Citrus Sinensis ID: 021627

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

MALKAVHVSDVPNLDQVPGNVTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELK

cccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHccccEEEEEEEEEccccEEEEccccccccccccEEEcccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHcccccEEEEcccccccccccccccHHHHHHHHHHccccEEEcccccccccHHHHHHHHHcccEEEEEcccc

cccccEEEcccccccccEEEEEEEEEEEEccccccccccccccccccccccEEEEEccccccccccccHHHHHccHHHHHHHHHHHHccccEEEEEEEEEccccEEEEEcEEEEEcccccEEcccccHcHHHHHHHcccccccccccccHHHHcccccccccccccccccccHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHHHcccccEcccHHHHHHcHHHHHHHHHcccEEEEEcccc

malkavhvsdvpnldqvpgnvtlnylhsprvckgvnedcdetksgykfpkfvvmghrgsgmnmlqSSDQRMKSIKENTILSFNaaarhpldfiefdvqvtrdgcpvifhdnfiftkdegEIIEKRVTDITLAEFlsygpqndpenvgkpmlrktkdgrifewkvekdtplcTLQEAFEKVdqsvgfnvelkfddqlVYTEEELTHALEAILKVVFEHaqgrpimfssfQPDAALLIRKLQstypvffltnggaqtctDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELK

malkavhvsdvpnldqvpgNVTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDnfiftkdegeIIEKRVTDITLAEFlsygpqndpenvgkpmlrktkdgrifeWKVEKDTPLCTLQEAFEkvdqsvgfNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFknpgaikkikeaklclvsygelk

************NLDQVPGNVTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGH********************NTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYG****************KDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSY****

******HVSDVPNLDQVPGNVTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSS***M*SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPEN*****L*KTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELK

********SDVPNLDQVPGNVTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELK

**LKAVHVSDVPNLDQVPGNVTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQN******K*********RIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELK

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		310	2.2.26 [Sep-21-2011]
Q02979		1223	Glycerophosphodiester pho	yes	no	0.796	0.201	0.303	6e-31
Q9C104		1076	Glycerophosphodiester pho	yes	no	0.867	0.25	0.294	2e-26
Q10003		796	Putative glycerophosphoch	yes	no	0.774	0.301	0.326	9e-25
Q80VJ4		672	Glycerophosphocholine pho	yes	no	0.822	0.379	0.270	6e-23
Q8C0L9		675	Glycerophosphocholine pho	yes	no	0.822	0.377	0.270	1e-22
Q9NPB8		672	Glycerophosphocholine pho	yes	no	0.854	0.394	0.268	1e-22
Q74ZH9		1321	Glycerophosphodiester pho	yes	no	0.451	0.105	0.353	3e-21
Q21407		690	Putative glycerophosphoch	no	no	0.754	0.339	0.291	2e-19
P37965		293	Glycerophosphoryl diester	yes	no	0.635	0.672	0.228	3e-08

>sp\|Q02979\|GDE1_YEAST Glycerophosphodiester phosphodiesterase GDE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDE1 PE=1 SV=1	Back alignment and function desciption

 Score =  134 bits (338), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 145/320 (45%), Gaps = 73/320 (22%)

Query: 53   VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNF 112
            V+GHRG G N    S Q    I ENT+ SF  AA     ++EFDVQ+T+D  PV++HD  
Sbjct: 874  VIGHRGLGKNNPNKSLQ----IGENTVESFIMAASLGASYVEFDVQLTKDNVPVVYHD-- 927

Query: 113  IFTKDEGEIIEKRVTDITLAEFLSY----------GPQNDPENV-GKPMLRKTKDGRIFE 161
                + G  ++  + ++TL +FL            G  + P +V G     +   GR  +
Sbjct: 928  FLVAETG--VDIPMHELTLEQFLDLNNADKEHIQRGAGHSPHHVNGADTALQKYRGRSVD 985

Query: 162  ----------WKVEKDTP-------------------------------------LCTLQ 174
                      W +  + P                                       TL+
Sbjct: 986  DSDVSTLRRAWDLHDNDPNGKSNNAHWSDNRMRLTKTFKKNNFKGNARGHSIASSFVTLK 1045

Query: 175  EAFEKVDQSVGFNVELKF-------DDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSS 227
            E F+K+  +VGFN+E KF       +++L     E+ H ++ +LKVVF++A GR I+FSS
Sbjct: 1046 ELFKKIPANVGFNIECKFPMLDEAEEEELGQIMMEMNHWVDTVLKVVFDNANGRDIIFSS 1105

