558999999


Q ss_pred             CHHHHHHHHhh
Q 021615          263 SSEDAVKSLST  273 (310)
Q Consensus       263 gi~~l~~~l~~  273 (310)
                      +++=++.++..
T Consensus       277 NidllyKYivh  287 (473)
T KOG3905|consen  277 NIDLLYKYIVH  287 (473)
T ss_pred             chHHHHHHHHH
Confidence            99999887764

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.14  E-value=3.3e-06  Score=76.49  Aligned_cols=58  Identities=29%  Similarity=0.289  Sum_probs=38.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCC-CC---CCC----CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAK-PD---IAD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  171 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~-~~---i~~----~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~  171 (310)
                      ...+++|.+|||||||+|+|.... .+   ++.    --.||.......+..           .-.|+||||+.+..
T Consensus       165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~-----------gG~iiDTPGf~~~~  230 (301)
T COG1162         165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG-----------GGWIIDTPGFRSLG  230 (301)
T ss_pred             CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-----------CCEEEeCCCCCccC
Confidence            357899999999999999998743 11   221    223555444433321           34789999997753

>cd01855 YqeH YqeH

Probab=98.14  E-value=6.9e-06  Score=70.22  Aligned_cols=90  Identities=19%  Similarity=0.195  Sum_probs=57.1

Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHH-----Hhc-
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-----LKI-  251 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l-----~~~-  251 (310)
                      ...+..+++++|++++|+|+++......     .++...   ..++|+++|+||+|+.........+....     ... 
T Consensus        25 ~~~l~~~~~~ad~il~VvD~~~~~~~~~-----~~l~~~---~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          25 LNLLSSISPKKALVVHVVDIFDFPGSLI-----PRLRLF---GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHhcccCCcEEEEEEECccCCCccc-----hhHHHh---cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence            3344556789999999999987542211     112111   13689999999999975432122222111     222 


Q ss_pred             ----CCCccccCccCCHHHHHHHHhhcc
Q 021615          252 ----GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       252 ----g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                          .+..+|++++.|+++++..+...+
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence                244589999999999999987644

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=1e-05  Score=70.55  Aligned_cols=160  Identities=19%  Similarity=0.163  Sum_probs=89.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ++|.++|.--+||||+-...+..-+ .-.-+...|..+....+...-        ..+.+||.||+.+.....-.    +
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sf--------inf~v~dfPGQ~~~Fd~s~D----~   95 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSF--------INFQVWDFPGQMDFFDPSFD----Y   95 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhh--------cceEEeecCCccccCCCccC----H
Confidence            6699999999999999888776542 112222233332222222111        16899999999886432222    2


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-------HHHHHHHHHHhcCCC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-------RLQSLTEEILKIGCD  254 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-------~~~~l~~~l~~~g~~  254 (310)
                      ..-++.+.+++||+|+.+. -.+.+..+...+.....-..+..+-|.+.|.|-+..+.       ......+.+...|+.
T Consensus        96 e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle  174 (347)
T KOG3887|consen   96 EMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLE  174 (347)
T ss_pred             HHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhc
Confidence            2334679999999998752 23333333333322222224677888999999886532       223344455555554


Q ss_pred             cc------ccCccCCHHHHHHHHhhcc
Q 021615          255 KV------TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ~~------sa~~~~gi~~l~~~l~~~~  275 (310)
                      .+      .+.-..++-++|..+..++
T Consensus       175 ~v~vsf~LTSIyDHSIfEAFSkvVQkL  201 (347)
T KOG3887|consen  175 KVQVSFYLTSIYDHSIFEAFSKVVQKL  201 (347)
T ss_pred             cceEEEEEeeecchHHHHHHHHHHHHH
Confidence            42      1222334555555544433

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.13  E-value=2.6e-05  Score=72.24  Aligned_cols=100  Identities=14%  Similarity=0.070  Sum_probs=54.6

Q ss_pred             ceEEEeCCCCCccccCC-chHHHHHHHHh-----hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 021615          158 EATLADLPGLIEGAHLG-KGLGRNFLRHL-----RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK  231 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~-~~l~~~~~~~l-----~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK  231 (310)
                      .++++||||........ ..+. .+.+.+     ...+..++|+|++..  .+.+.........      -.+.-+|+||
T Consensus       198 D~ViIDTaGr~~~~~~l~~eL~-~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~------~~~~giIlTK  268 (318)
T PRK10416        198 DVLIIDTAGRLHNKTNLMEELK-KIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEA------VGLTGIILTK  268 (318)
T ss_pred             CEEEEeCCCCCcCCHHHHHHHH-HHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhh------CCCCEEEEEC
Confidence            68999999986532210 1111 222222     135778999999853  2333333222221      1345788999


Q ss_pred             CCCCCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615          232 IDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVK  269 (310)
Q Consensus       232 ~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~  269 (310)
                      +|....-   -.+.......+++..-..+|++++++-.
T Consensus       269 lD~t~~~---G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~  303 (318)
T PRK10416        269 LDGTAKG---GVVFAIADELGIPIKFIGVGEGIDDLQP  303 (318)
T ss_pred             CCCCCCc---cHHHHHHHHHCCCEEEEeCCCChhhCcc
Confidence            9965432   2233334455666655558888766543

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.12  E-value=4.3e-06  Score=75.48  Aligned_cols=66  Identities=26%  Similarity=0.359  Sum_probs=48.1

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCC------CCCCCCCCceeeccc-eEeeCCCCCCCccCCCceEEEeCCCCCcccc
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNL-GRLDGDPTLGAEKYSSEATLADLPGLIEGAH  172 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~------~~i~~~~~tT~~~~~-~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~  172 (310)
                      .....|.++|-||+|||||+|++....      ..++.+|+.|..... ..+.-         ...+.++||||+....+
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~---------rp~vy~iDTPGil~P~I  211 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH---------RPPVYLIDTPGILVPSI  211 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc---------CCceEEecCCCcCCCCC
Confidence            355789999999999999999986432      344889999986544 22221         23689999999987755


Q ss_pred             CC
Q 021615          173 LG  174 (310)
Q Consensus       173 ~~  174 (310)
                      .+
T Consensus       212 ~~  213 (335)
T KOG2485|consen  212 VD  213 (335)
T ss_pred             CC
Confidence            43

>cd01856 YlqF YlqF

Probab=98.12  E-value=9.6e-06  Score=68.25  Aligned_cols=87  Identities=20%  Similarity=0.213  Sum_probs=58.9

Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc--CCCcc
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKV  256 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~--g~~~~  256 (310)
                      .+....+..+|++++|+|++.+....+.. +.+.+       .++|.++|+||+|+.+..+ ...+.+.+...  .+..+
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~-i~~~~-------~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~vi~i   81 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRNPL-LEKIL-------GNKPRIIVLNKADLADPKK-TKKWLKYFESKGEKVLFV   81 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCChh-hHhHh-------cCCCEEEEEehhhcCChHH-HHHHHHHHHhcCCeEEEE
Confidence            35567789999999999998654332221 22222       2579999999999975432 23333444432  23458


Q ss_pred             ccCccCCHHHHHHHHhhc
Q 021615          257 TSETELSSEDAVKSLSTE  274 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~  274 (310)
                      |++++.|++++...+...
T Consensus        82 Sa~~~~gi~~L~~~l~~~   99 (171)
T cd01856          82 NAKSGKGVKKLLKAAKKL   99 (171)
T ss_pred             ECCCcccHHHHHHHHHHH
Confidence            999999999999888664

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.12  E-value=1.1e-05  Score=65.75  Aligned_cols=80  Identities=20%  Similarity=0.261  Sum_probs=53.1

Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC--CCcc
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKV  256 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g--~~~~  256 (310)
                      +.++++++.||++++|+|+.++....+ ..+.+.+....   .++|+++|+||+|+.+.. ....+.+.+...+  +..+
T Consensus         3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~---~~k~~iivlNK~DL~~~~-~~~~~~~~~~~~~~~ii~i   77 (141)
T cd01857           3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD---PRKKNILLLNKADLLTEE-QRKAWAEYFKKEGIVVVFF   77 (141)
T ss_pred             HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc---CCCcEEEEEechhcCCHH-HHHHHHHHHHhcCCeEEEE
Confidence            356788999999999999987654442 23334444321   368999999999997543 3445555565544  3446


Q ss_pred             ccCccCC
Q 021615          257 TSETELS  263 (310)
Q Consensus       257 sa~~~~g  263 (310)
                      |+.++.+
T Consensus        78 Sa~~~~~   84 (141)
T cd01857          78 SALKENA   84 (141)
T ss_pred             EecCCCc
Confidence            7776653

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.11  E-value=3.4e-06  Score=71.53  Aligned_cols=75  Identities=19%  Similarity=0.224  Sum_probs=46.1

Q ss_pred             EEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHH----hcCCCccccCccCCH
Q 021615          190 LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEIL----KIGCDKVTSETELSS  264 (310)
Q Consensus       190 ~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~----~~g~~~~sa~~~~gi  264 (310)
                      .-++|+|.+.++...         +.-.|.+. +.=++|+||.|+...-. .++.+.+...    +..+..++.++|+|+
T Consensus       120 ~~v~VidvteGe~~P---------~K~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~  189 (202)
T COG0378         120 LRVVVIDVTEGEDIP---------RKGGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL  189 (202)
T ss_pred             eEEEEEECCCCCCCc---------ccCCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence            667888877654211         11112222 24578999999976422 1233333333    456777999999999


Q ss_pred             HHHHHHHhhc
Q 021615          265 EDAVKSLSTE  274 (310)
Q Consensus       265 ~~l~~~l~~~  274 (310)
                      ++.+.++...
T Consensus       190 ~~~~~~i~~~  199 (202)
T COG0378         190 DEWLRFIEPQ  199 (202)
T ss_pred             HHHHHHHHhh
Confidence            9999987543

>PRK00098 GTPase RsgA; Reviewed

Probab=98.06  E-value=1.4e-05  Score=73.36  Aligned_cols=83  Identities=19%  Similarity=0.125  Sum_probs=59.5

Q ss_pred             hhhcCEEEEecccCCCCcHHH-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC--CccccCcc
Q 021615          185 LRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKVTSETE  261 (310)
Q Consensus       185 l~~~d~il~VvD~s~~~~~~~-~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~--~~~sa~~~  261 (310)
                      +.++|++++|+|+.++.+... +..+...+..     .++|.++|+||+|+.+..+....+.+.+...++  ..+|++++
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~-----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-----NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            468999999999987655433 3445444443     468999999999997443444445555555554  45899999


Q ss_pred             CCHHHHHHHHh
Q 021615          262 LSSEDAVKSLS  272 (310)
Q Consensus       262 ~gi~~l~~~l~  272 (310)
                      .|+++++..+.
T Consensus       153 ~gi~~L~~~l~  163 (298)
T PRK00098        153 EGLDELKPLLA  163 (298)
T ss_pred             ccHHHHHhhcc
Confidence            99999998875

>PRK12289 GTPase RsgA; Reviewed

Probab=98.06  E-value=2.1e-05  Score=73.81  Aligned_cols=83  Identities=16%  Similarity=0.165  Sum_probs=59.4

Q ss_pred             hhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC--CccccCcc
Q 021615          185 LRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKVTSETE  261 (310)
Q Consensus       185 l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~--~~~sa~~~  261 (310)
                      +.++|.+++|+|+.++. ....+..++.....     .+.|+++|+||+|+.+..+ .+.+.+.+...++  ..+|+.++
T Consensus        87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~-----~~ip~ILVlNK~DLv~~~~-~~~~~~~~~~~g~~v~~iSA~tg  160 (352)
T PRK12289         87 VANADQILLVFALAEPPLDPWQLSRFLVKAES-----TGLEIVLCLNKADLVSPTE-QQQWQDRLQQWGYQPLFISVETG  160 (352)
T ss_pred             hhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEchhcCChHH-HHHHHHHHHhcCCeEEEEEcCCC
Confidence            56899999999998754 22233444443332     4789999999999986533 4555566666554  44799999


Q ss_pred             CCHHHHHHHHhh
Q 021615          262 LSSEDAVKSLST  273 (310)
Q Consensus       262 ~gi~~l~~~l~~  273 (310)
                      .|+++++..+..
T Consensus       161 ~GI~eL~~~L~~  172 (352)
T PRK12289        161 IGLEALLEQLRN  172 (352)
T ss_pred             CCHHHHhhhhcc
Confidence            999999998764

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=98.02  E-value=1.1e-05  Score=70.21  Aligned_cols=77  Identities=26%  Similarity=0.325  Sum_probs=44.3

Q ss_pred             CceEEEeCCCCCccccCCchHHHHHHHHhhhcCE---EEEecccCC-CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 021615          157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRL---LVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI  232 (310)
Q Consensus       157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~---il~VvD~s~-~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~  232 (310)
                      ..+.++|.||+.+.......+... .+.+++.|.   ++.++|+-- .++..-+..++-.+....  ..+-|-+=|+.|+
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I-~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl--~melphVNvlSK~  173 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKI-FRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML--HMELPHVNVLSKA  173 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHH-HHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH--hhcccchhhhhHh
Confidence            368999999999865433444433 455655554   455555422 233333333333333221  1467888899999


Q ss_pred             CCCC
Q 021615          233 DLPE  236 (310)
Q Consensus       233 Dl~~  236 (310)
                      |+..
T Consensus       174 Dl~~  177 (290)
T KOG1533|consen  174 DLLK  177 (290)
T ss_pred             HHHH
Confidence            9875

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.02  E-value=8.5e-05  Score=71.17  Aligned_cols=96  Identities=11%  Similarity=0.080  Sum_probs=49.9

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHH--hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~--l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .++|+||||.....   ..+-......  ....+.+++|+|+......  .. ..+.+..     .-.+.-+|+||+|-.
T Consensus       184 DvViIDTaGr~~~d---~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~-~a~~F~~-----~~~~~g~IlTKlD~~  252 (429)
T TIGR01425       184 DIIIVDTSGRHKQE---DSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EA-QAKAFKD-----SVDVGSVIITKLDGH  252 (429)
T ss_pred             CEEEEECCCCCcch---HHHHHHHHHHhhhcCCcEEEEEeccccChhH--HH-HHHHHHh-----ccCCcEEEEECccCC
Confidence            78999999975431   2222232222  2346889999998754221  11 1122222     123567889999986


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHHH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSEDA  267 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l  267 (310)
                      ..--   .........+.+..-..+|+.++++
T Consensus       253 argG---~aLs~~~~t~~PI~fig~Ge~v~Dl  281 (429)
T TIGR01425       253 AKGG---GALSAVAATKSPIIFIGTGEHIDDF  281 (429)
T ss_pred             CCcc---HHhhhHHHHCCCeEEEcCCCChhhc
Confidence            4321   1122223334444444455555443

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.01  E-value=2.1e-05  Score=71.51  Aligned_cols=88  Identities=17%  Similarity=0.217  Sum_probs=59.9

Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC--CCcc
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKV  256 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g--~~~~  256 (310)
                      +++.+.++.+|++++|+|+..+....+. .+.+.+       .++|+++|+||+|+.+..+ ...+.+.+...+  +..+
T Consensus        13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-------~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~~~~~vi~i   83 (276)
T TIGR03596        13 REIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-------GNKPRLIVLNKADLADPAV-TKQWLKYFEEKGIKALAI   83 (276)
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-------CCCCEEEEEEccccCCHHH-HHHHHHHHHHcCCeEEEE
Confidence            4566778999999999999865443331 222222       2589999999999975432 344444454433  3458


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      |+..+.|+.++.+.+....
T Consensus        84 Sa~~~~gi~~L~~~i~~~~  102 (276)
T TIGR03596        84 NAKKGKGVKKIIKAAKKLL  102 (276)
T ss_pred             ECCCcccHHHHHHHHHHHH
Confidence            9999999999988775543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=4.5e-05  Score=69.68  Aligned_cols=132  Identities=23%  Similarity=0.303  Sum_probs=83.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCC-----------CC-----CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKP-----------DI-----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG  166 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~-----------~i-----~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG  166 (310)
                      .+|+-+|.-.-|||||..+++....           .+     ...-+.|+  +...+.|...      .+.+-=+|+||
T Consensus        55 vNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITI--n~aHveYeTa------~RhYaH~DCPG  126 (449)
T KOG0460|consen   55 VNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITI--NAAHVEYETA------KRHYAHTDCPG  126 (449)
T ss_pred             ccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceE--eeeeeeeecc------ccccccCCCCc
Confidence            4689999999999999999975321           11     11223344  3344444332      23567799999


Q ss_pred             CCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCC-CCEEEEEeCCCCCCcHhHH----
Q 021615          167 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE-RPFIVVLNKIDLPEARDRL----  241 (310)
Q Consensus       167 ~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~-~p~ivv~NK~Dl~~~~~~~----  241 (310)
                      +-++       .+....-...-|+.++||.+.+....+.-+.++-. ++     .+ ..++|.+||.|+.+..+.+    
T Consensus       127 HADY-------IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLA-rQ-----VGV~~ivvfiNKvD~V~d~e~leLVE  193 (449)
T KOG0460|consen  127 HADY-------IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLA-RQ-----VGVKHIVVFINKVDLVDDPEMLELVE  193 (449)
T ss_pred             hHHH-------HHHhhcCccccCceEEEEEcCCCCCcchHHHHHHH-HH-----cCCceEEEEEecccccCCHHHHHHHH
Confidence            9554       22222333456999999999997666655544311 11     23 4478889999999665533    


Q ss_pred             HHHHHHHHhcCCCc
Q 021615          242 QSLTEEILKIGCDK  255 (310)
Q Consensus       242 ~~l~~~l~~~g~~~  255 (310)
                      -++++.|..+|+..
T Consensus       194 mE~RElLse~gf~G  207 (449)
T KOG0460|consen  194 MEIRELLSEFGFDG  207 (449)
T ss_pred             HHHHHHHHHcCCCC
Confidence            35666777777765

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.99  E-value=8.4e-05  Score=67.38  Aligned_cols=97  Identities=14%  Similarity=0.104  Sum_probs=54.0

Q ss_pred             ceEEEeCCCCCccccCCchHH---HHHHHHhh-----hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEE
Q 021615          158 EATLADLPGLIEGAHLGKGLG---RNFLRHLR-----RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL  229 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~---~~~~~~l~-----~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~  229 (310)
                      .+.++||||.....   ..+-   ..+.+.+.     .+|.+++|+|++.  ..+.+.......+..      .+.-+|+
T Consensus       156 D~ViIDT~G~~~~d---~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~------~~~g~Il  224 (272)
T TIGR00064       156 DVVLIDTAGRLQNK---VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAV------GLTGIIL  224 (272)
T ss_pred             CEEEEeCCCCCcch---HHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhC------CCCEEEE
Confidence            68999999986531   1111   12222222     2789999999974  333444333333221      2457889


Q ss_pred             eCCCCCCcHhHHHHHHHHHHhcCCCccccCccCCHHHHH
Q 021615          230 NKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAV  268 (310)
Q Consensus       230 NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~  268 (310)
                      ||+|.....-..   .......+++..-..+|++++++-
T Consensus       225 TKlDe~~~~G~~---l~~~~~~~~Pi~~~~~Gq~~~dl~  260 (272)
T TIGR00064       225 TKLDGTAKGGII---LSIAYELKLPIKFIGVGEKIDDLA  260 (272)
T ss_pred             EccCCCCCccHH---HHHHHHHCcCEEEEeCCCChHhCc
Confidence            999986543222   222334455555555777765543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=97.99  E-value=2e-05  Score=84.90  Aligned_cols=132  Identities=23%  Similarity=0.166  Sum_probs=72.9

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCc--eee-ccceEeeCCCCCCCccCCCceEEEeCCCCCccc---
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFT--TLM-PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA---  171 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~t--T~~-~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~---  171 (310)
                      .+-.+|=-+|+|++|+||||+|+.- |.+....+....  +.. .....++.       .+.+..+++||+|..-..   
T Consensus       107 ~lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w-------wf~~~avliDtaG~y~~~~~~  178 (1169)
T TIGR03348       107 YLYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW-------WFTDEAVLIDTAGRYTTQDSD  178 (1169)
T ss_pred             hhhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce-------EecCCEEEEcCCCccccCCCc
Confidence            4556666899999999999999987 443222110000  000 00001111       123478999999954221   


Q ss_pred             -cCCchHHHHHHHHhh------hcCEEEEecccCCCC--cH----HHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCc
Q 021615          172 -HLGKGLGRNFLRHLR------RTRLLVHVIDAAAEN--PV----NDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       172 -~~~~~l~~~~~~~l~------~~d~il~VvD~s~~~--~~----~~~~~~~~~l~~~~~~-~~~~p~ivv~NK~Dl~~~  237 (310)
                       ......-..|+..++      -.++||+++|+++..  ..    .....++..|.+.... -...|+.||++|||+...
T Consensus       179 ~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       179 PEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             ccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence             112333445555553      369999999987621  11    1123333333322211 137899999999998853

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.98  E-value=1.7e-05  Score=75.67  Aligned_cols=135  Identities=18%  Similarity=0.241  Sum_probs=83.8

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-----CCCCCcee--eccceEeeC-------------------CCCCCCc
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-----ADYPFTTL--MPNLGRLDG-------------------DPTLGAE  153 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-----~~~~~tT~--~~~~~~v~~-------------------~~~~~~~  153 (310)
                      +.+.++.++..-.-|||||...|.....-+     +...||..  +.+...+..                   ...-...
T Consensus        17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~   96 (842)
T KOG0469|consen   17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN   96 (842)
T ss_pred             cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence            456678899999999999999998654322     12222211  111111110                   0000111


Q ss_pred             cCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615          154 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  233 (310)
Q Consensus       154 ~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D  233 (310)
                      .|  -+.++|.||+.++++       .....++-+|+.+.|+|+-+..-.+.-..+++.+.+     .-+| ++|+||+|
T Consensus        97 ~F--LiNLIDSPGHVDFSS-------EVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E-----RIkP-vlv~NK~D  161 (842)
T KOG0469|consen   97 GF--LINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE-----RIKP-VLVMNKMD  161 (842)
T ss_pred             ce--eEEeccCCCcccchh-------hhhheeEeccCcEEEEEccCceEechHHHHHHHHHh-----hccc-eEEeehhh
Confidence            12  578999999999865       344567789999999999887766665666666664     2345 66789999


Q ss_pred             CC------CcHhHHHHHHHHHH
Q 021615          234 LP------EARDRLQSLTEEIL  249 (310)
Q Consensus       234 l~------~~~~~~~~l~~~l~  249 (310)
                      +.      +.++..+.+.+..+
T Consensus       162 RAlLELq~~~EeLyqtf~R~VE  183 (842)
T KOG0469|consen  162 RALLELQLSQEELYQTFQRIVE  183 (842)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHh
Confidence            73      23444555555554

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.97  E-value=0.00025  Score=59.81  Aligned_cols=81  Identities=21%  Similarity=0.233  Sum_probs=54.8

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .++++|||+....         .....+..+|.+++|+..+.. .......+.+.++.+     +.|+.+|+||+|....
T Consensus        94 d~viiDtpp~~~~---------~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~-----~~~~~vV~N~~~~~~~  158 (179)
T cd03110          94 ELIIIDGPPGIGC---------PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF-----GIPVGVVINKYDLNDE  158 (179)
T ss_pred             CEEEEECcCCCcH---------HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc-----CCCEEEEEeCCCCCcc
Confidence            7899999975432         223445689999999998854 445556666666653     5678899999997643


Q ss_pred             HhHHHHHHHHHHhcCCCc
Q 021615          238 RDRLQSLTEEILKIGCDK  255 (310)
Q Consensus       238 ~~~~~~l~~~l~~~g~~~  255 (310)
                        ..+++.+.++..+++.
T Consensus       159 --~~~~~~~~~~~~~~~v  174 (179)
T cd03110         159 --IAEEIEDYCEEEGIPI  174 (179)
T ss_pred             --hHHHHHHHHHHcCCCe
Confidence              2345556666666543

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.96  E-value=6.5e-06  Score=70.42  Aligned_cols=79  Identities=24%  Similarity=0.260  Sum_probs=45.1

Q ss_pred             CCceEEEeCCCCCccccCCchHHHHHHHHhhh---cCEEEEecccCC-CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 021615          156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRR---TRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNK  231 (310)
Q Consensus       156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~---~d~il~VvD~s~-~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK  231 (310)
                      ...+.++|+||+++-... ...-.++.+|+.+   --+++|++|..= -+...-+.-.+..+...  -..+.|.|=|++|
T Consensus        97 eddylifDcPGQIELytH-~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAM--i~lE~P~INvlsK  173 (273)
T KOG1534|consen   97 EDDYLIFDCPGQIELYTH-LPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAM--ISLEVPHINVLSK  173 (273)
T ss_pred             cCCEEEEeCCCeeEEeec-ChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHH--HHhcCcchhhhhH
Confidence            357899999999984321 2334456666654   235677777542 11111111112222211  1147899999999


Q ss_pred             CCCCCc
Q 021615          232 IDLPEA  237 (310)
Q Consensus       232 ~Dl~~~  237 (310)
                      +|+...
T Consensus       174 MDLlk~  179 (273)
T KOG1534|consen  174 MDLLKD  179 (273)
T ss_pred             HHHhhh
Confidence            999875

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.95  E-value=0.00019  Score=59.07  Aligned_cols=56  Identities=23%  Similarity=0.284  Sum_probs=35.3

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  233 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D  233 (310)
                      .+.++||||....          +...+..||.+++|...+-   .+.+..+.-..       ...-=++++||+|
T Consensus        93 D~iiIDtaG~~~~----------~~~~~~~Ad~~ivv~tpe~---~D~y~~~k~~~-------~~~~~~~~~~k~~  148 (148)
T cd03114          93 DVIIVETVGVGQS----------EVDIASMADTTVVVMAPGA---GDDIQAIKAGI-------MEIADIVVVNKAD  148 (148)
T ss_pred             CEEEEECCccChh----------hhhHHHhCCEEEEEECCCc---hhHHHHhhhhH-------hhhcCEEEEeCCC
Confidence            7899999997532          2345568999999887762   23332222111       2334488899998

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.94  E-value=4.4e-05  Score=59.74  Aligned_cols=115  Identities=17%  Similarity=0.116  Sum_probs=64.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|..|+|||+|+.++.......  .+  |. +..                        |+.-..          .
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~--~~--~~-~t~------------------------~~~~~~----------~   41 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDY--VP--TV-FTI------------------------GIDVYD----------P   41 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccc--cC--ce-ehh------------------------hhhhcc----------c
Confidence            379999999999999999996543110  00  00 000                        011000          0


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccCccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETEL  262 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~  262 (310)
                      ...+.++.++.|+|.....+++..  |...+.....  .+.|.+++.||.|+....+......     ..+.+.+++++.
T Consensus        42 ~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k--~dl~~~~~~nk~dl~~~~~~~~~~~-----~~~~~~s~~~~~  112 (124)
T smart00010       42 TSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNK--SDLPILVGGNRDVLEEERQVATEEG-----LEFAETSAKTPE  112 (124)
T ss_pred             cccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCC--CCCcEEEEeechhhHhhCcCCHHHH-----HHHHHHhCCCcc
Confidence            123456788888888776655443  4444443322  3578899999999843211111111     123356788888


Q ss_pred             CHH
Q 021615          263 SSE  265 (310)
Q Consensus       263 gi~  265 (310)
                      ++.
T Consensus       113 ~~~  115 (124)
T smart00010      113 EGE  115 (124)
T ss_pred             hhh
Confidence            763

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.92  E-value=4.3e-05  Score=63.15  Aligned_cols=79  Identities=16%  Similarity=0.186  Sum_probs=51.9

Q ss_pred             CEEEEecccCCCCcHHHHHHHH-HHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-C--CCccccCccCCH
Q 021615          189 RLLVHVIDAAAENPVNDYRTVK-EELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-G--CDKVTSETELSS  264 (310)
Q Consensus       189 d~il~VvD~s~~~~~~~~~~~~-~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-g--~~~~sa~~~~gi  264 (310)
                      |++++|+|+.++...... .+. ..+..     .++|+++|+||+|+....+ ...+...+... +  +..+|++++.|+
T Consensus         1 Dvvl~VvD~~~p~~~~~~-~i~~~~~~~-----~~~p~IiVlNK~Dl~~~~~-~~~~~~~~~~~~~~~ii~vSa~~~~gi   73 (155)
T cd01849           1 DVILEVLDARDPLGTRSP-DIERVLIKE-----KGKKLILVLNKADLVPKEV-LRKWLAYLRHSYPTIPFKISATNGQGI   73 (155)
T ss_pred             CEEEEEEeccCCccccCH-HHHHHHHhc-----CCCCEEEEEechhcCCHHH-HHHHHHHHHhhCCceEEEEeccCCcCh
Confidence            789999999876544332 222 22322     3689999999999976532 33333333322 2  345899999999


Q ss_pred             HHHHHHHhhc
Q 021615          265 EDAVKSLSTE  274 (310)
Q Consensus       265 ~~l~~~l~~~  274 (310)
                      .++.+.+...
T Consensus        74 ~~L~~~i~~~   83 (155)
T cd01849          74 EKKESAFTKQ   83 (155)
T ss_pred             hhHHHHHHHH
Confidence            9999887543

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.90  E-value=2.9e-05  Score=65.87  Aligned_cols=84  Identities=24%  Similarity=0.377  Sum_probs=46.7

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                      ...++-+.|..+....  -+....+...-..+.++.|+|+..-...... ..+...+..        -=++|+||+|+.+
T Consensus        86 d~IiIE~sG~a~p~~l--~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~--------ADvIvlnK~D~~~  155 (178)
T PF02492_consen   86 DRIIIETSGLADPAPL--ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF--------ADVIVLNKIDLVS  155 (178)
T ss_dssp             SEEEEEEECSSGGGGH--HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT---------SEEEEE-GGGHH
T ss_pred             CEEEECCccccccchh--hhccccccccccccceeEEeccccccccccchhhhhhcchh--------cCEEEEeccccCC
Confidence            6789999997665332  0011112223356899999999653212222 333344432        2278899999987


Q ss_pred             cHhHHHHHHHHHHhc
Q 021615          237 ARDRLQSLTEEILKI  251 (310)
Q Consensus       237 ~~~~~~~l~~~l~~~  251 (310)
                      ..+..+.+.+.++.+
T Consensus       156 ~~~~i~~~~~~ir~l  170 (178)
T PF02492_consen  156 DEQKIERVREMIREL  170 (178)
T ss_dssp             HH--HHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHH
Confidence            653446666666544

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.89  E-value=4.5e-05  Score=71.85  Aligned_cols=161  Identities=15%  Similarity=0.143  Sum_probs=77.8

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-C--CCCCceeecc------------------ceEeeCCCCCC---CccC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-A--DYPFTTLMPN------------------LGRLDGDPTLG---AEKY  155 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~--~~~~tT~~~~------------------~~~v~~~~~~~---~~~~  155 (310)
                      ...-.++|+|++||||||++..|...-... +  ...+.|.+..                  ...+.....+.   ...-
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~  214 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR  214 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence            334568999999999999999997531100 0  0111111111                  00000000000   0000


Q ss_pred             CCceEEEeCCCCCccccCCchHHHHHHHHh---hhcCEEEEecccCCCCcHHHHHHHHHHHHhcC--CCC-CCCCEEEEE
Q 021615          156 SSEATLADLPGLIEGAHLGKGLGRNFLRHL---RRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDY-LERPFIVVL  229 (310)
Q Consensus       156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l---~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~--~~~-~~~p~ivv~  229 (310)
                      +..++++||||.....   ..+... +..+   ..+.-.++|++++...  +++..+........  +.. ...+-=+|+
T Consensus       215 ~~DlVLIDTaG~~~~d---~~l~e~-La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~  288 (374)
T PRK14722        215 NKHMVLIDTIGMSQRD---RTVSDQ-IAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCIL  288 (374)
T ss_pred             CCCEEEEcCCCCCccc---HHHHHH-HHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEE
Confidence            2378999999976432   222222 2223   2344568899987632  22222222222110  000 001235778


Q ss_pred             eCCCCCCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615          230 NKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVK  269 (310)
Q Consensus       230 NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~  269 (310)
                      +|.|-...   .-.+.......+++..-..+|+.+.+-+.
T Consensus       289 TKlDEt~~---~G~~l~~~~~~~lPi~yvt~Gq~VPedl~  325 (374)
T PRK14722        289 TKLDEASN---LGGVLDTVIRYKLPVHYVSTGQKVPENLY  325 (374)
T ss_pred             eccccCCC---ccHHHHHHHHHCcCeEEEecCCCCCcccc
Confidence            99997654   23344444555666655566666666443

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.89  E-value=5.7e-05  Score=73.76  Aligned_cols=97  Identities=21%  Similarity=0.211  Sum_probs=54.5

Q ss_pred             ceEEEeCCCCCccccCCchHHHH--HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~--~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .++|+||||......   .+...  .+.... ....++|+++..  ...++..+.+.+..      ..+.-+|+||+|..
T Consensus       430 DLVLIDTaG~s~~D~---~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~------~~~~gvILTKlDEt  497 (559)
T PRK12727        430 KLVLIDTAGMGQRDR---ALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAH------AKPQGVVLTKLDET  497 (559)
T ss_pred             CEEEecCCCcchhhH---HHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHh------hCCeEEEEecCcCc
Confidence            789999999864321   11111  122222 234567777763  23343333333322      24677999999986


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVK  269 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~  269 (310)
                      ..   .-.+...+...+++..-...|+.+.+-+.
T Consensus       498 ~~---lG~aLsv~~~~~LPI~yvt~GQ~VPeDL~  528 (559)
T PRK12727        498 GR---FGSALSVVVDHQMPITWVTDGQRVPDDLH  528 (559)
T ss_pred             cc---hhHHHHHHHHhCCCEEEEeCCCCchhhhh
Confidence            43   34455555566676666667777754443

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.89  E-value=3e-05  Score=70.88  Aligned_cols=97  Identities=16%  Similarity=0.275  Sum_probs=64.6

Q ss_pred             eCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHH
Q 021615          163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ  242 (310)
Q Consensus       163 DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~  242 (310)
                      -.||+...      ..+++.+.++.+|++++|+|+..+...++ ..+.+.+       .++|+++|+||+|+.+. +..+
T Consensus         6 wfpgHm~k------~~~~l~~~l~~aDvIL~VvDar~p~~~~~-~~l~~~~-------~~kp~iiVlNK~DL~~~-~~~~   70 (287)
T PRK09563          6 WFPGHMAK------ARREIKENLKLVDVVIEVLDARIPLSSEN-PMIDKII-------GNKPRLLILNKSDLADP-EVTK   70 (287)
T ss_pred             CcHHHHHH------HHHHHHHHhhhCCEEEEEEECCCCCCCCC-hhHHHHh-------CCCCEEEEEEchhcCCH-HHHH
Confidence            45777543      23456778899999999999976544332 1122222       26899999999999754 3234


Q ss_pred             HHHHHHHhcC--CCccccCccCCHHHHHHHHhhc
Q 021615          243 SLTEEILKIG--CDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       243 ~l~~~l~~~g--~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                      .+.+.+...+  +..+|++.+.|+.++...+...
T Consensus        71 ~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~  104 (287)
T PRK09563         71 KWIEYFEEQGIKALAINAKKGQGVKKILKAAKKL  104 (287)
T ss_pred             HHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHH
Confidence            4555554433  3557999999999998876544

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.86  E-value=5.7e-05  Score=69.05  Aligned_cols=83  Identities=17%  Similarity=0.099  Sum_probs=59.1

Q ss_pred             hhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC--CCccccCcc
Q 021615          185 LRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTSETE  261 (310)
Q Consensus       185 l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g--~~~~sa~~~  261 (310)
                      +.++|++++|+|+.++. +...++.++..+..     .++|.++|+||+|+.+..+. ..........+  +..+|++++
T Consensus        76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~-----~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~g~~v~~vSA~~g  149 (287)
T cd01854          76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA-----AGIEPVIVLTKADLLDDEEE-ELELVEALALGYPVLAVSAKTG  149 (287)
T ss_pred             EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH-----cCCCEEEEEEHHHCCChHHH-HHHHHHHHhCCCeEEEEECCCC
Confidence            46899999999998876 55666666655554     36899999999999765321 22222233344  345899999


Q ss_pred             CCHHHHHHHHhh
Q 021615          262 LSSEDAVKSLST  273 (310)
Q Consensus       262 ~gi~~l~~~l~~  273 (310)
                      .|+++++..+..
T Consensus       150 ~gi~~L~~~L~~  161 (287)
T cd01854         150 EGLDELREYLKG  161 (287)
T ss_pred             ccHHHHHhhhcc
Confidence            999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=97.82  E-value=0.00029  Score=68.08  Aligned_cols=143  Identities=22%  Similarity=0.246  Sum_probs=81.7

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCC-------------------------------
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDP-------------------------------  148 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~-------------------------------  148 (310)
                      .+++|++||.-.+||||.+..+..+..-. +.-.-.|..|...++.-.|                               
T Consensus       307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R  386 (980)
T KOG0447|consen  307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR  386 (980)
T ss_pred             cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence            56899999999999999999998765322 2222223333222221000                               


Q ss_pred             -------------------CCCCccCCCceEEEeCCCCCcccc-----C-CchHHHHHHHHhhhcCEEEEecccCCCCcH
Q 021615          149 -------------------TLGAEKYSSEATLADLPGLIEGAH-----L-GKGLGRNFLRHLRRTRLLVHVIDAAAENPV  203 (310)
Q Consensus       149 -------------------~~~~~~~~~~~~i~DtPG~~~~~~-----~-~~~l~~~~~~~l~~~d~il~VvD~s~~~~~  203 (310)
                                         ..+. . -.+.+++|.||.+....     . ...+.+.-..|+.+.++||+++--.+-+..
T Consensus       387 Mr~sVr~GkTVSnEvIsltVKGP-g-LqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE  464 (980)
T KOG0447|consen  387 MRKNVKEGCTVSPETISLNVKGP-G-LQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE  464 (980)
T ss_pred             HHhcccCCcccccceEEEeecCC-C-cceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence                               0000 0 03578999999987522     1 123444455677888888888743222211


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc-HhHHHHHHHHHH
Q 021615          204 NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-RDRLQSLTEEIL  249 (310)
Q Consensus       204 ~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~-~~~~~~l~~~l~  249 (310)
                        ...+-..+...++  .++..|+|++|.|+.+. -.....+.+.++
T Consensus       465 --RSnVTDLVsq~DP--~GrRTIfVLTKVDlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  465 --RSIVTDLVSQMDP--HGRRTIFVLTKVDLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             --hhhHHHHHHhcCC--CCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence              1122233344444  67889999999999754 122345555544

>PRK14974 cell division protein FtsY; Provisional

Probab=97.81  E-value=0.00013  Score=68.08  Aligned_cols=98  Identities=18%  Similarity=0.159  Sum_probs=52.8

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHH--HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~--~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .++++||||.....   ..+-..+..  ..-..|.+++|+|+....  +...........      -..--+++||+|..
T Consensus       224 DvVLIDTaGr~~~~---~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~------~~~~giIlTKlD~~  292 (336)
T PRK14974        224 DVVLIDTAGRMHTD---ANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEA------VGIDGVILTKVDAD  292 (336)
T ss_pred             CEEEEECCCccCCc---HHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhc------CCCCEEEEeeecCC
Confidence            58999999986532   122222111  122468899999997532  222222211111      12356789999986


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVK  269 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~  269 (310)
                      ..--..   .......+.+..-..+|++++++..
T Consensus       293 ~~~G~~---ls~~~~~~~Pi~~i~~Gq~v~Dl~~  323 (336)
T PRK14974        293 AKGGAA---LSIAYVIGKPILFLGVGQGYDDLIP  323 (336)
T ss_pred             CCccHH---HHHHHHHCcCEEEEeCCCChhhccc
Confidence            543222   2222334555544558888866553

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.79  E-value=0.00013  Score=62.88  Aligned_cols=95  Identities=15%  Similarity=0.035  Sum_probs=51.8

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .++++||||..........--..+...+ ..+-+++|+|++..  .+++..+.......      .+-=++++|.|-...
T Consensus        85 D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~--~~~~~~~~~~~~~~------~~~~lIlTKlDet~~  155 (196)
T PF00448_consen   85 DLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMG--QEDLEQALAFYEAF------GIDGLILTKLDETAR  155 (196)
T ss_dssp             SEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGG--GHHHHHHHHHHHHS------STCEEEEESTTSSST
T ss_pred             CEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccC--hHHHHHHHHHhhcc------cCceEEEEeecCCCC
Confidence            5899999998654221111112333333 46788999998853  33444443333321      233566999998654


Q ss_pred             HhHHHHHHHHHHhcCCCccccCccCCH
Q 021615          238 RDRLQSLTEEILKIGCDKVTSETELSS  264 (310)
Q Consensus       238 ~~~~~~l~~~l~~~g~~~~sa~~~~gi  264 (310)
                      -   -.+.......+.+..-..+|+.+
T Consensus       156 ~---G~~l~~~~~~~~Pi~~it~Gq~V  179 (196)
T PF00448_consen  156 L---GALLSLAYESGLPISYITTGQRV  179 (196)
T ss_dssp             T---HHHHHHHHHHTSEEEEEESSSST
T ss_pred             c---ccceeHHHHhCCCeEEEECCCCh
Confidence            3   23344445555555555556555

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.79  E-value=0.00017  Score=66.78  Aligned_cols=82  Identities=28%  Similarity=0.349  Sum_probs=52.1

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHH-----HhhhcCEEEEecccCCCCcHHH--HHHHHHHHHhcCCCCCCCCEEEEEe
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLR-----HLRRTRLLVHVIDAAAENPVND--YRTVKEELRMYNPDYLERPFIVVLN  230 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~-----~l~~~d~il~VvD~s~~~~~~~--~~~~~~~l~~~~~~~~~~p~ivv~N  230 (310)
                      ...++-|-|+-+..    .+...|..     ..-.-|.++-|||+........  .+....++..        .=++|+|
T Consensus        86 D~ivIEtTGlA~P~----pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~--------AD~ivlN  153 (323)
T COG0523          86 DRLVIETTGLADPA----PVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF--------ADVIVLN  153 (323)
T ss_pred             CEEEEeCCCCCCCH----HHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh--------CcEEEEe
Confidence            57899999987652    23333332     1124588999999987433221  2334444443        2288899


Q ss_pred             CCCCCCcHhHHHHHHHHHHhcC
Q 021615          231 KIDLPEARDRLQSLTEEILKIG  252 (310)
Q Consensus       231 K~Dl~~~~~~~~~l~~~l~~~g  252 (310)
                      |+|+.++.+ .+.+.+.+..+.
T Consensus       154 K~Dlv~~~~-l~~l~~~l~~ln  174 (323)
T COG0523         154 KTDLVDAEE-LEALEARLRKLN  174 (323)
T ss_pred             cccCCCHHH-HHHHHHHHHHhC
Confidence            999998764 777777777654

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.78  E-value=0.00017  Score=69.44  Aligned_cols=99  Identities=16%  Similarity=0.185  Sum_probs=56.6

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhh---hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLR---RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  234 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~---~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl  234 (310)
                      .++|+||||.....   ......+...+.   ...-..+|++++.  ...++..+.   ..|..  .+ +--++++|+|-
T Consensus       301 DlVlIDt~G~~~~d---~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~---~~f~~--~~-~~~vI~TKlDe  369 (424)
T PRK05703        301 DVILIDTAGRSQRD---KRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIY---KHFSR--LP-LDGLIFTKLDE  369 (424)
T ss_pred             CEEEEeCCCCCCCC---HHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHH---HHhCC--CC-CCEEEEecccc
Confidence            78999999985432   112222222222   2345677788763  223333333   33321  11 23578999998


Q ss_pred             CCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHH
Q 021615          235 PEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKS  270 (310)
Q Consensus       235 ~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~  270 (310)
                      ...   .-.+...+...+++..-..+|.++.+-+..
T Consensus       370 t~~---~G~i~~~~~~~~lPv~yit~Gq~VpdDl~~  402 (424)
T PRK05703        370 TSS---LGSILSLLIESGLPISYLTNGQRVPDDIKV  402 (424)
T ss_pred             ccc---ccHHHHHHHHHCCCEEEEeCCCCChhhhhh
Confidence            644   334566666777877777788887555543

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.75  E-value=0.00019  Score=67.88  Aligned_cols=99  Identities=12%  Similarity=0.088  Sum_probs=55.1

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHh--hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l--~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .++|+||||.....   ...-....+.+  ...+.+++|+|++..  ..+..   +.+..|..  . ..-=++++|.|-.
T Consensus       322 DvVLIDTaGRs~kd---~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~---~i~~~F~~--~-~idglI~TKLDET  390 (436)
T PRK11889        322 DYILIDTAGKNYRA---SETVEEMIETMGQVEPDYICLTLSASMK--SKDMI---EIITNFKD--I-HIDGIVFTKFDET  390 (436)
T ss_pred             CEEEEeCccccCcC---HHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHH---HHHHHhcC--C-CCCEEEEEcccCC
Confidence            68999999985432   22222222222  234678888988632  22322   33344432  1 2345778999987


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVKS  270 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~  270 (310)
                      ..-   =.+.......+++..-...|+++.+-+..
T Consensus       391 ~k~---G~iLni~~~~~lPIsyit~GQ~VPeDI~~  422 (436)
T PRK11889        391 ASS---GELLKIPAVSSAPIVLMTDGQDVKKNIHI  422 (436)
T ss_pred             CCc---cHHHHHHHHHCcCEEEEeCCCCCCcchhh
Confidence            542   23334444556666666677777766654

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.75  E-value=0.0001  Score=68.96  Aligned_cols=80  Identities=26%  Similarity=0.308  Sum_probs=47.9

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHH-Hh---hhcCEEEEecccCCCCc--H--------------------HH-HHHHH
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLR-HL---RRTRLLVHVIDAAAENP--V--------------------ND-YRTVK  210 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~-~l---~~~d~il~VvD~s~~~~--~--------------------~~-~~~~~  210 (310)
                      ...++.|.|.-+.    ..+...|.. .+   -+.|.++.|+|+.....  +                    .. ...+.
T Consensus        94 d~IvIEtsG~a~P----~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (341)
T TIGR02475        94 DHILIETSGLALP----KPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFE  169 (341)
T ss_pred             CEEEEeCCCCCCH----HHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHH
Confidence            6789999998764    334444421 11   24688999999974211  0                    00 01222


Q ss_pred             HHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh
Q 021615          211 EELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK  250 (310)
Q Consensus       211 ~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~  250 (310)
                      .++..        .=++|+||+|+.++. ..+.+.+.+..
T Consensus       170 ~Qi~~--------AD~IvlnK~Dl~~~~-~l~~~~~~l~~  200 (341)
T TIGR02475       170 DQLAC--------ADLVILNKADLLDAA-GLARVRAEIAA  200 (341)
T ss_pred             HHHHh--------CCEEEEeccccCCHH-HHHHHHHHHHH
Confidence            33332        237889999999764 46677777765

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK12288 GTPase RsgA; Reviewed

Probab=97.74  E-value=0.00019  Score=67.35  Aligned_cols=83  Identities=23%  Similarity=0.158  Sum_probs=60.2

Q ss_pred             hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--HHHHHHHHHHhcCC--CccccCcc
Q 021615          186 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIGC--DKVTSETE  261 (310)
Q Consensus       186 ~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~l~~~l~~~g~--~~~sa~~~  261 (310)
                      .++|.+++|++......+..++.|+.....     .++|.++|+||+|+.+..+  ....+.+.+...++  ..+|++++
T Consensus       119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~-----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg  193 (347)
T PRK12288        119 ANIDQIVIVSAVLPELSLNIIDRYLVACET-----LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG  193 (347)
T ss_pred             EEccEEEEEEeCCCCCCHHHHHHHHHHHHh-----cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            568999999998766666666666554432     4689999999999986432  23344445555554  44799999


Q ss_pred             CCHHHHHHHHhh
Q 021615          262 LSSEDAVKSLST  273 (310)
Q Consensus       262 ~gi~~l~~~l~~  273 (310)
                      .|+++++..+..
T Consensus       194 ~GideL~~~L~~  205 (347)
T PRK12288        194 EGLEELEAALTG  205 (347)
T ss_pred             cCHHHHHHHHhh
Confidence            999999998864

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.71  E-value=0.00042  Score=66.39  Aligned_cols=97  Identities=11%  Similarity=0.137  Sum_probs=55.1

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhh---hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLR---RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  234 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~---~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl  234 (310)
                      .+.++||+|.....   ..+... +..+.   ...-.++|+|++..  .+++.   +.+..|..   -..-=++++|.|-
T Consensus       271 d~VLIDTaGrsqrd---~~~~~~-l~~l~~~~~~~~~~LVl~at~~--~~~~~---~~~~~f~~---~~~~~~I~TKlDE  338 (420)
T PRK14721        271 HMVLIDTVGMSQRD---QMLAEQ-IAMLSQCGTQVKHLLLLNATSS--GDTLD---EVISAYQG---HGIHGCIITKVDE  338 (420)
T ss_pred             CEEEecCCCCCcch---HHHHHH-HHHHhccCCCceEEEEEcCCCC--HHHHH---HHHHHhcC---CCCCEEEEEeeeC
Confidence            67999999986532   112222 22232   23456788888742  23333   33344432   1234577899997


Q ss_pred             CCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615          235 PEARDRLQSLTEEILKIGCDKVTSETELSSEDAVK  269 (310)
Q Consensus       235 ~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~  269 (310)
                      ...   .-.+...+...+++..-..+|..+.+-+.
T Consensus       339 t~~---~G~~l~~~~~~~lPi~yvt~Gq~VP~Dl~  370 (420)
T PRK14721        339 AAS---LGIALDAVIRRKLVLHYVTNGQKVPEDLH  370 (420)
T ss_pred             CCC---ccHHHHHHHHhCCCEEEEECCCCchhhhh
Confidence            654   33444555566677766777888755443

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.69  E-value=0.00016  Score=67.20  Aligned_cols=73  Identities=16%  Similarity=0.229  Sum_probs=48.8

Q ss_pred             CceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcH----------HHHHHHHHHHHhcCCCCCCCCEE
Q 021615          157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV----------NDYRTVKEELRMYNPDYLERPFI  226 (310)
Q Consensus       157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~----------~~~~~~~~~l~~~~~~~~~~p~i  226 (310)
                      ..+.+.|++|+..       -.+.|...++.+++++||++.++.+..          .....+.+.+-. .+-..+.++|
T Consensus       195 ~~f~~~DvGGQRs-------eRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n-~~~F~~tsii  266 (354)
T KOG0082|consen  195 LKFRMFDVGGQRS-------ERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN-NKWFANTSII  266 (354)
T ss_pred             CceEEEeCCCcHH-------HhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc-CcccccCcEE
Confidence            3688999999743       344666778999999999999873211          111223333332 2234578999


Q ss_pred             EEEeCCCCCCc
Q 021615          227 VVLNKIDLPEA  237 (310)
Q Consensus       227 vv~NK~Dl~~~  237 (310)
                      +++||.|+..+
T Consensus       267 LFLNK~DLFeE  277 (354)
T KOG0082|consen  267 LFLNKKDLFEE  277 (354)
T ss_pred             EEeecHHHHHH
Confidence            99999999753

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.69  E-value=0.00011  Score=49.78  Aligned_cols=43  Identities=28%  Similarity=0.482  Sum_probs=28.8

Q ss_pred             cCEEEEecccCC--CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615          188 TRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  233 (310)
Q Consensus       188 ~d~il~VvD~s~--~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D  233 (310)
                      .++++|++|.|.  +.+.++-..++++++..-   .++|+++|+||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F---~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF---PNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT---TTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc---CCCCEEEEEeccC
Confidence            579999999987  556666667778887643   4899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.69  E-value=0.00021  Score=62.46  Aligned_cols=44  Identities=27%  Similarity=0.393  Sum_probs=29.6

Q ss_pred             hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCC-CCEEEEEeCCCCC
Q 021615          186 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE-RPFIVVLNKIDLP  235 (310)
Q Consensus       186 ~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~-~p~ivv~NK~Dl~  235 (310)
                      +.+|.++.|+|.+.. +....+.+.+....     .+ +++.+|+||+|-.
T Consensus       154 ~~vD~vivVvDpS~~-sl~taeri~~L~~e-----lg~k~i~~V~NKv~e~  198 (255)
T COG3640         154 EGVDLVIVVVDPSYK-SLRTAERIKELAEE-----LGIKRIFVVLNKVDEE  198 (255)
T ss_pred             cCCCEEEEEeCCcHH-HHHHHHHHHHHHHH-----hCCceEEEEEeeccch
Confidence            578999999999853 33333434322222     24 8899999999965

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.67  E-value=0.00013  Score=67.53  Aligned_cols=136  Identities=16%  Similarity=0.195  Sum_probs=71.0

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCC----CCC-CCCCC-ceeec------cceEeeCC-----CCCC------------
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAK----PDI-ADYPF-TTLMP------NLGRLDGD-----PTLG------------  151 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~----~~i-~~~~~-tT~~~------~~~~v~~~-----~~~~------------  151 (310)
                      .++-.+|.|+-|||||||+|+++...    ..+ .+..+ ..++.      ....+...     +...            
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~   82 (318)
T PRK11537          3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD   82 (318)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence            45667889999999999999998542    111 12111 11100      00111100     0000            


Q ss_pred             ---CccCCCceEEEeCCCCCccccCCchHHHHHHH--Hh---hhcCEEEEecccCCCCc-HHHHHHHHHHHHhcCCCCCC
Q 021615          152 ---AEKYSSEATLADLPGLIEGAHLGKGLGRNFLR--HL---RRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLE  222 (310)
Q Consensus       152 ---~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~--~l---~~~d~il~VvD~s~~~~-~~~~~~~~~~l~~~~~~~~~  222 (310)
                         ...+.....++.|.|.-+.    ..+...|+.  .+   -+.+.++.|+|+..... .........++..       
T Consensus        83 ~~~~~~~~~d~IvIEttG~a~p----~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------  151 (318)
T PRK11537         83 NLDKGNIQFDRLVIECTGMADP----GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-------  151 (318)
T ss_pred             HHhccCCCCCEEEEECCCccCH----HHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------
Confidence               0001235688999998654    233333321  11   23588999999975221 1112223334432       


Q ss_pred             CCEEEEEeCCCCCCcHhHHHHHHHHHHhc
Q 021615          223 RPFIVVLNKIDLPEARDRLQSLTEEILKI  251 (310)
Q Consensus       223 ~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~  251 (310)
                       .=++|+||+|+.++.   +.+.+.++.+
T Consensus       152 -AD~IvlnK~Dl~~~~---~~~~~~l~~l  176 (318)
T PRK11537        152 -ADRILLTKTDVAGEA---EKLRERLARI  176 (318)
T ss_pred             -CCEEEEeccccCCHH---HHHHHHHHHh
Confidence             227889999998753   4555555543

>cd00066 G-alpha G protein alpha subunit

Probab=97.67  E-value=0.0001  Score=68.29  Aligned_cols=71  Identities=14%  Similarity=0.231  Sum_probs=49.9

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC----------cHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN----------PVNDYRTVKEELRMYNPDYLERPFIV  227 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~----------~~~~~~~~~~~l~~~~~~~~~~p~iv  227 (310)
                      .+.+||++|+..       ..+.|..+++.+++++||+|.++.+          ...+...+.+.+-. .+.+.+.|+++
T Consensus       162 ~~~~~DvgGq~~-------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~-~~~~~~~pill  233 (317)
T cd00066         162 KFRMFDVGGQRS-------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN-SRWFANTSIIL  233 (317)
T ss_pred             EEEEECCCCCcc-------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh-CccccCCCEEE
Confidence            689999999843       3446777889999999999998742          22233333333332 23345799999


Q ss_pred             EEeCCCCCC
Q 021615          228 VLNKIDLPE  236 (310)
Q Consensus       228 v~NK~Dl~~  236 (310)
                      ++||.|+..
T Consensus       234 ~~NK~D~f~  242 (317)
T cd00066         234 FLNKKDLFE  242 (317)
T ss_pred             EccChHHHH
Confidence            999999874

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.64  E-value=0.00047  Score=57.88  Aligned_cols=71  Identities=15%  Similarity=0.117  Sum_probs=38.9

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .+.++||||...........-..+ ......+.+++|+|+...  .+..+........     .+ ..-+|+||+|....
T Consensus        84 d~viiDt~g~~~~~~~~l~~l~~l-~~~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~-----~~-~~~viltk~D~~~~  154 (173)
T cd03115          84 DVVIVDTAGRLQIDENLMEELKKI-KRVVKPDEVLLVVDAMTG--QDAVNQAKAFNEA-----LG-ITGVILTKLDGDAR  154 (173)
T ss_pred             CEEEEECcccchhhHHHHHHHHHH-HhhcCCCeEEEEEECCCC--hHHHHHHHHHHhh-----CC-CCEEEEECCcCCCC
Confidence            589999999753211000001112 222348999999998643  2333333222222     12 35677899998764

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.62  E-value=0.00034  Score=66.70  Aligned_cols=102  Identities=14%  Similarity=0.043  Sum_probs=54.8

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhh--hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~--~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .++++||||..........--..+++...  ...-.++|+|++...  ++..   +.+..|..  . .+-=+|++|.|-.
T Consensus       301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~---~~~~~f~~--~-~~~glIlTKLDEt  372 (432)
T PRK12724        301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTL---TVLKAYES--L-NYRRILLTKLDEA  372 (432)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHH---HHHHHhcC--C-CCCEEEEEcccCC
Confidence            68999999986432211111112222221  123578899987542  2222   33334321  1 2346778999976


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVKS  270 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~  270 (310)
                      ..-   =.+.......+.+..-...|+++.+-+..
T Consensus       373 ~~~---G~il~i~~~~~lPI~ylt~GQ~VPeDi~~  404 (432)
T PRK12724        373 DFL---GSFLELADTYSKSFTYLSVGQEVPFDILN  404 (432)
T ss_pred             CCc---cHHHHHHHHHCCCEEEEecCCCCCCCHHH
Confidence            542   23344445566666666667777665544

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.60  E-value=0.00036  Score=65.70  Aligned_cols=95  Identities=11%  Similarity=-0.017  Sum_probs=51.3

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHH--hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~--l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .++|+||||.....   ...-......  ....+.+++|+++..  ...+..   +.+..|..   -.+--++++|.|-.
T Consensus       287 D~VLIDTAGr~~~d---~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~---~i~~~f~~---l~i~glI~TKLDET  355 (407)
T PRK12726        287 DHILIDTVGRNYLA---EESVSEISAYTDVVHPDLTCFTFSSGM--KSADVM---TILPKLAE---IPIDGFIITKMDET  355 (407)
T ss_pred             CEEEEECCCCCccC---HHHHHHHHHHhhccCCceEEEECCCcc--cHHHHH---HHHHhcCc---CCCCEEEEEcccCC
Confidence            78999999985432   1111121111  123467778887642  222322   33334432   12346779999986


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSED  266 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~  266 (310)
                      ..   .=.+.......+.+..-...|+.+.+
T Consensus       356 ~~---~G~~Lsv~~~tglPIsylt~GQ~Vpd  383 (407)
T PRK12726        356 TR---IGDLYTVMQETNLPVLYMTDGQNITE  383 (407)
T ss_pred             CC---ccHHHHHHHHHCCCEEEEecCCCCCc
Confidence            54   23334444556666666666776665

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.58  E-value=0.00013  Score=68.89  Aligned_cols=81  Identities=19%  Similarity=0.242  Sum_probs=54.5

Q ss_pred             hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHH-HHHHHHHhcCC-----Cc
Q 021615          185 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQ-SLTEEILKIGC-----DK  255 (310)
Q Consensus       185 l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~-~l~~~l~~~g~-----~~  255 (310)
                      ...++++++|+|+.+...     .|..++..+.   .++|+++|+||+|+.....   ... .+.+.+...++     ..
T Consensus        61 ~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~---~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~  132 (360)
T TIGR03597        61 GDSNALIVYVVDIFDFEG-----SLIPELKRFV---GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIIL  132 (360)
T ss_pred             ccCCcEEEEEEECcCCCC-----CccHHHHHHh---CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEE
Confidence            467899999999976431     1333444432   2689999999999975422   222 22234455554     34


Q ss_pred             cccCccCCHHHHHHHHhh
Q 021615          256 VTSETELSSEDAVKSLST  273 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~  273 (310)
                      +||+++.|+++++..+..
T Consensus       133 vSAk~g~gv~eL~~~l~~  150 (360)
T TIGR03597       133 VSAKKGNGIDELLDKIKK  150 (360)
T ss_pred             ecCCCCCCHHHHHHHHHH
Confidence            899999999999999864

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.58  E-value=0.0016  Score=52.83  Aligned_cols=106  Identities=21%  Similarity=0.219  Sum_probs=59.7

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhh
Q 021615          107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR  186 (310)
Q Consensus       107 lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~  186 (310)
                      .-+.+|+||||+--.+...-...   ...+     ..++.+...+...|  .++++|+|+....         .....+.
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~---~~~~-----~~vd~D~~~~~~~y--d~VIiD~p~~~~~---------~~~~~l~   65 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKL---GKRV-----LLLDADLGLANLDY--DYIIIDTGAGISD---------NVLDFFL   65 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHC---CCcE-----EEEECCCCCCCCCC--CEEEEECCCCCCH---------HHHHHHH
Confidence            34789999999877665331100   0111     11222211111112  7899999986432         2234566


Q ss_pred             hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          187 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       187 ~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .||.+++|++.+... ..+.....+.+....   ...++.+|+|+++..
T Consensus        66 ~aD~vviv~~~~~~s-~~~~~~~l~~l~~~~---~~~~~~lVvN~~~~~  110 (139)
T cd02038          66 AADEVIVVTTPEPTS-ITDAYALIKKLAKQL---RVLNFRVVVNRAESP  110 (139)
T ss_pred             hCCeEEEEcCCChhH-HHHHHHHHHHHHHhc---CCCCEEEEEeCCCCH
Confidence            899999999987433 333333444454321   245678999999754

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.00022  Score=66.07  Aligned_cols=140  Identities=23%  Similarity=0.268  Sum_probs=75.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCC--------------CCCceeeccceEeeCCCCCCCccC-------------C
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIAD--------------YPFTTLMPNLGRLDGDPTLGAEKY-------------S  156 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~--------------~~~tT~~~~~~~v~~~~~~~~~~~-------------~  156 (310)
                      +|+++|--.+|||||+-.|+..+..-++              ..+.|.......+..+..-....|             .
T Consensus       169 RvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SS  248 (591)
T KOG1143|consen  169 RVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSS  248 (591)
T ss_pred             EEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhc
Confidence            6999999999999999999865421110              001111110001111100000111             1


Q ss_pred             CceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                      +-++++|.+|+.++.+-..   ...-.  ...|..++|+.+.....+...+.+- .+..     .+.|++++++|+|+.+
T Consensus       249 KlvTfiDLAGh~kY~~TTi---~gLtg--Y~Ph~A~LvVsA~~Gi~~tTrEHLg-l~~A-----L~iPfFvlvtK~Dl~~  317 (591)
T KOG1143|consen  249 KLVTFIDLAGHAKYQKTTI---HGLTG--YTPHFACLVVSADRGITWTTREHLG-LIAA-----LNIPFFVLVTKMDLVD  317 (591)
T ss_pred             ceEEEeecccchhhheeee---eeccc--CCCceEEEEEEcCCCCccccHHHHH-HHHH-----hCCCeEEEEEeecccc
Confidence            3589999999876532100   00011  1347788888887765544433332 2222     4799999999999987


Q ss_pred             c---HhHHHHHHHHHHhcCCC
Q 021615          237 A---RDRLQSLTEEILKIGCD  254 (310)
Q Consensus       237 ~---~~~~~~l~~~l~~~g~~  254 (310)
                      .   +....++...+...|+.
T Consensus       318 ~~~~~~tv~~l~nll~~~Gc~  338 (591)
T KOG1143|consen  318 RQGLKKTVKDLSNLLAKAGCT  338 (591)
T ss_pred             chhHHHHHHHHHHHHhhcCcc
Confidence            6   23344455555444443

>smart00275 G_alpha G protein alpha subunit

Probab=97.58  E-value=0.00022  Score=66.80  Aligned_cols=71  Identities=15%  Similarity=0.223  Sum_probs=50.2

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC----------cHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN----------PVNDYRTVKEELRMYNPDYLERPFIV  227 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~----------~~~~~~~~~~~l~~~~~~~~~~p~iv  227 (310)
                      .+.+||+.|+..       ..+.|..++..+++++||+|.++.+          ...+...+++.+-. .+.+.+.|+++
T Consensus       185 ~~~~~DvgGqr~-------~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~-~~~~~~~piil  256 (342)
T smart00275      185 FFRMFDVGGQRS-------ERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN-SRWFANTSIIL  256 (342)
T ss_pred             EEEEEecCCchh-------hhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc-CccccCCcEEE
Confidence            678999999843       3456777889999999999999732          23333333344433 23446799999


Q ss_pred             EEeCCCCCC
Q 021615          228 VLNKIDLPE  236 (310)
Q Consensus       228 v~NK~Dl~~  236 (310)
                      ++||.|+..
T Consensus       257 ~~NK~D~~~  265 (342)
T smart00275      257 FLNKIDLFE  265 (342)
T ss_pred             EEecHHhHH
Confidence            999999874

Subunit of G proteins that contains the guanine nucleotide binding site

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.55  E-value=0.00071  Score=65.78  Aligned_cols=53  Identities=19%  Similarity=0.179  Sum_probs=35.9

Q ss_pred             CCCEEEEEeCCCCCCc--------HhHHHHHHHHHH----hcC--CCccccCccCCHHHHHHHHhhc
Q 021615          222 ERPFIVVLNKIDLPEA--------RDRLQSLTEEIL----KIG--CDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       222 ~~p~ivv~NK~Dl~~~--------~~~~~~l~~~l~----~~g--~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                      +.|++||++|+|....        ++.++-+...++    .+|  +..+|++...++.-++.++...
T Consensus       196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~  262 (472)
T PF05783_consen  196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR  262 (472)
T ss_pred             CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence            5799999999997431        233444444454    334  4557999999998888776543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK01889 GTPase RsgA; Reviewed

Probab=97.53  E-value=8.6e-05  Score=69.93  Aligned_cols=27  Identities=33%  Similarity=0.391  Sum_probs=23.4

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +..-.++++|.+|+|||||+|.|.+..
T Consensus       193 ~~g~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        193 SGGKTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             hcCCEEEEECCCCccHHHHHHHHHHhc
Confidence            344579999999999999999999864

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.51  E-value=0.0018  Score=49.97  Aligned_cols=104  Identities=20%  Similarity=0.239  Sum_probs=59.4

Q ss_pred             EEEE-cCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          105 VGLV-GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       105 V~lv-G~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      |+++ +..|+||||+...|...-....       ......++.++...     ..+.++|||+....         ....
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~-------~~~~~l~d~d~~~~-----~D~IIiDtpp~~~~---------~~~~   60 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEA-------GRRVLLVDLDLQFG-----DDYVVVDLGRSLDE---------VSLA   60 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcC-------CCcEEEEECCCCCC-----CCEEEEeCCCCcCH---------HHHH
Confidence            3444 4589999998877764321110       11111233332211     26899999987542         2234


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK  231 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK  231 (310)
                      .+..||.+++|++.+. ........+.+.++..... ....+.+|+|+
T Consensus        61 ~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~~~~-~~~~~~lVvNr  106 (106)
T cd03111          61 ALDQADRVFLVTQQDL-PSIRNAKRLLELLRVLDYS-LPAKIELVLNR  106 (106)
T ss_pred             HHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHcCCC-CcCceEEEecC
Confidence            5668999999998774 3344455555666554321 13467788885

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.49  E-value=0.00056  Score=69.78  Aligned_cols=96  Identities=13%  Similarity=0.104  Sum_probs=52.0

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHH--HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFL--RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~--~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .++|+||||.....   ..+.....  ......+-.++|+|++..  .+++.   +.++.|.....-.+-=+|++|.|-.
T Consensus       265 D~VLIDTAGRs~~d---~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~---~i~~~f~~~~~~~i~glIlTKLDEt  336 (767)
T PRK14723        265 HLVLIDTVGMSQRD---RNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLN---EVVHAYRHGAGEDVDGCIITKLDEA  336 (767)
T ss_pred             CEEEEeCCCCCccC---HHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHH---HHHHHHhhcccCCCCEEEEeccCCC
Confidence            68999999965432   22222221  112234567899998742  33333   2333432110012346779999977


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSS  264 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi  264 (310)
                      ..-   =.+.......+++..-..+|+++
T Consensus       337 ~~~---G~iL~i~~~~~lPI~yit~GQ~V  362 (767)
T PRK14723        337 THL---GPALDTVIRHRLPVHYVSTGQKV  362 (767)
T ss_pred             CCc---cHHHHHHHHHCCCeEEEecCCCC
Confidence            542   23344445556666666677777

>PRK13796 GTPase YqeH; Provisional

Probab=97.49  E-value=0.00032  Score=66.29  Aligned_cols=86  Identities=17%  Similarity=0.282  Sum_probs=56.7

Q ss_pred             HHHHhhhcC-EEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH---hHHHHH-HHHHHhcCC--
Q 021615          181 FLRHLRRTR-LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSL-TEEILKIGC--  253 (310)
Q Consensus       181 ~~~~l~~~d-~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~~~l-~~~l~~~g~--  253 (310)
                      .++.+...+ ++++|+|+.+..     ..|..++..+.   .++|+++|+||+|+....   +....+ .......++  
T Consensus        62 ~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~---~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~  133 (365)
T PRK13796         62 LLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV---GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRP  133 (365)
T ss_pred             HHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh---CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCc
Confidence            456666666 999999998733     12334454432   268999999999997532   122222 223344444  


Q ss_pred             ---CccccCccCCHHHHHHHHhhc
Q 021615          254 ---DKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       254 ---~~~sa~~~~gi~~l~~~l~~~  274 (310)
                         ..+||+.+.|+++++..+...
T Consensus       134 ~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        134 VDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHh
Confidence               458999999999999998543

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.46  E-value=0.00022  Score=64.37  Aligned_cols=110  Identities=12%  Similarity=0.100  Sum_probs=66.1

Q ss_pred             CceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                      +.+.++|+||+.--       -..++.-..--|+.++++.+....+..+...-+..++..    .-+.++++-||+|+..
T Consensus       125 RHVSfVDCPGHDiL-------MaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM----~LkhiiilQNKiDli~  193 (466)
T KOG0466|consen  125 RHVSFVDCPGHDIL-------MATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM----KLKHIIILQNKIDLIK  193 (466)
T ss_pred             EEEEeccCCchHHH-------HHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh----hhceEEEEechhhhhh
Confidence            35789999998421       111222222347777787766532211111111122221    1367899999999987


Q ss_pred             cH---hHHHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhhccCC
Q 021615          237 AR---DRLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       237 ~~---~~~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      +.   ++.+.+..++..     ..+.++||.-+.+++.+.+++....-.
T Consensus       194 e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv  242 (466)
T KOG0466|consen  194 ESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV  242 (466)
T ss_pred             HHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence            53   345555555552     246668999999999999998876644

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.45  E-value=0.00097  Score=60.30  Aligned_cols=99  Identities=12%  Similarity=0.070  Sum_probs=56.1

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHh--hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l--~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .+.++||||.....   ...-..+...+  ...+-+++|+|++..  .++.   .+.++.|..   -.+--++++|.|-.
T Consensus       156 D~ViIDt~Gr~~~~---~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~---~~~~~~f~~---~~~~~~I~TKlDet  224 (270)
T PRK06731        156 DYILIDTAGKNYRA---SETVEEMIETMGQVEPDYICLTLSASMK--SKDM---IEIITNFKD---IHIDGIVFTKFDET  224 (270)
T ss_pred             CEEEEECCCCCcCC---HHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHH---HHHHHHhCC---CCCCEEEEEeecCC
Confidence            78999999986432   12222222222  234678999998742  2222   233444432   13345778999987


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVKS  270 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~  270 (310)
                      ..-   -.+.......+.+..-..+|+++.+-+..
T Consensus       225 ~~~---G~~l~~~~~~~~Pi~~it~Gq~vp~di~~  256 (270)
T PRK06731        225 ASS---GELLKIPAVSSAPIVLMTDGQDVKKNIHI  256 (270)
T ss_pred             CCc---cHHHHHHHHHCcCEEEEeCCCCCCcchhh
Confidence            542   23334444556666666677777766654

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.43  E-value=0.0012  Score=62.28  Aligned_cols=155  Identities=14%  Similarity=0.139  Sum_probs=74.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCC--CC-CCCCCceeecc-ceEee------------CCCCCCCccC--------CC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKP--DI-ADYPFTTLMPN-LGRLD------------GDPTLGAEKY--------SS  157 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~--~i-~~~~~tT~~~~-~~~v~------------~~~~~~~~~~--------~~  157 (310)
                      ...|++||++||||||-+--|...-.  .. ....+.|.+.. +|.++            .........+        ..
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            45689999999999999887753321  00 11122232211 11100            0000000000        13


Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPE  236 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~  236 (310)
                      .++++||.|.-........--..+.... ...-..+|++++.  ..++++.   .+..|..    .| --++++|+|-..
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~-~~i~~~Lvlsat~--K~~dlke---i~~~f~~----~~i~~~I~TKlDET~  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVS-HSIEVYLVLSATT--KYEDLKE---IIKQFSL----FPIDGLIFTKLDETT  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhcc-ccceEEEEEecCc--chHHHHH---HHHHhcc----CCcceeEEEcccccC
Confidence            6899999997543221111111222222 2233455666653  2344443   3444432    22 256789999775


Q ss_pred             cHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615          237 ARDRLQSLTEEILKIGCDKVTSETELSSEDAVK  269 (310)
Q Consensus       237 ~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~  269 (310)
                      .   +-.+...+...+.+..--..|+.+.+-+.
T Consensus       353 s---~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~  382 (407)
T COG1419         353 S---LGNLFSLMYETRLPVSYVTNGQRVPEDIV  382 (407)
T ss_pred             c---hhHHHHHHHHhCCCeEEEeCCCCCCchhh
Confidence            4   33344444555555555556676666554

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.42  E-value=0.00069  Score=65.97  Aligned_cols=95  Identities=13%  Similarity=0.151  Sum_probs=51.9

Q ss_pred             ceEEEeCCCCCccccCCchHHHH--HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~--~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .+.++||+|......   .+...  ++.......-.++|+|+....  .   .+.+.+..|..   ....-+|+||+|-.
T Consensus       336 d~VLIDTaGr~~~d~---~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~---~l~~i~~~f~~---~~~~g~IlTKlDet  404 (484)
T PRK06995        336 HIVLIDTIGMSQRDR---MVSEQIAMLHGAGAPVKRLLLLNATSHG--D---TLNEVVQAYRG---PGLAGCILTKLDEA  404 (484)
T ss_pred             CeEEeCCCCcChhhH---HHHHHHHHHhccCCCCeeEEEEeCCCcH--H---HHHHHHHHhcc---CCCCEEEEeCCCCc
Confidence            579999999654321   11111  122111122267888887432  2   23334444432   22445778999976


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSED  266 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~  266 (310)
                      ..   .-.+.......+++..-..+|+++.+
T Consensus       405 ~~---~G~~l~i~~~~~lPI~yvt~GQ~VPe  432 (484)
T PRK06995        405 AS---LGGALDVVIRYKLPLHYVSNGQRVPE  432 (484)
T ss_pred             cc---chHHHHHHHHHCCCeEEEecCCCChh
Confidence            54   33444555566677666777888833

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.41  E-value=0.0016  Score=61.85  Aligned_cols=99  Identities=14%  Similarity=0.167  Sum_probs=54.8

Q ss_pred             ceEEEeCCCCCccccCCchHH--HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLG--RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~--~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .++++||||......  ..+.  ..++.......-.++|+|++..  ..++.   +.+..|..   -.+-=++++|.|-.
T Consensus       256 DlVLIDTaGr~~~~~--~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~---~~~~~~~~---~~~~~~I~TKlDet  325 (388)
T PRK12723        256 DLVLVDTIGKSPKDF--MKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVK---EIFHQFSP---FSYKTVIFTKLDET  325 (388)
T ss_pred             CEEEEcCCCCCccCH--HHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHH---HHHHHhcC---CCCCEEEEEeccCC
Confidence            689999999764311  1111  1222222212257899999864  23333   34444421   12446778999986


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVK  269 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~  269 (310)
                      ..-   =.+.......+++..-...|+.+.+-+.
T Consensus       326 ~~~---G~~l~~~~~~~~Pi~yit~Gq~vPeDl~  356 (388)
T PRK12723        326 TCV---GNLISLIYEMRKEVSYVTDGQIVPHNIS  356 (388)
T ss_pred             Ccc---hHHHHHHHHHCCCEEEEeCCCCChhhhh
Confidence            542   3334444555666666667788754443

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.41  E-value=0.00074  Score=65.13  Aligned_cols=95  Identities=13%  Similarity=0.129  Sum_probs=49.1

Q ss_pred             ceEEEeCCCCCccccCCchHHHHH--HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~--~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .++|+||||.....   ..+-..+  +..+..+|.+++|+|++..  .+.+.    ....+....  ...-+|+||+|-.
T Consensus       177 DvVIIDTAGr~~~d---~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~----~a~~F~~~l--~i~gvIlTKlD~~  245 (437)
T PRK00771        177 DVIIVDTAGRHALE---EDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKN----QAKAFHEAV--GIGGIIITKLDGT  245 (437)
T ss_pred             CEEEEECCCcccch---HHHHHHHHHHHHHhcccceeEEEecccc--HHHHH----HHHHHHhcC--CCCEEEEecccCC
Confidence            68999999975431   2222111  1223467899999998764  22222    223332111  1346788999976


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSED  266 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~  266 (310)
                      ..--   .........+.+..-..+|+.+++
T Consensus       246 a~~G---~~ls~~~~~~~Pi~fig~Ge~v~D  273 (437)
T PRK00771        246 AKGG---GALSAVAETGAPIKFIGTGEKIDD  273 (437)
T ss_pred             Cccc---HHHHHHHHHCcCEEEEecCCCccc
Confidence            4321   222222334444444444555533

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.31  E-value=0.00099  Score=62.06  Aligned_cols=125  Identities=24%  Similarity=0.185  Sum_probs=72.1

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC---C-----------CCceeeccceEeeCCCCCCC---------cc--
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD---Y-----------PFTTLMPNLGRLDGDPTLGA---------EK--  154 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~---~-----------~~tT~~~~~~~v~~~~~~~~---------~~--  154 (310)
                      +.-..|+..|.-++|||||+-.|+-.++.-++   .           .+-|.+.....+.++....-         ..  
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~  194 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA  194 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence            34456899999999999999988754432211   0           11111222222222111000         00  


Q ss_pred             ----CCCceEEEeCCCCCccccCCchHHHHHHHHh--hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEE
Q 021615          155 ----YSSEATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVV  228 (310)
Q Consensus       155 ----~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l--~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv  228 (310)
                          -++-+.++||-|++..       -+..++-+  .+.|-.++|+-+.+..+.-.-+.+--.+.      .+.|+++|
T Consensus       195 vv~~aDklVsfVDtvGHEpw-------LrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a------~~lPviVv  261 (527)
T COG5258         195 VVKRADKLVSFVDTVGHEPW-------LRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA------MELPVIVV  261 (527)
T ss_pred             hhhhcccEEEEEecCCccHH-------HHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh------hcCCEEEE
Confidence                0134789999999643       11222222  46799999999888655433333322222      47899999


Q ss_pred             EeCCCCCCc
Q 021615          229 LNKIDLPEA  237 (310)
Q Consensus       229 ~NK~Dl~~~  237 (310)
                      ++|+|+.+.
T Consensus       262 vTK~D~~~d  270 (527)
T COG5258         262 VTKIDMVPD  270 (527)
T ss_pred             EEecccCcH
Confidence            999999875

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.00069  Score=71.90  Aligned_cols=130  Identities=22%  Similarity=0.209  Sum_probs=67.9

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc----C
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH----L  173 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~----~  173 (310)
                      -.++=-.|||+||+||||++...--.-+-.  ........   .++-+.+.     .+.+.-+++||.|-.-...    .
T Consensus       123 yeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~---~gT~~cdw-----wf~deaVlIDtaGry~~q~s~~~~  194 (1188)
T COG3523         123 YELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAG---PGTRNCDW-----WFTDEAVLIDTAGRYITQDSADEV  194 (1188)
T ss_pred             hcCCceEEecCCCCCcchHHhcccccCcchhhhccccccC---CCCcccCc-----ccccceEEEcCCcceecccCcchh
Confidence            344446899999999999987543322211  11111111   11111121     1234789999999543221    1


Q ss_pred             CchHHHHHHHHh------hhcCEEEEecccCC---CCcHHH---HHHHHHHHHhcCCCC-CCCCEEEEEeCCCCCCc
Q 021615          174 GKGLGRNFLRHL------RRTRLLVHVIDAAA---ENPVND---YRTVKEELRMYNPDY-LERPFIVVLNKIDLPEA  237 (310)
Q Consensus       174 ~~~l~~~~~~~l------~~~d~il~VvD~s~---~~~~~~---~~~~~~~l~~~~~~~-~~~p~ivv~NK~Dl~~~  237 (310)
                      +...-..|+..+      +-.++|++-+|+++   .+..+.   ...++.-|.+....+ ...|+.+++||+|+...
T Consensus       195 ~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         195 DRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             hHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence            122222333332      33589999998876   222222   222333232222111 46899999999999863

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.27  E-value=0.0008  Score=53.16  Aligned_cols=21  Identities=38%  Similarity=0.547  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 021615          105 VGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~  125 (310)
                      |.+.|+||+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            678999999999999999975

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.21  E-value=0.0004  Score=59.35  Aligned_cols=42  Identities=29%  Similarity=0.449  Sum_probs=34.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeC
Q 021615          105 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDG  146 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~  146 (310)
                      |+|+|++|||||||+++|....+.. ...+.||..|..+..++
T Consensus         7 ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G   49 (186)
T PRK14737          7 FIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEG   49 (186)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCC
Confidence            7899999999999999999876554 44678898887776654

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.21  E-value=0.00047  Score=58.13  Aligned_cols=40  Identities=30%  Similarity=0.415  Sum_probs=29.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceE
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGR  143 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~  143 (310)
                      -|+|+|++|||||||++.|.+..+.. .....+|..|..+.
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~   43 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE   43 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC
Confidence            48999999999999999999875443 33345566555444

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=97.17  E-value=0.0046  Score=54.27  Aligned_cols=100  Identities=10%  Similarity=0.102  Sum_probs=61.0

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHH---HHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVN---DYRTVKEELRMYNPDYLERPFIVVLNKIDL  234 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~---~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl  234 (310)
                      .+.|+||+|.....         ....+..+|++|.=.-.+..+..+   .++.+.+..+..   ....|.-|++|++.-
T Consensus        85 d~VlvDleG~as~~---------~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~---~~~ip~~Vl~Tr~~~  152 (231)
T PF07015_consen   85 DFVLVDLEGGASEL---------NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAE---RRDIPAAVLFTRVPA  152 (231)
T ss_pred             CEEEEeCCCCCchh---------HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhh---CCCCCeeEEEecCCc
Confidence            58999999974321         122356899998866655433333   333333333222   246899999999985


Q ss_pred             CCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615          235 PEARDRLQSLTEEILKIGCDKVTSETELSSEDAVK  269 (310)
Q Consensus       235 ~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~  269 (310)
                      .........+.+.+.++.+..++......+.+++.
T Consensus       153 ~~~~~~~~~~~e~~~~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  153 ARLTRAQRIISEQLESLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             chhhHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence            43323333445556667777777777777777765

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.14  E-value=0.0051  Score=45.38  Aligned_cols=73  Identities=25%  Similarity=0.219  Sum_probs=46.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHH
Q 021615          105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH  184 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~  184 (310)
                      +++.|.+|+||||+...+...-.. .       ......++            .+.++|+|+.......   +   ....
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-~-------g~~v~~~~------------d~iivD~~~~~~~~~~---~---~~~~   55 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-R-------GKRVLLID------------DYVLIDTPPGLGLLVL---L---CLLA   55 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-C-------CCeEEEEC------------CEEEEeCCCCccchhh---h---hhhh
Confidence            678899999999999988754211 0       00111111            4799999998654210   0   1234


Q ss_pred             hhhcCEEEEecccCCCCcH
Q 021615          185 LRRTRLLVHVIDAAAENPV  203 (310)
Q Consensus       185 l~~~d~il~VvD~s~~~~~  203 (310)
                      +..+|.++++++.......
T Consensus        56 ~~~~~~vi~v~~~~~~~~~   74 (99)
T cd01983          56 LLAADLVIIVTTPEALAVL   74 (99)
T ss_pred             hhhCCEEEEecCCchhhHH
Confidence            5578999999998764433

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.13  E-value=0.0052  Score=46.82  Aligned_cols=71  Identities=17%  Similarity=0.191  Sum_probs=44.7

Q ss_pred             EEEEc-CCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          105 VGLVG-LPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       105 V~lvG-~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      |+++| ..|+||||+...|...-...        ......++.++.     |  .+.++|+|+....         ....
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~--------~~~vl~~d~d~~-----~--d~viiD~p~~~~~---------~~~~   57 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARR--------GKRVLLIDLDPQ-----Y--DYIIIDTPPSLGL---------LTRN   57 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhC--------CCcEEEEeCCCC-----C--CEEEEeCcCCCCH---------HHHH
Confidence            56777 58999999987776432110        111222333322     2  6899999997533         2235


Q ss_pred             HhhhcCEEEEecccCC
Q 021615          184 HLRRTRLLVHVIDAAA  199 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~  199 (310)
                      .+..||.++++++.+.
T Consensus        58 ~l~~ad~viv~~~~~~   73 (104)
T cd02042          58 ALAAADLVLIPVQPSP   73 (104)
T ss_pred             HHHHCCEEEEeccCCH
Confidence            5668999999998864

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.08  E-value=0.0029  Score=60.97  Aligned_cols=95  Identities=16%  Similarity=0.095  Sum_probs=45.8

Q ss_pred             ceEEEeCCCCCccccCCchHHHHH--HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~--~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .++|+||||.....   ..+-...  +..+-..+-+++|+|+...  .+... ..+.+...    . ...-+|+||.|-.
T Consensus       185 DvVIIDTaGrl~~d---~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~-~a~~F~~~----~-~i~giIlTKlD~~  253 (433)
T PRK10867        185 DVVIVDTAGRLHID---EELMDELKAIKAAVNPDEILLVVDAMTG--QDAVN-TAKAFNEA----L-GLTGVILTKLDGD  253 (433)
T ss_pred             CEEEEeCCCCcccC---HHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHH-HHHHHHhh----C-CCCEEEEeCccCc
Confidence            68999999975421   1112111  1122356778999998642  22222 22222211    1 1245678999965


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSED  266 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~  266 (310)
                      ...-....   .....+++..-..+|+.+++
T Consensus       254 ~rgG~als---i~~~~~~PI~fig~Ge~v~D  281 (433)
T PRK10867        254 ARGGAALS---IRAVTGKPIKFIGTGEKLDD  281 (433)
T ss_pred             ccccHHHH---HHHHHCcCEEEEeCCCcccc
Confidence            43222222   22333444433344554443

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.06  E-value=0.019  Score=47.89  Aligned_cols=65  Identities=20%  Similarity=0.201  Sum_probs=42.9

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                      .++|+|||+....         .....+..||.+++|++.+... ......+.+.+...    ......+|+|++|...
T Consensus        64 d~viiD~p~~~~~---------~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~~~~~----~~~~~~iv~N~~~~~~  128 (179)
T cd02036          64 DYILIDSPAGIER---------GFITAIAPADEALLVTTPEISS-LRDADRVKGLLEAL----GIKVVGVIVNRVRPDM  128 (179)
T ss_pred             CEEEEECCCCCcH---------HHHHHHHhCCcEEEEeCCCcch-HHHHHHHHHHHHHc----CCceEEEEEeCCcccc
Confidence            6899999986432         2234456899999999887543 34444455555542    1234678999998764

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.05  E-value=0.00086  Score=54.33  Aligned_cols=40  Identities=30%  Similarity=0.296  Sum_probs=28.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCC--CCCCCCceeeccceEe
Q 021615          105 VGLVGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRL  144 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~~~--i~~~~~tT~~~~~~~v  144 (310)
                      |+|+|++|+|||||++.|....+.  ....+.||..|..+..
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~   43 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEV   43 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCcc
Confidence            689999999999999999986432  1334456666655443

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.03  E-value=0.00039  Score=58.72  Aligned_cols=43  Identities=33%  Similarity=0.397  Sum_probs=34.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGD  147 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~  147 (310)
                      -++|.|++|||||||+++|.... .. -....||+.|..|.+++.
T Consensus         6 l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~   49 (191)
T COG0194           6 LIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGV   49 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCc
Confidence            37899999999999999999887 44 445678888888887653

>PRK01889 GTPase RsgA; Reviewed

Probab=97.00  E-value=0.0037  Score=58.91  Aligned_cols=82  Identities=12%  Similarity=0.017  Sum_probs=52.9

Q ss_pred             hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcCCCccccCccCCH
Q 021615          186 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIGCDKVTSETELSS  264 (310)
Q Consensus       186 ~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g~~~~sa~~~~gi  264 (310)
                      .++|.+++|+++........++.++..+..     .+.+.++|+||+|+.+..+ ..+.+...-....+..+|++++.|+
T Consensus       111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~-----~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl  185 (356)
T PRK01889        111 ANVDTVFIVCSLNHDFNLRRIERYLALAWE-----SGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGL  185 (356)
T ss_pred             EeCCEEEEEEecCCCCChhHHHHHHHHHHH-----cCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccH
Confidence            578999999999643333344444444443     3677789999999986522 2222222201123344899999999


Q ss_pred             HHHHHHHh
Q 021615          265 EDAVKSLS  272 (310)
Q Consensus       265 ~~l~~~l~  272 (310)
                      +++...+.
T Consensus       186 ~~L~~~L~  193 (356)
T PRK01889        186 DVLAAWLS  193 (356)
T ss_pred             HHHHHHhh
Confidence            99998875

>TIGR00959 ffh signal recognition particle protein

Probab=96.99  E-value=0.0049  Score=59.35  Aligned_cols=95  Identities=16%  Similarity=0.127  Sum_probs=47.2

Q ss_pred             ceEEEeCCCCCccccCCchHHHHH--HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~--~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .++|+||||.....   ..+-...  +...-..+.+++|+|+...  .+... ....+...    . ...-+|+||+|-.
T Consensus       184 DvVIIDTaGr~~~d---~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~-~a~~f~~~----v-~i~giIlTKlD~~  252 (428)
T TIGR00959       184 DVVIVDTAGRLQID---EELMEELAAIKEILNPDEILLVVDAMTG--QDAVN-TAKTFNER----L-GLTGVVLTKLDGD  252 (428)
T ss_pred             CEEEEeCCCccccC---HHHHHHHHHHHHhhCCceEEEEEeccch--HHHHH-HHHHHHhh----C-CCCEEEEeCccCc
Confidence            68999999975421   1111111  1223357889999998743  22222 22222211    1 2346779999965


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSED  266 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~  266 (310)
                      ...-....+   ....+++..-..+|+.+++
T Consensus       253 ~~~G~~lsi---~~~~~~PI~fi~~Ge~i~d  280 (428)
T TIGR00959       253 ARGGAALSV---RSVTGKPIKFIGVGEKIDD  280 (428)
T ss_pred             ccccHHHHH---HHHHCcCEEEEeCCCChhh
Confidence            432222222   2333444433344444443

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]

Probab=96.94  E-value=0.0069  Score=56.03  Aligned_cols=32  Identities=25%  Similarity=0.157  Sum_probs=26.3

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI  129 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i  129 (310)
                      +-..+++|.+||+.++|||||...|++...+.
T Consensus        99 ~~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~  130 (415)
T KOG2749|consen   99 ESSYGPRVMVVGPTDVGKSTLCRILLNYAVKQ  130 (415)
T ss_pred             hhccCCEEEEECCCccchHHHHHHHHHHHHHc
Confidence            33568999999999999999999998764433

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.92  E-value=0.00049  Score=55.18  Aligned_cols=30  Identities=37%  Similarity=0.402  Sum_probs=25.4

Q ss_pred             hhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           97 LILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.++..-.++|+|++|+|||||++.|++..
T Consensus         6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen    6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEEccCCCccccceeeecccc
Confidence            345555679999999999999999999875

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.91  E-value=0.00082  Score=58.91  Aligned_cols=32  Identities=31%  Similarity=0.380  Sum_probs=25.9

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.++..--|+|+|++|||||||+|.+.+-.
T Consensus        24 v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          24 VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            33445555569999999999999999999875

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.90  E-value=0.00088  Score=59.15  Aligned_cols=29  Identities=31%  Similarity=0.334  Sum_probs=23.8

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .....==|+++|++|+|||||+|.+.|-.
T Consensus        25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          25 SVEKGEFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33344459999999999999999999875

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=96.89  E-value=0.0015  Score=63.23  Aligned_cols=153  Identities=17%  Similarity=0.232  Sum_probs=93.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .|++|||...+|||+|+.+.+........-|..........+.+.      .  ..+.+.|-.|..+.         +| 
T Consensus        31 lk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gq------s--~lLlirdeg~~~~a---------Qf-   92 (749)
T KOG0705|consen   31 LKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQ------S--HLLLIRDEGGHPDA---------QF-   92 (749)
T ss_pred             hheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeecc------c--eEeeeecccCCchh---------hh-
Confidence            469999999999999999876443222111111111111111111      1  14566666663221         23 


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc-------HhHHHHHHHHHHhcCCCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-------RDRLQSLTEEILKIGCDK  255 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~-------~~~~~~l~~~l~~~g~~~  255 (310)
                        ....|++|||+...+...++....+..++..|.. ..+.|+++++.+. ....       +.....+......+...+
T Consensus        93 --t~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~-r~~i~l~lvgtqd-~iS~~~~rv~~da~~r~l~~~~krcsy~e  168 (749)
T KOG0705|consen   93 --CQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRN-ISDLPLILVGTQD-HISAKRPRVITDDRARQLSAQMKRCSYYE  168 (749)
T ss_pred             --hhhccceEEEEEeccccCHHHHHHHHhhcccccc-cccchHHhhcCcc-hhhcccccccchHHHHHHHHhcCccceee
Confidence              3467999999999998999988888777765543 3457777777653 3221       122334444444556677


Q ss_pred             cccCccCCHHHHHHHHhhccCC
Q 021615          256 VTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      ..+.+|.+++..|+.++.....
T Consensus       169 t~atyGlnv~rvf~~~~~k~i~  190 (749)
T KOG0705|consen  169 TCATYGLNVERVFQEVAQKIVQ  190 (749)
T ss_pred             cchhhhhhHHHHHHHHHHHHHH
Confidence            8999999999999987765543

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.83  E-value=0.0013  Score=57.17  Aligned_cols=41  Identities=24%  Similarity=0.197  Sum_probs=29.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEe
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRL  144 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v  144 (310)
                      -|+|+|++|||||||++.|....... -..+.||..+..+..
T Consensus        15 ~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~   56 (206)
T PRK14738         15 LVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEI   56 (206)
T ss_pred             EEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCC
Confidence            37899999999999999998654433 445566765554443

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.82  E-value=0.012  Score=53.75  Aligned_cols=110  Identities=19%  Similarity=0.263  Sum_probs=63.6

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc----------
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG----------  170 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~----------  170 (310)
                      +.+.++|||++|-|||++++++....+...+.. ...                   .++..+.+|.--+.          
T Consensus        60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~~~-------------------~PVv~vq~P~~p~~~~~Y~~IL~~  119 (302)
T PF05621_consen   60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-AER-------------------IPVVYVQMPPEPDERRFYSAILEA  119 (302)
T ss_pred             CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-Ccc-------------------ccEEEEecCCCCChHHHHHHHHHH
Confidence            457799999999999999999998875432210 000                   14555666543210          


Q ss_pred             ------ccC-CchHHHHHHHHhhhcCEEEEecccCC---CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 021615          171 ------AHL-GKGLGRNFLRHLRRTRLLVHVIDAAA---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNK  231 (310)
Q Consensus       171 ------~~~-~~~l~~~~~~~l~~~d~il~VvD~s~---~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK  231 (310)
                            ... ...+.......++.+.+=++|+|=-+   ..+...-+.+.+.|+... +....|+++|+++
T Consensus       120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~-NeL~ipiV~vGt~  189 (302)
T PF05621_consen  120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG-NELQIPIVGVGTR  189 (302)
T ss_pred             hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh-hccCCCeEEeccH
Confidence                  000 01223334556778888899998432   112222334445555443 2347999998764

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.82  E-value=0.0012  Score=57.16  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=27.4

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.....-.|+++|++|+|||||+++|-+-+
T Consensus        20 gi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          20 GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             CcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence            345556666679999999999999999998876

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=96.77  E-value=0.0011  Score=58.23  Aligned_cols=34  Identities=32%  Similarity=0.398  Sum_probs=29.4

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+++...-+|++||.+|||||||++.|.|.-
T Consensus        44 ~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~   77 (249)
T COG1134          44 KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY   77 (249)
T ss_pred             cCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence            4456677788899999999999999999999875

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=96.71  E-value=0.014  Score=55.47  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 021615          104 DVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~  124 (310)
                      =||+||+--+|||||+.++..
T Consensus        19 YiGVVGPVRTGKSTFIKRFMe   39 (492)
T PF09547_consen   19 YIGVVGPVRTGKSTFIKRFME   39 (492)
T ss_pred             EEEeecCcccCchhHHHHHHH
Confidence            489999999999999999975

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG2484 consensus GTPase [General function prediction only]

Probab=96.71  E-value=0.0046  Score=57.90  Aligned_cols=72  Identities=21%  Similarity=0.285  Sum_probs=50.0

Q ss_pred             hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC
Q 021615          176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG  252 (310)
Q Consensus       176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g  252 (310)
                      .+...|.+.++.+|+||.|+|+.++......+ +.+.+....   .++..|+|+||+|+... +..+.+...|...+
T Consensus       135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~-vE~~V~~~~---gnKkLILVLNK~DLVPr-Ev~e~Wl~YLr~~~  206 (435)
T KOG2484|consen  135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPE-VEEAVLQAH---GNKKLILVLNKIDLVPR-EVVEKWLVYLRREG  206 (435)
T ss_pred             HHHHHHHHHHhhhheEEEeeeccCCCCCCChh-HHHHHHhcc---CCceEEEEeehhccCCH-HHHHHHHHHHHhhC
Confidence            34556777788999999999999876544322 212222111   34889999999999976 55777888887553

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.70  E-value=0.0016  Score=56.18  Aligned_cols=32  Identities=31%  Similarity=0.290  Sum_probs=26.4

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34455556679999999999999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.68  E-value=0.0017  Score=57.38  Aligned_cols=32  Identities=31%  Similarity=0.382  Sum_probs=26.5

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          19 VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34455566679999999999999999999875

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.68  E-value=0.0017  Score=56.49  Aligned_cols=32  Identities=38%  Similarity=0.349  Sum_probs=26.5

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        22 LNFHITKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34455566679999999999999999999874

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.66  E-value=0.0017  Score=56.47  Aligned_cols=32  Identities=31%  Similarity=0.368  Sum_probs=26.3

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        23 ~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            33455556679999999999999999999874

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.66  E-value=0.0019  Score=44.85  Aligned_cols=20  Identities=45%  Similarity=0.484  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~  123 (310)
                      ..+|.|++|+|||||+.++.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48899999999999999886

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.65  E-value=0.0024  Score=55.01  Aligned_cols=42  Identities=33%  Similarity=0.434  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEe
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRL  144 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v  144 (310)
                      .-|+|+|++|+|||||++.|.+..+.. .....+|..|..+.+
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~   48 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEV   48 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCc
Confidence            358999999999999999999875422 333456666655543

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.65  E-value=0.0015  Score=55.25  Aligned_cols=25  Identities=40%  Similarity=0.428  Sum_probs=22.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .-.|+|+|++|+|||||+|.+.|-.
T Consensus        25 ge~vAi~GpSGaGKSTLLnLIAGF~   49 (231)
T COG3840          25 GEIVAILGPSGAGKSTLLNLIAGFE   49 (231)
T ss_pred             CcEEEEECCCCccHHHHHHHHHhcc
Confidence            3459999999999999999999865

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.64  E-value=0.0016  Score=56.50  Aligned_cols=30  Identities=33%  Similarity=0.414  Sum_probs=25.1

Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+... .++|+|++|+|||||++.|.|..
T Consensus        20 s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          20 SLTLGPG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             eEEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            3445556 79999999999999999999864

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.63  E-value=0.011  Score=46.74  Aligned_cols=24  Identities=38%  Similarity=0.516  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .-+.++|++|+|||+|++.+...-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            458999999999999999999763

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.62  E-value=0.002  Score=55.98  Aligned_cols=32  Identities=31%  Similarity=0.388  Sum_probs=26.4

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          19 LSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34455566679999999999999999999874

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.61  E-value=0.0019  Score=55.64  Aligned_cols=31  Identities=29%  Similarity=0.351  Sum_probs=25.9

Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+...-.++|+|++|+|||||++.|.|..
T Consensus        18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3455556679999999999999999999874

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.61  E-value=0.0016  Score=60.46  Aligned_cols=33  Identities=33%  Similarity=0.323  Sum_probs=27.0

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.++..-=++++|++|||||||++.+.|-.
T Consensus        21 ~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          21 DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344555555569999999999999999999876

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.59  E-value=0.0019  Score=56.42  Aligned_cols=32  Identities=34%  Similarity=0.356  Sum_probs=26.5

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          19 VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            34455566679999999999999999999875

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.59  E-value=0.0018  Score=56.03  Aligned_cols=30  Identities=33%  Similarity=0.321  Sum_probs=25.0

Q ss_pred             hhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           97 LILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+...-.++|+|++|+|||||++.|.|..
T Consensus        22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            344455569999999999999999999875

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=96.59  E-value=0.0043  Score=59.82  Aligned_cols=74  Identities=19%  Similarity=0.263  Sum_probs=51.3

Q ss_pred             CchHHHHHHHHhhhcCEEEEecccCCCCcHH--HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc
Q 021615          174 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVN--DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI  251 (310)
Q Consensus       174 ~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~--~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~  251 (310)
                      +-.+-++.++.++++|+||.+||+.++..+.  +++....+..      ..+..++++||+|+... ++...+.+.+..-
T Consensus       161 NLE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d------~~K~~~LLvNKaDLl~~-~qr~aWa~YF~~~  233 (562)
T KOG1424|consen  161 NLEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD------PSKANVLLVNKADLLPP-EQRVAWAEYFRQN  233 (562)
T ss_pred             CHHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccc------cccceEEEEehhhcCCH-HHHHHHHHHHHhc
Confidence            3466788899999999999999999865433  2222222222      24778899999999986 4456777777654


Q ss_pred             CCC
Q 021615          252 GCD  254 (310)
Q Consensus       252 g~~  254 (310)
                      .+.
T Consensus       234 ni~  236 (562)
T KOG1424|consen  234 NIP  236 (562)
T ss_pred             Cce
Confidence            433

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.58  E-value=0.0022  Score=55.52  Aligned_cols=32  Identities=25%  Similarity=0.290  Sum_probs=26.3

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34455556679999999999999999999874

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.57  E-value=0.0024  Score=53.25  Aligned_cols=32  Identities=31%  Similarity=0.337  Sum_probs=26.9

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.++..-.++|+|++|+|||||++.|.|..
T Consensus        19 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          19 VSLSVRRGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34456666679999999999999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.57  E-value=0.002  Score=55.89  Aligned_cols=32  Identities=34%  Similarity=0.349  Sum_probs=26.5

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            34455566679999999999999999999874

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.57  E-value=0.0023  Score=52.23  Aligned_cols=32  Identities=41%  Similarity=0.513  Sum_probs=26.2

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++++|++|+|||||++.|.+..
T Consensus        19 ~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          19 ISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            33455555679999999999999999999875

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.56  E-value=0.0024  Score=53.94  Aligned_cols=32  Identities=34%  Similarity=0.427  Sum_probs=26.6

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        19 i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          19 VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34455566679999999999999999999874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.56  E-value=0.0022  Score=54.63  Aligned_cols=29  Identities=31%  Similarity=0.285  Sum_probs=24.3

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+...-.++|+|++|+|||||++.|.|..
T Consensus        14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        14 AAERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44445569999999999999999999874

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=96.56  E-value=0.015  Score=54.26  Aligned_cols=23  Identities=57%  Similarity=0.761  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ++|++||.-.+|||||+-.|+..
T Consensus       134 ~RVAVVGNVDAGKSTLLGVLTHg  156 (641)
T KOG0463|consen  134 ARVAVVGNVDAGKSTLLGVLTHG  156 (641)
T ss_pred             EEEEEEecccCCcceeEeeeeec
Confidence            57999999999999999888754

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.56  E-value=0.0023  Score=55.46  Aligned_cols=31  Identities=39%  Similarity=0.374  Sum_probs=25.7

Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+...-.++|+|++|+|||||++.|.|..
T Consensus        21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3445555679999999999999999999874

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.55  E-value=0.0024  Score=54.95  Aligned_cols=33  Identities=30%  Similarity=0.290  Sum_probs=27.2

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344455666679999999999999999999875

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.55  E-value=0.0022  Score=56.15  Aligned_cols=32  Identities=34%  Similarity=0.431  Sum_probs=26.5

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          24 VSFSIKKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34455566679999999999999999999875

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.55  E-value=0.0019  Score=50.53  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+|.|+|||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999999875

...

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.54  E-value=0.0026  Score=54.26  Aligned_cols=31  Identities=26%  Similarity=0.276  Sum_probs=25.7

Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ...++....++++|++|+|||||+++|++.-
T Consensus        19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          19 WLAVEARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             HHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3455566679999999999999999999764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.53  E-value=0.0022  Score=55.91  Aligned_cols=31  Identities=32%  Similarity=0.312  Sum_probs=25.7

Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.++..-.++|+|++|+|||||++.|.|..
T Consensus        22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3445555569999999999999999999975

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.53  E-value=0.0024  Score=55.75  Aligned_cols=31  Identities=32%  Similarity=0.346  Sum_probs=25.9

Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+...-.++|+|++|+|||||++.|.|..
T Consensus        25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3445556679999999999999999999875

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.52  E-value=0.0024  Score=55.76  Aligned_cols=32  Identities=38%  Similarity=0.406  Sum_probs=26.3

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            33455556679999999999999999999874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.52  E-value=0.0016  Score=55.14  Aligned_cols=29  Identities=24%  Similarity=0.283  Sum_probs=24.0

Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHc
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      .+.+...-.++|+|++|+|||||++.+..
T Consensus        15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            34555666799999999999999999874

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.51  E-value=0.0027  Score=53.80  Aligned_cols=28  Identities=21%  Similarity=0.354  Sum_probs=23.8

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ++..-.++|+|++|+|||||++.|.+..
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          22 VKEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            3444569999999999999999999874

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.51  E-value=0.0025  Score=56.07  Aligned_cols=31  Identities=32%  Similarity=0.341  Sum_probs=25.7

Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+...-.++|+|++|+|||||++.|.|..
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             eeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3445555679999999999999999999874

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.50  E-value=0.0049  Score=51.97  Aligned_cols=58  Identities=21%  Similarity=0.267  Sum_probs=35.8

Q ss_pred             CEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc
Q 021615          189 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI  251 (310)
Q Consensus       189 d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~  251 (310)
                      |++++|+|+..+....+ ..+.+.+.. .  ..++|+++|+||+|+.+. +....+.+.+...
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~l-~--~~~kp~IlVlNK~DL~~~-~~l~~~~~~~~~~   58 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVLQ-A--GGNKKLVLVLNKIDLVPK-ENVEKWLKYLRRE   58 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHHh-c--cCCCCEEEEEehhhcCCH-HHHHHHHHHHHhh
Confidence            78999999987533322 223333211 0  136899999999999865 3355555555443

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=96.50  E-value=0.0024  Score=53.21  Aligned_cols=22  Identities=41%  Similarity=0.691  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+++|++|+|||||+++|...
T Consensus         3 vi~i~G~~gsGKTTli~~L~~~   24 (159)
T cd03116           3 VIGFVGYSGSGKTTLLEKLIPA   24 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999964

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.50  E-value=0.0025  Score=55.24  Aligned_cols=30  Identities=33%  Similarity=0.414  Sum_probs=25.2

Q ss_pred             hhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           97 LILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+...-.++|+|++|+|||||++.|+|..
T Consensus        21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344555679999999999999999999875

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.50  E-value=0.0026  Score=55.15  Aligned_cols=32  Identities=31%  Similarity=0.278  Sum_probs=26.2

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        19 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          19 LNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            33445556679999999999999999999874

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.48  E-value=0.0026  Score=56.32  Aligned_cols=32  Identities=34%  Similarity=0.421  Sum_probs=26.4

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        21 INLNINPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34455556679999999999999999999875

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.48  E-value=0.0028  Score=55.89  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=26.1

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            33445555679999999999999999999874

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.48  E-value=0.0027  Score=53.73  Aligned_cols=32  Identities=38%  Similarity=0.468  Sum_probs=26.5

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.+..
T Consensus        18 ~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          18 LSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34455566679999999999999999999874

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.48  E-value=0.0026  Score=57.06  Aligned_cols=32  Identities=28%  Similarity=0.318  Sum_probs=26.8

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         20 INLTLESGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34455566679999999999999999999875

>PRK10908 cell division protein FtsE; Provisional

Probab=96.48  E-value=0.0029  Score=55.30  Aligned_cols=32  Identities=34%  Similarity=0.325  Sum_probs=26.8

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.+..
T Consensus        21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34455666679999999999999999999875

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.48  E-value=0.002  Score=55.72  Aligned_cols=29  Identities=38%  Similarity=0.407  Sum_probs=24.0

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .++..--++|+|+.|+|||||+..|+|.-
T Consensus        23 ~~~pGev~ailGPNGAGKSTlLk~LsGel   51 (259)
T COG4559          23 DLRPGEVLAILGPNGAGKSTLLKALSGEL   51 (259)
T ss_pred             eccCCcEEEEECCCCccHHHHHHHhhCcc
Confidence            34444458999999999999999999874

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=96.47  E-value=0.0028  Score=54.42  Aligned_cols=32  Identities=25%  Similarity=0.325  Sum_probs=26.7

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|+|..
T Consensus        19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44455566679999999999999999999975

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.46  E-value=0.0025  Score=54.60  Aligned_cols=32  Identities=28%  Similarity=0.269  Sum_probs=26.4

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            34455556679999999999999999999975

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.46  E-value=0.0026  Score=55.97  Aligned_cols=31  Identities=32%  Similarity=0.421  Sum_probs=26.0

Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+...-.++|+|++|+|||||++.|.|..
T Consensus        25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3455556679999999999999999999875

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.44  E-value=0.0034  Score=57.12  Aligned_cols=40  Identities=35%  Similarity=0.415  Sum_probs=32.2

Q ss_pred             CCCCceeehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           87 GQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        87 g~~g~~~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +..+....+.+.++..--++++|++|||||||+..+.|-.
T Consensus        13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe   52 (345)
T COG1118          13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE   52 (345)
T ss_pred             ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC
Confidence            3334444566777788889999999999999999999876

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.44  E-value=0.002  Score=55.96  Aligned_cols=32  Identities=34%  Similarity=0.313  Sum_probs=26.3

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33455556679999999999999999999874

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.43  E-value=0.0028  Score=53.76  Aligned_cols=30  Identities=27%  Similarity=0.401  Sum_probs=25.4

Q ss_pred             hhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           97 LILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.++..-.++++|++|+|||||++.|.+..
T Consensus        21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          21 FEVRAGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            344555679999999999999999999975

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.42  E-value=0.0031  Score=55.70  Aligned_cols=32  Identities=34%  Similarity=0.409  Sum_probs=26.2

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|+|..
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        20 VSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            33445555679999999999999999999875

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.42  E-value=0.0021  Score=56.13  Aligned_cols=32  Identities=28%  Similarity=0.351  Sum_probs=26.2

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33455555679999999999999999999874

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.42  E-value=0.0028  Score=55.92  Aligned_cols=31  Identities=32%  Similarity=0.366  Sum_probs=25.7

Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+...-.++|+|++|+|||||++.|.|..
T Consensus        20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             eEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            3445555679999999999999999999874

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.42  E-value=0.0033  Score=52.85  Aligned_cols=32  Identities=31%  Similarity=0.363  Sum_probs=26.5

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.+..
T Consensus        19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34455556679999999999999999999875

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.40  E-value=0.0028  Score=55.76  Aligned_cols=32  Identities=28%  Similarity=0.407  Sum_probs=26.6

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+++..+-.++++|.+|+|||||.+.|.|-.
T Consensus        26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~   57 (252)
T COG1124          26 VSLEIERGETLGIVGESGSGKSTLARLLAGLE   57 (252)
T ss_pred             eeEEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence            33455556679999999999999999999976

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.40  E-value=0.0031  Score=54.45  Aligned_cols=32  Identities=28%  Similarity=0.335  Sum_probs=26.8

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.+..
T Consensus        20 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538         20 LSFTLNAGELVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             ceEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44455666679999999999999999999975

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.39  E-value=0.0032  Score=54.55  Aligned_cols=32  Identities=31%  Similarity=0.343  Sum_probs=26.4

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33455556679999999999999999999975

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.39  E-value=0.0033  Score=55.14  Aligned_cols=31  Identities=35%  Similarity=0.557  Sum_probs=25.8

Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+...-.++|+|++|+|||||++.|.|..
T Consensus        30 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         30 ELVVKRGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            3444555679999999999999999999975

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=96.39  E-value=0.0029  Score=56.48  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=27.5

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.++..-.++|+|++|+|||||++.|+|..
T Consensus        21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             cceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            344556666679999999999999999999975

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.38  E-value=0.0035  Score=55.57  Aligned_cols=32  Identities=28%  Similarity=0.313  Sum_probs=26.4

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|+|||||++.|.|..
T Consensus        21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34455556679999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	310
1lnz_A	342	Structure Of The Obg Gtp-Binding Protein Length = 3		3e-31
1udx_A	416	Crystal Structure Of The Conserved Protein Tt1381 F		8e-30
1jal_A	363	Ychf Protein (Hi0393) Length = 363		2e-10
2dby_A	368	Crystal Structure Of The Gtp-Binding Protein Ychf I		5e-10
2dwq_A	368	Thermus Thermophilus Ychf Gtp-Binding Protein Lengt		6e-10
1wxq_A	397	Crystal Structure Of Gtp Binding Protein From Pyroc		2e-09
4a9a_A	376	Structure Of Rbg1 In Complex With Tma46 Dfrp Domain		3e-09
2e87_A	357	Crystal Structure Of Hypothetical Gtp-Binding Prote		4e-09
2ohf_A	396	Crystal Structure Of Human Ola1 In Complex With Amp		6e-09
1ni3_A	392	Structure Of The Schizosaccharomyces Pombe Ychf Gtp		1e-05

>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein Length = 342

Iteration: 1
 Score =  132 bits (331), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 98/165 (59%), Gaps = 10/165 (6%)
Query: 87  GQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDG 146
           G+ G+E  + L L+V+ADVGLVG P+ GKSTLL+ ++ AKP IADY FTTL+PNLG ++ 
Sbjct: 143 GEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVET 202
Query: 147 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAA---AENPV 203
           D              ADLPGLIEGAH G GLG  F             ID +     +P 
Sbjct: 203 DD-------GRSFVXADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDXSGLEGRDPY 255
Query: 204 NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI 248
           +DY T+ +EL  YN    ERP I+V NK D PEA + L++  E++
Sbjct: 256 DDYLTINQELSEYNLRLTERPQIIVANKXDXPEAAENLEAFKEKL 300

>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From Thermus Thermophilus Hb8 Length = 416

Iteration: 1
 Score =  127 bits (319), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/173 (45%), Positives = 102/173 (58%), Gaps = 17/173 (9%)
Query: 87  GQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDG 146
           G+ GE+  L L L ++ADVGLVG PNAGKS+LLAA+T A P IA YPFTTL PNLG ++ 
Sbjct: 142 GEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV 201
Query: 147 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDY 206
                 E++    TLAD+PG+IEGA  GKGLG  F             +DAA E P+   
Sbjct: 202 SEE---ERF----TLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADE-PLKTL 253
Query: 207 RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSE 259
            T+++E+  Y+P  L RP +V LNK+DL         L EE +K   D +  E
Sbjct: 254 ETLRKEVGAYDPALLRRPSLVALNKVDL---------LEEEAVKALADALARE 297

>pdb|1JAL|A Chain A, Ychf Protein (Hi0393) Length = 363

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 64/138 (46%), Gaps = 19/138 (13%)
Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD-GDPTLG--AEKYSSEATL 161
            G+VGLPN GKSTL  A+T A  + A+YPF T+ PN G +   DP L   AE    E  L
Sbjct: 5   CGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64
Query: 162 ------ADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXID----------AAAENPVND 205
                  D+ GL+ GA  G+GLG  F             +           A   +P++D
Sbjct: 65  PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDD 124
Query: 206 YRTVKEELRMYNPDYLER 223
             T+  EL + + D  ER
Sbjct: 125 IDTINTELALADLDSCER 142

>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In Complexed With Gdp Length = 368

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 19/93 (20%)
Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA-- 162
           VG+VGLPN GKSTL  A+T A    A+YPF T+  N+G +   P      Y+ + T A  
Sbjct: 4   VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV---PLEDERLYALQRTFAKG 60
Query: 163 --------------DLPGLIEGAHLGKGLGRNF 181
                         D+ GL++GAH G+GLG  F
Sbjct: 61  ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQF 93

>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein Length = 368

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 19/93 (20%)
Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA-- 162
           VG+VGLPN GKSTL  A+T A    A+YPF T+  N+G +   P      Y+ + T A  
Sbjct: 4   VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV---PLEDERLYALQRTFAKG 60
Query: 163 --------------DLPGLIEGAHLGKGLGRNF 181
                         D+ GL++GAH G+GLG  F
Sbjct: 61  ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQF 93

>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus Horikoshii Ot3 Length = 397

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 16/94 (17%)
Query: 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-----------RLDGDPTLGA 152
           ++G+VG PN GKST  +A T    +IA+YPFTT+  N+G            L   P    
Sbjct: 2   EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 153 EKYSSEATL-----ADLPGLIEGAHLGKGLGRNF 181
            +Y +   L      D+ GL+ GAH G+GLG  F
Sbjct: 62  YEYRNGLALIPVKXVDVAGLVPGAHEGRGLGNKF 95

>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain Length = 376

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 12/81 (14%)
Query: 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEA 159
           VA VG VG P+ GKSTLL+ +T  + + A+Y FTTL  +P + R  G          ++ 
Sbjct: 72  VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG----------AKI 121
Query: 160 TLADLPGLIEGAHLGKGLGRN 180
            + DLPG+I+GA  G+G G+ 
Sbjct: 122 QMLDLPGIIDGAKDGRGRGKQ 142

>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With Gdp Length = 357

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 23/218 (10%)
Query: 65  RKRMTTLTTNIMRDDTDKVLVLGQHGEEVS-LELILRVVADVGLVGLPNAGKSTLLAAIT 123
           R++      +++RD  D++  L +  E +  L ++   +  V + G PN GKSTLL A+T
Sbjct: 129 RRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALT 188
Query: 124 HAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-LGRNFX 182
            AKP+IA YPFTT   N+G+ +     G  +Y     + D PGL++     +  + +   
Sbjct: 189 TAKPEIASYPFTTRGINVGQFED----GYFRYQ----IIDTPGLLDRPISERNEIEKQAI 240
Query: 183 XXXXXXXXXXXXIDAAAEN---PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD 239
                       I   +E+   P+ +   + EE+   + ++ + PF+VV+NKID+ +  +
Sbjct: 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV---HGEFKDLPFLVVINKIDVADEEN 297
Query: 240 --RLQSLTEEI----LKIGCDKVTSETELSSEDAVKSL 271
             RL+   +E     +KI   K T   +L  E+ +K+L
Sbjct: 298 IKRLEKFVKEKGLNPIKISALKGTG-IDLVKEEIIKTL 334

>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp Length = 396

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD---------GDPTLGAEKY 155
           +G+VGLPN GKST    +T+++    ++PF T+ PN  R+                A K 
Sbjct: 25  IGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKI 84
Query: 156 SSEATLADLPGLIEGAHLGKGLGRNF 181
            +   + D+ GL++GAH G+GLG  F
Sbjct: 85  PAFLNVVDIAGLVKGAHNGQGLGNAF 110

>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase Length = 392

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 106 GLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRL---DGDPTLGAEKYSSEA-- 159
           G+VG PN GKST   AIT +   + A+YP+ T+ P   ++   D       E Y  ++  
Sbjct: 24  GIVGXPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRV 83
Query: 160 ----TLADLPGLIEGAHLGKGLGRNF 181
               T+ D+ GL +GA  G GLG  F
Sbjct: 84  PAFLTVFDIAGLTKGASTGVGLGNAF 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	2e-83
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	2e-83
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	3e-41
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	6e-36
1wxq_A	397	GTP-binding protein; structural genomics, riken st	1e-26
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	1e-18
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	8e-18
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	6e-17
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	5e-16
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	1e-12
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	8e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-09
3llu_A	196	RAS-related GTP-binding protein C; structural geno	3e-09
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-08
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	3e-08
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	6e-07
1nrj_B	218	SR-beta, signal recognition particle receptor beta	9e-07
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-06
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	2e-06
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	4e-06
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	7e-06
2fh5_B	214	SR-beta, signal recognition particle receptor beta	1e-05
2ged_A	193	SR-beta, signal recognition particle receptor beta	1e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	2e-04
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	3e-04
2wji_A	165	Ferrous iron transport protein B homolog; membrane	4e-04
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	6e-04
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	9e-04

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Length = 342

 Score =  254 bits (650), Expect = 2e-83
 Identities = 101/233 (43%), Positives = 137/233 (58%), Gaps = 32/233 (13%)

Query: 24  GTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGI--SLLEVPENRRKRMTTLTTNIMRDDT 80
           GTVV      ++ +DL   G   ++ARGGRGG   S    P N   +++           
Sbjct: 92  GTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPANPAPQLSEN--------- 142

Query: 81  DKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN 140
                 G+ G+E  + L L+V+ADVGLVG P+ GKSTLL+ ++ AKP IADY FTTL+PN
Sbjct: 143 ------GEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN 196

Query: 141 LG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA 198
           LG    D   +           +ADLPGLIEGAH G GLG  FLRH+ RTR++VHVID +
Sbjct: 197 LGMVETDDGRSF---------VMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMS 247

Query: 199 A---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI 248
                +P +DY T+ +EL  YN    ERP I+V NK+D+PEA + L++  E++
Sbjct: 248 GLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL 300

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416

 Score =  256 bits (657), Expect = 2e-83
 Identities = 100/232 (43%), Positives = 136/232 (58%), Gaps = 27/232 (11%)

Query: 24  GTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDK 82
           GT V     G+L +DL   G  VLVARGG GG        N         +   +    +
Sbjct: 91  GTRVFDADTGELLADLTEEGQTVLVARGGAGGRG------NMH-----FVSPTRQ--APR 137

Query: 83  VLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG 142
               G+ GE+  L L L ++ADVGLVG PNAGKS+LLAA+T A P IA YPFTTL PNLG
Sbjct: 138 FAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG 197

Query: 143 --RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE 200
              +  +            TLAD+PG+IEGA  GKGLG  FLRH+ RTR+L++V+D AA+
Sbjct: 198 VVEVSEEERF---------TLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLD-AAD 247

Query: 201 NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG 252
            P+    T+++E+  Y+P  L RP +V LNK+DL E  + +++L + + + G
Sbjct: 248 EPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALAREG 298

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score =  141 bits (358), Expect = 3e-41
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 16/172 (9%)

Query: 95  LELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEK 154
           L  I      + L G PN GKS+ +  ++ A  D+  Y FTT    +G  D         
Sbjct: 22  LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK------- 74

Query: 155 YSSEATLADLPGLIEGAHLGKGLGR----NFLRHLRRTRLLVHVIDAAAENPVNDYRTVK 210
             ++  + D PGL++ A   +          L H+    +++ +ID  +E      +   
Sbjct: 75  -LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHIN--GVILFIID-ISEQCGLTIKEQI 130

Query: 211 EELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETEL 262
                    +  +  ++  NKID     D L    + ++K   D V +  + 
Sbjct: 131 NLFYSIKSVFSNKSIVIGFNKIDKCNM-DSLSIDNKLLIKQILDNVKNPIKF 181

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score =  131 bits (331), Expect = 6e-36
 Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 14/206 (6%)

Query: 52  RGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVS-LELILRVVADVGLVGL 110
           R      E+ E RR+    + + ++RD  D++  L +  E +  L ++   +  V + G 
Sbjct: 117 RYSNDPNEIAELRRQFYGRVAS-VLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGH 175

Query: 111 PNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 170
           PN GKSTLL A+T AKP+IA YPFTT   N+G+ +               + D PGL++ 
Sbjct: 176 PNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--------YFRYQIIDTPGLLDR 227

Query: 171 AHLGKGLG--RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVV 228
               +     +  L       L++++ D  +E+               + ++ + PF+VV
Sbjct: 228 PISERNEIEKQAILALRYLGNLIIYIFD-PSEHCGFPLEEQIHLFEEVHGEFKDLPFLVV 286

Query: 229 LNKIDLPEARDRLQSLTEEILKIGCD 254
           +NKID+ +  + ++ L + + + G +
Sbjct: 287 INKIDVADE-ENIKRLEKFVKEKGLN 311

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 Length = 397

 Score =  106 bits (268), Expect = 1e-26
 Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 35/150 (23%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--------RLDGDPTLGAEKYS 156
           +G+VG PN GKST  +A T    +IA+YPFTT+  N+G               L     +
Sbjct: 3   IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCK---EL-GCSPN 58

Query: 157 SEAT------------LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---- 200
            +              + D+ GL+ GAH G+GLG  FL  LR    L+HV+DA  +    
Sbjct: 59  PQNYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPE 118

Query: 201 -------NPVNDYRTVKEELRMYNPDYLER 223
                  +PV D   ++ E+  +    L +
Sbjct: 119 GQPTDYHDPVEDIEFLEREIDYWIYGILSK 148

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} Length = 396

 Score = 84.5 bits (210), Expect = 1e-18
 Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 50/215 (23%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-------RLDGDPTLGAEKYSS 157
           +G+VGLPN GKST    +T+++    ++PF T+ PN         R D    L  + +  
Sbjct: 25  IGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFD---FL-CQYHKP 80

Query: 158 E----ATLA--DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVI----D------AAAEN 201
                A L   D+ GL++GAH G+GLG  FL H+     + H+     D        + +
Sbjct: 81  ASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVD 140

Query: 202 PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETE 261
           P+ D   + EEL++ + + +                   +  L +  ++ G DK   + E
Sbjct: 141 PIRDIEIIHEELQLKDEEMIGP----------------IIDKLEKVAVRGG-DK-KLKPE 182

Query: 262 LSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIE 296
                 VKS   +  +      V    D  DKEIE
Sbjct: 183 YDIMCKVKSWVIDQKK-----PVRFYHDWNDKEIE 212

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Length = 392

 Score = 82.2 bits (204), Expect = 8e-18
 Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 28/143 (19%)

Query: 105 VGLVGLPNAGKSTLLAAITHA-KPDIADYPFTTLMPNLG-------RLDGDPTLGAEKYS 156
            G+VG+PN GKST   AIT +   + A+YP+ T+ P          R D    L  E Y 
Sbjct: 23  TGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFD---WL-CEAYK 78

Query: 157 SEATLA------DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVI----D------AAAE 200
            ++ +       D+ GL +GA  G GLG  FL H+R    +  V+    D          
Sbjct: 79  PKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDV 138

Query: 201 NPVNDYRTVKEELRMYNPDYLER 223
           +P+ D   + +EL + + +++E+
Sbjct: 139 DPIRDLSIIVDELLIKDAEFVEK 161

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 Length = 363

 Score = 79.4 bits (197), Expect = 6e-17
 Identities = 45/104 (43%), Positives = 57/104 (54%), Gaps = 17/104 (16%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-------RLDGDPTLGAEKYSS 157
            G+VGLPN GKSTL  A+T A  + A+YPF T+ PN G       RLD    L AE    
Sbjct: 5   CGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLD---AL-AEIVKP 60

Query: 158 EATLA------DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVI 195
           E  L       D+ GL+ GA  G+GLG  FL ++R T  + HV+
Sbjct: 61  ERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVV 104

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A Length = 368

 Score = 76.8 bits (190), Expect = 5e-16
 Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 21/108 (19%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-------RLDGDPTLGAEKYSS 157
           VG+VGLPN GKSTL  A+T A    A+YPF T+  N+G       RL     L    ++ 
Sbjct: 4   VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLY---AL-QRTFAK 59

Query: 158 EATLA----------DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVI 195
              +           D+ GL++GAH G+GLG  FL H+R    + HV+
Sbjct: 60  GERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVL 107

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 48/213 (22%), Positives = 78/213 (36%), Gaps = 31/213 (14%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163
           + + G  N GKS+ + A+      I +DY  TT  P    ++  P           TL D
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-------GPVTLVD 89

Query: 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER 223
            PGL +   LG+       R   R    + V D +A  P  D   V    +      +E 
Sbjct: 90  TPGLDDVGELGRLRVEKARRVFYRADCGILVTD-SAPTPYEDD--VVNLFK-----EMEI 141

Query: 224 PFIVVLNKIDL-PEARDRLQSLTEEILKIGCDKVTSET-----ELSSEDAVKSLSTEGGE 277
           PF+VV+NKID+  E  + L+ L E   +     V++       ++     +  +     E
Sbjct: 142 PFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDI--GKTISEILPGDEE 199

Query: 278 ----ADLL--SSVTSVKDKRDKEIEDYPRPLAV 304
                DL+    +  +    D       R +  
Sbjct: 200 IPYLGDLIDGGDLVILVVPIDLGAP-KGRLIMP 231

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Length = 364

 Score = 64.2 bits (157), Expect = 8e-12
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 21/150 (14%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYS-SEATLAD 163
           +G+VG  N+GK++L  ++T     +    FTT+          P   A   +  +  L D
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTM---------SPKRYAIPINNRKIMLVD 232

Query: 164 LPGLIEGAHLGKGLGRNF---LRHLRRTRLLVHVIDAAAENPVND--YRTVKEELRMYNP 218
             G I    +   +   F   L   + +  L+ VID+     +     ++  E LR    
Sbjct: 233 TVGFIR--GIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGV 290

Query: 219 DYLERPFIVVLNKIDL--PEARDRLQSLTE 246
               +P +V LNKID    +   +L  + +
Sbjct: 291 S--GKPILVTLNKIDKINGDLYKKLDLVEK 318

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 2e-11
 Identities = 43/260 (16%), Positives = 76/260 (29%), Gaps = 88/260 (33%)

Query: 74  NIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYP 133
           N+ R      L L Q   E      LR   +V + G+  +GK+ +   +         Y 
Sbjct: 130 NVSR--LQPYLKLRQALLE------LRPAKNVLIDGVLGSGKTWVALDV------CLSYK 175

Query: 134 FTTLMP------NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRR 187
               M       NL   +          S E  L  L  L+    +          H   
Sbjct: 176 VQCKMDFKIFWLNLKNCN----------SPETVLEMLQKLL--YQIDPNWTSR-SDHSSN 222

Query: 188 TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEE 247
            +L +H              +++ ELR        +P+   L  + L   ++       +
Sbjct: 223 IKLRIH--------------SIQAELRRL---LKSKPYENCL--LVLLNVQNA------K 257

Query: 248 ILK---IGC-------DK-VT------SETELSSEDAVKSLSTEGGEADLLSSVTSVKDK 290
                 + C        K VT      + T +S +    +L+ +  +  LL      +  
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCR-- 314

Query: 291 RDKEIEDYPR------PLAV 304
                +D PR      P  +
Sbjct: 315 ----PQDLPREVLTTNPRRL 330

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 5e-06
 Identities = 34/264 (12%), Positives = 79/264 (29%), Gaps = 61/264 (23%)

Query: 71  LTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNA--GKSTLLAAITHAKPD 128
           L  + ++ +  ++L    +     L L+L  V +       NA      +L  +T     
Sbjct: 225 LRIHSIQAELRRLLKSKPYEN--CL-LVLLNVQNAKAW---NAFNLSCKIL--LTTRFKQ 276

Query: 129 IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA--------DLPGLIEGAHLGKGLGRN 180
           + D+       ++  LD   ++       ++ L         DLP  +   +        
Sbjct: 277 VTDFLSAATTTHI-SLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP------- 327

Query: 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR 240
                      + +I  +  + +  +    +  +  N D L       LN ++  E R  
Sbjct: 328 ---------RRLSIIAESIRDGLATW----DNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 241 LQSL---------TEEILKIG-CDKVTSETELS-SEDAVKSLSTEGGEA----------D 279
              L            +L +   D + S+  +  ++    SL  +  +           +
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 280 LLSSVTSVKDKRDKEIEDYPRPLA 303
           L   + +        ++ Y  P  
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKT 458

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 26/168 (15%)

Query: 107 LVGLPNAGKSTLLAAITHA-KPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 165
           L+G+   GKS++   + H  +P    Y  +T  P+L        L          + +LP
Sbjct: 4   LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDL---------AVMELP 54

Query: 166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLER 223
           G +           +  R  +    LV+VID+     N + +   + E     NP     
Sbjct: 55  GQLN----YFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPS---I 107

Query: 224 PFIVVLNKIDL-------PEARDRLQSLTEEILKIGCDKVTSETELSS 264
              V+++K+D           RD +Q   EE+L++G D V     L+S
Sbjct: 108 NIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS 155

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 24/168 (14%)

Query: 107 LVGLPNAGKSTLLAAITH-AKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 165
           L+GL  +GKS++   + H   P+   +  +T       +     +          + D P
Sbjct: 25  LMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFV-------NFQIWDFP 77

Query: 166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLER 223
           G ++          ++    R T  L++VIDA  +    +        +    NPD    
Sbjct: 78  GQMD----FFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPD---M 130

Query: 224 PFIVVLNKIDLPEA-------RDRLQSLTEEILKIGCDKVTSETELSS 264
            F V ++K+D           RD  Q   +++   G +K+     L+S
Sbjct: 131 NFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTS 178

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 37/187 (19%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEK----YSSEAT 160
           + L+G   +GKS++ + I        D                 T+  E     +    T
Sbjct: 6   LLLMGRSGSGKSSMRSIIFS-NYSAFDTRRLG-----------ATIDVEHSHLRFLGNMT 53

Query: 161 LA--DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVND---YRTVKEELRM 215
           L   D  G            +      +  ++L+HV D  +   + D   +    ++LR 
Sbjct: 54  LNLWDCGGQDVFME--NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRK 111

Query: 216 YNPDYLERPFIVVLNKIDLPEA-------RDRLQSLTEEILKIGCDKV----TSETELSS 264
           Y+PD       V+L+K+DL +        +  +++L+E   + G   +    TS  + S 
Sbjct: 112 YSPD---AKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESL 168

Query: 265 EDAVKSL 271
             A   +
Sbjct: 169 YKAWSQI 175

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 28/163 (17%), Positives = 49/163 (30%), Gaps = 23/163 (14%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDG----D-PTLGAEKYSSEA 159
           +   G  N GKSTL+  +T  K      P  T              D P  G      + 
Sbjct: 4   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 63

Query: 160 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTV----KEELRM 215
               +   I               + +   + V V+D  A   +            ++  
Sbjct: 64  VQERIKDEIVHF---------IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEF 114

Query: 216 YNPDYLER---PFIVVLNKIDLPEARDRLQSLTEEILKIGCDK 255
           Y   +L     P IV +NK+D  +    + +   E  ++   +
Sbjct: 115 Y--QFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSE 155

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score = 49.0 bits (118), Expect = 6e-07
 Identities = 43/156 (27%), Positives = 63/156 (40%), Gaps = 28/156 (17%)

Query: 105 VGLVGLPNAGKSTLL-------AAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSS 157
           V +VG PN GKSTLL        +I   K        TT M    R+ G   +  E   +
Sbjct: 13  VAIVGKPNVGKSTLLNNLLGTKVSIISPKAG------TTRM----RVLGVKNIPNE---A 59

Query: 158 EATLADLPGLIEGAH---LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELR 214
           +    D PG+ E      LG  +     + L    +++ +IDA       D    +  ++
Sbjct: 60  QIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIK 119

Query: 215 MYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK 250
                 L +P IVV+NKID       +  L +EI K
Sbjct: 120 P-----LNKPVIVVINKIDKIGPAKNVLPLIDEIHK 150

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 38/215 (17%), Positives = 69/215 (32%), Gaps = 39/215 (18%)

Query: 107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 166
           + G  N+GK++LL  +T              + +       P   A+   S  TL D PG
Sbjct: 17  IAGPQNSGKTSLLTLLTTDS-------VRPTVVSQE-----PLSAADYDGSGVTLVDFPG 64

Query: 167 LIEGAH--LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEEL-RMYNPDYLER 223
                H  L   L        +  + L+ ++D+  +       T  E L  + +      
Sbjct: 65  -----HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD--PKKLTTTAEFLVDILSITESSC 117

Query: 224 ----PFIVVLNKIDLPEARDRL---QSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG 276
                 ++  NK +L  AR       +L  EI K+   +  S         +  +  +  
Sbjct: 118 ENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS---------LNEVERKIN 168

Query: 277 EADLLSSVTSVKDKRDK-EIEDYPRPLAVVGVSVL 310
           E D   +   V    D  +  +    +     S+ 
Sbjct: 169 EEDYAENTLDVLQSTDGFKFANLEASVVAFEGSIN 203

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 35/158 (22%), Positives = 56/158 (35%), Gaps = 35/158 (22%)

Query: 96  ELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKY 155
           E+  ++V      G   +GK+T L  I    P+       +L       + + TL     
Sbjct: 12  EINFKIV----YYGPGLSGKTTNLKWIYSKVPEGRKGEMVSL-----ATEDERTLFF--- 59

Query: 156 SSEATLADLPGLIEGAHLGKGL--------GRNFLRHLRRTRL-----LVHVIDAAAENP 202
                  D   L  G   G           G+ F    R+  L     +V V D+A    
Sbjct: 60  -------DFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRL 112

Query: 203 VND---YRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237
             +    R ++E L  Y     + P ++ +NK DLP+A
Sbjct: 113 RANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA 150

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 24/146 (16%)

Query: 94  SLELILRVVADVGLVGLPNAGKSTLLAAIT---HAKPDIA--DYPFTTLMPNLGRLDGDP 148
           +L+ I   V +V + G   +GKS+ +  +    + +   A       T+  +  +    P
Sbjct: 61  ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP 120

Query: 149 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRT 208
            +            DLPG+             +L  ++       +I +A     ND   
Sbjct: 121 NV---------VFWDLPGI----GSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDI 167

Query: 209 VKEELRMYNPDYLERPFIVVLNKIDL 234
            K    M      ++ F  V  K+D 
Sbjct: 168 AKAISMM------KKEFYFVRTKVDS 187

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 35/145 (24%), Positives = 51/145 (35%), Gaps = 26/145 (17%)

Query: 105 VGLVGLPNAGKSTLL-------AAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSS 157
           V +VG PN GKSTLL        A    +P       TT     G L             
Sbjct: 10  VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQ------TTRKRLRGILTEG--------RR 55

Query: 158 EATLADLPGLIEGAH-LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY 216
           +    D PGL +    LG+ + +     L     +V V+D        D   V   L+  
Sbjct: 56  QIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPL 114

Query: 217 NPDYLERPFIVVLNKIDLPEARDRL 241
                + P ++V NK+D  +  +  
Sbjct: 115 VG---KVPILLVGNKLDAAKYPEEA 136

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301

 Score = 45.9 bits (110), Expect = 7e-06
 Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 30/153 (19%)

Query: 105 VGLVGLPNAGKSTLL-------AAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSS 157
           + +VG PN GKSTLL        +IT  K        TT    +G               
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQ------TTRHRIVGIHTEGA--------Y 56

Query: 158 EATLADLPGLIEGAH--LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM 215
           +A   D PGL       + + + +     +    L++ V++     P ++   V  +LR 
Sbjct: 57  QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEM--VLNKLR- 113

Query: 216 YNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI 248
                 + P I+ +NK+D  + +  L    + +
Sbjct: 114 ----EGKAPVILAVNKVDNVQEKADLLPHLQFL 142

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 22/137 (16%)

Query: 107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 166
            VGL ++GK+ L   +   +        T++  +         +   + +S  TL DLPG
Sbjct: 12  FVGLCDSGKTLLFVRLLTGQYRDT---QTSITDSSAIY----KVNNNRGNS-LTLIDLPG 63

Query: 167 LIEGAHLGKGLGRNFLRH-LRRTRLLVHVIDAAAENPVNDYRTVKEELR--MYNPDYLER 223
                H  + L    L       R +V V+D+AA     + + V E L   + +   L+ 
Sbjct: 64  -----H--ESLRFQLLDRFKSSARAVVFVVDSAAFQ--REVKDVAEFLYQVLIDSMALKN 114

Query: 224 --PFIVVLNKIDLPEAR 238
               ++  NK D+  A+
Sbjct: 115 SPSLLIACNKQDIAMAK 131

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 26/139 (18%)

Query: 107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 166
           + G  N+GK++LL  +T              + +       P   A+   S  TL D PG
Sbjct: 53  IAGPQNSGKTSLLTLLTTDS-------VRPTVVSQE-----PLSAADYDGSGVTLVDFPG 100

Query: 167 LIEGAHLG-KGLGRNFLR-HLRRTRLLVHVIDAAAENPVNDYRTVKEEL-RMYNPDYLER 223
                H+  +    ++L+   +  + L+ ++D+  +       T  E L  + +      
Sbjct: 101 -----HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK--KLTTTAEFLVDILSITESSC 153

Query: 224 ----PFIVVLNKIDLPEAR 238
                 ++  NK +L  AR
Sbjct: 154 ENGIDILIACNKSELFTAR 172

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 50/213 (23%), Positives = 76/213 (35%), Gaps = 65/213 (30%)

Query: 59  EVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTL 118
           +V    R  +T     + R + ++++   QHG       I+       + G PNAGKSTL
Sbjct: 197 DVEFQSRDELTMQIETL-RSEVNRLIDSYQHGR------IVSEGVSTVIAGKPNAGKSTL 249

Query: 119 LAAITHAKPDIA---DYPFTTLMPNLGR--------LDGDPTLGAEKYSSEATLADLPGL 167
           L  +     + A     P TT      R         D               L D  GL
Sbjct: 250 LNTLLGQ--ERAIVSHMPGTT------RDYIEECFIHDKTM----------FRLTDTAGL 291

Query: 168 ------IEGAHLGKGLGRNFLRHLRRTR-------LLVHVIDAAAENPVNDYRTVKEELR 214
                 IE  H G          +RR+R       L+++++D   E  ++D  T   EL+
Sbjct: 292 REAGEEIE--HEG----------IRRSRMKMAEADLILYLLDLGTE-RLDDELTEIRELK 338

Query: 215 MYNPDYLERPFIVVLNKIDLPEARDRLQSLTEE 247
             +P      F+ V NK+D     D L     +
Sbjct: 339 AAHPA---AKFLTVANKLDRAANADALIRAIAD 368

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 34/167 (20%), Positives = 53/167 (31%), Gaps = 57/167 (34%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIA---DYPFTTLMPNLGR--------LDGDPTLGAE 153
           V + G PNAGKS+LL A+     + A   D   TT      R        +DG P     
Sbjct: 7   VVIAGRPNAGKSSLLNALAGR--EAAIVTDIAGTT------RDVLREHIHIDGMP----- 53

Query: 154 KYSSEATLADLPGL------IEGAHLGKGLGRNFLRHLRRTR-------LLVHVIDAAAE 200
                  + D  GL      +E   +G          + R          ++ ++D    
Sbjct: 54  -----LHIIDTAGLREASDEVE--RIG----------IERAWQEIEQADRVLFMVDGTTT 96

Query: 201 NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEE 247
           + V+      E +          P  VV NK D+      +  +   
Sbjct: 97  DAVDPAEIWPEFIARLPAK---LPITVVRNKADITGETLGMSEVNGH 140

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 25/139 (17%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164
           + L+G PN GKST+  A+T     I ++P  T+    G  + +          +  + DL
Sbjct: 6   IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE--------KFKVVDL 57

Query: 165 PGL--IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-ENPVNDYRT--VKEELRMYNPD 219
           PG+  +    + + + R+++ +  +  L+V+++DA A E   N Y T  + E        
Sbjct: 58  PGVYSLTANSIDEIIARDYIIN-EKPDLVVNIVDATALER--NLYLTLQLME-------- 106

Query: 220 YLERPFIVVLNKIDLPEAR 238
            +    ++ LNK+DL ++ 
Sbjct: 107 -MGANLLLALNKMDLAKSL 124

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 25/139 (17%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164
           + L+G PN GKST+  A+T     I ++P  T+    G  + +          +  + DL
Sbjct: 10  IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE--------KFKVVDL 61

Query: 165 PGL--IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-ENPVNDYRT--VKEELRMYNPD 219
           PG+  +    + + + R+++ +  +  L+V+++DA A E   N Y T  + E        
Sbjct: 62  PGVYSLTANSIDEIIARDYIIN-EKPDLVVNIVDATALER--NLYLTLQLME-------- 110

Query: 220 YLERPFIVVLNKIDLPEAR 238
            +    ++ LNK+DL ++ 
Sbjct: 111 -MGANLLLALNKMDLAKSL 128

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Length = 272

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 42/214 (19%), Positives = 84/214 (39%), Gaps = 39/214 (18%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164
           + L+G PN+GK++L   IT     + ++P  T+    G +  +  L          + DL
Sbjct: 6   IALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDL---------EIQDL 56

Query: 165 PGL--IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-ENPVNDYRTV--KEELRMYNPD 219
           PG+  +        + R++L   +R   +++V+DA   E   N Y T    E        
Sbjct: 57  PGIYSMSPYSPEAKVARDYLLS-QRADSILNVVDATNLER--NLYLTTQLIE-------- 105

Query: 220 YLERPFIVVLNKIDLPEAR------DRLQSL-------TEEILKIGCDKVTSETELSSED 266
               P  + LN ID+ + +      D+L          T  + + G D+V  +   ++  
Sbjct: 106 -TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTTS 164

Query: 267 AVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPR 300
            V  L+    +  L ++++ + +     +     
Sbjct: 165 TVGDLAFPIYDDRLEAAISQILEVLGNSVPQRSA 198

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	100.0
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	100.0
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.9
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.89
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.87
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.87
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.87
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.86
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.86
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.86
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.86
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.86
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.86
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.86
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.86
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.86
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.86
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.85
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.85
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.85
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.85
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.85
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.85
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.85
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.85
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.85
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.85
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.85
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.85
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.85
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.85
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.85
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.85
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.85
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.85
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.85
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.85
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.85
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.85
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.85
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.84
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.84
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.84
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.84
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.84
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.84
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.84
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.84
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.84
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.84
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.84
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.84
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.84
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.84
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.84
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.84
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.84
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.84
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.84
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.84
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.84
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.84
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.84
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.84
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.84
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.84
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.84
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.84
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.84
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.84
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.83
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.83
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.83
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.83
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.83
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.83
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.83
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.83
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.83
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.83
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.83
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.83
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.83
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.83
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.83
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.83
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.83
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.83
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.83
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.83
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.83
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.83
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.83
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.83
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.83
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.82
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.82
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.82
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.82
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.82
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.82
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.82
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.82
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.82
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.82
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.82
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.81
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.81
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.81
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.81
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.81
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.81
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.81
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.81
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.81
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.81
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.81
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.81
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.8
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.8
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.8
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.8
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.8
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.8
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.8
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.79
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.79
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.79
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.79
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.79
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.79
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.78
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.78
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.78
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.65
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.78
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.78
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.77
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.76
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.75
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.75
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.75
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.73
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.73
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.73
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.72
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.71
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.71
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.71
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.71
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.71
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.7
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.7
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.69
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.69
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.69
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.68
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.68
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.68
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.68
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.67
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.67
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.66
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.66
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.66
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.65
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.65
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.65
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.65
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.63
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.63
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.62
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.62
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.61
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.6
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.6
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.6
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.59
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.57
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.57
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.57
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.56
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.55
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.55
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.53
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.52
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.5
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.5
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.49
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.48
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.47
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.44
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.43
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.41
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.38
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.37
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.37
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.36
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.33
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.31
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.3
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.29
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.11
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.1
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.01
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.95
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.91
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.89
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.85
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.82
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.81
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.8
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.74
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	98.74
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.74
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	98.64
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.61
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.53
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.44
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.43
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.42
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.39
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.36
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.14
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.12
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.11
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.02
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.0
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.98
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.98
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.72
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.71
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.61
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.58
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.56
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.56
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.53
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.51
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.5
2xxa_A	433	Signal recognition particle protein; protein trans	97.46
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.39
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.38
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.32
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.25
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.24
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.19
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.07
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.02
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.98
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.94
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.94
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.93
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.87
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.83
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.82
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.75
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.75
1g6h_A	257	High-affinity branched-chain amino acid transport	96.74
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.73
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.73
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.73
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.73
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.72
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.71
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.71
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.7
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.69
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.69
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.67
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.65
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.64
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.64
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.63
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.61
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.6
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.59
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.59
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.56
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.56
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.53
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.5
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.5
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.48
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.48
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.47
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.46
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.46
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.44
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.39
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.38
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.35
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.34
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.34
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.29
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.28
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.28
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.28
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.25
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.23
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.22
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.21
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.21
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.2
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.19
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.18
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.18
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.18
3end_A	307	Light-independent protochlorophyllide reductase ir	96.15
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.14
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.13
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.12
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.11
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.08
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.07
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.06
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.04
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.96
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.95
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.93
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.92
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.89
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.87
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.87
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.86
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.86
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.84
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.81
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.79
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.78
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.78
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.78
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.74
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.74
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.69
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.64
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.64
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	95.58
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.58
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.54
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.54
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.52
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.49
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.49
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.47
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.45
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.45
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.43
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.4
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.38
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.36
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.34
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.32
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.31
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.31
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.3
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.29
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.28
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.24
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.23
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.23
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.18
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.17
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.1
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.09
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.07
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.06
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.05
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.04
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.02
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.02
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.02
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.01
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.92
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.92
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	94.91
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.9
1via_A	175	Shikimate kinase; structural genomics, transferase	94.9
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.89
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.89
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.86
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	94.84
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	94.84
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.8
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.8
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	94.79
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	94.78
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.77
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.77
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	94.74
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	94.74
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.73
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.73
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	94.71
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.69
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.67
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	94.65
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.64
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	94.63
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.62
2og2_A	359	Putative signal recognition particle receptor; nuc	94.59
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	94.56
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	94.55
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	94.54
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.52
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.5
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.49
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.48
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	94.46
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.45
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.45
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.39
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.36
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	94.36
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	94.34
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.33
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.32
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.32
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	94.3
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.28
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.28
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.27
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	94.26
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.26
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.26
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.24
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	94.23
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	94.21
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	94.19
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.18
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	94.14
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.11
2cvh_A	220	DNA repair and recombination protein RADB; filamen	94.09
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.09
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.01
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	93.99
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.89
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	93.86
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	93.8
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	93.75
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	93.73
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	93.63
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	93.61
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	93.6
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	93.59
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	93.52
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	93.47
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	93.39
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	93.39
1tue_A	212	Replication protein E1; helicase, replication, E1E	93.35
3bos_A	242	Putative DNA replication factor; P-loop containing	93.3
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	93.3
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	93.24
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	93.17
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	93.16
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	93.1
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	93.07
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	93.05
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	92.97
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	92.97
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	92.93
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	92.93
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	92.89
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	92.88
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	92.76
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	92.62
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	92.6
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	92.52
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	92.52
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	92.45
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	92.41
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	92.38
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	92.37
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	92.34
2chg_A	226	Replication factor C small subunit; DNA-binding pr	92.31
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	92.31
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	92.29
3pvs_A	447	Replication-associated recombination protein A; ma	92.2
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	92.18
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	92.07
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	92.06
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	91.94
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	91.9
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	91.9
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	91.9
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	91.85
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	91.76
1e69_A	322	Chromosome segregation SMC protein; structural mai	91.64
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	91.62
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	91.43
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	91.36
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	91.32
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	91.27
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	91.14
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	91.13
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	91.08
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	91.08
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	91.04
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	90.94
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	90.88

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=100.00  E-value=2.1e-43  Score=327.82  Aligned_cols=239  Identities=42%  Similarity=0.694  Sum_probs=207.7

Q ss_pred             ceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeehh
Q 021615           19 HIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLE   96 (310)
Q Consensus        19 ~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~   96 (310)
                      .+.| +||+|+| +++++++||++++|++++|+||.||.||++|..+.+             ..|+.++.|.+|+.+.+.
T Consensus        86 ~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~-------------~~p~~~~~g~~g~~~~~~  152 (342)
T 1lnz_A           86 VIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPAN-------------PAPQLSENGEPGKERYIV  152 (342)
T ss_dssp             EEEECTTEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGSCBTTB-------------SSCCCCCCCCCCCEEEEE
T ss_pred             EEEcCCccEEEeCCCCcEehhhhcCCcEEEEeCCCCCccCccccccccc-------------cccccccCCCCcchhhHh
Confidence            3455 8999999 689999999999999999999999999998875432             255778899999999999


Q ss_pred             hhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615           97 LILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  176 (310)
Q Consensus        97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~  176 (310)
                      +++|.+++|+|+|.||||||||+|+|++.++.+++++|||+.|+.+.+.....       ..+.+|||||+++.++...+
T Consensus       153 leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-------~~~~l~DtPG~i~~a~~~~~  225 (342)
T 1lnz_A          153 LELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-------RSFVMADLPGLIEGAHQGVG  225 (342)
T ss_dssp             EEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-------CEEEEEEHHHHHHHTTCTTT
T ss_pred             hhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-------ceEEEecCCCCcccccccch
Confidence            99999999999999999999999999999988899999999999998876531       27999999999988887788


Q ss_pred             HHHHHHHHhhhcCEEEEecccCC---CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-cC
Q 021615          177 LGRNFLRHLRRTRLLVHVIDAAA---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-IG  252 (310)
Q Consensus       177 l~~~~~~~l~~~d~il~VvD~s~---~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-~g  252 (310)
                      +...|++++++||++++|+|+++   ..+++++..|..+|..|.+.+.++|+++|+||+|+....+..+.+.+.+.. ..
T Consensus       226 l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~  305 (342)
T 1lnz_A          226 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYP  305 (342)
T ss_dssp             THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCC
T ss_pred             hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCC
Confidence            99999999999999999999998   788999999999999987766789999999999998765545555544432 35


Q ss_pred             CCccccCccCCHHHHHHHHhhccCC
Q 021615          253 CDKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      +..+||+++.|+++++..+.....+
T Consensus       306 v~~iSA~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          306 VFPISAVTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             BCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHhh
Confidence            6779999999999999998776643

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=100.00  E-value=3.1e-37  Score=292.74  Aligned_cols=237  Identities=44%  Similarity=0.688  Sum_probs=202.4

Q ss_pred             ceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeehh
Q 021615           19 HIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLE   96 (310)
Q Consensus        19 ~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~   96 (310)
                      .+.| +||+|+| +++++++||++++|++++|+||.||.||++|..+.|             ..|+.++.|.+|+.+.+.
T Consensus        85 ~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~-------------~~p~~~~~g~~g~~~~i~  151 (416)
T 1udx_A           85 VIEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSPTR-------------QAPRFAEAGEEGEKRRLR  151 (416)
T ss_dssp             EEEECSSEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGGCCSSC-------------SSCCEEECCCCCCEEEEE
T ss_pred             EEecCCccEEEecCCCcEEeeccCCCceEEEecCCCCCcccceeecccc-------------cCcccccCCCCceEeeee
Confidence            3455 8999999 689999999999999999999999999998875432             356788999999999999


Q ss_pred             hhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615           97 LILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  176 (310)
Q Consensus        97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~  176 (310)
                      ++++...+|+|||++|||||||+++|++..+.++++++||+.|+.+.+.....       ..+.++||||+++.++...+
T Consensus       152 lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~-------~~~~l~DtpGli~~a~~~~~  224 (416)
T 1udx_A          152 LELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-------ERFTLADIPGIIEGASEGKG  224 (416)
T ss_dssp             EEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS-------CEEEEEECCCCCCCGGGSCC
T ss_pred             eEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc-------ceEEEEeccccccchhhhhh
Confidence            99999999999999999999999999999888899999999999998876431       26899999999987776677


Q ss_pred             HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc--CCC
Q 021615          177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCD  254 (310)
Q Consensus       177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~--g~~  254 (310)
                      +...|++++++|+.+++|+|++ ..+..++..+.+++..+...+..+|.++|+||+|+... +..+.+.+.+...  .+.
T Consensus       225 L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~vi  302 (416)
T 1udx_A          225 LGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALAREGLAVL  302 (416)
T ss_dssp             SCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSCEE
T ss_pred             hhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHHHHHhcCCeEE
Confidence            7778889999999999999998 67788888888888877544457899999999999876 5566666666654  355


Q ss_pred             ccccCccCCHHHHHHHHhhccCC
Q 021615          255 KVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      .+||+++.|+++++..+.....+
T Consensus       303 ~iSA~~g~gi~eL~~~i~~~l~~  325 (416)
T 1udx_A          303 PVSALTGAGLPALKEALHALVRS  325 (416)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEECCCccCHHHHHHHHHHHHHh
Confidence            68999999999999998765543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5.1e-24  Score=199.17  Aligned_cols=126  Identities=32%  Similarity=0.535  Sum_probs=109.6

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ...++|+|||+||||||||+|+|++.++.+++|||||++|+.+.+.+.+.        +++++||||++++++...+++.
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--------~i~l~D~pGl~~~a~~~~~~g~  141 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--------KIQMLDLPGIIDGAKDGRGRGK  141 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--------EEEEEECGGGCCC-----CHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--------EEEEEeCCCccCCchhhhHHHH
Confidence            34578999999999999999999999988999999999999999987643        8999999999999999999999


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      +|+.+++.||++++|+|++  ++..+.+.+..+|..+...+..+|.++++||+|..
T Consensus       142 ~~l~~i~~ad~il~vvD~~--~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          142 QVIAVARTCNLLFIILDVN--KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             HHHHHHHHCSEEEEEEETT--SHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             HHHHHHHhcCccccccccC--ccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            9999999999999999998  46778888889999887766788999999999974

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.89  E-value=1.8e-22  Score=184.83  Aligned_cols=163  Identities=28%  Similarity=0.330  Sum_probs=122.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCC-CCCCCccCCCceEEEeCCCCCcccc---CCchHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGD-PTLGAEKYSSEATLADLPGLIEGAH---LGKGLG  178 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~-~~~~~~~~~~~~~i~DtPG~~~~~~---~~~~l~  178 (310)
                      .|+++|.||||||||+|+|++.+..+ ++.+.||.....+.+... .        ..+.+|||||+.+...   .+..+.
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--------~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--------AQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--------EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--------CeEEEEECcCCCccccchhHHHHHH
Confidence            49999999999999999999998765 888999988777766543 2        2799999999987531   123344


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-hc----CC
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-KI----GC  253 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-~~----g~  253 (310)
                      ..+..++..+|++++|+|+++.....+...|.+.+..     .+.|+++|+||+|+....+......+.+. .+    .+
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i  158 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI  158 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence            4556678899999999999988888877766777765     36899999999999832222233333332 33    35


Q ss_pred             CccccCccCCHHHHHHHHhhccCCcc
Q 021615          254 DKVTSETELSSEDAVKSLSTEGGEAD  279 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~~~~~  279 (310)
                      ..+||+++.|+++++..+.....+..
T Consensus       159 ~~vSA~~g~gv~~L~~~l~~~l~~~~  184 (308)
T 3iev_A          159 VPISALKGANLDELVKTILKYLPEGE  184 (308)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhCccCC
Confidence            56999999999999999988775543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.87  E-value=2.1e-22  Score=170.54  Aligned_cols=162  Identities=15%  Similarity=0.104  Sum_probs=118.0

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ...++|+++|.+|||||||+++|++........+.++.......+.....    .  ..+.+|||||+.+...       
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~i~Dt~G~~~~~~-------   80 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK----T--IKLQIWDTAGQERFRT-------   80 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTE----E--EEEEEEEECCSGGGCT-------
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCE----E--EEEEEEECCCcHhhhh-------
Confidence            34578999999999999999999988765555555555554444443221    1  2689999999866532       


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~  256 (310)
                      ....+++.+|++++|+|+++..+++....|+.++..+..  .+.|+++|+||+|+...... .+...+....  ..+.++
T Consensus        81 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  158 (196)
T 3tkl_A           81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET  158 (196)
T ss_dssp             THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEE
T ss_pred             hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEE
Confidence            233556789999999999998888888888888877643  46899999999999754321 1222223333  356669


Q ss_pred             ccCccCCHHHHHHHHhhccC
Q 021615          257 TSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~~  276 (310)
                      ||+++.|++++|..+.....
T Consensus       159 Sa~~g~gv~~l~~~l~~~i~  178 (196)
T 3tkl_A          159 SAKNATNVEQSFMTMAAEIK  178 (196)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999877653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.87  E-value=2.9e-22  Score=163.99  Aligned_cols=157  Identities=27%  Similarity=0.304  Sum_probs=106.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ++|+++|.+|+|||||+++|.+.... ..+++.+|.......+....        ..+.+|||||+.+.......+...+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~~   73 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--------GRFLLVDTGGLWSGDKWEKKIQEKV   73 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--------EEEEEEECGGGCSSSSCCHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--------ceEEEEECCCCCCccchHHHHHHHH
Confidence            68999999999999999999988754 36677777766665555432        2689999999987543334455556


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccCcc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETE  261 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~  261 (310)
                      ..+++.+|++++|+|+++...... ..+.+.+..     .+.|+++|+||+|+.+..+...++. .+....+.++|++++
T Consensus        74 ~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~Sa~~~  146 (161)
T 2dyk_A           74 DRALEDAEVVLFAVDGRAELTQAD-YEVAEYLRR-----KGKPVILVATKVDDPKHELYLGPLY-GLGFGDPIPTSSEHA  146 (161)
T ss_dssp             HHHTTTCSEEEEEEESSSCCCHHH-HHHHHHHHH-----HTCCEEEEEECCCSGGGGGGCGGGG-GGSSCSCEECBTTTT
T ss_pred             HHHHHhCCEEEEEEECCCcccHhH-HHHHHHHHh-----cCCCEEEEEECcccccchHhHHHHH-hCCCCCeEEEecccC
Confidence            677889999999999998654433 233344443     3689999999999986543333332 111114567999999


Q ss_pred             CCHHHHHHHHhhc
Q 021615          262 LSSEDAVKSLSTE  274 (310)
Q Consensus       262 ~gi~~l~~~l~~~  274 (310)
                      .|++++|..+...
T Consensus       147 ~gv~~l~~~l~~~  159 (161)
T 2dyk_A          147 RGLEELLEAIWER  159 (161)
T ss_dssp             BSHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHh
Confidence            9999999998654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.87  E-value=1.2e-21  Score=162.37  Aligned_cols=155  Identities=22%  Similarity=0.368  Sum_probs=106.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC--chHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~--~~l~~~  180 (310)
                      .+|+++|++|||||||+|+|++....++.+|++|.....+.+....        ..+.+|||||+.+.....  +.+...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~l~i~Dt~G~~~~~~~~~~~~~~~~   75 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--------EKFKVVDLPGVYSLTANSIDEIIARD   75 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--------EEEEEEECCCCSCSSSSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--------cEEEEEECCCcccCCCcchhHHHHHH
Confidence            5799999999999999999999876667788888877776665432        278999999998753221  123333


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~~~s  257 (310)
                      +++ ...+|++++|+|+++.   +....|..++..     .+.|+++|+||+|+.....   ..+.+.+.+ ...+.++|
T Consensus        76 ~~~-~~~~~~~i~v~D~~~~---~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~S  145 (165)
T 2wji_A           76 YII-NEKPDLVVNIVDATAL---ERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL-GVKVVPLS  145 (165)
T ss_dssp             HHH-HHCCSEEEEEEETTCH---HHHHHHHHHHHH-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECB
T ss_pred             HHh-cCCCCEEEEEecCCch---hHhHHHHHHHHh-----cCCCEEEEEEchHhccccChhhHHHHHHHHh-CCCEEEEE
Confidence            332 1379999999999863   333445566654     3689999999999853211   133444333 24566799


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |+++.|++++|..+....
T Consensus       146 A~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          146 AAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             GGGTBSHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHh
Confidence            999999999999986643

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.86  E-value=1.3e-21  Score=178.58  Aligned_cols=163  Identities=24%  Similarity=0.247  Sum_probs=115.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~~  180 (310)
                      .+|+++|.||||||||+|+|++.+..+ ++.|.||.....+.+....        .++.+|||||+.+... .+..+...
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--------~~l~l~DTpG~~~~~~~l~~~~~~~   79 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--------RQIVFVDTPGLHKPMDALGEFMDQE   79 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--------EEEEEEECCCCCCCCSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--------cEEEEecCccccchhhHHHHHHHHH
Confidence            359999999999999999999998765 7788888866555554322        2789999999976422 11223445


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHH-HhcCCCccccC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-LKIGCDKVTSE  259 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l-~~~g~~~~sa~  259 (310)
                      +..+++.+|++++|+|+++.....+ ..+++.+..+.   .+.|+++|+||+|+...........+.+ ....+.++||+
T Consensus        80 ~~~~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~  155 (301)
T 1wf3_A           80 VYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV---GKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSAL  155 (301)
T ss_dssp             HHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT---TTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTT
T ss_pred             HHHHHhcCCEEEEEEECCCCCChHH-HHHHHHHHhhc---CCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCC
Confidence            5677889999999999988655543 34456666542   2689999999999986543122222222 01123458999


Q ss_pred             ccCCHHHHHHHHhhccCC
Q 021615          260 TELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~~~  277 (310)
                      ++.|++++++.+...+.+
T Consensus       156 ~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          156 DERQVAELKADLLALMPE  173 (301)
T ss_dssp             CHHHHHHHHHHHHTTCCB
T ss_pred             CCCCHHHHHHHHHHhccc
Confidence            999999999999876643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.86  E-value=1.2e-21  Score=161.68  Aligned_cols=159  Identities=14%  Similarity=0.076  Sum_probs=108.6

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++........+.++.+.....+....    ..  ..+.+|||||+.+....       +
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~l~D~~G~~~~~~~-------~   69 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING----KK--VKLQIWDTAGQERFRTI-------T   69 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSS----CE--EEEEEECCTTGGGTSCC-------C
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC----EE--EEEEEEeCCCChhhhhh-------H
Confidence            36799999999999999999998775443333333333333343321    11  26899999998765332       2


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCccccC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa~  259 (310)
                      ..+++.+|++++|+|++++.+++....|...+..+..  .+.|+++|+||+|+.......+...+....  +.+.++||+
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~  147 (170)
T 1g16_A           70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAK  147 (170)
T ss_dssp             HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECC
Confidence            3456789999999999988778787888888776542  368999999999995432222222222333  345669999


Q ss_pred             ccCCHHHHHHHHhhcc
Q 021615          260 TELSSEDAVKSLSTEG  275 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~  275 (310)
                      ++.|++++|..+....
T Consensus       148 ~~~gv~~l~~~l~~~~  163 (170)
T 1g16_A          148 NDDNVNEIFFTLAKLI  163 (170)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999987654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.86  E-value=1.9e-22  Score=168.61  Aligned_cols=159  Identities=20%  Similarity=0.210  Sum_probs=111.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH-HH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL-GR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l-~~  179 (310)
                      ..+|+++|.+|||||||+|+|++.... +.+++++|.+.....+..+.        ..+.+|||||+.+....-..+ ..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~   75 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--------MPLHIIDTAGLREASDEVERIGIE   75 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--------EEEEEEECCCCSCCSSHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--------eEEEEEECCCcccchhHHHHHHHH
Confidence            357999999999999999999988754 47788888776666665432        268999999997642211111 11


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccC
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSE  259 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~  259 (310)
                      ..+.+++.+|++++|+|+++..+++. ..|+.++.....  .+.|+++|+||+|+.+.....   .+ .....+.++||+
T Consensus        76 ~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~---~~-~~~~~~~~~SA~  148 (172)
T 2gj8_A           76 RAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLP--AKLPITVVRNKADITGETLGM---SE-VNGHALIRLSAR  148 (172)
T ss_dssp             HHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSC--TTCCEEEEEECHHHHCCCCEE---EE-ETTEEEEECCTT
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcc--cCCCEEEEEECccCCcchhhh---hh-ccCCceEEEeCC
Confidence            22356789999999999998776654 345566655432  368999999999985431100   00 012345679999


Q ss_pred             ccCCHHHHHHHHhhcc
Q 021615          260 TELSSEDAVKSLSTEG  275 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~  275 (310)
                      ++.|++++|..+....
T Consensus       149 ~g~gv~~l~~~l~~~~  164 (172)
T 2gj8_A          149 TGEGVDVLRNHLKQSM  164 (172)
T ss_dssp             TCTTHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999987655

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.86  E-value=4.2e-21  Score=162.69  Aligned_cols=164  Identities=15%  Similarity=0.069  Sum_probs=110.4

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC------------------------------
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL------------------------------  150 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~------------------------------  150 (310)
                      ..++|+++|.+|||||||+++|++........+.++.......+......                              
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN   85 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence            34689999999999999999999886432222222222222223222100                              


Q ss_pred             -CCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEE
Q 021615          151 -GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL  229 (310)
Q Consensus       151 -~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~  229 (310)
                       ........+.+|||||+.+...       ....+++.+|++++|+|++++.+++....|..++..+.    ..|+++|+
T Consensus        86 ~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~piilv~  154 (208)
T 3clv_A           86 YNENLCNIKFDIWDTAGQERYAS-------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS----NYIIILVA  154 (208)
T ss_dssp             CCTTTCEEEEEEEECTTGGGCTT-------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CCEEEEEE
T ss_pred             ccCccceeEEEEEECCCcHHHHH-------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC----CCcEEEEE
Confidence             0000003789999999876532       23455679999999999999888888888888887653    48999999


Q ss_pred             eCCCCCCcHhHHHHHHHHHHhcC--CCccccCccCCHHHHHHHHhhcc
Q 021615          230 NKIDLPEARDRLQSLTEEILKIG--CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       230 NK~Dl~~~~~~~~~l~~~l~~~g--~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+|........+++.+.+...+  +.++||+++.|++++|..+....
T Consensus       155 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  202 (208)
T 3clv_A          155 NKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI  202 (208)
T ss_dssp             ECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             ECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence            99994322223445555555554  45589999999999999986544

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.86  E-value=3.8e-21  Score=158.12  Aligned_cols=158  Identities=15%  Similarity=0.135  Sum_probs=107.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||+++|++.... ..+..|+.......+....    ..  ..+.+|||||+.+..    .+.   .
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~l~D~~G~~~~~----~~~---~   69 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDC----QQ--CMLEILDTAGTEQFT----AMR---D   69 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEESSS----CE--EEEEEEEECSSCSST----THH---H
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEEEEEECC----EE--EEEEEEECCChHHHH----HHH---H
Confidence            57999999999999999999986532 2233333222222222221    11  268999999987653    222   3


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHH---hcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL---KIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~---~~g~~~~sa  258 (310)
                      .+++.+|++++|+|++++.+++....|...+..+.. ..+.|+++|+||+|+.+.... .+...+...   ...+.++||
T Consensus        70 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (167)
T 1c1y_A           70 LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA  148 (167)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecC
Confidence            445689999999999988777777777777765421 147899999999999753211 222333333   334666999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|+++++..+....
T Consensus       149 ~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          149 KSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999986643

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.86  E-value=1.8e-21  Score=162.22  Aligned_cols=160  Identities=14%  Similarity=0.063  Sum_probs=113.7

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ...++|+++|.+|||||||+++|++........+.++.+.....+.....      ...+.+|||||..+....      
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~~~~------   74 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE------KVKLQIWDTAGQERFRTI------   74 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTE------EEEEEEEEETTGGGCSSC------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCE------EEEEEEEcCCCchhhhhh------
Confidence            34578999999999999999999988755555555555544444443221      126899999998665332      


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHH--hcCCCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEIL--KIGCDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~--~~g~~~~  256 (310)
                       +..++..+|++++|+|++++.+++....|..++....   .+.|+++|+||+|+.+... ..........  ...+.++
T Consensus        75 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  150 (181)
T 3tw8_B           75 -TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFET  150 (181)
T ss_dssp             -CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred             -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEE
Confidence             2245678999999999999888888888888887654   3689999999999875321 1122222223  2455669


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      |++++.|++++|..+....
T Consensus       151 Sa~~~~gi~~l~~~l~~~~  169 (181)
T 3tw8_B          151 SAKENVNVEEMFNCITELV  169 (181)
T ss_dssp             BTTTTBSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            9999999999999987655

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.86  E-value=1.1e-21  Score=161.65  Aligned_cols=157  Identities=17%  Similarity=0.136  Sum_probs=97.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..+|+++|.+|||||||+|+|++..... .+.+++|..... .+...        ...+.+|||||+.++..       .
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~i~D~~g~~~~~~-------~   65 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDGE--------EASLMVYDIWEQDGGRW-------L   65 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EETTE--------EEEEEEEECC---------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECCE--------EEEEEEEECCCCccchh-------h
Confidence            4689999999999999999999876543 455555553221 12111        12689999999876522       2


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~s  257 (310)
                      ...+++.+|++++|+|++++.+++....|+.++..+.. ..+.|+++|+||+|+.+..+. .+.........  .+.++|
T Consensus        66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  144 (166)
T 3q72_A           66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETS  144 (166)
T ss_dssp             -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECB
T ss_pred             hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEec
Confidence            22345689999999999998888888888888876532 246899999999999754321 12222222333  455699


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |+++.|++++|..+....
T Consensus       145 a~~~~gi~~l~~~l~~~~  162 (166)
T 3q72_A          145 AALHHNVQALFEGVVRQI  162 (166)
T ss_dssp             GGGTBSHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHH
Confidence            999999999999987654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.86  E-value=6.9e-22  Score=190.85  Aligned_cols=158  Identities=23%  Similarity=0.270  Sum_probs=119.0

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCC-ccccCCchHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI-EGAHLGKGLG  178 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~-~~~~~~~~l~  178 (310)
                      ..++|+|+|.||||||||+|+|++.+. .++++++||.++....+.....        .+.+|||||+. +.....+.++
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--------~~~l~DTaG~~~~~~~~ve~~g  313 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--------LFRIVDTAGVRSETNDLVERLG  313 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--------EEEEEESSCCCSSCCTTCCCCC
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--------EEEEEECCCccccchhhHHHHH
Confidence            448999999999999999999999874 4699999999998888876532        79999999998 6644333222


Q ss_pred             -HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-cCCCcc
Q 021615          179 -RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-IGCDKV  256 (310)
Q Consensus       179 -~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-~g~~~~  256 (310)
                       ...+.+++.||++++|+|++++.+.++.+. ++.+       .++|+++|+||+|+....+ .+++.+.+.. ..+..+
T Consensus       314 i~~~~~~~~~aD~vl~VvD~s~~~s~~~~~i-l~~l-------~~~piivV~NK~DL~~~~~-~~~~~~~~~~~~~~i~i  384 (482)
T 1xzp_A          314 IERTLQEIEKADIVLFVLDASSPLDEEDRKI-LERI-------KNKRYLVVINKVDVVEKIN-EEEIKNKLGTDRHMVKI  384 (482)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTSCCCHHHHHH-HHHH-------TTSSEEEEEEECSSCCCCC-HHHHHHHHTCSTTEEEE
T ss_pred             HHHHHHHhhcccEEEEEecCCCCCCHHHHHH-HHHh-------cCCCEEEEEECcccccccC-HHHHHHHhcCCCcEEEE
Confidence             234577889999999999998877766543 3333       2689999999999975422 2333333221 245679


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|++++++.+....
T Consensus       385 SAktg~Gi~eL~~~l~~~~  403 (482)
T 1xzp_A          385 SALKGEGLEKLEESIYRET  403 (482)
T ss_dssp             EGGGTCCHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            9999999999999987654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.86  E-value=5.6e-21  Score=159.49  Aligned_cols=161  Identities=15%  Similarity=0.055  Sum_probs=111.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++........+..+.......+....    .  ...+.+|||||+.+...       .+
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~~-------~~   78 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVND----A--TVKFEIWDTAGQERYHS-------LA   78 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETT----E--EEEEEEEECCCSGGGGG-------GT
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECC----E--EEEEEEEeCCCChhhhh-------hh
Confidence            46899999999999999999998764432222222111112222111    1  12789999999865532       22


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~sa  258 (310)
                      ..+++.+|++++|+|++++.+++....|..++..+..  .+.|+++|+||+|+.+..+ ..++..+.....+  +.++|+
T Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  156 (181)
T 2efe_B           79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSA  156 (181)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCS
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEEC
Confidence            3456789999999999988888888888888876542  3689999999999975322 1233444444444  556899


Q ss_pred             CccCCHHHHHHHHhhccCC
Q 021615          259 ETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~~~  277 (310)
                      +++.|+.++|..+......
T Consensus       157 ~~g~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          157 KTATNVKEIFYEIARRLPR  175 (181)
T ss_dssp             SSCTTHHHHHHHHHHTCC-
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999876643

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.86  E-value=1.3e-21  Score=170.14  Aligned_cols=157  Identities=16%  Similarity=0.160  Sum_probs=108.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeecc--ceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN--LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~--~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      +||+|||.+|||||||+++++...... .+. .|....  ...+...    ...  -.+.||||+|+.++.    .+.. 
T Consensus        14 ~KivlvGd~~VGKTsLi~r~~~~~f~~-~~~-~Tig~d~~~k~~~~~----~~~--v~l~iwDtaGqe~~~----~l~~-   80 (216)
T 4dkx_A           14 FKLVFLGEQSVGKTSLITRFMYDSFDN-TYQ-ATIGIDFLSKTMYLE----DRT--IRLQLWDTAGLERFR----SLIP-   80 (216)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECS----SCE--EEEEEECCSCTTTCG----GGHH-
T ss_pred             EEEEEECcCCcCHHHHHHHHHhCCCCC-CcC-CccceEEEEEEEEec----ceE--EEEEEEECCCchhhh----hHHH-
Confidence            589999999999999999999765321 111 122111  1122211    111  268999999998773    3333 


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV  256 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~  256 (310)
                        .+++.++++++|+|.++..+++.+..|+..+..+..  .+.|+++|+||+|+.+..    +..+.+.+.+ .+.+.++
T Consensus        81 --~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~--~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~-~~~~~e~  155 (216)
T 4dkx_A           81 --SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLADKRQVSIEEGERKAKEL-NVMFIET  155 (216)
T ss_dssp             --HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEEE
T ss_pred             --HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC--CCCeEEEEeeccchHhcCcccHHHHhhHHHHh-CCeeEEE
Confidence              345689999999999999999999999998876643  468999999999997532    2233343333 2346679


Q ss_pred             ccCccCCHHHHHHHHhhccCC
Q 021615          257 TSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      ||+++.|++++|..++.....
T Consensus       156 SAktg~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          156 SAKAGYNVKQLFRRVAAALPG  176 (216)
T ss_dssp             BTTTTBSHHHHHHHHHHHC--
T ss_pred             eCCCCcCHHHHHHHHHHHHHh
Confidence            999999999999999877643

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.85  E-value=6.1e-21  Score=160.20  Aligned_cols=160  Identities=19%  Similarity=0.183  Sum_probs=110.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+|+|++... ...++.|+.......+....    ..  ..+.+|||||+.+...    +.   
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~----~~---   69 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDG----ET--CLLDILDTAGQEEYSA----MR---   69 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETT----EE--EEEEEEECCCC---CT----TH---
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECC----cE--EEEEEEECCCcHHHHH----HH---
Confidence            35799999999999999999998763 34444555433333333221    11  1578899999876532    22   


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCccccC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa~  259 (310)
                      ..++..+|++++|+|+++..+++....|...+..+... .+.|+++|+||+|+.......+........  ..+.++||+
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~  148 (189)
T 4dsu_A           70 DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAK  148 (189)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence            23456899999999999988888888888887765322 368999999999997543222333333333  455669999


Q ss_pred             ccCCHHHHHHHHhhccC
Q 021615          260 TELSSEDAVKSLSTEGG  276 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~~  276 (310)
                      ++.|+.++|..+.....
T Consensus       149 ~g~gi~~l~~~l~~~~~  165 (189)
T 4dsu_A          149 TRQGVDDAFYTLVREIR  165 (189)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999877653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.85  E-value=1.8e-21  Score=160.46  Aligned_cols=157  Identities=17%  Similarity=0.118  Sum_probs=109.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ..+|+++|.+|||||||+|+|++.....  .+..+++.......+...        ...+.+|||||+.+...       
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Dt~G~~~~~~-------   70 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNE--------LHKFLIWDTAGLERFRA-------   70 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE--------EEEEEEEEECCSGGGGG-------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCe--------EEEEEEEcCCCchhhhc-------
Confidence            4689999999999999999999886432  333333332222222111        12689999999865422       


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~  256 (310)
                      ....+++.+|++++|+|++++.+++....|...+..+..  ...|+++|+||+|+.+..+. .+.........  .+.++
T Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  148 (170)
T 1z0j_A           71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVET  148 (170)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred             ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEE
Confidence            223456789999999999998888888888888877533  46899999999999753221 22223333333  35568


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      |++++.|+++++..+....
T Consensus       149 Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          149 SAKNAININELFIEISRRI  167 (170)
T ss_dssp             BTTTTBSHHHHHHHHHHHC
T ss_pred             eCCCCcCHHHHHHHHHHHH
Confidence            9999999999999987654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.85  E-value=2.9e-21  Score=165.74  Aligned_cols=162  Identities=15%  Similarity=0.076  Sum_probs=111.8

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      ....++|+++|.+|||||||+++|++........+.++.+.....+....    ..  ..+.+|||||+.+....     
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~~-----   85 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING----KK--VKLQLWDTAGQERFRTI-----   85 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETT----EE--EEEEEECCTTGGGGTCC-----
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECC----EE--EEEEEEeCCCcHHHHHH-----
Confidence            34567899999999999999999998775444444444333333333221    01  26899999998765321     


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCcc
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKV  256 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~  256 (310)
                        +..++..+|++++|+|++++.+++....|..++..+..  .+.|+++|+||+|+.......+...+....  +.+.++
T Consensus        86 --~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (213)
T 3cph_A           86 --TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIES  161 (213)
T ss_dssp             --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEEC
T ss_pred             --HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEE
Confidence              23556789999999999988778877788888776543  368999999999995432112222222232  456669


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      |++++.|+.++|..+....
T Consensus       162 Sa~~~~gi~~l~~~l~~~~  180 (213)
T 3cph_A          162 SAKNDDNVNEIFFTLAKLI  180 (213)
T ss_dssp             BTTTTBSSHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999999987654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.85  E-value=2.4e-21  Score=159.56  Aligned_cols=158  Identities=15%  Similarity=0.056  Sum_probs=109.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||+++|++........+..+.......+....    .  ...+.+|||||+.+...       .+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~D~~G~~~~~~-------~~~   70 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE----H--TVKFEIWDTAGQERFAS-------LAP   70 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT----E--EEEEEEEEECCSGGGGG-------GHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC----E--EEEEEEEECCCChhhhh-------hhh
Confidence            5799999999999999999998764433233333222222222211    1  12689999999865422       234


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc---HhH-HHHHHHHHHh--cCCCcc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA---RDR-LQSLTEEILK--IGCDKV  256 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~---~~~-~~~l~~~l~~--~g~~~~  256 (310)
                      .+++.+|++++|+|++++.+++....|..++.....  .+.|+++|+||+|+...   .+. .+...+....  ..+.++
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~  148 (170)
T 1ek0_A           71 XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFET  148 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEEC
T ss_pred             hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEE
Confidence            556789999999999998888888888877776542  46899999999998643   111 1222222223  345669


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|+.++|..+....
T Consensus       149 Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          149 SAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             CTTTCTTHHHHHHHHHTTS
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999999987655

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=3.3e-21  Score=163.46  Aligned_cols=160  Identities=18%  Similarity=0.162  Sum_probs=114.2

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCC--CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~--i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      ....+|+++|.+|||||||+++|++....  ..+..+++.......+...        ...+.+|||||+.+...     
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~~-----   87 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNE--------LHKFLIWDTAGQERFHS-----   87 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSS--------EEEEEEEEECCSGGGGG-----
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCE--------EEEEEEEcCCCchhhHh-----
Confidence            34578999999999999999999987642  2334444433222222111        12789999999866532     


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CC
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CD  254 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~  254 (310)
                        .+..+++.+|++++|+|+++..+++....|..++..+..  .+.|+++|+||+|+.+..+ ..++..+.....+  +.
T Consensus        88 --~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~  163 (192)
T 2fg5_A           88 --LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVV  163 (192)
T ss_dssp             --GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEE
T ss_pred             --hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence              223456789999999999998888888888888877642  4689999999999964221 2334444444444  45


Q ss_pred             ccccCccCCHHHHHHHHhhccC
Q 021615          255 KVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      ++|++++.|+++++..+.....
T Consensus       164 ~~Sa~~~~gi~~l~~~l~~~i~  185 (192)
T 2fg5_A          164 ETSAKNAINIEELFQGISRQIP  185 (192)
T ss_dssp             ECBTTTTBSHHHHHHHHHHTCC
T ss_pred             EEeCCCCcCHHHHHHHHHHHHH
Confidence            5899999999999999987663

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.85  E-value=7.6e-22  Score=168.22  Aligned_cols=161  Identities=19%  Similarity=0.162  Sum_probs=106.4

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      ......+|+++|.+|||||||+++|++.. ....+..|+.......+..+.    ..  ..+.+|||||+.+....    
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~~----   84 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDG----RP--VRLQLCDTAGQDEFDKL----   84 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETT----EE--EEEEEEECCCSTTCSSS----
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECC----EE--EEEEEEECCCCHHHHHH----
Confidence            33456789999999999999999999876 234444554433333332221    11  15789999999776432    


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----------------hH
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DR  240 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----------------~~  240 (310)
                         +..++..+|++++|+|++++.+++... .|..++..+.+   +.|+++|+||+|+....                +.
T Consensus        85 ---~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~  158 (201)
T 2q3h_A           85 ---RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA  158 (201)
T ss_dssp             ---GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred             ---hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence               123567899999999999988888775 67777776543   78999999999997531                11


Q ss_pred             HHHHHHHHHhcCCCccccCccCCHHHHHHHHhhcc
Q 021615          241 LQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       241 ~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ...+.+.+....+.++||+++.|++++|..+....
T Consensus       159 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  193 (201)
T 2q3h_A          159 AKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG  193 (201)
T ss_dssp             HHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence            22233222222456799999999999999987655

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.85  E-value=4.6e-22  Score=177.41  Aligned_cols=154  Identities=22%  Similarity=0.287  Sum_probs=113.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc------CCch
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH------LGKG  176 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~------~~~~  176 (310)
                      ++|+++|.+|||||||+|+|++....++++|++|.+...+.+....        ..+.+|||||+.+...      ..+.
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--------~~~~lvDtpG~~~~~~~~~~~~~~e~   73 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--------HLIEITDLPGVYSLVANAEGISQDEQ   73 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--------EEEEEEECCCCSSCC------CHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--------eEEEEEeCCCcccccccccCCCHHHH
Confidence            6899999999999999999999987778999999888888776543        2789999999977642      1122


Q ss_pred             HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH---hHHHHHHHHHHhcCC
Q 021615          177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGC  253 (310)
Q Consensus       177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~~~l~~~l~~~g~  253 (310)
                      +.+.++. .+.+|++++|+|+++.   +....+...+..     .+.|+++|+||+|+....   ...+.+.+.+ ...+
T Consensus        74 i~~~~~~-~~~~d~vi~VvDas~~---~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~v  143 (256)
T 3iby_A           74 IAAQSVI-DLEYDCIINVIDACHL---ERHLYLTSQLFE-----LGKPVVVALNMMDIAEHRGISIDTEKLESLL-GCSV  143 (256)
T ss_dssp             HHHHHHH-HSCCSEEEEEEEGGGH---HHHHHHHHHHTT-----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH-CSCE
T ss_pred             HHHHHHh-hCCCCEEEEEeeCCCc---hhHHHHHHHHHH-----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc-CCCE
Confidence            3333332 1689999999999873   333344455544     378999999999986432   1233444433 2455


Q ss_pred             CccccCccCCHHHHHHHHhhc
Q 021615          254 DKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~  274 (310)
                      .++||+++.|++++++.+...
T Consensus       144 i~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          144 IPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             EECBGGGTBSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            669999999999999999776

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.85  E-value=1.4e-21  Score=165.98  Aligned_cols=160  Identities=14%  Similarity=0.106  Sum_probs=107.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|||||||+++|++........+..+.+.....+....    ..  ..+.+|||||+.+.       ...
T Consensus        25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~l~l~Dt~G~~~~-------~~~   91 (192)
T 2il1_A           25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG----KK--IRLQIWDTAGQERF-------NSI   91 (192)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETT----EE--EEEEEEEECCSGGG-------HHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECC----eE--EEEEEEeCCCcHHH-------HHH
Confidence            346899999999999999999998764433333333333333333221    11  26899999998654       223


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHH---hcCCCcc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL---KIGCDKV  256 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~---~~g~~~~  256 (310)
                      +..+++.+|++++|+|+++..++++...|...+..+..  .+.|+++|+||+|+....+. .++..+...   ...+.++
T Consensus        92 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~  169 (192)
T 2il1_A           92 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEA  169 (192)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEEC
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEE
Confidence            44566789999999999998888888888888876643  46899999999999653221 122222222   2345669


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|++++|..+....
T Consensus       170 SA~~g~gi~~l~~~l~~~i  188 (192)
T 2il1_A          170 SAKDNFNVDEIFLKLVDDI  188 (192)
T ss_dssp             BTTTTBSHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999999986543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=6.1e-21  Score=161.18  Aligned_cols=162  Identities=16%  Similarity=0.050  Sum_probs=112.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++........+..+.......+....    .  ...+.+|||||+.+...       .+
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~~-------~~   81 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG----N--KAKLAIWDTAGQERFRT-------LT   81 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT----E--EEEEEEEEECSSGGGCC-------SH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECC----e--EEEEEEEeCCCchhhhh-------hh
Confidence            46899999999999999999998764433233222222222232211    1  12689999999876532       22


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC--CCccccC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTSE  259 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g--~~~~sa~  259 (310)
                      ..+++.+|++++|+|++++.++.....|..++..+.. ..+.|+++|+||+|+.......+...+.....+  +.++|++
T Consensus        82 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (195)
T 1x3s_A           82 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAK  160 (195)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCC
Confidence            3456789999999999988888888888888776532 236899999999999643222233344444444  4568999


Q ss_pred             ccCCHHHHHHHHhhccCC
Q 021615          260 TELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~~~  277 (310)
                      ++.|++++|..+.....+
T Consensus       161 ~~~gi~~l~~~l~~~~~~  178 (195)
T 1x3s_A          161 TCDGVQCAFEELVEKIIQ  178 (195)
T ss_dssp             TCTTHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999998776543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.85  E-value=5.3e-21  Score=157.51  Aligned_cols=157  Identities=15%  Similarity=0.088  Sum_probs=108.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCC--CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIA--DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~--~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ..+|+++|.+|||||||+++|++......  +..+++.......+...        ...+.+|||||+.+...       
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~D~~G~~~~~~-------   70 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDT--------TVKFEIWDTAGQERYHS-------   70 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE--------EEEEEEEEECCSGGGGG-------
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCE--------EEEEEEEeCCCcHHhhh-------
Confidence            36799999999999999999998764321  22222222211112111        12689999999866422       


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~  256 (310)
                      .+..++..+|++++|+|++++.+++....|..++..+..  ...|+++|+||+|+..... ..++..+.....+  +.++
T Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  148 (170)
T 1r2q_A           71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMET  148 (170)
T ss_dssp             GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred             hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEE
Confidence            234456789999999999988888888888877776532  3689999999999864321 1233333344444  4568


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|++++++.+....
T Consensus       149 Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          149 SAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             CTTTCTTHHHHHHHHHHTS
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999999987665

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.85  E-value=6.6e-21  Score=158.43  Aligned_cols=160  Identities=17%  Similarity=0.068  Sum_probs=110.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..++|+++|.+|||||||+++|++........+.++.......+....    .  ...+.+|||||+.+..    .   .
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~l~Dt~G~~~~~----~---~   80 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG----Q--KIKLQIWDTAGQERFR----A---V   80 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETT----E--EEEEEEEECTTGGGTC----H---H
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC----e--EEEEEEEECCCChHhh----h---h
Confidence            347899999999999999999998764322111111111112222111    1  1268999999986542    2   3


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~s  257 (310)
                      +..+++.+|++++|+|+++..+++....|..++..+..  .+.|+++|+||+|+....+ ..++..+.....+  +.++|
T Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (179)
T 1z0f_A           81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEAS  158 (179)
T ss_dssp             HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred             HHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence            34556789999999999998888888888888876543  3689999999999964321 1234444444444  55689


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |+++.|++++|..+....
T Consensus       159 a~~~~gi~~l~~~l~~~i  176 (179)
T 1z0f_A          159 AKTGENVEDAFLEAAKKI  176 (179)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999987654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.85  E-value=5e-21  Score=165.77  Aligned_cols=163  Identities=20%  Similarity=0.183  Sum_probs=114.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCC-C-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC----
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAK-P-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----  174 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~-~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~----  174 (310)
                      ..++|+++|.+|||||||+|+|++.. . .+.+++++|.......+....       ...+.+|||||+.+.....    
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~l~DtpG~~~~~~~~~~~~  100 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA-------EPVAHLVDLPGYGYAEVPGAAKA  100 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT-------SCSEEEEECCCCCSSCCCSTHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC-------CCcEEEEcCCCCCcccCChhhHH
Confidence            35789999999999999999999986 2 457888888876655554111       1279999999986542221    