Query: 228  FQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF 287
            F PD  +++   Q   P+ FLT GG++   D+R SSL   I+      L GIVS    I 
Sbjct: 1106 FHPDICIMLSLKQPVIPILFLTEGGSEQMADLRASSLQNGIRFAKKWNLLGIVSAAAPIL 1165

Query: 288  KNPGAIKKIKEAKLCLVSYG 307
            K P  ++ +K   L  V+YG
Sbjct: 1166 KAPRLVQVVKSNGLVCVTYG 1185

Glycerophosphocholine glycerophosphodiesterase responsible for the hydrolysis of intracellular glycerophosphocholine into glycerol-phosphate and choline. The choline is used for phosphatidyl-choline synthesis. Required for utilization of glycerophosphocholine as phosphate source.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4EC: 6

>sp\|Q9C104\|GDE1_SCHPO Glycerophosphodiester phosphodiesterase gde1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gde1 PE=1 SV=1	Back alignment and function description

>sp\|Q10003\|GPC1A_CAEEL Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog T05H10.7 OS=Caenorhabditis elegans GN=T05H10.7 PE=2 SV=1	Back alignment and function description

>sp\|Q80VJ4\|GPCP1_RAT Glycerophosphocholine phosphodiesterase GPCPD1 OS=Rattus norvegicus GN=Gpcpd1 PE=2 SV=1	Back alignment and function description

>sp\|Q8C0L9\|GPCP1_MOUSE Glycerophosphocholine phosphodiesterase GPCPD1 OS=Mus musculus GN=Gpcpd1 PE=1 SV=1	Back alignment and function description

>sp\|Q9NPB8\|GPCP1_HUMAN Glycerophosphocholine phosphodiesterase GPCPD1 OS=Homo sapiens GN=GPCPD1 PE=1 SV=2	Back alignment and function description

>sp\|Q74ZH9\|GDE1_ASHGO Glycerophosphodiester phosphodiesterase GDE1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=GDE1 PE=3 SV=2	Back alignment and function description

>sp\|Q21407\|GPC1B_CAEEL Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog K10B3.6 OS=Caenorhabditis elegans GN=K10B3.6 PE=2 SV=2	Back alignment and function description

>sp\|P37965\|GLPQ_BACSU Glycerophosphoryl diester phosphodiesterase OS=Bacillus subtilis (strain 168) GN=glpQ PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		310
224053531		388	predicted protein [Populus trichocarpa]	0.996	0.796	0.706	1e-128
255547608		388	glycerophosphodiester phosphodiesterase,	0.990	0.791	0.714	1e-128
296082305		372	unnamed protein product [Vitis vinifera]	0.980	0.817	0.660	1e-119
225451535		382	PREDICTED: glycerophosphodiester phospho	0.980	0.795	0.660	1e-119
224129260		382	predicted protein [Populus trichocarpa]	0.980	0.795	0.650	1e-118
224055783		372	predicted protein [Populus trichocarpa]	0.948	0.790	0.640	1e-117
449460535		390	PREDICTED: glycerophosphodiester phospho	0.980	0.779	0.644	1e-116
255543649		383	glycerophosphodiester phosphodiesterase,	0.977	0.791	0.638	1e-113
356561440		381	PREDICTED: glycerophosphodiester phospho	0.977	0.795	0.640	1e-113
356571595		381	PREDICTED: glycerophosphodiester phospho	0.977	0.795	0.640	1e-113

>gi\|224053531\|ref\|XP_002297859.1\| predicted protein [Populus trichocarpa] gi\|222845117\|gb\|EEE82664.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/310 (70%), Positives = 262/310 (84%), Gaps = 1/310 (0%)

Query: 1   MALKAVHVSDVPNLDQVPGNVTLNYLHSPRVCKGVN-EDCDETKSGYKFPKFVVMGHRGS 59
           MALKA HVSDVP LDQV  N  L    S  + + VN E  D+TK G+KF KFVVMGHRGS
Sbjct: 1   MALKAAHVSDVPKLDQVQENAALALCSSRLITQCVNIEGSDDTKRGFKFGKFVVMGHRGS 60

Query: 60  GMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEG 119
           GMNMLQS D+RMKSIKEN+ILSF +A++ PLDFIEFDVQVT+D CPVIFHDNFI T+ +G
Sbjct: 61  GMNMLQSCDRRMKSIKENSILSFISASKLPLDFIEFDVQVTKDDCPVIFHDNFILTEHKG 120