Q ss_pred             --chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHH
Q 021615          175 --KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEIL  249 (310)
Q Consensus       175 --~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~  249 (310)
                        ..+...+++....+|++++|+|+++.....+ ..+...+..     .++|+++|+||+|+....+   ..+.+.+.+.
T Consensus       101 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~  174 (223)
T 4dhe_A          101 HWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP-----TGKPIHSLLTKCDKLTRQESINALRATQKSLD  174 (223)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG-----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh-----cCCCEEEEEeccccCChhhHHHHHHHHHHHHH
Confidence              1223344444555899999999987655443 345556654     3689999999999987544   2334444444


Q ss_pred             hc---------CCCccccCccCCHHHHHHHHhhccC
Q 021615          250 KI---------GCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       250 ~~---------g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      .+         .+..+||+++.|+.+++..+.....
T Consensus       175 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~  210 (223)
T 4dhe_A          175 AYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR  210 (223)
T ss_dssp             HHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred             hhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence            42         3556899999999999999876653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.85  E-value=3.6e-21  Score=159.62  Aligned_cols=160  Identities=15%  Similarity=0.104  Sum_probs=101.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .++|+++|.+|||||||+++|++..... .+.++++.......+...      .  ..+.+|||||+....  ...+.  
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~D~~g~~~~~--~~~~~--   71 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGE------D--TTLVVVDTWEAEKLD--KSWSQ--   71 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTE------E--EEEEEECCC---------CHHH--
T ss_pred             EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCE------E--EEEEEEecCCCCccc--hhhhH--
Confidence            4689999999999999999999886443 333333332222222111      1  168999999986531  11122  


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~s  257 (310)
                       ..+++.+|++++|+|++++.+++....|+.++..+.. ..+.|+++|+||+|+.+..+. .++.......  ..+.++|
T Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  149 (175)
T 2nzj_A           72 -ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETS  149 (175)
T ss_dssp             -HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECB
T ss_pred             -HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEe
Confidence             2345679999999999998888888888888876532 236899999999999754221 1222222222  3466799


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |+++.|++++|..+....
T Consensus       150 a~~g~gi~~l~~~l~~~~  167 (175)
T 2nzj_A          150 ATLQHNVAELFEGVVRQL  167 (175)
T ss_dssp             TTTTBSHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHH
Confidence            999999999999987654

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.85  E-value=4.8e-21  Score=172.29  Aligned_cols=156  Identities=20%  Similarity=0.353  Sum_probs=114.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC--CchHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~--~~~l~~  179 (310)
                      .++|+++|.||||||||+|+|++....++++|++|.....+.+.. .        ..+.+|||||+.+....  .+.+.+
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~--------~~l~l~DtpG~~~~~~~~~~e~v~~   73 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-N--------KDLEIQDLPGIYSMSPYSPEAKVAR   73 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-C--------TTEEEEECCCCSCSSCSSHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-C--------CeEEEEECCCcCccCCCChHHHHHH
Confidence            357999999999999999999998877899999999887777653 2        27999999999765321  123344


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH---hHHHHHHHHHHhcCCCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGCDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~~~l~~~l~~~g~~~~  256 (310)
                      .++.. ..+|++++|+|+++.   +....|..++..     .+.|+++|+||+|+....   ...+.+.+.+ .+.+.++
T Consensus        74 ~~~~~-~~~d~vi~V~D~t~~---e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~vi~~  143 (272)
T 3b1v_A           74 DYLLS-QRADSILNVVDATNL---ERNLYLTTQLIE-----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL-GVPVVAT  143 (272)
T ss_dssp             HHHHT-TCCSEEEEEEEGGGH---HHHHHHHHHHHH-----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEEC
T ss_pred             HHHhc-CCCCEEEEEecCCch---HhHHHHHHHHHh-----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc-CCCEEEE
Confidence            44332 369999999999863   333445556654     378999999999985321   1234444433 2456669


Q ss_pred             ccCccCCHHHHHHHHhhccC
Q 021615          257 TSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~~  276 (310)
                      ||+++.|++++|..+.....
T Consensus       144 SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          144 SALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             BTTTTBSHHHHHHHHHHSCT
T ss_pred             EccCCCCHHHHHHHHHHHHh
Confidence            99999999999999877553

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.85  E-value=2.5e-21  Score=168.99  Aligned_cols=164  Identities=18%  Similarity=0.252  Sum_probs=108.6

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc-hH-HH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GL-GR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~-~l-~~  179 (310)
                      .++|+|+|.+|||||||+|+|++......+++++|.......+....        ..+.+|||||+.+...... .+ ..
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~DtpG~~~~~~~~~~~~~~~  100 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--------NKYQIIDTPGLLDRAFENRNTIEMT  100 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--------EEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--------CeEEEEECCCCcCcccchhhhHHHH
Confidence            46899999999999999999999876556778888876666554332        2789999999976432212 11 12


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHH--HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH----HHHHHHHHHh---
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVN--DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----LQSLTEEILK---  250 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~--~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~----~~~l~~~l~~---  250 (310)
                      .+......+|++++|+|+++..+++  ....+...+....   .+.|+++|+||+|+....+.    .+.+.+....   
T Consensus       101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
T 2qu8_A          101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF---SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN  177 (228)
T ss_dssp             HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred             HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh---cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence            2223356789999999999876543  2234555555431   37899999999999764321    1223333333   


Q ss_pred             -cCCCccccCccCCHHHHHHHHhhccC
Q 021615          251 -IGCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       251 -~g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                       ..+.++||+++.|++++|..++....
T Consensus       178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~  204 (228)
T 2qu8_A          178 PIKFSSFSTLTGVGVEQAKITACELLK  204 (228)
T ss_dssp             CEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CceEEEEecccCCCHHHHHHHHHHHHH
Confidence             34667999999999999999877653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.85  E-value=2.1e-21  Score=160.32  Aligned_cols=161  Identities=19%  Similarity=0.133  Sum_probs=102.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .++|+++|.+|||||||+++|++........+.+|.+.....+..+.    ..  ..+.+|||||+.+....   +.   
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~i~D~~g~~~~~~~---~~---   69 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDK----EE--VTLIVYDIWEQGDAGGW---LQ---   69 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETT----EE--EEEEEECCCCC--------------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECC----eE--EEEEEEECCCccccchh---hh---
Confidence            36899999999999999999997764443333344433333333221    11  26889999999764220   11   


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~sa  258 (310)
                      ..+++.+|++++|+|++++.+++....|+.++...... .+.|+++|+||+|+.+..+ ..+...+.....  .+.++||
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (169)
T 3q85_A           70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA  148 (169)
T ss_dssp             CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecC
Confidence            12345799999999999988888888888887765421 2689999999999974322 122333333334  4466999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|..+....
T Consensus       149 ~~~~~v~~l~~~l~~~i  165 (169)
T 3q85_A          149 ALHHNTRELFEGAVRQI  165 (169)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHH
Confidence            99999999999987644

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=3.5e-21  Score=160.61  Aligned_cols=159  Identities=19%  Similarity=0.172  Sum_probs=108.0

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC-CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~-~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ...+|+++|.+|||||||+++|++....... .+.++.......+....    ..  ..+.+|||||+.+...       
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~~~Dt~G~~~~~~-------   75 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDG----VK--VKLQMWDTAGQERFRS-------   75 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETT----EE--EEEEEEECCCC------------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECC----EE--EEEEEEeCCCcHHHHH-------
Confidence            3468999999999999999999988754322 23333332222222211    11  2689999999865422       


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDK  255 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~  255 (310)
                      .+..+++.+|++++|+|++++.+++.+..|..++..+..  .+.|+++|+||+|+....    +....+.+.+ .+.+.+
T Consensus        76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~  152 (180)
T 2g6b_A           76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKREDGEKLAKEY-GLPFME  152 (180)
T ss_dssp             ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-TCCEEE
T ss_pred             HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccCHHHHHHHHHHc-CCeEEE
Confidence            234556889999999999988888888888888876543  468999999999997532    1222332222 345666


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +||+++.|++++|..+....
T Consensus       153 ~Sa~~~~gi~~l~~~l~~~~  172 (180)
T 2g6b_A          153 TSAKTGLNVDLAFTAIAKEL  172 (180)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999987655

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.85  E-value=6.3e-21  Score=158.63  Aligned_cols=161  Identities=16%  Similarity=0.091  Sum_probs=109.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .++|+++|.+|||||||+++|++........+.++.......+....    ..  ..+.+|||||+.+.       ....
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~-------~~~~   73 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG----HF--VTMQIWDTAGQERF-------RSLR   73 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETT----EE--EEEEEEECCCCGGG-------HHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECC----EE--EEEEEEeCCCchhh-------hhhH
Confidence            46899999999999999999998764433333333332223332221    11  16899999998654       2233


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH---hcCCCcc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDKV  256 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~---~~g~~~~  256 (310)
                      ..+++.+|++++|+|+++..+++....|..++..+..  ...+.|+++|+||+|+.......+...+...   ...+.++
T Consensus        74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  153 (177)
T 1wms_A           74 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFET  153 (177)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEEC
T ss_pred             HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEE
Confidence            4557789999999999998888877778777765432  1146899999999999743222233333333   3456679


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      |++++.|++++|..+....
T Consensus       154 Sa~~~~gi~~l~~~l~~~~  172 (177)
T 1wms_A          154 SAKDATNVAAAFEEAVRRV  172 (177)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999999987654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.85  E-value=4.2e-21  Score=160.04  Aligned_cols=163  Identities=15%  Similarity=0.143  Sum_probs=105.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..++|+++|.+|||||||+++|++........+.++.+.....+....   ..  ...+.+|||||+.+...       .
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~l~Dt~G~~~~~~-------~   74 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG---DK--VATMQVWDTAGQERFQS-------L   74 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSS---SC--CEEEEEECCC---------------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcC---Cc--EEEEEEEECCCChHhhh-------h
Confidence            346899999999999999999998764433333333333333343221   01  12689999999765422       2


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcH-----hHHHHHHHHHHhcCC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEAR-----DRLQSLTEEILKIGC  253 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~~-----~~~~~l~~~l~~~g~  253 (310)
                      +..+++.+|++++|+|++++.+++....|..++..+..  ...+.|+++|+||+|+....     +....+.+......+
T Consensus        75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~  154 (182)
T 1ky3_A           75 GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL  154 (182)
T ss_dssp             --CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE
T ss_pred             hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeE
Confidence            33456789999999999998888888778777765431  12468999999999996432     222333322223456


Q ss_pred             CccccCccCCHHHHHHHHhhcc
Q 021615          254 DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .++|++++.|++++|..+....
T Consensus       155 ~~~Sa~~~~gi~~l~~~l~~~~  176 (182)
T 1ky3_A          155 FLTSAKNAINVDTAFEEIARSA  176 (182)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHH
Confidence            6799999999999999987654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.85  E-value=6.5e-21  Score=163.18  Aligned_cols=163  Identities=15%  Similarity=0.083  Sum_probs=110.8

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      .....++|+++|.+|||||||+++|++........+..+.+.....+....    ..  ..+.+|||||+.+.       
T Consensus        25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~-------   91 (201)
T 2hup_A           25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQG----KR--VKLQIWDTAGQERF-------   91 (201)
T ss_dssp             -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETT----EE--EEEEEECCTTCGGG-------
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECC----EE--EEEEEEECCCcHhH-------
Confidence            345568899999999999999999998764322111111222222232221    11  27899999998654       


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcCC---
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIGC---  253 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g~---  253 (310)
                      ...+..+++.+|++++|+|+++..+++....|..++..+..  .+.|+++|+||+|+..... ..++..+.....++   
T Consensus        92 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~  169 (201)
T 2hup_A           92 RTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCA  169 (201)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEE
Confidence            22344567799999999999988888888888888876542  4689999999999975311 12334444455554   


Q ss_pred             CccccCccCCHHHHHHHHhhcc
Q 021615          254 DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .++||+++.|++++|..+....
T Consensus       170 ~~~SA~~g~gi~~l~~~l~~~i  191 (201)
T 2hup_A          170 IETSAKDSSNVEEAFLRVATEL  191 (201)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHH
Confidence            5699999999999999987655

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.85  E-value=2.8e-21  Score=186.40  Aligned_cols=165  Identities=20%  Similarity=0.189  Sum_probs=96.8

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      ++...+|+++|.||||||||+|+|++.+.. ++++++||.+.....+.....        .+.+|||||+.+....-..+
T Consensus       230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--------~l~liDT~G~~~~~~~ve~~  301 (476)
T 3gee_A          230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--------MFRLTDTAGLREAGEEIEHE  301 (476)
T ss_dssp             HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--------EEEEEC--------------
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--------EEEEEECCCCCcchhHHHHH
Confidence            456678999999999999999999998654 588999999887777765432        79999999997653321211


Q ss_pred             H-HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-HHHHHHHHhcCCCc
Q 021615          178 G-RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKIGCDK  255 (310)
Q Consensus       178 ~-~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~l~~~l~~~g~~~  255 (310)
                      + +....+++.+|++++|+|++++.+.++...+...+...    .++|+++|+||+|+....... +.+.+. ....+..
T Consensus       302 gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~~~~~i~  376 (476)
T 3gee_A          302 GIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRAANADALIRAIADG-TGTEVIG  376 (476)
T ss_dssp             ------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSCTTTHHHHHHHHHH-HTSCEEE
T ss_pred             HHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCCCccchhHHHHHhc-CCCceEE
Confidence            1 22345678999999999999987775444444444443    268999999999998754321 112221 1145667


Q ss_pred             cccCccCCHHHHHHHHhhccC
Q 021615          256 VTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      +||+++.|++++++.+.....
T Consensus       377 vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          377 ISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             CBTTTTBSHHHHHHHHTHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHh
Confidence            999999999999999876553

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.85  E-value=5.2e-21  Score=159.27  Aligned_cols=152  Identities=21%  Similarity=0.239  Sum_probs=108.2

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..++|+++|.+|||||||+++|++........+.+|.......+....        ..+.+|||||+.+.....      
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~------   72 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--------KKITFLDTPGHEAFTTMR------   72 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--------EEEEESCCCSSSSSSCSC------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--------ceEEEEECCCCHHHHHHH------
Confidence            457899999999999999999999876555566666555444444332        268999999997764321      


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh----------
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK----------  250 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~----------  250 (310)
                       ..++..+|++++|+|+++....+.++.+ ..+..     .+.|+++|+||+|+....  .+.+...+..          
T Consensus        73 -~~~~~~~d~~i~v~d~~~~~~~~~~~~l-~~~~~-----~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  143 (178)
T 2lkc_A           73 -ARGAQVTDIVILVVAADDGVMPQTVEAI-NHAKA-----ANVPIIVAINKMDKPEAN--PDRVMQELMEYNLVPEEWGG  143 (178)
T ss_dssp             -CSSCCCCCEEEEEEETTCCCCHHHHHHH-HHHGG-----GSCCEEEEEETTTSSCSC--HHHHHHHHTTTTCCBTTTTS
T ss_pred             -HHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHh-----CCCCEEEEEECccCCcCC--HHHHHHHHHhcCcChhHcCC
Confidence             2446789999999999886655555443 33332     368999999999998642  1223333322          


Q ss_pred             -cCCCccccCccCCHHHHHHHHhhcc
Q 021615          251 -IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       251 -~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                       ..+.++||+++.|++++|+.+....
T Consensus       144 ~~~~~~~Sa~~~~gv~~l~~~l~~~~  169 (178)
T 2lkc_A          144 DTIFCKLSAKTKEGLDHLLEMILLVS  169 (178)
T ss_dssp             SEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             cccEEEEecCCCCCHHHHHHHHHHhh
Confidence             2355699999999999999987654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.85  E-value=6.7e-21  Score=159.87  Aligned_cols=160  Identities=15%  Similarity=0.040  Sum_probs=114.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|||||||+++|++........+.++.......+....    ..  ..+.+|||||+.+.       ...
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~-------~~~   75 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG----KY--VKLQIWDTAGQERF-------RSV   75 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETT----EE--EEEEEEEECCSGGG-------HHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC----EE--EEEEEEeCCCcHHH-------HHH
Confidence            457899999999999999999998875554444444444333333221    11  26899999998654       223


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~s  257 (310)
                      +..+++.+|++++|+|++++.+++....|..++..+..  .+.|+++|+||+|+....+ ...+..+.....+  +.++|
T Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  153 (186)
T 2bme_A           76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETS  153 (186)
T ss_dssp             HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred             HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEec
Confidence            45567899999999999998888888888887776543  4689999999999964321 1233333334444  55699


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |+++.|+.++|..+....
T Consensus       154 a~~~~gi~~l~~~l~~~~  171 (186)
T 2bme_A          154 ALTGENVEEAFVQCARKI  171 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999987655

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.84  E-value=8.3e-21  Score=162.51  Aligned_cols=161  Identities=16%  Similarity=0.101  Sum_probs=114.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..++|+|+|.+|||||||+++|++........+..+.......+....    ..  ..+.+|||||+.+....       
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~~-------   73 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDG----KT--VKLQIWDTAGQERFRTI-------   73 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETT----EE--EEEEEECCTTTTTTTCC-------
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC----EE--EEEEEEeCCChHHHHHH-------
Confidence            356899999999999999999998875444344444333333333221    11  16899999998765332       


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~s  257 (310)
                      +..+++.+|++++|+|++++.+++....|..++..+..  .+.|+++|+||+|+..... ..+...+.....  .+.++|
T Consensus        74 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (206)
T 2bcg_Y           74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETS  151 (206)
T ss_dssp             CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECC
T ss_pred             HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEe
Confidence            23456789999999999998888888888888876643  3689999999999976322 122233333333  455699


Q ss_pred             cCccCCHHHHHHHHhhccC
Q 021615          258 SETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~~  276 (310)
                      |+++.|++++|..+.....
T Consensus       152 a~~g~gi~~l~~~l~~~i~  170 (206)
T 2bcg_Y          152 ALDSTNVEDAFLTMARQIK  170 (206)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999876553

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.84  E-value=6.8e-21  Score=161.63  Aligned_cols=153  Identities=24%  Similarity=0.251  Sum_probs=109.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++.....  + .+|..+....+..+.        ..+.+|||||+.+....       +
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~--~-~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~~-------~   84 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDRLAT--L-QPTWHPTSEELAIGN--------IKFTTFDLGGHIQARRL-------W   84 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSCCCC--C-CCCCSCEEEEEEETT--------EEEEEEECCCSGGGTTS-------G
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCc--c-ccCCCCCeEEEEECC--------EEEEEEECCCCHHHHHH-------H
Confidence            4589999999999999999999876432  1 234444444554432        27899999999765321       2


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-----------
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-----------  250 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-----------  250 (310)
                      ..+++.+|++++|+|++++.+++....+..++.... ...+.|+++|+||+|+.... ..+++.+.+..           
T Consensus        85 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~  162 (190)
T 1m2o_B           85 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPNAV-SEAELRSALGLLNTTGSQRIEG  162 (190)
T ss_dssp             GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCC-CHHHHHHHTTCSSCCC---CCS
T ss_pred             HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcCCC-CHHHHHHHhCCccccccccccc
Confidence            244678999999999999888888777777665431 12468999999999997632 23444444432           


Q ss_pred             ---cCCCccccCccCCHHHHHHHHhhc
Q 021615          251 ---IGCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       251 ---~g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                         ..+.++||+++.|++++|+.++..
T Consensus       163 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          163 QRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             cceEEEEEeECCcCCCHHHHHHHHHhh
Confidence               125568999999999999998653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.84  E-value=6e-21  Score=182.79  Aligned_cols=157  Identities=22%  Similarity=0.272  Sum_probs=106.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc--CCchHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--LGKGLGR  179 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~--~~~~l~~  179 (310)
                      ++|++||.||||||||+|+|++.+.. +.++|++|.+...+.+....        ..+.+|||||+.....  ....+..
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~~~~~   73 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--------KTFKLVDTCGVFDNPQDIISQKMKE   73 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--------EEEEEEECTTTTSSGGGCCCHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--------eEEEEEECCCccccccchHHHHHHH
Confidence            68999999999999999999998865 48999999988887776543        2789999999976421  2344566


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC---Ccc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---DKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~---~~~  256 (310)
                      .+..+++.||++++|+|+.++.+..+. .+.+.+..     .++|+++|+||+|+....  .......+..+++   ..+
T Consensus        74 ~~~~~~~~ad~il~V~D~~~~~~~~d~-~i~~~l~~-----~~~p~ilv~NK~D~~~~~--~~~~~~~~~~lg~~~~~~i  145 (439)
T 1mky_A           74 VTLNMIREADLVLFVVDGKRGITKEDE-SLADFLRK-----STVDTILVANKAENLREF--EREVKPELYSLGFGEPIPV  145 (439)
T ss_dssp             HHHHHHTTCSEEEEEEETTTCCCHHHH-HHHHHHHH-----HTCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEEC
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCCEEEEEeCCCCcccc--HHHHHHHHHhcCCCCEEEE
Confidence            677788999999999999876655442 33344543     368999999999985321  1222122334544   458


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|+.++++.+....
T Consensus       146 SA~~g~gv~~L~~~i~~~l  164 (439)
T 1mky_A          146 SAEHNINLDTMLETIIKKL  164 (439)
T ss_dssp             BTTTTBSHHHHHHHHHHHH
T ss_pred             eccCCCCHHHHHHHHHHhc
Confidence            9999999999999986654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=7.5e-21  Score=156.89  Aligned_cols=160  Identities=13%  Similarity=0.112  Sum_probs=105.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||+|+|++........+... ......+....    ..  ..+.+|||||+.+..       ....
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~----~~--~~~~~~Dt~G~~~~~-------~~~~   69 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDK----SI--CTLQITDTTGSHQFP-------AMQR   69 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC-EEEEEEEEETT----EE--EEEEEEECCSCSSCH-------HHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc-ccEEEEEEECC----EE--EEEEEEECCCchhhH-------HHHH
Confidence            5799999999999999999998764322111111 11111111111    11  268999999987652       2333


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~sa~  259 (310)
                      .++..+|++++|+|++++.+++....++..+..+.....+.|+++|+||+|+.+..+. ..........  ..+.++|++
T Consensus        70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  149 (172)
T 2erx_A           70 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAK  149 (172)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred             HhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCC
Confidence            4567899999999999877777777777777765433347899999999998653221 1122222222  345669999


Q ss_pred             ccCCHHHHHHHHhhccC
Q 021615          260 TELSSEDAVKSLSTEGG  276 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~~  276 (310)
                      ++.|++++++.+.....
T Consensus       150 ~~~gi~~l~~~l~~~~~  166 (172)
T 2erx_A          150 LNHNVKELFQELLNLEK  166 (172)
T ss_dssp             TTBSHHHHHHHHHHTCC
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            99999999999877553

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.84  E-value=7.3e-21  Score=177.80  Aligned_cols=162  Identities=21%  Similarity=0.273  Sum_probs=107.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH---
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG---  178 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~---  178 (310)
                      .+.|+++|++|||||||+|+|++....+.+++++|+++..+.+.....        .+.+|||||++....  ..+.   
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--------~v~l~DT~G~i~~lp--~~lve~f  248 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--------KIMLVDTVGFIRGIP--PQIVDAF  248 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--------EEEEEECCCBCSSCC--GGGHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--------EEEEEeCCCchhcCC--HHHHHHH
Confidence            445999999999999999999999876688999999998888875432        689999999865321  2222   


Q ss_pred             HHHHHHhhhcCEEEEecccCCCC--cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-H-HHHHHHHHHhc---
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAEN--PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-R-LQSLTEEILKI---  251 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~--~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~-~~~l~~~l~~~---  251 (310)
                      +..+.++..+|++++|+|++++.  ..+....+.+.+..+..  .+.|+++|+||+|+.+... . ...+......+   
T Consensus       249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~  326 (364)
T 2qtf_A          249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGV--SGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSP  326 (364)
T ss_dssp             HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC--CSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc--CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence            33455678899999999998765  44555555555655432  4689999999999976421 1 11221111222   


Q ss_pred             --CCCccccCccCCHHHHHHHHhhcc
Q 021615          252 --GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       252 --g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                        .+..+|++++.|++++++.+....
T Consensus       327 ~~~~~~~SA~~g~gi~~L~~~I~~~l  352 (364)
T 2qtf_A          327 IFDVIPISALKRTNLELLRDKIYQLA  352 (364)
T ss_dssp             EEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCcCHHHHHHHHHHHh
Confidence              346699999999999999886543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.84  E-value=1.2e-21  Score=163.26  Aligned_cols=164  Identities=15%  Similarity=0.089  Sum_probs=107.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++........+.++.+.....+.....   .  ...+.+|||||+.++..    +   +
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---~--~~~~~~~Dt~G~~~~~~----~---~   73 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGN---L--NVTLQIWDIGGQTIGGK----M---L   73 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTT---E--EEEEEEEECTTCCTTCT----T---H
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCC---C--EEEEEEEECCCCccccc----h---h
Confidence            367999999999999999999987532111111112222223332210   0  12789999999876532    2   2


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT  257 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~s  257 (310)
                      ..+++.+|++++|+|++++.+++....|..++..+.......| +++|+||+|+.+... ..+...+....  +.+.++|
T Consensus        74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  153 (178)
T 2hxs_A           74 DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVS  153 (178)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEEC
T ss_pred             hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEe
Confidence            3456789999999999998888888788887776432112456 789999999965321 11222222233  3456699


Q ss_pred             cCccCCHHHHHHHHhhccCC
Q 021615          258 SETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~~~  277 (310)
                      |+++.|+.++|..+......
T Consensus       154 a~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          154 AKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             TTTCTTHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999998776533

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.84  E-value=5.1e-21  Score=159.09  Aligned_cols=158  Identities=13%  Similarity=0.085  Sum_probs=111.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||+++|++........+.++.+.....+....    ..  ..+.+|||||+.+...       .+.
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~Dt~G~~~~~~-------~~~   81 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED----RT--VRLQLWDTAGQERFRS-------LIP   81 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETT----EE--EEEEEEEECCSGGGGG-------GSH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECC----eE--EEEEEEECCCcHHHHH-------HHH
Confidence            6799999999999999999998765444444444444333343221    11  2689999999866532       223


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~  259 (310)
                      .++..+|++++|+|++++.+++....|..++..+..  .+.|+++|+||+|+.+..+ ..++.......  ..+.++|++
T Consensus        82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (179)
T 2y8e_A           82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK  159 (179)
T ss_dssp             HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTT
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCC
Confidence            456789999999999987777777777777765432  3689999999999864321 12223333333  345669999


Q ss_pred             ccCCHHHHHHHHhhcc
Q 021615          260 TELSSEDAVKSLSTEG  275 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~  275 (310)
                      ++.|+++++..+....
T Consensus       160 ~~~~i~~l~~~l~~~~  175 (179)
T 2y8e_A          160 AGYNVKQLFRRVAAAL  175 (179)
T ss_dssp             TTBSHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999987655

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.84  E-value=1e-20  Score=161.67  Aligned_cols=163  Identities=19%  Similarity=0.173  Sum_probs=113.2

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..++|+++|.+|||||||+++|++........+.++.+.....+....    ..  ..+.+|||||+.+.....      
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~~~------   74 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDD----RL--VTMQIWDTAGQERFQSLG------   74 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSS----CE--EEEEEEEECSSGGGSCSC------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECC----EE--EEEEEEeCCCcHHHHHhH------
Confidence            346899999999999999999998875443344444443334443321    11  268999999987653321      


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH---hcCCCc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDK  255 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~---~~g~~~  255 (310)
                       ..+++.+|++++|+|++++.+++....|..++..+..  ...+.|+++|+||+|+.......+.......   ...+.+
T Consensus        75 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  153 (207)
T 1vg8_A           75 -VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFE  153 (207)
T ss_dssp             -CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEE
T ss_pred             -HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEE
Confidence             2446789999999999988878777777777665421  1136899999999999743222233333332   345567


Q ss_pred             cccCccCCHHHHHHHHhhccC
Q 021615          256 VTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      +||+++.|++++|..+.....
T Consensus       154 ~Sa~~g~gi~~l~~~l~~~~~  174 (207)
T 1vg8_A          154 TSAKEAINVEQAFQTIARNAL  174 (207)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999877653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=4.1e-21  Score=164.83  Aligned_cols=161  Identities=17%  Similarity=0.100  Sum_probs=112.8

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ...++|+++|.+|||||||+++|++........+..+.+.....+..+.    ..  ..+.+|||||+.+.       ..
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~l~l~Dt~G~~~~-------~~   90 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING----EK--VKLQIWDTAGQERF-------RS   90 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETT----EE--EEEEEEEECCSGGG-------HH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC----EE--EEEEEEECCCcHHH-------HH
Confidence            4457899999999999999999998765443333333333333333221    11  26899999998554       22


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHH--hcCCCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~--~~g~~~~  256 (310)
                      .+..+++.+|++++|+|+++..+++.+..|..++..+..  .+.|+++|+||+|+.+..+. .++..+...  ...+.++
T Consensus        91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  168 (201)
T 2ew1_A           91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLET  168 (201)
T ss_dssp             HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEEC
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEE
Confidence            344567899999999999998888888888888877643  46899999999999643211 122222222  3445679


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|++++|..+....
T Consensus       169 Sa~~g~gv~~l~~~l~~~i  187 (201)
T 2ew1_A          169 SAKESDNVEKLFLDLACRL  187 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999999987655

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.84  E-value=6.9e-21  Score=158.85  Aligned_cols=153  Identities=11%  Similarity=0.114  Sum_probs=104.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||+++|++.....  +..|+.......+..+.    ..  ..+.+|||||+.+            .
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~------------~   67 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDG----QT--HLVLIREEAGAPD------------A   67 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETT----EE--EEEEEEECSSSCC------------H
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECC----EE--EEEEEEECCCCch------------h
Confidence            579999999999999999999876432  22222111122222211    11  2689999999864            1


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCC------cHhHHHHHHHHHHhcCCCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPE------ARDRLQSLTEEILKIGCDK  255 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~------~~~~~~~l~~~l~~~g~~~  255 (310)
                      .+++.+|++++|+|++++.+++....|.+.+..... ...+.|+++|+||+|+..      ..+....+...+....+.+
T Consensus        68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~  147 (178)
T 2iwr_A           68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYE  147 (178)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEE
T ss_pred             HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEE
Confidence            345689999999999998888888877655554321 114689999999999842      1122333333332345677


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +||+++.|++++|..+....
T Consensus       148 ~Sa~~~~~i~~lf~~l~~~~  167 (178)
T 2iwr_A          148 TXATYGLNVDRVFQEVAQKV  167 (178)
T ss_dssp             EBTTTTBTHHHHHHHHHHHH
T ss_pred             EeccccCCHHHHHHHHHHHH
Confidence            99999999999999987655

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.84  E-value=6.2e-21  Score=161.54  Aligned_cols=160  Identities=16%  Similarity=0.085  Sum_probs=109.7

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|||||||+++|++........+..+.......+..+.    ..  ..+.+|||||+.+....       
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~~-------   86 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDG----KQ--IKLQIWDTAGQESFRSI-------   86 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETT----EE--EEEEEECCTTGGGTSCC-------
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC----EE--EEEEEEECCCchhhhhh-------
Confidence            457899999999999999999998775443333333222222332221    11  26899999998765332       


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~s  257 (310)
                      +..+++.+|++++|+|+++..+++....|..++..+..  .+.|+++|+||+|+..... ..++..+....  +.+.++|
T Consensus        87 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  164 (191)
T 2a5j_A           87 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETS  164 (191)
T ss_dssp             CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEe
Confidence            23456789999999999998888888888888876543  4689999999999964321 12222333333  3455699


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |+++.|++++|..+....
T Consensus       165 a~~~~gi~~l~~~l~~~i  182 (191)
T 2a5j_A          165 AKTACNVEEAFINTAKEI  182 (191)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999987655

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.84  E-value=9e-21  Score=160.13  Aligned_cols=161  Identities=12%  Similarity=0.068  Sum_probs=110.3

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ...++|+++|.+|||||||+++|++........+..+.......+....    .  ...+.+|||||+.+....      
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~l~Dt~G~~~~~~~------   87 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHD----K--RIKLQIWDTAGQERYRTI------   87 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETT----E--EEEEEEEECCSCCSSCCS------
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECC----e--EEEEEEEeCCCcHHHhhh------
Confidence            3457899999999999999999998764332222222111112222111    1  127899999998765332      


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~  256 (310)
                       +..++..+|++++|+|+++..+++....|..++..+..  .+.|+++|+||+|+..... ..+...+....  +.+.++
T Consensus        88 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (189)
T 2gf9_A           88 -TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW--DNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEA  164 (189)
T ss_dssp             -GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred             -HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEE
Confidence             23456789999999999988888888888888877642  4689999999999975321 12223333333  345669


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      |++++.|++++|..+....
T Consensus       165 Sa~~g~gi~~l~~~l~~~i  183 (189)
T 2gf9_A          165 SAKENINVKQVFERLVDVI  183 (189)
T ss_dssp             BTTTTBSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            9999999999999987654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.84  E-value=7.1e-21  Score=160.88  Aligned_cols=159  Identities=14%  Similarity=0.137  Sum_probs=110.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|||||||+++|++.......+ .+|.......+....        ..+.+|||||+.+...       .
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~-------~   83 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI-LPTIGFSIEKFKSSS--------LSFTVFDMSGQGRYRN-------L   83 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC-CCCSSEEEEEEECSS--------CEEEEEEECCSTTTGG-------G
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCc-CCccceeEEEEEECC--------EEEEEEECCCCHHHHH-------H
Confidence            45789999999999999999999876333222 234334444444432        2799999999876532       2


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--h-----cC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEARDRLQSLTEEIL--K-----IG  252 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~-----~g  252 (310)
                      +..+++.+|++++|+|+++..+++....++.++...... ..+.|+++|+||+|+..... .+++.+.+.  .     ..
T Consensus        84 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~  162 (190)
T 2h57_A           84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT-SVKVSQLLCLENIKDKPWH  162 (190)
T ss_dssp             GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCEE
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC-HHHHHHHhChhhccCCceE
Confidence            234567899999999999877777776676666553210 03689999999999976422 334444442  1     23


Q ss_pred             CCccccCccCCHHHHHHHHhhccC
Q 021615          253 CDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      +.++||+++.|++++|+.+.....
T Consensus       163 ~~~~Sa~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          163 ICASDAIKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHC-
T ss_pred             EEEccCCCCcCHHHHHHHHHHHHH
Confidence            556999999999999999877653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.84  E-value=1.5e-20  Score=154.27  Aligned_cols=158  Identities=18%  Similarity=0.154  Sum_probs=107.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||+++|++... ...+..|+.......+....    ..  ..+.+|||||+.+..       ..+.
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~~~l~D~~G~~~~~-------~~~~   70 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG----EE--VQIDILDTAGQEDYA-------AIRD   70 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETT----EE--EEEEEEECCC---CH-------HHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECC----EE--EEEEEEECCCcchhH-------HHHH
Confidence            5799999999999999999998763 23344444333322232221    11  168999999986542       2334


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~sa~  259 (310)
                      .++..+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+.+..+ ..++..+.....  .+.++|++
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  149 (168)
T 1u8z_A           71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAK  149 (168)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCC
Confidence            456789999999999988888877777777766532 13689999999999965321 123333344433  45669999


Q ss_pred             ccCCHHHHHHHHhhcc
Q 021615          260 TELSSEDAVKSLSTEG  275 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~  275 (310)
                      ++.|++++|+.+....
T Consensus       150 ~~~gi~~l~~~l~~~i  165 (168)
T 1u8z_A          150 TRANVDKVFFDLMREI  165 (168)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999986643

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.84  E-value=3.5e-21  Score=158.95  Aligned_cols=159  Identities=18%  Similarity=0.097  Sum_probs=106.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++........+..+.......+..+.    ..  ..+.+|||||+.+...       ..
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~-------~~   72 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGG----KR--VNLAIWDTAGQERFHA-------LG   72 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSS----CE--EEEEEEECCCC--------------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECC----EE--EEEEEEECCCcHhhhh-------hH
Confidence            46899999999999999999998764433333333332223333221    11  2689999999865422       12


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~sa  258 (310)
                      ..+++.+|++++|+|+++..+++....|..++..+..  .+.|+++|+||+|+.+... ..++..+.....+  +.++||
T Consensus        73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  150 (170)
T 1z08_A           73 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSA  150 (170)
T ss_dssp             CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBT
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecC
Confidence            2346789999999999988888888777777765432  3689999999999975321 1233333334444  456899


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|+.+....
T Consensus       151 ~~~~gi~~l~~~l~~~~  167 (170)
T 1z08_A          151 KQNKGIEELFLDLCKRM  167 (170)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999987654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.84  E-value=2.8e-20  Score=152.77  Aligned_cols=153  Identities=20%  Similarity=0.191  Sum_probs=107.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||+++|++.... ...  +|.......+....        ..+.+|||||+.+.       ...+.
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~-------~~~~~   62 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKN--------ISFTVWDVGGQDKI-------RPLWR   62 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSS-CCC--CCSSCCEEEEECSS--------CEEEEEECCCCGGG-------HHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcC-ccc--CcCceeEEEEEECC--------EEEEEEEcCCChhh-------HHHHH
Confidence            47999999999999999999876532 112  23333333444322        27999999998654       22344


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cCCCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK  255 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g~~~  255 (310)
                      .+++.+|++++|+|++++.+++....++..+.... ...+.|+++|+||+|+.+... .+++.+.+..       ..+.+
T Consensus        63 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~  140 (164)
T 1r8s_A           63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYIQA  140 (164)
T ss_dssp             HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEEEE
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCeEEEEEECcCCcCCCC-HHHHHHHhCcccccCccEEEEE
Confidence            56789999999999998887877776666654321 123689999999999976522 2333333321       12456


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +||+++.|++++|+.+....
T Consensus       141 ~Sa~~~~gi~~l~~~l~~~i  160 (164)
T 1r8s_A          141 TCATSGDGLYEGLDWLSNQL  160 (164)
T ss_dssp             CBTTTTBTHHHHHHHHHHHC
T ss_pred             cccCCCcCHHHHHHHHHHHH
Confidence            99999999999999987655

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.84  E-value=6.5e-21  Score=162.90  Aligned_cols=153  Identities=22%  Similarity=0.224  Sum_probs=104.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++.+...  + .+|..+....+..+.        ..+.+|||||+.+...       .+
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~--~-~~t~~~~~~~~~~~~--------~~l~i~Dt~G~~~~~~-------~~   86 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQ--H-VPTLHPTSEELTIAG--------MTFTTFDLGGHIQARR-------VW   86 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETT--------EEEEEEEECC----CC-------GG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCc--c-CCCCCceeEEEEECC--------EEEEEEECCCcHhhHH-------HH
Confidence            3579999999999999999999876321  1 124444445554432        2789999999876532       12


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-----------
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-----------  250 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-----------  250 (310)
                      ..+++.+|++++|+|++++.+++....+..++.... ...+.|+++|+||+|+.... ..+++.+.+..           
T Consensus        87 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~  164 (198)
T 1f6b_A           87 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEAI-SEERLREMFGLYGQTTGKGSVS  164 (198)
T ss_dssp             GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTCC-CHHHHHHHHTCTTTCCCSSCCC
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccccC-CHHHHHHHhCcccccccccccc
Confidence            245678999999999999888888777777665431 12478999999999997632 23444444431           


Q ss_pred             --------cCCCccccCccCCHHHHHHHHhhc
Q 021615          251 --------IGCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       251 --------~g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                              ..+.++||+++.|++++|..+...
T Consensus       165 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          165 LKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             TTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             cccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence                    134558999999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.84  E-value=4.8e-21  Score=162.19  Aligned_cols=162  Identities=18%  Similarity=0.075  Sum_probs=110.1

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      ....++|+|+|.+|||||||+++|++........+..+.......+....    .  ...+.+|||||+.+...    + 
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~~----~-   90 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT----A--AVKAQIWDTAGLERYRA----I-   90 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETT----E--EEEEEEEEESCCCTTCT----T-
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC----E--EEEEEEEeCCCchhhhh----h-
Confidence            34567899999999999999999998764432222211111111221111    1  12689999999976532    2 


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCc
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDK  255 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~  255 (310)
                        +..+++.+|++++|+|++++.+++....|+.++..+..  .+.|+++|+||+|+..... ..+.........+  +.+
T Consensus        91 --~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  166 (193)
T 2oil_A           91 --TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLE  166 (193)
T ss_dssp             --HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred             --hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEE
Confidence              23456789999999999988777777778877776432  4689999999999975321 1233333333444  556


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +||+++.|+.++|..+....
T Consensus       167 ~Sa~~~~gi~~l~~~l~~~i  186 (193)
T 2oil_A          167 TSALDSTNVELAFETVLKEI  186 (193)
T ss_dssp             ECTTTCTTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999986654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.84  E-value=1.2e-20  Score=160.99  Aligned_cols=160  Identities=12%  Similarity=0.084  Sum_probs=110.3

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..++|+++|.+|||||||+++|++........+..+.......+....    .  ...+.+|||||+.+.       ...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~l~Dt~G~~~~-------~~~   73 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND----K--RIKLQIWDTAGLERY-------RTI   73 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETT----E--EEEEEEEEECCSGGG-------HHH
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECC----e--EEEEEEEECCCchhh-------cch
Confidence            356899999999999999999998764332222222211122222111    1  127899999998654       223


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~s  257 (310)
                      +..+++.+|++++|+|++++.+++....|..++..+..  .+.|+++|+||+|+..... ..+...+....  +.+.++|
T Consensus        74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (203)
T 1zbd_A           74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEAS  151 (203)
T ss_dssp             HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECB
T ss_pred             HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEE
Confidence            45567899999999999998888888888888877642  3689999999999976321 12222222233  3455699


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |+++.|++++|..+....
T Consensus       152 a~~~~gi~~l~~~l~~~i  169 (203)
T 1zbd_A          152 AKDNINVKQTFERLVDVI  169 (203)
T ss_dssp             TTTTBSSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999987654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.84  E-value=1.1e-20  Score=159.48  Aligned_cols=162  Identities=17%  Similarity=0.037  Sum_probs=108.6

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|||||||+++|++........+..+.+.....+....    ..  ..+.+|||||+.+...      ..
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~------~~   86 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG----ER--IKIQLWDTAGQERFRK------SM   86 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT----EE--EEEEEEECCCSHHHHT------TT
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECC----EE--EEEEEEECCCchhhhh------hh
Confidence            457899999999999999999998764433333333222222332221    11  2689999999854420      12


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~s  257 (310)
                      +..+++.+|++++|+|+++..+++.+..|..++..+.. ..+.|+++|+||+|+.+..+. .+...+.....  .+.++|
T Consensus        87 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  165 (189)
T 1z06_A           87 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETS  165 (189)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECC
T ss_pred             hHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEe
Confidence            33456789999999999998888888778888776532 236899999999999653221 22222223333  455699


Q ss_pred             cCcc---CCHHHHHHHHhhcc
Q 021615          258 SETE---LSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~---~gi~~l~~~l~~~~  275 (310)
                      ++++   .|+.++|..++...
T Consensus       166 a~~~~~~~~i~~l~~~l~~~i  186 (189)
T 1z06_A          166 AKNPNDNDHVEAIFMTLAHKL  186 (189)
T ss_dssp             SSSGGGGSCHHHHHHHHC---
T ss_pred             CCcCCcccCHHHHHHHHHHHH
Confidence            9999   99999999986654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=9.1e-21  Score=159.83  Aligned_cols=158  Identities=15%  Similarity=0.122  Sum_probs=107.3

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      +...+|+++|.+|||||||+++|++.+...  + ..|.......+....        ..+.+|||||+.+...       
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~-~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~-------   75 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH--T-SPTIGSNVEEIVINN--------TRFLMWDIGGQESLRS-------   75 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEE--E-ECCSCSSCEEEEETT--------EEEEEEECCC----CG-------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCc--C-cCCCccceEEEEECC--------EEEEEEECCCCHhHHH-------
Confidence            345789999999999999999999765321  1 112222233333321        2789999999976532       


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-----c--C
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-----I--G  252 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-----~--g  252 (310)
                      .+..+++.+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+.+... .+++.+.+..     .  .
T Consensus        76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~  153 (187)
T 1zj6_A           76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQWH  153 (187)
T ss_dssp             GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCEE
T ss_pred             HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhch-hhCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhhcCCCcE
Confidence            12345678999999999999888888877777776531 114689999999999976422 2334433321     1  3


Q ss_pred             CCccccCccCCHHHHHHHHhhccCC
Q 021615          253 CDKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      +.++||+++.|++++++.+......
T Consensus       154 ~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          154 IQACCALTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred             EEEccCCCCcCHHHHHHHHHHHHHH
Confidence            4569999999999999998776533

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.84  E-value=1.3e-20  Score=160.77  Aligned_cols=161  Identities=18%  Similarity=0.158  Sum_probs=113.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..++|+|+|.+|||||||+++|++... ...+..|+.......+....    ..  ..+.+|||||+.+..    .   .
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~----~---~   78 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG----EE--VQIDILDTAGQEDYA----A---I   78 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETT----EE--EEEEEEECCCTTCCH----H---H
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECC----EE--EEEEEEcCCChhhhH----H---H
Confidence            346899999999999999999998763 34455554433333333221    11  168999999986652    2   2


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~s  257 (310)
                      +..++..+|++++|+|+++..+++....|...+..+.. ..+.|+++|+||+|+.+..+ ..++..+.....  .+.++|
T Consensus        79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (206)
T 2bov_A           79 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS  157 (206)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEe
Confidence            33456689999999999998888888888887776542 13689999999999975321 123333344433  456699


Q ss_pred             cCccCCHHHHHHHHhhccC
Q 021615          258 SETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~~  276 (310)
                      ++++.|++++|..+.....
T Consensus       158 a~~g~gi~~l~~~l~~~i~  176 (206)
T 2bov_A          158 AKTRANVDKVFFDLMREIR  176 (206)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999877654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.84  E-value=8.1e-21  Score=161.09  Aligned_cols=159  Identities=16%  Similarity=0.154  Sum_probs=107.4

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..++|+|+|.+|||||||+++|++.......+.. |.......+....        ..+.+|||||+.+...       .
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~-------~   79 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKGR--------VAFTVFDMGGAKKFRG-------L   79 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEETT--------EEEEEEEECCSGGGGG-------G
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeCC--------EEEEEEECCCCHhHHH-------H
Confidence            3467999999999999999999988744422222 2222233333221        2799999999976532       2


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcC------CCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-----
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN------PDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----  249 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~------~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-----  249 (310)
                      +..+++.+|++++|+|+++..+++....++..+....      +...+.|+++|+||+|+..... .+++.+.+.     
T Consensus        80 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~  158 (199)
T 4bas_A           80 WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-AAELVEILDLTTLM  158 (199)
T ss_dssp             GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-HHHHHHHHTHHHHH
T ss_pred             HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-HHHHHHHhcchhhc
Confidence            2345678999999999999888888777766665421      1112789999999999986522 222322221     


Q ss_pred             ---hcCCCccccCccCCHHHHHHHHhhccC
Q 021615          250 ---KIGCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       250 ---~~g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                         ...+.++||+++.|++++|+.+.....
T Consensus       159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  188 (199)
T 4bas_A          159 GDHPFVIFASNGLKGTGVHEGFSWLQETAS  188 (199)
T ss_dssp             TTSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred             cCCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence               123556999999999999999877553

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.84  E-value=1.1e-20  Score=156.03  Aligned_cols=156  Identities=15%  Similarity=0.127  Sum_probs=107.5

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      +..++|+++|.+|||||||+++|++..... .  ..|.......+....        ..+.+|||||+.+...       
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~--------~~~~~~Dt~G~~~~~~-------   66 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-T--IPTIGFNVETVTYKN--------LKFQVWDLGGLTSIRP-------   66 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-C--CCCSSEEEEEEEETT--------EEEEEEEECCCGGGGG-------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-c--CCcCccceEEEEECC--------EEEEEEECCCChhhhH-------
Confidence            445789999999999999999999775321 1  122222223333321        2789999999866432       


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cC
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IG  252 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g  252 (310)
                      .+..+++.+|++++|+|++++.++.....++..+.... ...+.|+++|+||+|+.+..+ .+++.+.+..       +.
T Consensus        67 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~  144 (171)
T 1upt_A           67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQAMT-SSEMANSLGLPALKDRKWQ  144 (171)
T ss_dssp             GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCTTSCEE
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhCCCEEEEEEECCCCcCCCC-HHHHHHHhCchhccCCceE
Confidence            22345678999999999999888877766666554321 124789999999999986522 2333333321       13


Q ss_pred             CCccccCccCCHHHHHHHHhhcc
Q 021615          253 CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +.++|++++.|++++++.+....
T Consensus       145 ~~~~Sa~~~~gi~~l~~~l~~~i  167 (171)
T 1upt_A          145 IFKTSATKGTGLDEAMEWLVETL  167 (171)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEECcCCCCcCHHHHHHHHHHHH
Confidence            55699999999999999987654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.84  E-value=5.3e-21  Score=157.38  Aligned_cols=158  Identities=15%  Similarity=0.099  Sum_probs=108.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++........+..+.+.....+....    .  ...+.+|||||+.+....       .
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~l~Dt~G~~~~~~~-------~   71 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND----E--DVRLMLWDTAGQEEFDAI-------T   71 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETT----E--EEEEEEECCTTGGGTTCC-------C
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECC----E--EEEEEEEcCCCcHhHHHH-------H
Confidence            46799999999999999999998764332222222222222232211    1  126899999998765321       2


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~sa  258 (310)
                      ..+++.+|++++|+|++++.+++....|..++..+.   .+.|+++|+||+|+.+..+ ..++..+.....  .+.++|+
T Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (168)
T 1z2a_A           72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSV  148 (168)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEec
Confidence            345668999999999998877777777777776543   3689999999999875321 122333333333  4556999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|+++++..+....
T Consensus       149 ~~~~~i~~l~~~l~~~~  165 (168)
T 1z2a_A          149 KEDLNVSEVFKYLAEKH  165 (168)
T ss_dssp             TTTBSSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999986543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.84  E-value=6.1e-21  Score=158.93  Aligned_cols=159  Identities=16%  Similarity=0.111  Sum_probs=108.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .++|+++|.+|||||||+++|++... ...+..|+.......+..+.    .  ...+.+|||||+.+...    +.   
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~--~~~~~~~Dt~G~~~~~~----~~---   74 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDG----I--PARLDILDTAGQEEFGA----MR---   74 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETT----E--EEEEEEEECCCTTTTSC----CH---
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECC----E--EEEEEEEECCCchhhHH----HH---
Confidence            36799999999999999999998742 23444444433333333221    1  12689999999876532    22   


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~sa  258 (310)
                      ..++..+|++++|+|+++..++.....|..++..... ..+.|+++|+||+|+....+. .+.........  .+.++|+
T Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  153 (181)
T 2fn4_A           75 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASA  153 (181)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecC
Confidence            2345689999999999988777777777777633211 246899999999999753221 12222222333  4556999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|+.+....
T Consensus       154 ~~~~gv~~l~~~l~~~~  170 (181)
T 2fn4_A          154 KLRLNVDEAFEQLVRAV  170 (181)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999987655

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.84  E-value=1.6e-20  Score=158.02  Aligned_cols=151  Identities=21%  Similarity=0.232  Sum_probs=105.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccce----EeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG----RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~----~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      .++|+++|.+|||||||+++|++....       ...|+.+    .+....        ..+.+|||||+.+.       
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~-------~~~~t~g~~~~~~~~~~--------~~l~i~Dt~G~~~~-------   73 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASEDIS-------HITPTQGFNIKSVQSQG--------FKLNVWDIGGQRKI-------   73 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCSCCE-------EEEEETTEEEEEEEETT--------EEEEEEECSSCGGG-------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCC-------cccCcCCeEEEEEEECC--------EEEEEEECCCCHHH-------
Confidence            468999999999999999999987421       1122222    232221        27899999998654       


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------  250 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------  250 (310)
                      ...+..++..+|++++|+|+++..+++....++.++.... ...+.|+++|+||+|+..... .+++.+.+..       
T Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~  151 (181)
T 1fzq_A           74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEE-KLSCVPVLIFANKQDLLTAAP-ASEIAEGLNLHTIRDRV  151 (181)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCG-GGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSC
T ss_pred             HHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcCcccCCC-HHHHHHHhCchhccCCc
Confidence            2344566789999999999998888877766666553311 124689999999999986532 2334333321       


Q ss_pred             cCCCccccCccCCHHHHHHHHhhccC
Q 021615          251 IGCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       251 ~g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      ..+.++||+++.|++++|..+.....
T Consensus       152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (181)
T 1fzq_A          152 WQIQSCSALTGEGVQDGMNWVCKNVN  177 (181)
T ss_dssp             EEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred             eEEEEccCCCCCCHHHHHHHHHHHHH
Confidence            23556899999999999999877653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.84  E-value=1.8e-21  Score=163.21  Aligned_cols=160  Identities=14%  Similarity=0.119  Sum_probs=86.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|||||||+++|++........+.++.+.....+..+.    ..  ..+.+|||||+.+...       .
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~-------~   73 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG----KR--IKLQIWDTAGQERFRT-------I   73 (183)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETT----EE--EEEEEEEC----------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECC----EE--EEEEEEcCCCChhhhh-------h
Confidence            356899999999999999999997653322222223222222332221    11  2689999999865432       1


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~s  257 (310)
                      +..+++.+|++++|+|++++.+++....|..++..+..  .+.|+++|+||+|+.+... ..+...+....  +.+.++|
T Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  151 (183)
T 2fu5_C           74 TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS  151 (183)
T ss_dssp             CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred             HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEe
Confidence            22446789999999999998888888888888876532  3689999999999975321 12222333333  3456699


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |+++.|++++|..+....
T Consensus       152 a~~~~~i~~l~~~l~~~i  169 (183)
T 2fu5_C          152 AKANINVENAFFTLARDI  169 (183)
T ss_dssp             C---CCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999987655

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=1.9e-20  Score=158.57  Aligned_cols=157  Identities=15%  Similarity=0.111  Sum_probs=109.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++... ...+..|+.......+....    ..  ..+.+|||||+.++...       .
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~~~i~D~~G~~~~~~~-------~   83 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGG----KQ--YLLGLYDTAGQEDYDRL-------R   83 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSS----CE--EEEEEECCCCSSSSTTT-------G
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECC----EE--EEEEEEECCCCcchhHH-------H
Confidence            46899999999999999999998752 23344444333222333221    11  26899999999766332       2


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------------HHHHHHH
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------------LQSLTEE  247 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~l~~~  247 (310)
                      ..+++.+|++++|+|++++.+++... .|..++..+.   .+.|+++|+||+|+....+.             .++..+.
T Consensus        84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (194)
T 2atx_A           84 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL  160 (194)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH
T ss_pred             HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHH
Confidence            24567899999999999887777775 6777787754   27899999999999764211             1222222


Q ss_pred             HHhc---CCCccccCccCCHHHHHHHHhhcc
Q 021615          248 ILKI---GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       248 l~~~---g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ....   .+.++||+++.|++++|..+....
T Consensus       161 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i  191 (194)
T 2atx_A          161 AKEIGACCYVECSALTQKGLKTVFDEAIIAI  191 (194)
T ss_dssp             HHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            2222   566799999999999999986643

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.84  E-value=2.1e-21  Score=174.72  Aligned_cols=157  Identities=23%  Similarity=0.351  Sum_probs=114.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC--chHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~--~~l~~~  180 (310)
                      ++|+++|.+|||||||+|+|++....+++++++|.+...+.+.....        .+.+|||||+.+.....  ..+...
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--------~~~liDtpG~~~~~~~~~~~~~~e~   75 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--------QVTLVDLPGTYSLTTISSQTSLDEQ   75 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--------EEEEEECCCCSCSCC----CCHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--------ceEEEECcCCCccccccccCCHHHH
Confidence            57999999999999999999999876789999999888887775432        78999999998764211  122222


Q ss_pred             HHHH---hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCC
Q 021615          181 FLRH---LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCD  254 (310)
Q Consensus       181 ~~~~---l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~  254 (310)
                      +.+.   .+.+|++++|+|+++.   +....+...+...     +.|+++|+||+|+.....   ..+.+.+.+ .+.+.
T Consensus        76 i~~~~~~~~~~d~ii~VvD~~~~---~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l-g~~~i  146 (274)
T 3i8s_A           76 IACHYILSGDADLLINVVDASNL---ERNLYLTLQLLEL-----GIPCIVALNMLDIAEKQNIRIEIDALSARL-GCPVI  146 (274)
T ss_dssp             HHHHHHHHTCCSEEEEEEEGGGH---HHHHHHHHHHHHH-----TCCEEEEEECHHHHHHTTEEECHHHHHHHH-TSCEE
T ss_pred             HHHHHHhhcCCCEEEEEecCCCh---HHHHHHHHHHHhc-----CCCEEEEEECccchhhhhHHHHHHHHHHhc-CCCEE
Confidence            2222   3689999999999863   3334444555543     689999999999864321   234444333 24566


Q ss_pred             ccccCccCCHHHHHHHHhhccC
Q 021615          255 KVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      ++||+++.|+++++..+.....
T Consensus       147 ~~SA~~g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          147 PLVSTRGRGIEALKLAIDRYKA  168 (274)
T ss_dssp             ECCCGGGHHHHHHHHHHHTCCC
T ss_pred             EEEcCCCCCHHHHHHHHHHHHh
Confidence            6999999999999999977654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.83  E-value=2.5e-20  Score=156.87  Aligned_cols=167  Identities=16%  Similarity=0.050  Sum_probs=111.0

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeecc-ceEeeCCCCCCCc---cCCCceEEEeCCCCCccccCCch
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAE---KYSSEATLADLPGLIEGAHLGKG  176 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~-~~~v~~~~~~~~~---~~~~~~~i~DtPG~~~~~~~~~~  176 (310)
                      ...+|+++|.+|||||||+++|++........+..+.... ...+.........   .....+.+|||||+.+.      
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------   83 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF------   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG------
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH------
Confidence            3468999999999999999999987643322222222111 1222222110000   00127899999998543      


Q ss_pred             HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCC
Q 021615          177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGC  253 (310)
Q Consensus       177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~  253 (310)
                       ...+..+++.+|++++|+|++++.+++.+..|..++..+.. ..+.|+++|+||+|+..... ..+...+....  +.+
T Consensus        84 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  161 (195)
T 3bc1_A           84 -RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPY  161 (195)
T ss_dssp             -HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCE
T ss_pred             -HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCE
Confidence             33455677899999999999998888887788887776532 13689999999999975321 12223333333  456


Q ss_pred             CccccCccCCHHHHHHHHhhcc
Q 021615          254 DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .++|++++.|++++|..+....
T Consensus       162 ~~~Sa~~~~~v~~l~~~l~~~~  183 (195)
T 3bc1_A          162 FETSAANGTNISHAIEMLLDLI  183 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6699999999999999987655

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.83  E-value=2.2e-20  Score=157.86  Aligned_cols=159  Identities=21%  Similarity=0.235  Sum_probs=109.5

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      .+...+|+|+|.+|||||||+++|++........  .|.......+....        ..+.+|||||+.+...      
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~------   82 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMI--PTVGFNMRKITKGN--------VTIKLWDIGGQPRFRS------   82 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEETT--------EEEEEEEECCSHHHHT------
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccC--CCCceeEEEEEeCC--------EEEEEEECCCCHhHHH------
Confidence            3456789999999999999999999876432211  22222222333221        2789999999865421      


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------c
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------I  251 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~  251 (310)
                       .+..+++.+|++++|+|+++..+++....++..+.... ...+.|+++|+||+|+....+ .+++.+.+..       .
T Consensus        83 -~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~  159 (188)
T 1zd9_A           83 -MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-QLQGIPVLVLGNKRDLPGALD-EKELIEKMNLSAIQDREI  159 (188)
T ss_dssp             -THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCE
T ss_pred             -HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCCEEEEEECCCCccCCC-HHHHHHHhChhhhccCCe
Confidence             23455678999999999998888887776766665421 124789999999999986422 2333333321       1


Q ss_pred             CCCccccCccCCHHHHHHHHhhccC
Q 021615          252 GCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       252 g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      .+.++||+++.|++++|..+.....
T Consensus       160 ~~~~~SA~~g~gv~~l~~~l~~~~~  184 (188)
T 1zd9_A          160 CCYSISCKEKDNIDITLQWLIQHSK  184 (188)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3456999999999999999877653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.83  E-value=8e-21  Score=162.02  Aligned_cols=162  Identities=19%  Similarity=0.138  Sum_probs=111.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..++|+++|.+|||||||+++|++........+.++.+.....+..+.    ..  ..+.+|||||+....   ..+.. 
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~l~i~Dt~g~~~~~---~~~~~-   91 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDK----EE--VTLVVYDIWEQGDAG---GWLRD-   91 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETT----EE--EEEEEECCCCCSGGG---HHHHH-
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECC----EE--EEEEEEecCCCccch---hhhHH-
Confidence            346899999999999999999986554444444454443333333221    11  268899999986541   11222 


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~s  257 (310)
                        .+++.+|++++|+|+++..+++.+..|+.++..+... .+.|+++|+||+|+..... ..++..+....  +.+.++|
T Consensus        92 --~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S  168 (195)
T 3cbq_A           92 --HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETS  168 (195)
T ss_dssp             --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred             --HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEc
Confidence              3356899999999999988888888888888765321 3689999999999975321 12222233333  3456699


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |+++.|++++|..+....
T Consensus       169 a~~~~~v~~lf~~l~~~i  186 (195)
T 3cbq_A          169 AALHHNTRELFEGAVRQI  186 (195)
T ss_dssp             TTTTBSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999987655

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.83  E-value=4e-20  Score=151.19  Aligned_cols=158  Identities=18%  Similarity=0.141  Sum_probs=107.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||+++|++.... ..+..++.......+....    ..  ..+.+|||||+.+..    .+   ..
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~----~~--~~~~~~D~~G~~~~~----~~---~~   69 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDSYRKQVVIDG----ET--CLLDILDTAGQEEYS----AM---RD   69 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETT----EE--EEEEEEECCCCSSCC----HH---HH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceEEEEEEEECC----EE--EEEEEEECCCchhhh----HH---HH
Confidence            57999999999999999999987532 2233333222222222211    11  158999999987642    22   23


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCccccCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET  260 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa~~  260 (310)
                      .++..+|++++|+|+++..+++....|..++..+... .+.|+++|+||+|+.......+...+....  ..+.++|+++
T Consensus        70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  148 (166)
T 2ce2_X           70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKT  148 (166)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTT
T ss_pred             HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCC
Confidence            4556899999999999887777777777777665321 368999999999987632222333333333  3456689999


Q ss_pred             cCCHHHHHHHHhhcc
Q 021615          261 ELSSEDAVKSLSTEG  275 (310)
Q Consensus       261 ~~gi~~l~~~l~~~~  275 (310)
                      +.|+.+++..+....
T Consensus       149 ~~gi~~l~~~l~~~~  163 (166)
T 2ce2_X          149 RQGVEDAFYTLVREI  163 (166)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999986643

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.83  E-value=2.1e-20  Score=156.35  Aligned_cols=161  Identities=14%  Similarity=0.099  Sum_probs=110.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .++|+++|.+|||||||+++|++... ...+..|+.......+....    ..  ..+.+|||||+.++....       
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~~~-------   71 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNG----QE--YHLQLVDTAGQDEYSIFP-------   71 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETT----EE--EEEEEEECCCCCTTCCCC-------
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECC----EE--EEEEEEeCCCchhhhHHH-------
Confidence            46899999999999999999997652 33444444333333333221    11  267999999998763321       


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~sa  258 (310)
                      ..+++.+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+..... ..++..+.....+  +.++||
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  150 (181)
T 3t5g_A           72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSA  150 (181)
T ss_dssp             GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEec
Confidence            2345689999999999998888888888877765432 13689999999999964322 1233333344444  556999


Q ss_pred             CccCCHHHHHHHHhhccCC
Q 021615          259 ETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~~~  277 (310)
                      +++.|+.++|..+......
T Consensus       151 ~~~~~v~~l~~~l~~~~~~  169 (181)
T 3t5g_A          151 KENQTAVDVFRRIILEAEK  169 (181)
T ss_dssp             TSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999998776533

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.83  E-value=2.9e-20  Score=155.58  Aligned_cols=159  Identities=18%  Similarity=0.160  Sum_probs=111.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++... ...+..|+.......+....    ..  ..+.+|||||+.+..       ..+
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~-------~~~   83 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG----EE--VQIDILDTAGQEDYA-------AIR   83 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETT----EE--EEEEEEECCCTTCCH-------HHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECC----EE--EEEEEEECCCCcccH-------HHH
Confidence            46799999999999999999998763 23444444433333232221    11  168999999986542       233


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~sa  258 (310)
                      ..++..+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+.+..+ ..++..+.....+  +.++|+
T Consensus        84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (187)
T 2a9k_A           84 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA  162 (187)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCC
Confidence            4456789999999999988877777777777766532 13689999999999865321 2334444445444  456899


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|..+....
T Consensus       163 ~~~~gi~~l~~~l~~~i  179 (187)
T 2a9k_A          163 KTRANVDKVFFDLMREI  179 (187)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999987654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.83  E-value=1.8e-20  Score=158.32  Aligned_cols=153  Identities=16%  Similarity=0.113  Sum_probs=106.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++........+  |.......+....    ..  ..+.+|||||+.++.          
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~----------   81 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDG----QS--YLLLIRDEGGPPELQ----------   81 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETT----EE--EEEEEEECSSSCCHH----------
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECC----EE--EEEEEEECCCChhhh----------
Confidence            46899999999999999999998764321111  2211112222221    11  267889999986541          


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc------HhHHHHHHHHHHhcCCCc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA------RDRLQSLTEEILKIGCDK  255 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------~~~~~~l~~~l~~~g~~~  255 (310)
                        +++.+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+...      .+....+.+.+....+.+
T Consensus        82 --~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e  158 (184)
T 3ihw_A           82 --FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYE  158 (184)
T ss_dssp             --HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEE
T ss_pred             --eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEE
Confidence              45689999999999998888888888888876531 136899999999998421      122333333332344667


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +||+++.|++++|..+....
T Consensus       159 ~Sa~~~~gv~~lf~~l~~~i  178 (184)
T 3ihw_A          159 TCATYGLNVERVFQDVAQKV  178 (184)
T ss_dssp             EBTTTTBTHHHHHHHHHHHH
T ss_pred             ecCCCCCCHHHHHHHHHHHH
Confidence            99999999999999987654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.83  E-value=2.1e-20  Score=159.36  Aligned_cols=159  Identities=16%  Similarity=0.076  Sum_probs=104.4

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      +...+|+++|.+|||||||+++|++.....  .+..+++..  ...+..+.    .  ...+.+|||||+.+..      
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~----~--~~~l~i~Dt~G~~~~~------   91 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQ--MKTLIVDG----E--RTVLQLWDTAGQERFR------   91 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CE--EEEEEETT----E--EEEEEEEECTTCTTCH------
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeE--EEEEEECC----E--EEEEEEEECCCCcchh------
Confidence            445789999999999999999999876332  222222221  12222111    1  1268999999986542      


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc------Hh-HHHHHHHHHHh
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA------RD-RLQSLTEEILK  250 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------~~-~~~~l~~~l~~  250 (310)
                       ..+..+++.+|++++|+|+++..+++....|...+..+..  .+.|+++|+||+|+.+.      .. ..+...+....
T Consensus        92 -~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~  168 (199)
T 2p5s_A           92 -SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMT  168 (199)
T ss_dssp             -HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred             -hhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccccccccCHHHHHHHHHH
Confidence             2344556789999999999988888888888888876542  36899999999998621      11 01122222223


Q ss_pred             --cCCCccccCccCCHHHHHHHHhhcc
Q 021615          251 --IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       251 --~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                        ..+.++||+++.|+.++|..+....
T Consensus       169 ~~~~~~~~SA~~g~gv~el~~~l~~~i  195 (199)
T 2p5s_A          169 YGALFCETSAKDGSNIVEAVLHLAREV  195 (199)
T ss_dssp             HTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence              3455699999999999999987654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=2.6e-20  Score=157.99  Aligned_cols=161  Identities=12%  Similarity=0.101  Sum_probs=107.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeecc-ceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~-~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..+|+++|.+|||||||+++|++........+  |.... ...+..+.    .  ...+.+|||||+.+..       ..
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~----~--~~~~~l~Dt~G~~~~~-------~~   72 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP--TIEDTYRQVISCDK----S--VCTLQITDTTGSHQFP-------AM   72 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC--CCCEEEEEEEEETT----E--EEEEEEEECCGGGSCH-------HH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcCCCCCcccC--ccccceeEEEEECC----E--EEEEEEEeCCChHHhH-------HH
Confidence            46899999999999999999998754321111  11111 11111111    1  1268999999986542       22


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc--CCCcccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVTS  258 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~--g~~~~sa  258 (310)
                      +..++..+|++++|+|++++.+++....++..+..+.....+.|+++|+||+|+.......+.........  .+.++||
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (199)
T 2gf0_A           73 QRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSA  152 (199)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred             HHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEec
Confidence            33456789999999999987777777777766665433234689999999999975322222333333333  4566999


Q ss_pred             CccCCHHHHHHHHhhccCC
Q 021615          259 ETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~~~  277 (310)
                      +++.|++++|..+......
T Consensus       153 ~~~~gi~~l~~~l~~~~~~  171 (199)
T 2gf0_A          153 KMNYNVKELFQELLTLETR  171 (199)
T ss_dssp             TTTBSHHHHHHHHHHHCSS
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999876644

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.83  E-value=1.1e-20  Score=160.17  Aligned_cols=160  Identities=15%  Similarity=0.080  Sum_probs=109.9

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      +...+|+++|.+|||||||+++|++.... ..+..|+.......+....    ..  ..+.+|||||+.+...       
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~-------   86 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIP-TAYVPTVFENFSHVMKYKN----EE--FILHLWDTAGQEEYDR-------   86 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEETT----EE--EEEEEEEECCSGGGTT-------
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCC-CccCCeeeeeeEEEEEECC----EE--EEEEEEECCCcHHHHH-------
Confidence            34578999999999999999999987632 2333333222222222211    11  1579999999876532       


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc---HhHHHHHHHHHHhcC---
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEA---RDRLQSLTEEILKIG---  252 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~---~~~~~~l~~~l~~~g---  252 (310)
                      ....+++.+|++++|+|++++.+++.. ..|...+..+.   .+.|+++|+||+|+...   ....+...+.....+   
T Consensus        87 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (194)
T 3reg_A           87 LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVA  163 (194)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSC
T ss_pred             HhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCE
Confidence            123456789999999999998888775 66777777654   36899999999998742   111233333334344   


Q ss_pred             CCccccCccCCHHHHHHHHhhccC
Q 021615          253 CDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      +.++||+++.|++++|..+.....
T Consensus       164 ~~~~Sa~~~~gi~~l~~~l~~~i~  187 (194)
T 3reg_A          164 YIEASSVAKIGLNEVFEKSVDCIF  187 (194)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEeecCCCCCHHHHHHHHHHHHH
Confidence            557999999999999999877653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.83  E-value=6.6e-20  Score=154.60  Aligned_cols=158  Identities=23%  Similarity=0.267  Sum_probs=108.7

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC------
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL------  173 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~------  173 (310)
                      ..++|+++|.+|||||||+|+|++..... .+.+++|.........           .++.+|||||+......      
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~i~Dt~G~~~~~~~~~~~~~   90 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVN-----------SKYYFVDLPGYGYAKVSKKERML   90 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEET-----------TTEEEEECCCBSSSCCCHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEEC-----------CcEEEEECCCCccccCChhhHHH
Confidence            35689999999999999999999987433 6667777654443331           26899999997543211      


Q ss_pred             CchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHh
Q 021615          174 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILK  250 (310)
Q Consensus       174 ~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~  250 (310)
                      ...+...+++....+|++++|+|+++....... .+...+..     .+.|+++|+||+|+.+..+   ..+.+.+.+..
T Consensus        91 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~  164 (195)
T 3pqc_A           91 WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKS-----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK  164 (195)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence            012223344444566999999999876554443 34445554     2689999999999986533   22344444444


Q ss_pred             ---cCCCccccCccCCHHHHHHHHhhcc
Q 021615          251 ---IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       251 ---~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                         ..+.++||+++.|++++|+.+....
T Consensus       165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  192 (195)
T 3pqc_A          165 YGEYTIIPTSSVTGEGISELLDLISTLL  192 (195)
T ss_dssp             SCCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCCceEEEecCCCCCHHHHHHHHHHHh
Confidence               2456699999999999999987654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.83  E-value=9e-21  Score=162.99  Aligned_cols=159  Identities=19%  Similarity=0.157  Sum_probs=111.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++.... ..+..|+.......+..+.    ..  ..+.+|||||+.++...       .
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~~-------~   74 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDG----QI--VNLGLWDTAGQEDYSRL-------R   74 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCEEEEEECSS----CE--EEEEEECCCCCCCCCC---------
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeEEEEEEECC----EE--EEEEEEECCCcHHHHHH-------H
Confidence            468999999999999999999987632 3333343332222333221    11  27899999999776432       1


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---------HHHHHHHHHHhc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARD---------RLQSLTEEILKI  251 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---------~~~~l~~~l~~~  251 (310)
                      ..+++.+|++++|+|++++.+++... .|..++..+.+   +.|+++|+||+|+.....         ..++..+....+
T Consensus        75 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~  151 (212)
T 2j0v_A           75 PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI  151 (212)
T ss_dssp             CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc
Confidence            23567899999999999888887775 68888877643   789999999999976432         122333333333


Q ss_pred             ---CCCccccCccCCHHHHHHHHhhccCC
Q 021615          252 ---GCDKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       252 ---g~~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                         .+.++||+++.|++++|..+......
T Consensus       152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (212)
T 2j0v_A          152 GAAAYIECSSKTQQNVKAVFDTAIKVVLQ  180 (212)
T ss_dssp             TCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             CCceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence               45669999999999999998776644

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.83  E-value=2.5e-21  Score=167.17  Aligned_cols=163  Identities=14%  Similarity=0.075  Sum_probs=107.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      ...+|+++|.+|||||||+|+|++.....  .....++...  ..+....   ..  ...+.+|||||+.+....    .
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~---~~--~~~~~l~Dt~G~~~~~~~----~   78 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHP--VTFLDDQ---GN--VIKFNVWDTAGQEKKAVL----K   78 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEE--EEEEBTT---SC--EEEEEEEEECSGGGTSCC----C
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEE--EEEEeCC---Cc--EEEEEEEecCCchhhchH----H
Confidence            34689999999999999999999776332  1111122111  1111110   00  026899999998765332    1


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-HHHHHHHHhcC--CCc
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKIG--CDK  255 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~l~~~l~~~g--~~~  255 (310)
                         ..++..+|++++|+|+++..++++...|..++..+..  .+.|+++|+||+|+....+.. +.........+  +.+
T Consensus        79 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  153 (218)
T 4djt_A           79 ---DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG--NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFE  153 (218)
T ss_dssp             ---HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC--SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEE
T ss_pred             ---HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEE
Confidence               2345689999999999998888888888888776543  358999999999997653222 22222333333  555


Q ss_pred             cccCccCCHHHHHHHHhhccCCcc
Q 021615          256 VTSETELSSEDAVKSLSTEGGEAD  279 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~~~~~  279 (310)
                      +||+++.|++++|..+........
T Consensus       154 ~Sa~~g~gv~~l~~~l~~~~~~~~  177 (218)
T 4djt_A          154 ISAKTAHNFGLPFLHLARIFTGRP  177 (218)
T ss_dssp             EBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred             EecCCCCCHHHHHHHHHHHHhccc
Confidence            999999999999999987664433

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=2.6e-21  Score=163.86  Aligned_cols=159  Identities=14%  Similarity=0.064  Sum_probs=109.9

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCC--CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA--DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~--~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      ...++|+|+|.+|||||||+++|++......  +..+++.......+...        ...+.+|||||+.+.       
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------~~~~~i~Dt~G~~~~-------   85 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK--------RVKLQIWDTAGQERY-------   85 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTT--------TEEEEEECHHHHHHC-------
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCE--------EEEEEEEeCCChHHH-------
Confidence            4567899999999999999999998763221  11112221111111111        126899999997544       


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCC
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCD  254 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~  254 (310)
                      ......+++.+|++++|+|+++..+++....|..++..+..  .+.|+++|+||+|+..... ..+........  +.+.
T Consensus        86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  163 (191)
T 3dz8_A           86 RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFF  163 (191)
T ss_dssp             HHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEE
Confidence            22344567799999999999998888888888888887643  4689999999999864321 11222222232  3456


Q ss_pred             ccccCccCCHHHHHHHHhhcc
Q 021615          255 KVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ++|++++.|+.++|..+....
T Consensus       164 ~~Sa~~~~gi~~l~~~l~~~i  184 (191)
T 3dz8_A          164 EASAKENISVRQAFERLVDAI  184 (191)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHH
Confidence            699999999999999987654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.83  E-value=9.8e-21  Score=158.92  Aligned_cols=154  Identities=16%  Similarity=0.151  Sum_probs=105.6

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|||||||+++|++.+...   ...|.......+....        ..+.+|||||+.+...       .
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~-------~   81 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNEVVH---TSPTIGSNVEEIVINN--------TRFLMWDIGGQESLRS-------S   81 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTSCEE---EECCSSSSCEEEEETT--------EEEEEEEESSSGGGTC-------G
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCc---cCCcCceeeEEEEECC--------EEEEEEECCCCHhHHH-------H
Confidence            35689999999999999999999876411   0111112222333221        2789999999976532       2


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-----hc--CC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----KI--GC  253 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-----~~--g~  253 (310)
                      +..+++.+|++++|+|+++..+++....++..+.... ...+.|+++|+||+|+..... .+++.+.+.     ..  .+
T Consensus        82 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~  159 (181)
T 2h17_A           82 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQWHI  159 (181)
T ss_dssp             GGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEE
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCcccCCC-HHHHHHHhCcccccCCceEE
Confidence            2345678999999999999888888777766665421 124789999999999976422 233333332     11  34


Q ss_pred             CccccCccCCHHHHHHHHhhc
Q 021615          254 DKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~  274 (310)
                      .++||+++.|++++|+.+...
T Consensus       160 ~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          160 QACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             EECBTTTTBTHHHHHHHHHTC
T ss_pred             EEccCCCCcCHHHHHHHHHhh
Confidence            569999999999999998653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.83  E-value=6.4e-21  Score=159.29  Aligned_cols=158  Identities=17%  Similarity=0.127  Sum_probs=102.4

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|+|||||+++|++.... ..+..|+.......+..    ....  ..+.+|||||+.+....       
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~----~~~~--~~~~i~Dt~G~~~~~~~-------   72 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVV----NGAT--VNLGLWDTAGQEDYNRL-------   72 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC-------------CEEECCCC-CTTTTT-------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCeeeeeEEEEEEE----CCEE--EEEEEEECCCChhhhhh-------
Confidence            3478999999999999999999987532 23333332211111111    1111  26789999998765321       


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-----------HHHHHHHH
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-----------LQSLTEEI  248 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-----------~~~l~~~l  248 (310)
                      ...+++.+|++++|+|++++.+++... .|..++..+..   +.|+++|+||+|+.+....           .++..+..
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~  149 (182)
T 3bwd_D           73 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK  149 (182)
T ss_dssp             GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH
T ss_pred             HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHH
Confidence            224567899999999999888887776 67788877642   7899999999998764331           12222222


Q ss_pred             Hhc---CCCccccCccCCHHHHHHHHhhcc
Q 021615          249 LKI---GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       249 ~~~---g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ...   .+.++||+++.|++++|+.+....
T Consensus       150 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          150 KLIGAPAYIECSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             HHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            333   456699999999999999987654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.83  E-value=1.9e-20  Score=153.50  Aligned_cols=158  Identities=15%  Similarity=0.124  Sum_probs=106.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .+|+++|.+|||||||+++|++..... .+..++.......+....    .  ...+.+|||||+.+..    .   ...
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~----~--~~~~~l~D~~G~~~~~----~---~~~   69 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDS----S--PSVLEILDTAGTEQFA----S---MRD   69 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETT----E--EEEEEEEECCCTTCCH----H---HHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECC----E--EEEEEEEECCCchhhH----H---HHH
Confidence            579999999999999999999876332 222332222222222221    1  1258999999986542    2   233


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~sa~  259 (310)
                      .+++.+|++++|+|++++.+++....+..++..+.. ..+.|+++|+||+|+....+. .+...+....  ..+.++|++
T Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  148 (167)
T 1kao_A           70 LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAK  148 (167)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTT
T ss_pred             HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCC
Confidence            456789999999999988787777777777765432 136899999999998643221 1222222232  345668999


Q ss_pred             ccCCHHHHHHHHhhcc
Q 021615          260 TELSSEDAVKSLSTEG  275 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~  275 (310)
                      ++.|++++++.+....
T Consensus       149 ~~~gi~~l~~~l~~~~  164 (167)
T 1kao_A          149 SKTMVDELFAEIVRQM  164 (167)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            9999999999986543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.83  E-value=4.5e-20  Score=154.58  Aligned_cols=158  Identities=18%  Similarity=0.133  Sum_probs=107.6

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+|+|++.... ..+..++.......+....    ..  ..+.+|||||+.+...    +.   
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~----~~---   83 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPTIEDSYLKHTEIDN----QW--AILDVLDTAGQEEFSA----MR---   83 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETT----EE--EEEEEEECCSCGGGCS----SH---
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceeEEEEEeCC----cE--EEEEEEECCCchhhHH----HH---
Confidence            468999999999999999999976432 2333333322222222221    11  1577899999876532    22   


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVT  257 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~s  257 (310)
                      ..+++.+|++++|+|++++.+++....|...+..+.. ..+.|+++|+||+|+.+..    +....+.+.+. ..+.++|
T Consensus        84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~S  161 (183)
T 3kkq_A           84 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKVTRDQGKEMATKYN-IPYIETS  161 (183)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT-CCEEEEB
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC-CeEEEec
Confidence            3445689999999999998888888778777755321 2468999999999987532    22333333332 4566699


Q ss_pred             cC-ccCCHHHHHHHHhhcc
Q 021615          258 SE-TELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~-~~~gi~~l~~~l~~~~  275 (310)
                      ++ ++.|++++|..+....
T Consensus       162 a~~~~~~v~~l~~~l~~~i  180 (183)
T 3kkq_A          162 AKDPPLNVDKTFHDLVRVI  180 (183)
T ss_dssp             CSSSCBSHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            99 9999999999986543

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.83  E-value=1.2e-21  Score=185.05  Aligned_cols=166  Identities=34%  Similarity=0.559  Sum_probs=97.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCC-----CCCC-----------CccCCCceEEEeCCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD-----PTLG-----------AEKYSSEATLADLPG  166 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~-----~~~~-----------~~~~~~~~~i~DtPG  166 (310)
                      .+|+++|.||||||||+|+|++....++++||||..++.+.+...     ..+.           ...-..++.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            379999999999999999999998666899999999998864321     0000           000012689999999


Q ss_pred             CCccccCCchHHHHHHHHhhhcCEEEEecccCCC-----------CcHHHHHHHHHHHHhcC------------------
Q 021615          167 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE-----------NPVNDYRTVKEELRMYN------------------  217 (310)
Q Consensus       167 ~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~-----------~~~~~~~~~~~~l~~~~------------------  217 (310)
                      +.++++..++++..|+.+++.||++++|+|+++.           ++.++++.+..||..++                  
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~~  160 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQ  160 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSS
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence            9988777778888888889999999999999886           67777766666665430                  


Q ss_pred             ------------------------------C-------------------CCCCCCEEEEEeCCCCCCcHhHHHHHHHHH
Q 021615          218 ------------------------------P-------------------DYLERPFIVVLNKIDLPEARDRLQSLTEEI  248 (310)
Q Consensus       218 ------------------------------~-------------------~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l  248 (310)
                                                    .                   ....+|+++|+||+|+. ..+..+.+.+.+
T Consensus       161 ~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~~~~l~~l~~~~  239 (397)
T 1wxq_A          161 KIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA-SDEQIKRLVREE  239 (397)
T ss_dssp             CCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-CHHHHHHHHHHH
T ss_pred             CccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-chHHHHHHHHHH
Confidence                                          0                   00248999999999988 444456666655


Q ss_pred             Hhc--CCCccccCccCCHHHHHH
Q 021615          249 LKI--GCDKVTSETELSSEDAVK  269 (310)
Q Consensus       249 ~~~--g~~~~sa~~~~gi~~l~~  269 (310)
                      ...  .+..+||+.+.++.++++
T Consensus       240 ~~~~~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          240 EKRGYIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HHTTCEEEEECHHHHHHHHSCSS
T ss_pred             hhcCCcEEEEeccchhhHHHHHh
Confidence            532  355689998888776544

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.83  E-value=1e-20  Score=159.11  Aligned_cols=156  Identities=19%  Similarity=0.202  Sum_probs=108.1

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      +...+|+++|.+|||||||+++|++..  ...+. .|.......+....        ..+.+|||||+.+...       
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~~--------~~~~~~Dt~G~~~~~~-------   77 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGFNIKTLEHRG--------FKLNIWDVGGQKSLRS-------   77 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSEEEEEEEETT--------EEEEEEEECCSHHHHT-------
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCccceEEEEECC--------EEEEEEECCCCHhHHH-------
Confidence            345789999999999999999999876  22221 12222233333321        2789999999865422       


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------hcC
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIG  252 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~~g  252 (310)
                      .+..+++.+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+.+... .+++.+.+.       ...
T Consensus        78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~  155 (186)
T 1ksh_A           78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE-RLAGATLLIFANKQDLPGALS-CNAIQEALELDSIRSHHWR  155 (186)
T ss_dssp             TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEE
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh-hcCCCcEEEEEeCccCCCCCC-HHHHHHHhChhhccCCceE
Confidence            22345678999999999999888887777766665431 124689999999999976532 234444332       123


Q ss_pred             CCccccCccCCHHHHHHHHhhcc
Q 021615          253 CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +.++||+++.|++++++.+....
T Consensus       156 ~~~~Sa~~~~gi~~l~~~l~~~i  178 (186)
T 1ksh_A          156 IQGCSAVTGEDLLPGIDWLLDDI  178 (186)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHH
Confidence            55699999999999999987655

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.83  E-value=4.1e-20  Score=155.91  Aligned_cols=159  Identities=20%  Similarity=0.147  Sum_probs=105.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++.... ..+..|+.......+....    ..  ..+.+|||||+.+...       ..
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~-------~~   86 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDG----ET--CLLDILDTAGQEEYSA-------MR   86 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETT----EE--EEEEEEECCC---------------
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcCCCc-cccCCccceEEEEEEEECC----EE--EEEEEEECCChHHHHH-------HH
Confidence            368999999999999999999987532 3344444332222332221    11  1589999999865422       23


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCccccC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa~  259 (310)
                      ..+++.+|++++|+|+++..++++...|..++..+.. ..+.|+++|+||+|+.......++..+....  +.+.++|++
T Consensus        87 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~  165 (190)
T 3con_A           87 DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAK  165 (190)
T ss_dssp             ---CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCC
Confidence            3556789999999999988888888778777776532 1368999999999987532222333333333  345669999


Q ss_pred             ccCCHHHHHHHHhhcc
Q 021615          260 TELSSEDAVKSLSTEG  275 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~  275 (310)
                      ++.|+.+++..+....
T Consensus       166 ~~~gi~~l~~~l~~~~  181 (190)
T 3con_A          166 TRQGVEDAFYTLVREI  181 (190)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999987655

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.83  E-value=1.2e-20  Score=161.21  Aligned_cols=165  Identities=15%  Similarity=0.059  Sum_probs=109.9

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      ..+..++|+++|.+|||||||+|+|++..... .+..|+.......+....    ..  ..+.+|||||+.+....    
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~~----   88 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSE-GYDPTVENTYSKIVTLGK----DE--FHLHLVDTAGQDEYSIL----   88 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCS-CCCCCSEEEEEEEEC--------C--EEEEEEEECCCCTTCCC----
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEECC----EE--EEEEEEECCCccchHHH----
Confidence            33456789999999999999999999876442 333333322222222211    11  26899999998766432    


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCC
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCD  254 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~  254 (310)
                         ...+++.+|++++|+|+++..+++.+..|...+..+.. ..+.|+++|+||+|+...... ..........  ..+.
T Consensus        89 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~  164 (201)
T 3oes_A           89 ---PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFM  164 (201)
T ss_dssp             ---CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred             ---HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEE
Confidence               22456789999999999998888888888888876432 236899999999998743221 1222222222  3456


Q ss_pred             ccccCccCCHHHHHHHHhhccCC
Q 021615          255 KVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      ++||+++.|++++|..+.....+
T Consensus       165 ~~Sa~~~~~v~~l~~~l~~~i~~  187 (201)
T 3oes_A          165 ESSARENQLTQGIFTKVIQEIAR  187 (201)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHh
Confidence            69999999999999998776533

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.83  E-value=8.5e-21  Score=169.39  Aligned_cols=156  Identities=22%  Similarity=0.289  Sum_probs=113.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC--chHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~--~~l~~  179 (310)
                      .++|+++|.+|||||||+|+|++....++++|++|.....+.+....        ..+.+|||||+.+.....  +.+.+
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--------~~~~l~DtpG~~~~~~~~~~e~v~~   76 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--------YTINLIDLPGTYSLGYSSIDEKIAR   76 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--------EEEEEEECCCCSSCCSSSHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--------eEEEEEECCCcCccCCCCHHHHHHH
Confidence            36799999999999999999999887778899999888777776432        279999999997654321  22334


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~~~  256 (310)
                      .++.. ..+|++++|+|+++...   ...+..++..     .+.|+++|+||+|+.....   ..+.+.+.+ .+.+.++
T Consensus        77 ~~~~~-~~~d~ii~V~D~t~~~~---~~~~~~~l~~-----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l-g~~vi~~  146 (258)
T 3a1s_A           77 DYLLK-GDADLVILVADSVNPEQ---SLYLLLEILE-----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVFT  146 (258)
T ss_dssp             HHHHH-SCCSEEEEEEETTSCHH---HHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH-CSCEEEC
T ss_pred             HHHhh-cCCCEEEEEeCCCchhh---HHHHHHHHHh-----cCCCEEEEEECcCCCCccchHHHHHHHHHHc-CCCEEEE
Confidence            44332 57999999999987532   2335555654     3789999999999854211   133444333 2455669


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|+++++..+....
T Consensus       147 SA~~g~gi~el~~~i~~~~  165 (258)
T 3a1s_A          147 SSVTGEGLEELKEKIVEYA  165 (258)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             EeeCCcCHHHHHHHHHHHh
Confidence            9999999999999987643

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.83  E-value=6.1e-20  Score=155.31  Aligned_cols=157  Identities=18%  Similarity=0.229  Sum_probs=100.4

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC---Cc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL---GK  175 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~--~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~---~~  175 (310)
                      ..++|+++|.+|||||||+|+|++..  ....+.+++|.......+.           ..+.+|||||+.+....   ..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~l~Dt~G~~~~~~~~~~~~   90 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-----------DELHFVDVPGYGFAKVSKSERE   90 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-----------TTEEEEECCCBCCCSSCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-----------CcEEEEECCCCCccccCHHHHH
Confidence            35789999999999999999999876  2336666777654443331           26899999997554221   01


Q ss_pred             ---hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---HHHHHHHHH
Q 021615          176 ---GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEIL  249 (310)
Q Consensus       176 ---~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~l~~~l~  249 (310)
                         .+...+++....+|++++|+|+++..+..+.. +...+..     .+.|+++|+||+|+.+..+.   .+++.+.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~  164 (195)
T 1svi_A           91 AWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN  164 (195)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHc
Confidence               11223333334449999999999877766543 3344544     36899999999999875432   233333333


Q ss_pred             h---cCCCccccCccCCHHHHHHHHhhc
Q 021615          250 K---IGCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       250 ~---~g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                      .   ..+.++|++++.|++++++.+...
T Consensus       165 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  192 (195)
T 1svi_A          165 IDPEDELILFSSETKKGKDEAWGAIKKM  192 (195)
T ss_dssp             CCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccCCCceEEEEccCCCCHHHHHHHHHHH
Confidence            2   235569999999999999998654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.83  E-value=7.4e-21  Score=162.57  Aligned_cols=161  Identities=14%  Similarity=0.044  Sum_probs=107.1

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ....+|+++|.+|||||||+++|++........+..+.......+....    .  ...+.+|||||+.+....      
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~l~l~Dt~G~~~~~~~------   90 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGG----K--TVKLQIWDTAGQERFRSV------   90 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETT----E--EEEEEEECCTTHHHHSCC------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECC----e--eeEEEEEcCCCcHhHHHH------
Confidence            4567899999999999999999998765443333333332233333221    0  127899999998654221      


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~  256 (310)
                       +..+++.+|++++|+|++++.+++....|..++..+..  .+.|+++|+||+|+..... ...+..+.....+  +.++
T Consensus        91 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  167 (200)
T 2o52_A           91 -TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLET  167 (200)
T ss_dssp             -CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred             -HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEE
Confidence             23456789999999999998888888888887776543  4689999999999964321 1223333334444  5568


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|++++|..+....
T Consensus       168 SA~~g~gi~~l~~~l~~~i  186 (200)
T 2o52_A          168 SALTGENVEEAFLKCARTI  186 (200)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999999987655

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.6e-20  Score=163.14  Aligned_cols=163  Identities=15%  Similarity=0.085  Sum_probs=108.6

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ...++|+|+|.+|||||||+++|++........+..+.......+....    ..  ..+.+|||||+.++...      
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~~------   78 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEG----KR--IKAQIWDTAGQERYRAI------   78 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETT----EE--EEEEEECCTTTTTTTCC------
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC----EE--EEEEEEECCCccchhhh------
Confidence            3457899999999999999999998875443333333322222333221    11  26899999998765332      


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~  256 (310)
                       +..+++.+|++++|+|++++.+++....|..++..+..  .+.|+++|+||+|+....+ ..++..+.....+  +.++
T Consensus        79 -~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  155 (223)
T 3cpj_B           79 -TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTET  155 (223)
T ss_dssp             -CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred             -HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence             22456789999999999998888888888888876542  3689999999999965321 1223333333344  4568


Q ss_pred             ccCccCCHHHHHHHHhhccCC
Q 021615          257 TSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      ||+++.|++++|..+.....+
T Consensus       156 Sa~~~~gi~~l~~~l~~~i~~  176 (223)
T 3cpj_B          156 SALNSENVDKAFEELINTIYQ  176 (223)
T ss_dssp             CCC-CCCHHHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999998776543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.82  E-value=1.2e-19  Score=153.31  Aligned_cols=165  Identities=19%  Similarity=0.115  Sum_probs=104.0

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCc----eeeccceEeeCCC---CCCCccCCCceEEEeCCCCCccccC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFT----TLMPNLGRLDGDP---TLGAEKYSSEATLADLPGLIEGAHL  173 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~t----T~~~~~~~v~~~~---~~~~~~~~~~~~i~DtPG~~~~~~~  173 (310)
                      ...+|+++|.+|||||||++.+.+...........    ...++.+.-....   ......  ..+.+|||||+.+... 
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~-   89 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK--TRFHLYTVPGQVFYNA-   89 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCE--EEEEEEECCSCCSCSH-
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCc--eEEEEEeCCChHHHHH-
Confidence            34689999999999999999888765332110000    0111221111110   111111  2689999999876522 


Q ss_pred             CchHHHHHHHHhhhcCEEEEecccCCCCcHH---HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh
Q 021615          174 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVN---DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK  250 (310)
Q Consensus       174 ~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~---~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~  250 (310)
                            .+..+++.+|++++|+|++++...+   .+..+...+........+.|+++|+||+|+.+. ...+++.+.+..
T Consensus        90 ------~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~  162 (198)
T 3t1o_A           90 ------SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA-LPVEMVRAVVDP  162 (198)
T ss_dssp             ------HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC-CCHHHHHHHHCT
T ss_pred             ------HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc-cCHHHHHHHHHh
Confidence                  3334678999999999998543222   223333334443333457999999999999765 223455555555


Q ss_pred             cCC---CccccCccCCHHHHHHHHhhcc
Q 021615          251 IGC---DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       251 ~g~---~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .++   .++||+++.|++++|..+....
T Consensus       163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i  190 (198)
T 3t1o_A          163 EGKFPVLEAVATEGKGVFETLKEVSRLV  190 (198)
T ss_dssp             TCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred             cCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence            544   5599999999999999987655

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.82  E-value=7.2e-21  Score=182.08  Aligned_cols=157  Identities=19%  Similarity=0.249  Sum_probs=98.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~  179 (310)
                      .++|++||.||||||||+|+|++....+ .+++++|.+...+.+....        ..+.+|||||+..... ....+..
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~~~~   74 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--------YDFNLIDTGGIDIGDEPFLAQIRQ   74 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--------SCCEEEC---------CHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--------ceEEEEECCCCCCcchhHHHHHHH
Confidence            3689999999999999999999987664 8899999887776665432        2799999999964321 1123444