Query: 120 EIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEK 179
           E+IEKRVTD+TL EF SYGPQ++  + GK + +KTKDGRIFEWKVE+D P CTLQE F++
Sbjct: 121 ELIEKRVTDLTLDEFRSYGPQDEGGSEGKSLFKKTKDGRIFEWKVEEDAPFCTLQEVFQR 180

Query: 180 VDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKL 239
           VD ++GFNVELKFDD ++Y EEEL H L+ IL+VVFEHA+ RP+MFSSFQPDAALL+RKL
Sbjct: 181 VDDTMGFNVELKFDDNIIYKEEELKHILQVILQVVFEHAKERPVMFSSFQPDAALLMRKL 240

Query: 240 QSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA 299
           QSTYPVFFLTNGG++  TDVRR+SLDEAIKVC  GGLQGIVSEV+A+F+NPGA+ +IKE+
Sbjct: 241 QSTYPVFFLTNGGSEIYTDVRRNSLDEAIKVCTEGGLQGIVSEVKAVFRNPGAVTRIKES 300

Query: 300 KLCLVSYGEL 309
           KL L++YG+L
Sbjct: 301 KLSLITYGQL 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255547608\|ref\|XP_002514861.1\| glycerophosphodiester phosphodiesterase, putative [Ricinus communis] gi\|223545912\|gb\|EEF47415.1\| glycerophosphodiester phosphodiesterase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|296082305\|emb\|CBI21310.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225451535\|ref\|XP_002273468.1\| PREDICTED: glycerophosphodiester phosphodiesterase GDE1 [Vitis vinifera] gi\|147820259\|emb\|CAN71478.1\| hypothetical protein VITISV_038621 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224129260\|ref\|XP_002328930.1\| predicted protein [Populus trichocarpa] gi\|222839360\|gb\|EEE77697.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224055783\|ref\|XP_002298651.1\| predicted protein [Populus trichocarpa] gi\|222845909\|gb\|EEE83456.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449460535\|ref\|XP_004148001.1\| PREDICTED: glycerophosphodiester phosphodiesterase gde1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255543649\|ref\|XP_002512887.1\| glycerophosphodiester phosphodiesterase, putative [Ricinus communis] gi\|223547898\|gb\|EEF49390.1\| glycerophosphodiester phosphodiesterase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356561440\|ref\|XP_003548989.1\| PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356571595\|ref\|XP_003553962.1\| PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like isoform 1 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		310
TAIR\|locus:2169278		370	GDPD3 "glycerophosphodiester p	0.925	0.775	0.653	4.1e-97
TAIR\|locus:2078603		361	SRG3 "senescence-related gene	0.838	0.720	0.624	3.4e-94
TAIR\|locus:2163031		374	GDPD2 "glycerophosphodiester p	0.951	0.788	0.574	4.3e-93
ASPGD\|ASPL0000060537		1205	AN0137 [Emericella nidulans (t	0.448	0.115	0.410	1.7e-35
SGD\|S000006031		1223	GDE1 "Glycerophosphocholine (G	0.438	0.111	0.391	1.9e-32
DICTYBASE\|DDB_G0290085		1560	DDB_G0290085 "Glycerophosphodi	0.438	0.087	0.404	6.2e-32
CGD\|CAL0002940		1162	orf19.3936 [Candida albicans (	0.438	0.117	0.409	2e-31
UNIPROTKB\|Q5AK84		1162	CaO19.3936 "Putative uncharact	0.438	0.117	0.409	2e-31
POMBASE\|SPAPB1E7.05		1076	gde1 "glycerophosphoryl dieste	0.451	0.130	0.358	1.1e-25
FB\|FBgn0031566		707	CG2818 [Drosophila melanogaste	0.8	0.350	0.307	5.7e-24

TAIR\|locus:2169278 GDPD3 "glycerophosphodiester phosphodiesterase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 189/289 (65%), Positives = 227/289 (78%)

Query:    21 VTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTIL 80
             +TL+   S  +  GV ED D+ +    FPKFV+MGHRG GMNMLQS D++MK IKEN++L
Sbjct:     6 MTLSLSSSAMLSSGVVED-DKKQEAIVFPKFVLMGHRGFGMNMLQSPDEKMKFIKENSLL 64

Query:    81 SFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQ 140
             SFN AA  P+DFIEFDVQVTRDGCPVIFHD F+FT+++G IIEKRVT++ L EFLSYGPQ
Sbjct:    65 SFNVAADFPIDFIEFDVQVTRDGCPVIFHDIFMFTQEQGVIIEKRVTEMDLHEFLSYGPQ 124

Query:   141 NDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTE 200
              D  NV KPM RKTKDGRIFEWKVEKD PLCTL++AF  V  S+GFN+ELKFDD  VY E
Sbjct:   125 RDGTNV-KPMWRKTKDGRIFEWKVEKDDPLCTLEDAFLNVKHSLGFNIELKFDDNTVYGE 183

Query:   201 EELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVR 260
              EL   L+ IL VV EH++ RPI+FSSF PDAA LIR +Q  YPVFFLTNGG +   DVR
Sbjct:   184 GELRQTLDNILTVVNEHSKNRPIIFSSFHPDAARLIRNMQRCYPVFFLTNGGCEIYKDVR 243

Query:   261 RSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGEL 309
             R+SLDEAIK+C   GLQG+VSEV+AI + P AI ++K++KL L+SYG+L
Sbjct:   244 RNSLDEAIKLCKESGLQGLVSEVKAILRTPNAITRVKDSKLSLLSYGQL 292

GO:0005737 "cytoplasm" evidence=ISM

GO:0006071 "glycerol metabolic process" evidence=IEA;ISS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

GO:0008889 "glycerophosphodiester phosphodiesterase activity" evidence=IEA;ISS

TAIR\|locus:2078603 SRG3 "senescence-related gene 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2163031 GDPD2 "glycerophosphodiester phosphodiesterase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000060537 AN0137 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

SGD\|S000006031 GDE1 "Glycerophosphocholine (GroPCho) phosphodiesterase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0290085 DDB_G0290085 "Glycerophosphodiester phosphodiesterase GDE1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

CGD\|CAL0002940 orf19.3936 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5AK84 CaO19.3936 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

POMBASE\|SPAPB1E7.05 gde1 "glycerophosphoryl diester phosphodiesterase Gde1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

FB\|FBgn0031566 CG2818 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.4	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00010505	hypothetical protein (388 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		310
cd08605		282	cd08605, GDPD_GDE5_like_1_plant, Glycerophosphodie	1e-123
cd08572		293	cd08572, GDPD_GDE5_like, Glycerophosphodiester pho	1e-98
cd08606		286	cd08606, GDPD_YPL110cp_fungi, Glycerophosphodieste	3e-50
cd08607		290	cd08607, GDPD_GDE5, Glycerophosphodiester phosphod	8e-50
pfam03009		238	pfam03009, GDPD, Glycerophosphoryl diester phospho	7e-38
COG0584		257	COG0584, UgpQ, Glycerophosphoryl diester phosphodi	2e-21
cd08562		229	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester p	2e-18
cd08556		189	cd08556, GDPD, Glycerophosphodiester phosphodieste	7e-18
cd08563		230	cd08563, GDPD_TtGDE_like, Glycerophosphodiester ph	5e-17
cd08568		226	cd08568, GDPD_TmGDE_like, Glycerophosphodiester ph	2e-16
cd08582		233	cd08582, GDPD_like_2, Glycerophosphodiester phosph	2e-15
cd08575		264	cd08575, GDPD_GDE4_like, Glycerophosphodiester pho	8e-13
cd08566		240	cd08566, GDPD_AtGDE_like, Glycerophosphodiester ph	1e-12
cd08567		263	cd08567, GDPD_SpGDE_like, Glycerophosphodiester ph	8e-12
cd08585		237	cd08585, GDPD_like_3, Glycerophosphodiester phosph	2e-11
cd08579		220	cd08579, GDPD_memb_like, Glycerophosphodiester pho	4e-10
cd08564		265	cd08564, GDPD_GsGDE_like, Glycerophosphodiester ph	6e-10
cd08573		258	cd08573, GDPD_GDE1, Glycerophosphodiester phosphod	1e-09
cd08561		249	cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glyceropho	2e-09
cd08581		229	cd08581, GDPD_like_1, Glycerophosphodiester phosph	4e-09
cd08565		235	cd08565, GDPD_pAtGDE_like, Glycerophosphodiester p	5e-09
cd08570		234	cd08570, GDPD_YPL206cp_fungi, Glycerophosphodieste	2e-08
cd08559		296	cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic g	3e-07
cd08601		256	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester p	6e-07
cd08578		300	cd08578, GDPD_NUC-2_fungi, Putative glycerophospho	8e-07
cd08612		300	cd08612, GDPD_GDE4, Glycerophosphodiester phosphod	2e-06
PRK09454		249	PRK09454, ugpQ, cytoplasmic glycerophosphodiester	1e-05
cd08580		263	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester	1e-05
cd08574		252	cd08574, GDPD_GDE_2_3_6, Glycerophosphodiester pho	2e-05
cd08613		309	cd08613, GDPD_GDE4_like_1, Glycerophosphodiester p	4e-05
cd08610		316	cd08610, GDPD_GDE6, Glycerophosphodiester phosphod	1e-04
cd08600		318	cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester p	2e-04
cd08602		309	cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester	3e-04
cd08609		315	cd08609, GDPD_GDE3, Glycerophosphodiester phosphod	3e-04
cd08608		351	cd08608, GDPD_GDE2, Glycerophosphodiester phosphod	7e-04
cd08555		179	cd08555, PI-PLCc_GDPD_SF, Catalytic domain of phos	0.002