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC---CCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g---~~~~  256 (310)
                      .+..+++.||++++|+|+.++.+..+. .+.+.+..     .++|+++|+||+|+.......   . .+..++   +..+
T Consensus        75 ~~~~~~~~ad~il~vvD~~~~~~~~d~-~~~~~l~~-----~~~pvilv~NK~D~~~~~~~~---~-~~~~lg~~~~~~i  144 (436)
T 2hjg_A           75 QAEIAMDEADVIIFMVNGREGVTAADE-EVAKILYR-----TKKPVVLAVNKLDNTEMRANI---Y-DFYSLGFGEPYPI  144 (436)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHTT-----CCSCEEEEEECCCC-----CC---C-SSGGGSSCCCEEC
T ss_pred             HHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECccCccchhhH---H-HHHHcCCCCeEEE
Confidence            556678899999999999987666553 34444543     478999999999987542211   1 112333   4458


Q ss_pred             ccCccCCHHHHHHHHhhccC
Q 021615          257 TSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~~  276 (310)
                      ||+++.|+.++++.+.....
T Consensus       145 SA~~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          145 SGTHGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             BTTTTBTHHHHHHHHHHTGG
T ss_pred             eCcCCCChHHHHHHHHHhcC
Confidence            99999999999999876653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.82  E-value=8.2e-21  Score=163.86  Aligned_cols=168  Identities=17%  Similarity=0.092  Sum_probs=107.2

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCC----CccCCCceEEEeCCCCCccccCCc
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG----AEKYSSEATLADLPGLIEGAHLGK  175 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~----~~~~~~~~~i~DtPG~~~~~~~~~  175 (310)
                      ....+|+|+|.+|||||||+++|++........+..+.+.....+.......    .......+.+|||||+.+.     
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----   97 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF-----   97 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH-----
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH-----
Confidence            4457899999999999999999998764221111111111111222111000    0000126899999997543     


Q ss_pred             hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--C
Q 021615          176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--G  252 (310)
Q Consensus       176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g  252 (310)
                        ...+..+++.+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+..... ..+...+.....  .
T Consensus        98 --~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~  174 (217)
T 2f7s_A           98 --RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY-CENPDIVLIGNKADLPDQREVNERQARELADKYGIP  174 (217)
T ss_dssp             --HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCT-TTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC
T ss_pred             --HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc
Confidence              33445667899999999999987777776666655543221 14689999999999975322 123333333333  4


Q ss_pred             CCccccCccCCHHHHHHHHhhcc
Q 021615          253 CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       253 ~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +.++||+++.|++++|..+....
T Consensus       175 ~~~~Sa~~g~gi~~l~~~l~~~i  197 (217)
T 2f7s_A          175 YFETSAATGQNVEKAVETLLDLI  197 (217)
T ss_dssp             EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            55699999999999999987655

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.82  E-value=9e-21  Score=181.40  Aligned_cols=162  Identities=16%  Similarity=0.181  Sum_probs=110.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch---
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG---  176 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~---  176 (310)
                      ...+|+++|.||||||||+|+|++.+.. ++++++||.+.....+..+.        ..+.+|||||+.+.......   
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~e~  245 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--------QEFVIVDTAGMRKKGKVYETTEK  245 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--------EEEEETTHHHHTCBTTBCCCCSH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--------eEEEEEECCCcCcCccccchHHH
Confidence            3478999999999999999999998765 48889999987776665443        26899999999665432111   


Q ss_pred             H-HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHH----HHHHHh
Q 021615          177 L-GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSL----TEEILK  250 (310)
Q Consensus       177 l-~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l----~~~l~~  250 (310)
                      + ......+++.+|++++|+|++++.+.++.. |...+..     .++|+++|+||+|+.+..+ ..+++    .+.+..
T Consensus       246 ~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~-~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~  319 (436)
T 2hjg_A          246 YSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-IAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF  319 (436)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH-HHHHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhccc
Confidence            1 112245678999999999999988877764 5555554     4789999999999976432 12233    333322


Q ss_pred             ---cCCCccccCccCCHHHHHHHHhhccC
Q 021615          251 ---IGCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       251 ---~g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                         ..+.++||+++.|+.++|..+.....
T Consensus       320 ~~~~~~~~~SA~tg~~v~~l~~~i~~~~~  348 (436)
T 2hjg_A          320 LDYAPILFMSALTKKRIHTLMPAIIKASE  348 (436)
T ss_dssp             GTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             CCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence               24556999999999999998876543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.82  E-value=3.8e-20  Score=157.24  Aligned_cols=158  Identities=19%  Similarity=0.154  Sum_probs=107.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|||||||+++|++..... .+..|+.......+..+.    .  ...+.+|||||+.+     ..   .
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~----~--~~~~~l~Dt~G~~~-----~~---~   91 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW-EYDPTLESTYRHQATIDD----E--VVSMEILDTAGQED-----TI---Q   91 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETT----E--EEEEEEEECCCCCC-----CH---H
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCCCCceEEEEEEECC----E--EEEEEEEECCCCCc-----cc---c
Confidence            34689999999999999999999876432 222222221112222111    1  12689999999875     12   2


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV  256 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~  256 (310)
                      +..+++.+|++++|+|++++.+++....|..++..+.. ..+.|+++|+||+|+....    +....+.+.+ ...+.++
T Consensus        92 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~  169 (196)
T 2atv_A           92 REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEEGEKLATEL-ACAFYEC  169 (196)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TSEEEEC
T ss_pred             hhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHh-CCeEEEE
Confidence            34456789999999999998888888777777766432 1368999999999997531    2222333222 2345679


Q ss_pred             ccCccC-CHHHHHHHHhhcc
Q 021615          257 TSETEL-SSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~-gi~~l~~~l~~~~  275 (310)
                      ||+++. |+.++|..+....
T Consensus       170 Sa~~g~~gi~~l~~~l~~~i  189 (196)
T 2atv_A          170 SACTGEGNITEIFYELCREV  189 (196)
T ss_dssp             CTTTCTTCHHHHHHHHHHHH
T ss_pred             CCCcCCcCHHHHHHHHHHHH
Confidence            999999 9999999987654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.82  E-value=1.8e-20  Score=157.71  Aligned_cols=157  Identities=22%  Similarity=0.377  Sum_probs=112.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC--chHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~--~~l~~~  180 (310)
                      .+|+++|.+|||||||+++|++....+..++++|.....+.+....        ..+.+|||||+.+.....  ..+...
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~~~   79 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--------EKFKVVDLPGVYSLTANSIDEIIARD   79 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--------EEEEEEECCCCSCCSSSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--------cEEEEEECCCcCccccccHHHHHHHH
Confidence            5799999999999999999999775567778888877777766442        278999999998763211  123333


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH---hHHHHHHHHHHhcCCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~~~l~~~l~~~g~~~~s  257 (310)
                      ++.. ..+|++++|+|.++   .+....|..++..     .+.|+++|+||+|+....   ...+.+.+.+ ...+.++|
T Consensus        80 ~~~~-~~~~~~i~v~d~~~---~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~S  149 (188)
T 2wjg_A           80 YIIN-EKPDLVVNIVDATA---LERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL-GVKVVPLS  149 (188)
T ss_dssp             HHHH-HCCSEEEEEEEGGG---HHHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECB
T ss_pred             HHhc-cCCCEEEEEecchh---HHHHHHHHHHHHh-----cCCCEEEEEEhhhccccccchHHHHHHHHHh-CCCeEEEE
Confidence            3221 35899999999875   4445556666654     368999999999985432   1233444333 24566799


Q ss_pred             cCccCCHHHHHHHHhhccCC
Q 021615          258 SETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~~~  277 (310)
                      ++++.|++++|..+......
T Consensus       150 a~~~~~v~~l~~~i~~~~~~  169 (188)
T 2wjg_A          150 AAKKMGIEELKKAISIAVKD  169 (188)
T ss_dssp             GGGTBSHHHHHHHHHHHHTT
T ss_pred             ecCCCCHHHHHHHHHHHHHh
Confidence            99999999999998776644

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.82  E-value=3e-20  Score=157.92  Aligned_cols=155  Identities=20%  Similarity=0.199  Sum_probs=102.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|||||||+++|++.... ..  .+|.......+....        ..+.+|||||+.+...    +   
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~----~---   89 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN--------ICFTVWDVGGQDKIRP----L---   89 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEETT--------EEEEEEECC-----CT----T---
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEECC--------EEEEEEECCCCHhHHH----H---
Confidence            3468999999999999999999876521 11  112222222233221        2789999999976522    2   


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cCC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGC  253 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g~  253 (310)
                      +..+++.+|++++|+|++++.+++....++..+.... ...+.|+++|+||+|+.+... .+++.+.+..       ..+
T Consensus        90 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~  167 (192)
T 2b6h_A           90 WRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQED-ELRDAVLLVFANKQDMPNAMP-VSELTDKLGLQHLRSRTWYV  167 (192)
T ss_dssp             HHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEE
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhccc-ccCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEE
Confidence            2345678999999999999888877776666654321 123689999999999976522 2334433321       124


Q ss_pred             CccccCccCCHHHHHHHHhhcc
Q 021615          254 DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .++||+++.|++++|..+....
T Consensus       168 ~~~SA~~g~gi~~l~~~l~~~i  189 (192)
T 2b6h_A          168 QATCATQGTGLYDGLDWLSHEL  189 (192)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHT
T ss_pred             EECcCCCcCCHHHHHHHHHHHH
Confidence            5699999999999999987654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.82  E-value=1.6e-20  Score=157.25  Aligned_cols=159  Identities=18%  Similarity=0.118  Sum_probs=107.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++.... ..+..|+.......+....    ..  ..+.+|||||+.+....       .
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~~-------~   70 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDG----KP--VNLGLWDTAGQEDYDRL-------R   70 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETT----EE--EEEEEECCCCSGGGTTT-------G
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECC----EE--EEEEEEECCCCHhHHHH-------H
Confidence            357999999999999999999976532 2233333222222222111    11  26789999999765321       1


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-------------HHHHHH
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEE  247 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~l~~~  247 (310)
                      ..+++.+|++++|+|++++.+++... .|...+..+.+   +.|+++|+||+|+.......             ++..+.
T Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  147 (186)
T 1mh1_A           71 PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM  147 (186)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             HHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHH
Confidence            23467899999999999887777775 57777776543   78999999999997643211             122222


Q ss_pred             HHhc---CCCccccCccCCHHHHHHHHhhccCC
Q 021615          248 ILKI---GCDKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       248 l~~~---g~~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      ....   .+.++||+++.|++++|..+.....+
T Consensus       148 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          148 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             HHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence            3333   34569999999999999998776543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.82  E-value=2.6e-20  Score=159.76  Aligned_cols=157  Identities=18%  Similarity=0.134  Sum_probs=109.2

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|||||||+++|++... ...+..|+.......+..+..    .  ..+.+|||||+.+...       .
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~----~--~~l~i~Dt~G~~~~~~-------~   94 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK----P--VNLGLWDTAGLEDYDR-------L   94 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-C----E--EEEEEEEECCSGGGTT-------T
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCE----E--EEEEEEECCCchhhHH-------H
Confidence            457899999999999999999997653 233444444333333333211    1  1567999999976532       1


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-------------HHHHH
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTE  246 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~l~~  246 (310)
                      +..+++.+|++++|+|+++..+++... .|...+..+.   .+.|+++|+||+|+.......             ++...
T Consensus        95 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  171 (204)
T 4gzl_A           95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA  171 (204)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH
Confidence            223567899999999999988888775 6777777654   378999999999997653311             12222


Q ss_pred             HHHhcC---CCccccCccCCHHHHHHHHhhc
Q 021615          247 EILKIG---CDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       247 ~l~~~g---~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                      .....+   +.++||+++.|++++|..+...
T Consensus       172 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~  202 (204)
T 4gzl_A          172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRA  202 (204)
T ss_dssp             HHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence            333444   5569999999999999998654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.82  E-value=3.7e-20  Score=178.16  Aligned_cols=162  Identities=17%  Similarity=0.193  Sum_probs=112.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC----Cc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL----GK  175 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~----~~  175 (310)
                      ...+|+++|.+|+|||||+|+|++.+.. ++++++||.+.....+....        ..+.+|||||+.+....    ..
T Consensus       194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~e~  265 (456)
T 4dcu_A          194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--------QEFVIVDTAGMRKKGKVYETTEK  265 (456)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--------EEEEETTGGGTTTBTTBCCCCSH
T ss_pred             ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--------ceEEEEECCCCCcCcccchHHHH
Confidence            4578999999999999999999987644 48899999988777776543        27999999998664321    12


Q ss_pred             hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-hHHHHHHHHHHh----
Q 021615          176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK----  250 (310)
Q Consensus       176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~l~~~l~~----  250 (310)
                      ......+.+++.||++++|+|+++....++ ..+...+..     .++|+++|+||+|+.+.. ...+++.+.+..    
T Consensus       266 ~~~~~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  339 (456)
T 4dcu_A          266 YSVLRALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF  339 (456)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH-----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhccc
Confidence            222234567889999999999998666554 445555654     478999999999997542 223333333332    


Q ss_pred             ---cCCCccccCccCCHHHHHHHHhhccC
Q 021615          251 ---IGCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       251 ---~g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                         ..+.++||+++.|++++|..+.....
T Consensus       340 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~~  368 (456)
T 4dcu_A          340 LDYAPILFMSALTKKRIHTLMPAIIKASE  368 (456)
T ss_dssp             GTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence               34566999999999999999876543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.81  E-value=2.4e-20  Score=161.21  Aligned_cols=157  Identities=17%  Similarity=0.143  Sum_probs=97.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++.... ..+..|+.......+....    ..  ..+.+|||||+.+...       ..
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~l~l~Dt~G~~~~~~-------~~   99 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKG----KP--VHLHIWDTAGQDDYDR-------LR   99 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETT----EE--EEEEEEEC-----------------
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECC----EE--EEEEEEECCCchhhhH-------HH
Confidence            468999999999999999999986532 2233333222222222211    11  2689999999876522       22


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-------------HHHHHH
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEE  247 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~l~~~  247 (310)
                      ..++..+|++++|+|++++.+++... .|..++..+.   .+.|+++|+||+|+.......             ++..+.
T Consensus       100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  176 (214)
T 2j1l_A          100 PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEM  176 (214)
T ss_dssp             -----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHH
Confidence            23466899999999999887777775 6777777654   368999999999997653211             122333


Q ss_pred             HHhcC---CCccccCccCCHHHHHHHHhhcc
Q 021615          248 ILKIG---CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       248 l~~~g---~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ....+   +.++||+++.|++++|..+....
T Consensus       177 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~  207 (214)
T 2j1l_A          177 ARSVGAVAYLECSARLHDNVHAVFQEAAEVA  207 (214)
T ss_dssp             HHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            33444   45699999999999999987655

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.81  E-value=3.4e-20  Score=158.48  Aligned_cols=157  Identities=17%  Similarity=0.197  Sum_probs=107.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++...... +..|+.......+....    ..  ..+.+|||||+.+....       .
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~~-------~   90 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYIADIEVDG----KQ--VELALWDTAGQEDYDRL-------R   90 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCEEEEEETT----EE--EEEEEECCCCSGGGTTT-------G
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEEEEEEECC----EE--EEEEEEECCCchhHHHH-------H
Confidence            35899999999999999999998764322 22222222212222211    11  26899999998765321       1


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-------------HHHHHH
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEE  247 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~l~~~  247 (310)
                      ..+++.+|++++|+|+++..+++.. ..|...+..+.   .+.|+++|+||+|+.......             ++..+.
T Consensus        91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  167 (201)
T 2gco_A           91 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM  167 (201)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred             HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHH
Confidence            2356789999999999988777777 56777777654   378999999999998653211             122233


Q ss_pred             HHhcC---CCccccCccCCHHHHHHHHhhcc
Q 021615          248 ILKIG---CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       248 l~~~g---~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ....+   +.++||+++.|++++|..+...+
T Consensus       168 ~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~  198 (201)
T 2gco_A          168 ANRISAFGYLECSAKTKEGVREVFEMATRAG  198 (201)
T ss_dssp             HHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            33343   45699999999999999986643

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.81  E-value=3.4e-20  Score=160.37  Aligned_cols=160  Identities=14%  Similarity=0.073  Sum_probs=109.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|||||||+++|++.... ..+..|+.......+....    ..  ..+.+|||||+.+....       
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~~-------   91 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEE----QR--VELSLWDTSGSPYYDNV-------   91 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC------CE--EEEEEEEECCSGGGTTT-------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECC----EE--EEEEEEECCCCHhHHHH-------
Confidence            3468999999999999999999987643 2222232222222222221    11  26899999998765321       


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHH-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-------------hHHHHHHH
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-------------DRLQSLTE  246 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~-~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-------------~~~~~l~~  246 (310)
                      ...+++.+|++++|+|+++..+++. ...|..++..+.   .+.|+++|+||+|+.+..             ...++..+
T Consensus        92 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  168 (214)
T 3q3j_B           92 RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA  168 (214)
T ss_dssp             GGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred             HHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH
Confidence            2234678999999999999888887 688888888764   378999999999996421             11222233


Q ss_pred             HHHhc---CCCccccCccCC-HHHHHHHHhhccCC
Q 021615          247 EILKI---GCDKVTSETELS-SEDAVKSLSTEGGE  277 (310)
Q Consensus       247 ~l~~~---g~~~~sa~~~~g-i~~l~~~l~~~~~~  277 (310)
                      .....   .+.++||+++.| ++++|..+...+..
T Consensus       169 ~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~  203 (214)
T 3q3j_B          169 IAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN  203 (214)
T ss_dssp             HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence            33333   456699999998 99999998776543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.81  E-value=1.1e-21  Score=167.41  Aligned_cols=161  Identities=15%  Similarity=0.150  Sum_probs=106.5

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ....+|+++|.+|||||||+|+|++........+.++.+.....+....    ..  ..+.+|||||+.+.....     
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~~~-----   99 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG----KT--IKLQIWDTAGQERFRTIT-----   99 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETT----EE--EEEEEECCTTCTTCCCCS-----
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECC----EE--EEEEEEECCCcHhHHHHH-----
Confidence            3457899999999999999999998764433333333333333333221    11  268999999987654321     


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDK  255 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~  255 (310)
                        ..+++.+|++++|+|+++..+++....|+..+..+..  .+.|+++|+||+|+.....    ....+...+ .+.+.+
T Consensus       100 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~  174 (199)
T 3l0i_B          100 --SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL-GIPFLE  174 (199)
T ss_dssp             --CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT-TCCBCC
T ss_pred             --HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCccccCCHHHHHHHHHHc-CCeEEE
Confidence              2345689999999999999888888888888876543  3689999999999975321    122222222 245667


Q ss_pred             cccCccCCHHHHHHHHhhccC
Q 021615          256 VTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      +||+++.|+.++|..+.....
T Consensus       175 vSA~~g~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          175 TSAKNATNVEQSFMTMAAEIK  195 (199)
T ss_dssp             CCC---HHHHHHHHHHTTTTT
T ss_pred             EECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999876653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.81  E-value=4.9e-19  Score=165.11  Aligned_cols=163  Identities=27%  Similarity=0.415  Sum_probs=119.4

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc-hHH-
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLG-  178 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~-~l~-  178 (310)
                      ..++|+++|++|||||||+|+|++....+.+++++|.....+.+....        ..+.+|||||+.+...... .+. 
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~  237 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--------FRYQIIDTPGLLDRPISERNEIEK  237 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--------EEEEEEECTTTSSSCSTTSCHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--------ceEEEEeCCCccccchhhhhHHHH
Confidence            457899999999999999999999886667889999887776665332        2689999999976533211 122 


Q ss_pred             HHHHHHhhhcCEEEEecccCCCC--cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCC
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAEN--PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCD  254 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~--~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~  254 (310)
                      ..+......+|++++|+|+++..  ..+....|..++.....   ++|+++|+||+|+....+ .+...+.+..  ..+.
T Consensus       238 ~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~  313 (357)
T 2e87_A          238 QAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADEEN-IKRLEKFVKEKGLNPI  313 (357)
T ss_dssp             HHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCHHH-HHHHHHHHHHTTCCCE
T ss_pred             HHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCChHH-HHHHHHHHHhcCCCeE
Confidence            22222234689999999998765  55666667777765432   789999999999987543 3344444443  3456


Q ss_pred             ccccCccCCHHHHHHHHhhcc
Q 021615          255 KVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .+||+++.|++++++.+....
T Consensus       314 ~iSA~~g~gi~~l~~~i~~~l  334 (357)
T 2e87_A          314 KISALKGTGIDLVKEEIIKTL  334 (357)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHH
T ss_pred             EEeCCCCcCHHHHHHHHHHHH
Confidence            699999999999999987765

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.81  E-value=3.2e-20  Score=156.18  Aligned_cols=157  Identities=16%  Similarity=0.146  Sum_probs=106.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++.... ..+..|+.......+....    ..  ..+.+|||||+.++...       .
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~~-------~   72 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDT----QR--IELSLWDTSGSPYYDNV-------R   72 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSS----CE--EEEEEEEECCSGGGTTT-------G
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECC----EE--EEEEEEECCCChhhhhh-------H
Confidence            467999999999999999999987532 2222222222222222221    11  26899999998765321       1


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----------------hHHHHH
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRLQSL  244 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----------------~~~~~l  244 (310)
                      ..+++.+|++++|+|++++.+++.. ..|..++..+.   .+.|+++|+||+|+....                +....+
T Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  149 (184)
T 1m7b_A           73 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM  149 (184)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred             HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence            2346789999999999988887777 67777787664   368999999999997421                112223


Q ss_pred             HHHHHhcCCCccccC-ccCCHHHHHHHHhhcc
Q 021615          245 TEEILKIGCDKVTSE-TELSSEDAVKSLSTEG  275 (310)
Q Consensus       245 ~~~l~~~g~~~~sa~-~~~gi~~l~~~l~~~~  275 (310)
                      .+.+....+.++||+ ++.|++++|..+...+
T Consensus       150 ~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~  181 (184)
T 1m7b_A          150 AKQIGAATYIECSALQSENSVRDIFHVATLAC  181 (184)
T ss_dssp             HHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             HHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence            322222346679998 6899999999986654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.81  E-value=1.6e-20  Score=157.09  Aligned_cols=155  Identities=15%  Similarity=0.123  Sum_probs=103.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|||||||+++|++.+...  + ..|.......+....        ..+.+|||||+.+....       
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~-~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~~-------   78 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEVVT--T-KPTIGFNVETLSYKN--------LKLNVWDLGGQTSIRPY-------   78 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEE--E-CSSTTCCEEEEEETT--------EEEEEEEEC----CCTT-------
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCcCc--c-CCcCccceEEEEECC--------EEEEEEECCCCHhHHHH-------
Confidence            45689999999999999999999765311  0 112112222333221        27899999999765321       


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-------CC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GC  253 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-------g~  253 (310)
                      +..++..+|++++|+|++++.+++....++..+.... ...+.|+++|+||+|+.+... .+++.+.+...       .+
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~  156 (183)
T 1moz_A           79 WRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPGALS-ASEVSKELNLVELKDRSWSI  156 (183)
T ss_dssp             GGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTTCCC-HHHHHHHTTTTTCCSSCEEE
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcCh-hhCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEE
Confidence            2345678999999999999888887777766665432 124789999999999976422 23344433211       24


Q ss_pred             CccccCccCCHHHHHHHHhhcc
Q 021615          254 DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .++||+++.|++++++.+....
T Consensus       157 ~~~Sa~~~~gi~~l~~~l~~~~  178 (183)
T 1moz_A          157 VASSAIKGEGITEGLDWLIDVI  178 (183)
T ss_dssp             EEEBGGGTBTHHHHHHHHHHHH
T ss_pred             EEccCCCCcCHHHHHHHHHHHH
Confidence            5689999999999999987654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.81  E-value=2.3e-19  Score=154.38  Aligned_cols=159  Identities=21%  Similarity=0.139  Sum_probs=97.2

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH-
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR-  179 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~-  179 (310)
                      ..++|+++|.+|||||||+++|++... ...++.++.  ....+..+..   .  ...+.+|||||+.+.       .. 
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~~--~~~~~~~~~~---~--~~~~~i~Dt~G~~~~-------~~~   70 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITD--SSAIYKVNNN---R--GNSLTLIDLPGHESL-------RFQ   70 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCSC--EEEEEECSST---T--CCEEEEEECCCCHHH-------HHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCcce--eeEEEEecCC---C--ccEEEEEECCCChhH-------HHH
Confidence            347899999999999999999998762 233443332  2222333210   0  127999999998643       22 


Q ss_pred             HHHHHhhhcCEEEEecccCCCC-cHH-HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH---hHHHHHHHHHH-----
Q 021615          180 NFLRHLRRTRLLVHVIDAAAEN-PVN-DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEIL-----  249 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~-~~~-~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~~~l~~~l~-----  249 (310)
                      .+..+++.+|++++|+|+++.. ... ....|...+........+.|+++|+||+|+....   ...+.+.+.+.     
T Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~  150 (214)
T 2fh5_B           71 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVT  150 (214)
T ss_dssp             HHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhcc
Confidence            2334478899999999998632 122 2233443433311112368999999999997542   22333333333     


Q ss_pred             --------------------------------hcCCCccccCcc------CCHHHHHHHHhhc
Q 021615          250 --------------------------------KIGCDKVTSETE------LSSEDAVKSLSTE  274 (310)
Q Consensus       250 --------------------------------~~g~~~~sa~~~------~gi~~l~~~l~~~  274 (310)
                                                      ...+.++||+++      .|++++|..+...
T Consensus       151 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          151 RSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             CC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             chhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                                            122445899999      9999999988653

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.81  E-value=9.1e-20  Score=166.67  Aligned_cols=164  Identities=17%  Similarity=0.112  Sum_probs=114.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..||+++|.+|||||||+|+|++.... .++++++|.....+.+....       ...+.+|||||+.+...  ..+...
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-------~~~l~i~Dt~G~~~~~~--~~~~~~   73 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-------NMTLNLWDCGGQDVFME--NYFTKQ   73 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-------TEEEEEEEECCSHHHHH--HHHTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-------ceEEEEEECCCcHHHhh--hhhhhH
Confidence            368999999999999999999987533 36788899887777665321       12799999999865410  000112


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------HHHHHHHHHhcC-
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILKIG-  252 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------~~~l~~~l~~~g-  252 (310)
                      ....++.+|++++|+|+++..+++++..|...+........+.|+++|+||+|+......       .++..+....+| 
T Consensus        74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~  153 (307)
T 3r7w_A           74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF  153 (307)
T ss_dssp             HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence            234457899999999999999888876665544432211237899999999999873222       133444444554 


Q ss_pred             ----CCccccCccCCHHHHHHHHhhcc
Q 021615          253 ----CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       253 ----~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                          +.++|+++ .++.++|..+....
T Consensus       154 ~~~~~~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          154 PNLIGFPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             CSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred             CCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence                34589999 88888888776654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.81  E-value=3.9e-20  Score=158.80  Aligned_cols=158  Identities=16%  Similarity=0.163  Sum_probs=105.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++..... .+..|+.......+....    .  ...+.+|||||+.+....       .
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~~~-------~   90 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDG----K--QVELALWDTAGQEDYDRL-------R   90 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETT----E--EEEEEEEECTTCTTCTTT-------G
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECC----E--EEEEEEEECCCcHHHHHH-------H
Confidence            3589999999999999999999876432 222222211111222111    1  126899999998765321       1


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHH-------------HHHHH
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-------------SLTEE  247 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-------------~l~~~  247 (310)
                      ..++..+|++++|+|+++..+++.. ..|...+..+.   .+.|+++|+||+|+.......+             ...+.
T Consensus        91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  167 (207)
T 2fv8_A           91 PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAM  167 (207)
T ss_dssp             GGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHH
Confidence            2356789999999999987777776 56777777653   3789999999999976532211             11222


Q ss_pred             HHhcC---CCccccCccCCHHHHHHHHhhccC
Q 021615          248 ILKIG---CDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       248 l~~~g---~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      ....+   +.++||+++.|++++|..+.....
T Consensus       168 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~  199 (207)
T 2fv8_A          168 AVRIQAYDYLECSAKTKEGVREVFETATRAAL  199 (207)
T ss_dssp             HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            22333   456999999999999999877653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.81  E-value=3.9e-20  Score=159.11  Aligned_cols=158  Identities=16%  Similarity=0.147  Sum_probs=107.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|||||||+++|++..... .+..|+.......+..+.    ..  ..+.+|||||+.++...       
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~~-------   92 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDT----QR--IELSLWDTSGSPYYDNV-------   92 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEESSS----SE--EEEEEEEECCSGGGTTT-------
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEECC----EE--EEEEEEeCCCcHhhhHH-------
Confidence            45789999999999999999999876432 222222222222232221    11  26899999998765322       


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----------------hHHHH
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRLQS  243 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----------------~~~~~  243 (310)
                      ...++..+|++++|+|+++..+++.. ..|..++..+.   .+.|+++|+||+|+....                +....
T Consensus        93 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  169 (205)
T 1gwn_A           93 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN  169 (205)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred             HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH
Confidence            12346789999999999988887777 67778887764   368999999999997421                11223


Q ss_pred             HHHHHHhcCCCccccC-ccCCHHHHHHHHhhcc
Q 021615          244 LTEEILKIGCDKVTSE-TELSSEDAVKSLSTEG  275 (310)
Q Consensus       244 l~~~l~~~g~~~~sa~-~~~gi~~l~~~l~~~~  275 (310)
                      +.+.+....+.++||+ ++.|++++|..+...+
T Consensus       170 ~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~  202 (205)
T 1gwn_A          170 MAKQIGAATYIECSALQSENSVRDIFHVATLAC  202 (205)
T ss_dssp             HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence            3323222345679998 6899999999886543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.81  E-value=2.8e-19  Score=150.30  Aligned_cols=154  Identities=21%  Similarity=0.172  Sum_probs=98.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC----ch-
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----KG-  176 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~----~~-  176 (310)
                      +++|+++|.+|||||||+++|++........|++|.......+.            .+.+|||||+.......    .. 
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~------------~~~l~Dt~G~~~~~~~~~~~~~~~   68 (190)
T 2cxx_A            1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK------------NHKIIDMPGFGFMMGLPKEVQERI   68 (190)
T ss_dssp             -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET------------TEEEEECCCBSCCTTSCHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC------------CEEEEECCCccccccCCHHHHHHH
Confidence            36899999999999999999999886666677776654433321            58999999975432211    11 


Q ss_pred             --HHHHHHHH-hhhcCEEEEecccCCCCcHHHH-HHHH------------HHHHhcCCCCCCCCEEEEEeCCCCCCcH-h
Q 021615          177 --LGRNFLRH-LRRTRLLVHVIDAAAENPVNDY-RTVK------------EELRMYNPDYLERPFIVVLNKIDLPEAR-D  239 (310)
Q Consensus       177 --l~~~~~~~-l~~~d~il~VvD~s~~~~~~~~-~~~~------------~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~  239 (310)
                        +...+++. ...++++++|+|.+   ++... ..|.            ..+..     .+.|+++|+||+|+.... +
T Consensus        69 ~~~~~~~~~~~~~~~~~v~~v~d~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~  140 (190)
T 2cxx_A           69 KDEIVHFIEDNAKNIDVAVLVVDGK---AAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKNVQE  140 (190)
T ss_dssp             HHHHHHHHHHHGGGCCEEEEEEETT---HHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSCHHH
T ss_pred             HHHHHHHHHhhhccCCEEEEEEcch---hhhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccCcHHH
Confidence              12222332 44556666776654   33332 2222            22222     368999999999998753 2


Q ss_pred             HHHHHHHHHHh------cCCCccccCccCCHHHHHHHHhhcc
Q 021615          240 RLQSLTEEILK------IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       240 ~~~~l~~~l~~------~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ..+.+.+.+..      ..+.++||+++.|++++|+.+....
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  182 (190)
T 2cxx_A          141 VINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI  182 (190)
T ss_dssp             HHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence            33444433321      0135799999999999999987655

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.80  E-value=9.7e-20  Score=153.58  Aligned_cols=155  Identities=19%  Similarity=0.138  Sum_probs=106.0

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...+|+++|.+|||||||+++|++..... ..  .|.......+....        ..+.+|||||+.+.....      
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~--~t~~~~~~~~~~~~--------~~~~~~Dt~G~~~~~~~~------   83 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TV--PTVGVNLETLQYKN--------ISFEVWDLGGQTGVRPYW------   83 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEE-EC--SSTTCCEEEEEETT--------EEEEEEEECCSSSSCCCC------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCC-cC--CCCceEEEEEEECC--------EEEEEEECCCCHhHHHHH------
Confidence            45689999999999999999998765211 11  12222223333321        278999999997654321      


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cCC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGC  253 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g~  253 (310)
                       ..+++.+|++++|+|++++.+++....+...+.... ...+.|+++|+||+|+....+ .+++.+.+..       ..+
T Consensus        84 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~  160 (189)
T 2x77_A           84 -RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED-ELRKSLLLIFANKQDLPDAAS-EAEIAEQLGVSSIMNRTWTI  160 (189)
T ss_dssp             -SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCS-TTTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEE
T ss_pred             -HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh-hcCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhccCCceEE
Confidence             234578999999999999888887766666554321 224789999999999986522 2333333321       125


Q ss_pred             CccccCccCCHHHHHHHHhhcc
Q 021615          254 DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .++||+++.|++++++.+....
T Consensus       161 ~~~Sa~~~~gi~~l~~~l~~~i  182 (189)
T 2x77_A          161 VKSSSKTGDGLVEGMDWLVERL  182 (189)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEccCCCccCHHHHHHHHHHHH
Confidence            5699999999999999987654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.80  E-value=7.4e-20  Score=154.69  Aligned_cols=158  Identities=15%  Similarity=0.114  Sum_probs=105.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..+|+++|.+|||||||+++|++... ...+..|+.......+..+.    ..  ..+.+|||||+.++..    +    
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~----~----   85 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSSEETVDH----QP--VHLRVMDTADLDTPRN----C----   85 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETT----EE--EEEEEEECCC---CCC----T----
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeEEEEECC----EE--EEEEEEECCCCCcchh----H----
Confidence            46899999999999999999998762 23343343322111222111    11  2688999999876532    2    


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV  256 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~  256 (310)
                      ..++..+|++++|+|+++..+++....|..++..+.. ...+.|+++|+||+|+....    +....+.+.+ .+.+.++
T Consensus        86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~  164 (187)
T 3c5c_A           86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF-GCLFFEV  164 (187)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCEEEEC
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc-CCcEEEE
Confidence            2356689999999999998888888888887776421 01368999999999996432    2223333222 2346669


Q ss_pred             cc-CccCCHHHHHHHHhhcc
Q 021615          257 TS-ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa-~~~~gi~~l~~~l~~~~  275 (310)
                      || +++.|++++|..+....
T Consensus       165 Sa~~~g~gv~~lf~~l~~~i  184 (187)
T 3c5c_A          165 SACLDFEHVQHVFHEAVREA  184 (187)
T ss_dssp             CSSSCSHHHHHHHHHHHHHH
T ss_pred             eecCccccHHHHHHHHHHHH
Confidence            99 89999999999986643

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.80  E-value=1.6e-19  Score=167.92  Aligned_cols=111  Identities=38%  Similarity=0.643  Sum_probs=84.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC---------CCccCCCceEEEeCCCCCccccC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL---------GAEKYSSEATLADLPGLIEGAHL  173 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~---------~~~~~~~~~~i~DtPG~~~~~~~  173 (310)
                      .+|++||.||||||||+|+|++....++++||||+.|+.+.+......         +.......+.+|||||+.++++.
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            579999999999999999999998777999999999999888753210         00000126899999999998877


Q ss_pred             CchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHH
Q 021615          174 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEEL  213 (310)
Q Consensus       174 ~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l  213 (310)
                      .++++..|+.+++.||++++|+|+++          .++.++++.+..||
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL  132 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTEL  132 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHH
Confidence            77888889999999999999999986          25677776665555

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.80  E-value=9.6e-20  Score=166.09  Aligned_cols=157  Identities=24%  Similarity=0.315  Sum_probs=110.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCC-ccccCCchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI-EGAHLGKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~-~~~~~~~~l~~~  180 (310)
                      ..|+++|+||||||||+|+|++.+..+ ++.+.||.....+.+....        ..+.++||||+. +..   ..+...
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--------~~i~~iDTpG~~~~~~---~~l~~~   77 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--------YQAIYVDTPGLHMEEK---RAINRL   77 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--------EEEEEESSSSCCHHHH---HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--------eeEEEEECcCCCccch---hhHHHH
Confidence            369999999999999999999987654 6778888766666655332        278999999986 221   112222


Q ss_pred             H----HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-hcCC--
Q 021615          181 F----LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-KIGC--  253 (310)
Q Consensus       181 ~----~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-~~g~--  253 (310)
                      +    ...++.+|++++|+|+++ ....+ ..+.+.+..     .+.|+++|+||+|+...........+.+. .+++  
T Consensus        78 ~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~-~~i~~~l~~-----~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~  150 (301)
T 1ega_A           78 MNKAASSSIGDVELVIFVVEGTR-WTPDD-EMVLNKLRE-----GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLD  150 (301)
T ss_dssp             HTCCTTSCCCCEEEEEEEEETTC-CCHHH-HHHHHHHHS-----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSE
T ss_pred             HHHHHHHHHhcCCEEEEEEeCCC-CCHHH-HHHHHHHHh-----cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCc
Confidence            2    344678999999999987 33333 334445543     36899999999999873333333344444 3454  


Q ss_pred             -CccccCccCCHHHHHHHHhhccCC
Q 021615          254 -DKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       254 -~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                       ..+|++++.|+.++++.+...+.+
T Consensus       151 ~i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          151 IVPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             EEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCc
Confidence             458999999999999999876544

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.80  E-value=6e-20  Score=156.59  Aligned_cols=164  Identities=20%  Similarity=0.178  Sum_probs=82.2

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCcee-eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~-~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      ...+|+++|.+|||||||+++|++..... ..+..|+- +.....+......  ..  ..+.+|||||+.+.       .
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--~~--~~~~l~Dt~G~~~~-------~   87 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT--VS--VELFLLDTAGSDLY-------K   87 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEECTTSS--EE--EEEEEEETTTTHHH-------H
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcc--cE--EEEEEEECCCcHHH-------H
Confidence            44689999999999999999999874332 33333332 3344444433100  01  26899999998543       2


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCC-cHh-HHHHHHHHHHhcC--C
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPE-ARD-RLQSLTEEILKIG--C  253 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~-~~~~p~ivv~NK~Dl~~-~~~-~~~~l~~~l~~~g--~  253 (310)
                      ..+..+++.+|++++|+|++++.+++....|..++..+... ..+.|+++|+||+|+.. ... ..++..+....++  +
T Consensus        88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~  167 (208)
T 2yc2_C           88 EQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDF  167 (208)
T ss_dssp             HHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEE
Confidence            23345577899999999999988888888888888775421 13689999999999976 221 1233444444444  5


Q ss_pred             CccccCc-cCCHHHHHHHHhhcc
Q 021615          254 DKVTSET-ELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 ~~~sa~~-~~gi~~l~~~l~~~~  275 (310)
                      .++|+++ +.|+.++|..+....
T Consensus       168 ~~~Sa~~~~~gi~~l~~~i~~~~  190 (208)
T 2yc2_C          168 FDVSANPPGKDADAPFLSIATTF  190 (208)
T ss_dssp             EECCC-------CHHHHHHHHHH
T ss_pred             EEeccCCCCcCHHHHHHHHHHHH
Confidence            5689999 999999999987655

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.80  E-value=3.3e-19  Score=151.68  Aligned_cols=162  Identities=17%  Similarity=0.159  Sum_probs=97.3

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      +..++|+++|.+|||||||++++++..... ...+.+............   ..  ...+.+|||||+.++......   
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~--~~~l~i~Dt~G~~~~~~~~~~---   88 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTNKIYKDDISN---SS--FVNFQIWDFPGQMDFFDPTFD---   88 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCCSCEEEEECC---TT--SCCEEEEECCSSCCTTCTTCC---
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhcCCCc-ceeeeccccceeeeeccC---CC--eeEEEEEECCCCHHHHhhhhh---
Confidence            446789999999999999999999853221 111111111111111100   01  127999999998775322100   


Q ss_pred             HHHHHhhhcCEEEEecccCCC--CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------HHHHHHHHHh
Q 021615          180 NFLRHLRRTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILK  250 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~--~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------~~~l~~~l~~  250 (310)
                       ...+++.+|++++|+|+++.  .....+..|..++....   .+.|+++|+||+|+......       .....+.+..
T Consensus        89 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~  164 (196)
T 3llu_A           89 -YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN---PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLAD  164 (196)
T ss_dssp             -HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC---TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC---CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHH
Confidence             02445689999999999986  33333344444443222   37899999999999864321       1112222332


Q ss_pred             -----c--CCCccccCccCCHHHHHHHHhhcc
Q 021615          251 -----I--GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       251 -----~--g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                           .  .+.++||++ .|++++|..++...
T Consensus       165 ~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          165 AGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence                 2  345699999 99999999987643

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.80  E-value=7.3e-20  Score=170.95  Aligned_cols=111  Identities=39%  Similarity=0.699  Sum_probs=86.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC--------CCCc-----cCCCceEEEeCCCCCc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT--------LGAE-----KYSSEATLADLPGLIE  169 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~--------~~~~-----~~~~~~~i~DtPG~~~  169 (310)
                      .+|++||.||||||||+|+|++..+.++++||+|+.|+.+.+.....        ....     .....+.+|||||+.+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            57999999999999999999998777799999999999998754210        0000     0112689999999999


Q ss_pred             cccCCchHHHHHHHHhhhcCEEEEecccCCC----------CcHHHHHHHHHHH
Q 021615          170 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEEL  213 (310)
Q Consensus       170 ~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~----------~~~~~~~~~~~~l  213 (310)
                      +++..++++..|+.+++.||++++|+|+++.          ++..+++.+..+|
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL  135 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETEL  135 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHH
Confidence            9888888999999999999999999999862          4555555544444

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.80  E-value=1.7e-19  Score=156.22  Aligned_cols=161  Identities=16%  Similarity=0.105  Sum_probs=104.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ...+|+|+|.+|||||||+|+|++....+ ..++.++.+.....+..+.    ..  ..+.+|||+|....       .+
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~----~~--~~l~~~Dt~g~~~~-------~~  102 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDG----ES--ATIILLDMWENKGE-------NE  102 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETT----EE--EEEEEECCTTTTHH-------HH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECC----ee--eEEEEeecCCCcch-------hh
Confidence            34789999999999999999999765433 3333333222222232221    11  15789999997431       11


Q ss_pred             HH-HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHH--hcCCCc
Q 021615          180 NF-LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDK  255 (310)
Q Consensus       180 ~~-~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~--~~g~~~  255 (310)
                      .+ ..+++.+|++++|+|+++..+++....|+..+..... ..+.|+++|+||+|+...... .++......  .+.+.+
T Consensus       103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e  181 (211)
T 2g3y_A          103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIE  181 (211)
T ss_dssp             HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred             hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEE
Confidence            11 1224668999999999998888888888777765321 136899999999999643211 111111112  234567


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +||+++.|++++|..++...
T Consensus       182 ~SAk~g~~v~elf~~l~~~i  201 (211)
T 2g3y_A          182 TSAAVQHNVKELFEGIVRQV  201 (211)
T ss_dssp             CBTTTTBSHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999987654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.79  E-value=2.8e-19  Score=171.15  Aligned_cols=160  Identities=24%  Similarity=0.278  Sum_probs=107.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC-----c
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-----K  175 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~-----~  175 (310)
                      ..+|+++|+||||||||+|+|++.... ++++++||.++..+.+..+..        .+.+|||||+.+.....     .
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--------~~~l~Dt~G~~~~~~~~~~~~e~  251 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--------KYVFVDTAGLRRKSRVEPRTVEK  251 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--------EEEESSCSCC-----------CC
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--------EEEEEECCCCccccccchhhHHH
Confidence            468999999999999999999998754 488999999988888765432        68999999985432211     0


Q ss_pred             hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHH----HHHHh
Q 021615          176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLT----EEILK  250 (310)
Q Consensus       176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~----~~l~~  250 (310)
                      -.......+++.+|++++|+|++...+.++. .+...+..     .++|+++|+||+|+.+..+ ..+++.    +.+..
T Consensus       252 ~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  325 (439)
T 1mky_A          252 YSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYF  325 (439)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhcc
Confidence            0011224567889999999999987666553 34444544     4789999999999976432 123333    22222


Q ss_pred             c---CCCccccCccCCHHHHHHHHhhcc
Q 021615          251 I---GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       251 ~---g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .   .+..+||++|.|++++|..+....
T Consensus       326 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~  353 (439)
T 1mky_A          326 IDYSPLIFTSADKGWNIDRMIDAMNLAY  353 (439)
T ss_dssp             GTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            2   344589999999999999886644

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.79  E-value=2.2e-20  Score=161.81  Aligned_cols=156  Identities=12%  Similarity=0.077  Sum_probs=111.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHH-cCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAIT-HAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~-~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ..+|+++|.+|||||||+++|+ +.... ..+..++|.......+....        ..+.+|||||+.+....      
T Consensus        15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~~------   80 (221)
T 3gj0_A           15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP--------IKFNVWDTAGQEKFGGL------   80 (221)
T ss_dssp             EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEE--------EEEEEEEECSGGGTSCC------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEE--------EEEEEEeCCChHHHhHH------
Confidence            4689999999999999999954 33222 25556666654444433221        27899999998765332      


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--HHHHHHHHHHhcCCCccc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIGCDKVT  257 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~l~~~l~~~g~~~~s  257 (310)
                       ...+++.+|++++|+|+++..+++....|..++..+.   .+.|+++|+||+|+.+...  ....+... ....+.++|
T Consensus        81 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~S  155 (221)
T 3gj0_A           81 -RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVKAKSIVFHRK-KNLQYYDIS  155 (221)
T ss_dssp             -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSSCSSCGGGCCHHHH-HTCEEEECB
T ss_pred             -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCccccccccHHHHHHHHH-cCCEEEEEe
Confidence             1234568999999999999888888888888888764   3789999999999975421  11112211 134566799


Q ss_pred             cCccCCHHHHHHHHhhccC
Q 021615          258 SETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~~  276 (310)
                      ++++.|++++|..+.....
T Consensus       156 a~~~~gi~~l~~~l~~~l~  174 (221)
T 3gj0_A          156 AKSNYNFEKPFLWLARKLI  174 (221)
T ss_dssp             GGGTBTTTHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999877553

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.79  E-value=2.3e-20  Score=179.41  Aligned_cols=163  Identities=25%  Similarity=0.279  Sum_probs=106.8

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  176 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~  176 (310)
                      .++...+|+++|+||||||||+|+|++.+.. +.++++||.+.....+.....        ++.+|||||+.+....-+.
T Consensus       220 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--------~v~liDT~G~~~~~~~ve~  291 (462)
T 3geh_A          220 LLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--------PVQVLDTAGIRETSDQVEK  291 (462)
T ss_dssp             HHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--------EEEECC-------------
T ss_pred             hhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--------EEEEEECCccccchhHHHH
Confidence            3456678999999999999999999987654 488899998776666654432        7899999999765322121


Q ss_pred             HH-HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCc
Q 021615          177 LG-RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDK  255 (310)
Q Consensus       177 l~-~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~  255 (310)
                      ++ +....++..+|++++|+|++++....+ ..+++.+.       .+|+++|+||+|+...... ..+.+......+..
T Consensus       292 ~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-------~~piivV~NK~Dl~~~~~~-~~~~~~~~~~~~i~  362 (462)
T 3geh_A          292 IGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-------HRPLILVMNKIDLVEKQLI-TSLEYPENITQIVH  362 (462)
T ss_dssp             -------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-------TSCEEEEEECTTSSCGGGS-TTCCCCTTCCCEEE
T ss_pred             HHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-------CCcEEEEEECCCCCcchhh-HHHHHhccCCcEEE
Confidence            11 123456788999999999998766555 33444443       4799999999999875431 11110011234566


Q ss_pred             cccCccCCHHHHHHHHhhccCC
Q 021615          256 VTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      +|++++.|++++++.+......
T Consensus       363 iSAktg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          363 TAAAQKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             EBTTTTBSHHHHHHHHHHHHTT
T ss_pred             EECCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998775543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.79  E-value=1.4e-19  Score=159.20  Aligned_cols=166  Identities=14%  Similarity=0.129  Sum_probs=97.7

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCC--CceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYP--FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~--~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      ...++|+|+|.+|||||||+|+|++........+  ++|..+....+....        ..+.||||||+.+.......+
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~i~liDTpG~~~~~~~~~~~   98 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--------TELVVVDTPGIFDTEVPNAET   98 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--------EEEEEEECCSCC-----CHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--------ceEEEEECCCccCCCCCHHHH
Confidence            3457899999999999999999999887655555  566666655555432        278999999998765443434


Q ss_pred             HHHHHHH----hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-------HHHHH
Q 021615          178 GRNFLRH----LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------QSLTE  246 (310)
Q Consensus       178 ~~~~~~~----l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------~~l~~  246 (310)
                      ...+.+.    .+.+|++++|+|++.... .+...+...+..+... ..+|+++|+||+|+....+..       +.+.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~  176 (239)
T 3lxx_A           99 SKEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQD  176 (239)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC------------CHHHHH
T ss_pred             HHHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccHHHHHHhchHHHHH
Confidence            4444443    455799999999976443 3333332222222111 246999999999997643211       23444


Q ss_pred             HHHhcCCCc--cccC-----ccCCHHHHHHHHhhcc
Q 021615          247 EILKIGCDK--VTSE-----TELSSEDAVKSLSTEG  275 (310)
Q Consensus       247 ~l~~~g~~~--~sa~-----~~~gi~~l~~~l~~~~  275 (310)
                      .+..++...  ++..     ...++.+++..+....
T Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~  212 (239)
T 3lxx_A          177 LMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVV  212 (239)
T ss_dssp             HHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence            455554332  3333     3368888887765543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.79  E-value=2.1e-19  Score=161.25  Aligned_cols=157  Identities=22%  Similarity=0.334  Sum_probs=111.6

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc--hHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--GLGR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~--~l~~  179 (310)
                      .++|+++|.+|||||||+|+|++....+++++++|.....+.+....        ..+.+|||||+.+......  .+.+
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~DtpG~~~~~~~~~~~~~~~   74 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--------KEFLVVDLPGIYSLTAHSIDELIAR   74 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--------EEEEEEECCCCSCCCSSCHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--------ceEEEEeCCCccccccCCHHHHHHH
Confidence            46899999999999999999999887668889999887777766443        2689999999987543211  1222


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~~~  256 (310)
                      .++ ....+|++++|+|+++.   +....+...+...    ...|+++|+||+|+.....   ....+.+.+ .+.+.++
T Consensus        75 ~~~-~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~~~~~  145 (271)
T 3k53_A           75 NFI-LDGNADVIVDIVDSTCL---MRNLFLTLELFEM----EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL-GVPVIPT  145 (271)
T ss_dssp             HHH-HTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT----TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH-SSCEEEC
T ss_pred             Hhh-hccCCcEEEEEecCCcc---hhhHHHHHHHHhc----CCCCEEEEEEChhcCcccccHHHHHHHHHHc-CCcEEEE
Confidence            322 12579999999999864   2233344455443    1289999999999754221   234444433 2456669


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      |++++.|+.+++..+....
T Consensus       146 Sa~~g~gi~~l~~~i~~~~  164 (271)
T 3k53_A          146 NAKKGEGVEELKRMIALMA  164 (271)
T ss_dssp             BGGGTBTHHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHHH
Confidence            9999999999999987654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.78  E-value=1.2e-19  Score=172.33  Aligned_cols=158  Identities=25%  Similarity=0.267  Sum_probs=111.4

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ..++|+++|.+|+|||||+|+|++.... +++++++|.++....+.....       .++.+|||||+.++.........
T Consensus        33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-------~~l~liDTpG~~d~~~l~~~~~~  105 (423)
T 3qq5_A           33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-------GPVTLVDTPGLDDVGELGRLRVE  105 (423)
T ss_dssp             CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-------EEEEEEECSSTTCCCTTCCCCHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-------CeEEEEECcCCCcccchhHHHHH
Confidence            4568999999999999999999998764 478889999888777765432       16899999999987655444445


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH---hcCCCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~---~~g~~~~  256 (310)
                      .....+..+|++++|+|++.   ......|..++..+     +.|+++|+||+|+......  +..+.+.   ...+..+
T Consensus       106 ~~~~~l~~aD~vllVvD~~~---~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~v  175 (423)
T 3qq5_A          106 KARRVFYRADCGILVTDSAP---TPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLV  175 (423)
T ss_dssp             HHHHHHTSCSEEEEECSSSC---CHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCC
T ss_pred             HHHHHHhcCCEEEEEEeCCC---hHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEE
Confidence            56677889999999999932   23345677777763     7899999999999876432  2222222   2456679


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|++++++.+....
T Consensus       176 SAktg~gI~eL~~~L~~~l  194 (423)
T 3qq5_A          176 SALQKKGFDDIGKTISEIL  194 (423)
T ss_dssp             SSCCTTSTTTHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHhh
Confidence            9999999999999998766

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.78  E-value=2.4e-19  Score=165.50  Aligned_cols=155  Identities=20%  Similarity=0.209  Sum_probs=105.4

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..++|+|+|.+|||||||+++|++... ...+  .|.......+....        ..+.||||||+.++..    +   
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~--pT~~~~~~~~~~~~--------~~l~i~Dt~G~~~~~~----~---  225 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTI--PTIGFNVETVEYKN--------ISFTVWDVGGQDKIRP----L---  225 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCC-EEEE--EETTEEEEEEEETT--------EEEEEEECC-----CC----S---
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCC-CCcc--cccceEEEEEecCc--------EEEEEEECCCCHhHHH----H---
Confidence            345899999999999999999998762 1222  24333333443322        2789999999876533    2   


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-------CC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GC  253 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-------g~  253 (310)
                      +..+++.+|++++|+|+++..++.....++..+.... ...+.|+++|+||+|+.+... .+++...+...       .+
T Consensus       226 ~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~  303 (329)
T 3o47_A          226 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYI  303 (329)
T ss_dssp             HHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTCTTCCSSCEEE
T ss_pred             HHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhh-ccCCCeEEEEEECccCCcccC-HHHHHHHhchhhhhcCCCEE
Confidence            2345678999999999999888887766655554321 123789999999999986532 34455444322       24


Q ss_pred             CccccCccCCHHHHHHHHhhcc
Q 021615          254 DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .++||+++.|++++|..+....
T Consensus       304 ~~vSAk~g~gi~el~~~l~~~l  325 (329)
T 3o47_A          304 QATCATSGDGLYEGLDWLSNQL  325 (329)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHHHH
Confidence            5699999999999999987655

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.65  E-value=1.3e-20  Score=161.25  Aligned_cols=158  Identities=16%  Similarity=0.108  Sum_probs=104.5

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      +...+|+++|.+|||||||+++|++.... ..+..|+.......+..+    ...  ..+.+|||||+.+...       
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~----~~~--~~l~i~Dt~G~~~~~~-------   93 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVD----GKP--VNLGLWDTAGQEDYDR-------   93 (204)
Confidence            45678999999999999999999976532 223333322222222211    111  2577999999876532       


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------------HHHHH
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------------LQSLT  245 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~l~  245 (310)
                      ....+++.+|++++|+|++++.++++.. .|...+..+.   .+.|+++|+||+|+.+....             .+...
T Consensus        94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  170 (204)
T 3th5_A           94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL  170 (204)
Confidence            2233456899999999999988777765 6666666543   26899999999999754211             11111


Q ss_pred             HHHHhc---CCCccccCccCCHHHHHHHHhhc
Q 021615          246 EEILKI---GCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       246 ~~l~~~---g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                      +.....   .+.++||+++.|++++|+.+...
T Consensus       171 ~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~  202 (204)
T 3th5_A          171 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRA  202 (204)
Confidence            111222   45679999999999999987653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.78  E-value=8.5e-19  Score=155.95  Aligned_cols=165  Identities=15%  Similarity=0.064  Sum_probs=105.6

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCC-CCCC-ceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH-
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIA-DYPF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL-  177 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~-~~~~-tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l-  177 (310)
                      ...+|+|+|.+|||||||+|+|++....+. ..+. +|.....+.+....        ..+.||||||+.+.......+ 
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~i~iiDTpG~~~~~~~~~~~~   92 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--------REIVIIDTPDMFSWKDHCEALY   92 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--------EEEEEEECCGGGGSSCCCHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--------CEEEEEECcCCCCCCCCHHHHH
Confidence            346799999999999999999999875543 3333 56555555544332        279999999998765433222 


Q ss_pred             ---HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEe-CCCCCCcHhHH-------HHHHH
Q 021615          178 ---GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN-KIDLPEARDRL-------QSLTE  246 (310)
Q Consensus       178 ---~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~N-K~Dl~~~~~~~-------~~l~~  246 (310)
                         .+.+..+++.+|++++|+|++... .. ...++..+..+.......|.++|+| |+|+....-..       ..+.+
T Consensus        93 ~~i~~~~~~~~~~~d~il~V~d~~~~~-~~-~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~  170 (260)
T 2xtp_A           93 KEVQRCYLLSAPGPHVLLLVTQLGRYT-SQ-DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSK  170 (260)
T ss_dssp             HHHHHHHHHHTTCCSEEEEEEETTCCC-HH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHhcCCCCcEEEEEEeCCCCC-HH-HHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHH
Confidence               333445678899999999998622 22 2333344444321112467777777 99998542100       11222


Q ss_pred             HHHhcC-----C--CccccCccCCHHHHHHHHhhcc
Q 021615          247 EILKIG-----C--DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       247 ~l~~~g-----~--~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .+..++     +  ..+||+++.|++++|..+....
T Consensus       171 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~  206 (260)
T 2xtp_A          171 LVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLL  206 (260)
T ss_dssp             HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence            333332     3  5689999999999999886654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.78  E-value=4.5e-19  Score=150.75  Aligned_cols=161  Identities=16%  Similarity=0.120  Sum_probs=102.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .++|+++|.+|||||||+|+|++..... ..++.++.+.....+..+.    ..  ..+.+|||+|.....   ..+...
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~l~~~Dt~~~~~~~---~~~~~~   76 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDG----ES--ATIILLDMWENKGEN---EWLHDH   76 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETT----EE--EEEEEECCCCC-------CTTGGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECC----eE--EEEEEEEeccCcchh---hhHHHh
Confidence            4689999999999999999999754332 3333333222222222221    11  157899999975421   112222


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~s  257 (310)
                         +++.+|++++|+|+++..+++....|+..+..... ..+.|+++|+||+|+...... .++........  .+.++|
T Consensus        77 ---~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~S  152 (192)
T 2cjw_A           77 ---CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETS  152 (192)
T ss_dssp             ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred             ---hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEec
Confidence               34578999999999998888888878777765422 136899999999998642111 11111111223  456699


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |+++.|++++|..++...
T Consensus       153 A~~g~~v~~lf~~l~~~~  170 (192)
T 2cjw_A          153 AAVQHNVKELFEGIVRQV  170 (192)
T ss_dssp             TTTTBSHHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHH
Confidence            999999999999987755

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.77  E-value=3.8e-19  Score=171.05  Aligned_cols=156  Identities=19%  Similarity=0.256  Sum_probs=99.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~  179 (310)
                      .++|+|+|.||||||||+|+|++.+.. +.+++++|.+.....+....        ..+.+|||||+..... ....+..
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~~~~~   94 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--------YDFNLIDTGGIDIGDEPFLAQIRQ   94 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--------SCCEEECCCC------CCHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--------ceEEEEECCCCCCcchHHHHHHHH
Confidence            578999999999999999999998765 47889999887777665432        2799999999864321 1234455


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC---Ccc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---DKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~---~~~  256 (310)
                      ....+++.+|++++|+|+.+.....+. .+.+.+..     .++|+++|+||+|+......   .. .+..+++   ..+
T Consensus        95 ~~~~~~~~ad~il~VvD~~~~~~~~d~-~l~~~l~~-----~~~pvilV~NK~D~~~~~~~---~~-e~~~lg~~~~~~i  164 (456)
T 4dcu_A           95 QAEIAMDEADVIIFMVNGREGVTAADE-EVAKILYR-----TKKPVVLAVNKLDNTEMRAN---IY-DFYSLGFGEPYPI  164 (456)
T ss_dssp             HHHHHHHHCSEEEEEEESSSCSCHHHH-HHHHHHTT-----CCSCEEEEEECC------------C-CSGGGSSSSEEEC
T ss_pred             HHHhhHhhCCEEEEEEeCCCCCChHHH-HHHHHHHH-----cCCCEEEEEECccchhhhhh---HH-HHHHcCCCceEEe
Confidence            566678899999999999876555543 34455543     47999999999998754221   11 1223333   358


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|+.++++.+....
T Consensus       165 SA~~g~gv~~L~~~i~~~l  183 (456)
T 4dcu_A          165 SGTHGLGLGDLLDAVAEHF  183 (456)
T ss_dssp             CTTTCTTHHHHHHHHHTTG
T ss_pred             ecccccchHHHHHHHHhhc
Confidence            9999999999999987654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.76  E-value=1.8e-18  Score=145.65  Aligned_cols=160  Identities=19%  Similarity=0.214  Sum_probs=99.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCC-CCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPT-LGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~-~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .+|+++|.+|||||||+++|++.... ...+. +|............. ....  ...+.+|||||+.++...    .  
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~-~t~g~~~~~~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~----~--   73 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQS-ATVGIDVKDWPIQIRDKRKR--DLVLNVWDFAGREEFYST----H--   73 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC-----------CEEEEEEECSHHHHHTT----S--
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCccCCCcc-eeccEEeEEeeeccccCCCC--ceEEEEEecCCCHHHHHh----h--
Confidence            57999999999999999999986322 22222 222111111111100 0001  127899999998654321    1  


Q ss_pred             HHHHhhhcCEEEEecccCCC-CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH---HHHHHHHH-hcC---
Q 021615          181 FLRHLRRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL---QSLTEEIL-KIG---  252 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~---~~l~~~l~-~~g---  252 (310)
                       ..++..++++++|+|++++ .+++.+..|..++....   .+.|+++|+||+|+.+.....   ....+.+. ..+   
T Consensus        74 -~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  149 (184)
T 2zej_A           74 -PHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPA  149 (184)
T ss_dssp             -HHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCE
T ss_pred             -HHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcc
Confidence             2335578999999999986 35677777877776543   368999999999998653321   12222222 234   


Q ss_pred             ---CCccccCccC-CHHHHHHHHhhcc
Q 021615          253 ---CDKVTSETEL-SSEDAVKSLSTEG  275 (310)
Q Consensus       253 ---~~~~sa~~~~-gi~~l~~~l~~~~  275 (310)
                         +.++||+++. ++.+++..+....
T Consensus       150 ~~~~~~~Sa~~~~~~~~~l~~~i~~~~  176 (184)
T 2zej_A          150 IRDYHFVNATEESDALAKLRKTIINES  176 (184)
T ss_dssp             EEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred             hhheEEEecccCchhHHHHHHHHHHHH
Confidence               4468999996 9999998876554

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.75  E-value=9.5e-18  Score=150.69  Aligned_cols=163  Identities=16%  Similarity=0.156  Sum_probs=88.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCC------CceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc-
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYP------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-  175 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~------~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~-  175 (310)
                      ++|+|+|.+|+|||||+|+|++.......++      .+|............  .+.  ..++.+|||||+.+...... 
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~--~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE--GGV--QLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC----C--CEEEEEEECCCCSCCSCCTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec--CCe--EEEEEEEECCCccccccchhh
Confidence            5799999999999999999998876655542      334333333332211  111  12789999999965432211 


Q ss_pred             --h----HHHHHHHHhhh-------------cCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          176 --G----LGRNFLRHLRR-------------TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       176 --~----l~~~~~~~l~~-------------~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                        .    +..+|..++..             +|+++|+++.+.......-..+++.+..      ++|+++|+||+|+..
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~  158 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT  158 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCC
Confidence              1    22233344433             7799999977663322222334555542      689999999999986


Q ss_pred             cHhH---HHHHHHHHHhc--CCCccccCccCCHHHHHHHHhhcc
Q 021615          237 ARDR---LQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       237 ~~~~---~~~l~~~l~~~--g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ..+.   .+.+.+.+...  .+..+|+.++.|+.+++..+....
T Consensus       159 ~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          159 PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            5432   23445555544  455589999999999998886643

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.75  E-value=1.2e-18  Score=159.50  Aligned_cols=161  Identities=18%  Similarity=0.142  Sum_probs=111.0

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      ..+...+|+++|.+|+|||||++++++... ...+..|+.......+..+.    ..  ..+.+|||||+.+...     
T Consensus       151 ~~~~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~-----  218 (332)
T 2wkq_A          151 AAKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDG----KP--VNLGLWDTAGLEDYDR-----  218 (332)
T ss_dssp             HHTTCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETT----EE--EEEEEEEECCCGGGTT-----
T ss_pred             cccceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECC----EE--EEEEEEeCCCchhhhH-----
Confidence            345668999999999999999999997653 23444455433333333221    11  1567999999876532     


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------------HHH
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------------LQS  243 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~  243 (310)
                        ....++..+|++++|+|++++.++++.. .|...+..+..   +.|+++|+||+|+......             .+.
T Consensus       219 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~  293 (332)
T 2wkq_A          219 --LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ  293 (332)
T ss_dssp             --TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred             --HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccccchhhhccccccccccHHH
Confidence              1223567899999999999887777765 57677776543   7899999999999654221             122


Q ss_pred             HHHHHHhcC---CCccccCccCCHHHHHHHHhhcc
Q 021615          244 LTEEILKIG---CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       244 l~~~l~~~g---~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ..+.....+   +.++||+++.|++++|..+....
T Consensus       294 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  328 (332)
T 2wkq_A          294 GLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  328 (332)
T ss_dssp             HHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence            222333333   45699999999999999987654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.75  E-value=1.1e-18  Score=171.10  Aligned_cols=161  Identities=20%  Similarity=0.233  Sum_probs=104.2

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCC------CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKP------DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG  174 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~------~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~  174 (310)
                      ...||+++|.+|||||||+|+|++...      .++...+++..++.+.+.....    .....+.+|||||+.....  
T Consensus        40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~----~~~~~~~i~Dt~G~e~~~~--  113 (535)
T 3dpu_A           40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDE----LKECLFHFWDFGGQEIMHA--  113 (535)
T ss_dssp             CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCST----TTTCEEEEECCCSCCTTTT--
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCC----CceEEEEEEECCcHHHHHH--
Confidence            346899999999999999999998762      2222222333333323322211    1123799999999766532  


Q ss_pred             chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC-
Q 021615          175 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG-  252 (310)
Q Consensus       175 ~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g-  252 (310)
                        +...|   ++.+|++++|+|+++.   +....|..++..+.+   +.|+++|+||+|+....+ ..+.+.+.+...+ 
T Consensus       114 --~~~~~---l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~  182 (535)
T 3dpu_A          114 --SHQFF---MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQKKINERFPAIEN  182 (535)
T ss_dssp             --TCHHH---HHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTT
T ss_pred             --HHHHH---ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCHHHHHHHHHhcCC
Confidence              23333   4579999999999864   556778888888753   689999999999976433 2344555555555 


Q ss_pred             -CCccccCccCCHHHHHHHHhhccCCc
Q 021615          253 -CDKVTSETELSSEDAVKSLSTEGGEA  278 (310)
Q Consensus       253 -~~~~sa~~~~gi~~l~~~l~~~~~~~  278 (310)
                       +.++||+++.|+++++..+.......
T Consensus       183 ~~~~vSA~~g~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          183 RFHRISCKNGDGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             CEEECCC-----CTTHHHHHHHHHTCT
T ss_pred             ceEEEecCcccCHHHHHHHHHHHHhcc
Confidence             56699999999999999988766443

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.73  E-value=7.3e-18  Score=143.66  Aligned_cols=159  Identities=20%  Similarity=0.115  Sum_probs=106.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .++|+++|++|||||||+++|++........+..+.....+.+..+..    .  ..+.+|||||+.....    +..  
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~----~--~~~~i~Dt~g~~~~~~----~~~--   72 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK----T--IKAQIWDTAGQERYRR----ITS--   72 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTE----E--EEEEEEECSSGGGTTC----CCH--
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE----E--EEEEEEECCCchhhhh----hhH--
Confidence            468999999999999999999998654433343334444455543321    1  1578999999876432    112  


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~sa  258 (310)
                       ..++.++++++|+|..+..+++....|..++.....  .+.|+++|+||+|+...... .+.........  .+.++|+
T Consensus        73 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sa  149 (199)
T 2f9l_A           73 -AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSA  149 (199)
T ss_dssp             -HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             -HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeC
Confidence             234578999999999987777776667776665422  36899999999999643211 12222223333  3455999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|+.++++.+....
T Consensus       150 l~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          150 LDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999987655

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.73  E-value=3.1e-17  Score=155.33  Aligned_cols=164  Identities=18%  Similarity=0.189  Sum_probs=106.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccc-----eEeeCCCC-----CCC-ccCCCceEEEeCCCCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNL-----GRLDGDPT-----LGA-EKYSSEATLADLPGLI  168 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~-----~~v~~~~~-----~~~-~~~~~~~~i~DtPG~~  168 (310)
                      ..++|+++|.+|+|||||+|+|++..... ..++.+|.....     ..+.....     ... ......+.+|||||+.
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~   86 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE   86 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence            34689999999999999999999864322 222222221100     00000000     000 0001378999999985


Q ss_pred             ccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHH
Q 021615          169 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLT  245 (310)
Q Consensus       169 ~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~  245 (310)
                      ++       ...+...+..+|++++|+|+++..+..+...+...+..+.    .+|+++|+||+|+.+..+   ..+++.
T Consensus        87 ~~-------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~----~~~iivviNK~Dl~~~~~~~~~~~~i~  155 (403)
T 3sjy_A           87 VL-------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG----VKNLIIVQNKVDVVSKEEALSQYRQIK  155 (403)
T ss_dssp             GG-------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT----CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             HH-------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC----CCCEEEEEECccccchHHHHHHHHHHH
Confidence            44       4466777889999999999998764444455555555432    368999999999987543   223344


Q ss_pred             HHHHh-----cCCCccccCccCCHHHHHHHHhhcc
Q 021615          246 EEILK-----IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       246 ~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +.+..     ..+..+||+++.|+.++++.|....
T Consensus       156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            44432     2355689999999999999997654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.73  E-value=5.9e-18  Score=153.11  Aligned_cols=168  Identities=19%  Similarity=0.232  Sum_probs=101.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCC------CCCCCC----------------------ceeeccceE-------ee
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPD------IADYPF----------------------TTLMPNLGR-------LD  145 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~------i~~~~~----------------------tT~~~~~~~-------v~  145 (310)
                      ..++|+++|.+|||||||+|+|++....      ++..|.                      +|.+.....       +.
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            4579999999999999999999998742      133332                      222100000       00


Q ss_pred             C--CCCCCC-------ccCCCceEEEeCCCCCcccc--CCc----hHHHHHHHHhhhcCEEE-EecccCCCCcHHHHHHH
Q 021615          146 G--DPTLGA-------EKYSSEATLADLPGLIEGAH--LGK----GLGRNFLRHLRRTRLLV-HVIDAAAENPVNDYRTV  209 (310)
Q Consensus       146 ~--~~~~~~-------~~~~~~~~i~DtPG~~~~~~--~~~----~l~~~~~~~l~~~d~il-~VvD~s~~~~~~~~~~~  209 (310)
                      +  ......       ......+.+|||||+.+...  ...    .+......+++.++.++ +|+|+++.....+...+
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~  184 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence            0  000000       00013799999999976431  112    34445556777888666 79999875544443334


Q ss_pred             HHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhh
Q 021615          210 KEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       210 ~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      .+.+..     .+.|+++|+||+|+.+... ..+.+...+..     ..+..+||+++.|+.++++.+..
T Consensus       185 ~~~~~~-----~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          185 AKEVDP-----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             HHHHCT-----TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             HHHhCC-----CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            444432     3689999999999976432 12222221111     13556899999999999998765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.72  E-value=8.2e-18  Score=142.70  Aligned_cols=160  Identities=20%  Similarity=0.129  Sum_probs=108.2

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ...++|+|+|++|||||||+++|++........+..+.+...+.+..+..    .  ..+.+|||||+.+...    +. 
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~----~--~~~~i~Dt~g~~~~~~----~~-   95 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK----T--IKAQIWDTAGLERYRA----IT-   95 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE----E--EEEEEEEECSCCSSSC----CC-
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE----E--EEEEEEECCCCcchhh----hh-
Confidence            34578999999999999999999998754444444444444555543321    1  1467899999876532    11 


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~  256 (310)
                        ..+++.++++++|+|..+..+++.+..|..++.....  .+.|+++|+||+|+.+.... .+........  +.+.++
T Consensus        96 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~  171 (191)
T 1oix_A           96 --SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIET  171 (191)
T ss_dssp             --HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred             --HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence              2334578999999999887666666667666655422  36799999999998643211 1222222233  334559


Q ss_pred             ccCccCCHHHHHHHHhhc
Q 021615          257 TSETELSSEDAVKSLSTE  274 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~  274 (310)
                      |++++.|+.++++.+...
T Consensus       172 Sald~~~v~~l~~~l~~~  189 (191)
T 1oix_A          172 SALDSTNVEAAFQTILTE  189 (191)
T ss_dssp             CTTTCTTHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHH
Confidence            999999999999987653

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.71  E-value=1.4e-18  Score=169.22  Aligned_cols=155  Identities=16%  Similarity=0.122  Sum_probs=109.3

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..++|+++|.+|+|||||+++|++........+++|.+.....+....       ...+++|||||+.++....      
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-------g~~i~~iDTPGhe~f~~~~------   69 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-------GEKITFLDTPGHAAFSAMR------   69 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-------SSCCBCEECSSSCCTTTSB------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-------CCEEEEEECCChHHHHHHH------
Confidence            457899999999999999999998765555667778776655554321       1268999999997764421      


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--HHHHHHHH---HHh----c
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEE---ILK----I  251 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~l~~~---l~~----~  251 (310)
                       .+.+..+|++++|+|+++....+..+.+ ..+..     .+.|+++|+||+|+.+...  ....+.+.   ...    .
T Consensus        70 -~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~-----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~  142 (537)
T 3izy_P           70 -ARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD-----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDV  142 (537)
T ss_dssp             -BSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT-----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSE
T ss_pred             -HHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH-----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCc
Confidence             2345689999999999997777666554 34443     3689999999999975321  11111111   011    1


Q ss_pred             CCCccccCccCCHHHHHHHHhhcc
Q 021615          252 GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       252 g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .+.++||+++.|+.++++.+...+
T Consensus       143 ~iv~vSAktG~GI~eLle~I~~l~  166 (537)
T 3izy_P          143 QAVHVSALTGENMMALAEATIALA  166 (537)
T ss_dssp             EECCCCSSSSCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCchhHHHHHHHhh
Confidence            355699999999999999986644

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.71  E-value=8e-17  Score=154.12  Aligned_cols=149  Identities=20%  Similarity=0.180  Sum_probs=98.2

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDP  148 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~  148 (310)
                      +...+|+++|.+|+|||||+++|++....+                               ...+++|.+.....+....
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~   94 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK   94 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence            345689999999999999999996553222                               1124456655444444332


Q ss_pred             CCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCc-------HHHHHHHHHHHHhcCCCCC
Q 021615          149 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-------VNDYRTVKEELRMYNPDYL  221 (310)
Q Consensus       149 ~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~-------~~~~~~~~~~l~~~~~~~~  221 (310)
                              ..+.+|||||+.++       ...+...+..||++++|+|+++...       .+..+.+ ..+..     .
T Consensus        95 --------~~~~iiDTPGh~~f-------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l-~~~~~-----~  153 (439)
T 3j2k_7           95 --------KHFTILDAPGHKSF-------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHA-MLAKT-----A  153 (439)
T ss_pred             --------eEEEEEECCChHHH-------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHH-HHHHH-----c
Confidence                    27999999998654       4455667789999999999987543       1222222 22332     3


Q ss_pred             CCC-EEEEEeCCCCCCc---HhH----HHHHHHHHHhcC--------CCccccCccCCHHHHHH
Q 021615          222 ERP-FIVVLNKIDLPEA---RDR----LQSLTEEILKIG--------CDKVTSETELSSEDAVK  269 (310)
Q Consensus       222 ~~p-~ivv~NK~Dl~~~---~~~----~~~l~~~l~~~g--------~~~~sa~~~~gi~~l~~  269 (310)
                      +.| +++|+||+|+...   .+.    .+++.+.+..++        +.++||++|.|+.++.+
T Consensus       154 ~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          154 GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            567 8999999999642   122    233444444444        44589999999998554

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.71  E-value=6.7e-17  Score=156.32  Aligned_cols=152  Identities=18%  Similarity=0.195  Sum_probs=102.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCC-------CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAK-------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG  174 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~-------~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~  174 (310)
                      ..+|+++|.+|+|||||+++|++..       ......+++|.+.....+....        ..+.+|||||+.+     
T Consensus        19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--------~~i~iiDtPGh~~-----   85 (482)
T 1wb1_A           19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--------YRITLVDAPGHAD-----   85 (482)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--------EEEEECCCSSHHH-----
T ss_pred             CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--------EEEEEEECCChHH-----
Confidence            4689999999999999999999876       1223445666655544444321        2799999999854     


Q ss_pred             chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhc
Q 021615          175 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKI  251 (310)
Q Consensus       175 ~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~  251 (310)
                        +...+...+..+|++++|+|+++....+..+.+ ..+..     .+.|.++|+||+|+.+...   ..+++.+.+...
T Consensus        86 --~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~  157 (482)
T 1wb1_A           86 --LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILDH-----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST  157 (482)
T ss_dssp             --HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred             --HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH-HHHHH-----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhh
Confidence              345666778899999999999986555554443 23443     3688999999999986422   223444444433


Q ss_pred             ------CCCccccCccCCHHHHHHHHhhc
Q 021615          252 ------GCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       252 ------g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                            .+..+||+++.|+.++++.+...
T Consensus       158 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~  186 (482)
T 1wb1_A          158 HNLKNSSIIPISAKTGFGVDELKNLIITT  186 (482)
T ss_dssp             SSGGGCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHHh
Confidence                  34558999999999999988764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.71  E-value=4e-17  Score=145.65  Aligned_cols=128  Identities=15%  Similarity=0.098  Sum_probs=88.3

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ...+|+++|.+|+|||||+|+|++.... +.+++++|.......+....        ..+.+|||||+.++........+
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~l~liDTpG~~~~~~~~~~~~~  106 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--------FTINIIDTPGLVEAGYVNHQALE  106 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--------EEEEEEECCCSEETTEECHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--------eeEEEEECCCCCCcccchHHHHH
Confidence            3468999999999999999999998763 47788888877666665443        27999999999887554443333


Q ss_pred             HHHHHh--hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          180 NFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       180 ~~~~~l--~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                      .+.+.+  ..+|+++||+|++..........+.+.+.........+|+++|+||+|+..
T Consensus       107 ~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          107 LIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             HHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             HHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence            333333  278999999887654332222345556654322112359999999999963

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.71  E-value=6.6e-17  Score=144.82  Aligned_cols=128  Identities=18%  Similarity=0.132  Sum_probs=85.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .++|+++|.+|+|||||+|+|++.... +.+++.+|..+....+....        ..+.+|||||+.++..........
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~l~iiDTpG~~~~~~~~~~~~~~  110 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--------FTLNIIDTPGLIEGGYINDMALNI  110 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--------EEEEEEECCCSEETTEECHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--------eEEEEEECCCCCCCccchHHHHHH
Confidence            468999999999999999999988753 46777777765555444332        279999999998765433333333


Q ss_pred             HHHHh--hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          181 FLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       181 ~~~~l--~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      +.+++  ..+|+++||+|++..........+...+.........+|+++|+||+|+...
T Consensus       111 i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          111 IKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             HHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             HHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence            33332  3799999998876532222223455556543211112699999999999754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.70  E-value=5.3e-17  Score=148.62  Aligned_cols=155  Identities=21%  Similarity=0.208  Sum_probs=100.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      ||+++|.+|||||||++++.+..... .....+|.......+..         .-+++||||||+.++..  ..+  ...
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~---------~v~LqIWDTAGQErf~~--~~l--~~~   67 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST---------LIDLAVMELPGQLNYFE--PSY--DSE   67 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECS---------SSCEEEEECCSCSSSCC--CSH--HHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEcc---------EEEEEEEECCCchhccc--hhh--hhh
Confidence            68999999999999999988653221 22233444444433321         12799999999988731  111  113


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHH---HHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------HHHHHHHHHh--
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTV---KEELRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILK--  250 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~---~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------~~~l~~~l~~--  250 (310)
                      .+++.++++++|+|+++. ..+....|   ..++..+.   .+.|+++|+||+|+....++       ..+..+.+.+  
T Consensus        68 ~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~---~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~  143 (331)
T 3r7w_B           68 RLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVN---PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG  143 (331)
T ss_dssp             HHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHC---TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred             hhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcC---CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc
Confidence            446799999999999987 33444444   33444433   36899999999999875331       1122222322  


Q ss_pred             -----cCCCccccCccCCHHHHHHHHhhccC
Q 021615          251 -----IGCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       251 -----~g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                           +.+.++||++ .++.++|..++....
T Consensus       144 ~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li  173 (331)
T 3r7w_B          144 LDGVQVSFYLTSIFD-HSIYEAFSRIVQKLI  173 (331)
T ss_dssp             CSCCCEEEECCCSSS-SHHHHHHHHHHTTSS
T ss_pred             ccccCceEEEeccCC-CcHHHHHHHHHHHHH
Confidence                 2345689998 589999999887664

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.70  E-value=5.2e-17  Score=148.14  Aligned_cols=112  Identities=20%  Similarity=0.295  Sum_probs=68.1

Q ss_pred             ceEEEeCCCCCcccc------CCchHHHHHHHHhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 021615          158 EATLADLPGLIEGAH------LGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLN  230 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~------~~~~l~~~~~~~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~N  230 (310)
                      .+.+|||||+.+...      ....+...+..++..+|++++|+|+++.. ...+...+.+.+..     .+.|+++|+|
T Consensus       132 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-----~~~~~i~v~N  206 (315)
T 1jwy_B          132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-----EGKRTIGVIT  206 (315)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-----SCSSEEEEEE
T ss_pred             CcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC-----CCCcEEEEEc
Confidence            799999999976321      12335556677889999999999985432 22222234444433     4689999999


Q ss_pred             CCCCCCcHh-HHHHHHHHHHh--cCCCc---cccCc---cCCHHHHHHHHhhc
Q 021615          231 KIDLPEARD-RLQSLTEEILK--IGCDK---VTSET---ELSSEDAVKSLSTE  274 (310)
Q Consensus       231 K~Dl~~~~~-~~~~l~~~l~~--~g~~~---~sa~~---~~gi~~l~~~l~~~  274 (310)
                      |+|+..... ..+.+...+..  .++..   +|+..   +.|+.+++..+...
T Consensus       207 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~  259 (315)
T 1jwy_B          207 KLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILY  259 (315)
T ss_dssp             CTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHH
T ss_pred             CcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHH
Confidence            999986533 22222221112  23333   45555   78888888776543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.69  E-value=1.6e-16  Score=156.81  Aligned_cols=159  Identities=19%  Similarity=0.219  Sum_probs=104.8

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCC---------C------CCCceeeccceEeeCCCCCCCccCCCceEEEeC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA---------D------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL  164 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~---------~------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~Dt  164 (310)
                      +.+++|+++|.+|+|||||+++|+.....+.         +      ..+.|.......+.+... ++..  ..+++|||
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~-dg~~--~~inliDT   80 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAK-DGNT--YKLHLIDT   80 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECT-TSCE--EEEEEECC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcC-CCCe--EEEEEEEC
Confidence            4567899999999999999999976321110         0      123344333333322110 1111  27899999


Q ss_pred             CCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHH
Q 021615          165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL  244 (310)
Q Consensus       165 PG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l  244 (310)
                      ||+.++.       ..+.+.+..||++++|+|++++...+....|...+.      .+.|+++|+||+|+..+.  .+..
T Consensus        81 PGh~dF~-------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~------~~ipiIvviNKiDl~~a~--~~~v  145 (600)
T 2ywe_A           81 PGHVDFS-------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE------QDLVIIPVINKIDLPSAD--VDRV  145 (600)
T ss_dssp             CCSGGGH-------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--HHHH
T ss_pred             CCcHhHH-------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH------CCCCEEEEEeccCccccC--HHHH
Confidence            9997752       345567789999999999999887777776665543      378999999999998653  2233


Q ss_pred             HHHHH-hcC-----CCccccCccCCHHHHHHHHhhccC
Q 021615          245 TEEIL-KIG-----CDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       245 ~~~l~-~~g-----~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      .+.+. .++     +..+||+++.|+.++++.+.....
T Consensus       146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence            33333 334     456899999999999999877553

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.69  E-value=4.6e-17  Score=158.87  Aligned_cols=119  Identities=21%  Similarity=0.239  Sum_probs=85.8

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC----------------CC------CCCceeeccceEeeCCCCCCCccC
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------AD------YPFTTLMPNLGRLDGDPTLGAEKY  155 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i----------------~~------~~~tT~~~~~~~v~~~~~~~~~~~  155 (310)
                      +....++|+|+|.+|||||||+++|+.....+                .+      ..++|.......+.+..       
T Consensus         9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-------   81 (528)
T 3tr5_A            9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD-------   81 (528)
T ss_dssp             HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT-------
T ss_pred             hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC-------
Confidence            45567789999999999999999997322111                00      13445544444454332       


Q ss_pred             CCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                       ..+++|||||+.++..       .+.++++.+|++|+|+|+++....+....| ..+..     .++|+++|+||+|+.
T Consensus        82 -~~i~liDTPG~~df~~-------~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~-----~~iPiivviNK~Dl~  147 (528)
T 3tr5_A           82 -YLINLLDTPGHADFTE-------DTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL-----RHTPIMTFINKMDRD  147 (528)
T ss_dssp             -EEEEEECCCCSTTCCH-------HHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT-----TTCCEEEEEECTTSC
T ss_pred             -EEEEEEECCCchhHHH-------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH-----cCCCEEEEEeCCCCc
Confidence             2799999999987632       466788899999999999988777765544 45554     378999999999997


Q ss_pred             Cc
Q 021615          236 EA  237 (310)
Q Consensus       236 ~~  237 (310)
                      ..
T Consensus       148 ~~  149 (528)
T 3tr5_A          148 TR  149 (528)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.69  E-value=1.7e-16  Score=136.76  Aligned_cols=121  Identities=19%  Similarity=0.223  Sum_probs=77.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ..++|+++|++|+|||||+++|++......   .++..+..+. .+.        ...+.+|||||+.+..    .....
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~-~~~--------~~~~~l~Dt~G~~~~~----~~~~~   74 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-DYD--------GSGVTLVDFPGHVKLR----YKLSD   74 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEET-TGG--------GSSCEEEECCCCGGGT----HHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEE-Eee--------CceEEEEECCCcHHHH----HHHHH
Confidence            457899999999999999999998763221   0011111111 001        1278999999997652    22223


Q ss_pred             HHH-HhhhcCEEEEecccC-CCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCc
Q 021615          181 FLR-HLRRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       181 ~~~-~l~~~d~il~VvD~s-~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~  237 (310)
                      +++ .+..+|++++|+|++ +..++.....+..++.....  ...+.|+++|+||+|+...
T Consensus        75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  135 (218)
T 1nrj_B           75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  135 (218)
T ss_dssp             HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence            322 233489999999999 66666666555555543210  0136899999999999865

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.68  E-value=4.4e-17  Score=144.89  Aligned_cols=86  Identities=16%  Similarity=0.144  Sum_probs=62.6

Q ss_pred             hcCEEEEecccCCC--CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh---cCCCccccCcc
Q 021615          187 RTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDKVTSETE  261 (310)
Q Consensus       187 ~~d~il~VvD~s~~--~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~---~g~~~~sa~~~  261 (310)
                      .||++++|+|++++  .+++.+..|..++..+.. ..+.|+++|+||+|+..... .++..+....   ..+.++||+++
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~~~-v~~~~~~~~~~~~~~~~e~SAk~g  239 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVERY-IRDAHTFALSKKNLQVVETSARSN  239 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCHHH-HHHHHHHHHTSSSCCEEECBTTTT
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccccccHH-HHHHHHHHHhcCCCeEEEEECCCC
Confidence            58999999999997  888888888887765410 13689999999999976433 2333333332   34556999999


Q ss_pred             CCHHHHHHHHhhc
Q 021615          262 LSSEDAVKSLSTE  274 (310)
Q Consensus       262 ~gi~~l~~~l~~~  274 (310)
                      .|++++|..++..
T Consensus       240 ~gv~elf~~l~~~  252 (255)
T 3c5h_A          240 VNVDLAFSTLVQL  252 (255)
T ss_dssp             BSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999998654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.68  E-value=1.8e-16  Score=156.53  Aligned_cols=159  Identities=19%  Similarity=0.248  Sum_probs=100.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCC---------------CCCCceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIA---------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP  165 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~---------------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP  165 (310)
                      .+.+|+++|.+++|||||+++|+.....+.               ...+.|.......+.+... .+..  ..+++||||
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~-~g~~--~~l~liDTP   79 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS-DGET--YQLNFIDTP   79 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECT-TSCE--EEEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecC-CCCe--EEEEEEECC
Confidence            456899999999999999999986432211               0123344333333322110 1111  278999999


Q ss_pred             CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHH
Q 021615          166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQS  243 (310)
Q Consensus       166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~  243 (310)
                      |+.++       ...+.+.+..||++++|+|+++....+....|...+.      .+.|+++|+||+|+.++.  +..++
T Consensus        80 Gh~dF-------~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~------~~ipiIvViNKiDl~~a~~~~v~~e  146 (599)
T 3cb4_D           80 GHVDF-------SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME------MDLEVVPVLNKIDLPAADPERVAEE  146 (599)
T ss_dssp             CCGGG-------HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH------TTCEEEEEEECTTSTTCCHHHHHHH
T ss_pred             CchHH-------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEeeeccCcccccHHHHHHH
Confidence            99765       2345667789999999999999887777777765554      378999999999998653  12233


Q ss_pred             HHHHHHhc---CCCccccCccCCHHHHHHHHhhccC
Q 021615          244 LTEEILKI---GCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       244 l~~~l~~~---g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      +.+.+ .+   .+..+||+++.|+.++++.+.....
T Consensus       147 i~~~l-g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          147 IEDIV-GIDATDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             HHHHT-CCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             HHHHh-CCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence            33222 11   2456899999999999999876553

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.68  E-value=1.7e-16  Score=150.51  Aligned_cols=163  Identities=18%  Similarity=0.150  Sum_probs=104.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeC-----------CCCCC--CccC--CCceEEE
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDG-----------DPTLG--AEKY--SSEATLA  162 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~-----------~~~~~--~~~~--~~~~~i~  162 (310)
                      ...+|+++|.+|+|||||+++|++.....   ...++.|+.........           ....+  ...+  ...+.+|
T Consensus         9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   88 (410)
T 1kk1_A            9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   88 (410)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence            44689999999999999999999764321   22344555332221111           00000  0000  1379999


Q ss_pred             eCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--
Q 021615          163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--  239 (310)
Q Consensus       163 DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--  239 (310)
                      ||||+.++       ...+.+.+..+|++++|+|+++.. ..+..+.+ ..+..+    ...|+++|+||+|+.+...  
T Consensus        89 DtPGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~~----~~~~iivviNK~Dl~~~~~~~  156 (410)
T 1kk1_A           89 DAPGHEAL-------MTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQII----GQKNIIIAQNKIELVDKEKAL  156 (410)
T ss_dssp             ECSSHHHH-------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHH----TCCCEEEEEECGGGSCHHHHH
T ss_pred             ECCChHHH-------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc----CCCcEEEEEECccCCCHHHHH
Confidence            99998543       445667778899999999999764 33333333 233332    1358999999999987542  


Q ss_pred             -HHHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhhcc
Q 021615          240 -RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       240 -~~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                       ..+++.+.+..     ..+..+|++++.|+.++++.+....
T Consensus       157 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          157 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence             33445555543     2455689999999999999987644

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.68  E-value=2.6e-16  Score=132.76  Aligned_cols=123  Identities=19%  Similarity=0.208  Sum_probs=77.4

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ...++|+++|.+|||||||+++|++......   ..+..+.... .+.        ...+.+|||||+.+...   .+..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~---~~~~~~~~~~-~~~--------~~~~~l~Dt~G~~~~~~---~~~~  110 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-DYD--------GSGVTLVDFPGHVKLRY---KLSD  110 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCC--------CTTCSEEEETTCCBSSC---CHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc---cccCCCceee-eec--------CCeEEEEECCCCchHHH---HHHH
Confidence            4557999999999999999999998763220   0111111111 111        12789999999976532   2223


Q ss_pred             HHHHHhhhcCEEEEecccC-CCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCc
Q 021615          180 NFLRHLRRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s-~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .+...+..+|++++|+|++ +..++.....++.++.....  ...+.|+++|+||+|+.+.
T Consensus       111 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          111 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  171 (193)
T ss_dssp             HHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             HHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence            3334455699999999998 65556555555544432210  1136899999999999864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.67  E-value=1.6e-16  Score=159.96  Aligned_cols=167  Identities=17%  Similarity=0.136  Sum_probs=107.2

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccce--------EeeC-CCC---------------CC--
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLG--------RLDG-DPT---------------LG--  151 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~--------~v~~-~~~---------------~~--  151 (310)
                      .+..++|+|+|.+|+|||||+|+|++.+..+ +..|.|.. +...        ++.. +..               ..  
T Consensus        66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~-~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~  144 (695)
T 2j69_A           66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAV-LTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPA  144 (695)
T ss_dssp             HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCC-CEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccc-eEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHH
Confidence            4567899999999999999999999987554 55555521 0000        0000 000               00  


Q ss_pred             ------------------------CccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHH
Q 021615          152 ------------------------AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR  207 (310)
Q Consensus       152 ------------------------~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~  207 (310)
                                              ...+...+.+|||||+.+...    .......+++.||+++||+|++++.+..+..
T Consensus       145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~  220 (695)
T 2j69_A          145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQPCTLGERR  220 (695)
T ss_dssp             HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHH
T ss_pred             HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCccchhHHH
Confidence                                    000003699999999876421    2334556778999999999999887777766


Q ss_pred             HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----h---HHH----HHH----HHHHh-----------cCCCccccC--
Q 021615          208 TVKEELRMYNPDYLERPFIVVLNKIDLPEAR----D---RLQ----SLT----EEILK-----------IGCDKVTSE--  259 (310)
Q Consensus       208 ~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~---~~~----~l~----~~l~~-----------~g~~~~sa~--  259 (310)
                      .|.+.+..     .+.|+++|+||+|+....    +   ..+    .+.    ..+..           ..+..+|++  
T Consensus       221 ~l~~~l~~-----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~a  295 (695)
T 2j69_A          221 YLENYIKG-----RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQA  295 (695)
T ss_dssp             HHHHHTTT-----SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHH
T ss_pred             HHHHHHHh-----hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHH
Confidence            66545443     367899999999986432    0   111    121    22221           134568999  


Q ss_pred             ------------ccCCHHHHHHHHhhcc
Q 021615          260 ------------TELSSEDAVKSLSTEG  275 (310)
Q Consensus       260 ------------~~~gi~~l~~~l~~~~  275 (310)
                                  ++.|+.+++..+....
T Consensus       296 l~~~~~~~~~~~~~~Gi~~L~~~L~~~l  323 (695)
T 2j69_A          296 LRRRLKNPQADLDGTGFPKFMDSLNTFL  323 (695)
T ss_dssp             HHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred             HHhhccCchhhhhccCHHHHHHHHHHHH
Confidence                        9999999998876544

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.67  E-value=4.7e-16  Score=147.40  Aligned_cols=163  Identities=17%  Similarity=0.149  Sum_probs=97.7

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeC-----------CCCCC--CccC--CCceEEE
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDG-----------DPTLG--AEKY--SSEATLA  162 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~-----------~~~~~--~~~~--~~~~~i~  162 (310)
                      ...+|+++|.+++|||||+++|++.....   ...++.|..........           ....+  +..+  ...+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            34679999999999999999999764322   22344455432211110           00000  0000  1379999


Q ss_pred             eCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH---
Q 021615          163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---  238 (310)
Q Consensus       163 DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~---  238 (310)
                      ||||+.++       ...+.+.+..+|++++|+|++++. ..+..+.+ ..+..+    ...|+++|+||+|+.+..   
T Consensus        87 DtPGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~l----~~~~iivv~NK~Dl~~~~~~~  154 (408)
T 1s0u_A           87 DSPGHETL-------MATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MALEIL----GIDKIIIVQNKIDLVDEKQAE  154 (408)
T ss_dssp             ECSSHHHH-------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHHHHT----TCCCEEEEEECTTSSCTTTTT
T ss_pred             ECCCHHHH-------HHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHHHHc----CCCeEEEEEEccCCCCHHHHH
Confidence            99998543       345556677889999999999764 33333333 233332    235899999999997643   


Q ss_pred             hHHHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhhcc
Q 021615          239 DRLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       239 ~~~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +..+++.+.+..     ..+.++||+++.|++++++.+....
T Consensus       155 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          155 ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            234555555543     3455689999999999999987644