>gnl\|CDD\|176547 cd08605, GDPD_GDE5_like_1_plant, Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5	Back alignment and domain information

 Score =  354 bits (910), Expect = e-123
 Identities = 129/259 (49%), Positives = 166/259 (64%), Gaps = 1/259 (0%)

Query: 52  VVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDN 111
            V+GHRG GMN           I+ENTI SF AA++   DF+EFDVQVTRDG PVI+HD+
Sbjct: 1   AVIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDD 60

Query: 112 FIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPML-RKTKDGRIFEWKVEKDTPL 170
           FI  +  GE+   R+ D+TLAE  + GPQ +        L RK KD     W ++ +  +
Sbjct: 61  FIVVERGGEVESSRIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSI 120

Query: 171 CTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQP 230
            TL+E F +V  S+GFN+ELKF D      EEL   L AIL V  +HA GR IMFSSF P
Sbjct: 121 PTLEEVFSEVPPSLGFNIELKFGDDNKTEAEELVRELRAILAVCKQHAPGRRIMFSSFDP 180

Query: 231 DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNP 290
           DAA+L+R LQS YPV FLT+ G  T  D RR+S++ AI+V L GGLQGIVSEV+ + +NP
Sbjct: 181 DAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAIQVALEGGLQGIVSEVKVLLRNP 240

Query: 291 GAIKKIKEAKLCLVSYGEL 309
            A+  +K + L L +YG+L
Sbjct: 241 TAVSLVKASGLELGTYGKL 259

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs. Length = 282

>gnl\|CDD\|176514 cd08572, GDPD_GDE5_like, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins	Back alignment and domain information

>gnl\|CDD\|176548 cd08606, GDPD_YPL110cp_fungi, Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins	Back alignment and domain information

>gnl\|CDD\|176549 cd08607, GDPD_GDE5, Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins	Back alignment and domain information

>gnl\|CDD\|217317 pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase family	Back alignment and domain information

>gnl\|CDD\|223657 COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|176505 cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins	Back alignment and domain information

>gnl\|CDD\|176499 cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins	Back alignment and domain information

>gnl\|CDD\|176506 cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	Back alignment and domain information

>gnl\|CDD\|176511 cd08568, GDPD_TmGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins	Back alignment and domain information

>gnl\|CDD\|176524 cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>gnl\|CDD\|176517 cd08575, GDPD_GDE4_like, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins	Back alignment and domain information

>gnl\|CDD\|176509 cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins	Back alignment and domain information

>gnl\|CDD\|176510 cd08567, GDPD_SpGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins	Back alignment and domain information

>gnl\|CDD\|176527 cd08585, GDPD_like_3, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>gnl\|CDD\|176521 cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>gnl\|CDD\|176507 cd08564, GDPD_GsGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins	Back alignment and domain information

>gnl\|CDD\|176515 cd08573, GDPD_GDE1, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins	Back alignment and domain information

>gnl\|CDD\|176504 cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins	Back alignment and domain information

>gnl\|CDD\|176523 cd08581, GDPD_like_1, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>gnl\|CDD\|176508 cd08565, GDPD_pAtGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins	Back alignment and domain information

>gnl\|CDD\|176512 cd08570, GDPD_YPL206cp_fungi, Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins	Back alignment and domain information

>gnl\|CDD\|176502 cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins	Back alignment and domain information