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.66  E-value=2.2e-16  Score=156.71  Aligned_cols=147  Identities=16%  Similarity=0.132  Sum_probs=98.5

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC-------------------------------CCCceeeccceEeeCCC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-------------------------------YPFTTLMPNLGRLDGDP  148 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~-------------------------------~~~tT~~~~~~~v~~~~  148 (310)
                      +...+|+++|.+|+|||||+++|++....+..                               .+++|.+.....+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            45679999999999999999999977543322                               14566666655555432


Q ss_pred             CCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-------cHHHHHHHHHHHHhcCCCCC
Q 021615          149 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYL  221 (310)
Q Consensus       149 ~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-------~~~~~~~~~~~l~~~~~~~~  221 (310)
                              ..++||||||+.++       ...+...+..+|++|+|+|++++.       ..+..+ ....+..     .
T Consensus       245 --------~~~~iiDTPG~e~f-------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e-~l~~~~~-----l  303 (611)
T 3izq_1          245 --------ANFTIVDAPGHRDF-------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASS-----L  303 (611)
T ss_dssp             --------CEEEEEECCSSSCH-------HHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH-HHHHHHT-----T
T ss_pred             --------ceEEEEECCCCccc-------HHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHH-HHHHHHH-----c
Confidence                    27999999999653       445566778999999999998631       111211 2222222     2


Q ss_pred             C-CCEEEEEeCCCCCCc-HhH----HHHHHHHHHhcC-------CCccccCccCCHHHH
Q 021615          222 E-RPFIVVLNKIDLPEA-RDR----LQSLTEEILKIG-------CDKVTSETELSSEDA  267 (310)
Q Consensus       222 ~-~p~ivv~NK~Dl~~~-~~~----~~~l~~~l~~~g-------~~~~sa~~~~gi~~l  267 (310)
                      + .|+++|+||+|+.+. ...    .+.+...+..++       +..+||++|.|+.++
T Consensus       304 gi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          304 GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             CCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            4 459999999999862 222    233444444444       355899999999865

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.66  E-value=9.2e-17  Score=150.71  Aligned_cols=118  Identities=33%  Similarity=0.618  Sum_probs=70.5

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC---------CCccCCCceEEEeCCCCC
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL---------GAEKYSSEATLADLPGLI  168 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~---------~~~~~~~~~~i~DtPG~~  168 (310)
                      .++...+|++||.||||||||+|+|++....++++||||..|+.+.+......         +.......+.+|||||+.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~   97 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV   97 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence            34456789999999999999999999998877999999999999988753210         000012258999999999


Q ss_pred             ccccCCchHHHHHHHHhhhcCEEEEecccCCC----------CcHHHHHHHHHHHHh
Q 021615          169 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEELRM  215 (310)
Q Consensus       169 ~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~----------~~~~~~~~~~~~l~~  215 (310)
                      ++++.+.+++..|+.+++.||++++|+|+++.          ++..+++.+..+|..
T Consensus        98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l  154 (396)
T 2ohf_A           98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQL  154 (396)
T ss_dssp             ---------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhh
Confidence            98887788888999999999999999999752          556677777666644

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.66  E-value=5.4e-16  Score=150.07  Aligned_cols=148  Identities=15%  Similarity=0.124  Sum_probs=94.7

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDP  148 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~  148 (310)
                      +...+|+++|.+|+|||||+++|++....+                               ....++|.+.....+....
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            456789999999999999999998652111                               1223555555444444332


Q ss_pred             CCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcH------HHHHHHHHHHHhcCCCCCC
Q 021615          149 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLE  222 (310)
Q Consensus       149 ~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~------~~~~~~~~~l~~~~~~~~~  222 (310)
                              ..+.||||||+.++       ...+...+..+|++++|+|++++...      .........+...    .-
T Consensus       111 --------~~~~iiDTPG~~~f-------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~----~~  171 (483)
T 3p26_A          111 --------ANFTIVDAPGHRDF-------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL----GI  171 (483)
T ss_dssp             --------CEEEEECCCCCGGG-------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT----TC
T ss_pred             --------ceEEEEECCCcHHH-------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc----CC
Confidence                    27999999999654       45667778899999999999885321      1222222233332    12


Q ss_pred             CCEEEEEeCCCCCCc-HhHHH----HHHHHHHhcC-------CCccccCccCCHHH
Q 021615          223 RPFIVVLNKIDLPEA-RDRLQ----SLTEEILKIG-------CDKVTSETELSSED  266 (310)
Q Consensus       223 ~p~ivv~NK~Dl~~~-~~~~~----~l~~~l~~~g-------~~~~sa~~~~gi~~  266 (310)
                      .|+++|+||+|+.+. ....+    .+.+.+..++       +.++||+++.|+.+
T Consensus       172 ~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          172 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             CCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             CcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            569999999999862 22223    3333444333       35689999999975

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.65  E-value=1.6e-17  Score=160.52  Aligned_cols=151  Identities=19%  Similarity=0.240  Sum_probs=102.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      +.++|+++|.+|+|||||+++|.+........+++|.+.....+....        ..+++|||||+.++....      
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--------~~i~~iDTPGhe~f~~~~------   68 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--------GMITFLDTPGHAAFTSMR------   68 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--------SCCCEECCCTTTCCTTSB------
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--------EEEEEEECCCcHHHHHHH------
Confidence            357899999999999999999997654444445666654443333221        278999999998774431      


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------h---
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------K---  250 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~---  250 (310)
                       .+.+..+|++++|+|+++....+..+.+ ..+..     .+.|+++++||+|+.+...  +.+...+.       .   
T Consensus        69 -~~~~~~aD~aILVVda~~g~~~qT~e~l-~~~~~-----~~vPiIVviNKiDl~~~~~--~~v~~~l~~~~~~~~~~~~  139 (501)
T 1zo1_I           69 -ARGAQATDIVVLVVAADDGVMPQTIEAI-QHAKA-----AQVPVVVAVNKIDKPEADP--DRVKNELSQYGILPEEWGG  139 (501)
T ss_dssp             -CSSSBSCSSEEEEEETTTBSCTTTHHHH-HHHHH-----TTCCEEEEEECSSSSTTCC--CCTTCCCCCCCCCTTCCSS
T ss_pred             -HHHHhhCCEEEEEeecccCccHHHHHHH-HHHHh-----cCceEEEEEEeccccccCH--HHHHHHHHHhhhhHHHhCC
Confidence             2446789999999999885444444433 23333     3789999999999975311  01111111       1   


Q ss_pred             -cCCCccccCccCCHHHHHHHHhhc
Q 021615          251 -IGCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       251 -~g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                       ..+.++||+++.|+.++++.+...
T Consensus       140 ~~~~v~vSAktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          140 ESQFVHVSAKAGTGIDELLDAILLQ  164 (501)
T ss_dssp             SCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred             CccEEEEeeeeccCcchhhhhhhhh
Confidence             235558999999999999998654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.65  E-value=3.3e-16  Score=148.33  Aligned_cols=142  Identities=19%  Similarity=0.180  Sum_probs=93.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC---CCC--C-CC-----------CCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA---KPD--I-AD-----------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  163 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~---~~~--i-~~-----------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D  163 (310)
                      ...+|+++|.+|+|||||+++|++.   ...  . ..           ..+.|.......+...        ...+.+||
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------~~~~~iiD   81 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA--------KRHYSHVD   81 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS--------SCEEEEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC--------CeEEEEEE
Confidence            3468999999999999999999973   110  0 00           1233433322223222        13799999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHH-
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL-  241 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~-  241 (310)
                      |||+.++       .......+..+|++++|+|+++....+.. .++..+..     .+.| +++|+||+|+.+..+.. 
T Consensus        82 tpG~~~f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt~-~~l~~~~~-----~~ip~iivviNK~Dl~~~~~~~~  148 (405)
T 2c78_A           82 CPGHADY-------IKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ-----VGVPYIVVFMNKVDMVDDPELLD  148 (405)
T ss_dssp             CCCSGGG-------HHHHHHHHTTCSSEEEEEETTTCCCHHHH-HHHHHHHH-----TTCCCEEEEEECGGGCCCHHHHH
T ss_pred             CCChHHH-------HHHHHHHHHHCCEEEEEEECCCCCcHHHH-HHHHHHHH-----cCCCEEEEEEECccccCcHHHHH
Confidence            9999764       34556677899999999999987655543 34455554     3678 88999999998543322 


Q ss_pred             ---HHHHHHHHhcC-------CCccccCccCC
Q 021615          242 ---QSLTEEILKIG-------CDKVTSETELS  263 (310)
Q Consensus       242 ---~~l~~~l~~~g-------~~~~sa~~~~g  263 (310)
                         +++.+.+..++       +..+||+++.|
T Consensus       149 ~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          149 LVEMEVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence               24445555544       34489999887

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.65  E-value=7.9e-16  Score=144.01  Aligned_cols=141  Identities=12%  Similarity=0.104  Sum_probs=97.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      +|+++|.+|+|||||+++|+.        .++|.+.....+....        ..+.+|||||+.++       ......
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~~--------~~i~iiDtPGh~~f-------~~~~~~   79 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKEG--------RNMVFVDAHSYPKT-------LKSLIT   79 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSSS--------SEEEEEECTTTTTC-------HHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecCC--------eEEEEEECCChHHH-------HHHHHH
Confidence            899999999999999999992        2455544444443321        27999999999765       234456


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCE-EEEEe-CCCCCCcHh---HHHHHHHHHHhc-----CC
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLN-KIDLPEARD---RLQSLTEEILKI-----GC  253 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~-ivv~N-K~Dl~~~~~---~~~~l~~~l~~~-----g~  253 (310)
                      .+..+|++++|+| ......+ ...++..+..     .+.|. ++++| |+|+ +...   ..+++.+.+...     .+
T Consensus        80 ~~~~aD~ailVvd-~~g~~~q-t~e~~~~~~~-----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~i  151 (370)
T 2elf_A           80 ALNISDIAVLCIP-PQGLDAH-TGECIIALDL-----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWEC  151 (370)
T ss_dssp             HHHTCSEEEEEEC-TTCCCHH-HHHHHHHHHH-----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEE
T ss_pred             HHHHCCEEEEEEc-CCCCcHH-HHHHHHHHHH-----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEE
Confidence            6789999999999 6544333 3444445554     36777 89999 9999 5422   123344444333     34


Q ss_pred             Cc--cccCc---cCCHHHHHHHHhhcc
Q 021615          254 DK--VTSET---ELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 ~~--~sa~~---~~gi~~l~~~l~~~~  275 (310)
                      .+  +||++   +.|++++++.+....
T Consensus       152 i~~~~SA~~~~~g~gi~~L~~~l~~~~  178 (370)
T 2elf_A          152 ISLNTNKSAKNPFEGVDELKARINEVA  178 (370)
T ss_dssp             EECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred             EecccccccCcCCCCHHHHHHHHHhhc
Confidence            55  89999   999999999886544

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.65  E-value=9.7e-16  Score=146.38  Aligned_cols=149  Identities=17%  Similarity=0.122  Sum_probs=94.9

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-----------CCCCCce----------------------eeccceEeeC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-----------ADYPFTT----------------------LMPNLGRLDG  146 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-----------~~~~~tT----------------------~~~~~~~v~~  146 (310)
                      +...+|+++|.+|+|||||+++|++....+           +..++||                      ++.....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            345789999999999999999998764222           1122222                      1111111111


Q ss_pred             CCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCC-CE
Q 021615          147 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER-PF  225 (310)
Q Consensus       147 ~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~-p~  225 (310)
                      .        ...+.+|||||+.++       ...+...+..+|++++|+|++++...+..+ +...+...     +. |+
T Consensus       102 ~--------~~~~~iiDtpGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~-~l~~~~~~-----~~~~i  160 (434)
T 1zun_B          102 A--------KRKFIIADTPGHEQY-------TRNMATGASTCDLAIILVDARYGVQTQTRR-HSYIASLL-----GIKHI  160 (434)
T ss_dssp             S--------SEEEEEEECCCSGGG-------HHHHHHHHTTCSEEEEEEETTTCSCHHHHH-HHHHHHHT-----TCCEE
T ss_pred             C--------CceEEEEECCChHHH-------HHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHHc-----CCCeE
Confidence            1        126899999998654       335556788999999999999876554433 33344432     34 58


Q ss_pred             EEEEeCCCCCCc-HhH----HHHHHHHHHhcC-------CCccccCccCCHHHHHH
Q 021615          226 IVVLNKIDLPEA-RDR----LQSLTEEILKIG-------CDKVTSETELSSEDAVK  269 (310)
Q Consensus       226 ivv~NK~Dl~~~-~~~----~~~l~~~l~~~g-------~~~~sa~~~~gi~~l~~  269 (310)
                      ++|+||+|+.+. .+.    .+++.+.+..++       +.++||+++.|+.+++.
T Consensus       161 IvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          161 VVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             EEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             EEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence            999999999863 222    234444455555       34589999999987543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.63  E-value=1.1e-15  Score=144.25  Aligned_cols=153  Identities=18%  Similarity=0.145  Sum_probs=101.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC--C--------------CCCCceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI--A--------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP  165 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i--~--------------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP  165 (310)
                      ..+|+++|.+|+|||||+++|++.....  +              ...+.|.......+...        ...+.+||||
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------~~~~~iiDtp   74 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA--------ARHYAHTDCP   74 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS--------SCEEEEEECS
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC--------CeEEEEEECC
Confidence            3579999999999999999998741100  0              12234444322223221        1379999999


Q ss_pred             CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHH---
Q 021615          166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL---  241 (310)
Q Consensus       166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~---  241 (310)
                      |+.++       .......+..+|++++|+|+++....+..+.+ ..+..     .+.| +++|+||+|+.+..+..   
T Consensus        75 G~~~f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-----~~vp~iivviNK~Dl~~~~~~~~~~  141 (397)
T 1d2e_A           75 GHADY-------VKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-----IGVEHVVVYVNKADAVQDSEMVELV  141 (397)
T ss_dssp             SHHHH-------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCCEEEEEECGGGCSCHHHHHHH
T ss_pred             ChHHH-------HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCeEEEEEECcccCCCHHHHHHH
Confidence            98653       33455667889999999999987666655544 44444     3678 68999999998533322   


Q ss_pred             -HHHHHHHHhcCC-------CccccCccCC----------HHHHHHHHhhcc
Q 021615          242 -QSLTEEILKIGC-------DKVTSETELS----------SEDAVKSLSTEG  275 (310)
Q Consensus       242 -~~l~~~l~~~g~-------~~~sa~~~~g----------i~~l~~~l~~~~  275 (310)
                       +++.+.+..+++       .++||+++.+          +.++++.+....
T Consensus       142 ~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          142 ELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             HHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence             344555555553       4479988764          788888876543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.63  E-value=4.5e-16  Score=145.08  Aligned_cols=167  Identities=20%  Similarity=0.197  Sum_probs=94.4

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceE-------------eeCCCC---------------
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR-------------LDGDPT---------------  149 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~-------------v~~~~~---------------  149 (310)
                      ....++.|+|||.+|||||||+|+|++..........+|..|....             +.....               
T Consensus        30 i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~  109 (360)
T 3t34_A           30 LWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQD  109 (360)
T ss_dssp             --CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHH
T ss_pred             ccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHH
Confidence            4456789999999999999999999997642211112222111111             100000               


Q ss_pred             -----------CCC--------ccCCCceEEEeCCCCCccccC--C----chHHHHHHHHhhhcCEEEEecccCCCCcHH
Q 021615          150 -----------LGA--------EKYSSEATLADLPGLIEGAHL--G----KGLGRNFLRHLRRTRLLVHVIDAAAENPVN  204 (310)
Q Consensus       150 -----------~~~--------~~~~~~~~i~DtPG~~~~~~~--~----~~l~~~~~~~l~~~d~il~VvD~s~~~~~~  204 (310)
                                 +..        ......+++|||||+.+....  .    ..+......++..+|++++|+|.++.....
T Consensus       110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~  189 (360)
T 3t34_A          110 ETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT  189 (360)
T ss_dssp             HHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG
T ss_pred             HHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC
Confidence                       000        000126899999999875321  1    223444566788999999999987544322


Q ss_pred             HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHH-H--hcCCCccccCccCCHHHHH
Q 021615          205 DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-L--KIGCDKVTSETELSSEDAV  268 (310)
Q Consensus       205 ~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l-~--~~g~~~~sa~~~~gi~~l~  268 (310)
                        ..+...+....+  .+.|+++|+||+|+.+.......+.+.. .  ..++..+++..+.++++.+
T Consensus       190 --~~~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~  252 (360)
T 3t34_A          190 --SDAIKISREVDP--SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNV  252 (360)
T ss_dssp             --CHHHHHHHHSCT--TCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTC
T ss_pred             --HHHHHHHHHhcc--cCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCC
Confidence              122333444433  4689999999999976432211111111 1  2456667777777665543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.62  E-value=3.7e-15  Score=127.39  Aligned_cols=161  Identities=22%  Similarity=0.189  Sum_probs=96.5

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCC--CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC-
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKP--DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-  174 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~--~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~-  174 (310)
                      ......+|+++|++|||||||+|+|++...  .+.+.+++|....  .+...         ..+.+|||||+....... 
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~---------~~~~l~Dt~G~~~~~~~~~   90 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVA---------DGKRLVDLPGYGYAEVPEE   90 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEE---------TTEEEEECCCCC------C
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEec---------CCEEEEECcCCcccccCHH
Confidence            344556899999999999999999998762  2245556655322  22111         157899999986421100 


Q ss_pred             --chH---HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---HHHHHH
Q 021615          175 --KGL---GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTE  246 (310)
Q Consensus       175 --~~l---~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~l~~  246 (310)
                        ..+   ...+......++.+++|+|++......+. .+...+..     .+.|.++|.||+|+....+.   ...+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~-----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~  164 (210)
T 1pui_A           91 MKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD-----SNIAVLVLLTKADKLASGARKAQLNMVRE  164 (210)
T ss_dssp             CHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH-----TTCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH-----cCCCeEEEEecccCCCchhHHHHHHHHHH
Confidence              011   11223333578999999999876554332 23333433     36899999999999875321   234444


Q ss_pred             HHHhcC----CCccccCccCCHHHHHHHHhhcc
Q 021615          247 EILKIG----CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       247 ~l~~~g----~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .+...+    ..++|+.++.|+.++++.+....
T Consensus       165 ~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          165 AVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             HHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence            444432    34589999999999999986644

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.62  E-value=2.5e-15  Score=148.39  Aligned_cols=160  Identities=20%  Similarity=0.167  Sum_probs=99.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCC------CCC-CCc---cCCCceEEEeCCCCCccc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD------PTL-GAE---KYSSEATLADLPGLIEGA  171 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~------~~~-~~~---~~~~~~~i~DtPG~~~~~  171 (310)
                      .++|+++|.+|+|||||+++|++...........|.......+...      ... ...   .....+++|||||+.++.
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~   84 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT   84 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence            4789999999999999999998754211111122322111111100      000 000   001148999999998875


Q ss_pred             cCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-------------
Q 021615          172 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-------------  238 (310)
Q Consensus       172 ~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-------------  238 (310)
                      .+..       +.+..||++++|+|++++...+.++.| ..+..     .+.|+++|+||+|+....             
T Consensus        85 ~~~~-------r~~~~aD~aILVvDa~~Gv~~qT~e~l-~~l~~-----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa  151 (594)
T 1g7s_A           85 TLRK-------RGGALADLAILIVDINEGFKPQTQEAL-NILRM-----YRTPFVVAANKIDRIHGWRVHEGRPFMETFS  151 (594)
T ss_dssp             TSBC-------SSSBSCSEEEEEEETTTCCCHHHHHHH-HHHHH-----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred             HHHH-------HHHhhCCEEEEEEECCCCccHhHHHHH-HHHHH-----cCCeEEEEecccccccccccccCCchHHHHH
Confidence            4322       345679999999999987666665554 34444     378999999999996421             


Q ss_pred             ----h-------HHHHHHHHHHhcC-----------------CCccccCccCCHHHHHHHHhhc
Q 021615          239 ----D-------RLQSLTEEILKIG-----------------CDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       239 ----~-------~~~~l~~~l~~~g-----------------~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                          .       ...++.+.+...+                 +..+||+++.|+.++++.+...
T Consensus       152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~  215 (594)
T 1g7s_A          152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL  215 (594)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhh
Confidence                0       1122333443333                 3448999999999999988653

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.61  E-value=4.1e-17  Score=161.44  Aligned_cols=145  Identities=20%  Similarity=0.236  Sum_probs=76.9

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDP  148 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~  148 (310)
                      +...+|+++|.+|+|||||+++|++....+                               ...+++|+......+....
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~  254 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK  254 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence            455689999999999999999997432111                               0123455544444333221


Q ss_pred             CCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-------cHHHHHHHHHHHHhcCCCCC
Q 021615          149 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYL  221 (310)
Q Consensus       149 ~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-------~~~~~~~~~~~l~~~~~~~~  221 (310)
                              ..+.||||||+.++...       ....+..||++|+|||++++.       ..+..+.+ ..+..     .
T Consensus       255 --------~~i~iiDTPGh~~f~~~-------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-~~~~~-----l  313 (592)
T 3mca_A          255 --------KIYEIGDAPGHRDFISG-------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-YLLRA-----L  313 (592)
T ss_dssp             ------------CCEEESSSEEEEE-------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-HHHHH-----S
T ss_pred             --------eEEEEEECCChHHHHHH-------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-HHHHH-----c
Confidence                    27899999999876432       123445799999999998642       22222222 23333     3


Q ss_pred             CCC-EEEEEeCCCCCC-cHhHH----HHHHHHH-HhcCC-------CccccCccCCHH
Q 021615          222 ERP-FIVVLNKIDLPE-ARDRL----QSLTEEI-LKIGC-------DKVTSETELSSE  265 (310)
Q Consensus       222 ~~p-~ivv~NK~Dl~~-~~~~~----~~l~~~l-~~~g~-------~~~sa~~~~gi~  265 (310)
                      +.| +|+|+||+|+.+ ..+..    .++.+.+ ..+++       ..+||++|.|+.
T Consensus       314 gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          314 GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            565 899999999976 22333    3444444 33444       458999999998

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.60  E-value=5.8e-16  Score=144.05  Aligned_cols=168  Identities=21%  Similarity=0.250  Sum_probs=93.4

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCC-----C-CCCCC----------------------ceeeccce-------Eee
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPD-----I-ADYPF----------------------TTLMPNLG-------RLD  145 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-----i-~~~~~----------------------tT~~~~~~-------~v~  145 (310)
                      ..++|+|+|.+|||||||+|+|++.+..     + +..|.                      +|......       .+.
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            4579999999999999999999998642     1 22232                      11110000       000


Q ss_pred             C--CCCCCC-------ccCCCceEEEeCCCCCccccC--Cc----hHHHHHHHHhhhc-CEEEEecccCCCCcHHHHHHH
Q 021615          146 G--DPTLGA-------EKYSSEATLADLPGLIEGAHL--GK----GLGRNFLRHLRRT-RLLVHVIDAAAENPVNDYRTV  209 (310)
Q Consensus       146 ~--~~~~~~-------~~~~~~~~i~DtPG~~~~~~~--~~----~l~~~~~~~l~~~-d~il~VvD~s~~~~~~~~~~~  209 (310)
                      +  ......       ......+++|||||+.+....  ..    .+......++..+ +++++|+|++......+...+
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i  189 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV  189 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence            0  000000       000137999999999764321  11    2333344455444 566667776653333333234


Q ss_pred             HHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHH-HHHh--c---CCCccccCccCCHHHHHHHHhh
Q 021615          210 KEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE-EILK--I---GCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       210 ~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~-~l~~--~---g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      .+++.   +  .+.|+++|+||+|+.+.......+.+ ....  .   .+..+|++++.|+.++++.+..
T Consensus       190 ~~~~~---~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          190 AKEVD---P--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHC---T--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHhC---c--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            34443   2  47899999999999764321111111 1111  1   2455899999999999988765

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.60  E-value=1.8e-15  Score=147.75  Aligned_cols=153  Identities=18%  Similarity=0.169  Sum_probs=96.5

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCC----------------------CCCCceeeccceEeeCCCCCCCccC
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIA----------------------DYPFTTLMPNLGRLDGDPTLGAEKY  155 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~----------------------~~~~tT~~~~~~~v~~~~~~~~~~~  155 (310)
                      ..+...+|+++|.+|+|||||+++|+.....+.                      ...++|.......+.+.        
T Consensus         9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--------   80 (529)
T 2h5e_A            9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH--------   80 (529)
T ss_dssp             HHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET--------
T ss_pred             hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC--------
Confidence            345668899999999999999999996432110                      01122222222223222        


Q ss_pred             CCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      +..+.+|||||+.++.       ....+++..+|++++|+|+++....+. ..++..+..     .+.|+++|+||+|+.
T Consensus        81 ~~~i~liDTPG~~df~-------~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~-----~~ipiivviNK~Dl~  147 (529)
T 2h5e_A           81 DCLVNLLDTPGHEDFS-------EDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL-----RDTPILTFMNKLDRD  147 (529)
T ss_dssp             TEEEEEECCCCSTTCC-------HHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT-----TTCCEEEEEECTTSC
T ss_pred             CeEEEEEECCCChhHH-------HHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH-----cCCCEEEEEcCcCCc
Confidence            1279999999997763       245677889999999999998655443 334444433     378999999999998


Q ss_pred             CcHh--HHHHHHHHHHh----cCCCccccCccCCHHHHHHHH
Q 021615          236 EARD--RLQSLTEEILK----IGCDKVTSETELSSEDAVKSL  271 (310)
Q Consensus       236 ~~~~--~~~~l~~~l~~----~g~~~~sa~~~~gi~~l~~~l  271 (310)
                      ....  ..+++.+.+..    ..++..|++++.|+.+++...
T Consensus       148 ~~~~~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~  189 (529)
T 2h5e_A          148 IRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDE  189 (529)
T ss_dssp             CSCHHHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTE
T ss_pred             cccHHHHHHHHHHHhCCCccceecceecccCcceeeehhhhh
Confidence            6532  23444444321    123335777777877776543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.60  E-value=2.5e-15  Score=143.53  Aligned_cols=147  Identities=18%  Similarity=0.175  Sum_probs=91.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCC-------------------------------CCCCceeeccceEeeCCCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPT  149 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~-------------------------------~~~~tT~~~~~~~v~~~~~  149 (310)
                      ...+|+++|.+|+|||||+++|++....+.                               ...++|.+.....+.... 
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~-   83 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-   83 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-
Confidence            346899999999999999999986421110                               023455544443443322 


Q ss_pred             CCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHH-------HHHHHHHHHHhcCCCCCC
Q 021615          150 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVN-------DYRTVKEELRMYNPDYLE  222 (310)
Q Consensus       150 ~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~-------~~~~~~~~l~~~~~~~~~  222 (310)
                             ..+.+|||||+.++       ...+...+..+|++++|+|+++ .+++       +.......+..     .+
T Consensus        84 -------~~~~iiDtpG~~~f-------~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~-----~~  143 (435)
T 1jny_A           84 -------YFFTIIDAPGHRDF-------VKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT-----MG  143 (435)
T ss_dssp             -------CEEEECCCSSSTTH-------HHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH-----TT
T ss_pred             -------eEEEEEECCCcHHH-------HHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH-----cC
Confidence                   27999999999765       3355677889999999999998 4333       22222223333     23


Q ss_pred             -CCEEEEEeCCCCCCc---Hh----HHHHHHHHHHhcC-------CCccccCccCCHHHHH
Q 021615          223 -RPFIVVLNKIDLPEA---RD----RLQSLTEEILKIG-------CDKVTSETELSSEDAV  268 (310)
Q Consensus       223 -~p~ivv~NK~Dl~~~---~~----~~~~l~~~l~~~g-------~~~~sa~~~~gi~~l~  268 (310)
                       .|+++|+||+|+.+.   ++    ..+++.+.+..++       +.++||+++.|+.+++
T Consensus       144 ~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          144 LDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             CTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             CCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence             468999999999862   22    2345555555555       4458999999987543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.59  E-value=2.1e-15  Score=145.03  Aligned_cols=145  Identities=18%  Similarity=0.150  Sum_probs=92.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC-----------------CC--------------CCCceeeccceEeeCCCCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI-----------------AD--------------YPFTTLMPNLGRLDGDPTL  150 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-----------------~~--------------~~~tT~~~~~~~v~~~~~~  150 (310)
                      ..+|+++|.+|+|||||+++|++....+                 +.              ..++|.+.....+....  
T Consensus         7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~--   84 (458)
T 1f60_A            7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--   84 (458)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC--
Confidence            3679999999999999999998641111                 00              13445544444443321  


Q ss_pred             CCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcH-------HHHHHHHHHHHhcCCCCCCC
Q 021615          151 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV-------NDYRTVKEELRMYNPDYLER  223 (310)
Q Consensus       151 ~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~-------~~~~~~~~~l~~~~~~~~~~  223 (310)
                            ..+.+|||||+.++       .......+..+|++++|+|+++....       +..+.+ ..+..     .+.
T Consensus        85 ------~~~~iiDtPGh~~f-------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~-~~~~~-----~~v  145 (458)
T 1f60_A           85 ------YQVTVIDAPGHRDF-------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT-----LGV  145 (458)
T ss_dssp             ------EEEEEEECCCCTTH-------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH-----TTC
T ss_pred             ------ceEEEEECCCcHHH-------HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHH-HHHHH-----cCC
Confidence                  27999999998643       44566778899999999999864221       222222 22332     356


Q ss_pred             C-EEEEEeCCCCCC-cHhHH----HHHHHHHHhcC-------CCccccCccCCHHHH
Q 021615          224 P-FIVVLNKIDLPE-ARDRL----QSLTEEILKIG-------CDKVTSETELSSEDA  267 (310)
Q Consensus       224 p-~ivv~NK~Dl~~-~~~~~----~~l~~~l~~~g-------~~~~sa~~~~gi~~l  267 (310)
                      | +++|+||+|+.+ ..+..    +++.+.+..++       +.++||+++.|+.++
T Consensus       146 ~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          146 RQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             CEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            5 899999999974 22222    33444444444       445899999998643

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.57  E-value=9.9e-15  Score=143.16  Aligned_cols=133  Identities=21%  Similarity=0.320  Sum_probs=85.6

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCC---CCCCCCceeeccceEeeCCC-------C------CCCcc---------
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPD---IADYPFTTLMPNLGRLDGDP-------T------LGAEK---------  154 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~---i~~~~~tT~~~~~~~v~~~~-------~------~~~~~---------  154 (310)
                      ...++|+|+|.+|||||||+|+|++.+..   +++.|.||...  +......       .      .....         
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~--~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV--AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE--EEECCSSSEEECCC------------------CCC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE--EEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            45689999999999999999999998863   56677665421  1111000       0      00000         


Q ss_pred             -------CC----CceEEEeCCCCCcccc--CCch--HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCC
Q 021615          155 -------YS----SEATLADLPGLIEGAH--LGKG--LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD  219 (310)
Q Consensus       155 -------~~----~~~~i~DtPG~~~~~~--~~~~--l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~  219 (310)
                             +.    ..+++|||||+.+...  ....  +.......+..+|++++|+|+++.........+.+.+..    
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----  216 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----  216 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----
Confidence                   00    2689999999976321  1121  334445667899999999999875444444555555543    


Q ss_pred             CCCCCEEEEEeCCCCCCcHh
Q 021615          220 YLERPFIVVLNKIDLPEARD  239 (310)
Q Consensus       220 ~~~~p~ivv~NK~Dl~~~~~  239 (310)
                       .+.|+++|+||+|+....+
T Consensus       217 -~~~pvilVlNK~Dl~~~~e  235 (550)
T 2qpt_A          217 -HEDKIRVVLNKADMVETQQ  235 (550)
T ss_dssp             -CGGGEEEEEECGGGSCHHH
T ss_pred             -cCCCEEEEEECCCccCHHH
Confidence             3579999999999987543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.57  E-value=1.5e-15  Score=146.32  Aligned_cols=148  Identities=22%  Similarity=0.224  Sum_probs=84.0

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------C------CCCCceeeccceEeeCCC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------A------DYPFTTLMPNLGRLDGDP  148 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------~------~~~~tT~~~~~~~v~~~~  148 (310)
                      +...+|+++|.+|+|||||+++|+.....+                         .      ...++|+......+... 
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~-  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE-  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence            455789999999999999999997522111                         0      01234444333333322 


Q ss_pred             CCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCc-------HHHHHHHHHHHHhcCCCCC
Q 021615          149 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-------VNDYRTVKEELRMYNPDYL  221 (310)
Q Consensus       149 ~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~-------~~~~~~~~~~l~~~~~~~~  221 (310)
                             +..+.+|||||+.++.       ..+...+..+|++++|+|+++...       .+..+.+ ..+..     .
T Consensus       120 -------~~~~~iiDtPGh~~f~-------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l-~~~~~-----~  179 (467)
T 1r5b_A          120 -------HRRFSLLDAPGHKGYV-------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART-----Q  179 (467)
T ss_dssp             -------SEEEEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH-----T
T ss_pred             -------CeEEEEEECCCcHHHH-------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHH-HHHHH-----c
Confidence                   1378999999997653       244566788999999999987521       1122222 22222     3


Q ss_pred             CCC-EEEEEeCCCCCCc---HhH----HHHHHHHHHhc-C--------CCccccCccCCHHHHH
Q 021615          222 ERP-FIVVLNKIDLPEA---RDR----LQSLTEEILKI-G--------CDKVTSETELSSEDAV  268 (310)
Q Consensus       222 ~~p-~ivv~NK~Dl~~~---~~~----~~~l~~~l~~~-g--------~~~~sa~~~~gi~~l~  268 (310)
                      +.| +++|+||+|+...   .+.    .+++.+.+... +        +.++|++++.|+.+++
T Consensus       180 ~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          180 GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             TCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            677 9999999999642   222    23344444444 3        4458999999988755

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.57  E-value=4.5e-15  Score=138.48  Aligned_cols=160  Identities=14%  Similarity=0.131  Sum_probs=73.6

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCC-------CceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc---
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA---  171 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~-------~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~---  171 (310)
                      .++|+|+|.+|+|||||+|+|++.......+.       ..|.......+...  ..+  ....+.+|||||+.+..   
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~--~~~--~~~~l~i~DTpG~gd~~~~~  112 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIE--ERG--VKLRLTVVDTPGYGDAINCR  112 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC------C--EEEEEEEEC-----------
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEee--cCC--cccceEEEEeccccccCccH
Confidence            36799999999999999999988754332221       12222111111111  011  11268999999995432   


Q ss_pred             ----cCCchHHHHHHHHhhh-------------cCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615          172 ----HLGKGLGRNFLRHLRR-------------TRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKID  233 (310)
Q Consensus       172 ----~~~~~l~~~~~~~l~~-------------~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~D  233 (310)
                          .....+...|..++..             +|+++|+++.+.. ++.... .+.+.+.      .+.|+|+|+||+|
T Consensus       113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~-~l~~~d~~~~~~l~------~~~piIlV~NK~D  185 (361)
T 2qag_A          113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAIH------NKVNIVPVIAKAD  185 (361)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSS-SCCHHHHHHHHHTC------S-SCEEEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCC-CcchhHHHHHHHhc------cCCCEEEEEECCC
Confidence                1112233333344433             2467888776322 222222 2333332      3689999999999


Q ss_pred             CCCcHhHH---HHHHHHHHhc--CCCccccCccCCHHHHHHHHhh
Q 021615          234 LPEARDRL---QSLTEEILKI--GCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       234 l~~~~~~~---~~l~~~l~~~--g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      +....+..   +.+.+.+...  .+..+|++++.+ .+.|..+..
T Consensus       186 l~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~  229 (361)
T 2qag_A          186 TLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTR  229 (361)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHH
Confidence            98764422   2333333333  455689999888 666655444

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.56  E-value=2.8e-14  Score=147.86  Aligned_cols=155  Identities=19%  Similarity=0.152  Sum_probs=100.1

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCC---C--C-----C------CCCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAK---P--D-----I------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  163 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~---~--~-----i------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D  163 (310)
                      +...+|+++|.+|+|||||+++|++..   .  .     .      ....+.|.......+...        ...+.+||
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~--------~~kI~IID  365 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP--------TRHYAHVD  365 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS--------SCEEEEEE
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC--------CEEEEEEE
Confidence            345789999999999999999998741   0  0     0      112333443332223222        13799999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHH-
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL-  241 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~-  241 (310)
                      |||+.++       .......+..+|++|+|+|+++....+..+.+ ..+..     .+.| +++|+||+|+.+..+.. 
T Consensus       366 TPGHedF-------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL-~ll~~-----lgIP~IIVVINKiDLv~d~e~le  432 (1289)
T 3avx_A          366 CPGHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLGRQ-----VGVPYIIVFLNKCDMVDDEELLE  432 (1289)
T ss_dssp             CCCHHHH-------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHH-HHHHH-----HTCSCEEEEEECCTTCCCHHHHH
T ss_pred             CCChHHH-------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHH-HHHHH-----cCCCeEEEEEeecccccchhhHH
Confidence            9999654       34455667889999999999986554444433 44444     2678 78999999998643322 


Q ss_pred             ---HHHHHHHHhcC-------CCccccCcc--------CCHHHHHHHHhhcc
Q 021615          242 ---QSLTEEILKIG-------CDKVTSETE--------LSSEDAVKSLSTEG  275 (310)
Q Consensus       242 ---~~l~~~l~~~g-------~~~~sa~~~--------~gi~~l~~~l~~~~  275 (310)
                         +++.+.+...+       +.++|++++        .|+.++++.+....
T Consensus       433 ~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          433 LVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             HHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence               34455555554       345899998        46888888876644

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.55  E-value=3.8e-14  Score=142.58  Aligned_cols=117  Identities=18%  Similarity=0.167  Sum_probs=80.1

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCC------C------CC------CCCceeeccceEeeCCCCCCCccCCCceEE
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPD------I------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL  161 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~------i------~~------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i  161 (310)
                      ....+|+|+|.+|+|||||+++|+.....      +      .+      ..++|+......+.+..        ..+++
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--------~~i~l   81 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--------HRINI   81 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--------EEEEE
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--------eEEEE
Confidence            44678999999999999999999832110      1      11      22344444444443321        27999


Q ss_pred             EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      |||||+.++       ...+.+++..+|++++|+|+++....+....|. .+..     .+.|+++|+||+|+...
T Consensus        82 iDTPG~~df-------~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~-----~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           82 IDTPGHVDF-------TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK-----YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             ECCCSSTTC-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH-----TTCCEEEEEECTTSTTC
T ss_pred             EECcCccch-------HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH-----cCCCEEEEEECCCcccC
Confidence            999999765       234567778999999999999988777765554 4444     37899999999999764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.55  E-value=7.4e-15  Score=147.75  Aligned_cols=169  Identities=19%  Similarity=0.211  Sum_probs=102.4

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC------------------------------
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT------------------------------  149 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~------------------------------  149 (310)
                      ..+++|+|+|.+|+|||||+|+|++..........+|..|..-.+...+.                              
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            45789999999999999999999998743222223443332111100000                              


Q ss_pred             ------CCCc--------cCCCceEEEeCCCCCcccc--CCc----hHHHHHHHHh-hhcCEEEEecccCCCCcHHHHHH
Q 021615          150 ------LGAE--------KYSSEATLADLPGLIEGAH--LGK----GLGRNFLRHL-RRTRLLVHVIDAAAENPVNDYRT  208 (310)
Q Consensus       150 ------~~~~--------~~~~~~~i~DtPG~~~~~~--~~~----~l~~~~~~~l-~~~d~il~VvD~s~~~~~~~~~~  208 (310)
                            +...        .....++++||||+.....  +..    .+......++ ..+|++++|+|++.....++...
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                  0000        0012588999999987431  111    2333333344 57899999999987554444434


Q ss_pred             HHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHH-HHHh--c---CCCccccCccCCHHHHHHHHhh
Q 021615          209 VKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE-EILK--I---GCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       209 ~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~-~l~~--~---g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      +...+..     .++|+++|+||+|+.+.......+.. .+..  .   .+..+||+++.|++++++.+..
T Consensus       209 ll~~L~~-----~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          209 IAKEVDP-----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             HHHHHCT-----TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             HHHHHHh-----cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            5555543     47899999999999865332222221 0100  1   2445899999999998887765

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.53  E-value=2.3e-14  Score=134.67  Aligned_cols=100  Identities=33%  Similarity=0.534  Sum_probs=81.9

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCC---------CCCccCCCceEEEeCCCCCc
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPT---------LGAEKYSSEATLADLPGLIE  169 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~---------~~~~~~~~~~~i~DtPG~~~  169 (310)
                      +...+|+|+|+||||||||+|+|++... .++++||||+.|+.+.+.....         .+.......+.++||||+..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            4456899999999999999999999887 6699999999999998865420         00000012479999999999


Q ss_pred             cccCCchHHHHHHHHhhhcCEEEEecccCC
Q 021615          170 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAA  199 (310)
Q Consensus       170 ~~~~~~~l~~~~~~~l~~~d~il~VvD~s~  199 (310)
                      +++..++++..|+.+++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            888888898899999999999999999875

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.52  E-value=3.7e-14  Score=142.68  Aligned_cols=116  Identities=22%  Similarity=0.179  Sum_probs=80.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCC------------CCC------CCCceeeccceEeeCCCCCCCccCCCceEEE
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPD------------IAD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLA  162 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~------------i~~------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~  162 (310)
                      ...+|+|+|.+|+|||||+|+|+.....            ..+      .+++|+......+.+..        ..+++|
T Consensus         9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--------~~i~li   80 (693)
T 2xex_A            9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--------HRVNII   80 (693)
T ss_dssp             TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--------EEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--------eeEEEE
Confidence            4568999999999999999999842111            111      23445544444444322        279999


Q ss_pred             eCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       163 DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      ||||+.++..       .+.++++.+|++++|+|+++....++...| ..+..     .+.|+++|+||+|+...
T Consensus        81 DTPG~~df~~-------~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~-----~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           81 DTPGHVDFTV-------EVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT-----YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CCCCCSSCCH-------HHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH-----TTCCEEEEEECTTSTTC
T ss_pred             ECcCCcchHH-------HHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH-----cCCCEEEEEECCCcccc
Confidence            9999987532       445677889999999999987777665554 44554     37899999999999865

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.50  E-value=1.9e-13  Score=133.92  Aligned_cols=122  Identities=20%  Similarity=0.201  Sum_probs=87.4

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCCC----------------CC------CCCCCceeeccceEeeCCCCCCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAKP----------------DI------ADYPFTTLMPNLGRLDGDPTLGA  152 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~~----------------~i------~~~~~tT~~~~~~~v~~~~~~~~  152 (310)
                      +..+.....+|+|+|...+|||||..+|+-...                .+      ...-+.|+......+.+..    
T Consensus        24 ~~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~----   99 (548)
T 3vqt_A           24 LEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD----   99 (548)
T ss_dssp             HHHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT----
T ss_pred             hhhcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC----
Confidence            444677889999999999999999999962211                11      1122345544444454432    


Q ss_pred             ccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 021615          153 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI  232 (310)
Q Consensus       153 ~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~  232 (310)
                          ..++|+||||+.++..       ...+.++-+|++|+|||+..+...+....| +.+..     .+.|.++++||+
T Consensus       100 ----~~iNlIDTPGHvDF~~-------Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~-----~~lp~i~fINK~  162 (548)
T 3vqt_A          100 ----RVVNLLDTPGHQDFSE-------DTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM-----RATPVMTFVNKM  162 (548)
T ss_dssp             ----EEEEEECCCCGGGCSH-------HHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH-----TTCCEEEEEECT
T ss_pred             ----EEEEEEeCCCcHHHHH-------HHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH-----hCCceEEEEecc
Confidence                2799999999998854       556778899999999999998877775555 55555     379999999999


Q ss_pred             CCCCc
Q 021615          233 DLPEA  237 (310)
Q Consensus       233 Dl~~~  237 (310)
                      |+..+
T Consensus       163 Dr~~a  167 (548)
T 3vqt_A          163 DREAL  167 (548)
T ss_dssp             TSCCC
T ss_pred             cchhc
Confidence            99865

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.50  E-value=2.4e-14  Score=132.99  Aligned_cols=98  Identities=9%  Similarity=0.080  Sum_probs=59.1

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .+.++||||+....          ....+.+|++++|+|++.+...+.   +...       ..+.|.++|+||+|+.+.
T Consensus       168 ~~iliDT~Gi~~~~----------~~l~~~~d~vl~V~d~~~~~~~~~---i~~~-------il~~~~ivVlNK~Dl~~~  227 (349)
T 2www_A          168 DIILIETVGVGQSE----------FAVADMVDMFVLLLPPAGGDELQG---IKRG-------IIEMADLVAVTKSDGDLI  227 (349)
T ss_dssp             SEEEEECCCC--CH----------HHHHTTCSEEEEEECCC----------------------CCSCSEEEECCCSGGGH
T ss_pred             CEEEEECCCcchhh----------hhHHhhCCEEEEEEcCCcchhHHH---hHHH-------HHhcCCEEEEeeecCCCc
Confidence            68999999975321          123468999999999986532221   1111       135688999999999753


Q ss_pred             Hh---HHHHHHHHHHh---------cCCCccccCccCCHHHHHHHHhhcc
Q 021615          238 RD---RLQSLTEEILK---------IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       238 ~~---~~~~l~~~l~~---------~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ..   ....+...+..         ..+..+|++++.|++++++.+....
T Consensus       228 ~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          228 VPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence            22   12233332221         1123489999999999999887654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.49  E-value=2.4e-13  Score=136.30  Aligned_cols=116  Identities=23%  Similarity=0.182  Sum_probs=79.0

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCC---C---------C------CCCceeeccceEeeCCCCCCCccCCCceE
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI---A---------D------YPFTTLMPNLGRLDGDPTLGAEKYSSEAT  160 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i---~---------~------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~  160 (310)
                      .....+|+++|.+|+|||||+++|++....+   +         +      ..+.|.......+...        ...++
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--------~~~~n   77 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--------GHRVF   77 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--------TEEEE
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--------CEEEE
Confidence            3456689999999999999999999543211   0         0      0122332222223222        12789


Q ss_pred             EEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          161 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       161 i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      +|||||+.++       .....+.++.+|++++|+|+.+....+.. .++..+..     .+.|+++|+||+|+.
T Consensus        78 liDTpG~~~f-------~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~-----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           78 LLDAPGYGDF-------VGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER-----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             EEECCCSGGG-------HHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH-----TTCCEEEEEECGGGC
T ss_pred             EEeCCCccch-------HHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH-----ccCCEEEEecCCchh
Confidence            9999999765       23456777899999999998876655544 44455554     368999999999987

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.48  E-value=1.1e-13  Score=128.78  Aligned_cols=98  Identities=14%  Similarity=0.101  Sum_probs=65.6

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .+.|+||||+.+.          ....+..+|++++|+|++..+..+.+          .....+.|.++|+||+|+...
T Consensus       173 ~~iiiDTpGi~~~----------~~~~~~~aD~vl~V~d~~~~~~~~~l----------~~~~~~~p~ivVlNK~Dl~~~  232 (355)
T 3p32_A          173 DVILIETVGVGQS----------EVAVANMVDTFVLLTLARTGDQLQGI----------KKGVLELADIVVVNKADGEHH  232 (355)
T ss_dssp             CEEEEEECSCSSH----------HHHHHTTCSEEEEEEESSTTCTTTTC----------CTTSGGGCSEEEEECCCGGGH
T ss_pred             CEEEEeCCCCCcH----------HHHHHHhCCEEEEEECCCCCccHHHH----------HHhHhhcCCEEEEECCCCcCh
Confidence            7999999997542          12334789999999998765433211          112235799999999999754


Q ss_pred             Hh---HHHHHHHHHHh---------cCCCccccCccCCHHHHHHHHhhcc
Q 021615          238 RD---RLQSLTEEILK---------IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       238 ~~---~~~~l~~~l~~---------~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ..   ....+.+.+..         ..+..+||+++.|++++++.+....
T Consensus       233 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~  282 (355)
T 3p32_A          233 KEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR  282 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence            22   12233333322         2245589999999999999886654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.47  E-value=3.8e-13  Score=135.49  Aligned_cols=123  Identities=19%  Similarity=0.087  Sum_probs=81.2

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC------------CC------CCCceeeccceEeeCCCC-CCCccCCCceE
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI------------AD------YPFTTLMPNLGRLDGDPT-LGAEKYSSEAT  160 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i------------~~------~~~tT~~~~~~~v~~~~~-~~~~~~~~~~~  160 (310)
                      ...++|+|+|.+|+|||||+++|+.....+            .+      ..+.|.......+.+... ....  ...++
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~--~~~i~   85 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYE--PHRIN   85 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCC--ceeEE
Confidence            446789999999999999999997532111            01      123344333333332210 0011  13799


Q ss_pred             EEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          161 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       161 i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      ||||||+.++.       ....+.++.||++|+|+|+++....+....| ..+..     .+.|+++|+||+|+...
T Consensus        86 liDTPG~~df~-------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~-----~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           86 IIDTPGHVDFT-------IEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK-----YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EEeCCCccchH-------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH-----cCCCEEEEEeCCCcccc
Confidence            99999997752       2445667889999999999987666554444 44443     36899999999999865

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.44  E-value=1.2e-13  Score=141.72  Aligned_cols=121  Identities=22%  Similarity=0.188  Sum_probs=80.9

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CC---------------CCCceeeccceEeeCCC----------CCCCc
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-AD---------------YPFTTLMPNLGRLDGDP----------TLGAE  153 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~---------------~~~tT~~~~~~~v~~~~----------~~~~~  153 (310)
                      ....+|+|+|.+|+|||||+++|+.....+ ..               ..+.|+......+.+..          .....
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            345789999999999999999998652211 10               12223332222222210          00111


Q ss_pred             cCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615          154 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  233 (310)
Q Consensus       154 ~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D  233 (310)
                        ...+++|||||+.++..       .+.++++.+|++|+|+|+.++...+....|.... .     .+.|+++|+||+|
T Consensus        97 --~~~i~liDTPG~~df~~-------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~-----~~~p~ilviNK~D  161 (842)
T 1n0u_A           97 --SFLINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G-----ERIKPVVVINKVD  161 (842)
T ss_dssp             --EEEEEEECCCCCCSSCH-------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H-----TTCEEEEEEECHH
T ss_pred             --CceEEEEECcCchhhHH-------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H-----cCCCeEEEEECCC
Confidence              12789999999988643       4456678999999999999988777766555433 3     3689999999999


Q ss_pred             CC
Q 021615          234 LP  235 (310)
Q Consensus       234 l~  235 (310)
                      +.
T Consensus       162 ~~  163 (842)
T 1n0u_A          162 RA  163 (842)
T ss_dssp             HH
T ss_pred             cc
Confidence            86

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.43  E-value=4e-13  Score=134.04  Aligned_cols=115  Identities=20%  Similarity=0.271  Sum_probs=80.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCC------C------CCCC------CceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPD------I------ADYP------FTTLMPNLGRLDGDPTLGAEKYSSEATLAD  163 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~------i------~~~~------~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D  163 (310)
                      +.+|+|+|...+|||||..+|+.....      +      .++.      +.|+......+.+.        +..++++|
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~--------~~~iNlID   73 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE--------NTKVNIID   73 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS--------SCBCCCEE
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC--------CEEEEEEE
Confidence            567999999999999999999632111      1      1110      12332222222222        13799999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      |||+.++..       ...+.++-||++|+|||+..+...+....| +.+..+     +.|.++++||+|+...
T Consensus        74 TPGH~DF~~-------Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~-----~lp~i~~INKmDr~~a  134 (638)
T 3j25_A           74 TPGHMDFLA-------EVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM-----GIPTIFFINKIDQNGI  134 (638)
T ss_dssp             CCCSSSTHH-------HHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH-----TCSCEECCEECCSSSC
T ss_pred             CCCcHHHHH-------HHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc-----CCCeEEEEeccccccC
Confidence            999988743       566788899999999999998777665444 455553     7899999999998754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.41  E-value=1.5e-13  Score=127.09  Aligned_cols=98  Identities=9%  Similarity=0.105  Sum_probs=61.7

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .+.++||||+.+...          .....+|++++|+|++..+..+.+.   ...       .+.|.++|+||+|+.+.
T Consensus       150 ~i~liDTpG~~~~~~----------~~~~~aD~vl~Vvd~~~~~~~~~l~---~~~-------~~~p~ivv~NK~Dl~~~  209 (341)
T 2p67_A          150 DVVIVETVGVGQSET----------EVARMVDCFISLQIAGGGDDLQGIK---KGL-------MEVADLIVINKDDGDNH  209 (341)
T ss_dssp             SEEEEEEECCTTHHH----------HHHTTCSEEEEEECC------CCCC---HHH-------HHHCSEEEECCCCTTCH
T ss_pred             CEEEEeCCCccchHH----------HHHHhCCEEEEEEeCCccHHHHHHH---Hhh-------hcccCEEEEECCCCCCh
Confidence            799999999865311          1246899999999997543221111   111       14688999999999864


Q ss_pred             HhH---HHHHHHHHHhcC---------CCccccCccCCHHHHHHHHhhcc
Q 021615          238 RDR---LQSLTEEILKIG---------CDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       238 ~~~---~~~l~~~l~~~g---------~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .+.   .+.+.+.+..++         +..+|++++.|++++++.+....
T Consensus       210 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~  259 (341)
T 2p67_A          210 TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  259 (341)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence            321   123443333322         23589999999999999887644

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.38  E-value=3.6e-12  Score=120.73  Aligned_cols=162  Identities=17%  Similarity=0.164  Sum_probs=72.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccc--eEeeCCCCCCCccCCCceEEEeCCCCCccccCC---c
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNL--GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG---K  175 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~--~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~---~  175 (310)
                      ++|+|+|++|||||||+|+|++.......+...+.  .+..  ..+.....  .......+++|||||+.......   .
T Consensus        32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q--~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK--EGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--------CEEEEEEECC-----------CH
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe--cCCcccceeeeechhhhhhccchhhHH
Confidence            46899999999999999999987642211111100  0111  11111110  01111268999999997542110   1


Q ss_pred             hH----HHHHHHHh-------------hhcCEEEEecccC-CCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          176 GL----GRNFLRHL-------------RRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       176 ~l----~~~~~~~l-------------~~~d~il~VvD~s-~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .+    ...+..++             .++++++|+++.+ ......+. .|...|.      .+.|+|+|+||+|+...
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L~------~~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRLH------EKVNIIPLIAKADTLTP  182 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHHT------TTSEEEEEEESTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHHh------ccCcEEEEEEcccCccH
Confidence            11    11121111             2345677777765 23323332 3445554      26899999999999875


Q ss_pred             HhHH---HHHHHHHHh--cCCCccccCccCCHHHHHHHHhh
Q 021615          238 RDRL---QSLTEEILK--IGCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       238 ~~~~---~~l~~~l~~--~g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      .+..   +.+.+.+..  +.+..+|++++.+++++|..+..
T Consensus       183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~  223 (418)
T 2qag_C          183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD  223 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence            4322   344444444  45666899999999987776654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.37  E-value=1.8e-12  Score=117.82  Aligned_cols=160  Identities=15%  Similarity=0.114  Sum_probs=74.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCC------ceee-ccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPF------TTLM-PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-  172 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~------tT~~-~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-  172 (310)
                      .++|+|+|++|||||||+++|++..... ...+.      .|.. ...+.+...     ......+++|||||+..... 
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~-----~~~~~~ltv~Dt~g~~~~~~~   92 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEE-----RGVKLRLTVVDTPGYGDAINC   92 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC--------CCEEEEEEEEC--------
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecC-----CCcccCcchhhhhhhhhhcCc
Confidence            3578999999999999999998863221 11110      1111 111111100     01123689999999943210 


Q ss_pred             --CCchHHH-------HHHHHhh----------hcCEEEEecccCC--CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 021615          173 --LGKGLGR-------NFLRHLR----------RTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNK  231 (310)
Q Consensus       173 --~~~~l~~-------~~~~~l~----------~~d~il~VvD~s~--~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK  231 (310)
                        .-..+..       .+.+.+.          ++++++|+++.+.  .++.. .    +.+....   ...|+++|+||
T Consensus        93 ~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~-~----~~l~~l~---~~~~iilV~~K  164 (301)
T 2qnr_A           93 RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-V----AFMKAIH---NKVNIVPVIAK  164 (301)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH-H----HHHHHHT---TTSCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH-H----HHHHHHH---hcCCEEEEEEe
Confidence              0012222       2222221          2345777776543  33322 2    2233322   25789999999


Q ss_pred             CCCCCcHhH---HHHHHHHHHhc--CCCccccCccCCHHHHHHHHhhcc
Q 021615          232 IDLPEARDR---LQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       232 ~Dl~~~~~~---~~~l~~~l~~~--g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +|+....+.   .+.+.+.+...  .+.++|++++ +++++|..++...
T Consensus       165 ~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i  212 (301)
T 2qnr_A          165 ADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL  212 (301)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence            999865432   23444445544  4566899999 9999998877654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.37  E-value=1.8e-12  Score=114.67  Aligned_cols=110  Identities=22%  Similarity=0.221  Sum_probs=69.7

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHH----HHHHhcCCCCCCCCEEEEEeCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVK----EELRMYNPDYLERPFIVVLNKID  233 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~----~~l~~~~~~~~~~p~ivv~NK~D  233 (310)
                      .+.+|||||+.+.... ..+...+..++.. +++++|+|++......++....    .....     .+.|+++|+||+|
T Consensus       110 d~iiiDtpG~~~~~~~-~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~~iv~NK~D  182 (262)
T 1yrb_A          110 DYVLIDTPGQMETFLF-HEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR-----LGATTIPALNKVD  182 (262)
T ss_dssp             SEEEEECCSSHHHHHH-SHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH-----HTSCEEEEECCGG
T ss_pred             CEEEEeCCCccchhhh-hhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc-----cCCCeEEEEeccc
Confidence            7899999999765322 1234445556666 8999999987644433332221    11111     2689999999999


Q ss_pred             CCCcHhHHHHHHH----------H------------------HHh----cCCCccccCccCCHHHHHHHHhhcc
Q 021615          234 LPEARDRLQSLTE----------E------------------ILK----IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       234 l~~~~~~~~~l~~----------~------------------l~~----~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +....+ .+.+.+          .                  +..    ..+..+|++++.|+++++..+....
T Consensus       183 ~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~  255 (262)
T 1yrb_A          183 LLSEEE-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  255 (262)
T ss_dssp             GCCHHH-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccccc-HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence            986532 111111          1                  122    2456699999999999999986543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.36  E-value=4.6e-14  Score=132.02  Aligned_cols=120  Identities=24%  Similarity=0.211  Sum_probs=83.0

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC------CCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA------KPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG  174 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~------~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~  174 (310)
                      ...+|+++|.||+|||||+|+|++.      ...++++|+||.......+.           ..+.++||||+.+.....
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~liDtPG~~~~~~~~  229 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-----------SGATLYDTPGIINHHQMA  229 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-----------TTCEEEECCSCCCCSSGG
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-----------CCeEEEeCCCcCcHHHHH
Confidence            3468999999999999999999987      34458899999876654432           258999999998764333


Q ss_pred             chHHHHHHHHh---hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          175 KGLGRNFLRHL---RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       175 ~~l~~~~~~~l---~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      ..+....+.++   .+.+.++|++|+........+..    +.....  .+.|+++++||+|....
T Consensus       230 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~--~~~~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          230 HFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKG--GRRSFVCYMANELTVHR  289 (369)
T ss_dssp             GGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEES--SSEEEEEEECTTSCEEE
T ss_pred             HHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE----EEEccC--CCceEEEEecCCccccc
Confidence            44444555665   77899999999843211111110    111111  35799999999998754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.33  E-value=8.9e-13  Score=113.60  Aligned_cols=157  Identities=13%  Similarity=0.082  Sum_probs=91.3

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCC-----CC-CCCCCCceeecc------ceEeeCCC--CCCC----------ccC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAK-----PD-IADYPFTTLMPN------LGRLDGDP--TLGA----------EKY  155 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~-----~~-i~~~~~tT~~~~------~~~v~~~~--~~~~----------~~~  155 (310)
                      ...++|+++|++|||||||+++|++..     .. +...++++.+..      ...+..+.  ....          ...
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS  107 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence            456789999999999999999998652     11 122223322110      00111110  0000          011


Q ss_pred             CCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      ...+.+|||+|+......       +  . ..++.+++|+|+......  .   +.....     .+.|.++|+||+|+.
T Consensus       108 ~~d~iiidt~G~~~~~~~-------~--~-~~~~~~i~vvd~~~~~~~--~---~~~~~~-----~~~~~iiv~NK~Dl~  167 (221)
T 2wsm_A          108 DCDLLLIENVGNLICPVD-------F--D-LGENYRVVMVSVTEGDDV--V---EKHPEI-----FRVADLIVINKVALA  167 (221)
T ss_dssp             TCSEEEEEEEEBSSGGGG-------C--C-CSCSEEEEEEEGGGCTTH--H---HHCHHH-----HHTCSEEEEECGGGH
T ss_pred             CCCEEEEeCCCCCCCCch-------h--c-cccCcEEEEEeCCCcchh--h---hhhhhh-----hhcCCEEEEecccCC
Confidence            237899999996322110       0  0 146789999999875421  1   111111     247899999999986


Q ss_pred             CcH-hHHHHHHHHHHhc----CCCccccCccCCHHHHHHHHhhccC
Q 021615          236 EAR-DRLQSLTEEILKI----GCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       236 ~~~-~~~~~l~~~l~~~----g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      +.. ...+.+.+.+...    .+..+|++++.|+.+++..+.....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~  213 (221)
T 2wsm_A          168 EAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN  213 (221)
T ss_dssp             HHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             cchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence            431 1234444444432    3456899999999999999876553

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.31  E-value=4.3e-12  Score=117.16  Aligned_cols=98  Identities=10%  Similarity=0.145  Sum_probs=58.6

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .+.++||||+.+..          ....+.+|++++|+|++..+..+.   +...+       .+.+.++++||+|+...
T Consensus       149 ~~iliDT~Gi~~~~----------~~v~~~~d~vl~v~d~~~~~~~~~---i~~~i-------~~~~~ivvlNK~Dl~~~  208 (337)
T 2qm8_A          149 DVILVETVGVGQSE----------TAVADLTDFFLVLMLPGAGDELQG---IKKGI-------FELADMIAVNKADDGDG  208 (337)
T ss_dssp             CEEEEEECSSSSCH----------HHHHTTSSEEEEEECSCC---------CCTTH-------HHHCSEEEEECCSTTCC
T ss_pred             CEEEEECCCCCcch----------hhHHhhCCEEEEEEcCCCcccHHH---HHHHH-------hccccEEEEEchhccCc
Confidence            79999999986531          122368999999999864332111   10011       13466888899997653


Q ss_pred             HhHH----HHHHHHHHhc---------CCCccccCccCCHHHHHHHHhhcc
Q 021615          238 RDRL----QSLTEEILKI---------GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       238 ~~~~----~~l~~~l~~~---------g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .+..    ..+...+..+         .+..+|+.++.|++++++.+....
T Consensus       209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~  259 (337)
T 2qm8_A          209 ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  259 (337)
T ss_dssp             HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3222    2222222111         223489999999999998886543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.30  E-value=2.9e-13  Score=126.47  Aligned_cols=122  Identities=21%  Similarity=0.218  Sum_probs=78.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCC-------CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAK-------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL  173 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~-------~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~  173 (310)
                      ...+|+++|.+|+|||||+|+|++..       ..++++|+||.......+.           ..+.++||||+.+....
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~liDtPG~~~~~~~  227 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-----------EESSLYDTPGIINHHQM  227 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-----------SSCEEEECCCBCCTTSG
T ss_pred             ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-----------CCeEEEeCCCcCcHHHH
Confidence            34689999999999999999999862       2347899999876554432           15799999999876433


Q ss_pred             CchHHHHHHHH---hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh
Q 021615          174 GKGLGRNFLRH---LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD  239 (310)
Q Consensus       174 ~~~l~~~~~~~---l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~  239 (310)
                      ...+....+.+   ....+.++|++|.........+.. .+.+..     .+.|+++++||+|.....+
T Consensus       228 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~~-----~~~~~~~v~nk~d~~~~~~  290 (368)
T 3h2y_A          228 AHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVSG-----GRRAFTCHFSNRLTIHRTK  290 (368)
T ss_dssp             GGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEES-----SSEEEEEEECTTSCEEEEE
T ss_pred             HHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-EEEecC-----CCceEEEEecCcccccccc
Confidence            34444455554   356788999999843211111110 011111     3679999999999986533

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.29  E-value=2.3e-11  Score=122.74  Aligned_cols=135  Identities=16%  Similarity=0.142  Sum_probs=86.5

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCC------CCC------C------CCCCceeeccceEeeCCCC-CCCccCCCce
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAK------PDI------A------DYPFTTLMPNLGRLDGDPT-LGAEKYSSEA  159 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~------~~i------~------~~~~tT~~~~~~~v~~~~~-~~~~~~~~~~  159 (310)
                      +..+.+|+|+|...+|||||..+|+...      ..+      .      ..-+.|+......+.+... .....  ..+
T Consensus        10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~--~~i   87 (709)
T 4fn5_A           10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDN--YRV   87 (709)
T ss_dssp             GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCC--EEE
T ss_pred             hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCC--EEE
Confidence            4567789999999999999999986221      111      1      1122333333333332211 01111  279


Q ss_pred             EEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-
Q 021615          160 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-  238 (310)
Q Consensus       160 ~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-  238 (310)
                      +++||||+.++..       ...+.++-||++|+|||+..+...+....|...+..      +.|.++++||+|+...+ 
T Consensus        88 NlIDTPGHvDF~~-------Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~------~lp~i~~iNKiDr~~a~~  154 (709)
T 4fn5_A           88 NVIDTPGHVDFTI-------EVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY------GVPRIVYVNKMDRQGANF  154 (709)
T ss_dssp             EEECCCSCTTCHH-------HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH------TCCEEEEEECSSSTTCCH
T ss_pred             EEEeCCCCcccHH-------HHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEccccccCccH
Confidence            9999999998843       566778899999999999998887776655554443      78999999999998653 


Q ss_pred             -hHHHHHHHHH
Q 021615          239 -DRLQSLTEEI  248 (310)
Q Consensus       239 -~~~~~l~~~l  248 (310)
                       ...+++.+.+
T Consensus       155 ~~~~~ei~~~l  165 (709)
T 4fn5_A          155 LRVVEQIKKRL  165 (709)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhhhhc
Confidence             2334444443

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.11  E-value=8.3e-10  Score=98.71  Aligned_cols=140  Identities=19%  Similarity=0.238  Sum_probs=76.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-C-------CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-A-------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG  174 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~-------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~  174 (310)
                      ++++|+|++|||||||+|.|++..... +       +.+.++.....+.+....     .+...++++|+||+.......
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~-----~~~~~ltv~d~~~~g~~~~~~   77 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEG-----GVKMKLTVIDTPGFGDQINNE   77 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC---------CCEEEEECCCC--CCSBCT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecC-----CCcCCceEEechhhhhhcccH
Confidence            579999999999999999999864221 1       111122112222221111     112368999999986532211


Q ss_pred             c---hHH----HHHHHHh--------------hhcCEEEEecccC-CCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 021615          175 K---GLG----RNFLRHL--------------RRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI  232 (310)
Q Consensus       175 ~---~l~----~~~~~~l--------------~~~d~il~VvD~s-~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~  232 (310)
                      .   .+.    ..+...+              .+++++++++|.. .+....+.+ +.+.|..      ..++++|+||+
T Consensus        78 ~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~-~l~~L~~------~~~vI~Vi~K~  150 (270)
T 3sop_A           78 NCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLE-FMKHLSK------VVNIIPVIAKA  150 (270)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHH-HHHHHHT------TSEEEEEETTG
T ss_pred             HHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHH-HHHHHHh------cCcEEEEEecc
Confidence            1   111    1222221              2468889999965 444444433 4455553      37999999999


Q ss_pred             CCCCcHhH---HHHHHHHHHhcCCC
Q 021615          233 DLPEARDR---LQSLTEEILKIGCD  254 (310)
Q Consensus       233 Dl~~~~~~---~~~l~~~l~~~g~~  254 (310)
                      |.....+.   ...+.+.+...++.
T Consensus       151 D~lt~~e~~~~k~~i~~~l~~~~i~  175 (270)
T 3sop_A          151 DTMTLEEKSEFKQRVRKELEVNGIE  175 (270)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCcc
Confidence            99876442   23344445555443

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.10  E-value=1.3e-10  Score=106.89  Aligned_cols=71  Identities=17%  Similarity=0.177  Sum_probs=53.3

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccC----------CCCcHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----------AENPVNDYRTVKEELRMYNPDYLERPFIV  227 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s----------~~~~~~~~~~~~~~l~~~~~~~~~~p~iv  227 (310)
                      .+.+|||+|+..       ....|..+++.++++|||+|++          +...+.+...|+..+.... ...+.|+++
T Consensus       162 ~l~iwDtaGQe~-------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~-~~~~~piiL  233 (340)
T 4fid_A          162 PFHLIDVGGQRS-------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE-FLKGAVKLI  233 (340)
T ss_dssp             EEEEEECCSCHH-------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG-GGTTSEEEE
T ss_pred             eeccccCCCccc-------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh-ccCCCeEEE
Confidence            689999999854       3445666788999999999998          4566666666666665421 224689999


Q ss_pred             EEeCCCCCC
Q 021615          228 VLNKIDLPE  236 (310)
Q Consensus       228 v~NK~Dl~~  236 (310)
                      ++||+|+..
T Consensus       234 v~NK~DL~~  242 (340)
T 4fid_A          234 FLNKMDLFE  242 (340)
T ss_dssp             EEECHHHHH
T ss_pred             EEECchhhh
Confidence            999999864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.01  E-value=2.6e-10  Score=98.33  Aligned_cols=155  Identities=15%  Similarity=0.193  Sum_probs=83.8

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC------CCCCCceee--------ccceEeeCCCC--CCC----c------
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI------ADYPFTTLM--------PNLGRLDGDPT--LGA----E------  153 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i------~~~~~tT~~--------~~~~~v~~~~~--~~~----~------  153 (310)
                      +..++|+++|.+|||||||+++|+......      ...+.++.+        .....+.....  +..    .      
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  115 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN  115 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence            356899999999999999999998653111      111111100        00011110000  000    0      


Q ss_pred             cCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 021615          154 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKI  232 (310)
Q Consensus       154 ~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~  232 (310)
                      .....+.++|++|.+....       .| .  ...+.++.|+|+.... ......    .+       .+.|.++|+||+
T Consensus       116 ~~~~d~~~id~~g~i~~~~-------s~-~--~~~~~~~~v~~~~~~~~~~~~~~----~~-------~~~~~iiv~NK~  174 (226)
T 2hf9_A          116 LDEIDLLFIENVGNLICPA-------DF-D--LGTHKRIVVISTTEGDDTIEKHP----GI-------MKTADLIVINKI  174 (226)
T ss_dssp             GGGCSEEEEECCSCSSGGG-------GC-C--CSCSEEEEEEEGGGCTTTTTTCH----HH-------HTTCSEEEEECG
T ss_pred             cCCCCEEEEeCCCCccCcc-------hh-h--hccCcEEEEEecCcchhhHhhhh----hH-------hhcCCEEEEecc
Confidence            0012688889988532210       01 0  1235567777754321 111111    11       147889999999


Q ss_pred             CCCCcH-hHHHHHHHHHHh----cCCCccccCccCCHHHHHHHHhhcc
Q 021615          233 DLPEAR-DRLQSLTEEILK----IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       233 Dl~~~~-~~~~~l~~~l~~----~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      |+.+.. ...+.+.+.+..    ..+..+|++++.|++++|..+....
T Consensus       175 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~  222 (226)
T 2hf9_A          175 DLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV  222 (226)
T ss_dssp             GGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence            986432 123444444443    3455689999999999999986543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.95  E-value=6e-10  Score=102.08  Aligned_cols=110  Identities=15%  Similarity=0.207  Sum_probs=72.9

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccC----------CCCcHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----------AENPVNDYRTVKEELRMYNPDYLERPFIV  227 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s----------~~~~~~~~~~~~~~l~~~~~~~~~~p~iv  227 (310)
                      ++.+|||+|+...       ...|..+++.+++++||+|.+          +...+.+...+++.+... +...+.|+++
T Consensus       168 ~l~iwDtgGQe~~-------R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~-~~~~~~~iiL  239 (327)
T 3ohm_A          168 IFRMVDVGGQRSE-------RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY-PWFQNSSVIL  239 (327)
T ss_dssp             EEEEEEECCSHHH-------HTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS-GGGTTCEEEE
T ss_pred             eeEEEEcCCchhH-------HHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh-hccCCceEEE
Confidence            5789999999544       234456778999999999765          445555555566665432 1224689999


Q ss_pred             EEeCCCCCCcH-----------------hHHHHH----HHHHHh--------cCCCccccCccCCHHHHHHHHhhcc
Q 021615          228 VLNKIDLPEAR-----------------DRLQSL----TEEILK--------IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       228 v~NK~Dl~~~~-----------------~~~~~l----~~~l~~--------~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ++||+|+....                 ...++.    ...+..        +.+..+||++..++..+|..+....
T Consensus       240 ~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I  316 (327)
T 3ohm_A          240 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI  316 (327)
T ss_dssp             EEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence            99999985421                 112222    222221        1234589999999999999887654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.91  E-value=1.7e-09  Score=97.29  Aligned_cols=61  Identities=26%  Similarity=0.400  Sum_probs=38.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCC-CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH  172 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~-~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~  172 (310)
                      ...+|+++|.||||||||+|+|++.. ..+++.|++|.......+           ...+.++||||+.....
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtpG~~~~~~  180 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-----------GKELELLDTPGILWPKF  180 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-----------TTTEEEEECCCCCCSCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-----------CCCEEEEECcCcCCCCC
Confidence            34579999999999999999999987 455889999987654332           12689999999986543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.89  E-value=8.6e-09  Score=97.47  Aligned_cols=141  Identities=16%  Similarity=0.112  Sum_probs=74.8

Q ss_pred             hhhhhhccCe--EEEEcCCCCcHHHHHHHHHcCCCC---CC-CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCC
Q 021615           95 LELILRVVAD--VGLVGLPNAGKSTLLAAITHAKPD---IA-DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI  168 (310)
Q Consensus        95 ~~~~l~~~~~--V~lvG~~naGKSSLln~L~~~~~~---i~-~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~  168 (310)
                      +.+.++.+..  ++|+|++|||||||+|.|+|....   +. ..+..+.. ..+.+.....     +...++++|+||+.
T Consensus        33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~-----l~~~ltv~D~~~~g  106 (427)
T 2qag_B           33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESN-----VRLKLTIVSTVGFG  106 (427)
T ss_dssp             HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC-------CEEEEEEEEEECCC
T ss_pred             CceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCc-----cccccchhhhhhhh
Confidence            3344455545  999999999999999999997521   11 12233332 2222221111     11268999999986


Q ss_pred             ccccCC---c----hHHHHHHHHhh-------------hc--C-EEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCE
Q 021615          169 EGAHLG---K----GLGRNFLRHLR-------------RT--R-LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF  225 (310)
Q Consensus       169 ~~~~~~---~----~l~~~~~~~l~-------------~~--d-~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~  225 (310)
                      ......   .    .+...|...+.             .+  | +++||+|+..+....+.+ +.+.|.      .+.|+
T Consensus       107 ~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Die-ilk~L~------~~~~v  179 (427)
T 2qag_B          107 DQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLV-TMKKLD------SKVNI  179 (427)
T ss_dssp             C-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHH-HHHHTC------SCSEE
T ss_pred             hccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHH-HHHHHh------hCCCE
Confidence            532100   0    12222222221             11  2 466777877655555543 333332      36899


Q ss_pred             EEEEeCCCCCCcHhHHHHHHHHHH
Q 021615          226 IVVLNKIDLPEARDRLQSLTEEIL  249 (310)
Q Consensus       226 ivv~NK~Dl~~~~~~~~~l~~~l~  249 (310)
                      |+|+||+|.....+ ...+.+.+.
T Consensus       180 I~Vi~KtD~Lt~~E-~~~l~~~I~  202 (427)
T 2qag_B          180 IPIIAKADAISKSE-LTKFKIKIT  202 (427)
T ss_dssp             EEEESCGGGSCHHH-HHHHHHHHH
T ss_pred             EEEEcchhccchHH-HHHHHHHHH
Confidence            99999999987644 344444333

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.85  E-value=5.9e-09  Score=94.52  Aligned_cols=102  Identities=18%  Similarity=0.172  Sum_probs=74.6

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                      .+++|||  +.++.....       .+++.+|++++|+|++++. ++..+..|..++..     .+.|+++|+||+|+.+
T Consensus        64 ~~~iwD~--qer~~~l~~-------~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL~~  129 (301)
T 1u0l_A           64 SGVIENV--LHRKNLLTK-------PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYD  129 (301)
T ss_dssp             SEEEEEE--CCCSCEETT-------TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCC
T ss_pred             eEEEEEE--ccccceeec-------cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHcCC
Confidence            6899999  555433222       3577999999999999876 57777778777765     3689999999999986


Q ss_pred             cHhH--HHHHHHHHHh-cCCCccccCccCCHHHHHHHHhh
Q 021615          237 ARDR--LQSLTEEILK-IGCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       237 ~~~~--~~~l~~~l~~-~g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      ..+.  .+.+.+.+.. ..+.++||+++.|++++|..+..
T Consensus       130 ~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          130 EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             chhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            5331  2333333322 45667999999999999988754

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.82  E-value=7.6e-10  Score=102.63  Aligned_cols=110  Identities=11%  Similarity=0.137  Sum_probs=75.7

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCC----------CcHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEELRMYNPDYLERPFIV  227 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~----------~~~~~~~~~~~~l~~~~~~~~~~p~iv  227 (310)
                      .+.+|||+|+.....       .|..+++.++++|||+|+++.          ..+.+...|++.+.... ...+.|+++
T Consensus       194 ~l~iwDt~GQe~~r~-------~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~-~~~~~piiL  265 (353)
T 1cip_A          194 HFKMFDVGGQRSERK-------KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK-WFTDTSIIL  265 (353)
T ss_dssp             EEEEEEECCSGGGGG-------GGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG-GGTTSEEEE
T ss_pred             eEEEEeCCCchhhhH-------HHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc-cccCCcEEE
Confidence            689999999976532       345567899999999999983          45666666666665421 124689999


Q ss_pred             EEeCCCCCCcH----------------hHHHHHHHHHH----h---------cCCCccccCccCCHHHHHHHHhhcc
Q 021615          228 VLNKIDLPEAR----------------DRLQSLTEEIL----K---------IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       228 v~NK~Dl~~~~----------------~~~~~l~~~l~----~---------~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      |+||+|+....                ...++..+.+.    .         +.+.++||+++.|+.++|..+....
T Consensus       266 v~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i  342 (353)
T 1cip_A          266 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI  342 (353)
T ss_dssp             EEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence            99999985211                01222222222    1         2244589999999999999987654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.81  E-value=8e-09  Score=101.53  Aligned_cols=67  Identities=25%  Similarity=0.183  Sum_probs=46.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCC-CCCCCccCCCceEEEeCCCCCccc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD-PTLGAEKYSSEATLADLPGLIEGA  171 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~-~~~~~~~~~~~~~i~DtPG~~~~~  171 (310)
                      ...|+|+|.||+|||||+|+|++....+ ++++||...+.+.+.+. +...  .....+.++||||+.+..
T Consensus        38 ~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~--~~~~~i~LiDTpGi~~~~  105 (592)
T 1f5n_A           38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPK--KPGHILVLLDTEGLGDVE  105 (592)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSS--STTCEEEEEEECCBCCGG
T ss_pred             CcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeeccccc--CCCceEEEecCCCcCccc
Confidence            4679999999999999999999987544 56667765555554210 0000  012379999999998653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.80  E-value=8.7e-09  Score=99.61  Aligned_cols=161  Identities=15%  Similarity=0.136  Sum_probs=85.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHH------cCCCCC-CCCCCce-e---------eccceEeeCCCCCC-----------Cc
Q 021615          102 VADVGLVGLPNAGKSTLLAAIT------HAKPDI-ADYPFTT-L---------MPNLGRLDGDPTLG-----------AE  153 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~------~~~~~i-~~~~~tT-~---------~~~~~~v~~~~~~~-----------~~  153 (310)
                      ...|+++|.+||||||+++.|.      +.++.+ ..-++.. .         ......+.......           ..
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~  180 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK  180 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence            4579999999999999999998      555332 1101100 0         00011111000000           00


Q ss_pred             cCCCceEEEeCCCCCccccCCchHHHHHHHH--hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCE-EEEEe
Q 021615          154 KYSSEATLADLPGLIEGAHLGKGLGRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLN  230 (310)
Q Consensus       154 ~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~--l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~-ivv~N  230 (310)
                      .-...++|+||||.....   ..+.......  +..+|.+++|+|+.....  .... ...+..      ..|+ ++|+|
T Consensus       181 ~~~~DvvIIDTpG~~~~~---~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~-a~~~~~------~~~i~gvVlN  248 (504)
T 2j37_W          181 NENFEIIIVDTSGRHKQE---DSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQ-AKAFKD------KVDVASVIVT  248 (504)
T ss_dssp             HTTCCEEEEEECCCCTTC---HHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHH-HHHHHH------HHCCCCEEEE
T ss_pred             HCCCcEEEEeCCCCcccc---hhHHHHHHHHHhhhcCceEEEEEecccccc--HHHH-HHHHHh------hcCceEEEEe
Confidence            011279999999986531   1222222111  236899999999987532  2222 223332      2464 88999


Q ss_pred             CCCCCCcHhHHHHHHHHHHh----cC----------C---CccccCccCC-HHHHHHHHhhc
Q 021615          231 KIDLPEARDRLQSLTEEILK----IG----------C---DKVTSETELS-SEDAVKSLSTE  274 (310)
Q Consensus       231 K~Dl~~~~~~~~~l~~~l~~----~g----------~---~~~sa~~~~g-i~~l~~~l~~~  274 (310)
                      |+|..........+...+..    ++          +   ..+|+..+.| +.++++.+.+.
T Consensus       249 K~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          249 KLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             CCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99987543222222222210    00          1   1158888888 88888887655

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.74  E-value=8.2e-08  Score=90.59  Aligned_cols=155  Identities=16%  Similarity=0.201  Sum_probs=85.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC----CC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKP----DI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~----~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      .|+|+|++|||||||+|.|+|...    .+ ....-+|..   +.+...+.      ...++++|+||+....   .. .
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~---~~v~q~~~------~~~ltv~D~~g~~~~~---~~-~  137 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME---RHPYKHPN------IPNVVFWDLPGIGSTN---FP-P  137 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC---CEEEECSS------CTTEEEEECCCGGGSS---CC-H
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee---EEeccccc------cCCeeehHhhcccchH---HH-H
Confidence            799999999999999999999532    12 111111211   22221111      1268999999985321   11 2


Q ss_pred             HHHHHH--hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC------------CcHhHHHHH
Q 021615          179 RNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP------------EARDRLQSL  244 (310)
Q Consensus       179 ~~~~~~--l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~------------~~~~~~~~l  244 (310)
                      ..++..  +...+..++ ++... ...+.. .+...+..     .++|+++|.||.|+.            ......+.+
T Consensus       138 ~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv-~la~aL~~-----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l  209 (413)
T 1tq4_A          138 DTYLEKMKFYEYDFFII-ISATR-FKKNDI-DIAKAISM-----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI  209 (413)
T ss_dssp             HHHHHHTTGGGCSEEEE-EESSC-CCHHHH-HHHHHHHH-----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred             HHHHHHcCCCccCCeEE-eCCCC-ccHHHH-HHHHHHHh-----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence            233333  344455554 66543 223333 34445544     368999999999875            122222333


Q ss_pred             HHHH----HhcCC-----Ccccc--CccCCHHHHHHHHhhccCCcc
Q 021615          245 TEEI----LKIGC-----DKVTS--ETELSSEDAVKSLSTEGGEAD  279 (310)
Q Consensus       245 ~~~l----~~~g~-----~~~sa--~~~~gi~~l~~~l~~~~~~~~  279 (310)
                      .+..    ...+.     ..+|+  ..+.|++++.+.+...+.+.+
T Consensus       210 ~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          210 RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence            3322    23221     22577  455569999998877665544

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=98.74  E-value=1.9e-09  Score=100.34  Aligned_cols=110  Identities=12%  Similarity=0.161  Sum_probs=71.7

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPDYLERPFIV  227 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l~~~~~~~~~~p~iv  227 (310)
                      .+.+|||+|+....       ..+..+++.++++|||+|+++          ...+.+...|+..+.... ...+.|+++
T Consensus       202 ~l~i~Dt~Gq~~~r-------~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~-~~~~~piIL  273 (362)
T 1zcb_A          202 PFKMVDVGGQRSER-------KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR-VFSNVSIIL  273 (362)
T ss_dssp             EEEEEEECC--------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG-GGTTSEEEE
T ss_pred             EEEEEeccchhhhh-------hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch-hhCCCCEEE
Confidence            78999999996542       234456789999999999998          456666666776665421 124689999


Q ss_pred             EEeCCCCCCcH-----------------hHHHHHHHHH----H---------hcCCCccccCccCCHHHHHHHHhhcc
Q 021615          228 VLNKIDLPEAR-----------------DRLQSLTEEI----L---------KIGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       228 v~NK~Dl~~~~-----------------~~~~~l~~~l----~---------~~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      |+||+|+....                 ...++..+.+    .         .+.+.++||+++.|+.++|..+....
T Consensus       274 v~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i  351 (362)
T 1zcb_A          274 FLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  351 (362)
T ss_dssp             EEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence            99999985211                 1122222222    1         12234589999999999999886644

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.74  E-value=6.6e-09  Score=92.43  Aligned_cols=58  Identities=28%  Similarity=0.413  Sum_probs=39.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  171 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~  171 (310)
                      .+|+++|.||+|||||+|+|++... .+++.+++|.......+  .         ..+.+|||||+....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~---------~~~~l~DtpG~~~~~  158 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL--E---------NGVKILDTPGILYKN  158 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC--T---------TSCEEESSCEECCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe--C---------CCEEEEECCCcccCc
Confidence            6899999999999999999999875 45788888876543222  1         268999999998754

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=98.64  E-value=1.4e-08  Score=95.42  Aligned_cols=70  Identities=14%  Similarity=0.218  Sum_probs=55.3

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPDYLERPFIV  227 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l~~~~~~~~~~p~iv  227 (310)
                      .+.+|||+|+.....       .+..+++.+++++||+|+++          ..+++....|++++.... ...+.|+++
T Consensus       218 ~l~iwDtaGQe~~r~-------~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~-~~~~~piiL  289 (402)
T 1azs_C          218 NFHMFDVGGQRDERR-------KWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR-WLRTISVIL  289 (402)
T ss_dssp             EEEEEEECCSGGGGG-------GGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT-TCSSCCEEE
T ss_pred             cceecccchhhhhhh-------hhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc-cCCCCeEEE
Confidence            689999999976532       34456789999999999998          777888888888776532 224689999


Q ss_pred             EEeCCCCC
Q 021615          228 VLNKIDLP  235 (310)
Q Consensus       228 v~NK~Dl~  235 (310)
                      |+||+|+.
T Consensus       290 vgNK~DL~  297 (402)
T 1azs_C          290 FLNKQDLL  297 (402)
T ss_dssp             EEECHHHH
T ss_pred             EEEChhhh
Confidence            99999984

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.61  E-value=1.1e-08  Score=94.69  Aligned_cols=110  Identities=11%  Similarity=0.135  Sum_probs=75.7

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccC----------CCCcHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----------AENPVNDYRTVKEELRMYNPDYLERPFIV  227 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s----------~~~~~~~~~~~~~~l~~~~~~~~~~p~iv  227 (310)
                      .+.+|||+|+.+...       .+..+++.++++++|+|++          +..+++....|++++.... ...+.|+++
T Consensus       184 ~l~iwDtaGQe~~r~-------~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~-~~~~~piiL  255 (354)
T 2xtz_A          184 VYRLFDVGGQRNERR-------KWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-CFEKTSFML  255 (354)
T ss_dssp             EEEEEEECCSTTGGG-------GTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG-GGSSCEEEE
T ss_pred             eeEEEECCCchhhhH-------HHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc-ccCCCeEEE
Confidence            689999999976533       3345678999999999998          5667777777777776432 124689999


Q ss_pred             EEeCCCCCCcH-------------------------hHHHHH-HHHHHh------------cC--CCccccCccCCHHHH
Q 021615          228 VLNKIDLPEAR-------------------------DRLQSL-TEEILK------------IG--CDKVTSETELSSEDA  267 (310)
Q Consensus       228 v~NK~Dl~~~~-------------------------~~~~~l-~~~l~~------------~g--~~~~sa~~~~gi~~l  267 (310)
                      |+||+|+....                         +....+ .+.+..            ..  +.++||+++.|+.++
T Consensus       256 vgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~v  335 (354)
T 2xtz_A          256 FLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKT  335 (354)
T ss_dssp             EEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHH
T ss_pred             EEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHH
Confidence            99999984311                         111122 222211            12  356999999999999


Q ss_pred             HHHHhhcc
Q 021615          268 VKSLSTEG  275 (310)
Q Consensus       268 ~~~l~~~~  275 (310)
                      |..+....
T Consensus       336 F~~v~~~I  343 (354)
T 2xtz_A          336 FKLVDETL  343 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99886644

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.53  E-value=2.1e-07  Score=92.21  Aligned_cols=76  Identities=21%  Similarity=0.337  Sum_probs=40.5

Q ss_pred             CceEEEeCCCCCcc--ccCCchHHHHHHHH----hhhc-CEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEE
Q 021615          157 SEATLADLPGLIEG--AHLGKGLGRNFLRH----LRRT-RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL  229 (310)
Q Consensus       157 ~~~~i~DtPG~~~~--~~~~~~l~~~~~~~----l~~~-d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~  229 (310)
                      ..+.++|.||+...  ..++......+...    +... .+++.++++...........+..++.   +  .+.+.|+|+
T Consensus       147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~---~--~g~rtI~Vl  221 (608)
T 3szr_A          147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD---P--EGDRTIGIL  221 (608)
T ss_dssp             CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC---S--SCCSEEEEE
T ss_pred             CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh---h--cCCceEEEe
Confidence            36899999998763  33344444333332    3332 55666666443222222233333443   2  467899999


Q ss_pred             eCCCCCCc
Q 021615          230 NKIDLPEA  237 (310)
Q Consensus       230 NK~Dl~~~  237 (310)
                      ||.|+...
T Consensus       222 TK~Dlv~~  229 (608)
T 3szr_A          222 TKPDLVDK  229 (608)
T ss_dssp             ECGGGSSS
T ss_pred             cchhhcCc
Confidence            99998753

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.44  E-value=2.4e-07  Score=79.10  Aligned_cols=116  Identities=11%  Similarity=-0.025  Sum_probs=63.9

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHh-cCCC--CCCCCEEEEEeCC-C
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM-YNPD--YLERPFIVVLNKI-D  233 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~-~~~~--~~~~p~ivv~NK~-D  233 (310)
                      ++.+.-+||-.+. .-+..+...|..|++.+|++|||||+++....+..+.+ .+|.. ....  +.+.|++|++||. |
T Consensus        97 k~~~~~~~~~~~~-GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL-~eL~~mL~ee~~L~gapLLVlANKqqD  174 (227)
T 3l82_B           97 KMFSRHNEGDDQQ-GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQG  174 (227)
T ss_dssp             ---------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHH-HHHHHHSCTTSSCSCSCEEEEEEESST
T ss_pred             hcccccCCCcccc-CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHH-HHHHHHhcchhhhCCCeEEEEeCCCcC
Confidence            4556666652111 11123444566678899999999999986544322222 22222 2222  3578999999995 7


Q ss_pred             CCCcHhHHHHHHHHHH------hcCCCccccCccCCHHHHHHHHhhccC
Q 021615          234 LPEARDRLQSLTEEIL------KIGCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       234 l~~~~~~~~~l~~~l~------~~g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      +..+-. ..++.+.+.      ...+..++|.+|+|+.+-+++|+....
T Consensus       175 lp~Ams-~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          175 DVKRMP-CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             TSCBCC-HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             ccCCCC-HHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            765532 344554443      123444899999999999999987664

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.43  E-value=5.8e-07  Score=81.38  Aligned_cols=85  Identities=16%  Similarity=0.146  Sum_probs=64.9

Q ss_pred             HhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--HHHHHHHHHHhcCC--Ccccc
Q 021615          184 HLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIGC--DKVTS  258 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~l~~~l~~~g~--~~~sa  258 (310)
                      ++..+|++++|+|++++. ++..+..|+..+..     .++|.++|+||+|+.+..+  ..+++.+.+...++  ..+||
T Consensus        76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA  150 (302)
T 2yv5_A           76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSA  150 (302)
T ss_dssp             EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCT
T ss_pred             HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEEC
Confidence            467899999999999875 66666777776665     4789999999999986542  24455555555554  45899


Q ss_pred             CccCCHHHHHHHHhh
Q 021615          259 ETELSSEDAVKSLST  273 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~  273 (310)
                      +++.|+++++..+..
T Consensus       151 ~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          151 KTGEGIDELVDYLEG  165 (302)
T ss_dssp             TTCTTHHHHHHHTTT
T ss_pred             CCCCCHHHHHhhccC
Confidence            999999999988653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.42  E-value=1.4e-06  Score=82.75  Aligned_cols=95  Identities=14%  Similarity=0.154  Sum_probs=54.4

Q ss_pred             ceEEEeCCCCCccccCCchHHHHH--HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~--~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .+.|+||||.....   ..+-...  +..+..+|.+++|+|+....  +... ....+..     .-.+..+|+||+|..
T Consensus       184 DvVIIDTaGrl~~d---~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~-~a~~f~~-----~~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          184 DIIIVDTAGRHKED---KALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYN-QALAFKE-----ATPIGSIIVTKLDGS  252 (443)
T ss_dssp             SEEEEECCCCSSCC---HHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHH-HHHHHHH-----SCTTEEEEEECCSSC
T ss_pred             CEEEEECCCcccch---HHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHH-HHHHHHh-----hCCCeEEEEECCCCc
Confidence            78999999975431   2222221  12234679999999998632  2222 2233332     124567899999987


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSED  266 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~  266 (310)
                      ....   .........+.+..-..+|+++++
T Consensus       253 ~~gG---~~ls~~~~~g~PI~fig~Ge~vdd  280 (443)
T 3dm5_A          253 AKGG---GALSAVAATGAPIKFIGTGEKIDD  280 (443)
T ss_dssp             SSHH---HHHHHHHTTCCCEEEEECSSSTTC
T ss_pred             cccc---HHHHHHHHHCCCEEEEEcCCChHH
Confidence            6532   223333455665544556776644

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.39  E-value=3.7e-07  Score=86.73  Aligned_cols=68  Identities=15%  Similarity=0.214  Sum_probs=40.2

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHH--HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCC-C-EEEEEeCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFL--RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER-P-FIVVLNKID  233 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~--~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~-p-~ivv~NK~D  233 (310)
                      .+.|+||||.....   ..+.....  ..+..+|.+++|+|+....  +... .   +..+..   .. | ..+|+||+|
T Consensus       182 D~vIIDT~G~~~~~---~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~-~---~~~~~~---~~~~i~gvVlnK~D  249 (432)
T 2v3c_C          182 DVLIIDTAGRHKEE---KGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGI-Q---AKAFKE---AVGEIGSIIVTKLD  249 (432)
T ss_dssp             SEEEEECCCSCSSH---HHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHH-H---HHHHHT---TSCSCEEEEEECSS
T ss_pred             CEEEEcCCCCcccc---HHHHHHHHHHHHHhcCcceeEEeeccccH--HHHH-H---HHHHhh---cccCCeEEEEeCCC
Confidence            78999999986431   11222211  1123589999999987542  2222 2   222221   34 5 889999999


Q ss_pred             CCCc
Q 021615          234 LPEA  237 (310)
Q Consensus       234 l~~~  237 (310)
                      ....
T Consensus       250 ~~~~  253 (432)
T 2v3c_C          250 GSAK  253 (432)
T ss_dssp             SCST
T ss_pred             Cccc
Confidence            8643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.36  E-value=1.1e-06  Score=78.75  Aligned_cols=98  Identities=18%  Similarity=0.222  Sum_probs=67.2

Q ss_pred             EEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH
Q 021615          161 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR  240 (310)
Q Consensus       161 i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~  240 (310)
                      |-+.||+...      ..++++++++.+|++++|+|+.++....+.     .+..+.   .++|.++|+||+|+.+. +.
T Consensus         3 i~w~PGhm~k------a~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-----~l~~~l---~~kp~ilVlNK~DL~~~-~~   67 (282)
T 1puj_A            3 IQWFPGHMAK------ARREVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDIL---KNKPRIMLLNKADKADA-AV   67 (282)
T ss_dssp             ------CTTH------HHHHHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHC---SSSCEEEEEECGGGSCH-HH
T ss_pred             CcCCchHHHH------HHHHHHHHHhhCCEEEEEEeCCCCCccCCH-----HHHHHH---CCCCEEEEEECcccCCH-HH
Confidence            4567998643      346888999999999999999987655421     122221   37899999999999874 34