>gnl\|CDD\|176543 cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	Back alignment and domain information

>gnl\|CDD\|176520 cd08578, GDPD_NUC-2_fungi, Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins	Back alignment and domain information

>gnl\|CDD\|176553 cd08612, GDPD_GDE4, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins	Back alignment and domain information

>gnl\|CDD\|236524 PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|176522 cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	Back alignment and domain information

>gnl\|CDD\|176516 cd08574, GDPD_GDE_2_3_6, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins	Back alignment and domain information

>gnl\|CDD\|176554 cd08613, GDPD_GDE4_like_1, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4	Back alignment and domain information

>gnl\|CDD\|176552 cd08610, GDPD_GDE6, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins	Back alignment and domain information

>gnl\|CDD\|176542 cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins	Back alignment and domain information

>gnl\|CDD\|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins	Back alignment and domain information

>gnl\|CDD\|176551 cd08609, GDPD_GDE3, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins	Back alignment and domain information

>gnl\|CDD\|176550 cd08608, GDPD_GDE2, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins	Back alignment and domain information

>gnl\|CDD\|176498 cd08555, PI-PLCc_GDPD_SF, Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		310
cd08605		282	GDPD_GDE5_like_1_plant Glycerophosphodiester phosp	100.0
cd08572		293	GDPD_GDE5_like Glycerophosphodiester phosphodieste	100.0
cd08568		226	GDPD_TmGDE_like Glycerophosphodiester phosphodiest	100.0
cd08606		286	GDPD_YPL110cp_fungi Glycerophosphodiester phosphod	100.0
cd08607		290	GDPD_GDE5 Glycerophosphodiester phosphodiesterase	100.0
cd08562		229	GDPD_EcUgpQ_like Glycerophosphodiester phosphodies	100.0
PRK09454		249	ugpQ cytoplasmic glycerophosphodiester phosphodies	100.0
cd08601		256	GDPD_SaGlpQ_like Glycerophosphodiester phosphodies	100.0
cd08559		296	GDPD_periplasmic_GlpQ_like Periplasmic glycerophos	100.0
cd08563		230	GDPD_TtGDE_like Glycerophosphodiester phosphodiest	100.0
cd08564		265	GDPD_GsGDE_like Glycerophosphodiester phosphodiest	100.0
cd08574		252	GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste	100.0
cd08612		300	GDPD_GDE4 Glycerophosphodiester phosphodiesterase	100.0
cd08580		263	GDPD_Rv2277c_like Glycerophosphodiester phosphodie	100.0
cd08573		258	GDPD_GDE1 Glycerophosphodiester phosphodiesterase	100.0
cd08582		233	GDPD_like_2 Glycerophosphodiester phosphodiesteras	100.0
cd08581		229	GDPD_like_1 Glycerophosphodiester phosphodiesteras	100.0
cd08610		316	GDPD_GDE6 Glycerophosphodiester phosphodiesterase	100.0
cd08579		220	GDPD_memb_like Glycerophosphodiester phosphodieste	100.0
cd08567		263	GDPD_SpGDE_like Glycerophosphodiester phosphodiest	100.0
cd08565		235	GDPD_pAtGDE_like Glycerophosphodiester phosphodies	100.0
cd08560		356	GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodi	100.0
cd08585		237	GDPD_like_3 Glycerophosphodiester phosphodiesteras	100.0
cd08609		315	GDPD_GDE3 Glycerophosphodiester phosphodiesterase	100.0
cd08600		318	GDPD_EcGlpQ_like Glycerophosphodiester phosphodies	100.0
cd08571		302	GDPD_SHV3_plant Glycerophosphodiester phosphodiest	100.0
cd08575		264	GDPD_GDE4_like Glycerophosphodiester phosphodieste	100.0
cd08566		240	GDPD_AtGDE_like Glycerophosphodiester phosphodiest	100.0
cd08604		300	GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodi	100.0
cd08608		351	GDPD_GDE2 Glycerophosphodiester phosphodiesterase	100.0
cd08602		309	GDPD_ScGlpQ1_like Glycerophosphodiester phosphodie	100.0