Q ss_pred             HHHHHHHHHhcCCC--ccccCccCCHHHHHHHHhh
Q 021615          241 LQSLTEEILKIGCD--KVTSETELSSEDAVKSLST  273 (310)
Q Consensus       241 ~~~l~~~l~~~g~~--~~sa~~~~gi~~l~~~l~~  273 (310)
                      .+.+.+.+...++.  .+|++++.|+.+++..+..
T Consensus        68 ~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~  102 (282)
T 1puj_A           68 TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKE  102 (282)
T ss_dssp             HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHH
T ss_pred             HHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHH
Confidence            55666666655554  5899999999998886644

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.14  E-value=5e-06  Score=79.08  Aligned_cols=69  Identities=16%  Similarity=0.080  Sum_probs=43.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC---------------CCCCCCCCCceeeccceEeeCCCCC---CCccCCCceEEEe
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA---------------KPDIADYPFTTLMPNLGRLDGDPTL---GAEKYSSEATLAD  163 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~---------------~~~i~~~~~tT~~~~~~~v~~~~~~---~~~~~~~~~~i~D  163 (310)
                      ..-|+|+|.+++|||||+|.|++.               ...+-....||...+.|.+-....+   ....-...+.++|
T Consensus        67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD  146 (447)
T 3q5d_A           67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD  146 (447)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred             eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence            345899999999999999999974               2223222235666666665432100   0000012689999


Q ss_pred             CCCCCcc
Q 021615          164 LPGLIEG  170 (310)
Q Consensus       164 tPG~~~~  170 (310)
                      |||+.+.
T Consensus       147 TeG~~~~  153 (447)
T 3q5d_A          147 TQGTFDS  153 (447)
T ss_dssp             EECCCSS
T ss_pred             CCccccc
Confidence            9998654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.12  E-value=2.3e-06  Score=76.45  Aligned_cols=100  Identities=11%  Similarity=-0.050  Sum_probs=64.9

Q ss_pred             chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHH---HHHHhcCCCCCCCCEEEEEeC-CCCCCcHhHHHHHHHHHH-
Q 021615          175 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVK---EELRMYNPDYLERPFIVVLNK-IDLPEARDRLQSLTEEIL-  249 (310)
Q Consensus       175 ~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~---~~l~~~~~~~~~~p~ivv~NK-~Dl~~~~~~~~~l~~~l~-  249 (310)
                      ..+...|..+++.+|++|||||+++.+..+..+.+.   ..+.. ...+.+.|++|++|| .|+..+-. ..++.+.+. 
T Consensus       198 ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e-~~~l~~apLLVfANKkQDlp~Ams-~~EI~e~L~L  275 (312)
T 3l2o_B          198 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDP-AFGSSGRPLLVLSCISQGDVKRMP-CFYLAHELHL  275 (312)
T ss_dssp             CCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCH-HHHCTTCCEEEEEEESSTTSCBCC-HHHHHHHTTG
T ss_pred             HHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcc-hhhcCCCeEEEEeCCcccccCCCC-HHHHHHHcCC
Confidence            344556667789999999999999876443222221   11211 001247899999996 58876532 344554443 


Q ss_pred             -----hcCCCccccCccCCHHHHHHHHhhccC
Q 021615          250 -----KIGCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       250 -----~~g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                           ...+..++|.+|+|+.+-+++|+....
T Consensus       276 ~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          276 NLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             GGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             ccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence                 122344899999999999999987764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.11  E-value=1.3e-06  Score=82.81  Aligned_cols=95  Identities=13%  Similarity=0.057  Sum_probs=50.3

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHH--HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~--~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .+.|+||||..... ....+......  ..-..+.+++|+|+.....   ...+.+.+...     -.+..+|+||+|..
T Consensus       181 DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~-----~~~~gVIlTKlD~~  251 (433)
T 3kl4_A          181 DIIIVDTAGRHGYG-EETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQA-----SPIGSVIITKMDGT  251 (433)
T ss_dssp             SEEEEEECCCSSSC-CTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHH-----CSSEEEEEECGGGC
T ss_pred             CEEEEECCCCcccc-CCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhcc-----cCCcEEEEeccccc
Confidence            68999999974410 11222222211  1224689999999986422   22222333321     24678999999987


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSS  264 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi  264 (310)
                      .....   ........+.+.....+|+++
T Consensus       252 a~~G~---als~~~~~g~Pi~fig~Ge~v  277 (433)
T 3kl4_A          252 AKGGG---ALSAVVATGATIKFIGTGEKI  277 (433)
T ss_dssp             SCHHH---HHHHHHHHTCEEEEEECCSSS
T ss_pred             ccchH---HHHHHHHHCCCEEEEECCCCh
Confidence            54322   222233345544333345554

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.02  E-value=4.5e-06  Score=73.97  Aligned_cols=94  Identities=27%  Similarity=0.281  Sum_probs=64.0

Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHH
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS  243 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~  243 (310)
                      .||+...+      .++++.++.++|++++|+|+.++......     .+. +   . ++|.++|+||+|+.+. +..+.
T Consensus         4 ~PGhm~ka------~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-l---l-~k~~iivlNK~DL~~~-~~~~~   66 (262)
T 3cnl_A            4 YPGHIEKA------KRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-F---S-RKETIILLNKVDIADE-KTTKK   66 (262)
T ss_dssp             -----CCT------THHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-C---T-TSEEEEEEECGGGSCH-HHHHH
T ss_pred             CchHHHHH------HHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-h---c-CCCcEEEEECccCCCH-HHHHH
Confidence            47776543      24778889999999999999876554321     111 1   1 6899999999999875 33455


Q ss_pred             HHHHHHhcCCC-ccccCccCCHHHHHHHHhhc
Q 021615          244 LTEEILKIGCD-KVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       244 l~~~l~~~g~~-~~sa~~~~gi~~l~~~l~~~  274 (310)
                      +.+.+...++. .+|++++.|+.+++..+...
T Consensus        67 ~~~~~~~~g~~v~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           67 WVEFFKKQGKRVITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             HHHHHHHTTCCEEECCTTSCHHHHHHHHCCCT
T ss_pred             HHHHHHHcCCeEEEECCCCcCHHHHHHHHHHh
Confidence            56666554332 78999999999999887543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.00  E-value=6.1e-06  Score=76.77  Aligned_cols=86  Identities=17%  Similarity=0.298  Sum_probs=59.7

Q ss_pred             HHHHHh-hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH---hHH-HHHHHHHHhcCC-
Q 021615          180 NFLRHL-RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRL-QSLTEEILKIGC-  253 (310)
Q Consensus       180 ~~~~~l-~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~-~~l~~~l~~~g~-  253 (310)
                      .++.++ ++++++++|+|++++..     .|..++..+.   .++|+++|+||+|+.+..   +.. +.+.+.+...|+ 
T Consensus        63 ~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l---~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~  134 (369)
T 3ec1_A           63 SMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA---ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLC  134 (369)
T ss_dssp             HHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC---TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh---CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCC
Confidence            445555 78899999999998552     2333444432   378999999999997652   222 233334566666 


Q ss_pred             ----CccccCccCCHHHHHHHHhh
Q 021615          254 ----DKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       254 ----~~~sa~~~~gi~~l~~~l~~  273 (310)
                          ..+||+++.|++++++.+..
T Consensus       135 ~~~v~~iSA~~g~gi~~L~~~I~~  158 (369)
T 3ec1_A          135 PVDVCLVSAAKGIGMAKVMEAINR  158 (369)
T ss_dssp             CSEEEECBTTTTBTHHHHHHHHHH
T ss_pred             cccEEEEECCCCCCHHHHHHHHHh
Confidence                35899999999999998854

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.98  E-value=7e-06  Score=76.35  Aligned_cols=86  Identities=14%  Similarity=0.183  Sum_probs=58.7

Q ss_pred             HHHHHh-hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHH-HHHHHHhcCC-
Q 021615          180 NFLRHL-RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQS-LTEEILKIGC-  253 (310)
Q Consensus       180 ~~~~~l-~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~-l~~~l~~~g~-  253 (310)
                      .+++++ +.++++++|+|++++.     ..|..++..+.   .++|+++|+||+|+.+...   ...+ +...+...++ 
T Consensus        61 ~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~---~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~  132 (368)
T 3h2y_A           61 RILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV---GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK  132 (368)
T ss_dssp             HHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS---SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh---CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC
Confidence            344554 4566999999998631     34555565553   3789999999999976432   2222 2333455565 


Q ss_pred             ----CccccCccCCHHHHHHHHhh
Q 021615          254 ----DKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       254 ----~~~sa~~~~gi~~l~~~l~~  273 (310)
                          ..+||+++.|+++++..+..
T Consensus       133 ~~~v~~iSA~~g~gi~~L~~~l~~  156 (368)
T 3h2y_A          133 PEDVFLISAAKGQGIAELADAIEY  156 (368)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccEEEEeCCCCcCHHHHHhhhhh
Confidence                35899999999999998854

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.98  E-value=3e-05  Score=69.95  Aligned_cols=96  Identities=14%  Similarity=0.116  Sum_probs=52.6

Q ss_pred             ceEEEeCCCCCccccCCchHHHHH--HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDL  234 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~--~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl  234 (310)
                      .+.++||||..... ....+....  ...+..+|.+++|+|+...  .+.+..+ +.+..      ..| ..+|+||+|.
T Consensus       182 D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~-~~~~~------~~~i~gvVlnk~D~  251 (297)
T 1j8m_F          182 EIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLA-SKFNQ------ASKIGTIIITKMDG  251 (297)
T ss_dssp             SEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHH-HHHHH------TCTTEEEEEECGGG
T ss_pred             CEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHH-HHHHh------hCCCCEEEEeCCCC
Confidence            68999999986510 001121111  1234468999999998743  2222222 23322      244 6789999998


Q ss_pred             CCcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615          235 PEARDRLQSLTEEILKIGCDKVTSETELSSED  266 (310)
Q Consensus       235 ~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~  266 (310)
                      .....   .........+.+......|+++++
T Consensus       252 ~~~~g---~~~~~~~~~~~pi~~i~~Ge~v~d  280 (297)
T 1j8m_F          252 TAKGG---GALSAVAATGATIKFIGTGEKIDE  280 (297)
T ss_dssp             CTTHH---HHHHHHHTTTCCEEEEECSSSTTC
T ss_pred             CcchH---HHHHHHHHHCcCEEEEeCCCChhh
Confidence            65422   233344455555544445666543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.72  E-value=1.5e-05  Score=72.19  Aligned_cols=28  Identities=29%  Similarity=0.248  Sum_probs=22.8

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.....++|+|++|||||||+|+|.+..
T Consensus       170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          170 HFQDKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             GGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence            3445679999999999999999999864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.71  E-value=3.3e-05  Score=70.59  Aligned_cols=95  Identities=17%  Similarity=0.131  Sum_probs=50.3

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHH--HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFL--RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~--~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .+.++||+|......   .+...+.  ...-..|-.++|+|+....   +.......+...     -....+++||.|..
T Consensus       213 d~vliDtaG~~~~~~---~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~-----~~it~iilTKlD~~  281 (328)
T 3e70_C          213 DVVLIDTAGRSETNR---NLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA-----VKIDGIILTKLDAD  281 (328)
T ss_dssp             SEEEEEECCSCCTTT---CHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH-----SCCCEEEEECGGGC
T ss_pred             hhhHHhhccchhHHH---HHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh-----cCCCEEEEeCcCCc
Confidence            578899999864322   1222211  1122468899999987642   222222333321     12347888999975


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSED  266 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~  266 (310)
                      ..-   -.........+.+..-..+|+++++
T Consensus       282 a~~---G~~l~~~~~~~~pi~~i~~Ge~v~d  309 (328)
T 3e70_C          282 ARG---GAALSISYVIDAPILFVGVGQGYDD  309 (328)
T ss_dssp             SCC---HHHHHHHHHHTCCEEEEECSSSTTC
T ss_pred             cch---hHHHHHHHHHCCCEEEEeCCCCccc
Confidence            432   2233344455655554556666533

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.61  E-value=0.00013  Score=70.03  Aligned_cols=156  Identities=15%  Similarity=0.152  Sum_probs=76.2

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCC----CCC---CCCCCce----------eeccceEeeCCCCCCCc--------
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAK----PDI---ADYPFTT----------LMPNLGRLDGDPTLGAE--------  153 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~----~~i---~~~~~tT----------~~~~~~~v~~~~~~~~~--------  153 (310)
                      +....-|+|+|++|||||||++.|.+..    ..+   +.-.+..          ....++.+.........        
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~  369 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ  369 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence            3444568999999999999999997631    111   1111110          01112222211110000        


Q ss_pred             ---cCCCceEEEeCCCCCcccc-CCchHHHHHHHHhh-----hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC
Q 021615          154 ---KYSSEATLADLPGLIEGAH-LGKGLGRNFLRHLR-----RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP  224 (310)
Q Consensus       154 ---~~~~~~~i~DtPG~~~~~~-~~~~l~~~~~~~l~-----~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p  224 (310)
                         .-+..+.++||+|...... .-..+. .+.+.++     ..+-+++|+|+....  ..+..+ ..+...    .+ .
T Consensus       370 ~a~~~~~DvVLIDTaGrl~~~~~lm~EL~-kiv~iar~l~~~~P~evLLvLDattGq--~al~~a-k~f~~~----~~-i  440 (503)
T 2yhs_A          370 AAKARNIDVLIADTAGRLQNKSHLMEELK-KIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQA-KLFHEA----VG-L  440 (503)
T ss_dssp             HHHHTTCSEEEECCCCSCCCHHHHHHHHH-HHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHH-HHHHHH----TC-C
T ss_pred             HHHhcCCCEEEEeCCCccchhhhHHHHHH-HHHHHHHHhccCCCCeeEEEecCcccH--HHHHHH-HHHHhh----cC-C
Confidence               0012688999999854311 001111 1222222     245788899987542  222222 222211    12 2


Q ss_pred             EEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615          225 FIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSED  266 (310)
Q Consensus       225 ~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~  266 (310)
                      ..+|+||+|-...-   -.+...+..++.+..-..+|.++++
T Consensus       441 tgvIlTKLD~takg---G~~lsi~~~~~~PI~fig~Ge~vdD  479 (503)
T 2yhs_A          441 TGITLTKLDGTAKG---GVIFSVADQFGIPIRYIGVGERIED  479 (503)
T ss_dssp             SEEEEECGGGCSCC---THHHHHHHHHCCCEEEEECSSSGGG
T ss_pred             CEEEEEcCCCcccc---cHHHHHHHHHCCCEEEEecCCChhh
Confidence            35788999964332   2233344455665555666666644

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.58  E-value=1.3e-05  Score=67.93  Aligned_cols=43  Identities=26%  Similarity=0.437  Sum_probs=33.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCCceeeccceEee
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLD  145 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~-i-~~~~~tT~~~~~~~v~  145 (310)
                      .-|+|+|++|||||||+++|.+..+. . ...+.||..|..+.+.
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~   64 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEED   64 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCT
T ss_pred             CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeec
Confidence            34899999999999999999987652 2 5566788877766543

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.56  E-value=0.00034  Score=62.91  Aligned_cols=93  Identities=11%  Similarity=0.058  Sum_probs=49.5

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhh--hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~--~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .+.|+||||.....   ..+...+...+.  .++.+++|+|++..  ..++..+.   ..+.  ..+ ..-+|+||.|..
T Consensus       184 dlvIiDT~G~~~~~---~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~---~~~~--~l~-~~giVltk~D~~  252 (296)
T 2px0_A          184 DHVFVDTAGRNFKD---PQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIV---KRFS--SVP-VNQYIFTKIDET  252 (296)
T ss_dssp             SEEEEECCCCCTTS---HHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHT---TTTS--SSC-CCEEEEECTTTC
T ss_pred             CEEEEeCCCCChhh---HHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHH---HHHh--cCC-CCEEEEeCCCcc
Confidence            79999999986431   222222323332  35678889987742  23333332   2222  112 245677999987


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSS  264 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi  264 (310)
                      ....   .....+...+.+..-...|+++
T Consensus       253 ~~~g---~~~~~~~~~~~pi~~i~~ge~v  278 (296)
T 2px0_A          253 TSLG---SVFNILAESKIGVGFMTNGQNV  278 (296)
T ss_dssp             SCCH---HHHHHHHTCSCCCSEECCSSCT
T ss_pred             cchh---HHHHHHHHHCcCEEEEECCCCC
Confidence            5422   3344455566555444445444

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.56  E-value=0.00014  Score=65.67  Aligned_cols=25  Identities=28%  Similarity=0.286  Sum_probs=21.6

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ....++++|++|||||||+|.|. ..
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            34568999999999999999999 54

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.53  E-value=4.2e-05  Score=70.67  Aligned_cols=26  Identities=27%  Similarity=0.231  Sum_probs=23.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKP  127 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~  127 (310)
                      .-.++|+|++|||||||+|.|.+...
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCEEEEECCCCccHHHHHHHHhcccc
Confidence            44799999999999999999998754

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.51  E-value=0.00035  Score=58.42  Aligned_cols=85  Identities=9%  Similarity=-0.010  Sum_probs=54.4

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .++|+|||+....         .....+..+|.+++++..+...  .....+.+.+........+.++.+|+|++|....
T Consensus        77 D~viiD~~~~~~~---------~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~  145 (206)
T 4dzz_A           77 DFAIVDGAGSLSV---------ITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT  145 (206)
T ss_dssp             SEEEEECCSSSSH---------HHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE
T ss_pred             CEEEEECCCCCCH---------HHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch
Confidence            6899999987522         2234456799999999987655  5556666777654322234567899999996533


Q ss_pred             HhHHHHHHHHHHhcCCCc
Q 021615          238 RDRLQSLTEEILKIGCDK  255 (310)
Q Consensus       238 ~~~~~~l~~~l~~~g~~~  255 (310)
                      .  ...+.+.++.++...
T Consensus       146 ~--~~~~~~~l~~~~~~v  161 (206)
T 4dzz_A          146 M--LNVLKESIKDTGVKA  161 (206)
T ss_dssp             E--EHHHHHHHHHHTCCB
T ss_pred             H--HHHHHHHHHHcCCce
Confidence            1  233444455555443

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.50  E-value=0.00016  Score=65.43  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=20.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..-|+++|++|+||||++..|.+.
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~  127 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKM  127 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHH
Confidence            345889999999999999988753

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.46  E-value=0.00047  Score=65.30  Aligned_cols=68  Identities=19%  Similarity=0.207  Sum_probs=38.6

Q ss_pred             ceEEEeCCCCCccccCCchHHHHH--HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDL  234 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~--~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl  234 (310)
                      .++|+||||.....   ..+....  ...+..++.+++|+|+....  +.+... ..+..      ..+ .-+|+||+|.
T Consensus       185 D~VIIDTpG~l~~~---~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~-~~f~~------~l~i~gvVlnK~D~  252 (433)
T 2xxa_A          185 DVLLVDTAGRLHVD---EAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTA-KAFNE------ALPLTGVVLTKVDG  252 (433)
T ss_dssp             SEEEEECCCCCTTC---HHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHH-HHHHH------HSCCCCEEEECTTS
T ss_pred             CEEEEECCCccccc---HHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHH-HHHhc------cCCCeEEEEecCCC
Confidence            68999999975431   1122221  12234678999999987542  222222 22221      123 3468999998


Q ss_pred             CCc
Q 021615          235 PEA  237 (310)
Q Consensus       235 ~~~  237 (310)
                      ...
T Consensus       253 ~~~  255 (433)
T 2xxa_A          253 DAR  255 (433)
T ss_dssp             SSC
T ss_pred             Ccc
Confidence            643

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.39  E-value=0.00032  Score=63.79  Aligned_cols=93  Identities=13%  Similarity=0.052  Sum_probs=49.0

Q ss_pred             ceEEEeCCCCCccccCCchHHHH---HHHHh-----hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEE
Q 021615          158 EATLADLPGLIEGAHLGKGLGRN---FLRHL-----RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL  229 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~---~~~~l-----~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~  229 (310)
                      .++|+||||......   .+-..   +...+     ..+|.+++|+|+...  .+.+...    ..+...  -...-+|+
T Consensus       193 D~VIIDTpg~l~~~~---~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~----~~~~~~--~~i~GvVl  261 (320)
T 1zu4_A          193 DLLLIDTAGRLQNKT---NLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQA----EEFSKV--ADVSGIIL  261 (320)
T ss_dssp             SEEEEECCCCGGGHH---HHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHH----HHHTTT--SCCCEEEE
T ss_pred             CEEEEcCCCcccccH---HHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHH----HHHhhc--CCCcEEEE
Confidence            689999999764311   11111   11111     237899999998742  3333332    233221  12345789


Q ss_pred             eCCCCCCcHhHHHHHHHHHHhcCCCccccCccCCH
Q 021615          230 NKIDLPEARDRLQSLTEEILKIGCDKVTSETELSS  264 (310)
Q Consensus       230 NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi  264 (310)
                      ||+|......   .........+.+..-...|+.+
T Consensus       262 tk~d~~~~~g---~~~~~~~~~~~Pi~~i~~Ge~~  293 (320)
T 1zu4_A          262 TKMDSTSKGG---IGLAIKELLNIPIKMIGVGEKV  293 (320)
T ss_dssp             ECGGGCSCTT---HHHHHHHHHCCCEEEEECSSST
T ss_pred             eCCCCCCchh---HHHHHHHHHCcCEEEEeCCCCc
Confidence            9999754322   2233334455555444455555

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.38  E-value=0.00021  Score=64.36  Aligned_cols=26  Identities=35%  Similarity=0.367  Sum_probs=22.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ....++++|++|||||||+|.|.+..
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCcHHHHHHHhcccc
Confidence            44568999999999999999999875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.32  E-value=0.00053  Score=61.89  Aligned_cols=23  Identities=30%  Similarity=0.380  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -.|+++|++|||||||++.|.+.
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagl  125 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRY  125 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999753

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.25  E-value=0.00013  Score=61.20  Aligned_cols=43  Identities=33%  Similarity=0.479  Sum_probs=34.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCCceeeccceEeeCC
Q 021615          105 VGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLDGD  147 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~~~-i-~~~~~tT~~~~~~~v~~~  147 (310)
                      |+|+|++|||||||+++|....+. . -..+.||..|..+..++.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~   48 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGK   48 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCc
Confidence            889999999999999999977653 2 456788888877766543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.24  E-value=0.00023  Score=64.41  Aligned_cols=82  Identities=21%  Similarity=0.231  Sum_probs=56.0

Q ss_pred             hhhcCEEEEecccCCCCcHHH-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCC--cccc
Q 021615          185 LRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCD--KVTS  258 (310)
Q Consensus       185 l~~~d~il~VvD~s~~~~~~~-~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~--~~sa  258 (310)
                      +.++|.+++|+|+..+..... +..++.....     .++|.++|+||+|+.+..+   ..+.+.+.+...|+.  .+|+
T Consensus        84 ~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~-----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa  158 (307)
T 1t9h_A           84 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA-----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS  158 (307)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT-----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred             HHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEec
Confidence            568999999999986554333 2322222222     3789999999999987643   256677777666654  3688


Q ss_pred             CccCCHHHHHHHH
Q 021615          259 ETELSSEDAVKSL  271 (310)
Q Consensus       259 ~~~~gi~~l~~~l  271 (310)
                      .++.|+++++..+
T Consensus       159 ~~~~g~~~L~~~~  171 (307)
T 1t9h_A          159 KDQDSLADIIPHF  171 (307)
T ss_dssp             HHHTTCTTTGGGG
T ss_pred             CCCCCHHHHHhhc
Confidence            8888888776653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.19  E-value=0.00018  Score=59.52  Aligned_cols=40  Identities=23%  Similarity=0.380  Sum_probs=27.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCCceeeccceE
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGR  143 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~-i-~~~~~tT~~~~~~~  143 (310)
                      -++|+|++|||||||++.|.+..+. . .....||..|..+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge   48 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE   48 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc
Confidence            4899999999999999999986531 2 33445566555443

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.07  E-value=0.0046  Score=52.27  Aligned_cols=82  Identities=13%  Similarity=0.068  Sum_probs=52.2

Q ss_pred             ceEEEeCCCC-CccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          158 EATLADLPGL-IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       158 ~~~i~DtPG~-~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                      .++|+|||+. ...         .....+..||.+++++..+. ........+.+.+....    +.++.+|+|++|...
T Consensus        69 D~viiD~p~~~~~~---------~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           69 QNIVIDTQARPEDE---------DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG----NNRFRILLTIIPPYP  134 (209)
T ss_dssp             SEEEEEEECCCSSS---------HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC----SSSEEEEECSBCCTT
T ss_pred             CEEEEeCCCCcCcH---------HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc----CCCEEEEEEecCCcc
Confidence            6899999987 432         22344568999999998764 23344445555665532    456889999999765


Q ss_pred             -cHhHHHHHHHHHHhcCCCc
Q 021615          237 -ARDRLQSLTEEILKIGCDK  255 (310)
Q Consensus       237 -~~~~~~~l~~~l~~~g~~~  255 (310)
                       ..  ..++.+.+++++...
T Consensus       135 ~~~--~~~~~~~l~~~g~~v  152 (209)
T 3cwq_A          135 SKD--GDEARQLLTTAGLPL  152 (209)
T ss_dssp             SCH--HHHHHHHHHHTTCCB
T ss_pred             chH--HHHHHHHHHHcCCch
Confidence             32  244555555565443

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.02  E-value=0.0013  Score=59.07  Aligned_cols=93  Identities=14%  Similarity=0.069  Sum_probs=45.9

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHH--HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~--~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .+.|+||||.....   ......+..  ..-.+|.+++|+|+...  .+.+..+ +.+..   .  -...-+|+||+|..
T Consensus       182 D~viiDtpp~~~~d---~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~-~~~~~---~--~~i~givlnk~d~~  250 (295)
T 1ls1_A          182 DLILVDTAGRLQID---EPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVA-RAFDE---K--VGVTGLVLTKLDGD  250 (295)
T ss_dssp             CEEEEECCCCSSCC---HHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHH-HHHHH---H--TCCCEEEEECGGGC
T ss_pred             CEEEEeCCCCcccc---HHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHH-HHHhh---c--CCCCEEEEECCCCC
Confidence            78999999875321   111112111  12257888999998742  3333322 22221   0  12345789999976


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSS  264 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi  264 (310)
                      ....   .........+.+..-...|+.+
T Consensus       251 ~~~g---~~~~~~~~~~~pi~~i~~g~~~  276 (295)
T 1ls1_A          251 ARGG---AALSARHVTGKPIYFAGVSEKP  276 (295)
T ss_dssp             SSCH---HHHHHHHHHCCCEEEEC-----
T ss_pred             ccHH---HHHHHHHHHCcCEEEEeCCCCc
Confidence            5322   2333444556655444455544

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.98  E-value=0.0021  Score=59.19  Aligned_cols=81  Identities=21%  Similarity=0.133  Sum_probs=52.5

Q ss_pred             hhhcCEEEEecccCCCCcHH-HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--HHHHHHHHHHhcCCCc--cccC
Q 021615          185 LRRTRLLVHVIDAAAENPVN-DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIGCDK--VTSE  259 (310)
Q Consensus       185 l~~~d~il~VvD~s~~~~~~-~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~l~~~l~~~g~~~--~sa~  259 (310)
                      +.++|.+++| |+..+.... .++.++-....     .++|.++|+||+|+.+..+  ..+.+...+...|+..  +|+.
T Consensus       128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~-----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~  201 (358)
T 2rcn_A          128 AANIDQIVIV-SAILPELSLNIIDRYLVGCET-----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH  201 (358)
T ss_dssp             EECCCEEEEE-EESTTTCCHHHHHHHHHHHHH-----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred             HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHh-----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence            4688999976 444443322 22222211122     3678899999999987543  2455666677666654  7999


Q ss_pred             ccCCHHHHHHHH
Q 021615          260 TELSSEDAVKSL  271 (310)
Q Consensus       260 ~~~gi~~l~~~l  271 (310)
                      ++.|+.++...+
T Consensus       202 ~~~gl~~L~~~~  213 (358)
T 2rcn_A          202 TQDGLKPLEEAL  213 (358)
T ss_dssp             TTBTHHHHHHHH
T ss_pred             CCcCHHHHHHhc
Confidence            999999988764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.94  E-value=0.0004  Score=58.46  Aligned_cols=24  Identities=42%  Similarity=0.465  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..++|+|++|||||||++.|.+..
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            459999999999999999998754

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.94  E-value=0.00044  Score=57.36  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +++|+|++|||||||++.|.+..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.93  E-value=0.00041  Score=59.30  Aligned_cols=32  Identities=16%  Similarity=0.185  Sum_probs=23.3

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|||||||++.|.+..
T Consensus        16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34455556679999999999999999999865

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.87  E-value=0.00055  Score=59.39  Aligned_cols=32  Identities=28%  Similarity=0.368  Sum_probs=26.3

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|||||||++.|.|-.
T Consensus        24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            34455555679999999999999999999875

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.83  E-value=0.00059  Score=58.72  Aligned_cols=32  Identities=28%  Similarity=0.374  Sum_probs=26.4

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|||||||++.|.|-.
T Consensus        23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44455566679999999999999999999874

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.82  E-value=0.0007  Score=57.32  Aligned_cols=39  Identities=26%  Similarity=0.315  Sum_probs=28.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCCceeeccce
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLG  142 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~-i-~~~~~tT~~~~~~  142 (310)
                      -|+|+|++|||||||++.|.+..+. . .....+|..+..+
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~   50 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREG   50 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTT
T ss_pred             EEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCc
Confidence            4899999999999999999987542 2 3344455554443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.75  E-value=0.00076  Score=56.34  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=21.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..-|+|+|++|||||||++.|.+..
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            3458999999999999999999864

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.75  E-value=0.0036  Score=59.05  Aligned_cols=69  Identities=17%  Similarity=0.186  Sum_probs=38.0

Q ss_pred             ceEEEeCCCCCccccCCchHHHHH--HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~--~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .+.|+||||.....   ..+....  ...+-.+|.+++|+|+...  .+.+..+ ..+..   . . ...-+|+||+|..
T Consensus       182 DvVIIDTaG~l~~d---~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a-~~f~~---~-l-~i~GVIlTKlD~~  250 (425)
T 2ffh_A          182 DLILVDTAGRLQID---EPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVA-RAFDE---K-V-GVTGLVLTKLDGD  250 (425)
T ss_dssp             SEEEEECCCCSSCC---HHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHH-HHHHH---H-T-CCCEEEEESGGGC
T ss_pred             CEEEEcCCCccccc---HHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHH-HHHHh---c-C-CceEEEEeCcCCc
Confidence            68999999975431   2222221  1122358899999998753  2222222 22221   0 1 2356789999975


Q ss_pred             Cc
Q 021615          236 EA  237 (310)
Q Consensus       236 ~~  237 (310)
                      ..
T Consensus       251 ~~  252 (425)
T 2ffh_A          251 AR  252 (425)
T ss_dssp             SS
T ss_pred             cc
Confidence            43

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.74  E-value=0.0008  Score=59.13  Aligned_cols=33  Identities=24%  Similarity=0.259  Sum_probs=27.2

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...-.++|+|++|||||||++.|.|-.
T Consensus        25 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344555666679999999999999999999875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.73  E-value=0.0008  Score=58.43  Aligned_cols=33  Identities=30%  Similarity=0.364  Sum_probs=26.9

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...-.++|+|++|||||||++.|.+..
T Consensus        23 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           23 GITFSIPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344455566679999999999999999999874

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.73  E-value=0.00081  Score=59.81  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=27.3

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.++..-.++|+|++|||||||++.|.|-.
T Consensus        26 ~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           26 GINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            444556666679999999999999999999864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.73  E-value=0.00079  Score=57.59  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=27.1

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...-.++|+|++|||||||++.|.|..
T Consensus        27 ~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             EEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344555666679999999999999999999874

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.73  E-value=0.00084  Score=59.22  Aligned_cols=32  Identities=28%  Similarity=0.436  Sum_probs=26.5

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...--++|+|++|||||||++.|.|-.
T Consensus        25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44555566679999999999999999999874

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.72  E-value=0.00094  Score=58.12  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.+.. -.++|+|++|||||||++.|.|-.
T Consensus        16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence            344555666 679999999999999999999874

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.71  E-value=0.00084  Score=58.67  Aligned_cols=33  Identities=30%  Similarity=0.431  Sum_probs=27.5

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...-.++|+|++|||||||++.|.+-.
T Consensus        27 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           27 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344556666679999999999999999999874

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.71  E-value=0.00087  Score=57.86  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=27.1

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...-.++|+|++|||||||++.|.|..
T Consensus        26 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344555666679999999999999999999874

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.70  E-value=0.0007  Score=58.09  Aligned_cols=27  Identities=26%  Similarity=0.282  Sum_probs=23.0

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKP  127 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~  127 (310)
                      ..--++|+|++|||||||++.|.+..+
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            334589999999999999999998754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.69  E-value=0.00082  Score=59.45  Aligned_cols=33  Identities=33%  Similarity=0.360  Sum_probs=27.0

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...-.++|+|++|||||||++.|.|-.
T Consensus        29 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           29 DVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            344555566679999999999999999999875

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.69  E-value=0.00092  Score=59.02  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=27.2

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...-.++|+|++|||||||++.|.|-.
T Consensus        42 ~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            344556666679999999999999999999874

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.67  E-value=0.00093  Score=58.08  Aligned_cols=32  Identities=34%  Similarity=0.376  Sum_probs=26.4

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|||||||++.|.|-.
T Consensus        25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34455556679999999999999999999874

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.65  E-value=0.00099  Score=56.22  Aligned_cols=28  Identities=32%  Similarity=0.353  Sum_probs=23.0

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKP  127 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~  127 (310)
                      ...--++|+|++|||||||++.|.+..+
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3344589999999999999999998753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.64  E-value=0.001  Score=59.30  Aligned_cols=33  Identities=27%  Similarity=0.288  Sum_probs=27.3

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...-.++|+|++|||||||++.|.|..
T Consensus        39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           39 KISWQIAKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            344555666679999999999999999999875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.63  E-value=0.0011  Score=58.33  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=27.1

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...-.++|+|++|||||||++.|.|-.
T Consensus        33 ~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            344555666679999999999999999999874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.61  E-value=0.0011  Score=58.76  Aligned_cols=32  Identities=31%  Similarity=0.303  Sum_probs=26.5

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|||||||++.|.|-.
T Consensus        38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44455556679999999999999999999875

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.60  E-value=0.00097  Score=54.20  Aligned_cols=27  Identities=30%  Similarity=0.206  Sum_probs=23.3

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +..--++|+|+.|||||||++.|.+..
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            444569999999999999999999865

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.59  E-value=0.00083  Score=60.68  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=28.3

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.++..-.++|+|++|||||||++.|.+-.
T Consensus        71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             eeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            3455566677789999999999999999999864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.59  E-value=0.0011  Score=58.00  Aligned_cols=32  Identities=41%  Similarity=0.376  Sum_probs=26.4

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|||||||++.|.|..
T Consensus        19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34455566679999999999999999999874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.56  E-value=0.0012  Score=54.53  Aligned_cols=22  Identities=36%  Similarity=0.490  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+|+|++|||||||++.|.+.
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4899999999999999999975

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.56  E-value=0.0012  Score=59.51  Aligned_cols=31  Identities=26%  Similarity=0.315  Sum_probs=25.9

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +.+.++..-.++|+|++|+|||||++.|.+-
T Consensus       119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             HHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence            3455566678999999999999999999865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.53  E-value=0.0013  Score=57.99  Aligned_cols=32  Identities=25%  Similarity=0.301  Sum_probs=26.1

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|||||||++.|.|-.
T Consensus        26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34455555679999999999999999999875

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.50  E-value=0.00093  Score=56.22  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .-|+|+|++|||||||.+.|....
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            448999999999999999998654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.50  E-value=0.00086  Score=58.38  Aligned_cols=32  Identities=16%  Similarity=0.265  Sum_probs=26.3

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|||||||++.|.|-.
T Consensus        21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34455555679999999999999999999874

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.48  E-value=0.0015  Score=54.62  Aligned_cols=26  Identities=23%  Similarity=0.135  Sum_probs=22.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ....|+|+|++||||||+++.|.+.-
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34469999999999999999998864

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.48  E-value=0.0012  Score=55.84  Aligned_cols=23  Identities=43%  Similarity=0.560  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|+|++|||||||++.|.+.
T Consensus        23 ~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           23 QLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999999875

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.47  E-value=0.0011  Score=57.92  Aligned_cols=31  Identities=29%  Similarity=0.299  Sum_probs=25.9

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +.+.+...-.++|+|++|||||||++.|.|-
T Consensus        22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3445556667999999999999999999985

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.46  E-value=0.0012  Score=58.41  Aligned_cols=32  Identities=28%  Similarity=0.291  Sum_probs=26.5

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .+.+.+...-.++|+|++|||||||++.|.|-
T Consensus        38 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           38 GLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34455566667999999999999999999986

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.46  E-value=0.0017  Score=59.99  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=26.5

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...--++|+|++|||||||++.|.+-.
T Consensus        47 vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           47 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            44455556679999999999999999999875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.44  E-value=0.0011  Score=58.38  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=27.1

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...-.++|+|++|||||||++.|.+-.
T Consensus        38 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           38 SINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            344555666679999999999999999999864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.39  E-value=0.00094  Score=54.69  Aligned_cols=22  Identities=32%  Similarity=0.344  Sum_probs=18.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~  123 (310)
                      .--++++|++|||||||++.+.
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHS
T ss_pred             CEEEEEECCCCCCHHHHHHHHc
Confidence            3348999999999999999865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.38  E-value=0.0019  Score=59.54  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=26.9

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...--++|+|++|||||||++.|.|-.
T Consensus        22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             eeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            344555555669999999999999999999975

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.35  E-value=0.0013  Score=57.68  Aligned_cols=32  Identities=28%  Similarity=0.315  Sum_probs=26.3

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+...-.++|+|++|||||||++.|.|-.
T Consensus        24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34455555679999999999999999999875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.34  E-value=0.00087  Score=57.51  Aligned_cols=29  Identities=21%  Similarity=0.193  Sum_probs=18.2

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHH-cCC
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAIT-HAK  126 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~-~~~  126 (310)
                      .++...-++|+|++|||||||++.|. +..
T Consensus        23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            34445569999999999999999999 764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.34  E-value=0.002  Score=57.65  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=27.2

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...-.++|+|++|||||||++.|.|..
T Consensus        56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            344555666679999999999999999999874

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.29  E-value=0.0022  Score=52.01  Aligned_cols=23  Identities=35%  Similarity=0.408  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|+|++|||||||.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999999875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.28  E-value=0.0024  Score=58.84  Aligned_cols=33  Identities=30%  Similarity=0.464  Sum_probs=27.5

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...--++|+|++|||||||++.|.|-.
T Consensus        33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             eeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            445556666679999999999999999999875

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.28  E-value=0.0024  Score=58.86  Aligned_cols=33  Identities=21%  Similarity=0.249  Sum_probs=26.9

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...--++|+|++|||||||++.|.|-.
T Consensus        21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            344555556679999999999999999999875

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.28  E-value=0.0025  Score=59.22  Aligned_cols=33  Identities=33%  Similarity=0.341  Sum_probs=27.0

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...--++|+|++|||||||++.|.|-.
T Consensus        21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            344555556669999999999999999999875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.25  E-value=0.0026  Score=58.70  Aligned_cols=33  Identities=30%  Similarity=0.371  Sum_probs=27.1

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...--++|+|++|||||||++.|.|-.
T Consensus        21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eeEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            344555566679999999999999999999875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.23  E-value=0.0017  Score=57.31  Aligned_cols=32  Identities=31%  Similarity=0.397  Sum_probs=26.5

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+. .-.++|+|++|||||||++.|.|..
T Consensus        23 ~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           23 NINLEVN-GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            3445566 6679999999999999999999864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.22  E-value=0.0026  Score=53.18  Aligned_cols=31  Identities=29%  Similarity=0.294  Sum_probs=22.2

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +.+.+.....|+|+|++||||||+.+.|...
T Consensus        18 ~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           18 LYFQSNAMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             ------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3445556668999999999999999999753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.21  E-value=0.0028  Score=58.72  Aligned_cols=33  Identities=27%  Similarity=0.320  Sum_probs=27.0

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...--++|+|++|||||||++.|.|-.
T Consensus        29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            344555556679999999999999999999875

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.21  E-value=0.0022  Score=55.61  Aligned_cols=31  Identities=26%  Similarity=0.196  Sum_probs=23.0

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +.+.+....-|+|+|++|||||||++.|.+.
T Consensus        18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             -----CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4455556667999999999999999999874

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.20  E-value=0.0023  Score=52.81  Aligned_cols=21  Identities=24%  Similarity=0.186  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 021615          104 DVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~  124 (310)
                      -++|+|++|||||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            378999999999999999986

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.19  E-value=0.0022  Score=53.90  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+|+|++|||||||++.|.+.
T Consensus         8 ~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            8 VIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999999875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.18  E-value=0.0018  Score=55.11  Aligned_cols=26  Identities=23%  Similarity=0.082  Sum_probs=22.7

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...-.++|+|++|||||||++.|.+.
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            44456999999999999999999986

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.18  E-value=0.0029  Score=58.68  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=26.8

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...--++|+|++|||||||++.|.|-.
T Consensus        21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            344455555669999999999999999999875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.18  E-value=0.0029  Score=58.39  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=28.1

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.++..-.++|+|++|||||||++.|.+..
T Consensus       167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            345566777889999999999999999999864

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.14  E-value=0.017  Score=54.77  Aligned_cols=22  Identities=32%  Similarity=0.389  Sum_probs=18.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~  123 (310)
                      ..-|+|+|.+++|||+|+|.|+
T Consensus        67 v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           67 VVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCchhHHHHHHH
Confidence            4458899999999999999665

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.13  E-value=0.0025  Score=58.58  Aligned_cols=34  Identities=24%  Similarity=0.238  Sum_probs=27.4

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.+...--++|+|++|||||||++.|.|-.
T Consensus        17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            3444555566679999999999999999999875

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.12  E-value=0.0032  Score=51.95  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=21.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .+-++++|++|+|||||+++|.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            456899999999999999999864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.11  E-value=0.0026  Score=55.96  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -.++|+|++|||||||++.|.+.
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            35999999999999999999875

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.08  E-value=0.0029  Score=52.90  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .++++|++|+|||||++.|.+..
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            58999999999999999998753

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.07  E-value=0.0034  Score=52.48  Aligned_cols=23  Identities=22%  Similarity=0.476  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|+|++|||||||++.|.+.
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHh
Confidence            45999999999999999999864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.06  E-value=0.0029  Score=57.67  Aligned_cols=32  Identities=19%  Similarity=0.215  Sum_probs=27.2

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.++..-.++|+|++|||||||++.|.+.-
T Consensus       164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             hhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44556667789999999999999999999874

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.04  E-value=0.0022  Score=59.03  Aligned_cols=33  Identities=21%  Similarity=0.400  Sum_probs=26.8

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...--++|+|++|||||||++.|.|-.
T Consensus        23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             ceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            344455555679999999999999999999875

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.96  E-value=0.0021  Score=52.93  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|+|++|+|||||++.|.+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.95  E-value=0.0038  Score=54.01  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=19.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~  123 (310)
                      ..|+|+|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            469999999999999999999

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.93  E-value=0.0042  Score=52.65  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.92  E-value=0.0035  Score=53.07  Aligned_cols=23  Identities=22%  Similarity=0.231  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      --++|+|++|||||||++.|.+.
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            34899999999999999999874

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.89  E-value=0.0037  Score=56.49  Aligned_cols=25  Identities=28%  Similarity=0.294  Sum_probs=21.7

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...-|+|+|++|||||||++.|.+.
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhh
Confidence            3446999999999999999999875

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.87  E-value=0.0012  Score=62.97  Aligned_cols=105  Identities=15%  Similarity=0.014  Sum_probs=52.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCC-ceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch---HH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG---LG  178 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~-tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~---l~  178 (310)
                      ..|+++|.||+||||+.+.|...-.    +.+ .|...+...+.... .+ .  .....+||+.|..........   ..
T Consensus        40 ~~IvlvGlpGsGKSTia~~La~~l~----~~~~~t~~~~~d~~r~~~-~g-~--~~~~~ifd~~g~~~~r~re~~~~~~l  111 (469)
T 1bif_A           40 TLIVMVGLPARGKTYISKKLTRYLN----FIGVPTREFNVGQYRRDM-VK-T--YKSFEFFLPDNEEGLKIRKQCALAAL  111 (469)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH----HTTCCEEEEEHHHHHHHH-HC-S--CCCGGGGCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHh----ccCCCceEEecchhhhhh-cc-C--CCcccccCCCCHHHHHHHHHHHHHHH
Confidence            4699999999999999999975421    011 11111100000000 00 0  002345777775211000000   00


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhc
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY  216 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~  216 (310)
                      .....++..+++.++|+|+++. ..+....|.+.++..
T Consensus       112 ~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          112 NDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            0113344457888999999886 455556666666653

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.86  E-value=0.0042  Score=50.52  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+|+|++||||||+.+.|.+.
T Consensus        10 ~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A           10 IYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHh
Confidence            4899999999999999999764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.0042  Score=59.24  Aligned_cols=32  Identities=19%  Similarity=0.181  Sum_probs=27.2

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.++....|+|+|++|||||||++.|.+..
T Consensus       131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            45566677889999999999999999998753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.84  E-value=0.0043  Score=60.84  Aligned_cols=34  Identities=32%  Similarity=0.385  Sum_probs=28.8

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.++..-.++++|++|+|||||++.|.+-.
T Consensus       360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            3455667777789999999999999999999874

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.81  E-value=0.0038  Score=57.50  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=22.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+++|+|++|||||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            6689999999999999999999864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.79  E-value=0.0049  Score=51.50  Aligned_cols=22  Identities=36%  Similarity=0.523  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -|+|+|++|||||||.+.|.+.
T Consensus        27 ~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           27 VIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.78  E-value=0.0037  Score=58.33  Aligned_cols=34  Identities=32%  Similarity=0.432  Sum_probs=27.8

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.++..-.++|+|++|||||||++.|.|-.
T Consensus        38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             eceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            3445566666679999999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.78  E-value=0.0051  Score=51.32  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~  124 (310)
                      ..|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999999987

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.78  E-value=0.0049  Score=60.49  Aligned_cols=33  Identities=27%  Similarity=0.311  Sum_probs=27.9

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.++..-.++++|++|+|||||++.|.+-.
T Consensus       361 ~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             cceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            445566677789999999999999999999864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.74  E-value=0.0054  Score=49.33  Aligned_cols=22  Identities=27%  Similarity=0.141  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+|+|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.74  E-value=0.0055  Score=59.21  Aligned_cols=32  Identities=31%  Similarity=0.235  Sum_probs=26.4

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.++....++|+|++|||||||+++|++.-
T Consensus       253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             HHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            44455666679999999999999999999864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.69  E-value=0.0062  Score=48.86  Aligned_cols=19  Identities=26%  Similarity=0.545  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCcHHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAI  122 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L  122 (310)
                      -|+|+|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999999

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.64  E-value=0.005  Score=50.36  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=21.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...++++|++|+|||||++++.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999999865

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=95.58  E-value=0.0066  Score=50.74  Aligned_cols=21  Identities=38%  Similarity=0.463  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 021615          104 DVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~  124 (310)
                      .|+|+|++||||||+.+.|.+
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999986

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.58  E-value=0.0057  Score=56.35  Aligned_cols=22  Identities=41%  Similarity=0.366  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+|+|++|||||||+++|++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6999999999999999999864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.54  E-value=0.0049  Score=60.67  Aligned_cols=33  Identities=21%  Similarity=0.367  Sum_probs=27.8

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.++..-.++++|++|+|||||++.|.+-.
T Consensus       373 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          373 DITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             SEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             ceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            345566677789999999999999999999864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.54  E-value=0.0065  Score=50.69  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|+|.+||||||+.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999999764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.52  E-value=0.0042  Score=60.92  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=28.7

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.++..-.++++|++|+|||||++.|.+..
T Consensus       358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             eeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            4455666777789999999999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.49  E-value=0.0048  Score=55.81  Aligned_cols=25  Identities=40%  Similarity=0.495  Sum_probs=22.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ++-++|+|+.|||||||++.|.+..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4568999999999999999999763

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.49  E-value=0.0077  Score=48.81  Aligned_cols=21  Identities=29%  Similarity=0.359  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 021615          104 DVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~  124 (310)
                      -|+++|+|||||||+.+.|..
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            388999999999999999986

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.47  E-value=0.0079  Score=49.79  Aligned_cols=22  Identities=36%  Similarity=0.555  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+|+|.+||||||+.+.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5899999999999999999864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.45  E-value=0.0071  Score=50.63  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|+|.+|||||||.+.|.+.
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45999999999999999999976

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.45  E-value=0.0077  Score=49.30  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~  124 (310)
                      ..|+++|.+||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999975

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.43  E-value=0.009  Score=49.04  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .+.++++|++|+|||||+.+|...
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999999864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.40  E-value=0.007  Score=54.42  Aligned_cols=24  Identities=21%  Similarity=0.188  Sum_probs=21.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...|+|+|++|||||||++.|.+.
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999999874

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.38  E-value=0.0085  Score=49.35  Aligned_cols=25  Identities=20%  Similarity=0.392  Sum_probs=21.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ....|+|+|++||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3456999999999999999999865

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.36  E-value=0.0056  Score=49.01  Aligned_cols=24  Identities=33%  Similarity=0.257  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..++++|++|+|||||++++.+..
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999999998753

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.34  E-value=0.006  Score=59.97  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=28.6

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.++..-.++++|++|+|||||++.|.+-.
T Consensus       360 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            4455666777789999999999999999999864

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.32  E-value=0.0093  Score=52.11  Aligned_cols=30  Identities=20%  Similarity=0.212  Sum_probs=24.8

Q ss_pred             hhhhhhc---cCeEEEEcCCCCcHHHHHHHHHc
Q 021615           95 LELILRV---VADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus        95 ~~~~l~~---~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      +.+.++.   ...|+|+|++||||||+.+.|.+
T Consensus        38 ~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           38 KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred             hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3445555   67899999999999999999976

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.31  E-value=0.0077  Score=55.74  Aligned_cols=25  Identities=24%  Similarity=0.300  Sum_probs=21.6

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..-.|+|+|++|||||||++.|.+.
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3446999999999999999999874

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.31  E-value=0.0095  Score=48.34  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -|.++|+|||||||+.+.|...
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4889999999999999999864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.30  E-value=0.01  Score=49.92  Aligned_cols=22  Identities=41%  Similarity=0.632  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +|+|.|+|||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999653

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.29  E-value=0.01  Score=49.24  Aligned_cols=24  Identities=29%  Similarity=0.299  Sum_probs=21.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            356999999999999999999875

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.28  E-value=0.011  Score=51.45  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~  123 (310)
                      ...|+|+|++||||||+.+.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3469999999999999999998

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.24  E-value=0.011  Score=49.79  Aligned_cols=22  Identities=41%  Similarity=0.567  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +|+|+|+|||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999753

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.23  E-value=0.0089  Score=52.84  Aligned_cols=21  Identities=38%  Similarity=0.566  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 021615          105 VGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~  125 (310)
                      |+|+|+||+|||||+++|.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999975

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.23  E-value=0.0091  Score=49.96  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~  124 (310)
                      .-|+|+|++|+|||||++.|.+
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999999976

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.18  E-value=0.01  Score=48.53  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+|.|.+||||||+.+.|...
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.17  E-value=0.0091  Score=56.18  Aligned_cols=22  Identities=32%  Similarity=0.235  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -|+|+|++|||||||+++|++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999875

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.10  E-value=0.013  Score=47.85  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~  124 (310)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999975

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.09  E-value=0.011  Score=51.19  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -++|+|+||+|||||++++.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999999975

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.07  E-value=0.0082  Score=53.94  Aligned_cols=27  Identities=33%  Similarity=0.513  Sum_probs=22.4

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .+..--++++|++|||||||++.|.+.
T Consensus        97 ~~~g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A           97 FRKPAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             SSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            344456899999999999999999864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.06  E-value=0.011  Score=48.52  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-|.++|.|||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999753

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.05  E-value=0.012  Score=48.03  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -.+|+|++|+|||||+.+|...
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.04  E-value=0.014  Score=49.29  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=21.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...|+|+|.|||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            456999999999999999999753

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.02  E-value=0.014  Score=47.63  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=20.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...|+++|++|+||||+.+.|...
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHH
Confidence            456999999999999999999743

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.02  E-value=0.015  Score=47.85  Aligned_cols=26  Identities=27%  Similarity=0.326  Sum_probs=21.8

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +....|+|+|.+||||||+.+.|...
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            34457999999999999999999753

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.02  E-value=0.011  Score=53.55  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -|+|+|++|||||||++.|.+.
T Consensus        94 iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.01  E-value=0.015  Score=47.57  Aligned_cols=24  Identities=25%  Similarity=0.497  Sum_probs=20.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...|+++|++||||||+.+.|...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.92  E-value=0.012  Score=57.09  Aligned_cols=28  Identities=29%  Similarity=0.357  Sum_probs=23.8

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +...-.++|+|++|||||||++.|.|..
T Consensus        44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           44 VKEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444569999999999999999999964

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.92  E-value=0.013  Score=49.40  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      --++|+|++|+|||||++.|.+.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            34889999999999999999843

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=94.91  E-value=0.0072  Score=64.90  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=29.1

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+.++..-+|+|||++|||||||++.|.+--
T Consensus      1096 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A         1096 KGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred             cceeEEECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence            4566677778899999999999999999999753

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.90  E-value=0.11  Score=40.84  Aligned_cols=25  Identities=24%  Similarity=0.211  Sum_probs=21.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ....|.+.|+||+|||++..++...
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHh
Confidence            3346999999999999999999865

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.90  E-value=0.014  Score=47.31  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|+|+|||||||+.+.|...
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            36999999999999999999753

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.89  E-value=0.017  Score=46.39  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+|.|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999763

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.89  E-value=0.012  Score=57.28  Aligned_cols=23  Identities=26%  Similarity=0.445  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      -++|+|++|||||||++.|+|..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            38999999999999999999864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.86  E-value=0.011  Score=54.08  Aligned_cols=30  Identities=30%  Similarity=0.411  Sum_probs=25.2

Q ss_pred             hhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           97 LILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+...-+++|+|++|||||||++.|.+..
T Consensus        66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344555689999999999999999999874

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=94.84  E-value=0.0098  Score=50.91  Aligned_cols=23  Identities=26%  Similarity=0.235  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-|+|+|..|||||||++.|.+.
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            34899999999999999999875

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.84  E-value=0.086  Score=49.73  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-|++.|+||+|||+|.+++.+.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999999865

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.80  E-value=0.016  Score=48.77  Aligned_cols=22  Identities=36%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +|+|.|.|||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999753

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.80  E-value=0.0067  Score=50.82  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -|+|+|.+||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4889999999999999999754

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=94.79  E-value=0.017  Score=48.26  Aligned_cols=24  Identities=33%  Similarity=0.257  Sum_probs=21.0

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      ....|+|.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999999975

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=94.78  E-value=0.019  Score=47.37  Aligned_cols=26  Identities=23%  Similarity=0.333  Sum_probs=21.9

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +....|+|.|.+||||||+.+.|...
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            33456999999999999999999754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.77  E-value=0.014  Score=57.48  Aligned_cols=23  Identities=39%  Similarity=0.524  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .++|+|++|+|||||++.|.|..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999999875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.77  E-value=0.012  Score=56.40  Aligned_cols=29  Identities=31%  Similarity=0.252  Sum_probs=23.5

Q ss_pred             hhhhhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615           96 ELILRVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus        96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .+.+.. -.++|+|++|||||||++.|.+-
T Consensus        24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             EEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence            344444 56899999999999999999874

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=94.74  E-value=0.017  Score=48.10  Aligned_cols=23  Identities=17%  Similarity=0.289  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|.|.+||||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            45899999999999999999764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=94.74  E-value=0.015  Score=51.13  Aligned_cols=23  Identities=39%  Similarity=0.528  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      -|+|+|++|+|||||+++|.+..
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCcChHHHHHHHHHHHc
Confidence            48999999999999999999753

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.73  E-value=0.017  Score=48.16  Aligned_cols=24  Identities=25%  Similarity=0.185  Sum_probs=20.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...|+|.|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            346999999999999999999753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.73  E-value=0.018  Score=48.95  Aligned_cols=24  Identities=29%  Similarity=0.477  Sum_probs=20.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...|+|+|.+||||||+.+.|...
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            356999999999999999999753

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=94.71  E-value=0.016  Score=47.48  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-|+++|.+||||||+.+.|...
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            34899999999999999999754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.69  E-value=0.015  Score=51.67  Aligned_cols=26  Identities=19%  Similarity=0.089  Sum_probs=21.7

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...--++|+|+||+|||||++.|.+.
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            33445899999999999999998864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=94.67  E-value=0.017  Score=47.04  Aligned_cols=22  Identities=41%  Similarity=0.505  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+|+|.+||||||+.+.|.+.
T Consensus         7 ~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            7 TVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999763

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=94.65  E-value=0.016  Score=62.33  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=29.5

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+.++..-.+++||++|+|||||++.|.+.-
T Consensus       435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~  468 (1321)
T 4f4c_A          435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY  468 (1321)
T ss_dssp             EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred             eceEEeecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence            4566677788899999999999999999999864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.64  E-value=0.23  Score=44.67  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-|.|.|+||+|||+|.+++.+.
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            45899999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=94.63  E-value=0.016  Score=52.61  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..++++|+||+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999875

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.62  E-value=0.017  Score=51.62  Aligned_cols=23  Identities=22%  Similarity=0.099  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|+|++|||||||.+.|.+.
T Consensus        32 ~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           32 LFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999988753

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=94.59  E-value=0.013  Score=54.02  Aligned_cols=26  Identities=35%  Similarity=0.507  Sum_probs=21.9

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...--|+++|++|||||||++.|.+.
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence            34446899999999999999999864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=94.56  E-value=0.02  Score=46.87  Aligned_cols=22  Identities=41%  Similarity=0.409  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+|.|.|||||||+.+.|...
T Consensus         5 ~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            5 VVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=94.55  E-value=0.022  Score=46.64  Aligned_cols=21  Identities=19%  Similarity=0.341  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 021615          104 DVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~  124 (310)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999975

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=94.54  E-value=0.019  Score=53.19  Aligned_cols=26  Identities=27%  Similarity=0.165  Sum_probs=22.1

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +...-++++|++|+|||||++.|.+.
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34456999999999999999999864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.52  E-value=0.14  Score=48.12  Aligned_cols=22  Identities=36%  Similarity=0.597  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -|++.|+||+|||+|.+++.+.
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.49  E-value=0.016  Score=54.75  Aligned_cols=30  Identities=27%  Similarity=0.325  Sum_probs=25.2

Q ss_pred             hhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           97 LILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+...-.++|+|++|+|||||++.|.+..
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            344555689999999999999999999864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.48  E-value=0.021  Score=48.33  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|+|++||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999754

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=94.46  E-value=0.021  Score=49.88  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-|+++|.|||||||+.+.|...
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            45899999999999999999753

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.45  E-value=0.024  Score=47.10  Aligned_cols=23  Identities=35%  Similarity=0.458  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|+|.|||||||+.+.|...
T Consensus        21 ~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           21 MRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999999753

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.45  E-value=0.022  Score=46.50  Aligned_cols=22  Identities=41%  Similarity=0.613  Sum_probs=19.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~  124 (310)
                      +.|+|+|.|||||||+-+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999999875

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.39  E-value=0.022  Score=49.26  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=21.6

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ....|+|.|+|||||||+.+.|...
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4457999999999999999999753

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=94.36  E-value=0.021  Score=48.54  Aligned_cols=24  Identities=13%  Similarity=0.160  Sum_probs=21.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .--++|+|++|+|||||+..|.+.
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            345899999999999999999973

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=94.36  E-value=0.018  Score=61.69  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=29.1

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.++..-.+++||++|||||||++.|.+..
T Consensus       407 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~  440 (1284)
T 3g5u_A          407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY  440 (1284)
T ss_dssp             EEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred             ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4556677777889999999999999999999864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=94.34  E-value=0.025  Score=45.13  Aligned_cols=19  Identities=42%  Similarity=0.548  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 021615          105 VGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~  123 (310)
                      .+|+|+.|+|||||+.+|.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6799999999999999985

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.33  E-value=0.022  Score=47.97  Aligned_cols=22  Identities=36%  Similarity=0.338  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~  124 (310)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999976

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.32  E-value=0.026  Score=45.42  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|.|.+||||||+.+.|...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.32  E-value=0.028  Score=47.48  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|+|.|||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            56999999999999999999753

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=94.30  E-value=0.024  Score=47.56  Aligned_cols=26  Identities=35%  Similarity=0.460  Sum_probs=21.6

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ....-|+++|.+||||||+.+.|.+.
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            34456899999999999999999754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.28  E-value=0.023  Score=46.94  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|+|.+||||||+.+.|...
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC
Confidence            35999999999999999999875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.28  E-value=0.027  Score=47.88  Aligned_cols=22  Identities=18%  Similarity=0.261  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+|.|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.27  E-value=0.019  Score=55.78  Aligned_cols=27  Identities=22%  Similarity=0.415  Sum_probs=23.7

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +..-.++|+|+.|+|||||++.|+|..
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345579999999999999999999975

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=94.26  E-value=0.023  Score=52.37  Aligned_cols=19  Identities=42%  Similarity=0.531  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 021615          105 VGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~  123 (310)
                      .+|+|++|||||||+++++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6799999999999999987

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.26  E-value=0.027  Score=47.59  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +.|.|+|+|||||+|.-..|...
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.26  E-value=0.022  Score=56.21  Aligned_cols=28  Identities=25%  Similarity=0.337  Sum_probs=23.8

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +...-.++|+|++|+|||||++.|.|..
T Consensus       114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          114 VKDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            3444569999999999999999999864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.24  E-value=0.021  Score=50.71  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-|+|+|+|||||||+.+.|...
T Consensus        34 ~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            34889999999999999999754

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=94.23  E-value=0.023  Score=49.43  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -|+|+|++|||||||-+.|...
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            3789999999999999999754

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=94.21  E-value=0.026  Score=46.82  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|.|.+||||||+.+.|...
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999854

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=94.19  E-value=0.025  Score=60.57  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=28.7

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+.++..-+|+|+|++|+|||||++.|.+-.
T Consensus      1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A         1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp             SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            3455666777789999999999999999999864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.18  E-value=0.025  Score=45.57  Aligned_cols=23  Identities=22%  Similarity=0.534  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..+.|.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999998764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=94.14  E-value=0.026  Score=46.07  Aligned_cols=22  Identities=36%  Similarity=0.398  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+|.|.+||||||+.+.|...
T Consensus         8 ~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            8 VVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.11  E-value=0.019  Score=55.74  Aligned_cols=27  Identities=19%  Similarity=0.292  Sum_probs=23.5

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +..-.++|+|++|||||||++.|+|..
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345568999999999999999999875

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=94.09  E-value=0.029  Score=46.92  Aligned_cols=22  Identities=23%  Similarity=0.144  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~  124 (310)
                      --++++|++|+|||||+..|.+
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999987

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.09  E-value=0.016  Score=59.97  Aligned_cols=34  Identities=24%  Similarity=0.411  Sum_probs=29.1

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.+...-.++|+|++|||||||++.|+|..
T Consensus       690 ~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          690 TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred             eccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4455667777789999999999999999999875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.01  E-value=0.023  Score=56.04  Aligned_cols=27  Identities=26%  Similarity=0.439  Sum_probs=23.5

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +..-.++|+|++|+|||||++.|.|..
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345578999999999999999999975

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=93.99  E-value=0.18  Score=47.16  Aligned_cols=23  Identities=39%  Similarity=0.481  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-|+++|+|||||||+.+.|...
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            34889999999999999999864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.89  E-value=0.024  Score=46.01  Aligned_cols=23  Identities=13%  Similarity=0.115  Sum_probs=16.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|.|.+||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999999753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=93.86  E-value=0.03  Score=55.23  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKP  127 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~  127 (310)
                      .++|+|++|+|||||++.|.|...
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            489999999999999999999753

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=93.80  E-value=0.036  Score=47.91  Aligned_cols=24  Identities=38%  Similarity=0.473  Sum_probs=21.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...|+|+|+||+|||||.+++.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            345999999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=93.75  E-value=0.04  Score=47.03  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|+|.+||||||+.+.|...
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            56999999999999999999754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=93.73  E-value=0.032  Score=47.83  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..-|++.|++||||||+++.|...
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            345899999999999999999865

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=93.63  E-value=0.023  Score=49.38  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+++|+|||||||+.+.|...
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999999864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=93.61  E-value=0.0064  Score=52.39  Aligned_cols=22  Identities=45%  Similarity=0.422  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 021615          105 VGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ++|+|++|||||||+++|.+..
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            5789999999999999998753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=93.60  E-value=0.026  Score=58.45  Aligned_cols=31  Identities=35%  Similarity=0.516  Sum_probs=25.7

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +.+.+...-.++|+|++|+|||||++.|.+.
T Consensus       454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG  484 (986)
T 2iw3_A          454 TQLRLKRARRYGICGPNGCGKSTLMRAIANG  484 (986)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3445566667999999999999999999964

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=93.59  E-value=0.044  Score=43.99  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -.|+|.|.+||||||+-+.|...
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=93.52  E-value=0.047  Score=47.12  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      ...|+|.|++|+||||+.+.|..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999999974

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=93.47  E-value=0.011  Score=55.02  Aligned_cols=29  Identities=34%  Similarity=0.322  Sum_probs=23.4

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHc
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      +.+.+... .++|+|++|||||||+++|..
T Consensus        54 v~l~~~~G-~~~lvG~NGaGKStLl~aI~~   82 (415)
T 4aby_A           54 LELELGGG-FCAFTGETGAGKSIIVDALGL   82 (415)
T ss_dssp             EEEECCSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred             EEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence            34455566 799999999999999998853

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=93.39  E-value=0.038  Score=48.57  Aligned_cols=26  Identities=27%  Similarity=0.189  Sum_probs=21.7

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHc
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      +...--++|+|++|+|||||+..|.+
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            33445689999999999999999885

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=93.39  E-value=0.041  Score=47.62  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~  124 (310)
                      ..|+|.|.+||||||+.+.|..
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999976

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=93.35  E-value=0.044  Score=46.41  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .+++.|+||+||||+..+|...
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999998888753

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=93.30  E-value=0.043  Score=46.23  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=20.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...+.|.|++|+|||||++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456999999999999999998753

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=93.30  E-value=0.048  Score=46.59  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      ....|+|+|.+|+||||+.+.|.+
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999999986

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=93.24  E-value=0.045  Score=45.28  Aligned_cols=23  Identities=39%  Similarity=0.417  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|.|.|++|+|||+|+.++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999998864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=93.17  E-value=0.053  Score=46.20  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=20.5

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +...-|.|+|+|||||+|....|...
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            33334678999999999999999754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=93.16  E-value=0.035  Score=44.68  Aligned_cols=24  Identities=21%  Similarity=0.393  Sum_probs=20.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...|.|.|++|+|||+|+..+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998754

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=93.10  E-value=0.049  Score=45.40  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|+|.+||||||+.+.|...
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            34999999999999999999754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=93.07  E-value=0.035  Score=54.01  Aligned_cols=25  Identities=40%  Similarity=0.375  Sum_probs=21.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ....|+|+|++|||||||.+.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            4456999999999999999999875

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.05  E-value=0.39  Score=45.13  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-|.+.|+||+|||+|.+++.+.
T Consensus       217 rGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             SEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCceECCCCchHHHHHHHHHHH
Confidence            45999999999999999999875

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=92.97  E-value=0.023  Score=56.66  Aligned_cols=29  Identities=24%  Similarity=0.415  Sum_probs=23.2

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHH
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~  123 (310)
                      +.+.+...-.++|+|++|||||||++.++
T Consensus       341 vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          341 VSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             EEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             ceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            44555566679999999999999998654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=92.97  E-value=0.053  Score=47.92  Aligned_cols=21  Identities=29%  Similarity=0.359  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 021615          104 DVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~  124 (310)
                      -|.++|.|||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999986

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=92.93  E-value=0.058  Score=45.24  Aligned_cols=19  Identities=42%  Similarity=0.548  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 021615          105 VGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~  123 (310)
                      .+|+|+.|+|||||+.+|.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            6789999999999999884

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.93  E-value=0.55  Score=43.73  Aligned_cols=23  Identities=39%  Similarity=0.550  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-|.+.|+||+|||+|..++.+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh
Confidence            45999999999999999999865

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=92.89  E-value=0.055  Score=44.79  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+|.|.+||||||+.+.|...
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999999763

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.88  E-value=0.34  Score=45.92  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..-|+|.|+||+|||+|.+++.+.
T Consensus       243 prGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          243 PKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCceEeeCCCCCcHHHHHHHHHhc
Confidence            346999999999999999999864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=92.76  E-value=0.056  Score=47.79  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=19.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~  124 (310)
                      ..|+|.|.+||||||+.+.|..
T Consensus        76 ~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4599999999999999999973

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=92.62  E-value=0.074  Score=45.74  Aligned_cols=23  Identities=35%  Similarity=0.426  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ++++|+|+|||||||+...|...
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~   31 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEK   31 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=92.60  E-value=0.062  Score=44.84  Aligned_cols=22  Identities=14%  Similarity=0.262  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -++|.|++|+|||||+..+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999998753

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=92.52  E-value=0.061  Score=49.51  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=20.8

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHH
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAI  122 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L  122 (310)
                      .+...||+|+|.+++|||||+..+
T Consensus        30 ~~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           30 SARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             hcCccEEEEECCCCCcHHHHHHHH
Confidence            355678999999999999999886

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.52  E-value=0.056  Score=48.80  Aligned_cols=23  Identities=26%  Similarity=0.284  Sum_probs=20.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      .+.+++.|++|+|||||++.|.+
T Consensus        36 ~~~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           36 LPHLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34599999999999999999987

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=92.45  E-value=0.063  Score=47.30  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|.|.|+||+|||||.+++.+.
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999999999999874

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=92.41  E-value=0.069  Score=45.31  Aligned_cols=21  Identities=29%  Similarity=0.311  Sum_probs=17.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~  123 (310)
                      --++|+|+||+|||||...+.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           24 NVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            348899999999999977665

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=92.38  E-value=0.48  Score=43.56  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|.|+||+|||+|..++...
T Consensus       149 ~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          149 RGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHh
Confidence            57999999999999999999764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=92.37  E-value=0.076  Score=44.73  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .-|+|+|++|+|||||...|...-
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            348999999999999999998653

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=92.34  E-value=0.073  Score=46.52  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=21.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ....+.|.|+||+|||+|.+++.+.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3456999999999999999999865

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=92.31  E-value=0.072  Score=43.91  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..+.|.|++|+|||+|+..+...
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999998753

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=92.31  E-value=0.064  Score=49.03  Aligned_cols=26  Identities=19%  Similarity=0.164  Sum_probs=22.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ...-++|+|++|+|||||+..|.+..
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34468999999999999999998753

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=92.29  E-value=0.4  Score=45.11  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-|+|.|+||+|||+|..++...
T Consensus       168 ~~vLL~GppGtGKT~lA~aia~~  190 (444)
T 2zan_A          168 RGILLFGPPGTGKSYLAKAVATE  190 (444)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999864

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=92.20  E-value=0.3  Score=46.17  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=21.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ....+.|.|+||+|||||.+.|.+.
T Consensus        49 ~~~~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           49 HLHSMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHH
Confidence            3357999999999999999999865

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=92.18  E-value=0.079  Score=47.11  Aligned_cols=24  Identities=33%  Similarity=0.445  Sum_probs=21.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..-|+|.|+||+|||+|.+++.+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            345999999999999999999875

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=92.07  E-value=0.083  Score=48.07  Aligned_cols=22  Identities=27%  Similarity=0.441  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .++|.|++|+|||||++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999865

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=92.06  E-value=0.086  Score=45.26  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..-|.|.|+||+|||+|.+++...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            345899999999999999999864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.94  E-value=0.094  Score=47.35  Aligned_cols=24  Identities=21%  Similarity=0.480  Sum_probs=21.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .+.+++.|++|+||||+++.+.+.
T Consensus        46 ~~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           46 LPHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            345899999999999999999865

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.90  E-value=0.099  Score=46.97  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..+.+.|+||+||||+++++.+.
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            56999999999999999999764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=91.90  E-value=0.072  Score=51.38  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=20.1

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHH
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAI  122 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L  122 (310)
                      +...--++|+|++|||||||++.|
T Consensus        36 i~~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           36 LPIGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCCCeEEEEEcCCCCCHHHHHHHH
Confidence            344556999999999999999994

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=91.90  E-value=0.078  Score=48.02  Aligned_cols=24  Identities=17%  Similarity=0.354  Sum_probs=20.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..-++|.|++|+|||||++.+.+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999864

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=91.85  E-value=0.081  Score=47.34  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..+.|.|+||+|||||++++.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45999999999999999999864

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=91.76  E-value=0.092  Score=47.64  Aligned_cols=19  Identities=42%  Similarity=0.548  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 021615          105 VGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~  123 (310)
                      .+|+|++|+|||||+.+++
T Consensus        26 ~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           26 NLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5799999999999999974

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=91.64  E-value=0.07  Score=48.04  Aligned_cols=20  Identities=35%  Similarity=0.551  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~  123 (310)
                      -.+|+|++|+|||||+.+|.
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHH
Confidence            47899999999999999997

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=91.62  E-value=0.089  Score=46.68  Aligned_cols=22  Identities=23%  Similarity=0.202  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -+.+.|+||+|||+|..++...
T Consensus        38 ~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           38 ILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4677799999999999999864

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=91.43  E-value=0.094  Score=49.15  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -++|+|++|+|||||+.++...
T Consensus        28 ~~~i~G~nG~GKstll~ai~~~   49 (430)
T 1w1w_A           28 FTSIIGPNGSGKSNMMDAISFV   49 (430)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999753

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=91.36  E-value=0.079  Score=47.34  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=21.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..-++|.|++|+|||||++.+...
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHH
Confidence            356899999999999999999865

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=91.32  E-value=0.091  Score=50.58  Aligned_cols=28  Identities=18%  Similarity=0.158  Sum_probs=24.0

Q ss_pred             hhhhccCeEEEEcCCCCcHHHHHHHHHc
Q 021615           97 LILRVVADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus        97 ~~l~~~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      +.+...+.++|+|.+|+|||++++.|..
T Consensus       162 ldL~~~pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          162 ADLAKMPHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred             EEcccCceEEEECCCCCCHHHHHHHHHH
Confidence            3445688999999999999999999864

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=91.27  E-value=0.13  Score=47.18  Aligned_cols=22  Identities=41%  Similarity=0.552  Sum_probs=19.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~  124 (310)
                      +.|+|+|++|+||||+...|.+
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4599999999999999998865

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=91.14  E-value=0.12  Score=45.62  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=19.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|.|.|+||+|||+|.+++...
T Consensus        68 ~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999877643

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=91.13  E-value=0.11  Score=45.88  Aligned_cols=22  Identities=18%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .++++|+||+|||++.++|.+.
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHHH
Confidence            5899999999999999999764

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=91.08  E-value=0.12  Score=47.51  Aligned_cols=21  Identities=38%  Similarity=0.457  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 021615          104 DVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~  124 (310)
                      -++++|+.|+|||||++++..
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            478999999999999999974

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=91.08  E-value=0.1  Score=50.05  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -|+|+|+||+|||||++++.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999875

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=91.04  E-value=0.12  Score=47.09  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -|+|+|++|||||||...|...
T Consensus         9 lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCcHHHHHHHHHHH
Confidence            4899999999999999999764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=90.94  E-value=0.12  Score=46.76  Aligned_cols=22  Identities=36%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|+|+|++|||||||-..|...
T Consensus         7 ~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999864

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=90.88  E-value=0.14  Score=50.20  Aligned_cols=33  Identities=27%  Similarity=0.289  Sum_probs=27.4

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+.....++|+|++|+|||||+++|.+.-
T Consensus        52 ~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l   84 (604)
T 3k1j_A           52 VIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL   84 (604)
T ss_dssp             HHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred             hccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence            345556666789999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	310
d1jala1	278	c.37.1.8 (A:1-278) YchF GTP-binding protein N-term	7e-34
d1wxqa1	319	c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr	5e-30
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	1e-28
d1ni3a1	296	c.37.1.8 (A:11-306) YchF GTP-binding protein N-ter	4e-27
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	8e-26
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	5e-14
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	2e-12
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-10
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	6e-09
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	3e-08
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	4e-08
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	2e-06
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	4e-06
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	4e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	6e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	2e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	2e-05
d1g7sa4	227	c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-	1e-04
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-04
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	6e-04
d1udxa1	156	b.117.1.1 (A:1-156) Obg GTP-binding protein N-term	0.002
d1lnza1	157	b.117.1.1 (A:1-157) Obg GTP-binding protein N-term	0.002
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.002
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.004

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 278

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

 Score =  123 bits (309), Expect = 7e-34
 Identities = 51/138 (36%), Positives = 70/138 (50%), Gaps = 19/138 (13%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD-GDPTLG--AEKYSSEAT- 160
            G+VGLPN GKSTL  A+T A  + A+YPF T+ PN G +   DP L   AE    E   
Sbjct: 5   CGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64

Query: 161 -----LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVND 205
                  D+ GL+ GA  G+GLG  FL ++R T  + HV+               +P++D
Sbjct: 65  PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDD 124

Query: 206 YRTVKEELRMYNPDYLER 223
             T+  EL + + D  ER
Sbjct: 125 IDTINTELALADLDSCER 142

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  113 bits (284), Expect = 5e-30
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 27/162 (16%)

Query: 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSS------ 157
           ++G+VG PN GKST  +A T    +IA+YPFTT+  N+G          ++         
Sbjct: 2   EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61

Query: 158 ----------EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------- 199
                        + D+ GL+ GAH G+GLG  FL  LR    L+HV+DA          
Sbjct: 62  YEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQP 121

Query: 200 ---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR 238
               +PV D   ++ E+  +    L + +     +I L + +
Sbjct: 122 TDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIK 163

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score =  106 bits (265), Expect = 1e-28
 Identities = 75/150 (50%), Positives = 97/150 (64%), Gaps = 10/150 (6%)

Query: 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 161
           +ADVGLVG P+ GKSTLL+ ++ AKP IADY FTTL+PNLG                  +
Sbjct: 1   LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGM-------VETDDGRSFVM 53

Query: 162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR---TVKEELRMYNP 218
           ADLPGLIEGAH G GLG  FLRH+ RTR++VHVID +     + Y    T+ +EL  YN 
Sbjct: 54  ADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL 113

Query: 219 DYLERPFIVVLNKIDLPEARDRLQSLTEEI 248
              ERP I+V NK+D+PEA + L++  E++
Sbjct: 114 RLTERPQIIVANKMDMPEAAENLEAFKEKL 143

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  105 bits (263), Expect = 4e-27
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 20/148 (13%)

Query: 105 VGLVGLPNAGKSTLLAAITHA-KPDIADYPFTTLMPNLG-------RLD--GDPTLGAEK 154
            G+VG+PN GKST   AIT +   + A+YP+ T+ P          R D   +      +
Sbjct: 13  TGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSR 72

Query: 155 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVN 204
             +  T+ D+ GL +GA  G GLG  FL H+R    +  V+ A  +          +P+ 
Sbjct: 73  VPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIR 132

Query: 205 DYRTVKEELRMYNPDYLERPFIVVLNKI 232
           D   + +EL + + +++E+    +    
Sbjct: 133 DLSIIVDELLIKDAEFVEKHLEGLRKIT 160

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 99.0 bits (245), Expect = 8e-26
 Identities = 76/155 (49%), Positives = 105/155 (67%), Gaps = 9/155 (5%)

Query: 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 161
           +ADVGLVG PNAGKS+LLAA+T A P IA YPFTTL PNLG ++              TL
Sbjct: 1   IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE-------VSEEERFTL 53

Query: 162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYL 221
           AD+PG+IEGA  GKGLG  FLRH+ RTR+L++V+D AA+ P+    T+++E+  Y+P  L
Sbjct: 54  ADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLD-AADEPLKTLETLRKEVGAYDPALL 112

Query: 222 ERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKV 256
            RP +V LNK+DL E  + +++L + + + G   +
Sbjct: 113 RRPSLVALNKVDLLE-EEAVKALADALAREGLAVL 146

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.3 bits (163), Expect = 5e-14
 Identities = 33/210 (15%), Positives = 67/210 (31%), Gaps = 31/210 (14%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164
           V  VGL ++GK+ L   +   +        T++  +              Y       + 
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQYRDT---QTSITDSSA-----------IYKVNNNRGNS 48

Query: 165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER- 223
             LI+         +   R     R +V V+D  +     + + V E L     D +   
Sbjct: 49  LTLIDLPGHESLRFQLLDRFKSSARAVVFVVD--SAAFQREVKDVAEFLYQVLIDSMALK 106

Query: 224 ---PFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGGEADL 280
                ++  NK D+  A+       + I +        E EL++    +S +    ++  
Sbjct: 107 NSPSLLIACNKQDIAMAKS-----AKLIQQQ------LEKELNTLRVTRSAAPSTLDSSS 155

Query: 281 LSSVTSVKDKRDKEIEDYPRPLAVVGVSVL 310
            +     K  ++ E    P  +  +  S  
Sbjct: 156 TAPAQLGKKGKEFEFSQLPLKVEFLECSAK 185

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 62.8 bits (151), Expect = 2e-12
 Identities = 26/157 (16%), Positives = 48/157 (30%), Gaps = 5/157 (3%)

Query: 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 162
           A +   G  N GKSTL+  +T  K      P  T             +    +     L 
Sbjct: 1   ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLP 60

Query: 163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYL- 221
                     +                +LV    AA E      +  +  + +    +L 
Sbjct: 61  KEVQERIKDEIVH--FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR 118

Query: 222 --ERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKV 256
             + P IV +NK+D  +    + +   E  ++   ++
Sbjct: 119 ELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEI 155

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164
           + +VG PN GKSTLL  + +    I      T    +        +      +    ++ 
Sbjct: 3   MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 62

Query: 165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP 218
             L+E   +        L+ + +  +++ V+DA++     D + ++        
Sbjct: 63  NDLVERLGI-----ERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYL 111

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.1 bits (126), Expect = 6e-09
 Identities = 31/196 (15%), Positives = 62/196 (31%), Gaps = 20/196 (10%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164
           + + G  N+GK++LL  +T         P       L   D D            +   L
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDG-----------SGVTL 50

Query: 165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLER 223
                   L   L        +  + L+ ++D+      +        ++        E 
Sbjct: 51  VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN 110

Query: 224 --PFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGGEADLL 281
               ++  NK +L  AR    S  ++ L+    KV    + S  +  + ++ E    + L
Sbjct: 111 GIDILIACNKSELFTARPP--SKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL 168

Query: 282 SSVTSVKDKRDKEIED 297
             + S    +   +E 
Sbjct: 169 DVLQSTDGFKFANLEA 184

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 50.5 bits (119), Expect = 3e-08
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPN 140
           A V +VG PN GKSTL   +   K  I  D    T  P 
Sbjct: 1   ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPV 39

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 50.1 bits (118), Expect = 4e-08
 Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 12/138 (8%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164
           + +VG PN GKSTLL  +   K  I      T    +  +  +          +A   D 
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-------YQAIYVDT 60

Query: 165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP 224
           PGL            N         + + +          D   V  +LR         P
Sbjct: 61  PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKA-----P 115

Query: 225 FIVVLNKIDLPEARDRLQ 242
            I+ +NK+D  + +  L 
Sbjct: 116 VILAVNKVDNVQEKADLL 133

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL 141
           V + G PNAGKS+LL A+   +  I      T    L
Sbjct: 4   VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 40

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 44.3 bits (103), Expect = 4e-06
 Identities = 13/36 (36%), Positives = 15/36 (41%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN 140
           V +VG PN GKSTLL  +   K         T    
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKR 43

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 7/136 (5%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163
           + ++G    GKS+ + +I   +    + +      P +       +      +   T   
Sbjct: 35  ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR----SRAGFTLNIIDTPGL 90

Query: 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER 223
           + G          +    L       L V  +DA   +   D    K     +       
Sbjct: 91  IEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDN-LDKLVAKAITDSFGKGIW-N 148

Query: 224 PFIVVLNKIDLPEARD 239
             IV L          
Sbjct: 149 KAIVALTHAQFSPPDG 164

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (106), Expect = 6e-06
 Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 17/157 (10%)

Query: 94  SLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAE 153
           +L+ I   V +V + G   +GKS+ +  +     +            +  +  +      
Sbjct: 48  ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEG----AAKTGVVEVTMERHPYKH 103

Query: 154 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEEL 213
                    DLPG+             +L  ++       +I +A     ND    K   
Sbjct: 104 PNIPNVVFWDLPGIGSTNF----PPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAIS 159

Query: 214 RMYNPDYLERPFIVVLNKIDL---PEARDRLQSLTEE 247
            M      ++ F  V  K+D     EA    Q+  +E
Sbjct: 160 MM------KKEFYFVRTKVDSDITNEADGEPQTFDKE 190

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 19/150 (12%), Positives = 41/150 (27%), Gaps = 6/150 (4%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164
           V   G  NAGKS+ L  +T+ K              +   +               L   
Sbjct: 19  VAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA------DGKRLVDLPGY 72

Query: 165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP 224
                   + +   R    +L + + L  ++              +      + +     
Sbjct: 73  GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV 132

Query: 225 FIVVLNKIDLPEARDRLQSLTEEILKIGCD 254
            +   +K+     + +L  + E +L    D
Sbjct: 133 LLTKADKLASGARKAQLNMVREAVLAFNGD 162

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPN 140
           V +VG PN GKSTL  AI + +  + +  P TT  P 
Sbjct: 11  VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPV 47

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 32/211 (15%), Positives = 66/211 (31%), Gaps = 27/211 (12%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164
           V ++G  + GK+TLL  I  +     +    T   ++G  +    +             +
Sbjct: 8   VSVLGHVDHGKTTLLDHIRGSAVASREAGGIT--QHIGATEIPMDVIEGICGDFLKKFSI 65

Query: 165 PGLIEGAHLGKGLG-----RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD 219
              + G       G         R      L + ++D                  +    
Sbjct: 66  RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQE------ALNILR 119

Query: 220 YLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSE--DAVKSLSTEGGE 277
               PF+V  NKID      R+      +       +  + +L ++  + V  L  EG E
Sbjct: 120 MYRTPFVVAANKIDRIHG-WRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFE 178

Query: 278 ADLLSSVTSVKDKRDKEIEDYPRPLAVVGVS 308
           ++           R   + D+   ++++ +S
Sbjct: 179 SE-----------RFDRVTDFASQVSIIPIS 198

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 27/150 (18%), Positives = 45/150 (30%), Gaps = 37/150 (24%)

Query: 98  ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG---------RLDGDP 148
           + +VV    L+G    GKS LL+  T  + ++       +              +     
Sbjct: 4   LFKVV----LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 59

Query: 149 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRT 208
           T G E+Y    +                       + R     + V D A      +   
Sbjct: 60  TAGQERYRRITSA----------------------YYRGAVGALLVYDIAKHLTYENVER 97

Query: 209 VKEELRMYNPDYLERPFIVVLNKIDLPEAR 238
             +ELR +         ++V NK DL   R
Sbjct: 98  WLKELRDHADS--NIVIMLVGNKSDLRHLR 125

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.2 bits (87), Expect = 6e-04
 Identities = 23/188 (12%), Positives = 47/188 (25%), Gaps = 20/188 (10%)

Query: 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164
           + L G  N GKS+ + ++ + K              L     +  L            D+
Sbjct: 26  IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDEL---------HFVDV 76

Query: 165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP 224
           PG                           +        +    +  +        Y   P
Sbjct: 77  PGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP 136

Query: 225 FIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGGE--ADLLS 282
            IV+  K D        +             V     +  ED +   S+E  +   +   
Sbjct: 137 VIVIATKADKIPKGKWDKHA---------KVVRQTLNIDPEDELILFSSETKKGKDEAWG 187

Query: 283 SVTSVKDK 290
           ++  + ++
Sbjct: 188 AIKKMINR 195

>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 156

class: All beta proteins
fold: Obg-fold
superfamily: Obg GTP-binding protein N-terminal domain
family: Obg GTP-binding protein N-terminal domain
domain: Obg GTP-binding protein N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 14/78 (17%)

Query: 24  GTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDK 82
           GT V     G+L +DL   G  VLVARGG GG   +      R+                
Sbjct: 91  GTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSPTRQAPRFAE---------- 140

Query: 83  VLVLGQHGEEVSLELILR 100
               G+ GE+  L L L 
Sbjct: 141 ---AGEEGEKRRLRLELM 155

>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 157

class: All beta proteins
fold: Obg-fold
superfamily: Obg GTP-binding protein N-terminal domain
family: Obg GTP-binding protein N-terminal domain
domain: Obg GTP-binding protein N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 13/84 (15%)

Query: 18  MHIHVTGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMR 77
           + +     V      ++ +DL   G   ++ARGGRGG                       
Sbjct: 87  IKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPANP----------- 135

Query: 78  DDTDKVLVLGQHGEEVSLELILRV 101
               ++   G+ G+E  + L L+V
Sbjct: 136 --APQLSENGEPGKERYIVLELKV 157

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 23/152 (15%)

Query: 99  LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSE 158
           +R++    L+GL NAGK+TLL  +                          T         
Sbjct: 17  VRIL----LLGLDNAGKTTLLKQLASEDIS------------------HITPTQGFNIKS 54

Query: 159 ATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP 218
                    +      + +   +  +   T +L++VID+A      +      E  +   
Sbjct: 55  VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTE-LLEEE 113

Query: 219 DYLERPFIVVLNKIDLPEARDRLQSLTEEILK 250
                P ++  NK DL  A    +      L 
Sbjct: 114 KLSCVPVLIFANKQDLLTAAPASEIAEGLNLH 145

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)

Query: 99  LRVVADVGLVGLPNAGKSTLLAAITHAKPDI 129
           LR++    ++GL NAGK+T+L        D 
Sbjct: 3   LRLL----MLGLDNAGKTTILKKFNGEDVDT 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.92
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.9
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.88
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.87
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.87
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.87
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.86
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.85
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.85
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.85
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.84
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.84
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.84
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.83
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.83
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.83
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.83
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.83
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.83
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.82
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.82
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.82
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.82
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.82
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.81
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.81
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.81
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.81
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.8
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.8
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.8
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.8
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.8
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.79
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.79
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.79
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.78
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.76
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.75
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.72
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.72
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.69
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.69
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.69
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.69
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.69
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.67
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.67
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.66
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.63
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.61
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.57
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.55
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.55
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.55
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.51
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.5
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.49
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.48
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.43
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.36
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.36
d1udxa1	156	Obg GTP-binding protein N-terminal domain {Thermus	99.35
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.32
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.3
d1lnza1	157	Obg GTP-binding protein N-terminal domain {Bacillu	99.29
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.29
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.25
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.24
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.01
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.97
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.94
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.49
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.21
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.02
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.84
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.83
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.82
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.78
d1okkd2	207	GTPase domain of the signal recognition particle r	97.66
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.48
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.48
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.38
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.18
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.15
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.12
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.09
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.02
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.01
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.96
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.94
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.93
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.92
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.9
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.89
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.89
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.87
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.86
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.85
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.84
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.78
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.75
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.74
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.72
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.7
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.67
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.66
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.65
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.64
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.63
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.61
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.55
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.49
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.44
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.43
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.43
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.38
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.34
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.23
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.22
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.19
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.19
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.12
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.11
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.03
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.01
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.95
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.92
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.92
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.9
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.85
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	95.84
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	95.84
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.82
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.75
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.71
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.71
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.67
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.66
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.6
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.57
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.56
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.54
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.44
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.38
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	95.33
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.3
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.26
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.11
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.11
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.04
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.97
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	94.92
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.76
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.71
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	94.65
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	94.56
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.43
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.39
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.38
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	93.92
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	93.88
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	93.72
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	93.71
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	93.67
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.6
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	93.47
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	93.26
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.19
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.13
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	93.12
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	93.08
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	93.05
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	93.0
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	92.91
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	92.9
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.89
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	92.63
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.54
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	92.47
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	92.43
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	92.26
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.15
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	91.87
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	91.84
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	91.48
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	91.46
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	91.43
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	91.16
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	91.15
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	90.69
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.68
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	90.65
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	90.63
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	90.38
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	90.22
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.14
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	89.96
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	89.65
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	89.61
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	89.6
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	89.14
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	89.02
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	89.02
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	87.95
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	87.87
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	87.68
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	87.45
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	87.44
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	87.4
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	87.32
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	87.31
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	86.85
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	86.49
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	86.29
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	85.44
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	85.36
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	85.25
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	85.19
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	85.02
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	84.91
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	83.88
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	83.02
d1xpua3	289	Transcription termination factor Rho, ATPase domai	82.31
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	82.04
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	80.82
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	80.65
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	80.27

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=1.9e-26  Score=193.24  Aligned_cols=169  Identities=47%  Similarity=0.771  Sum_probs=131.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      +++|+|+|+||||||||+|+|++.+..+.+++++|..++.+.......       ..+++|||||+.+.......+.+.+
T Consensus         1 ~~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-------~~~~~~DtpG~~~~~~~~~~~~~~~   73 (185)
T d1lnza2           1 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-------RSFVMADLPGLIEGAHQGVGLGHQF   73 (185)
T ss_dssp             CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-------CEEEEEEHHHHHHHTTCTTTTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-------cEEEEecCCCcccCchHHHHHHHHH
Confidence            478999999999999999999999988889999999888887765321       2689999999987777777888899


Q ss_pred             HHHhhhcCEEEEecccCCCC---cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-hcCCCccc
Q 021615          182 LRHLRRTRLLVHVIDAAAEN---PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-KIGCDKVT  257 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~---~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-~~g~~~~s  257 (310)
                      ++++..|+.++++++.....   ..+....+......+.....++|+++|+||+|+.+..+..+.+.+.+. ...+..+|
T Consensus        74 l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~v~~iS  153 (185)
T d1lnza2          74 LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPIS  153 (185)
T ss_dssp             HHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCS
T ss_pred             HHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhccCCcEEEEE
Confidence            99999999999999876532   233333333444455555668999999999999987655566655443 24456799


Q ss_pred             cCccCCHHHHHHHHhhccCC
Q 021615          258 SETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~~~  277 (310)
                      |+++.|+++++..++..+.+
T Consensus       154 A~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         154 AVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             SCCSSTTHHHHHHHHHHHTS
T ss_pred             CCCCCCHHHHHHHHHHhhhh
Confidence            99999999999998776533

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=2.8e-25  Score=185.28  Aligned_cols=165  Identities=48%  Similarity=0.750  Sum_probs=129.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      +++|+|+|.||||||||+|+|++.+..+.+.+++|..+..+......       ...+++|||||+.+.++....+...+
T Consensus         1 ~~~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~~~DtpG~~~~~~~~~~~~~~~   73 (180)
T d1udxa2           1 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-------EERFTLADIPGIIEGASEGKGLGLEF   73 (180)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-------SCEEEEEECCCCCCCGGGSCCSCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecC-------CCeEEEcCCCeeecCchHHHHHHHHH
Confidence            46899999999999999999999988788888888877776654332       12689999999998877777777889


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc--CCCccccC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVTSE  259 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~--g~~~~sa~  259 (310)
                      ++++..++++++++|.+.. ....+..+...+..+.....++|+++|+||+|+.... ..+.+.+.+...  .+..+||+
T Consensus        74 l~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~iSA~  151 (180)
T d1udxa2          74 LRHIARTRVLLYVLDAADE-PLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEE-AVKALADALAREGLAVLPVSAL  151 (180)
T ss_dssp             HHHHTSSSEEEEEEETTSC-HHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHH-HHHHHHHHHHTTTSCEEECCTT
T ss_pred             HHHHHhhhhhhhhcccccc-cccchhhhhhhhhccccccchhhhhhhhhhhhhhhHH-HHHHHHHHHHhcCCeEEEEEcC
Confidence            9999999999999998753 4455566666655544333468999999999998764 355666666644  34558999


Q ss_pred             ccCCHHHHHHHHhhcc
Q 021615          260 TELSSEDAVKSLSTEG  275 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~  275 (310)
                      ++.|++++++.+.+..
T Consensus       152 tg~gid~L~~~i~~~l  167 (180)
T d1udxa2         152 TGAGLPALKEALHALV  167 (180)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999986655

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=6.8e-24  Score=176.58  Aligned_cols=162  Identities=22%  Similarity=0.222  Sum_probs=117.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC-chHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-KGLGRN  180 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~-~~l~~~  180 (310)
                      ..|+|+|.+|||||||+|+|++.+... ++.+++|.....+......        ..+.++||||+.+..... ..+...
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--------~~~~~~DtpG~~~~~~~~~~~~~~~   77 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--------RQIVFVDTPGLHKPMDALGEFMDQE   77 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--------EEEEEEECCCCCCCCSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--------eeeeecccccccccccccchhcccc
Confidence            369999999999999999999988654 7888888877666554432        278999999997754322 223444