cd08583		237	PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetic	100.0
cd08561		249	GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodieste	100.0
cd08570		234	GDPD_YPL206cp_fungi Glycerophosphodiester phosphod	100.0
cd08578		300	GDPD_NUC-2_fungi Putative glycerophosphodiester ph	100.0
PRK11143		355	glpQ glycerophosphodiester phosphodiesterase; Prov	100.0
cd08603		299	GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodi	100.0
cd08613		309	GDPD_GDE4_like_1 Glycerophosphodiester phosphodies	100.0
PF03009		256	GDPD: Glycerophosphoryl diester phosphodiesterase	100.0
COG0584		257	UgpQ Glycerophosphoryl diester phosphodiesterase [	100.0
cd08556		189	GDPD Glycerophosphodiester phosphodiesterase domai	100.0
cd08555		179	PI-PLCc_GDPD_SF Catalytic domain of phosphoinositi	99.97
cd08584		192	PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetic	99.9
KOG2258		341	consensus Glycerophosphoryl diester phosphodiester	99.84
cd08577		228	PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetic	99.27
KOG2421		417	consensus Predicted starch-binding protein [Genera	98.91
KOG2421		417	consensus Predicted starch-binding protein [Genera	98.51
cd08592		229	PI-PLCc_gamma Catalytic domain of metazoan phospho	98.5
cd08576		265	GDPD_like_SMaseD_PLD Glycerophosphodiester phospho	98.44
cd08627		229	PI-PLCc_gamma1 Catalytic domain of metazoan phosph	98.38
cd08597		260	PI-PLCc_PRIP_metazoa Catalytic domain of metazoan	97.91
smart00148		135	PLCXc Phospholipase C, catalytic domain (part); do	97.86
cd08594		227	PI-PLCc_eta Catalytic domain of metazoan phosphoin	96.93
cd08632		253	PI-PLCc_eta1 Catalytic domain of metazoan phosphoi	96.73
cd08595		257	PI-PLCc_zeta Catalytic domain of metazoan phosphoi	96.71
cd08558		226	PI-PLCc_eukaryota Catalytic domain of eukaryotic p	96.71
cd08633		254	PI-PLCc_eta2 Catalytic domain of metazoan phosphoi	96.71
cd08631		258	PI-PLCc_delta4 Catalytic domain of metazoan phosph	96.7
cd08599		228	PI-PLCc_plant Catalytic domain of plant phosphatid	96.7
cd08596		254	PI-PLCc_epsilon Catalytic domain of metazoan phosp	96.66
cd08628		254	PI-PLCc_gamma2 Catalytic domain of metazoan phosph	96.66
cd08630		258	PI-PLCc_delta3 Catalytic domain of metazoan phosph	96.65
cd08629		258	PI-PLCc_delta1 Catalytic domain of metazoan phosph	96.59
cd08593		257	PI-PLCc_delta Catalytic domain of metazoan phospho	96.58
cd08598		231	PI-PLC1c_yeast Catalytic domain of putative yeast	96.53
cd08626		257	PI-PLCc_beta4 Catalytic domain of metazoan phospho	96.46
cd08623		258	PI-PLCc_beta1 Catalytic domain of metazoan phospho	96.32
cd08624		261	PI-PLCc_beta2 Catalytic domain of metazoan phospho	96.28
cd08591		257	PI-PLCc_beta Catalytic domain of metazoan phosphoi	96.2
PF10223		244	DUF2181: Uncharacterized conserved protein (DUF218	96.11
cd08625		258	PI-PLCc_beta3 Catalytic domain of metazoan phospho	95.85
KOG1264		1267	consensus Phospholipase C [Lipid transport and met	94.96
KOG0169		746	consensus Phosphoinositide-specific phospholipase	94.15
PLN02230		598	phosphoinositide phospholipase C 4	93.89
PF00388		146	PI-PLC-X: Phosphatidylinositol-specific phospholip	93.35
PLN02228		567	Phosphoinositide phospholipase C	93.09
PLN02952		599	phosphoinositide phospholipase C	92.25
cd00137		274	PI-PLCc Catalytic domain of prokaryotic and eukary	91.24
PLN02223		537	phosphoinositide phospholipase C	90.98
PLN02222		581	phosphoinositide phospholipase C 2	90.49
cd08589		324	PI-PLCc_SaPLC1_like Catalytic domain of Streptomyc	89.32
PRK15452		443	putative protease; Provisional	89.12
COG0159		265	TrpA Tryptophan synthase alpha chain [Amino acid t	84.61
PRK13111		258	trpA tryptophan synthase subunit alpha; Provisiona	84.07
COG0826		347	Collagenase and related proteases [Posttranslation	82.25

>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5	Back alignment and domain information