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhcCCCccccC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIGCDKVTSE  259 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~g~~~~sa~  259 (310)
                      ..++++.||++++|+|++++....+ ..+.+.++...   .++|+++|+||+|+....+. .+.+.+.+....+..+||+
T Consensus        78 ~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~  153 (178)
T d1wf3a1          78 VYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV---GKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSAL  153 (178)
T ss_dssp             HHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT---TTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTT
T ss_pred             cccccccccceeeeechhhhhcccc-cchhhheeccc---cchhhhhhhcccccccCHHHHHHHHHhhcccCceEEEecC
Confidence            5677889999999999988655444 55666666543   36899999999999875432 2222222222234458999


Q ss_pred             ccCCHHHHHHHHhhccC
Q 021615          260 TELSSEDAVKSLSTEGG  276 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~~  276 (310)
                      ++.|++++++.+...+-
T Consensus       154 ~~~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         154 DERQVAELKADLLALMP  170 (178)
T ss_dssp             CHHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHhCC
Confidence            99999999999977663

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=3.7e-22  Score=166.11  Aligned_cols=155  Identities=22%  Similarity=0.148  Sum_probs=105.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch------
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG------  176 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~------  176 (310)
                      ++|+++|+||||||||+|+|++.+..++++|+||........            ..+.++||||+.........      
T Consensus         1 a~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~------------~~~~ivDtpG~~~~~~~~~~~~~~~~   68 (184)
T d2cxxa1           1 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW------------KNHKIIDMPGFGFMMGLPKEVQERIK   68 (184)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE------------TTEEEEECCCBSCCTTSCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccccc------------ccceecccCCceeccccccccccccc
Confidence            479999999999999999999999888999999986543222            15789999997543222111      


Q ss_pred             --HHHHHHHHhhhcCEEEEecccCCC-----------CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HH
Q 021615          177 --LGRNFLRHLRRTRLLVHVIDAAAE-----------NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQ  242 (310)
Q Consensus       177 --l~~~~~~~l~~~d~il~VvD~s~~-----------~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~  242 (310)
                        +...+...++.+|++++|+|+...           ....+. .+.+.+..     .++|+++|+||+|+....+. ..
T Consensus        69 ~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~-~~~~~l~~-----~~~p~iiv~NK~D~~~~~~~~~~  142 (184)
T d2cxxa1          69 DEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDV-EFYQFLRE-----LDIPTIVAVNKLDKIKNVQEVIN  142 (184)
T ss_dssp             HHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHH-HHHHHHHH-----TTCCEEEEEECGGGCSCHHHHHH
T ss_pred             hhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHH-HHHHHHHH-----cCCCEEEEEeeeehhhhHHHHHH
Confidence              222334456789999999998642           111222 23344544     37899999999998765432 23


Q ss_pred             HHHHHHHh------cCCCccccCccCCHHHHHHHHhhcc
Q 021615          243 SLTEEILK------IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       243 ~l~~~l~~------~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .+.+.+..      ..+.++||+++.|++++++.+....
T Consensus       143 ~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l  181 (184)
T d2cxxa1         143 FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI  181 (184)
T ss_dssp             HHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            33333221      1133489999999999999886543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.7e-23  Score=168.72  Aligned_cols=158  Identities=20%  Similarity=0.175  Sum_probs=116.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc-hHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLGR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~-~l~~  179 (310)
                      +++|+++|.||||||||+|+|++.+..+ ...+++|.......+....        ..+.++|+||+.+...... ....
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~d~~g~~~~~~~~~~~~~~   72 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--------MPLHIIDTAGLREASDEVERIGIE   72 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--------EEEEEEECCCCSCCSSHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--------ceeeeccccccccccccchhHHHH
Confidence            3689999999999999999999998775 7777787766665554432        2789999999987533211 1112


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccC
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSE  259 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~  259 (310)
                      .....+..+|++++++|..+....+....+...+..+.   .++|+++|+||+|+.......    ..+....+..+||+
T Consensus        73 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~iilv~NK~Dl~~~~~~~----~~~~~~~~~~iSAk  145 (161)
T d2gj8a1          73 RAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP---AKLPITVVRNKADITGETLGM----SEVNGHALIRLSAR  145 (161)
T ss_dssp             HHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC---TTCCEEEEEECHHHHCCCCEE----EEETTEEEEECCTT
T ss_pred             HHHHHHHhccccceeeccccccchhhhhhhhhhhhhcc---cccceeeccchhhhhhhHHHH----HHhCCCcEEEEECC
Confidence            23355678999999999998877777666666666543   368999999999986543211    11223456679999


Q ss_pred             ccCCHHHHHHHHhhc
Q 021615          260 TELSSEDAVKSLSTE  274 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~  274 (310)
                      ++.|++++++.|++.
T Consensus       146 ~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         146 TGEGVDVLRNHLKQS  160 (161)
T ss_dssp             TCTTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999998764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.87  E-value=6.7e-23  Score=182.82  Aligned_cols=115  Identities=37%  Similarity=0.640  Sum_probs=90.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC--------CC-CccCCCceEEEeCCCCCccccC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT--------LG-AEKYSSEATLADLPGLIEGAHL  173 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~--------~~-~~~~~~~~~i~DtPG~~~~~~~  173 (310)
                      ++|||||.||||||||+|+|++.++.+++|||||+.|+.|.+...+.        .. .......+.++|+||++++++.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~   82 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCccc
Confidence            58999999999999999999999999999999999999999975321        00 0000125889999999999999


Q ss_pred             CchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHHHhcC
Q 021615          174 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYN  217 (310)
Q Consensus       174 ~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l~~~~  217 (310)
                      ++|++.+|++|+++||+++||||++.          .++.++++.+..||..|+
T Consensus        83 g~Glg~~FL~~ir~~d~LihVVr~f~~~di~~~~g~~dP~~Die~I~~EL~l~D  136 (278)
T d1jala1          83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALAD  136 (278)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHhccceEEEeeccCCCCCcCCCCCcCHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999853          377888888888877664

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.8e-21  Score=160.51  Aligned_cols=157  Identities=22%  Similarity=0.252  Sum_probs=106.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC--chHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGR  179 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~--~~l~~  179 (310)
                      ++|+++|++|||||||+|+|++.+..+ ++++++|.....+.+.....        .+.++||||+.......  .....
T Consensus         1 a~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~--------~~~~~d~~g~~~~~~~~~~~~~~~   72 (171)
T d1mkya1           1 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--------TFKLVDTCGVFDNPQDIISQKMKE   72 (171)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--------EEEEEECTTTTSSGGGCCCHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcceecccCceeecccccccccccc--------ccccccccceeeeecccccccccc
Confidence            579999999999999999999987654 88899998877777654432        78999999987654322  22334


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC---CCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g---~~~~  256 (310)
                      ..+..+..||++++++|++......+ ..+...+..+     ++|+++|+||+|+.+..  ..+....+.+.+   +.++
T Consensus        73 ~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~-----~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~i  144 (171)
T d1mkya1          73 VTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKS-----TVDTILVANKAENLREF--EREVKPELYSLGFGEPIPV  144 (171)
T ss_dssp             HHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHH-----TCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEEC
T ss_pred             ccccccccCcEEEEeecccccccccc-cccccccccc-----cccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEE
Confidence            45666789999999999987665554 4455666653     68999999999997532  233444444443   3458


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|++++++.+....
T Consensus       145 SAk~g~gid~L~~~i~~~l  163 (171)
T d1mkya1         145 SAEHNINLDTMLETIIKKL  163 (171)
T ss_dssp             BTTTTBSHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHHhC
Confidence            9999999999999987654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=2.8e-22  Score=163.19  Aligned_cols=153  Identities=21%  Similarity=0.257  Sum_probs=114.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc--CCchHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--LGKGLGRN  180 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~--~~~~l~~~  180 (310)
                      ||+++|.||||||||+|+|++.+... ++.+++|..+....+.....        .+.+|||||+.....  ........
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~Dt~G~~~~~~~~~~~~~~~~   73 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--------LFRIVDTAGVRSETNDLVERLGIER   73 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--------EEEEEESSCCCSSCCTTCCCCCHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCe--------eEEeccccccccCCccHHHHHHHHH
Confidence            79999999999999999999987654 78889998877776655432        789999999865432  11222346


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-hcCCCccccC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-KIGCDKVTSE  259 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-~~g~~~~sa~  259 (310)
                      +++++..+|++++|+|++++...++...+ ..+       ...++++++||+|+.+..+ .+++...+. ...+..+||+
T Consensus        74 ~~~~~~~ad~ii~v~d~~~~~~~~~~~~~-~~~-------~~~~~i~~~~k~d~~~~~~-~~~~~~~~~~~~~~~~vSA~  144 (160)
T d1xzpa2          74 TLQEIEKADIVLFVLDASSPLDEEDRKIL-ERI-------KNKRYLVVINKVDVVEKIN-EEEIKNKLGTDRHMVKISAL  144 (160)
T ss_dssp             HHHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH-------TTSSEEEEEEECSSCCCCC-HHHHHHHHTCSTTEEEEEGG
T ss_pred             HHHHHHhCCEEEEEEeCCCCcchhhhhhh-hhc-------ccccceeeeeeccccchhh-hHHHHHHhCCCCcEEEEECC
Confidence            77888999999999999988766654332 222       3578999999999987644 344444443 2345668999


Q ss_pred             ccCCHHHHHHHHhh
Q 021615          260 TELSSEDAVKSLST  273 (310)
Q Consensus       260 ~~~gi~~l~~~l~~  273 (310)
                      ++.|++++++.+.+
T Consensus       145 ~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         145 KGEGLEKLEESIYR  158 (160)
T ss_dssp             GTCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999999998754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.2e-22  Score=165.90  Aligned_cols=158  Identities=16%  Similarity=0.095  Sum_probs=102.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ++||+++|.+|||||||+++|.+.....  ++.++.......+..+    +..+  .+.+|||||+.++..    +.   
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~--~~~~~~~~~~~~i~~~----~~~~--~l~i~D~~g~e~~~~----~~---   65 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGP--EAEAAGHTYDRSIVVD----GEEA--SLMVYDIWEQDGGRW----LP---   65 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEET----TEEE--EEEEEECC-----------CH---
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCC--cCCeeeeeecceeecc----cccc--ceeeeecccccccce----ec---
Confidence            4689999999999999999999875322  2222222222222221    1122  789999999876522    22   


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa  258 (310)
                      ..+++.+|++++|+|++++.+++.+..|+.++..+.. ....|+++|+||+|+....+ ...+..+....  +.+.++||
T Consensus        66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa  144 (168)
T d2gjsa1          66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA  144 (168)
T ss_dssp             HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBT
T ss_pred             ccchhhhhhhceeccccccccccccccccchhhcccc-cccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeC
Confidence            3446789999999999999999999999988876543 23579999999999875422 12222222233  34566899


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|..++...
T Consensus       145 k~~~~v~~~f~~l~~~i  161 (168)
T d2gjsa1         145 ALHHNVQALFEGVVRQI  161 (168)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999987644

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=4.4e-22  Score=163.26  Aligned_cols=156  Identities=17%  Similarity=0.158  Sum_probs=108.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||+++|++.+......|..........+....    .  ...+.+|||+|..+.....       .
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~----~--~~~~~i~d~~g~~~~~~~~-------~   69 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND----E--DVRLMLWDTAGQEEFDAIT-------K   69 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETT----E--EEEEEEECCTTGGGTTCCC-------H
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecC----c--eeeeeeeccCCccchhhhh-------h
Confidence            4799999999999999999997652221111111111111121111    1  1268999999987764321       2


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~sa  258 (310)
                      .+++.+|++++|+|.++..+++.+..|.+++..+.+   +.|+++|+||+|+.+..    +..+.+.+.+ .+.+.++||
T Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sa  145 (164)
T d1z2aa1          70 AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLDDSCIKNEEAEGLAKRL-KLRFYRTSV  145 (164)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCEEEECBT
T ss_pred             hhhccCceEEEEEeccchhhhhhcccccccccccCC---CceEEEeeccCCcccceeeeehhhHHHHHHc-CCEEEEecc
Confidence            446789999999999999999999989888877643   68999999999986532    2233333332 235667899


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|+.+++..
T Consensus       146 k~g~~v~e~f~~l~~~~  162 (164)
T d1z2aa1         146 KEDLNVSEVFKYLAEKH  162 (164)
T ss_dssp             TTTBSSHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999987654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.7e-22  Score=162.56  Aligned_cols=158  Identities=18%  Similarity=0.138  Sum_probs=112.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ++||+++|.+|||||||+++|++.+......+.++.......+....    ..+  .+.+|||||+.+..       ...
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~--~l~i~Dt~G~e~~~-------~~~   71 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING----EKV--KLQIWDTAGQERFR-------SIT   71 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETT----EEE--EEEEEEECCSGGGH-------HHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECC----EEE--EEEEEECCCchhhH-------HHH
Confidence            57899999999999999999998765444444444433333333221    112  68899999986542       122


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVT  257 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~s  257 (310)
                      ..+++.++++++|+|.++..+++....++..+.....  ...|+++|+||+|+....    +....+.+. ..+.+.++|
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~-~~~~~~~~S  148 (171)
T d2ew1a1          72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERREVSQQRAEEFSEA-QDMYYLETS  148 (171)
T ss_dssp             GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCSSCHHHHHHHHHH-HTCCEEECC
T ss_pred             HHHHhccceEEEeeecccchhhhhhhhhhhhhccccc--ccccEEEEEeecccccccchhhhHHHHHHHh-CCCEEEEEc
Confidence            3456899999999999998888888888887766533  468999999999986532    222333322 234566799


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |+++.|++++|..++..+
T Consensus       149 Aktg~gV~e~f~~l~~~l  166 (171)
T d2ew1a1         149 AKESDNVEKLFLDLACRL  166 (171)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHH
Confidence            999999999999887654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.5e-21  Score=157.61  Aligned_cols=158  Identities=13%  Similarity=0.088  Sum_probs=111.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      +||+++|.+|||||||+++|++.+......+.++..........+.    ..  ..+.+|||+|+.+...       ...
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~i~d~~g~~~~~~-------~~~   67 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED----RT--IRLQLWDTAGQERFRS-------LIP   67 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSS----CE--EEEEEEEECCSGGGGG-------GHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCC----Cc--eeeeecccCCcchhcc-------chH
Confidence            5899999999999999999998764332222222222222222211    11  2689999999976532       233


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~sa~  259 (310)
                      .++..+|++++|+|.++..+++.+..|+.++..+..  .+.|+++|+||+|+.+... ..++..+.....+  +.++||+
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk  145 (164)
T d1yzqa1          68 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK  145 (164)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             HHhhccceEEEeeccccccchhhhHhhHHHHHHhcC--CCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCC
Confidence            456789999999999999999999888888776543  3689999999999865322 2233444444444  4669999


Q ss_pred             ccCCHHHHHHHHhhcc
Q 021615          260 TELSSEDAVKSLSTEG  275 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~  275 (310)
                      ++.|++++|+.+++.+
T Consensus       146 ~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         146 AGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             TCTTHHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHHhh
Confidence            9999999999988754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.8e-21  Score=160.90  Aligned_cols=162  Identities=17%  Similarity=0.168  Sum_probs=104.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ++||+++|.+|||||||+++|++.+.... +..++.............    .....+.+|||||..+...       ..
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~----~~~~~~~~~d~~g~~~~~~-------~~   69 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQ-YKATIGADFLTKEVTVDG----DKVATMQVWDTAGQERFQS-------LG   69 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTT-C---CCCSCEEEEECCSS----SCCEEEEEECCC----------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCc-cCcccccceeeeeeeecC----cccccceeeccCCchhhhh-------HH
Confidence            56899999999999999999998763321 111111111111111100    0112578999999865422       22


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcH-----hHHHHHHHHHHhcCCC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEAR-----DRLQSLTEEILKIGCD  254 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~~-----~~~~~l~~~l~~~g~~  254 (310)
                      ..+++.+|++++|+|+++..+++....|..++..+..  ...+.|+++|+||+|+.+..     +..+++.+.+....+.
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~  149 (175)
T d1ky3a_          70 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLF  149 (175)
T ss_dssp             -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEE
T ss_pred             HHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEE
Confidence            3346789999999999999889888888888865432  22468999999999987532     2334444444445667


Q ss_pred             ccccCccCCHHHHHHHHhhcc
Q 021615          255 KVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ++||+++.|++++|..++..+
T Consensus       150 e~SA~~g~gv~e~f~~l~~~~  170 (175)
T d1ky3a_         150 LTSAKNAINVDTAFEEIARSA  170 (175)
T ss_dssp             EEBTTTTBSHHHHHHHHHHHH
T ss_pred             EEeCCCCcCHHHHHHHHHHHH
Confidence            799999999999999987654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.6e-21  Score=160.70  Aligned_cols=158  Identities=13%  Similarity=0.135  Sum_probs=108.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ++||+++|.+|||||||+++|++.+......+..+.......+....    .  ...+.+|||||+.+..       ...
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~l~~wDt~G~e~~~-------~~~   71 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND----K--RIKLQIWDTAGQERYR-------TIT   71 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETT----E--EEEEEEEEECCSGGGH-------HHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeec----c--eEEEEEEECCCchhhH-------HHH
Confidence            56899999999999999999998763332222222222222222111    0  1268999999986542       222


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVT  257 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~s  257 (310)
                      ..+++.||++++|+|+++..++.....++..+.....  ...|+++|+||+|+....    +..+.+.+.+ .+.+.++|
T Consensus        72 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~-~~~~~e~S  148 (169)
T d3raba_          72 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDERVVSSERGRQLADHL-GFEFFEAS  148 (169)
T ss_dssp             HTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC--SCCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEECB
T ss_pred             HHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccC--CcceEEEEEeecccccccccchhhhHHHHHHc-CCEEEEec
Confidence            3357799999999999998888888777776665432  468899999999986532    2223333222 34566799


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |+++.|++++|+.++...
T Consensus       149 ak~g~gv~e~f~~l~~~i  166 (169)
T d3raba_         149 AKDNINVKQTFERLVDVI  166 (169)
T ss_dssp             TTTTBSHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHH
Confidence            999999999999987643

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.3e-21  Score=162.17  Aligned_cols=160  Identities=19%  Similarity=0.118  Sum_probs=111.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .+.||+++|.+|||||||++++++........+.++.......+..+.    .  ...+.+|||||..++...       
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~i~d~~g~e~~~~~-------   69 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG----K--TIKAQIWDTAGQERYRRI-------   69 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETT----E--EEEEEEEECSSGGGTTCC-------
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECC----E--EEEEEecccCCcHHHHHH-------
Confidence            356899999999999999999998765443333333333333333221    1  127899999998765432       


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHH--hcCCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~--~~g~~~~s  257 (310)
                      +...+..+|++++|+|.+++.++.....++.++..+..  .+.|+++|+||+|+.+.... .+.......  ...+.++|
T Consensus        70 ~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  147 (175)
T d2f9la1          70 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETS  147 (175)
T ss_dssp             CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred             HHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcC--CCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEe
Confidence            23445789999999999999999988888888887654  46899999999998754221 122222222  23456699


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |+++.|++++|..+....
T Consensus       148 a~~g~~i~e~f~~l~~~i  165 (175)
T d2f9la1         148 ALDSTNVEEAFKNILTEI  165 (175)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             cCCCcCHHHHHHHHHHHH
Confidence            999999999999887654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=3.6e-21  Score=160.70  Aligned_cols=161  Identities=19%  Similarity=0.228  Sum_probs=108.6

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ++||+|+|.+|||||||+++|++.+... .+. +|..+.........  ...  ...+.+|||||..+.....       
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~-~~~-~t~~~~~~~~~~~~--~~~--~~~~~~~d~~g~~~~~~~~-------   68 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSN-QYK-ATIGADFLTKEVMV--DDR--LVTMQIWDTAGQERFQSLG-------   68 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCS-SCC-CCCSEEEEEEEEES--SSC--EEEEEEEEECSSGGGSCSC-------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCC-CcC-Cccceeeeeeeeee--CCc--eEEEEeeecCCcccccccc-------
Confidence            5789999999999999999999876322 222 22211111111110  011  1268899999987654432       


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH---hcCCCcc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDKV  256 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~---~~g~~~~  256 (310)
                      ...+..||++++|+|.++..++..+..|+.++..+..  .....|+++|+||+|+.+.....+...+...   .+.+.++
T Consensus        69 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  148 (184)
T d1vg8a_          69 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFET  148 (184)
T ss_dssp             CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEEC
T ss_pred             cccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEE
Confidence            2345689999999999998888888888877765422  1235799999999998764322223333322   3456679


Q ss_pred             ccCccCCHHHHHHHHhhcc
Q 021615          257 TSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       257 sa~~~~gi~~l~~~l~~~~  275 (310)
                      ||+++.|+.++|+.|+..+
T Consensus       149 Sak~~~gI~e~f~~l~~~i  167 (184)
T d1vg8a_         149 SAKEAINVEQAFQTIARNA  167 (184)
T ss_dssp             BTTTTBSHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHH
Confidence            9999999999999987755

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.4e-21  Score=158.24  Aligned_cols=163  Identities=17%  Similarity=0.075  Sum_probs=114.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||+++|++.+......+.++.......+....    ..  ..+.+|||||+.+...    +.   .
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~----~~---~   74 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG----NK--AKLAIWDTAGQERFRT----LT---P   74 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT----EE--EEEEEEEECSSGGGCC----SH---H
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEec----cc--cEEEEEECCCchhhHH----HH---H
Confidence            5799999999999999999998764333233333322222232221    11  2689999999876633    22   2


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC--CCccccCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTSET  260 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g--~~~~sa~~  260 (310)
                      .++..+|++++|+|+++..+++....++.++..+... ...|+++++||.|.........+..+.....+  +.++||++
T Consensus        75 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~t  153 (177)
T d1x3sa1          75 SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTR-NDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKT  153 (177)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSC-SCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             HHHhcCCEEEEEEECCCccccccchhhhhhhcccccc-cceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCC
Confidence            3456899999999999988888888888888765432 36889999999998764333334444444444  55689999


Q ss_pred             cCCHHHHHHHHhhccCCcc
Q 021615          261 ELSSEDAVKSLSTEGGEAD  279 (310)
Q Consensus       261 ~~gi~~l~~~l~~~~~~~~  279 (310)
                      |.|++++|+.++..+.+.+
T Consensus       154 g~gv~e~f~~l~~~l~~~p  172 (177)
T d1x3sa1         154 CDGVQCAFEELVEKIIQTP  172 (177)
T ss_dssp             CTTHHHHHHHHHHHHHTSG
T ss_pred             CCCHHHHHHHHHHHHccCc
Confidence            9999999999887765543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.4e-21  Score=158.14  Aligned_cols=158  Identities=18%  Similarity=0.092  Sum_probs=108.6

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ++||+|+|.+|||||||++++++.+......+.++.......+..+.    ..  ..+.+|||||+.+.    ..+..  
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~l~i~D~~g~~~~----~~~~~--   71 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG----QK--IKLQIWDTAGQERF----RAVTR--   71 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETT----EE--EEEEEEECTTGGGT----CHHHH--
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECC----EE--EEEEEeccCCchhH----HHHHH--
Confidence            57899999999999999999998764332222222222222222111    11  27899999998765    22332  


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~sa  258 (310)
                       ..++.+|++++|+|.++..+++....++..+.....  ...|+++|+||+|+...... .++........  .+.++||
T Consensus        72 -~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  148 (166)
T d1z0fa1          72 -SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASA  148 (166)
T ss_dssp             -HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             -HHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhcc--ccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeC
Confidence             345689999999999998888888888888776543  46899999999998643221 22333333444  4456999


Q ss_pred             CccCCHHHHHHHHhhc
Q 021615          259 ETELSSEDAVKSLSTE  274 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~  274 (310)
                      +++.|++++|..+++.
T Consensus       149 ktg~~v~e~f~~i~~~  164 (166)
T d1z0fa1         149 KTGENVEDAFLEAAKK  164 (166)
T ss_dssp             TTCTTHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            9999999999987654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.3e-21  Score=160.60  Aligned_cols=159  Identities=17%  Similarity=0.153  Sum_probs=108.8

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      +.++||+|+|.+|||||||+++|+.... ...+..|........+....    ..+  .+.+|||+|+..+...      
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f-~~~~~~Ti~~~~~~~~~~~~----~~~--~l~i~D~~g~e~~~~~------   73 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGG----KQY--LLGLYDTAGQEDYDRL------   73 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSS----CEE--EEEEECCCCSSSSTTT------
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCceeeeeeEEEeeCC----ceE--Eeecccccccchhhhh------
Confidence            3467899999999999999999997652 23333333322222222221    112  6899999999776332      


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----------------hHHH
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRLQ  242 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----------------~~~~  242 (310)
                       ...++..+|++++|+|++++.+++... .|...++.+.   .+.|+++|+||+|+.+..                +...
T Consensus        74 -~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~---~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~  149 (185)
T d2atxa1          74 -RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ  149 (185)
T ss_dssp             -GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH
T ss_pred             -hhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcC---CCCCeeEeeeccccccchhhhhhhhhcccccccHHHHH
Confidence             123467899999999999988887654 4555555543   368999999999987532                1223


Q ss_pred             HHHHHHHhcCCCccccCccCCHHHHHHHHhhcc
Q 021615          243 SLTEEILKIGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       243 ~l~~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .+.+.+..+.+.++||+++.|++++|+.+....
T Consensus       150 ~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         150 KLAKEIGACCYVECSALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             HHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence            344444445667799999999999999876543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.8e-21  Score=159.27  Aligned_cols=158  Identities=15%  Similarity=0.154  Sum_probs=107.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      +||+++|.+|||||||+++|++.... ..+..|.-.........+    ...  ..+.+|||+|...+..       ...
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~f~-~~~~~T~~~~~~~~~~~~----~~~--~~l~~~d~~g~~~~~~-------~~~   68 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGTFR-ESYIPTVEDTYRQVISCD----KSI--CTLQITDTTGSHQFPA-------MQR   68 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCCC-SSCCCCSCEEEEEEEEET----TEE--EEEEEEECCSCSSCHH-------HHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-CccCcceeeccccceeec----ccc--ceeccccccccccccc-------ccc
Confidence            58999999999999999999986522 222222211111111111    111  2678999999876522       233


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~sa  258 (310)
                      .++..+|++++|+|++++.+++.+..|+.++..+.....+.|+++|+||+|+....    +..+.+.+.+ .+.+.++||
T Consensus        69 ~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~-~~~~~e~Sa  147 (171)
T d2erxa1          69 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW-KCAFMETSA  147 (171)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TCEEEECBT
T ss_pred             ccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHc-CCeEEEEcC
Confidence            45678999999999999989998888888876654444578999999999986432    2233333222 245667999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|..+....
T Consensus       148 k~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         148 KLNHNVKELFQELLNLE  164 (171)
T ss_dssp             TTTBSHHHHHHHHHHTC
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999987654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.7e-21  Score=162.18  Aligned_cols=158  Identities=18%  Similarity=0.136  Sum_probs=110.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      .++||+|+|.+|||||||+++|++.....  .+..+++.......+...        ...+.+|||||+.++....    
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~--------~~~l~i~Dt~G~e~~~~~~----   72 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK--------TVKLQIWDTAGQERFRTIT----   72 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE--------EEEEEEECCTTTTTTTCCC----
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeE--------EEEEEEEECCCchhhHHHH----
Confidence            45789999999999999999999765322  233333332222222211        1278999999998764321    


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHH--hcCCCc
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDK  255 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~--~~g~~~  255 (310)
                         ...++.||++++|+|+++..++.....++..+.....  ...|+++|+||+|+.+.... .+.......  ...+.+
T Consensus        73 ---~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e  147 (194)
T d2bcgy1          73 ---SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLE  147 (194)
T ss_dssp             ---GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEE
T ss_pred             ---HHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhccc--CCceEEEEEeccccccccchhHHHHhhhhhccCcceEE
Confidence               2346789999999999998888888877777765433  46899999999999864221 122222222  345666


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +||+++.|++++|+.+....
T Consensus       148 ~SAk~g~gi~e~f~~l~~~i  167 (194)
T d2bcgy1         148 TSALDSTNVEDAFLTMARQI  167 (194)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EecCcCccHHHHHHHHHHHH
Confidence            89999999999999987654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=7.5e-21  Score=156.25  Aligned_cols=157  Identities=17%  Similarity=0.130  Sum_probs=109.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccc-eEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL-GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~-~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .||+++|.+|||||||+++|++.+... .+..|+..... ..+....      ....+.+|||+|..+...    +..  
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~~~f~~-~~~~t~~~~~~~~~~~~~~------~~~~~~i~d~~g~~~~~~----~~~--   71 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVEDSFDP-NINPTIGASFMTKTVQYQN------ELHKFLIWDTAGLERFRA----LAP--   71 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETT------EEEEEEEEEECCSGGGGG----GTH--
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCc-ccccccccccccccccccc------cccceeeeecCCchhhhH----HHH--
Confidence            579999999999999999999876322 22222221111 1111111      112678999999987633    222  


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~sa  258 (310)
                       .++..+|++++|+|++++.+++.+..|+.++.....  ...|+++|+||+|+.+... ..++..+.....+  +.++||
T Consensus        72 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA  148 (167)
T d1z0ja1          72 -MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSA  148 (167)
T ss_dssp             -HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             -HHHhhccceEEEeeechhhhhhhHHHhhhhhhhccC--CcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEec
Confidence             345689999999999999999999888887776544  4689999999999965322 1223333334444  457999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|..+++..
T Consensus       149 k~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         149 KNAININELFIEISRRI  165 (167)
T ss_dssp             TTTBSHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHhC
Confidence            99999999999987764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.83  E-value=6.5e-21  Score=157.01  Aligned_cols=159  Identities=18%  Similarity=0.185  Sum_probs=106.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      +.||+++|.+|||||||++++++.+. ...+..|.-......+..+    +..  ..+.+||++|..+.    ..+.   
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f-~~~~~~T~~~~~~~~~~~~----~~~--~~l~i~d~~g~~~~----~~~~---   69 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLD----GEE--VQIDILDTAGQEDY----AAIR---   69 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEET----TEE--EEEEEEECCC---C----HHHH---
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCC-CcccCCccccccccccccc----ccc--ccccccccccccch----hhhh---
Confidence            46899999999999999999987652 2223223222222222221    111  27899999999765    2222   


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa  258 (310)
                      ..+++.+|++++|+|.++..+++....|++++..+.. ..+.|+++|+||+|+..... ..++..+....  +.+.++||
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa  148 (168)
T d1u8za_          70 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSA  148 (168)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred             hhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhC-CCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcC
Confidence            3345689999999999999999999889888876532 13689999999999864321 12233333333  44577999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|+.|.+..
T Consensus       149 k~g~gv~e~f~~l~~~i  165 (168)
T d1u8za_         149 KTRANVDKVFFDLMREI  165 (168)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999987543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.4e-21  Score=158.19  Aligned_cols=159  Identities=16%  Similarity=0.092  Sum_probs=110.6

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .+||+++|.+|||||||+++|++.+.. ..+..|+.......+..+.    ..+  .+.+|||+|..+...    +.   
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~~~f~-~~~~~t~~~~~~~~~~~~~----~~~--~l~~~d~~g~~~~~~----~~---   71 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKICSVDG----IPA--RLDILDTAGQEEFGA----MR---   71 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCC-SSCCTTCCEEEEEEEEETT----EEE--EEEEEECCCTTTTSC----CH---
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCC-cccccccccceeeEeccCC----eee--eeecccccccccccc----cc---
Confidence            468999999999999999999976532 2333333333223333221    112  688999999987633    22   


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~sa  258 (310)
                      ..+++.+|++++|+|.++..+++.+..|+..+..... ..+.|+++|+||+|+..... ..++........  .+.++||
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  150 (173)
T d2fn4a1          72 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASA  150 (173)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             chhhccceeeeeecccccccccchhhhhhHHHHHHhc-cCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeC
Confidence            2345689999999999999999988888887754321 24689999999999864321 122333333444  4456899


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|+.++..+
T Consensus       151 k~g~gv~e~f~~l~~~i  167 (173)
T d2fn4a1         151 KLRLNVDEAFEQLVRAV  167 (173)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999987654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.6e-21  Score=158.50  Aligned_cols=158  Identities=16%  Similarity=0.102  Sum_probs=108.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ++||+++|.+|||||||++++++.+......+.++............    .  ...+.+||++|.......       +
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~i~d~~g~~~~~~~-------~   69 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDG----K--QIKLQIWDTAGQESFRSI-------T   69 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETT----E--EEEEEEECCTTGGGTSCC-------C
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeee----e--EEEEEeecccCccchhhH-------H
Confidence            46899999999999999999998764332222222222222221111    0  126899999999776332       2


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVT  257 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~s  257 (310)
                      ...+..+|++++|+|..++.+++....|+.++..+..  .+.|+++|+||+|+....    +....+.+.. .+.+.++|
T Consensus        70 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~-~~~~~e~S  146 (173)
T d2a5ja1          70 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESRRDVKREEGEAFAREH-GLIFMETS  146 (173)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEEEC
T ss_pred             HHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCC--CCCeEEEEecCCchhhhhhhHHHHHHHHHHHc-CCEEEEec
Confidence            2345689999999999999999999888888877643  468999999999976432    2223333222 34556799


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |++|.|++++|..++...
T Consensus       147 a~tg~~V~e~f~~i~~~i  164 (173)
T d2a5ja1         147 AKTACNVEEAFINTAKEI  164 (173)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999987654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.4e-21  Score=157.60  Aligned_cols=159  Identities=15%  Similarity=0.032  Sum_probs=109.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..||+++|.+|||||||+++|++.+......+..........+..+.    .  ...+.+|||||+.++.       ..+
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~i~D~~G~~~~~-------~~~   71 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG----K--YVKLQIWDTAGQERFR-------SVT   71 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETT----E--EEEEEEEEECCSGGGH-------HHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecC----c--ceeEEEEECCCchhhh-------hhH
Confidence            46899999999999999999997764322222222211111221111    0  1268999999986652       233


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~sa  258 (310)
                      ..++..+|++++|+|.++..++..+..++..+..+..  .+.|+++|+||+|+....+. .....+.....  .+.++||
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  149 (174)
T d2bmea1          72 RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA  149 (174)
T ss_dssp             HTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             HHHhhhCCEEEEEEecccchhHHHHhhhhcccccccC--CceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeC
Confidence            4556789999999999998888888888888776543  46899999999998643221 12222222333  4566999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|..+...+
T Consensus       150 k~~~gi~e~f~~l~~~i  166 (174)
T d2bmea1         150 LTGENVEEAFVQCARKI  166 (174)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999887654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.3e-20  Score=153.24  Aligned_cols=158  Identities=16%  Similarity=0.176  Sum_probs=110.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      +||+++|.+|||||||+++++..+.. ..+..|........+..+.    ..  ..+.+||++|+.....    +.   .
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~f~-~~~~~t~~~~~~~~~~~~~----~~--~~~~~~d~~g~~~~~~----~~---~   69 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDC----QQ--CMLEILDTAGTEQFTA----MR---D   69 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEESSS----CE--EEEEEEEECSSCSSTT----HH---H
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC-CccCCccccccceeEEeee----eE--EEeccccccCcccccc----cc---c
Confidence            58999999999999999999987632 2222222222222222221    11  2689999999987632    22   2


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~sa  258 (310)
                      .+++.+|++++|+|++++.+++.+..|+..+..... ..+.|+++|+||+|+....    +....+.+.+....+.++||
T Consensus        70 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  148 (167)
T d1c1ya_          70 LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA  148 (167)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred             ccccccceeEEeeeccchhhhHhHHHHHHHHHHhcC-CCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcC
Confidence            345689999999999999999999988887765421 2468999999999986532    22233333333445667999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|..++...
T Consensus       149 k~g~gv~e~F~~l~~~i  165 (167)
T d1c1ya_         149 KSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHh
Confidence            99999999999987643

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.83  E-value=6.1e-21  Score=171.45  Aligned_cols=116  Identities=32%  Similarity=0.548  Sum_probs=96.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCC---------CCccCCCceEEEeCCCCCccc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTL---------GAEKYSSEATLADLPGLIEGA  171 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~---------~~~~~~~~~~i~DtPG~~~~~  171 (310)
                      .++|||||.||||||||+|+|+++.. .+++|||||++|+.|.+...+.-         +.......+.++|+||+++++
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA   89 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   89 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence            36799999999999999999998864 68999999999999998643210         000011268999999999999


Q ss_pred             cCCchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHHHhcC
Q 021615          172 HLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYN  217 (310)
Q Consensus       172 ~~~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l~~~~  217 (310)
                      +.+.|++.+|+.++++||++++|||+..          .++.++++.+..||..++
T Consensus        90 ~~g~GLGn~fL~~ir~~d~lihVV~~f~d~~i~~~~g~~dP~~Di~~I~~EL~l~d  145 (296)
T d1ni3a1          90 STGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKD  145 (296)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHhhccceeEEEEeccCCCCCCCCCCCcCcchhhhhhhhhHHHhh
Confidence            9999999999999999999999999865          367888888888876554

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=2.1e-20  Score=155.75  Aligned_cols=161  Identities=23%  Similarity=0.266  Sum_probs=109.1

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-----C
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-----L  173 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-----~  173 (310)
                      +...+|+++|.+|||||||+|+|++.+... ++++++|.....+.+.....        .+.++||||+.....     .
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------~~~~~d~~g~~~~~~~~~~~~   77 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--------KYVFVDTAGLRRKSRVEPRTV   77 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--------EEEESSCSCC-----------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--------eeeeeccCCcccccccccccc
Confidence            345689999999999999999999988654 88889988877776654432        789999999865321     1


Q ss_pred             CchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHH---
Q 021615          174 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEIL---  249 (310)
Q Consensus       174 ~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~---  249 (310)
                      ..........+++.||++++|+|++.+...+. ..+...+..     .+.|+++|+||+|+....+ ...++.+.+.   
T Consensus        78 ~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~-----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~  151 (186)
T d1mkya2          78 EKYSNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKL  151 (186)
T ss_dssp             CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHC
T ss_pred             ccchhHHHHHHHhcCCEEEEeecccccchhhH-HHHHHHHHH-----cCCceeeeccchhhhcchhhhhhhHHHHHHHHh
Confidence            12233456777889999999999987655544 344555555     3689999999999875432 2333333333   


Q ss_pred             -hcC---CCccccCccCCHHHHHHHHhhc
Q 021615          250 -KIG---CDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       250 -~~g---~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                       ...   +..+||+++.|++++++.+...
T Consensus       152 ~~~~~~~i~~vSa~~g~gv~~L~~~i~~~  180 (186)
T d1mkya2         152 YFIDYSPLIFTSADKGWNIDRMIDAMNLA  180 (186)
T ss_dssp             GGGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             cccCCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence             222   3448999999999999987543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.8e-20  Score=153.62  Aligned_cols=159  Identities=14%  Similarity=0.078  Sum_probs=109.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      +.||+++|.+|||||||+++|++.+......+.++.......+....    ..  ..+.+|||||+..+...    .   
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~----~~--~~~~i~Dt~G~~~~~~~----~---   68 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING----KK--VKLQIWDTAGQERFRTI----T---   68 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSS----CE--EEEEEECCTTGGGTSCC----C---
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECC----EE--EEEEEEECCCchhhHHH----H---
Confidence            57899999999999999999998764333233333333333443322    11  26889999998766432    1   


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCccccC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSE  259 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa~  259 (310)
                      ..+++.+|++++|+|.+++.+++....+...+.....  ...|.+++.||.|+.......++..+....  ..+.++||+
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  146 (166)
T d1g16a_          69 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAK  146 (166)
T ss_dssp             HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred             HHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhcccc--CcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCC
Confidence            2446789999999999998888888777766665543  467899999999987653333333333333  455669999


Q ss_pred             ccCCHHHHHHHHhhcc
Q 021615          260 TELSSEDAVKSLSTEG  275 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~  275 (310)
                      ++.|++++|+.|+...
T Consensus       147 ~~~~v~e~f~~l~~~i  162 (166)
T d1g16a_         147 NDDNVNEIFFTLAKLI  162 (166)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999987644

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.83  E-value=2.5e-20  Score=152.59  Aligned_cols=154  Identities=23%  Similarity=0.287  Sum_probs=107.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|++|||||||+++|.+.+.... + .+|.......+....        ..+.+||+||.....       ..+.
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~~-~-~~T~~~~~~~~~~~~--------~~~~i~D~~G~~~~~-------~~~~   65 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQFNED-M-IPTVGFNMRKITKGN--------VTIKLWDIGGQPRFR-------SMWE   65 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCS-C-CCCCSEEEEEEEETT--------EEEEEEEECCSHHHH-------TTHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCCc-c-cccceeeeeeeeeee--------EEEEEeecccccccc-------cccc
Confidence            4799999999999999999998764322 1 234444444444332        278999999975442       2334


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------hcCCCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDK  255 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~~g~~~  255 (310)
                      .++..++++++|+|+++..++.....++..+... ....+.|+++|+||+|+....+ ..++.+.+.       ...+.+
T Consensus        66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pi~lv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~e  143 (164)
T d1zd9a1          66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGALD-EKELIEKMNLSAIQDREICCYS  143 (164)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEE
T ss_pred             ccccccchhhcccccccccccchhhhhhhhhhhh-hcccCCcEEEEEeccccchhhh-HHHHHHHHHHHHHHhCCCEEEE
Confidence            5577999999999999888877776665555432 1234789999999999976432 233333332       113456


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +||+++.|++++|++|....
T Consensus       144 ~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         144 ISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             CCTTTCTTHHHHHHHHHHTC
T ss_pred             EeCcCCcCHHHHHHHHHHcc
Confidence            99999999999999987643

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.82  E-value=1.5e-20  Score=156.56  Aligned_cols=163  Identities=18%  Similarity=0.169  Sum_probs=100.1

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  177 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l  177 (310)
                      +|.+ +|+++|+||||||||+|+|++..... .+...++.  ..+.............+..+.++|+||+.+       +
T Consensus         3 ~k~i-nIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~   72 (179)
T d1wb1a4           3 FKNI-NLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQ--KRGITIDIGFSAFKLENYRITLVDAPGHAD-------L   72 (179)
T ss_dssp             CEEE-EEEEEECTTSSHHHHHHHHHTTC----------------------CCCEEEETTEEEEECCCSSHHH-------H
T ss_pred             CCCE-EEEEEeCCCCcHHHHHHHHHHhcCceeccccccee--eeeeeccccccccccCCccccccccccccc-------c
Confidence            3444 79999999999999999999764322 22111111  111100000000000123689999999854       3


Q ss_pred             HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH--HHHHHHH-HHh----
Q 021615          178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR--LQSLTEE-ILK----  250 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~--~~~l~~~-l~~----  250 (310)
                      .+.....+..+|++++|+|++.+...++.+ ++..+..     .++|+++|+||+|+.+.++.  ...+.+. +..    
T Consensus        73 ~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~-~~~~~~~-----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
T d1wb1a4          73 IRAVVSAADIIDLALIVVDAKEGPKTQTGE-HMLILDH-----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL  146 (179)
T ss_dssp             HHHHHHHTTSCCEEEEEEETTTCSCHHHHH-HHHHHHH-----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG
T ss_pred             ccchhhhhhhccccccccccccccchhhhh-hhhhhhh-----cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcC
Confidence            445567788999999999999876555443 4455555     47899999999999876431  1222222 221    


Q ss_pred             --cCCCccccCccCCHHHHHHHHhhccCC
Q 021615          251 --IGCDKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       251 --~g~~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                        ..+.++||++|.|++++++.+...+.+
T Consensus       147 ~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         147 KNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             GGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence              234458999999999999998765533

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.2e-21  Score=155.59  Aligned_cols=157  Identities=17%  Similarity=0.163  Sum_probs=107.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      +||+++|.+|||||||++++++.+... .+..|..+.....+..+.    .  ...+.+||++|.....       ....
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~-~~~~t~~~~~~~~~~~~~----~--~~~l~~~d~~g~~~~~-------~~~~   69 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDS----S--PSVLEILDTAGTEQFA-------SMRD   69 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETT----E--EEEEEEEECCCTTCCH-------HHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCC-ccCCceeeeeeeeeecCc----c--eEeeccccCCCccccc-------cchH
Confidence            589999999999999999999875322 222121111111111111    1  1268999999986652       2333


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~sa  258 (310)
                      .+++.+|++++|+|.++..++.....|+.++..... ..+.|+++|+||+|+....    +....+.+.+ .+.+.++||
T Consensus        70 ~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~Sa  147 (167)
T d1kaoa_          70 LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSEGRALAEEW-GCPFMETSA  147 (167)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TSCEEEECT
T ss_pred             HHhhcccceeeeeeecchhhhhhhhchhhhhhhhcc-CCCCCEEEEEEccchhhcccchHHHHHHHHHHc-CCeEEEECC
Confidence            456789999999999999999999999888776443 2468999999999986532    1222232222 345667899


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|..++..+
T Consensus       148 k~g~~i~e~f~~i~~~i  164 (167)
T d1kaoa_         148 KSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999987643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.4e-20  Score=155.05  Aligned_cols=159  Identities=14%  Similarity=0.053  Sum_probs=107.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .+||+++|.+|||||||+++|++.+......+..+.......+....      ....+.+|||||..+...    +.   
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~------~~~~~~~~d~~g~~~~~~----~~---   72 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD------TTVKFEIWDTAGQERYHS----LA---   72 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT------EEEEEEEEEECCSGGGGG----GH---
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccc------eEEEEEeccCCCchhhhh----hH---
Confidence            36899999999999999999997763322111111111111111111      012689999999976532    22   


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~sa  258 (310)
                      ..+++.+|++++|+|.++..+++....|+..+.....  .+.|+++|+||+|+...... .+...+.....  .+.++||
T Consensus        73 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SA  150 (170)
T d1r2qa_          73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSA  150 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             HHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccC--CCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeC
Confidence            2346789999999999999899888888887765432  46899999999998653221 22222223333  4567999


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|..++...
T Consensus       151 k~g~~V~e~f~~l~~~i  167 (170)
T d1r2qa_         151 KTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             TTCTTHHHHHHHHHHTS
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999987755

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.82  E-value=1.5e-20  Score=155.40  Aligned_cols=151  Identities=21%  Similarity=0.209  Sum_probs=104.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .||+++|.+|||||||+|+|++.+... .+    |.......+....        ..+.+||+||....       ...+
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~----~~~~~~~~i~~~~--------~~~~i~d~~g~~~~-------~~~~   77 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQG--------FKLNVWDIGGQRKI-------RPYW   77 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETT--------EEEEEEECSSCGGG-------HHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCccee----eeeeeEEEeccCC--------eeEeEeeccccccc-------hhHH
Confidence            579999999999999999998876321 11    1111122232221        27899999998654       3345


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-----h--cCCC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGCD  254 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-----~--~g~~  254 (310)
                      ..++..+|++++|+|+++..++.....++.++.... ...+.|+++|+||+|+.+..+ ...+.+.+.     .  ..+.
T Consensus        78 ~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~-~~~~~pillv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~  155 (176)
T d1fzqa_          78 RSYFENTDILIYVIDSADRKRFEETGQELTELLEEE-KLSCVPVLIFANKQDLLTAAP-ASEIAEGLNLHTIRDRVWQIQ  155 (176)
T ss_dssp             HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCG-GGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEE
T ss_pred             HHHhhccceeEEeeccccccchhhhhhhhhhhhhhh-ccCCCeEEEEEEecccccccc-HHHHHHHHHHHHHHhcCCEEE
Confidence            567789999999999999888887766665554322 224689999999999986533 233333322     1  1244


Q ss_pred             ccccCccCCHHHHHHHHhhc
Q 021615          255 KVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~  274 (310)
                      ++||++|.|++++|++|+..
T Consensus       156 ~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         156 SCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             ECCTTTCTTHHHHHHHHHHT
T ss_pred             EEeCCCCCCHHHHHHHHHhc
Confidence            58999999999999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.7e-20  Score=153.91  Aligned_cols=161  Identities=17%  Similarity=0.121  Sum_probs=109.2

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeec-cceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP-NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~-~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      .++||+|+|.+|||||||+++|++.+... .+..|+... ....+....    ..  ..+.+||++|..+.       ..
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~----~~--~~~~i~d~~g~~~~-------~~   70 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDG----HF--VTMQIWDTAGQERF-------RS   70 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETT----EE--EEEEEEECCCCGGG-------HH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCC-ccccceeeeeeeeeeeecC----ce--eeEeeecccCccee-------hh
Confidence            46789999999999999999999865322 222222111 111111111    11  26789999998554       22


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcH---hHHHHHHHHHHhcCCC
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGCD  254 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~~---~~~~~l~~~l~~~g~~  254 (310)
                      ....++..+|++++++|.++..+++.+..|.+++..+..  ...+.|+++|+||+|+.+..   +...++.+....+.+.
T Consensus        71 ~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~  150 (174)
T d1wmsa_          71 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYF  150 (174)
T ss_dssp             HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEE
T ss_pred             hhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEE
Confidence            344556789999999999998888888888877765432  22368999999999986532   2233344333345567


Q ss_pred             ccccCccCCHHHHHHHHhhcc
Q 021615          255 KVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ++||+++.|++++|+.++..+
T Consensus       151 e~Sak~~~gI~e~f~~l~~~i  171 (174)
T d1wmsa_         151 ETSAKDATNVAAAFEEAVRRV  171 (174)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEcCCCCcCHHHHHHHHHHHH
Confidence            799999999999999987654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.5e-20  Score=150.40  Aligned_cols=158  Identities=19%  Similarity=0.143  Sum_probs=108.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      +||+++|.+|||||||+++|++..... .+..+........+...    +..  ..+.+||++|......       ...
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~----~~~--~~l~~~d~~~~~~~~~-------~~~   69 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVID----GET--CLLDILDTAGQEEYSA-------MRD   69 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-SCCCCSEEEEEEEEEET----TEE--EEEEEEEECCCGGGHH-------HHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC-ccCCccceeeccceeee----cee--eeeeeeeccCcccccc-------chh
Confidence            579999999999999999999875322 22222111111111111    111  2689999999976521       223


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCccccCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET  260 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa~~  260 (310)
                      ..+..++++++|+|.++..+++....|...+..+... .+.|+++|+||+|+.......++..+....  +.+.++||++
T Consensus        70 ~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~  148 (166)
T d1ctqa_          70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKT  148 (166)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC-SSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred             hhhhcccccceeecccccccHHHHHHHHHHHHHhcCC-CCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCC
Confidence            4456899999999999999999999998888765321 368999999999987543222233333333  4566799999


Q ss_pred             cCCHHHHHHHHhhcc
Q 021615          261 ELSSEDAVKSLSTEG  275 (310)
Q Consensus       261 ~~gi~~l~~~l~~~~  275 (310)
                      +.|++++|..++...
T Consensus       149 g~gi~e~f~~i~~~i  163 (166)
T d1ctqa_         149 RQGVEDAFYTLVREI  163 (166)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999986543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=2.3e-20  Score=152.67  Aligned_cols=156  Identities=17%  Similarity=0.068  Sum_probs=104.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCC--CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIA--DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~--~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      +.||+++|.+|||||||++++++.+....  +..+.+.......+...        ...+.+||++|.......      
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~------   67 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGE--------RIKIQLWDTAGQERFRKS------   67 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTE--------EEEEEEEECCCSHHHHTT------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeecc--------ceEEEEEeccCchhhccc------
Confidence            56899999999999999999997763321  12122222122112111        126899999997543211      


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCcc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKV  256 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~  256 (310)
                      ....++..+|++++|+|++++.+++.+..|+.++..+... .+.|+++|+||+|+....+ ..++..+.....  .+.++
T Consensus        68 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~  146 (165)
T d1z06a1          68 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFET  146 (165)
T ss_dssp             THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEC
T ss_pred             cceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccC-CCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEE
Confidence            1223567899999999999999999998888888765432 3689999999999865421 122223333333  45668


Q ss_pred             ccCc---cCCHHHHHHHHh
Q 021615          257 TSET---ELSSEDAVKSLS  272 (310)
Q Consensus       257 sa~~---~~gi~~l~~~l~  272 (310)
                      ||++   +.|++++|..||
T Consensus       147 SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         147 SAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             CSSSGGGGSCHHHHHHHHC
T ss_pred             ecccCCcCcCHHHHHHHhC
Confidence            9986   559999998874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.82  E-value=1.8e-20  Score=153.32  Aligned_cols=153  Identities=21%  Similarity=0.208  Sum_probs=103.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      +||+++|.+|||||||+++|.+....   ...+|.......+....        ..+.+|||||+.....       .+.
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~~~~---~~~~t~~~~~~~~~~~~--------~~~~~~D~~G~~~~~~-------~~~   64 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGEDVD---TISPTLGFNIKTLEHRG--------FKLNIWDVGGQKSLRS-------YWR   64 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTCCCS---SCCCCSSEEEEEEEETT--------EEEEEEEECCSHHHHT-------TGG
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCC---cccceEeeeeeeccccc--------cceeeeecCcchhhhh-------HHH
Confidence            57999999999999999999887532   12334433444443322        2789999999754321       223


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hc-----CCCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KI-----GCDK  255 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~-----g~~~  255 (310)
                      .++..++++++|+|+++...+.....++..+... ....+.|+++|+||+|+.+... ..+....+.  .+     .+.+
T Consensus        65 ~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~  142 (165)
T d1ksha_          65 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE-ERLAGATLLIFANKQDLPGALS-CNAIQEALELDSIRSHHWRIQG  142 (165)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEE
T ss_pred             hhhhhhhcceeeeecccchhHHHHHHhhhhhhhh-cccCCCceEEEEeccccccccC-HHHHHHHHHhhhhhcCCCEEEE
Confidence            4567899999999999877776665555444321 2235789999999999975432 222222221  11     2456


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +||++|.|+.++|++|....
T Consensus       143 ~Sa~~g~gv~e~~~~l~~~i  162 (165)
T d1ksha_         143 CSAVTGEDLLPGIDWLLDDI  162 (165)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            89999999999999986543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-20  Score=154.85  Aligned_cols=159  Identities=18%  Similarity=0.095  Sum_probs=105.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .+||+|+|.+|||||||++++++.+......|..........+....    ..  ..+.+|||+|..+....       .
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~----~~--~~~~~~d~~g~~~~~~~-------~   69 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGG----KR--VNLAIWDTAGQERFHAL-------G   69 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSS----CE--EEEEEEECCCC--------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCC----cc--ceeeeeccCCcceeccc-------c
Confidence            46899999999999999999998763322222111111222222221    11  27899999998765332       2


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCcccc
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTS  258 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~sa  258 (310)
                      ..++..+|++++|+|++++.+++.+..|++.+.....  ...|+++|+||+|+....+ ..++..+.....  .+.++||
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~--~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sa  147 (167)
T d1z08a1          70 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSA  147 (167)
T ss_dssp             CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBT
T ss_pred             hhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccc--cccceeeeccccccccccccchHHHHHHHHHcCCeEEEEec
Confidence            2346789999999999999999988888876654432  3578999999999865322 122333333333  4556899


Q ss_pred             CccCCHHHHHHHHhhcc
Q 021615          259 ETELSSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~gi~~l~~~l~~~~  275 (310)
                      +++.|++++|..|+..+
T Consensus       148 k~~~~v~e~F~~l~~~i  164 (167)
T d1z08a1         148 KQNKGIEELFLDLCKRM  164 (167)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999988765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.9e-21  Score=160.54  Aligned_cols=157  Identities=14%  Similarity=0.078  Sum_probs=105.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      +||+++|.+|||||||++++++..... .+ .+|...........  .+...  ..+.+|||||..+....       ..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~-~~-~~Ti~~~~~~~~~~--~~~~~--~~l~i~D~~g~~~~~~~-------~~   70 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFEK-KY-VATLGVEVHPLVFH--TNRGP--IKFNVWDTAGQEKFGGL-------RD   70 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-----C-CE-EEETTEEEEEEEEC--BTTCC--EEEEEEECTTHHHHSSC-------GG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCc-cc-ccceeccccccccc--ccccc--cccccccccccccccee-------cc
Confidence            589999999999999999998765221 11 12221111111111  11111  27899999998665332       12


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCccccCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET  260 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa~~  260 (310)
                      .+++.+|++++|+|++++.+++.+..|+.++..+.   .+.|+++|+||+|+....... +.......  +.+.++||++
T Consensus        71 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~~~~-~~~~~~~~~~~~~~e~Sak~  146 (170)
T d1i2ma_          71 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKS  146 (170)
T ss_dssp             GGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH---CSCCEEEEEECCCCSCSCCTT-TSHHHHSSCSSEEEEEBTTT
T ss_pred             hhcccccchhhccccccccccchhHHHHHHHhhcc---CCCceeeecchhhhhhhhhhh-HHHHHHHHcCCEEEEEeCCC
Confidence            34678999999999999999999988888877654   368999999999997643221 11222233  3456699999


Q ss_pred             cCCHHHHHHHHhhccC
Q 021615          261 ELSSEDAVKSLSTEGG  276 (310)
Q Consensus       261 ~~gi~~l~~~l~~~~~  276 (310)
                      +.|++++|..|+..+.
T Consensus       147 ~~~v~e~f~~l~~~l~  162 (170)
T d1i2ma_         147 NYNFEKPFLWLARKLI  162 (170)
T ss_dssp             TBTTTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHc
Confidence            9999999999987663

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.81  E-value=1.2e-20  Score=155.91  Aligned_cols=155  Identities=17%  Similarity=0.179  Sum_probs=104.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...||+++|.+|||||||+++|++.....   ..+|............        ..+.+||+||....       ...
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~---~~~t~~~~~~~~~~~~--------~~~~i~D~~g~~~~-------~~~   72 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYKN--------VKFNVWDVGGQDKI-------RPL   72 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEE---EEEETTEEEEEEEETT--------EEEEEEEESCCGGG-------HHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCC---ccceeeeeEEEeeccc--------eeeEEecCCCcchh-------hhH
Confidence            34679999999999999999998765211   1122222222222221        27899999998654       234


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hc-----CC
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KI-----GC  253 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~-----g~  253 (310)
                      +..++..++++++|+|+++...+.....++...... ......|+++|+||+|+.+... ..++...+.  .+     .+
T Consensus        73 ~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~-~~~~~~piiiv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~  150 (173)
T d1e0sa_          73 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYV  150 (173)
T ss_dssp             HGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEE
T ss_pred             HHhhhcccceEEEEEecccchhHHHHHHHHHHHhhh-cccccceeeeeeeccccccccc-HHHHHHHHHHHHHHhCCCEE
Confidence            455778999999999999888877776555544321 1224689999999999976422 223333322  11     24


Q ss_pred             CccccCccCCHHHHHHHHhhcc
Q 021615          254 DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .++||++|+|+.++|++|+..+
T Consensus       151 ~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         151 QPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHC
T ss_pred             EEeeCCCCcCHHHHHHHHHHhc
Confidence            4589999999999999987643

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=3.8e-21  Score=159.06  Aligned_cols=160  Identities=14%  Similarity=0.127  Sum_probs=86.4

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      .++||+++|.+|||||||+++|++........+..+.......+..+.    ..  ..+.+|||||+.++...       
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~l~i~D~~G~e~~~~~-------   71 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG----KR--IKLQIWDTAGQERFRTI-------   71 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETT----EE--EEEEEEEC----------------
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECC----EE--EEEEEEECCCchhhHHH-------
Confidence            457899999999999999999997653222222222222222333221    11  26889999998765332       


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCccc
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVT  257 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~s  257 (310)
                      ....++.||++++|+|++++.++..+..++..+.....  .+.|+++|+||+|+...... .++.......  +.+.++|
T Consensus        72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~S  149 (173)
T d2fu5c1          72 TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS  149 (173)
T ss_dssp             CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred             HHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhcc--CCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEe
Confidence            12346789999999999998888888888888865433  56899999999999764221 1222233333  4456699


Q ss_pred             cCccCCHHHHHHHHhhcc
Q 021615          258 SETELSSEDAVKSLSTEG  275 (310)
Q Consensus       258 a~~~~gi~~l~~~l~~~~  275 (310)
                      |+++.|+.++|..++...
T Consensus       150 a~~g~gv~e~f~~l~~~i  167 (173)
T d2fu5c1         150 AKANINVENAFFTLARDI  167 (173)
T ss_dssp             C---CCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999987654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.4e-20  Score=151.60  Aligned_cols=158  Identities=16%  Similarity=0.115  Sum_probs=105.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      +||+|+|.+|||||||++++++.... ..+..|........+..+.    ..+  .+.+||++|..+...    +.   .
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~-~~~~~t~~~~~~~~~~~~~----~~~--~~~~~d~~g~~~~~~----~~---~   71 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQSYFV-TDYDPTIEDSYTKQCVIDD----RAA--RLDILDTAGQEEFGA----MR---E   71 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCC-SSCCTTCCEEEEEEEEETT----EEE--EEEEEECC----CCH----HH---H
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-cccCcccccceeeeeeecc----ccc--ccccccccccccccc----cc---c
Confidence            58999999999999999999986532 2222222222222222221    112  689999999987632    22   2


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~sa~  259 (310)
                      ..+..+|++++|+|.+++.+++.+..|+.++..... ....|+++|+||+|+..... ..++..+.....+  +.++||+
T Consensus        72 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak  150 (171)
T d2erya1          72 QYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD-RDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAK  150 (171)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTT
T ss_pred             ccccccceEEEeeccccccchhhHHHHhHHHHhhcc-cCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCC
Confidence            345689999999999999999988888876654322 23689999999999865421 1233334444444  4568999


Q ss_pred             ccCCHHHHHHHHhhcc
Q 021615          260 TELSSEDAVKSLSTEG  275 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~~  275 (310)
                      ++.|++++|..++...
T Consensus       151 ~~~~i~e~f~~l~~~i  166 (171)
T d2erya1         151 IRMNVDQAFHELVRVI  166 (171)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            9999999999987653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.3e-20  Score=154.73  Aligned_cols=155  Identities=17%  Similarity=0.215  Sum_probs=103.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceee-ccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLM-PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~-~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      .||+++|.+|||||||++++++..... .+. +|.. .........    ...  ..+.+|||+|...+...       +
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~-~~~-~t~~~~~~~~~~~~----~~~--~~l~i~D~~g~~~~~~~-------~   67 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPE-VYV-PTVFENYVADIEVD----GKQ--VELALWDTAGLEDYDRL-------R   67 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCS-SCC-CCSEEEEEEEEEET----TEE--EEEEEEEECCSGGGTTT-------G
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCC-CcC-Cceeeecccccccc----ccc--eeeeccccCccchhccc-------c
Confidence            479999999999999999999875322 121 2221 111111111    111  26899999999766332       2


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-------------HHHHHH
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEE  247 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~l~~~  247 (310)
                      ..+++.+|++++|+|++++.+++.... |...+..+.   .+.|+++|+||+|+.......             ++....
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~  144 (177)
T d1kmqa_          68 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM  144 (177)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             hhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhC---CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHH
Confidence            345678999999999999888876654 444555543   368999999999997643211             112222


Q ss_pred             HHhc---CCCccccCccCCHHHHHHHHhhcc
Q 021615          248 ILKI---GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       248 l~~~---g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ....   .+.++||+++.|++++|+.+...+
T Consensus       145 a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         145 ANRIGAFGYMECSAKTKDGVREVFEMATRAA  175 (177)
T ss_dssp             HHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence            2333   456799999999999999987654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.6e-20  Score=152.85  Aligned_cols=157  Identities=15%  Similarity=0.120  Sum_probs=106.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+|+|.+|||||||+++|++.... ..+..|........+..+    +..+  .+.+|||+|..++.....       
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~~f~-~~~~~t~~~~~~~~~~~~----~~~~--~l~i~d~~g~~~~~~~~~-------   70 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEGQFV-DSYDPTIENTFTKLITVN----GQEY--HLQLVDTAGQDEYSIFPQ-------   70 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC-SCCCSSCCEEEEEEEEET----TEEE--EEEEEECCCCCTTCCCCG-------
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCC-cccCcceecccceEEecC----cEEE--Eeeecccccccccccccc-------
Confidence            47999999999999999999876532 122212111111122221    1122  688999999987644322       


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCccccC
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTSE  259 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~sa~  259 (310)
                      .++..+|++++|+|++++.+++.+..|+..+..... ..+.|+++|+||+|+....+ ..++..+...+.  .+.++||+
T Consensus        71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak  149 (167)
T d1xtqa1          71 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK  149 (167)
T ss_dssp             GGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHC-SSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred             hhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccc-ccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecC
Confidence            345689999999999999999999888887765422 13689999999999865321 122223333333  45678999


Q ss_pred             ccCCHHHHHHHHhhc
Q 021615          260 TELSSEDAVKSLSTE  274 (310)
Q Consensus       260 ~~~gi~~l~~~l~~~  274 (310)
                      ++.|++++|..+..+
T Consensus       150 ~~~~v~~~f~~li~~  164 (167)
T d1xtqa1         150 ENQTAVDVFRRIILE  164 (167)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999999988654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=6.5e-20  Score=151.08  Aligned_cols=157  Identities=17%  Similarity=0.124  Sum_probs=108.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      +||+++|.+|||||||++++.+.+... .+..|........+..+.    ..  ..+.+||++|..+...    +.   .
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~~~~~~-~~~~t~~~~~~~~~~~~~----~~--~~~~i~d~~g~~~~~~----~~---~   70 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQKIFVP-DYDPTIEDSYLKHTEIDN----QW--AILDVLDTAGQEEFSA----MR---E   70 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCCT-TCCTTCCEEEEEEEEETT----EE--EEEEEEECCSCGGGCS----SH---H
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCc-ccCcceeecccccccccc----cc--cccccccccccccccc----ch---h
Confidence            689999999999999999999865322 222221111111222111    11  2789999999977643    22   3


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~sa  258 (310)
                      .+++.+|++++|+|++++.+++.+..|+.++..+.. ..+.|+++|+||+|+....    +...++.+.+ .+.+.++||
T Consensus        71 ~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~-~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~-~~~~~e~Sa  148 (169)
T d1x1ra1          71 QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKVTRDQGKEMATKY-NIPYIETSA  148 (169)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-TCCEEEEBC
T ss_pred             hhhhhccEEEEecccccchhhhccchhhHHHHhhcc-ccCccEEEEecccchhhhceeehhhHHHHHHHc-CCEEEEEcC
Confidence            455689999999999999999999999888765532 2468999999999987642    2233444333 245667999


Q ss_pred             CccC-CHHHHHHHHhhcc
Q 021615          259 ETEL-SSEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~-gi~~l~~~l~~~~  275 (310)
                      +++. |++++|..++...
T Consensus       149 k~~~~nV~~~F~~l~~~i  166 (169)
T d1x1ra1         149 KDPPLNVDKTFHDLVRVI  166 (169)
T ss_dssp             SSSCBSHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHH
Confidence            9875 9999999987643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.7e-20  Score=151.30  Aligned_cols=158  Identities=19%  Similarity=0.202  Sum_probs=105.3

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccce--EeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~--~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      ..+||+++|.+|||||||++++++.+.....++ +|......  .+....    .  ...+.+|||||+.+...      
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~--~~~l~i~Dt~G~e~~~~------   71 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI-STVGIDFRNKVLDVDG----V--KVKLQMWDTAGQERFRS------   71 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCC-CCCSCEEEEEEEEETT----E--EEEEEEEECCCC-----------
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCccccc-ceeeeeeEEEEEEecC----c--EEEEEEEECCCchhhHH------
Confidence            457899999999999999999988763322222 22211112  222211    1  12689999999876522      


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCC
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCD  254 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~  254 (310)
                       .+..++..+|++++|+|.++..++.....++..+.....  ...|+++|+||+|.....    +....+.+.+ .+.+.
T Consensus        72 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~-~~~~~  147 (170)
T d2g6ba1          72 -VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKREDGEKLAKEY-GLPFM  147 (170)
T ss_dssp             ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-TCCEE
T ss_pred             -HHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccC--CCceEEEEEeeechhhcccccHHHHHHHHHHc-CCEEE
Confidence             222346789999999999998888888888777665443  367999999999987642    2223333322 34566


Q ss_pred             ccccCccCCHHHHHHHHhhcc
Q 021615          255 KVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ++||+++.|++++|..+++..
T Consensus       148 e~Sak~g~gi~e~f~~l~~~i  168 (170)
T d2g6ba1         148 ETSAKTGLNVDLAFTAIAKEL  168 (170)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEeCCCCcCHHHHHHHHHHHc
Confidence            799999999999999987643

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=3.7e-19  Score=149.50  Aligned_cols=157  Identities=18%  Similarity=0.216  Sum_probs=100.4

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCC--CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC----
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKP--DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----  174 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~--~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~----  174 (310)
                      .+++|+|+|+||||||||+|+|++.+.  ..+.++++|.......+.           ..+.++|++|........    
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~~~d~~~~~~~~~~~~~~~   90 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-----------DELHFVDVPGYGFAKVSKSERE   90 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-----------TTEEEEECCCBCCCSSCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccc-----------ccceEEEEEeeccccccccccc
Confidence            356899999999999999999998764  336777777665444432           157889998875432211    


Q ss_pred             --chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---HHHHHHHHH
Q 021615          175 --KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEIL  249 (310)
Q Consensus       175 --~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~l~~~l~  249 (310)
                        ..+...+..++..+|++++|+|++.+...++ ..+.+.+..     .++|+++|+||+|+....+.   .+.+.+.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~-----~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~  164 (195)
T d1svia_          91 AWGRMIETYITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN  164 (195)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT
T ss_pred             hhhhHHhhhhccccchhhhhhhhhccccccccc-ccccccccc-----ccCcceechhhccccCHHHHHHHHHHHHHHhc
Confidence              1222344456677899999999987655444 445566766     37899999999998765332   222333332


Q ss_pred             hc---CCCccccCccCCHHHHHHHHhhc
Q 021615          250 KI---GCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       250 ~~---g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                      ..   .+..+||+++.|++++++.+...
T Consensus       165 ~~~~~~~~~~SA~~~~gi~el~~~i~~~  192 (195)
T d1svia_         165 IDPEDELILFSSETKKGKDEAWGAIKKM  192 (195)
T ss_dssp             CCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence            11   23448999999999999987654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.7e-20  Score=151.77  Aligned_cols=153  Identities=11%  Similarity=0.134  Sum_probs=107.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||++++++.+...  +..++.......+..+.    ..+  .+.+|||+|....            
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~t~~~~~~~~i~v~~----~~~--~l~i~Dt~g~~~~------------   65 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDG----QTH--LVLIREEAGAPDA------------   65 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHSCCCC--CCCSSCEEEEEEEEETT----EEE--EEEEEECSSCCCH------------
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCC--cCCccceeEEEEeecCc----eEE--EEEEeeccccccc------------
Confidence            589999999999999999999887433  22222222222222221    112  6899999998643            


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCcH------hHHHHHHHHHHhcCCCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEAR------DRLQSLTEEILKIGCDK  255 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~-~~~~p~ivv~NK~Dl~~~~------~~~~~l~~~l~~~g~~~  255 (310)
                      .+++.+|++++|+|+++..+++.+..|..++..+... ....|+++|+||.|+....      +..+.+......+.+.+
T Consensus        66 ~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e  145 (175)
T d2bmja1          66 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYE  145 (175)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEE
T ss_pred             ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEE
Confidence            2355799999999999999999998898888765432 2456899999998875421      12233333333445677


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +||+++.|++++|..++..+
T Consensus       146 ~SAk~~~~v~~~F~~l~~~i  165 (175)
T d2bmja1         146 TCATYGLNVDRVFQEVAQKV  165 (175)
T ss_dssp             EBTTTTBTHHHHHHHHHHHH
T ss_pred             eCCCCCcCHHHHHHHHHHHH
Confidence            89999999999999987765

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=1.1e-20  Score=171.39  Aligned_cols=112  Identities=39%  Similarity=0.703  Sum_probs=61.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCC---------CCCCccC-------CCceEEEeCCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDP---------TLGAEKY-------SSEATLADLPG  166 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~---------~~~~~~~-------~~~~~i~DtPG  166 (310)
                      +||||||.||||||||+|+|++.++.+++|||||++|+.|.+...+         ......+       ...+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            4799999999999999999999999999999999999999753100         0000000       12589999999


Q ss_pred             CCccccCCchHHHHHHHHhhhcCEEEEecccCC-----------CCcHHHHHHHHHHHH
Q 021615          167 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-----------ENPVNDYRTVKEELR  214 (310)
Q Consensus       167 ~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~-----------~~~~~~~~~~~~~l~  214 (310)
                      ++++++.+.+++.+|+.++++||++++|+|++.           .++.++++.+..++.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~~~d~~~~~~~~~dp~~d~~~i~~eL~  139 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREID  139 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHH
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccccccccccccccccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999874           245667666666654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.6e-20  Score=150.45  Aligned_cols=159  Identities=16%  Similarity=0.070  Sum_probs=107.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee-eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH-
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR-  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~-~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~-  179 (310)
                      .+||+++|.+|+|||||++++++........+.||. +.....+..+.    .  ...+.+||+||...       ..+ 
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~~~d~~~~~g-------~e~~   69 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDG----E--SATIILLDMWENKG-------ENEW   69 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETT----E--EEEEEEECCTTTTH-------HHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCC----c--eeeeeeeccccccc-------cccc
Confidence            468999999999999999999987755433333332 22222332221    1  12678999886421       111 


Q ss_pred             HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCc
Q 021615          180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDK  255 (310)
Q Consensus       180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~  255 (310)
                      ....+++.+|++++|+|+++..+++.+..|..++..... ..+.|+++|+||+|+....    +..+.+...+ .+.+.+
T Consensus        70 ~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e  147 (172)
T d2g3ya1          70 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSEGRACAVVF-DCKFIE  147 (172)
T ss_dssp             HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEE
T ss_pred             cccccccccceeeeeecccccchhhhhhhhhhhhhhccc-cCCceEEEEeccccccccccccHHHHHHHHHHc-CCeEEE
Confidence            112346789999999999999999988888888875422 2368999999999986532    2223333222 345666


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +||+++.|++++|..++...
T Consensus       148 ~Sak~g~~i~~~f~~l~~~i  167 (172)
T d2g3ya1         148 TSAAVQHNVKELFEGIVRQV  167 (172)
T ss_dssp             CBTTTTBSHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHH
Confidence            99999999999999987654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.80  E-value=1.8e-20  Score=156.03  Aligned_cols=154  Identities=16%  Similarity=0.123  Sum_probs=101.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      ..||+++|.+|||||||+++|.+.....   ..+|.......+....        ..+.+|||||.......       +
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~~~~~~---~~~t~~~~~~~~~~~~--------~~~~i~D~~g~~~~~~~-------~   78 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQIGEVVT---TKPTIGFNVETLSYKN--------LKLNVWDLGGQTSIRPY-------W   78 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCSEEEE---ECSSTTCCEEEEEETT--------EEEEEEEEC----CCTT-------G
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCc---cccccceEEEEEeeCC--------EEEEEEecccccccchh-------H
Confidence            4689999999999999999998765321   1123222233333221        27899999999765332       2


Q ss_pred             HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-----h--cCCC
Q 021615          182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGCD  254 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-----~--~g~~  254 (310)
                      ..++..+|++++|+|+++..++.....++..+... ....+.|+++|+||+|+.+... ..++.+.+.     .  ..+.
T Consensus        79 ~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~-~~~~~~piliv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~  156 (182)
T d1moza_          79 RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE-EELQDAALLVFANKQDQPGALS-ASEVSKELNLVELKDRSWSIV  156 (182)
T ss_dssp             GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTS-STTSSCEEEEEEECTTSTTCCC-HHHHHHHTTTTTCCSSCEEEE
T ss_pred             HhhhccceeEEEEeeecccccchhHHHHHHHHHHh-hccCCcceEEEEEeeccccccC-HHHHHHHHHHHHHhhCCCEEE
Confidence            23456899999999999988887776665544322 2335689999999999976422 233333332     1  1245


Q ss_pred             ccccCccCCHHHHHHHHhhcc
Q 021615          255 KVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       255 ~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      ++||++++|++++|++|....
T Consensus       157 e~SA~~g~gv~e~~~~l~~~i  177 (182)
T d1moza_         157 ASSAIKGEGITEGLDWLIDVI  177 (182)
T ss_dssp             EEBGGGTBTHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999987654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=2.6e-19  Score=147.23  Aligned_cols=157  Identities=18%  Similarity=0.119  Sum_probs=107.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||++++++.+......+..........+....    ..  ..+.+|||+|..+...    +.   .
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~----~~--~~l~i~d~~g~~~~~~----~~---~   70 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE----HT--VKFEIWDTAGQERFAS----LA---P   70 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT----EE--EEEEEEEECCSGGGGG----GH---H
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeecccccccc----cc--ccccccccCCchhHHH----HH---H
Confidence            5899999999999999999998763321111111111111222111    11  2789999999876532    22   2


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc-------HhHHHHHHHHHHhcCCCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-------RDRLQSLTEEILKIGCDK  255 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~-------~~~~~~l~~~l~~~g~~~  255 (310)
                      .++..+|++++|+|.+++.+++....|+.++..+..  ...|+++|+||+|+.+.       .+....+.+.. .+.+.+
T Consensus        71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~-~~~~~e  147 (170)
T d1ek0a_          71 MYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEK-GLLFFE  147 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH-TCEEEE
T ss_pred             HHHhccceEEEEEeCCcccchhhhhhhhhhhccccc--cccceeeeecccccccccchhhhhHHHHHHHHHHc-CCEEEE
Confidence            456789999999999999999999888877766543  46799999999997532       12223333222 234567


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +||+++.|++++|..+++..
T Consensus       148 ~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         148 TSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             CCTTTCTTHHHHHHHHHTTS
T ss_pred             ecCCCCcCHHHHHHHHHHHh
Confidence            99999999999999987765

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.5e-20  Score=152.35  Aligned_cols=167  Identities=17%  Similarity=0.098  Sum_probs=106.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC----CCCccCCCceEEEeCCCCCccccCCch
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT----LGAEKYSSEATLADLPGLIEGAHLGKG  176 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~----~~~~~~~~~~~i~DtPG~~~~~~~~~~  176 (310)
                      .+.||+++|.+|||||||+++|++.+......+..+.......+..+..    .........+.+|||||+.++      
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~------   77 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF------   77 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH------
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhh------
Confidence            3578999999999999999999987532211111111111111211100    000011136899999998654      


Q ss_pred             HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CC
Q 021615          177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GC  253 (310)
Q Consensus       177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~  253 (310)
                       ...+..+++.||++++|+|+++..+++.+..|..++..+. .....|+++|+||+|+....+. .++..+.....  .+
T Consensus        78 -~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~  155 (186)
T d2f7sa1          78 -RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA-YCENPDIVLIGNKADLPDQREVNERQARELADKYGIPY  155 (186)
T ss_dssp             -HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC-TTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCE
T ss_pred             -HHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhc-cCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEE
Confidence             2223334678999999999999888888777776655432 2235789999999999654221 12233333444  45


Q ss_pred             CccccCccCCHHHHHHHHhhcc
Q 021615          254 DKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       254 ~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .++||+++.|++++|+.+....
T Consensus       156 ~e~Sak~~~~i~e~f~~l~~~i  177 (186)
T d2f7sa1         156 FETSAATGQNVEKAVETLLDLI  177 (186)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHH
Confidence            6799999999999999987754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.9e-19  Score=151.14  Aligned_cols=158  Identities=16%  Similarity=0.150  Sum_probs=106.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||++++++.+.. .++..|............    +..  ..+.+|||+|..++...       ..
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~f~-~~~~~t~~~~~~~~~~~~----~~~--~~l~i~D~~g~~~~~~~-------~~   69 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIG----GEP--YTLGLFDTAGQEDYDRL-------RP   69 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEET----TEE--EEEEEEEECCSGGGTTT-------GG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCC-CCcCCceeeecceeEeeC----Cce--eeeeccccccchhhhhh-------hh
Confidence            58999999999999999999977532 222222211111111111    111  26899999999876432       22


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----------------HHHHHH
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARD----------------RLQSLT  245 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----------------~~~~l~  245 (310)
                      .++..+|++++|+|++++.+++.+.. |...+..+.   .+.|+++|+||+|+.....                ....+.
T Consensus        70 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~---~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  146 (191)
T d2ngra_          70 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLA  146 (191)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred             hcccccceeecccccchHHHHHHHHHHHHHHHhhcC---CCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHH
Confidence            44678999999999999999888864 455555543   3689999999999865322                122233


Q ss_pred             HHHHhcCCCccccCccCCHHHHHHHHhhccCC
Q 021615          246 EEILKIGCDKVTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       246 ~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      ..+....+.++||+++.|++++|+.+.....+
T Consensus       147 ~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         147 RDLKAVKYVECSALTQKGLKNVFDEAILAALE  178 (191)
T ss_dssp             HHTTCSCEEECCTTTCTTHHHHHHHHHHHHTS
T ss_pred             HHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhc
Confidence            33333456779999999999999988766544

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2e-19  Score=147.82  Aligned_cols=156  Identities=19%  Similarity=0.159  Sum_probs=103.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||++++++.... ..+..|.-......+..+    +..+  .+.+|||+|.....        ...
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~f~-~~~~pTi~~~~~~~~~~~----~~~~--~l~i~D~~g~~~~~--------~~~   67 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKRFI-WEYDPTLESTYRHQATID----DEVV--SMEILDTAGQEDTI--------QRE   67 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEET----TEEE--EEEEEECCCCCCCH--------HHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCC-CccCCceecccccccccc----ccce--EEEEeecccccccc--------cch
Confidence            47999999999999999999986522 222222111111111111    1112  78999999986542        122


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcccc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS  258 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~sa  258 (310)
                      .++..+|++++|+|.+++.++..+..|+..+..... ..+.|+++|+||+|+....    +....+.+.+ .+.+.++||
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~-~~~~~e~Sa  145 (168)
T d2atva1          68 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEEGEKLATEL-ACAFYECSA  145 (168)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TSEEEECCT
T ss_pred             hhhcccccceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhhhccCcHHHHHHHHHHh-CCeEEEEcc
Confidence            345689999999999998888888776655443221 2468999999999986432    2233444333 234566899


Q ss_pred             CccCC-HHHHHHHHhhcc
Q 021615          259 ETELS-SEDAVKSLSTEG  275 (310)
Q Consensus       259 ~~~~g-i~~l~~~l~~~~  275 (310)
                      +++.| ++++|..++...
T Consensus       146 ktg~gnV~e~F~~l~~~i  163 (168)
T d2atva1         146 CTGEGNITEIFYELCREV  163 (168)
T ss_dssp             TTCTTCHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHH
Confidence            99985 999999887644

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-19  Score=151.25  Aligned_cols=157  Identities=18%  Similarity=0.138  Sum_probs=106.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+|+|.+|||||||+++|+..+.. ..+..|........+..+.    ..  ..+.+||++|...+...       ..
T Consensus         6 iKivviG~~~vGKTsli~~~~~~~f~-~~~~~ti~~~~~~~~~~~~----~~--~~~~~~d~~g~~~~~~~-------~~   71 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDG----KP--VNLGLWDTAGQEDYDRL-------RP   71 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETT----EE--EEEEEECCCCSGGGTTT-------GG
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCC-cccccceeeceeeeeeccC----cc--eEEEeecccccccchhh-------hh
Confidence            57999999999999999999987522 2222222211112222111    11  26889999998766332       12


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH----------------HHHH
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDRL----------------QSLT  245 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~----------------~~l~  245 (310)
                      .++..+|++++|+|+++..+++.+.. |...+..+.   .+.|+++|+||+|+.......                ..+.
T Consensus        72 ~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a  148 (183)
T d1mh1a_          72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA  148 (183)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             hcccccceeeeeeccchHHHHHHHHHHHHHHHHHhC---CCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHH
Confidence            34678999999999999888887754 555555543   368999999999986543221                1222


Q ss_pred             HHHHhcCCCccccCccCCHHHHHHHHhhccC
Q 021615          246 EEILKIGCDKVTSETELSSEDAVKSLSTEGG  276 (310)
Q Consensus       246 ~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~~  276 (310)
                      +.+..+.+.++||+++.|++++|..+.....
T Consensus       149 ~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         149 KEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             HHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             HHcCCceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence            2222345677999999999999999877654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.78  E-value=4.3e-19  Score=143.19  Aligned_cols=152  Identities=20%  Similarity=0.205  Sum_probs=104.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||+++|++.+.... ++.+  ...........        ..+.+||+||....       .....
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~-~~~~--~~~~~~~~~~~--------~~~~~~d~~g~~~~-------~~~~~   62 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTI--GFNVETVEYKN--------ISFTVWDVGGQDKI-------RPLWR   62 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCC-CCCS--SCCEEEEECSS--------CEEEEEECCCCGGG-------HHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcc-ccce--eeEEEEEeeee--------EEEEEecCCCcccc-------hhhhh
Confidence            4799999999999999999998763221 1111  11112222222        27899999998654       23455


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-----hc--CCCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----KI--GCDK  255 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-----~~--g~~~  255 (310)
                      .++..++++++++|..+...+.....++.++.... .....|+++++||+|+.+.... .++.....     ..  .+.+
T Consensus        63 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~k~d~~~~~~~-~~i~~~~~~~~~~~~~~~~~~  140 (160)
T d1r8sa_          63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRHRNWYIQA  140 (160)
T ss_dssp             HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCCH-HHHHHHTTGGGCSSCCEEEEE
T ss_pred             hhhccceeEEEEEEecChHHHHHHHHHHHHHHHhh-cccCceEEEEeecccccccccH-HHHHHHHHHHHHhhCCCEEEE
Confidence            66789999999999999888877776766665422 2246899999999999865332 22222211     11  2445


Q ss_pred             cccCccCCHHHHHHHHhhc
Q 021615          256 VTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~  274 (310)
                      +||++|.|++++|++|+.+
T Consensus       141 ~SAktg~gi~e~~~~l~~~  159 (160)
T d1r8sa_         141 TCATSGDGLYEGLDWLSNQ  159 (160)
T ss_dssp             CBTTTTBTHHHHHHHHHHH
T ss_pred             eECCCCCCHHHHHHHHHhc
Confidence            8999999999999998764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=7.2e-19  Score=146.17  Aligned_cols=156  Identities=15%  Similarity=0.141  Sum_probs=104.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||+++++..+.. ..+..|........+..+    +..+  .+.+||++|........       .
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~-~~~~~t~~~~~~~~~~~~----~~~~--~~~i~D~~g~~~~~~~~-------~   68 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEID----TQRI--ELSLWDTSGSPYYDNVR-------P   68 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECS----SCEE--EEEEEEECCSGGGTTTG-------G
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCC-CccCCceeeccccccccc----ceEE--eeccccccccccccccc-------c
Confidence            57999999999999999999987532 222222112222222221    1122  68899999987653321       2


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHH-HHHHHhcCCCCCCCCEEEEEeCCCCCCcH----------------hHHHHHH
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTV-KEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRLQSLT  245 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~-~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----------------~~~~~l~  245 (310)
                      .+++.+|++++|+|++++.+++....+ ...+..+.   .+.|+++|+||+|+....                +....+.
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~---~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a  145 (179)
T d1m7ba_          69 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA  145 (179)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred             chhhhhhhhheeeecccCCCHHHHHHHHHHHHhccC---CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHH
Confidence            346789999999999998888876554 44455544   368999999999986421                1233344


Q ss_pred             HHHHhcCCCccccCccC-CHHHHHHHHhhcc
Q 021615          246 EEILKIGCDKVTSETEL-SSEDAVKSLSTEG  275 (310)
Q Consensus       246 ~~l~~~g~~~~sa~~~~-gi~~l~~~l~~~~  275 (310)
                      +.+....+.++||+++. |++++|+.+...+
T Consensus       146 ~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~  176 (179)
T d1m7ba_         146 KQIGAATYIECSALQSENSVRDIFHVATLAC  176 (179)
T ss_dssp             HHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             HHhCCCeEEEEeCCCCCcCHHHHHHHHHHHH
Confidence            44334457779999998 5999999876544

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.75  E-value=2e-18  Score=148.96  Aligned_cols=121  Identities=22%  Similarity=0.176  Sum_probs=77.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCC--------C--CCCCccCCCceEEEeCCCCCcccc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD--------P--TLGAEKYSSEATLADLPGLIEGAH  172 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~--------~--~~~~~~~~~~~~i~DtPG~~~~~~  172 (310)
                      +.|+|+|.+|+|||||+|+|++....+.....+|.......+..+        .  ......-..++.++||||+.++..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~   85 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT   85 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence            449999999999999999999765433333333332222111100        0  000000123789999999977643


Q ss_pred             CCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615          173 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  236 (310)
Q Consensus       173 ~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  236 (310)
                      .       ....+..||++++|+|+..+...++.. ++..+..     .++|+++|+||+|+..
T Consensus        86 ~-------~~~~~~~~D~~ilVvda~~g~~~~~~~-~~~~~~~-----~~~p~iivlNK~D~~~  136 (227)
T d1g7sa4          86 L-------RKRGGALADLAILIVDINEGFKPQTQE-ALNILRM-----YRTPFVVAANKIDRIH  136 (227)
T ss_dssp             S-------BCSSSBSCSEEEEEEETTTCCCHHHHH-HHHHHHH-----TTCCEEEEEECGGGST
T ss_pred             c-------chhcccccceEEEEEecccCcccchhH-HHHHhhc-----CCCeEEEEEECccCCC
Confidence            2       123456799999999999876666644 4455655     4789999999999865

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.72  E-value=8.8e-18  Score=138.14  Aligned_cols=155  Identities=15%  Similarity=0.123  Sum_probs=101.3

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      +..+||+|+|.+|||||||+++|.+.+... ......    ........        ...+.++|++|......      
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~----~~~~~~~~--------~~~~~~~d~~~~~~~~~------   74 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGS----NVEEIVIN--------NTRFLMWDIGGQESLRS------   74 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCS----SCEEEEET--------TEEEEEEECCC----CG------
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccce----eEEEEeec--------ceEEEEecccccccccc------
Confidence            344789999999999999999999876322 111111    11111111        12789999999865422      


Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------c
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------I  251 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~  251 (310)
                       .+..++..++++++|+|.++...+............. ......|+++|+||+|+..... ..++.+.+..       .
T Consensus        75 -~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~  151 (177)
T d1zj6a1          75 -SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH-EDLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQW  151 (177)
T ss_dssp             -GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTS-GGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCE
T ss_pred             -chhhhhccceeeeeecccccccchhhhhhhhhhhhhc-ccccceEEEEEEEcccccccCc-HHHHHHHHHHHhhHhcCC
Confidence             2345567899999999999988777655444433322 2234789999999999976532 2334433321       1


Q ss_pred             CCCccccCccCCHHHHHHHHhhcc
Q 021615          252 GCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       252 g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                      .+.++||++|+|+++++++|++.+
T Consensus       152 ~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         152 HIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHh
Confidence            255589999999999999987653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=5.2e-17  Score=130.75  Aligned_cols=150  Identities=23%  Similarity=0.246  Sum_probs=102.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      ||+++|+||||||||+|+|++.+...   ..+|.......+....        ..+.++|++|......       ....
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~---~~~t~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-------~~~~   63 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT---LQPTWHPTSEELAIGN--------IKFTTFDLGGHIQARR-------LWKD   63 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC---CCCCCSCEEEEECCTT--------CCEEEEECCCSGGGGG-------GGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe---eeceeeEeEEEeccCC--------eeEEEEeeccchhhhh-------hHhh
Confidence            69999999999999999999987432   1122222223333222        2789999999865532       2234


Q ss_pred             HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------------
Q 021615          184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------------  250 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------------  250 (310)
                      +...++++++++|.++.........++....... ...+.|+++++||.|+..... ..++.+.+..             
T Consensus        64 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~~~k~d~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~  141 (166)
T d2qtvb1          64 YFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPNAVS-EAELRSALGLLNTTGSQRIEGQR  141 (166)
T ss_dssp             GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCT-TTTTCCEEEEEECTTSSSCCC-HHHHHHHHTCSSCCC---CCSSC
T ss_pred             hhhheeeeeeeccccchhhhhhhhHHHHhhhhhh-ccCCceEEEEeccccccccCC-HHHHHHHhhhhhhhHHHhhcccC
Confidence            4567999999999998777766666655555433 335789999999999976422 2333333321             


Q ss_pred             -cCCCccccCccCCHHHHHHHHhh
Q 021615          251 -IGCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       251 -~g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                       ..+.++||++|+|+.++|++|++
T Consensus       142 ~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         142 PVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             CEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             CCEEEEeeCCCCCCHHHHHHHHhC
Confidence             12345799999999999999874

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.69  E-value=5.1e-17  Score=136.62  Aligned_cols=160  Identities=19%  Similarity=0.166  Sum_probs=98.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEe-----------eCCCCCCCccC----CCceEEEeC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRL-----------DGDPTLGAEKY----SSEATLADL  164 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v-----------~~~~~~~~~~~----~~~~~i~Dt  164 (310)
                      .+|+++|..++|||||+++|++.....   ....+.|........           ..........+    ...+.++||
T Consensus         6 inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDt   85 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA   85 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred             EEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeecc
Confidence            379999999999999999999854322   112222321111100           00000000000    125899999


Q ss_pred             CCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---H
Q 021615          165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---L  241 (310)
Q Consensus       165 PG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~  241 (310)
                      ||+.++       .....+.+..+|++++|+|+..+...++....+..+...    ...++++++||+|+.+....   .
T Consensus        86 PGh~~f-------~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~----~~~~iiv~inK~D~~d~~~~~~~~  154 (195)
T d1kk1a3          86 PGHEAL-------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII----GQKNIIIAQNKIELVDKEKALENY  154 (195)
T ss_dssp             SSHHHH-------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH----TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             chhhhh-------hHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh----cCccceeeeecccchhhHHHHHHH
Confidence            998543       445566678899999999999865444333333344442    12457889999999876432   3


Q ss_pred             HHHHHHHHhcC-----CCccccCccCCHHHHHHHHhh
Q 021615          242 QSLTEEILKIG-----CDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       242 ~~l~~~l~~~g-----~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      +.+.+.+...+     +.++||++|.|++++++.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~  191 (195)
T d1kk1a3         155 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIED  191 (195)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34444444332     345899999999999988644

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=7.4e-17  Score=136.02  Aligned_cols=119  Identities=20%  Similarity=0.223  Sum_probs=80.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      -|+|+|+|+||||||||+|+|++.+.    .++||.....+.+...        +..+.+|||||+....   ......+
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~----~~~tt~~~~~~~~~~~--------~~~~~l~D~~g~~~~~---~~~~~~~   67 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYD--------GSGVTLVDFPGHVKLR---YKLSDYL   67 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSC----CCBCCCSSCEEETTGG--------GSSCEEEECCCCGGGT---HHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEecceEEEEEeC--------CeEEEEEecccccchh---hHHHHHH
Confidence            36899999999999999999998764    2455555554444332        2378999999987542   2334455


Q ss_pred             HHHhhhcCEEEEecccCC-CCcHHHHHHH----HHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          182 LRHLRRTRLLVHVIDAAA-ENPVNDYRTV----KEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~-~~~~~~~~~~----~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      ...+..++.+++++|+.. ....++...+    ...+.....  .+.|+++|+||+|+...
T Consensus        68 ~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          68 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCE--NGIDILIACNKSELFTA  126 (209)
T ss_dssp             HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHST--TCCCEEEEEECTTSTTC
T ss_pred             HHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHh--ccCCeEEEEEeeccccc
Confidence            566778899999999875 3333333222    222222222  47899999999999764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=6.3e-17  Score=133.25  Aligned_cols=158  Identities=22%  Similarity=0.289  Sum_probs=102.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH-
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL-  182 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~-  182 (310)
                      .|+|+|.||||||||+|+|++.+..+...+++|..+....+.....       ..+.++|+||......  .+....+. 
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~~~~   77 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-------YQAIYVDTPGLHMEEK--RAINRLMNK   77 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT-------EEEEEESSSSCCHHHH--HHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC-------ceeEeecCCCceecch--hhhhhhhhh
Confidence            4899999999999999999998877655555555554443322211       2577899999865322  11111111 


Q ss_pred             ---HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHH-HhcCC---Cc
Q 021615          183 ---RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-LKIGC---DK  255 (310)
Q Consensus       183 ---~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l-~~~g~---~~  255 (310)
                         .....+++++++.|.....  .....+...+..     ...|.++|+||+|............+.+ ..++.   ..
T Consensus        78 ~~~~~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~-----~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (179)
T d1egaa1          78 AASSSIGDVELVIFVVEGTRWT--PDDEMVLNKLRE-----GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVP  150 (179)
T ss_dssp             CTTSCCCCEEEEEEEEETTCCC--HHHHHHHHHHHS-----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred             ccccchhhcceeEEEEecCccc--hhHHHHHHHhhh-----ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEE
Confidence               1124567888888877533  333444455554     3578999999999887654333333333 34443   34


Q ss_pred             cccCccCCHHHHHHHHhhccCC
Q 021615          256 VTSETELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~~~  277 (310)
                      +||+++.|++++++.+...+-+
T Consensus       151 vSA~~g~gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         151 ISAETGLNVDTIAAIVRKHLPE  172 (179)
T ss_dssp             CCTTTTTTHHHHHHHHHTTCCB
T ss_pred             EeCcCCCCHHHHHHHHHHhCCC
Confidence            8999999999999998776633

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=9.1e-17  Score=136.25  Aligned_cols=131  Identities=20%  Similarity=0.243  Sum_probs=88.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC---C---CCCC-----CC------CCceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA---K---PDIA-----DY------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP  165 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~---~---~~i~-----~~------~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP  165 (310)
                      .+|+++|.+++|||||+++|+..   .   ..+.     ++      .+.|.+.....+....        .++.++|||
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--------~~i~iiDtP   75 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--------RHYSHVDCP   75 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--------CEEEEEECC
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--------eEEEEEeCC
Confidence            47999999999999999999732   1   1111     01      1445544444444332        379999999


Q ss_pred             CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHHHHH
Q 021615          166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQSL  244 (310)
Q Consensus       166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~l  244 (310)
                      |+.++       .....+.+..||++|+|+|+.++...++.+.| ..+..     .+.| +++++||+|+.+..+..+++
T Consensus        76 Gh~df-------~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~-----~gi~~iiv~iNK~D~~~~~~~~~~~  142 (204)
T d2c78a3          76 GHADY-------IKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ-----VGVPYIVVFMNKVDMVDDPELLDLV  142 (204)
T ss_dssp             CSGGG-------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHH-----TTCCCEEEEEECGGGCCCHHHHHHH
T ss_pred             Cchhh-------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEEecccCCCHHHHHHH
Confidence            99765       34566788899999999999998877775544 44444     3555 67789999998765544444


Q ss_pred             ----HHHHHhcCCC
Q 021615          245 ----TEEILKIGCD  254 (310)
Q Consensus       245 ----~~~l~~~g~~  254 (310)
                          ...+...++.
T Consensus       143 ~~~i~~~l~~~~~~  156 (204)
T d2c78a3         143 EMEVRDLLNQYEFP  156 (204)
T ss_dssp             HHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhcCCC
Confidence                4444445543

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=8.2e-17  Score=136.16  Aligned_cols=120  Identities=23%  Similarity=0.188  Sum_probs=78.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  183 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~  183 (310)
                      +|+++|++|||||||+|+|++.+....   .+|..++...+.....     ....+.+||+||+...      ....+..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~---~~t~~~~~~~~~~~~~-----~~~~~~~~d~~g~~~~------~~~~~~~   67 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT---QTSITDSSAIYKVNNN-----RGNSLTLIDLPGHESL------RFQLLDR   67 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB---CCCCSCEEEEEECSST-----TCCEEEEEECCCCHHH------HHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc---cCCeeEEEEEEEEeee-----eeeeeeeeeccccccc------cchhhhh
Confidence            699999999999999999998775442   2344444455543211     1226899999998532      1223345


Q ss_pred             HhhhcCEEEEecccCCCCc-HHH-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          184 HLRRTRLLVHVIDAAAENP-VND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       184 ~l~~~d~il~VvD~s~~~~-~~~-~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      ++..++.+++|+|+++... ..+ .+.+.+.+..........|+++|+||+|+..+
T Consensus        68 ~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          68 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             hhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            5688999999999987433 222 23333333322222235799999999999864

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.67  E-value=1.5e-16  Score=134.09  Aligned_cols=131  Identities=19%  Similarity=0.163  Sum_probs=87.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCC----------------CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAK----------------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG  166 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~----------------~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG  166 (310)
                      .+|+++|..++|||||+++|++.-                .......+.|.......+....        ..+.++||||
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~--------~~~~~iDtPG   75 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--------RHYAHTDCPG   75 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--------CEEEEEECSS
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece--------eeEEeecCcc
Confidence            469999999999999999998521                0011122345544333333322        3799999999


Q ss_pred             CCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHH----
Q 021615          167 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ----  242 (310)
Q Consensus       167 ~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~----  242 (310)
                      +.++       .....+.+..+|++++|+|+.++...++.+.+ ..+..+    ..+|+|+++||+|+....+..+    
T Consensus        76 h~~f-------~~~~~~~~~~aD~allVVda~~G~~~QT~~~~-~~a~~~----~~~~iIv~iNK~D~~~~~~~~~~i~~  143 (196)
T d1d2ea3          76 HADY-------VKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI----GVEHVVVYVNKADAVQDSEMVELVEL  143 (196)
T ss_dssp             HHHH-------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT----TCCCEEEEEECGGGCSCHHHHHHHHH
T ss_pred             hHHH-------HHHHHHHHhhcCeEEEEEEcCCCCchhHHHHH-HHHHHh----cCCcEEEEEecccccccHHHHHHHHH
Confidence            8654       44556778889999999999987766655444 344443    2468899999999986544443    


Q ss_pred             HHHHHHHhcCC
Q 021615          243 SLTEEILKIGC  253 (310)
Q Consensus       243 ~l~~~l~~~g~  253 (310)
                      ++.+.+..+++
T Consensus       144 ~i~~~l~~~~~  154 (196)
T d1d2ea3         144 EIRELLTEFGY  154 (196)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHhCC
Confidence            34445555554

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.67  E-value=3.9e-16  Score=132.25  Aligned_cols=161  Identities=19%  Similarity=0.191  Sum_probs=95.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCC-CCc--e-----eeccceEeeC----------CCCC-----CCccCCCce
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADY-PFT--T-----LMPNLGRLDG----------DPTL-----GAEKYSSEA  159 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~-~~t--T-----~~~~~~~v~~----------~~~~-----~~~~~~~~~  159 (310)
                      .+|+++|..++|||||+++|++........ ...  +     .....+....          ....     ......+.+
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   88 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRI   88 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEE
T ss_pred             eEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEEE
Confidence            379999999999999999999743221100 000  0     0000000000          0000     000011368


Q ss_pred             EEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh
Q 021615          160 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD  239 (310)
Q Consensus       160 ~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~  239 (310)
                      .++||||+.++       .....+.+..||++++|+|+.++....+.+..+..+..+    .-.|++|++||+|+.+..+
T Consensus        89 ~iiD~PGH~df-------~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~----~i~~iIV~vNK~Dl~~~~~  157 (205)
T d2qn6a3          89 SFIDAPGHEVL-------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII----GVKNLIIVQNKVDVVSKEE  157 (205)
T ss_dssp             EEEECSCHHHH-------HHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT----TCCCEEEEEECGGGSCHHH
T ss_pred             EEeccchHHHH-------HhhhhcceeccccccccccccccccchhHHHHHHHHHHc----CCceeeeccccCCCccchH
Confidence            99999999654       445667788899999999999864333333333444443    1358899999999987643


Q ss_pred             HH---HHHHHHHHhc-----CCCccccCccCCHHHHHHHHhhc
Q 021615          240 RL---QSLTEEILKI-----GCDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       240 ~~---~~l~~~l~~~-----g~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                      ..   ..+.+.+...     .+.++||++|.|+.++++.+...
T Consensus       158 ~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         158 ALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            22   2233333322     23458999999999999886543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.66  E-value=2.7e-16  Score=129.27  Aligned_cols=155  Identities=21%  Similarity=0.220  Sum_probs=98.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ...||++||.+|||||||+++|++..... .+  +|...+...+....        ..+.++|++|......       .
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~-~~--~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-------~   73 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HV--PTLHPTSEELTIAG--------MTFTTFDLGGHIQARR-------V   73 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETT--------EEEEEEEECC----CC-------G
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcc-ee--cccccceeEEEecc--------cccccccccchhhhhh-------H
Confidence            34689999999999999999999876432 11  22223333333321        1678999999876532       2


Q ss_pred             HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh----------
Q 021615          181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK----------  250 (310)
Q Consensus       181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~----------  250 (310)
                      +......++.+++++|.++................ .....+.|+++++||.|+..... ...+.+.+..          
T Consensus        74 ~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~K~D~~~~~~-~~~i~~~~~~~~~~~~~~~~  151 (186)
T d1f6ba_          74 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMT-DETIANVPILILGNKIDRPEAIS-EERLREMFGLYGQTTGKGSV  151 (186)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHT-CGGGTTSCEEEEEECTTSTTCCC-HHHHHHHHTCTTTCCCSSCC
T ss_pred             HhhhhcccceeeeeeeccCccchHHHHHHHHHhhc-ccccCCCceEEEEeccCccccCC-HHHHHHHHhhcccchhhhhh
Confidence            23556789999999999987666555443333332 22335799999999999976432 2334433321          


Q ss_pred             ---------cCCCccccCccCCHHHHHHHHhhcc
Q 021615          251 ---------IGCDKVTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       251 ---------~g~~~~sa~~~~gi~~l~~~l~~~~  275 (310)
                               ..+.++||++|+|++++|++|++.+
T Consensus       152 ~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         152 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             hHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence                     1244589999999999999998654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.63  E-value=7.5e-16  Score=124.61  Aligned_cols=153  Identities=16%  Similarity=0.143  Sum_probs=100.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||++||.+|||||||+|+|++.+... .+  .|.......+....        ..+.++|++|......       ...
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~~~~-~~--~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-------~~~   67 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGEVVT-TI--PTIGFNVETVTYKN--------LKFQVWDLGGLTSIRP-------YWR   67 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCC-CC--CCSSEEEEEEEETT--------EEEEEEEECCCGGGGG-------GGG
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcc-ee--cccceeeeeeccCc--------eEEEEeeccccccccc-------cch
Confidence            579999999999999999999886432 11  12222222222221        2789999999865422       222


Q ss_pred             HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------hcCCCc
Q 021615          183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDK  255 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~~g~~~  255 (310)
                      .....++.+++++|..+.........+....... ......|+++|+||+|+..... ..++...+.       ...+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iv~nk~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~  145 (169)
T d1upta_          68 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQAMT-SSEMANSLGLPALKDRKWQIFK  145 (169)
T ss_dssp             GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCTTSCEEEEE
T ss_pred             hhhhhhhhhhhhhhhhhcchhhhccchhhhhhhh-hccccceEEEEEeecccccccc-HHHHHHHHHHHHHhcCCCEEEE
Confidence            4456789999999998866666554433333221 1224688999999999986533 223333222       123566


Q ss_pred             cccCccCCHHHHHHHHhhcc
Q 021615          256 VTSETELSSEDAVKSLSTEG  275 (310)
Q Consensus       256 ~sa~~~~gi~~l~~~l~~~~  275 (310)
                      +||+++.|++++|+.|+..+
T Consensus       146 ~SA~~g~gv~e~~~~l~~~l  165 (169)
T d1upta_         146 TSATKGTGLDEAMEWLVETL  165 (169)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999987654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.61  E-value=9.2e-16  Score=134.48  Aligned_cols=128  Identities=17%  Similarity=0.129  Sum_probs=87.0

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  179 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~  179 (310)
                      ...+|+|+|.||||||||+|+|+|.+..+ ++.+.+|............        ..+.++||||+.+.......+..
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--------~~i~viDTPGl~~~~~~~~~~~~  102 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--------FTLNIIDTPGLIEGGYINDMALN  102 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--------EEEEEEECCCSEETTEECHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--------EEEEEEeeecccCCcchHHHHHH
Confidence            44689999999999999999999988655 6778888877666655432        27999999999876444343333


Q ss_pred             HHHHHh--hhcCEEEEecccCCC-CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          180 NFLRHL--RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       180 ~~~~~l--~~~d~il~VvD~s~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      ......  ...++++||++.+.. .+..+...+......+... ..+++++|+||+|....
T Consensus       103 ~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~-~~~~~ivv~t~~D~~~~  162 (257)
T d1h65a_         103 IIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG-IWNKAIVALTHAQFSPP  162 (257)
T ss_dssp             HHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECCSCCCG
T ss_pred             HHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh-hhhCEEEEEECcccCCc
Confidence            332222  346889999888764 3344433333222233222 24689999999999763

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=5.5e-15  Score=121.62  Aligned_cols=158  Identities=20%  Similarity=0.104  Sum_probs=81.9

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCC-CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH-HH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL-GR  179 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~-~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l-~~  179 (310)
                      .++|+++|+||||||||+|+|++.+..... ...+|............        ......++++........... ..
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~   87 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG--------KRLVDLPGYGYAEVPEEMKRKWQR   87 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT--------EEEEECCCCC------CCHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccc--------cceeeeecccccchhhhhhhhhhh
Confidence            467999999999999999999998765522 22222222111111110        022333333332221111111 11


Q ss_pred             H---HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---HHHHHHHHHhcC-
Q 021615          180 N---FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEILKIG-  252 (310)
Q Consensus       180 ~---~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~l~~~l~~~g-  252 (310)
                      .   .......++.++++.|........... +...+..     ...++++++||+|+.+..+.   .+.+.+.+...+ 
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~  161 (188)
T d1puia_          88 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ-MIEWAVD-----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG  161 (188)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred             hhhhhhhhhhheeEEEEeecccccchhHHHH-HHHHhhh-----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCC
Confidence            1   112223344555666666555444433 3344444     36789999999999876432   334444444332 


Q ss_pred             ---CCccccCccCCHHHHHHHHhh
Q 021615          253 ---CDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       253 ---~~~~sa~~~~gi~~l~~~l~~  273 (310)
                         +..+||++|.|++++++.|..
T Consensus       162 ~~~~i~vSA~~g~Gid~L~~~i~~  185 (188)
T d1puia_         162 DVQVETFSSLKKQGVDKLRQKLDT  185 (188)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCcEEEEeCCCCCCHHHHHHHHHH
Confidence               344899999999999988753

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.55  E-value=5.2e-14  Score=120.45  Aligned_cols=155  Identities=19%  Similarity=0.109  Sum_probs=93.3

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCC-----------CCCCCceeeccceEe---------eCCCCCC-----Cc
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI-----------ADYPFTTLMPNLGRL---------DGDPTLG-----AE  153 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i-----------~~~~~tT~~~~~~~v---------~~~~~~~-----~~  153 (310)
                      .+...+|+++|..++|||||+++|+.....+           +...++|.+.....+         .......     ..
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            3456679999999999999999997432111           111122211100000         0000000     00


Q ss_pred             cCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCC
Q 021615          154 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKI  232 (310)
Q Consensus       154 ~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~  232 (310)
                      ..++.+.++||||+.++       .....+.+..+|++++|+|+..+...+..+.+. .+..     .+++ +|+++||+
T Consensus        86 ~~~~~~~iiD~PGH~df-------v~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~-~~~~-----~gv~~iiv~vNK~  152 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQY-------TRNMATGASTCDLAIILVDARYGVQTQTRRHSY-IASL-----LGIKHIVVAINKM  152 (222)
T ss_dssp             CSSEEEEEEECCCSGGG-------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHH-HHHH-----TTCCEEEEEEECT
T ss_pred             ccceEEEEEeccchhhh-------hhhhccccccCceEEEEeccccCcccchHHHHH-HHHH-----cCCCEEEEEEEcc
Confidence            01247999999999765       345667788999999999999887777665543 4443     3544 78999999


Q ss_pred             CCCCcH-hHH----HHHHHHHHhcCC-------CccccCccCCHHH
Q 021615          233 DLPEAR-DRL----QSLTEEILKIGC-------DKVTSETELSSED  266 (310)
Q Consensus       233 Dl~~~~-~~~----~~l~~~l~~~g~-------~~~sa~~~~gi~~  266 (310)
                      |+.+.. +..    +++...+...++       .++||.+|+|+.+
T Consensus       153 D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         153 DLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             ccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            998632 222    344444555544       3479999988743

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=1.7e-14  Score=126.96  Aligned_cols=119  Identities=19%  Similarity=0.176  Sum_probs=84.3

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCC------------CC------CCCceeeccceEeeCCCCCCCccCCCceE
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI------------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEAT  160 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i------------~~------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~  160 (310)
                      .+.+.+|+++|..++|||||+.+|+-....+            .+      .-+.|+......+.+..        .+++
T Consensus         3 ~~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--------~~~n   74 (276)
T d2bv3a2           3 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--------HRIN   74 (276)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--------EEEE
T ss_pred             hhhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--------eEEE
Confidence            3556789999999999999999996321111            00      11223333333343332        3899


Q ss_pred             EEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615          161 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR  238 (310)
Q Consensus       161 i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~  238 (310)
                      ++||||+.++..       .....+..+|.+|+|+|+.++...+....| +....     .+.|.++++||+|+..++
T Consensus        75 ~iDtPG~~dF~~-------e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~-----~~lP~i~fINKmDr~~ad  139 (276)
T d2bv3a2          75 IIDAPGHVDFTI-------EVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK-----YKVPRIAFANKMDKTGAD  139 (276)
T ss_dssp             EECCCSSSSCST-------THHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT-----TTCCEEEEEECTTSTTCC
T ss_pred             EecCCchhhhHH-------HHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH-----cCCCEEEEEecccccccc
Confidence            999999999854       345667789999999999998877775544 56665     379999999999998763

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.6e-14  Score=134.21  Aligned_cols=156  Identities=15%  Similarity=0.204  Sum_probs=95.7

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-----CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  175 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-----~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~  175 (310)
                      ...+|+|+|.||||||||+|+|+|.....     .....||..+........         ..+.+|||||+........
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~---------~~~~l~DtPG~~~~~~~~~  125 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNI---------PNVVFWDLPGIGSTNFPPD  125 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSC---------TTEEEEECCCGGGSSCCHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCC---------CeEEEEeCCCcccccccHH
Confidence            35689999999999999999999865321     334456766554333211         2689999999976543222


Q ss_pred             hHHHHHHH--HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC------------cHhHH
Q 021615          176 GLGRNFLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE------------ARDRL  241 (310)
Q Consensus       176 ~l~~~~~~--~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~------------~~~~~  241 (310)
                          .++.  .+..+|+++++.|..  ....+. .+.+++..     .++|+++|+||+|...            .+...
T Consensus       126 ----~~~~~~~~~~~d~~l~~~~~~--~~~~d~-~l~~~l~~-----~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l  193 (400)
T d1tq4a_         126 ----TYLEKMKFYEYDFFIIISATR--FKKNDI-DIAKAISM-----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVL  193 (400)
T ss_dssp             ----HHHHHTTGGGCSEEEEEESSC--CCHHHH-HHHHHHHH-----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHH
T ss_pred             ----HHHHHhhhhcceEEEEecCCC--CCHHHH-HHHHHHHH-----cCCCEEEEEeCcccccchhhhcccccccHHHHH
Confidence                2222  356789888887743  444444 45567766     3799999999999631            11122


Q ss_pred             HHH----HHHHHhcCCCc-----cccC--ccCCHHHHHHHHhhccCC
Q 021615          242 QSL----TEEILKIGCDK-----VTSE--TELSSEDAVKSLSTEGGE  277 (310)
Q Consensus       242 ~~l----~~~l~~~g~~~-----~sa~--~~~gi~~l~~~l~~~~~~  277 (310)
                      +.+    ...+...+...     +|..  ...++..+.+.+...+.+
T Consensus       194 ~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         194 QDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             HHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence            233    34445544433     3433  345888888887666544

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=5.9e-15  Score=122.38  Aligned_cols=147  Identities=11%  Similarity=0.114  Sum_probs=93.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||++||..|||||||+++|...+.       .|.......+....        ..+.+|||+|+.....       .+.
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~~~-------~t~~~~~~~~~~~~--------~~~~i~D~~Gq~~~~~-------~~~   60 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKIIHE-------AGTGIVETHFTFKD--------LHFKMFDVGGQRSERK-------KWI   60 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHS-------CCCSEEEEEEEETT--------EEEEEEEECCSGGGGG-------GGG
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-------CCccEEEEEEEeee--------eeeeeecccccccccc-------chh
Confidence            5799999999999999999986541       12211222233222        2799999999977633       233


Q ss_pred             HHhhhcCEEEEecccCCCCcH-----------HHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc--------------
Q 021615          183 RHLRRTRLLVHVIDAAAENPV-----------NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--------------  237 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~~~-----------~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--------------  237 (310)
                      .+++.++++++|+|.++...+           +....|...+...  .....|+++++||+|+...              
T Consensus        61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~--~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~  138 (195)
T d1svsa1          61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK--WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEY  138 (195)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCG--GGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTC
T ss_pred             hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhccc--ccCCCCEEEEeccchhhhhhccchHHHHHhhhh
Confidence            556799999999998764332           2223333333322  2246899999999986321              


Q ss_pred             ------HhHHHHHHHHHHhc-------C--CCccccCccCCHHHHHHHHhh
Q 021615          238 ------RDRLQSLTEEILKI-------G--CDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       238 ------~~~~~~l~~~l~~~-------g--~~~~sa~~~~gi~~l~~~l~~  273 (310)
                            .+....+...+...       .  +.++||+++.+++++|..+..
T Consensus       139 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~  189 (195)
T d1svsa1         139 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD  189 (195)
T ss_dssp             CSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHH
Confidence                  11112233333322       1  224899999999999988754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=4.7e-15  Score=123.52  Aligned_cols=151  Identities=11%  Similarity=0.108  Sum_probs=98.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  182 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~  182 (310)
                      .||+++|.+|||||||++++......    ..+|.......+....        ..+.+||++|+.....       .+.
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~~~----~~pTiG~~~~~~~~~~--------~~~~~~d~~g~~~~~~-------~~~   63 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIHGS----GVPTTGIIEYPFDLQS--------VIFRMVDVGGQRSERR-------KWI   63 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTSS----CCCCCSCEEEEEECSS--------CEEEEEECCCSTTGGG-------GGG
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCC----CCceeeEEEEEEeccc--------eeeeeccccccccccc-------ccc
Confidence            57999999999999999999876532    1234433333444332        2789999999976533       233


Q ss_pred             HHhhhcCEEEEecccCCCC-----------cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-------------
Q 021615          183 RHLRRTRLLVHVIDAAAEN-----------PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-------------  238 (310)
Q Consensus       183 ~~l~~~d~il~VvD~s~~~-----------~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-------------  238 (310)
                      ..++.++++++|+|.++..           ..+....|...+....  ..+.|+++++||+|+....             
T Consensus        64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~--~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~  141 (200)
T d2bcjq2          64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW--FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEY  141 (200)
T ss_dssp             GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG--GSSSEEEEEEECHHHHHHHTTTSCHHHHSTTC
T ss_pred             ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhh--ccCccEEEecchhhhhhhcccchHHHHhcccc
Confidence            4567899999999987632           2334455655555432  2578999999999974311             


Q ss_pred             --------hHHHHHHHHHHhcC--------CCccccCccCCHHHHHHHHhhc
Q 021615          239 --------DRLQSLTEEILKIG--------CDKVTSETELSSEDAVKSLSTE  274 (310)
Q Consensus       239 --------~~~~~l~~~l~~~g--------~~~~sa~~~~gi~~l~~~l~~~  274 (310)
                              .....+...+....        +.++||+++.++.++|..+...
T Consensus       142 ~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~  193 (200)
T d2bcjq2         142 DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT  193 (200)
T ss_dssp             CSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHH
Confidence                    01112222332221        2357999999999999887543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.2e-14  Score=121.30  Aligned_cols=151  Identities=16%  Similarity=0.159  Sum_probs=90.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  181 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~  181 (310)
                      +.||+++|.+|||||||++++.-.+   .  ..+|.......+....        .++.+||++|+....       ..+
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f~~---~--~~pTiG~~~~~~~~~~--------~~~~~~D~~gq~~~~-------~~~   61 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRIIH---G--QDPTKGIHEYDFEIKN--------VPFKMVDVGGQRSER-------KRW   61 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH---S--CCCCSSEEEEEEEETT--------EEEEEEEECC--------------C
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC---C--CCCeeeeEEEEEeeee--------eeeeeecccceeeec-------ccc
Confidence            5689999999999999999994221   1  1123333333444332        278999999986542       223


Q ss_pred             HHHhhhcCEEEEecccCCCCc----------HHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc--------------
Q 021615          182 LRHLRRTRLLVHVIDAAAENP----------VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--------------  237 (310)
Q Consensus       182 ~~~l~~~d~il~VvD~s~~~~----------~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--------------  237 (310)
                      ..+.+.++++++++|.++...          .+....++..+-. .....+.|+++++||+|+...              
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~  140 (200)
T d1zcba2          62 FECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN-NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEF  140 (200)
T ss_dssp             TTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT-CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTC
T ss_pred             cccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhh-ChhhcCceEEEEeccchhhhhhccccHHHHhCccc
Confidence            345678899999999987432          2222333333322 112357899999999997531              


Q ss_pred             -------HhHHHHHHHHHHhcC---------CCccccCccCCHHHHHHHHhh
Q 021615          238 -------RDRLQSLTEEILKIG---------CDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       238 -------~~~~~~l~~~l~~~g---------~~~~sa~~~~gi~~l~~~l~~  273 (310)
                             ....+.+.+.+....         ...+||+++.+++.+|+.+..
T Consensus       141 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d  192 (200)
T d1zcba2         141 EGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD  192 (200)
T ss_dssp             CSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHH
Confidence                   111223333333221         124799999999999987643

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.48  E-value=1.3e-13  Score=120.88  Aligned_cols=126  Identities=23%  Similarity=0.215  Sum_probs=84.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC------CC------------CCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI------AD------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  163 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i------~~------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D  163 (310)
                      +.+|+++|..++|||||+.+|+.....+      .+            .-..|.......+.+.        +.+++++|
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~--------~~~~n~iD   73 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--------GHRVFLLD   73 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--------TEEEEEEE
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccccc--------ccceeEEc
Confidence            4579999999999999999995322111      00            0112333223333322        23799999


Q ss_pred             CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-hHHH
Q 021615          164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQ  242 (310)
Q Consensus       164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~  242 (310)
                      |||+.++.       ......++.+|++|+|+|+.++...+....| +.+..     .++|.++++||+|..... +...
T Consensus        74 tPGh~dF~-------~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~-----~~~p~~i~iNk~D~~~~~~~~l~  140 (267)
T d2dy1a2          74 APGYGDFV-------GEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAER-----LGLPRMVVVTKLDKGGDYYALLE  140 (267)
T ss_dssp             CCCSGGGH-------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCEEEEEECGGGCCCHHHHHH
T ss_pred             cCchhhhh-------hhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhh-----cccccccccccccccccchhhhh
Confidence            99998773       3455678899999999999998877776555 45555     379999999999985332 2334


Q ss_pred             HHHHHH
Q 021615          243 SLTEEI  248 (310)
Q Consensus       243 ~l~~~l  248 (310)
                      .+++.+
T Consensus       141 ~~~~~l  146 (267)
T d2dy1a2         141 DLRSTL  146 (267)
T ss_dssp             HHHHHH
T ss_pred             hHHHHh
Confidence            444444

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=1.1e-13  Score=119.80  Aligned_cols=143  Identities=17%  Similarity=0.148  Sum_probs=90.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-----------------CC--------------CCCceeeccceEeeCCCCCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-----------------AD--------------YPFTTLMPNLGRLDGDPTLG  151 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-----------------~~--------------~~~tT~~~~~~~v~~~~~~~  151 (310)
                      .+|+++|..++|||||+.+|+-.-..+                 ..              ..+.|+......+...    
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~----   82 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP----   82 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS----
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC----
Confidence            479999999999999999995211000                 01              1233444444444433    


Q ss_pred             CccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-------cHHHHHHHHHHHHhcCCCCCCCC
Q 021615          152 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYLERP  224 (310)
Q Consensus       152 ~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-------~~~~~~~~~~~l~~~~~~~~~~p  224 (310)
                          +.++.++||||+.++       .....+.+..+|++|+|+|+....       ..+..+.+ ..+..     .+.|
T Consensus        83 ----~~~i~iiDtPGH~df-------~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~-~~~~~-----~gv~  145 (239)
T d1f60a3          83 ----KYQVTVIDAPGHRDF-------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT-----LGVR  145 (239)
T ss_dssp             ----SEEEEEEECCCCTTH-------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH-----TTCC
T ss_pred             ----CEEEEEEECCCcHHH-------HHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHH-HHHHH-----cCCC
Confidence                238999999999765       446667788999999999998631       12222322 23333     3555


Q ss_pred             -EEEEEeCCCCCCcH-hHH----HHHHHHHHhcCC-------CccccCccCCHHH
Q 021615          225 -FIVVLNKIDLPEAR-DRL----QSLTEEILKIGC-------DKVTSETELSSED  266 (310)
Q Consensus       225 -~ivv~NK~Dl~~~~-~~~----~~l~~~l~~~g~-------~~~sa~~~~gi~~  266 (310)
                       +||++||+|+.+.. +..    +++...+...++       ..+|+..+.|+.+
T Consensus       146 ~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         146 QLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             EEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence             78899999998642 222    344444444443       4578888887655

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=4.5e-13  Score=116.24  Aligned_cols=149  Identities=21%  Similarity=0.213  Sum_probs=79.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCCC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPT  149 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~~  149 (310)
                      ...+|+++|..++|||||+.+|+..-..+                               ....+.|.........+.  
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~--  100 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE--  100 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS--
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc--
Confidence            34479999999999999999994211000                               001111221111112111  


Q ss_pred             CCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHH------HHHHHHHHHHhcCCCCCCC
Q 021615          150 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVN------DYRTVKEELRMYNPDYLER  223 (310)
Q Consensus       150 ~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~------~~~~~~~~l~~~~~~~~~~  223 (310)
                            ...+.++||||+.++..       ...+.+..+|++++|+|+..+....      +.......+..+     ++
T Consensus       101 ------~~~i~~iDtPGH~df~~-------~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~-----~i  162 (245)
T d1r5ba3         101 ------HRRFSLLDAPGHKGYVT-------NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ-----GI  162 (245)
T ss_dssp             ------SEEEEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT-----TC
T ss_pred             ------cceeeeecccccccchh-------hhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc-----CC
Confidence                  23799999999977632       4456677899999999998742110      112222333332     44


Q ss_pred             -CEEEEEeCCCCCCc---HhHHHHHHHHH----Hhc---------CCCccccCccCCHHHHHH
Q 021615          224 -PFIVVLNKIDLPEA---RDRLQSLTEEI----LKI---------GCDKVTSETELSSEDAVK  269 (310)
Q Consensus       224 -p~ivv~NK~Dl~~~---~~~~~~l~~~l----~~~---------g~~~~sa~~~~gi~~l~~  269 (310)
                       ++++++||+|+...   +++.+++.+.+    ..+         .+.++||.+|.|+.+++.
T Consensus       163 ~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         163 NHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             SSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             CeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence             47899999999742   23334433333    222         246689999999866543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.36  E-value=3.9e-13  Score=115.21  Aligned_cols=110  Identities=22%  Similarity=0.221  Sum_probs=65.0

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHH--HHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVK--EELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~--~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .+.++|+||+.+...... ....+.+ ....+.+++|+|+......+......  ......   ....|.++|+||+|+.
T Consensus        96 ~~~~id~~g~~~~~~~~~-~~~~~~~-~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~---~~~~~~ivvinK~D~~  170 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHE-FGVRLME-NLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLL  170 (244)
T ss_dssp             SEEEEECCSSHHHHHHSH-HHHHHHH-TSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGC
T ss_pred             ceeeeccccchhHHHHHH-HHHHHHh-hccCceEEEEeccccccCchhHhhHHHHHHHHHH---HhCCCceeeeeccccc
Confidence            589999999976532211 1222222 22467899999987654443332211  111110   0367999999999999


Q ss_pred             CcHhHHHHHH----------H------------------HHH----hcCCCccccCccCCHHHHHHHHhh
Q 021615          236 EARDRLQSLT----------E------------------EIL----KIGCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       236 ~~~~~~~~l~----------~------------------~l~----~~g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      ..++. +.+.          .                  .+.    ...+.++||++++|+++++..+.+
T Consensus       171 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e  239 (244)
T d1yrba1         171 SEEEK-ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYE  239 (244)
T ss_dssp             CHHHH-HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHH
T ss_pred             cHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            75321 1111          0                  011    134666899999999999988643

>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Obg-fold
superfamily: Obg GTP-binding protein N-terminal domain
family: Obg GTP-binding protein N-terminal domain
domain: Obg GTP-binding protein N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.35  E-value=2e-13  Score=109.60  Aligned_cols=71  Identities=35%  Similarity=0.535  Sum_probs=61.0

Q ss_pred             cceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeeh
Q 021615           18 MHIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSL   95 (310)
Q Consensus        18 ~~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~   95 (310)
                      +.|.| +||+|+| +++++++||+++++++++|+||.||+||++|.++.             +++|+.++.|++||++.+
T Consensus        84 ~~I~VP~GT~V~~~~~~~~i~dl~~~g~~~lva~GG~GG~GN~~f~ss~-------------n~~P~~~~~G~~Gee~~i  150 (156)
T d1udxa1          84 LVIEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSPT-------------RQAPRFAEAGEEGEKRRL  150 (156)
T ss_dssp             EEEEECSSEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGGCCSS-------------CSSCCEEECCCCCCEEEE
T ss_pred             EEEEecCCCEEEeCCCCEEEEEeccCCcEEEEecCCCCCCccccccccc-------------CCCCccccCCCCceEEEE
Confidence            34555 8999998 57999999999999999999999999998876532             237789999999999999


Q ss_pred             hhhhhc
Q 021615           96 ELILRV  101 (310)
Q Consensus        96 ~~~l~~  101 (310)
                      .++||.
T Consensus       151 ~LELKL  156 (156)
T d1udxa1         151 RLELML  156 (156)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            998873

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=1.1e-12  Score=118.80  Aligned_cols=121  Identities=21%  Similarity=0.179  Sum_probs=79.9

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCC----------------CCCCCceeeccceEeeCCC----------CCCCcc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDP----------TLGAEK  154 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i----------------~~~~~tT~~~~~~~v~~~~----------~~~~~~  154 (310)
                      .+++|+++|..++|||||+.+|+.....+                ....+.|+......+....          ......
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            45679999999999999999996221111                0011223322222221100          000111


Q ss_pred             CCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615          155 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  234 (310)
Q Consensus       155 ~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl  234 (310)
                        ..+.++||||+.++..       .....++.||++++|||+.++...+....|.....      .+.|+++|+||+|+
T Consensus        96 --~~inliDtPGh~dF~~-------ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~------~~~p~i~viNKiDr  160 (341)
T d1n0ua2          96 --FLINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG------ERIKPVVVINKVDR  160 (341)
T ss_dssp             --EEEEEECCCCCCSSCH-------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH------TTCEEEEEEECHHH
T ss_pred             --eEEEEEcCCCcHHHHH-------HHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH------cCCCeEEEEECccc
Confidence              2589999999998843       45566788999999999999888887666655444      37899999999997


Q ss_pred             CC
Q 021615          235 PE  236 (310)
Q Consensus       235 ~~  236 (310)
                      ..
T Consensus       161 ~~  162 (341)
T d1n0ua2         161 AL  162 (341)
T ss_dssp             HH
T ss_pred             cc
Confidence            53

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.30  E-value=4.2e-12  Score=108.49  Aligned_cols=144  Identities=19%  Similarity=0.173  Sum_probs=82.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCCCCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTLG  151 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~~~~  151 (310)
                      .+|+++|.-++|||||+.+|+.....+                               ....+.|.......++..    
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~----   79 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK----   79 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS----
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecC----
Confidence            379999999999999999985311000                               111222333222233322    


Q ss_pred             CccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHH------HHHHHHHHHHhcCCCCCCCCE
Q 021615          152 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVN------DYRTVKEELRMYNPDYLERPF  225 (310)
Q Consensus       152 ~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~------~~~~~~~~l~~~~~~~~~~p~  225 (310)
                          ...+.++||||+.++       .....+.+..||++|+|||+.++...+      +...-+..+...    .-.++
T Consensus        80 ----~~~i~iiDtPGH~df-------~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~----~~~~i  144 (224)
T d1jnya3          80 ----KYFFTIIDAPGHRDF-------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM----GLDQL  144 (224)
T ss_dssp             ----SCEEEECCCSSSTTH-------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT----TCTTC
T ss_pred             ----CceeEEeeCCCcHHH-------HHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh----CCCce
Confidence                137999999999765       335567788899999999999753211      111111122221    23468


Q ss_pred             EEEEeCCCCCCc---HhHHH----HHHHHHHhcCC-------CccccCccCCHH
Q 021615          226 IVVLNKIDLPEA---RDRLQ----SLTEEILKIGC-------DKVTSETELSSE  265 (310)
Q Consensus       226 ivv~NK~Dl~~~---~~~~~----~l~~~l~~~g~-------~~~sa~~~~gi~  265 (310)
                      |+++||+|+...   ....+    .+...+..+++       .++|+..|.|+.
T Consensus       145 Iv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         145 IVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             EEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             EEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            889999998742   22233    33333333332       347888888764

>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Obg-fold
superfamily: Obg GTP-binding protein N-terminal domain
family: Obg GTP-binding protein N-terminal domain
domain: Obg GTP-binding protein N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.29  E-value=7e-13  Score=106.53  Aligned_cols=71  Identities=32%  Similarity=0.507  Sum_probs=61.0

Q ss_pred             cceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeeh
Q 021615           18 MHIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSL   95 (310)
Q Consensus        18 ~~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~   95 (310)
                      +.|.| +||+|++ +++++++||.++++++++|+||.||+||++|.++.             ++.|+.++.|++||++.+
T Consensus        85 lii~VP~GT~V~~~~~~~~i~dl~~~g~~~lvakGG~GG~GN~~f~ss~-------------n~~P~~~~~G~~Ge~~~i  151 (157)
T d1lnza1          85 MVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPA-------------NPAPQLSENGEPGKERYI  151 (157)
T ss_dssp             EEEEECTTEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGSCBTT-------------BSSCCCCCCCCCCCEEEE
T ss_pred             EEEEeccceEEecCCCcEEEEeeccCCceEEEEecCCCCCccccccccc-------------CCCCccccCCCCceEEEE
Confidence            44555 8999998 56899999999999999999999999999887543             246788999999999999


Q ss_pred             hhhhhc
Q 021615           96 ELILRV  101 (310)
Q Consensus        96 ~~~l~~  101 (310)
                      .|+||.
T Consensus       152 ~LeLKL  157 (157)
T d1lnza1         152 VLELKV  157 (157)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999873

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.29  E-value=1.3e-12  Score=111.37  Aligned_cols=116  Identities=18%  Similarity=0.200  Sum_probs=76.4

Q ss_pred             hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615           99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  178 (310)
Q Consensus        99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~  178 (310)
                      .+...||+++|.+|||||||++++...+.      .+|.......+..+.        ..+.+||+.|+.....      
T Consensus         3 ~k~~~KilllG~~~vGKTsll~~~~~~~~------~pTiG~~~~~~~~~~--------~~~~~~D~~Gq~~~r~------   62 (221)
T d1azta2           3 YRATHRLLLLGAGESGKSTIVKQMRILHV------VLTSGIFETKFQVDK--------VNFHMFDVGGQRDERR------   62 (221)
T ss_dssp             HHHSEEEEEECSTTSSHHHHHHHHHHHHC------CCCCSCEEEEEEETT--------EEEEEEECCCSTTTTT------
T ss_pred             chhcCEEEEECCCCCCHHHHHHHHhcCCc------CCCCCeEEEEEEECc--------EEEEEEecCccceecc------
Confidence            45678999999999999999999975432      123333333333332        2789999999875532      


Q ss_pred             HHHHHHhhhcCEEEEecccCCCC----------cH-HHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAEN----------PV-NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~----------~~-~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                       .+..+.+.++++++|+|.++.+          .. +....|...+.  .+...+.|+++++||+|+...
T Consensus        63 -~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~--~~~~~~~~iil~~NK~Dl~~~  129 (221)
T d1azta2          63 -KWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN--NRWLRTISVILFLNKQDLLAE  129 (221)
T ss_dssp             -GGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT--CGGGSSCEEEEEEECHHHHHH
T ss_pred             -chhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhc--ChhhCCCcEEEEechhhhhhh
Confidence             3345567899999999987521          12 22222322232  223357899999999998653

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=2.2e-11  Score=107.95  Aligned_cols=133  Identities=20%  Similarity=0.242  Sum_probs=77.7

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCC-------CCCCcc-------------------
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDP-------TLGAEK-------------------  154 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~-------~~~~~~-------------------  154 (310)
                      ..|+|+|+|..++|||||+|+|+|..........||..|..-.+....       ..+...                   
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            467899999999999999999999875332222344333222211000       000000                   


Q ss_pred             ------------------CCCceEEEeCCCCCccccCCc------hHHHHHHHHhhhcCE-EEEecccCCCCcHHHHHHH
Q 021615          155 ------------------YSSEATLADLPGLIEGAHLGK------GLGRNFLRHLRRTRL-LVHVIDAAAENPVNDYRTV  209 (310)
Q Consensus       155 ------------------~~~~~~i~DtPG~~~~~~~~~------~l~~~~~~~l~~~d~-il~VvD~s~~~~~~~~~~~  209 (310)
                                        ....+.++||||+......+.      .+......++..++. +++|.++...........+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                              013589999999986543221      122334556666765 5566666554444443444


Q ss_pred             HHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615          210 KEELRMYNPDYLERPFIVVLNKIDLPEAR  238 (310)
Q Consensus       210 ~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~  238 (310)
                      .+.+   ++  ...++++|+||+|.....
T Consensus       185 ~~~~---~~--~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         185 AKEV---DP--QGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHH---CT--TCSSEEEEEECGGGSCTT
T ss_pred             HHHh---Cc--CCCceeeEEeccccccch
Confidence            4443   33  357899999999998653

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.24  E-value=2.9e-11  Score=107.65  Aligned_cols=132  Identities=20%  Similarity=0.237  Sum_probs=71.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCC---------------Cc-------------
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---------------AE-------------  153 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~---------------~~-------------  153 (310)
                      +|+|+|||..++|||||+|+|+|..........||..|..-.+...+...               ..             
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            57899999999999999999999875432222334333222211000000               00             


Q ss_pred             -----------c-------------CCCceEEEeCCCCCccccCC------chHHHHHHHHhhhcCEEEEe-cccCCCCc
Q 021615          154 -----------K-------------YSSEATLADLPGLIEGAHLG------KGLGRNFLRHLRRTRLLVHV-IDAAAENP  202 (310)
Q Consensus       154 -----------~-------------~~~~~~i~DtPG~~~~~~~~------~~l~~~~~~~l~~~d~il~V-vD~s~~~~  202 (310)
                                 .             ....+.++||||+......+      ......+..++..++.++++ +++.....
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~  183 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc
Confidence                       0             01367899999998643321      11223455677888875555 45544332


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615          203 VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR  238 (310)
Q Consensus       203 ~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~  238 (310)
                      .+....+.+   .+++  ...++++|+||+|.....
T Consensus       184 ~~~~~~~~~---~~~~--~~~r~i~Vitk~D~~~~~  214 (306)
T d1jwyb_         184 NSDALQLAK---EVDP--EGKRTIGVITKLDLMDKG  214 (306)
T ss_dssp             TCSHHHHHH---HHCS--SCSSEEEEEECTTSSCSS
T ss_pred             ccHHHHHHH---HhCc--CCCeEEEEEeccccccch
Confidence            333333333   3333  346899999999997653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=1.9e-10  Score=103.38  Aligned_cols=96  Identities=8%  Similarity=0.058  Sum_probs=55.4

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .+.++.|.|....          =......+|.+++|+++...+..+..+.-.-+          .+-++|+||+|+...
T Consensus       148 d~iliEtvG~gq~----------e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e----------~aDi~VvNKaD~~~~  207 (327)
T d2p67a1         148 DVVIVETVGVGQS----------ETEVARMVDCFISLQIAGGGDDLQGIKKGLME----------VADLIVINKDDGDNH  207 (327)
T ss_dssp             SEEEEEEECCTTH----------HHHHHTTCSEEEEEECC------CCCCHHHHH----------HCSEEEECCCCTTCH
T ss_pred             CeEEEeecccccc----------chhhhhccceEEEEecCCCchhhhhhchhhhc----------cccEEEEEeecccch
Confidence            4567777775332          12334578999999988766554433322222          233889999999875


Q ss_pred             HhH---HHHHHHHHHhc-----C----CCccccCccCCHHHHHHHHhh
Q 021615          238 RDR---LQSLTEEILKI-----G----CDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       238 ~~~---~~~l~~~l~~~-----g----~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      ...   ...+...+..+     .    +..+||.++.|++++.+.+..
T Consensus       208 ~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~  255 (327)
T d2p67a1         208 TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIID  255 (327)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHH
Confidence            432   22333333322     1    222899999999999988754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.97  E-value=4.1e-10  Score=98.70  Aligned_cols=60  Identities=27%  Similarity=0.386  Sum_probs=39.1

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  171 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~  171 (310)
                      ...+|++||.||||||||+|+|.+.+.. +++.|++|.+......           +..+.++||||+....
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~-----------~~~~~l~DTPGi~~p~  171 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-----------GKELELLDTPGILWPK  171 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-----------TTTEEEEECCCCCCSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEEC-----------CCCeEEecCCCccccC
Confidence            3467999999999999999999998865 4999999987654332           2379999999997543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.94  E-value=9.4e-10  Score=98.56  Aligned_cols=96  Identities=10%  Similarity=0.127  Sum_probs=58.0

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .+.++-|.|.....        .  ....-+|..++|+....++..+..          +....+.+=++|+||+|+.+.
T Consensus       145 d~iiiETVG~gq~e--------~--~~~~~~D~~v~v~~p~~GD~iQ~~----------k~gilE~aDi~vvNKaD~~~~  204 (323)
T d2qm8a1         145 DVILVETVGVGQSE--------T--AVADLTDFFLVLMLPGAGDELQGI----------KKGIFELADMIAVNKADDGDG  204 (323)
T ss_dssp             CEEEEEECSSSSCH--------H--HHHTTSSEEEEEECSCC------C----------CTTHHHHCSEEEEECCSTTCC
T ss_pred             CeEEEeehhhhhhh--------h--hhhcccceEEEEeeccchhhhhhh----------hhhHhhhhheeeEeccccccc
Confidence            46777777764321        1  223458999999998876543322          222223445899999999887


Q ss_pred             HhHHHHHHHHHHh----c---------CCCccccCccCCHHHHHHHHhh
Q 021615          238 RDRLQSLTEEILK----I---------GCDKVTSETELSSEDAVKSLST  273 (310)
Q Consensus       238 ~~~~~~l~~~l~~----~---------g~~~~sa~~~~gi~~l~~~l~~  273 (310)
                      ..........+..    .         .+..+|+.++.|++++.+.+..
T Consensus       205 ~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~  253 (323)
T d2qm8a1         205 ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIED  253 (323)
T ss_dssp             HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHH
Confidence            6544444333321    1         1333899999999999988754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.49  E-value=6.8e-08  Score=81.47  Aligned_cols=59  Identities=27%  Similarity=0.294  Sum_probs=39.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCC-CCC---C----CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAK-PDI---A----DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  171 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~-~~i---~----~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~  171 (310)
                      ....+++|.+|||||||+|+|.+.. ..+   +    .-..||.......+.           ....++||||+.+..
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~-----------~gg~iiDTPG~r~~~  161 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFD-----------FGGYVVDTPGFANLE  161 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECT-----------TSCEEESSCSSTTCC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEEC-----------CCcEEEeCCcccccc
Confidence            4568999999999999999998763 222   1    123355555544432           145899999997764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.21  E-value=2.3e-07  Score=78.40  Aligned_cols=57  Identities=28%  Similarity=0.279  Sum_probs=34.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCCC-C---CCC----CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAKP-D---IAD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  171 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~~-~---i~~----~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~  171 (310)
                      ...+++|++|||||||+|+|.+... .   ++.    --.||........  +          .-.|+||||+.+..
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~--~----------gg~iiDTPG~r~~~  162 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT--S----------GGLVADTPGFSSLE  162 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE--T----------TEEEESSCSCSSCC
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEec--C----------CCEEEECCcccccc
Confidence            4578999999999999999998641 1   211    1124443333221  1          23688999998764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.02  E-value=1.2e-05  Score=66.77  Aligned_cols=97  Identities=14%  Similarity=0.092  Sum_probs=53.5

Q ss_pred             ceEEEeCCCCCccccCCchHH--HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLG--RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~--~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .++++||||..........+.  ..+. ..-..+-+++|+|++...  +....+.......      .+--++++|.|-.
T Consensus        96 d~IlIDTaGr~~~~~~~~~~~el~~~~-~~~~~~~~~LVl~a~~~~--~~~~~~~~~~~~~------~~~~lI~TKlDet  166 (211)
T d1j8yf2          96 EIIIVDTAGRHGYGEEAALLEEMKNIY-EAIKPDEVTLVIDASIGQ--KAYDLASKFNQAS------KIGTIIITKMDGT  166 (211)
T ss_dssp             SEEEEECCCSCCTTCHHHHHHHHHHHH-HHHCCSEEEEEEEGGGGG--GHHHHHHHHHHHC------TTEEEEEECTTSC
T ss_pred             ceEEEecCCcCccchhhHHHHHHHHHH-hhcCCceEEEEEecccCc--chHHHHhhhhccc------CcceEEEecccCC
Confidence            689999999743321101111  1122 223457789999987532  3333333333321      2334679999987


Q ss_pred             CcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615          236 EARDRLQSLTEEILKIGCDKVTSETELSSED  266 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~  266 (310)
                      ..   .-.+.......+++..-...|+++++
T Consensus       167 ~~---~G~~l~~~~~~~lPi~~it~Gq~v~D  194 (211)
T d1j8yf2         167 AK---GGGALSAVAATGATIKFIGTGEKIDE  194 (211)
T ss_dssp             SC---HHHHHHHHHTTTCCEEEEECSSSTTC
T ss_pred             Cc---ccHHHHHHHHHCcCEEEEeCCCCccc
Confidence            54   34445555666776655556666643

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.84  E-value=1.5e-05  Score=66.31  Aligned_cols=97  Identities=15%  Similarity=0.053  Sum_probs=51.0

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhh-----cCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRR-----TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI  232 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~-----~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~  232 (310)
                      .++++||||..........--..+.+.+..     .+-.++|+|+...  .++...+.......      .+--++++|.
T Consensus        95 d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~------~~~~lI~TKl  166 (213)
T d1vmaa2          95 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV------NVTGIILTKL  166 (213)
T ss_dssp             SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS------CCCEEEEECG
T ss_pred             CEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc------CCceEEEecc
Confidence            689999999754422111111222222221     3568899998742  33444443333322      2345778999


Q ss_pred             CCCCcHhHHHHHHHHHHhcCCCccccCccCCHH
Q 021615          233 DLPEARDRLQSLTEEILKIGCDKVTSETELSSE  265 (310)
Q Consensus       233 Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~  265 (310)
                      |-...-   -.+.......+++..-..+|+.++
T Consensus       167 De~~~~---G~~l~~~~~~~~Pi~~i~~Gq~v~  196 (213)
T d1vmaa2         167 DGTAKG---GITLAIARELGIPIKFIGVGEKAE  196 (213)
T ss_dssp             GGCSCT---THHHHHHHHHCCCEEEEECSSSGG
T ss_pred             cCCCcc---cHHHHHHHHHCCCEEEEeCCCCcc
Confidence            975432   223334445556554444666664

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=8.3e-06  Score=68.37  Aligned_cols=25  Identities=40%  Similarity=0.495  Sum_probs=21.1

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ++-.+|.|+-|||||||+++++...
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhcC
Confidence            3457889999999999999998753

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.82  E-value=1.6e-05  Score=68.56  Aligned_cols=84  Identities=19%  Similarity=0.201  Sum_probs=59.9

Q ss_pred             HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC--Ccc
Q 021615          179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKV  256 (310)
Q Consensus       179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~--~~~  256 (310)
                      +++.+.++.+|++++|+|+..+.+..+-     .+..+-   .++|.|+|+||+|+.+. +..+.+.+.+...++  ..+
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~~-----~l~~~~---~~Kp~IlVlNK~DLv~~-~~~~~w~~~f~~~~~~~i~i   77 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDIL---KNKPRIMLLNKADKADA-AVTQQWKEHFENQGIRSLSI   77 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHC---SSSCEEEEEECGGGSCH-HHHHHHHHHHHTTTCCEEEC
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCCH-----HHHHHH---cCCCeEEEEECccCCch-HHHHHHHHHHHhcCCcccee
Confidence            4556789999999999999876554432     122221   26899999999999975 446677777775443  347


Q ss_pred             ccCccCCHHHHHHHH
Q 021615          257 TSETELSSEDAVKSL  271 (310)
Q Consensus       257 sa~~~~gi~~l~~~l  271 (310)
                      ++..+.+..++...+
T Consensus        78 sa~~~~~~~~~~~~~   92 (273)
T d1puja_          78 NSVNGQGLNQIVPAS   92 (273)
T ss_dssp             CTTTCTTGGGHHHHH
T ss_pred             ecccCCCccccchhh
Confidence            888888887776554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=4.3e-05  Score=63.28  Aligned_cols=94  Identities=16%  Similarity=0.110  Sum_probs=51.1

Q ss_pred             ceEEEeCCCCCccccCCchHHHH---HHHHhhh-----cCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEE
Q 021615          158 EATLADLPGLIEGAHLGKGLGRN---FLRHLRR-----TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL  229 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~---~~~~l~~-----~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~  229 (310)
                      .+.++||||.....   ..+-.+   +.+.++.     .+-+++|+|+...  .++...+.......      .+--+++
T Consensus        93 d~ilIDTaGr~~~d---~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~------~~~~lIl  161 (211)
T d2qy9a2          93 DVLIADTAGRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV------GLTGITL  161 (211)
T ss_dssp             SEEEECCCCCGGGH---HHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHS------CCCEEEE
T ss_pred             CEEEeccCCCcccc---HHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhcc------CCceEEE
Confidence            57999999964432   111222   2222322     3578899998753  23333333333321      2345778


Q ss_pred             eCCCCCCcHhHHHHHHHHHHhcCCCccccCccCCHH
Q 021615          230 NKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSE  265 (310)
Q Consensus       230 NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~  265 (310)
                      +|.|-...-   =.+.......+++..-...|+.++
T Consensus       162 TKlDe~~~~---G~~l~~~~~~~~Pi~~i~~Gq~v~  194 (211)
T d2qy9a2         162 TKLDGTAKG---GVIFSVADQFGIPIRYIGVGERIE  194 (211)
T ss_dssp             ECCTTCTTT---THHHHHHHHHCCCEEEEECSSSGG
T ss_pred             eecCCCCCc---cHHHHHHHHHCCCEEEEeCCCCcc
Confidence            999976542   233344455566655555666664

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.66  E-value=7.2e-05  Score=61.74  Aligned_cols=69  Identities=17%  Similarity=0.181  Sum_probs=38.5

Q ss_pred             ceEEEeCCCCCccccCCchHHHH---HHHHhh-----hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEE
Q 021615          158 EATLADLPGLIEGAHLGKGLGRN---FLRHLR-----RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL  229 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~---~~~~l~-----~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~  229 (310)
                      .++++||||.....   ..+-..   +.+.+.     ..+-+++|+|+....  ++...........      .+--+++
T Consensus        90 d~ilIDTaGr~~~d---~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~------~~~~lI~  158 (207)
T d1okkd2          90 DLLFVDTAGRLHTK---HNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAV------GLTGVIV  158 (207)
T ss_dssp             SEEEECCCCCCTTC---HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHH------CCSEEEE
T ss_pred             CEEEcCccccchhh---HHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc--hHHHHHHHhhhcc------CCceEEE
Confidence            68999999975432   222222   222222     246789999988643  3333333333322      2335678


Q ss_pred             eCCCCCCc
Q 021615          230 NKIDLPEA  237 (310)
Q Consensus       230 NK~Dl~~~  237 (310)
                      +|.|-...
T Consensus       159 TKlDet~~  166 (207)
T d1okkd2         159 TKLDGTAK  166 (207)
T ss_dssp             ECTTSSCC
T ss_pred             eccCCCCC
Confidence            99997643

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00018  Score=61.93  Aligned_cols=92  Identities=17%  Similarity=0.047  Sum_probs=51.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcCCCCC--CC-CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchH
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHAKPDI--AD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGL  177 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~~~~i--~~-~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l  177 (310)
                      +.-|+++|+..+|||+|+|.|++.....  ++ ...+|........+..   ..  -...+.++||.|+..... ....-
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~---~~--~~~~~~~lDteG~~~~~~~~~~~~  106 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP---KK--PGHILVLLDTEGLGDVEKGDNQND  106 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS---SS--TTCEEEEEEECCBCCGGGCCCTTH
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeecc---CC--CCceEEEEecccccccccccchhH
Confidence            4568999999999999999999876322  11 1123332222111111   11  123689999999976432 11112


Q ss_pred             HHHHHHHhhhcCEEEEecccC
Q 021615          178 GRNFLRHLRRTRLLVHVIDAA  198 (310)
Q Consensus       178 ~~~~~~~l~~~d~il~VvD~s  198 (310)
                      .+.|.-.+--++++||-+...
T Consensus       107 ~~i~~l~~llSs~~i~N~~~~  127 (277)
T d1f5na2         107 SWIFALAVLLSSTFVYNSIGT  127 (277)
T ss_dssp             HHHHHHHHHHCSEEEEEEESC
T ss_pred             HHHHHHHHHHhCEEEEecccc
Confidence            233333344578777766543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.48  E-value=0.00021  Score=58.84  Aligned_cols=84  Identities=14%  Similarity=0.058  Sum_probs=45.2

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHH--HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFL--RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  235 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~--~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  235 (310)
                      .+.++||||......   .+-..+.  ......+-+++|+|+...  .+............     + .-=++++|.|-.
T Consensus        94 d~vlIDTaGr~~~d~---~~~~el~~~~~~~~~~~~llv~~a~~~--~~~~~~~~~f~~~~-----~-~~~~I~TKlDe~  162 (207)
T d1ls1a2          94 DLILVDTAGRLQIDE---PLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKV-----G-VTGLVLTKLDGD  162 (207)
T ss_dssp             CEEEEECCCCSSCCH---HHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHT-----C-CCEEEEECGGGC
T ss_pred             cceeecccccchhhh---hhHHHHHHHHhhcCCceEEEEeccccc--hhHHHHHHHHHhhC-----C-CCeeEEeecCcc
Confidence            689999999754422   2222221  223456888999998754  33334333333222     1 234778999975


Q ss_pred             CcHhHHHHHHHHHHhcCCCc
Q 021615          236 EARDRLQSLTEEILKIGCDK  255 (310)
Q Consensus       236 ~~~~~~~~l~~~l~~~g~~~  255 (310)
                      ..-   -.+.......+.+.
T Consensus       163 ~~~---G~~l~~~~~~~~Pi  179 (207)
T d1ls1a2         163 ARG---GAALSARHVTGKPI  179 (207)
T ss_dssp             SSC---HHHHHHHHHHCCCE
T ss_pred             ccc---hHHHHHHHHHCCCE
Confidence            432   23333334445443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.38  E-value=3.9e-05  Score=60.82  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +||+|+|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            47999999999999999999874

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=9.1e-05  Score=57.88  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      +|-++|+|++|||||||++.|..
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            45689999999999999999985

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.15  E-value=7.9e-05  Score=59.76  Aligned_cols=41  Identities=32%  Similarity=0.447  Sum_probs=31.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEee
Q 021615          105 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLD  145 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~  145 (310)
                      |+|+|++|||||||++.|....+.. ...+.||..|..+..+
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~   46 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVD   46 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCB
T ss_pred             EEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccC
Confidence            7899999999999999998776554 4456778777665544

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00012  Score=58.74  Aligned_cols=42  Identities=24%  Similarity=0.382  Sum_probs=31.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeC
Q 021615          105 VGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDG  146 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~  146 (310)
                      |+|+|++|+|||||++.|....+..  ...+.||..+..+..++
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G   49 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENG   49 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccC
Confidence            8899999999999999999776543  45667888777776654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.09  E-value=0.00012  Score=57.26  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=22.8

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..+++|+|+|+|||||||+.+.|...
T Consensus         2 m~~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           2 MLLPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            34789999999999999999999754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00016  Score=61.07  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=29.1

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.++..-.|+|+|++|||||||++.|.+-.
T Consensus        20 ~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          20 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3456677777889999999999999999999874

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00012  Score=60.19  Aligned_cols=42  Identities=29%  Similarity=0.392  Sum_probs=33.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCC--C-CCCCCceeeccceEeeC
Q 021615          105 VGLVGLPNAGKSTLLAAITHAKPD--I-ADYPFTTLMPNLGRLDG  146 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~~~--i-~~~~~tT~~~~~~~v~~  146 (310)
                      |+|+|++|||||||++.|....+.  . ...+.||..|..+..++
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G   49 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHG   49 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBT
T ss_pred             EEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCcccccc
Confidence            789999999999999999987653  2 34567888877766554

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.00015  Score=58.47  Aligned_cols=41  Identities=32%  Similarity=0.422  Sum_probs=31.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEee
Q 021615          105 VGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLD  145 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~  145 (310)
                      |+|+|++|||||||++.|....+..  ...+.||..|..+..+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~   46 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVN   46 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCB
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcC
Confidence            8899999999999999998776542  3445677766665443

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.94  E-value=0.0002  Score=58.65  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=27.2

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.++..--++|+|+.|||||||++.|++..
T Consensus        19 ~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          19 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             ceEEEEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            344555666679999999999999999999864

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00021  Score=60.59  Aligned_cols=34  Identities=32%  Similarity=0.342  Sum_probs=29.1

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.++..-.++|||++|||||||++.|.+-.
T Consensus        31 ~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          31 QGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eceEEEEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            4556677777789999999999999999999875

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.92  E-value=0.00022  Score=60.56  Aligned_cols=34  Identities=32%  Similarity=0.385  Sum_probs=28.4

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.++..-.++|||++|||||||++.|.+-.
T Consensus        32 ~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          32 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             eceEEEEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            3455666677789999999999999999999864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.90  E-value=0.00022  Score=56.12  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .+|+|.|+||||||||.++|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999999865

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.0019  Score=53.45  Aligned_cols=81  Identities=17%  Similarity=0.117  Sum_probs=54.3

Q ss_pred             hhcCEEEEecccCCCCc-HHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--c--CCCccccCc
Q 021615          186 RRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--I--GCDKVTSET  260 (310)
Q Consensus       186 ~~~d~il~VvD~s~~~~-~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~--g~~~~sa~~  260 (310)
                      .+.|.+++|+.+..++. ...++.++-....     .+.|.++|+||+|+.+..+ .+.+.+.+..  .  .+..+|+++
T Consensus         9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~-----~~i~pvIvlnK~DL~~~~~-~~~~~~~~~~~~~~~~v~~vSa~~   82 (225)
T d1u0la2           9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYDEDD-LRKVRELEEIYSGLYPIVKTSAKT   82 (225)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHH-HHHHHHHHHHHTTTSCEEECCTTT
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----cCCCEEEEEeCcccCCHHH-HHHHHHhhcccccceeEEEecccc
Confidence            46799999998876543 3333433333333     4789999999999987543 3444444432  2  233489999


Q ss_pred             cCCHHHHHHHHh
Q 021615          261 ELSSEDAVKSLS  272 (310)
Q Consensus       261 ~~gi~~l~~~l~  272 (310)
                      +.|++++...+.
T Consensus        83 ~~g~~~L~~~l~   94 (225)
T d1u0la2          83 GMGIEELKEYLK   94 (225)
T ss_dssp             CTTHHHHHHHHS
T ss_pred             chhHhhHHHHhc
Confidence            999999998874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.89  E-value=0.00025  Score=59.28  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=26.8

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...--++++|++|||||||++.|.+-.
T Consensus        23 ~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ceEEEEcCCCEEEEECCCCCCcchhhHhccCCC
Confidence            344555566679999999999999999999864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.87  E-value=0.00018  Score=60.74  Aligned_cols=34  Identities=15%  Similarity=0.235  Sum_probs=28.2

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.+...-.|+|+|++|||||||++.|.+-.
T Consensus        19 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3455566667789999999999999999999864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00031  Score=58.81  Aligned_cols=33  Identities=33%  Similarity=0.341  Sum_probs=27.1

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...--++++|++|||||||++.+.+-.
T Consensus        18 ~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          18 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            344555666679999999999999999999875

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.85  E-value=0.00032  Score=58.91  Aligned_cols=33  Identities=27%  Similarity=0.320  Sum_probs=27.5

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...--++++|++|||||||++.|.+-.
T Consensus        24 ~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          24 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             ceeEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            445566666679999999999999999999875

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.00034  Score=60.29  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=29.4

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.+.+.++..-.|+|+|++|||||||++.|.|.-
T Consensus        53 ~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          53 KNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             eCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            4566677777889999999999999999999864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.78  E-value=0.00037  Score=58.57  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=27.8

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.++..--++++|++|||||||++.|.+-.
T Consensus        21 ~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             ceeeEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            455566666679999999999999999999875

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.00021  Score=57.87  Aligned_cols=41  Identities=39%  Similarity=0.425  Sum_probs=31.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEee
Q 021615          105 VGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLD  145 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~  145 (310)
                      |+|+|++|||||||.+.|....+..  ...+.||..+..+...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~   45 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEED   45 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCB
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCcc
Confidence            8899999999999999998765543  4566778776666543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.74  E-value=0.00036  Score=54.76  Aligned_cols=20  Identities=30%  Similarity=0.459  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 021615          105 VGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~  124 (310)
                      ++|+|++|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999999874

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.72  E-value=0.00039  Score=58.53  Aligned_cols=33  Identities=33%  Similarity=0.369  Sum_probs=27.4

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.++..--++++|++|||||||++.|+|-.
T Consensus        24 ~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeeEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            444556666679999999999999999999875

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.0004  Score=58.36  Aligned_cols=33  Identities=27%  Similarity=0.408  Sum_probs=27.2

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...--++++|++|||||||++.|.|-.
T Consensus        23 ~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          23 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEECSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            344556666679999999999999999999875

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.67  E-value=0.00038  Score=58.06  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=27.0

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.+...--++++|++|||||||++.|.|-.
T Consensus        18 ~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             eeEEEECCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            344555555669999999999999999999975

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.66  E-value=0.00048  Score=57.86  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=27.3

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.++..--++|+|+.|||||||++.|+|..
T Consensus        20 ~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          20 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cceeEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444555666679999999999999999999875

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.65  E-value=0.00067  Score=56.91  Aligned_cols=23  Identities=35%  Similarity=0.355  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      -++++|++|||||||++.|.|-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            37899999999999999999875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.64  E-value=0.00028  Score=59.99  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=29.3

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.++..-.|+|+|++|||||||++.|.+-.
T Consensus        35 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          35 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             eceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            4566677778889999999999999999999864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.63  E-value=0.00032  Score=59.04  Aligned_cols=33  Identities=21%  Similarity=0.400  Sum_probs=28.1

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.++..-.++++|++|||||||++.|.+-.
T Consensus        23 ~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             ceEEEECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            455666677779999999999999999999975

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.61  E-value=0.00054  Score=58.13  Aligned_cols=33  Identities=24%  Similarity=0.259  Sum_probs=27.3

Q ss_pred             ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .+.+.++..--++|+|+.|||||||++.|+|..
T Consensus        22 ~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          22 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ceEEEECCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            444555666679999999999999999999975

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.55  E-value=0.00061  Score=57.88  Aligned_cols=34  Identities=26%  Similarity=0.398  Sum_probs=28.1

Q ss_pred             eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.++..--++|+|++|||||||++.|.|-.
T Consensus        19 ~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          19 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            3455566666679999999999999999999875

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.49  E-value=0.00089  Score=55.78  Aligned_cols=82  Identities=21%  Similarity=0.223  Sum_probs=54.5

Q ss_pred             hhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---HHHHHHHHHhcCCC--ccccC
Q 021615          186 RRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEILKIGCD--KVTSE  259 (310)
Q Consensus       186 ~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~l~~~l~~~g~~--~~sa~  259 (310)
                      .+.|.+++|+++.++. ....++.++-....     .+.+.++|+||+|+.+..+.   ...+.+....+|+.  .+|++
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~-----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~   83 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEA-----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSK   83 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHHHHHHT-----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred             cccCEEEEEEECCCCCCCHHHHHHHHHHHHH-----cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecC
Confidence            4679899999887654 33344433333332     47888999999999876443   23344445555554  48999


Q ss_pred             ccCCHHHHHHHHh
Q 021615          260 TELSSEDAVKSLS  272 (310)
Q Consensus       260 ~~~gi~~l~~~l~  272 (310)
                      ++.|++++...|.
T Consensus        84 ~~~gl~~L~~~l~   96 (231)
T d1t9ha2          84 DQDSLADIIPHFQ   96 (231)
T ss_dssp             HHTTCTTTGGGGT
T ss_pred             ChhHHHHHHHhhc
Confidence            9999988887764

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.44  E-value=0.00076  Score=51.54  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 021615          105 VGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~  125 (310)
                      |.+.|+||||||||.+.|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            678999999999999999754

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.43  E-value=0.0073  Score=50.66  Aligned_cols=83  Identities=8%  Similarity=0.095  Sum_probs=46.7

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPE  236 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~  236 (310)
                      .+.++|||+-......      ...-....||.++.+++... ........+.+.+..+.... +.+ .-+|+|+.+...
T Consensus       117 D~viiD~p~~~~~~~~------~~~~~~~~ad~vliv~~~~~-~sl~~~~~~~~~i~~~~~~~-~~~~~~vv~N~~~~~~  188 (269)
T d1cp2a_         117 DYVFYDVLGDVVCGGF------AMPIREGKAQEIYIVASGEM-MALYAANNISKGIQKYAKSG-GVRLGGIICNSRKVAN  188 (269)
T ss_dssp             SEEEEEEECSSCSTTT------THHHHTTSCCEEEEEECSSH-HHHHHHHHHHHHHHHHBTTB-BCEEEEEEEECCSSSC
T ss_pred             CEEEeccCCccchhHH------HHHHHhhccCceeeccchhh-hHHHHHHHHHHHHHhhcccc-ceeccceEEeeecCCC
Confidence            5899999976543211      11222345888888887642 33333344445555443211 222 347889999887


Q ss_pred             cHhHHHHHHHHH
Q 021615          237 ARDRLQSLTEEI  248 (310)
Q Consensus       237 ~~~~~~~l~~~l  248 (310)
                      ..+..+.+.+.+
T Consensus       189 ~~~~~~~~~~~~  200 (269)
T d1cp2a_         189 EYELLDAFAKEL  200 (269)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             ccchhhhhHhhc
Confidence            665555555544

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.00037  Score=58.32  Aligned_cols=32  Identities=41%  Similarity=0.376  Sum_probs=26.8

Q ss_pred             hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      +.++++..--++++|++|||||||++.|+|-.
T Consensus        18 isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             EEEEEETTCEEECBCCTTSSHHHHHHHHHTSC
T ss_pred             EEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44566666679999999999999999999864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.38  E-value=0.00081  Score=54.20  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 021615          105 VGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~  125 (310)
                      |+++|.||||||||.++|...
T Consensus         5 i~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           5 IVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999853

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.34  E-value=0.001  Score=51.86  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=21.5

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..+|+|.|+|||||||+.+.|...
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHH
Confidence            467999999999999999999864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.23  E-value=0.0012  Score=52.02  Aligned_cols=23  Identities=43%  Similarity=0.605  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ++|+|+|+|||||||+...|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999754

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.22  E-value=0.0012  Score=51.65  Aligned_cols=23  Identities=43%  Similarity=0.621  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      |+|+++|+|||||||+-+.|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999999754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0012  Score=51.55  Aligned_cols=22  Identities=36%  Similarity=0.540  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|.|.|+||+|||||+..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999998743

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.19  E-value=0.0012  Score=51.02  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 021615          105 VGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~  125 (310)
                      |+|.|+|||||||+.+.|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999865

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.0019  Score=54.97  Aligned_cols=78  Identities=18%  Similarity=0.259  Sum_probs=43.4

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  180 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~  180 (310)
                      ....+++||+||+|||+++..|...-.. ...|..-                  .+..+.-.|+..++.+......+...
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri~~-~~vp~~l------------------~~~~i~~l~~~~liag~~~~g~~e~r   98 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRIVQ-GDVPEVM------------------ADCTIYSLDIGSLLAGTKYRGDFEKR   98 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHH-TCSCGGG------------------TTCEEEECCCC---CCCCCSSCHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHHHh-CCccccc------------------ccceeEEeeechHhccCccchhHHHH
Confidence            4467999999999999999998754200 0000000                  01245666776676655443444433


Q ss_pred             ---HHHHhhhcCEEEEeccc
Q 021615          181 ---FLRHLRRTRLLVHVIDA  197 (310)
Q Consensus       181 ---~~~~l~~~d~il~VvD~  197 (310)
                         .+..+...+-+++++|-
T Consensus        99 ~~~i~~~~~~~~~iIlfiDe  118 (268)
T d1r6bx2          99 FKALLKQLEQDTNSILFIDE  118 (268)
T ss_dssp             HHHHHHHHSSSSCEEEEETT
T ss_pred             HHHHHHHhhccCCceEEecc
Confidence               34445556666667663

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.11  E-value=0.0015  Score=51.77  Aligned_cols=23  Identities=39%  Similarity=0.593  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ++|+|+|+|||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.03  E-value=0.0016  Score=50.95  Aligned_cols=20  Identities=25%  Similarity=0.376  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 021615          105 VGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~  124 (310)
                      |+|.|.|||||||+.+.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.01  E-value=0.0019  Score=51.83  Aligned_cols=24  Identities=29%  Similarity=0.542  Sum_probs=21.7

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .++|+|+|+|||||||+-..|...
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999999864

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.95  E-value=0.0019  Score=50.20  Aligned_cols=25  Identities=24%  Similarity=0.252  Sum_probs=21.2

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHc
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      +.++-|.|+|.|||||||+-++|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999988874

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.92  E-value=0.0021  Score=50.75  Aligned_cols=23  Identities=35%  Similarity=0.458  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ++|+|+|+|||||||+...|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999854

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.002  Score=50.80  Aligned_cols=23  Identities=35%  Similarity=0.398  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ++|+|+|+|||||||..+.|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.90  E-value=0.0023  Score=50.98  Aligned_cols=24  Identities=29%  Similarity=0.381  Sum_probs=21.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .++|+|+|+|||||||+...|...
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999853

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.85  E-value=0.0021  Score=51.25  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ++|.|+|+|||||||+...|...
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999754

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.0022  Score=48.79  Aligned_cols=22  Identities=36%  Similarity=0.436  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|.|+|++||||||+-+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.84  E-value=0.017  Score=46.80  Aligned_cols=65  Identities=15%  Similarity=0.154  Sum_probs=42.9

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPE  236 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~i-vv~NK~Dl~~  236 (310)
                      .++++|+|+....         .....+..+|.+++|+..+. ....+...+.+.++.     .+.|++ +|+||.|...
T Consensus       113 d~IiiD~~~~~~~---------~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~-----~~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         113 DFILIDCPAGLQL---------DAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLKK-----AGLAILGFVLNRYGRSD  177 (237)
T ss_dssp             SEEEEECCSSSSH---------HHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHHH-----TTCEEEEEEEEEETSCT
T ss_pred             CEEEEcccccccc---------cchhhhhhhhcccccccccc-eecchhhHHHHHHhh-----hhhhhhhhhhccccccc
Confidence            6899999986432         23455678999999998753 233444445555555     355654 7899998764


Q ss_pred             c
Q 021615          237 A  237 (310)
Q Consensus       237 ~  237 (310)
                      .
T Consensus       178 ~  178 (237)
T d1g3qa_         178 R  178 (237)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.82  E-value=0.0023  Score=49.66  Aligned_cols=21  Identities=38%  Similarity=0.574  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 021615          105 VGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~  125 (310)
                      |+|.|+|||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999764

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.75  E-value=0.0023  Score=51.07  Aligned_cols=22  Identities=36%  Similarity=0.398  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -|+|+|+|||||||+...|...
T Consensus         8 iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           8 VVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.71  E-value=0.0024  Score=50.46  Aligned_cols=21  Identities=43%  Similarity=0.509  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 021615          104 DVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~  124 (310)
                      -|+++|.|||||||+...+..
T Consensus        16 liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          16 VVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.032  Score=46.69  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-+.+.|+||+|||++.+++...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            44899999999999999999864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.67  E-value=0.0031  Score=49.83  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .+|+|+|+|||||||+...|...
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0027  Score=49.19  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 021615          105 VGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~  125 (310)
                      ++|+|+|||||||+.+.|...
T Consensus         9 ivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.60  E-value=0.0029  Score=50.02  Aligned_cols=21  Identities=33%  Similarity=0.626  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 021615          104 DVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~  124 (310)
                      -|+|-|++|||||||.+.|..
T Consensus        24 iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999974

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.57  E-value=0.0032  Score=48.92  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +|+|+|+|||||||+-..|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.56  E-value=0.0031  Score=48.80  Aligned_cols=21  Identities=29%  Similarity=0.388  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 021615          105 VGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~  125 (310)
                      |.|.|+|||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            667799999999999999875

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.54  E-value=0.004  Score=49.77  Aligned_cols=28  Identities=29%  Similarity=0.312  Sum_probs=23.3

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .++...-|.|+|+|||||||+...|...
T Consensus         4 ~~~~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           4 KLKKSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             HHHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3455566889999999999999999864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.44  E-value=0.046  Score=44.70  Aligned_cols=25  Identities=24%  Similarity=0.238  Sum_probs=21.3

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..+.+.+.|+||+||||++.++...
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            3456899999999999999998754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.38  E-value=0.0042  Score=54.24  Aligned_cols=29  Identities=21%  Similarity=0.237  Sum_probs=24.6

Q ss_pred             hhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615           98 ILRVVADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus        98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      -.+....|++.|.+|+|||||+++|++.-
T Consensus       162 ~v~~~~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             HHHHTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             HHHhCCCEEEEeeccccchHHHHHHhhhc
Confidence            34556789999999999999999999764

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.33  E-value=0.036  Score=44.74  Aligned_cols=74  Identities=16%  Similarity=0.167  Sum_probs=42.3

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA  237 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  237 (310)
                      .+.|+|+|+....         .....+..+|.+++|++... ............+..+.    ..++-+|+||.+....
T Consensus       111 D~viiD~~~~~~~---------~~~~~l~~ad~v~~v~~~~~-~~~~~~~~~~~~~~~~~----~~~~~iv~N~~~~~~~  176 (232)
T d1hyqa_         111 DILLLDAPAGLER---------SAVIAIAAAQELLLVVNPEI-SSITDGLKTKIVAERLG----TKVLGVVVNRITTLGI  176 (232)
T ss_dssp             SEEEEECCSSSSH---------HHHHHHHHSSEEEEEECSSH-HHHHHHHHHHHHHHHHT----CEEEEEEEEEECTTTH
T ss_pred             ceeeecccccccc---------hhHHHhhhhheeeeeccccc-cchhhhhhhhhhhhhcc----cccccccccccccccc
Confidence            4799999986532         22234557999999988753 22333333444444432    1234578999876544


Q ss_pred             HhHHHHHH
Q 021615          238 RDRLQSLT  245 (310)
Q Consensus       238 ~~~~~~l~  245 (310)
                      +...+.+.
T Consensus       177 ~~~~~~i~  184 (232)
T d1hyqa_         177 EMAKNEIE  184 (232)
T ss_dssp             HHHHHHHH
T ss_pred             cchhhhHH
Confidence            33333343

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0043  Score=49.35  Aligned_cols=23  Identities=39%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +.|+|+|+|||||||....|...
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.26  E-value=0.0037  Score=52.14  Aligned_cols=21  Identities=38%  Similarity=0.490  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 021615          105 VGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~  125 (310)
                      |.|.|+||+|||||..+|.+.
T Consensus        35 ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          35 FLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999875

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.11  E-value=0.0052  Score=48.04  Aligned_cols=20  Identities=40%  Similarity=0.624  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 021615          105 VGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~  124 (310)
                      |+|.|.+||||||+.+.|..
T Consensus         4 ivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45679999999999999964

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.11  E-value=0.0054  Score=48.93  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +-|+|+|+|||||||+...|...
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0031  Score=49.88  Aligned_cols=23  Identities=39%  Similarity=0.475  Sum_probs=19.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHc
Q 021615          102 VADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      ...|.|+|+|||||||+-+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999964

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.97  E-value=0.0062  Score=50.11  Aligned_cols=24  Identities=38%  Similarity=0.574  Sum_probs=21.4

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .+.+.+.|+||+||||+.+.+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=94.92  E-value=0.0068  Score=47.26  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|.++|+|||||||+-+.|...
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999743

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.76  E-value=0.023  Score=50.57  Aligned_cols=25  Identities=24%  Similarity=0.539  Sum_probs=20.6

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHc
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      +.-.++++||+||||||+++..|..
T Consensus        41 ~~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          41 RTKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCCCeEECCCCCCHHHHHHHHHH
Confidence            3445699999999999999977764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.71  E-value=0.037  Score=46.47  Aligned_cols=23  Identities=35%  Similarity=0.479  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-|.+.|+||+|||+|.+++.+.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            45899999999999999999875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.65  E-value=0.0082  Score=49.27  Aligned_cols=24  Identities=38%  Similarity=0.494  Sum_probs=21.3

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .+.+.+.|+||+||||+.+.|...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            467999999999999999999854

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.009  Score=48.22  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +-|||.|.+|||||||.+.|...
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            34899999999999999999753

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.012  Score=47.39  Aligned_cols=26  Identities=23%  Similarity=0.511  Sum_probs=22.0

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +....+.+||+||+|||+++..|...
T Consensus        41 ~~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCCeEEEecCCcccHHHHHHHHHH
Confidence            34568999999999999999988753

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.39  E-value=0.091  Score=44.09  Aligned_cols=83  Identities=7%  Similarity=0.055  Sum_probs=41.9

Q ss_pred             ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCC
Q 021615          158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPE  236 (310)
Q Consensus       158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~  236 (310)
                      .+.++|||+.......      ...-....++.++.+..... ........+.+.+..+... .+.+ ..+|.|+.+...
T Consensus       120 D~iiiD~pp~~~~~~~------~~~~~~~~a~~vlv~~~~~~-~s~~~~~~~~~~i~~~~~~-~~~~~~gvv~n~~~~~~  191 (289)
T d2afhe1         120 DFVFYDVLGDVVCGGF------AMPIRENKAQEIYIVCSGEM-MAMYAANNISKGIVKYANS-GSVRLGGLICNSRNTDR  191 (289)
T ss_dssp             SEEEEEEECSSCCTTT------THHHHTTCCCEEEEEECSSH-HHHHHHHHHHHHHHHHHTT-SCCEEEEEEEECCCCTT
T ss_pred             CeEeeccCCccCHHHH------HHHHHhhccceeecccchhH-HHHHHHHHHHHHHHhhhhc-ccccccceeehhhcchh
Confidence            6799999876543221      11112235677776665432 2233334444444433211 1233 247899988765


Q ss_pred             cHhHHHHHHHHH
Q 021615          237 ARDRLQSLTEEI  248 (310)
Q Consensus       237 ~~~~~~~l~~~l  248 (310)
                      ..+..+.+.+.+
T Consensus       192 ~~~~~~~~~~~~  203 (289)
T d2afhe1         192 EDELIIALANKL  203 (289)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHc
Confidence            544445555443

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.92  E-value=0.018  Score=46.83  Aligned_cols=25  Identities=24%  Similarity=0.399  Sum_probs=21.8

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..+.+.+.|+||+||||++..|...
T Consensus        44 ~~~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          44 SMPHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4567999999999999999999764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.88  E-value=0.016  Score=47.75  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..+.|.|+||+||||+++.|...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999854

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.72  E-value=0.015  Score=48.39  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .|.+.|+||+|||+|.+++.+.
T Consensus        42 ~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhc
Confidence            5999999999999999999864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.71  E-value=0.017  Score=47.50  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      ..+.+.|+||+||||++.+|.+.-
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999999998753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=93.67  E-value=0.016  Score=45.77  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +-|||.|.+||||||+.+.|...
T Consensus         4 ~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            45899999999999999998653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.60  E-value=0.017  Score=47.67  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=19.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-|+|.|++|+|||||++.+...
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Confidence            45788999999999999998753

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.47  E-value=0.018  Score=49.63  Aligned_cols=24  Identities=13%  Similarity=0.333  Sum_probs=21.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..-|+++||||+|||.|.++|.+.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            355999999999999999999864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=93.26  E-value=0.023  Score=45.45  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      |-|+|.|+|||||||+-..|...
T Consensus         4 piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            45778899999999999999764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.19  E-value=0.0053  Score=48.20  Aligned_cols=19  Identities=47%  Similarity=0.489  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 021615          105 VGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~  123 (310)
                      .+|+|+.|||||||+.+|.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4578999999999999985

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.13  E-value=0.022  Score=47.41  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -|.+.|+||+|||+|.++|.+.
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            4899999999999999999964

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.12  E-value=0.016  Score=45.85  Aligned_cols=23  Identities=26%  Similarity=0.235  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-|+|-|..||||||+++.|...
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999865

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.08  E-value=0.027  Score=45.30  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|-|+|||||||+-..|...
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45888899999999999999754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.05  E-value=0.013  Score=48.57  Aligned_cols=21  Identities=29%  Similarity=0.351  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 021615          105 VGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~  125 (310)
                      +.+.|+||+|||++++++...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999999864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.00  E-value=0.026  Score=45.78  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=21.2

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..+.+.+.|+||+||||++..+...
T Consensus        32 ~~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          32 NLPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             TCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCChHHHHHHHHHH
Confidence            3456899999999999999999754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.91  E-value=0.03  Score=45.30  Aligned_cols=26  Identities=19%  Similarity=0.409  Sum_probs=22.1

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...+.+.+.|+||+||||++..|...
T Consensus        33 ~~~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          33 GKLPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             TCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCChhHHHHHHHHH
Confidence            34567899999999999999999864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=92.90  E-value=0.029  Score=45.38  Aligned_cols=24  Identities=38%  Similarity=0.480  Sum_probs=20.2

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      ...-|-+.|.||||||||-+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            334588999999999999999974

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.89  E-value=0.025  Score=47.28  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-|.+.|+||+|||+|++++.+.
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            34999999999999999999975

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.47  E-value=0.032  Score=44.39  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHc
Q 021615          104 DVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~  124 (310)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388899999999999998874

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.43  E-value=0.034  Score=44.99  Aligned_cols=24  Identities=25%  Similarity=0.531  Sum_probs=20.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      ..+.+.+.|+||+||||+.+.|..
T Consensus        35 ~~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          35 NMPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCchhhHHHHHH
Confidence            346789999999999999998864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=92.26  E-value=0.035  Score=44.62  Aligned_cols=22  Identities=36%  Similarity=0.353  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -|||.|.+||||||+.+.|...
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            4899999999999999988744

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.15  E-value=0.029  Score=50.07  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=18.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~  123 (310)
                      ..++|+|.+|+|||+++..++
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            469999999999999987765

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.87  E-value=0.028  Score=47.60  Aligned_cols=19  Identities=37%  Similarity=0.630  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 021615          105 VGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~  123 (310)
                      -+|+|+.|+||||++.+|.
T Consensus        27 nvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            4789999999999999984

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=91.84  E-value=0.042  Score=44.02  Aligned_cols=22  Identities=36%  Similarity=0.424  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -|||.|..||||||+.+.|...
T Consensus         4 iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            4899999999999999988643

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=91.48  E-value=0.054  Score=47.63  Aligned_cols=22  Identities=32%  Similarity=0.268  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -+++.|+||+|||+|.++|.+.
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.46  E-value=0.05  Score=43.52  Aligned_cols=20  Identities=30%  Similarity=0.456  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 021615          105 VGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~  124 (310)
                      |++-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999999874

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.053  Score=42.45  Aligned_cols=23  Identities=13%  Similarity=0.215  Sum_probs=19.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-+.|.|+||+|||+|...|...
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHH
Confidence            34789999999999999988754

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=91.16  E-value=0.06  Score=42.36  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 021615          105 VGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~  126 (310)
                      |++.|++|+||||+.-.|....
T Consensus        17 vl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          17 VLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHcC
Confidence            8899999999999999988653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=91.15  E-value=0.05  Score=46.77  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=20.0

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      ..+-|||.|.++||||||.+.|..
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHH
Confidence            345699999999999999888753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.69  E-value=0.066  Score=45.48  Aligned_cols=21  Identities=24%  Similarity=0.102  Sum_probs=18.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~  123 (310)
                      .=|||-|.+|||||||...|.
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeECCCCCCHHHHHHHHH
Confidence            348999999999999988774

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.68  E-value=0.047  Score=43.89  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -+++.|+||+|||+|.++|.+.
T Consensus        55 ~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          55 CLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHH
Confidence            4899999999999999998754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=90.65  E-value=0.071  Score=41.94  Aligned_cols=22  Identities=27%  Similarity=0.288  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 021615          105 VGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~~  126 (310)
                      |++.|++|+|||||...|...-
T Consensus        18 vli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          18 VLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHcC
Confidence            8899999999999999998653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.63  E-value=0.058  Score=47.37  Aligned_cols=19  Identities=32%  Similarity=0.648  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 021615          105 VGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~  123 (310)
                      -+|+|+.|+||||++.+|.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4688999999999999984

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.38  E-value=0.041  Score=44.60  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..|+|-|..||||||+++.|...
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.22  E-value=0.08  Score=42.57  Aligned_cols=20  Identities=35%  Similarity=0.423  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 021615          105 VGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~  124 (310)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999998888764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.14  E-value=0.069  Score=47.55  Aligned_cols=21  Identities=33%  Similarity=0.306  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 021615          105 VGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~  125 (310)
                      |.+.|++|+||||++.+++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            889999999999999999875

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=89.96  E-value=0.083  Score=41.21  Aligned_cols=23  Identities=22%  Similarity=0.202  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcCC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      =|++.|++|+||||+.-.|...-
T Consensus        17 gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            38899999999999998888664

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.65  E-value=0.08  Score=47.79  Aligned_cols=22  Identities=14%  Similarity=0.409  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~  124 (310)
                      .+|+++||||||||-|.++|..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999986

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=89.61  E-value=0.046  Score=47.15  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~  124 (310)
                      -.|.++|+||+|||+|.++|.+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            3699999999999999999975

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.60  E-value=0.048  Score=46.37  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=16.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHc
Q 021615          103 ADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~  124 (310)
                      +-|+|.|.+||||||+.++|..
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHH
Confidence            4599999999999999998754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.14  E-value=0.088  Score=42.26  Aligned_cols=24  Identities=25%  Similarity=0.203  Sum_probs=20.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..-+.|.|+||+|||+|...+.-.
T Consensus        34 G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          34 GSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            345889999999999999998744

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=89.02  E-value=0.11  Score=43.68  Aligned_cols=22  Identities=32%  Similarity=0.545  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -+.+.|++++|||+|+++|...
T Consensus       106 ~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         106 TIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4788999999999999999864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.02  E-value=0.12  Score=43.34  Aligned_cols=24  Identities=21%  Similarity=0.139  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcCC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHAK  126 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~~  126 (310)
                      .-|+|+|.+|.|||||...+.+..
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhh
Confidence            358899999999999999987654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.95  E-value=0.13  Score=41.54  Aligned_cols=23  Identities=22%  Similarity=0.231  Sum_probs=19.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHcC
Q 021615          103 ADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .-+.|.|+||+|||+|...+...
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            34889999999999999888744

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=87.87  E-value=0.14  Score=41.38  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=20.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..-+.|.|+||+|||+|...+...
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            345889999999999999888754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=87.68  E-value=0.14  Score=42.32  Aligned_cols=19  Identities=21%  Similarity=0.242  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 021615          105 VGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~  123 (310)
                      ++|.|+||+|||||+..+.
T Consensus        38 ~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            7788999999999987775

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=87.45  E-value=0.15  Score=41.33  Aligned_cols=22  Identities=27%  Similarity=0.255  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -|||.|..||||||..+.|...
T Consensus         3 iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3899999999999999999754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=87.44  E-value=0.21  Score=38.39  Aligned_cols=22  Identities=36%  Similarity=0.314  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -|++-|.-|||||||++.+...
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCccHHHHHHHHHhh
Confidence            4788999999999999999855

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=87.40  E-value=0.15  Score=40.77  Aligned_cols=22  Identities=14%  Similarity=0.241  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      -+.|.|+||+|||+|...+...
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4788999999999999998754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.32  E-value=0.15  Score=41.12  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 021615          105 VGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~  125 (310)
                      |+|=|..||||||+++.|...
T Consensus         5 IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           5 LSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            677899999999999999864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.31  E-value=0.15  Score=41.04  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 021615          105 VGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~  125 (310)
                      +.+.|++|+|||-|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999865

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=86.85  E-value=0.17  Score=43.33  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHcC
Q 021615          104 DVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       104 ~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .++++|+||+|||.|...|...
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhh
Confidence            5889999999999999999753

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.49  E-value=0.18  Score=40.41  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 021615          105 VGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       105 V~lvG~~naGKSSLln~L~~~  125 (310)
                      |++=|..||||||+++.|...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            888999999999999998743

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=86.29  E-value=0.18  Score=43.43  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=19.2

Q ss_pred             cCeEEE-EcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGL-VGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~l-vG~~naGKSSLln~L~~~  125 (310)
                      ...+.+ +|+||+|||.|.++|.+.
T Consensus       122 ~~g~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         122 ASGMVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             ESEEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHHH
Confidence            334555 699999999999999864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.44  E-value=0.24  Score=39.84  Aligned_cols=24  Identities=21%  Similarity=0.184  Sum_probs=20.2

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ..-+.|.|+||+|||+|...+...
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            345889999999999999988753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=85.36  E-value=0.22  Score=40.99  Aligned_cols=21  Identities=33%  Similarity=0.284  Sum_probs=17.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHH
Q 021615          103 ADVGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       103 ~~V~lvG~~naGKSSLln~L~  123 (310)
                      .-+.|.|+||+|||||+-.|.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            346789999999999998775

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.25  E-value=0.22  Score=36.35  Aligned_cols=25  Identities=12%  Similarity=0.020  Sum_probs=22.3

Q ss_pred             hccCeEEEEcCCCCcHHHHHHHHHc
Q 021615          100 RVVADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       100 ~~~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      +..+.|.+-|.+|+|||||-++|..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            5678899999999999999999964

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=85.19  E-value=0.25  Score=43.22  Aligned_cols=24  Identities=17%  Similarity=0.394  Sum_probs=21.0

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHc
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~  124 (310)
                      ....+.++|++|||||-|.++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            356799999999999999999864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.02  E-value=0.26  Score=39.22  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=19.6

Q ss_pred             cCe-EEEEcCCCCcHHHHHHHHHc
Q 021615          102 VAD-VGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       102 ~~~-V~lvG~~naGKSSLln~L~~  124 (310)
                      ++. +.+.|++|+||||+...+..
T Consensus        23 l~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          23 GHHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCeEEEEECCCCCcHHHHHHHHHH
Confidence            344 88999999999999998765

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=84.91  E-value=0.24  Score=39.23  Aligned_cols=22  Identities=14%  Similarity=0.128  Sum_probs=17.8

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHH
Q 021615          102 VADVGLVGLPNAGKSTLLAAIT  123 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~  123 (310)
                      ..-+.|.|+||+|||+|...++
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3447889999999999987654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.88  E-value=0.28  Score=39.81  Aligned_cols=23  Identities=13%  Similarity=0.287  Sum_probs=19.1

Q ss_pred             cCe-EEEEcCCCCcHHHHHHHHHc
Q 021615          102 VAD-VGLVGLPNAGKSTLLAAITH  124 (310)
Q Consensus       102 ~~~-V~lvG~~naGKSSLln~L~~  124 (310)
                      .+. +.+.|++|+||||+...+..
T Consensus        33 ~~~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          33 IHHAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeeEEEECCCCCcHHHHHHHHHH
Confidence            344 78889999999999998764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=83.02  E-value=0.23  Score=42.81  Aligned_cols=25  Identities=20%  Similarity=0.177  Sum_probs=20.7

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .+.+|.|=|.-|+||||+++.|...
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC-
T ss_pred             CceEEEEECCcCCCHHHHHHHHHHH
Confidence            3456889999999999999999753

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=82.31  E-value=0.37  Score=40.63  Aligned_cols=25  Identities=32%  Similarity=0.359  Sum_probs=21.5

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      .+-+++|+|.+|+|||+|+..+...
T Consensus        42 rGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          42 RGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             TTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            4458999999999999999988753

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=82.04  E-value=0.25  Score=41.11  Aligned_cols=15  Identities=13%  Similarity=0.286  Sum_probs=12.9

Q ss_pred             EEEEcCCCCcHHHHH
Q 021615          105 VGLVGLPNAGKSTLL  119 (310)
Q Consensus       105 V~lvG~~naGKSSLl  119 (310)
                      +.|+|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            778999999999654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=80.82  E-value=0.42  Score=41.12  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=21.7

Q ss_pred             ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          101 VVADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       101 ~~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      ...+|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            3457899999999999999999865

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=80.65  E-value=0.32  Score=41.87  Aligned_cols=24  Identities=29%  Similarity=0.284  Sum_probs=21.0

Q ss_pred             cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615          102 VADVGLVGLPNAGKSTLLAAITHA  125 (310)
Q Consensus       102 ~~~V~lvG~~naGKSSLln~L~~~  125 (310)
                      +.+|.|=|.-||||||+++.|...
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999999875

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=80.27  E-value=0.36  Score=40.49  Aligned_cols=15  Identities=20%  Similarity=0.370  Sum_probs=13.0

Q ss_pred             EEEEcCCCCcHHHHH
Q 021615          105 VGLVGLPNAGKSTLL  119 (310)
Q Consensus       105 V~lvG~~naGKSSLl  119 (310)
                      +.|.|.||+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999654