Probab=100.00  E-value=1.2e-46  Score=343.22  Aligned_cols=252  Identities=50%  Similarity=0.786  Sum_probs=191.5

Q ss_pred             EEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHH
Q 021627           53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA  132 (310)
Q Consensus        53 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~  132 (310)
                      +|||||++.+..+..-.-...+||||++||++|++.|||+||+|||+||||++||+||.+++|+++|...++.|.++|++
T Consensus         2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~~~~~V~dlT~~   81 (282)
T cd08605           2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGEVESSRIRDLTLA   81 (282)
T ss_pred             eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCCcCccchhhCcHH
Confidence            79999999754331000012578999999999999999999999999999999999999999999872223899999999


Q ss_pred             HHhccCCCCCCCCCCC--c---ccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHH
Q 021627          133 EFLSYGPQNDPENVGK--P---MLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHAL  207 (310)
Q Consensus       133 el~~l~~~~~~g~~~~--~---~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v  207 (310)
                      ||++++.    |.++.  +   .++.........+....+++||||+|+|+.++.++.+|||||.+.......+.+..++
T Consensus        82 EL~~ld~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~  157 (282)
T cd08605          82 ELKALGP----QAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPSLGFNIELKFGDDNKTEAEELVREL  157 (282)
T ss_pred             HHHhccc----cccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCCccEEEEEecCccccchHHHHHHHH
Confidence            9999953    32210  0   0000000000011112468999999999999878899999998653322223344567


Q ss_pred             HHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccc
Q 021627          208 EAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF  287 (310)
Q Consensus       208 ~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~  287 (310)
                      +.+++.++++++.++++|+||++++|+.+++++|++++++++......+.+.+..++..+..+++..++.++++++..+.
T Consensus       158 ~~v~~~i~~~~~~~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  237 (282)
T cd08605         158 RAILAVCKQHAPGRRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAIQVALEGGLQGIVSEVKVLL  237 (282)
T ss_pred             HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHHHHHHHcCCceEEecHHHhh
Confidence            88999999999889999999999999999999999999999864322222333345566778888999999999887656


Q ss_pred             cChHHHHHHHHhCCEEEeecC
Q 021627          288 KNPGAIKKIKEAKLCLVSYGE  308 (310)
Q Consensus       288 ~~~~lv~~~~~~Gl~v~vwTv  308 (310)
                      +++++|+.+|++|+.|++|||
T Consensus       238 ~~~~~v~~~~~~Gl~v~vWTv  258 (282)
T cd08605         238 RNPTAVSLVKASGLELGTYGK  258 (282)
T ss_pred             cCcHHHHHHHHcCcEEEEeCC
Confidence            799999999999999999998

>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins	Back alignment and domain information

>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins	Back alignment and domain information

>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins	Back alignment and domain information

>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins	Back alignment and domain information

>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins	Back alignment and domain information

>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional	Back alignment and domain information

>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	Back alignment and domain information

>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins	Back alignment and domain information

>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	Back alignment and domain information

>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins	Back alignment and domain information

>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins	Back alignment and domain information

>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins	Back alignment and domain information

>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	Back alignment and domain information

>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins	Back alignment and domain information

>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins	Back alignment and domain information

>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins	Back alignment and domain information

>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins	Back alignment and domain information

>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins	Back alignment and domain information

>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins	Back alignment and domain information

>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins	Back alignment and domain information

>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins	Back alignment and domain information

>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins	Back alignment and domain information

>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins	Back alignment and domain information

>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins	Back alignment and domain information

>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins	Back alignment and domain information

>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins	Back alignment and domain information

>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases	Back alignment and domain information

>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins	Back alignment and domain information

>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins	Back alignment and domain information

>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins	Back alignment and domain information

>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional	Back alignment and domain information

>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins	Back alignment and domain information

>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4	Back alignment and domain information

>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme	Back alignment and domain information

>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]	Back alignment and domain information

>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins	Back alignment and domain information

>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily	Back alignment and domain information

>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases	Back alignment and domain information

>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]	Back alignment and domain information

>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases	Back alignment and domain information

>KOG2421 consensus Predicted starch-binding protein [General function prediction only]	Back alignment and domain information

>KOG2421 consensus Predicted starch-binding protein [General function prediction only]	Back alignment and domain information

>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma	Back alignment and domain information

>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins	Back alignment and domain information

>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1	Back alignment and domain information

>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein	Back alignment and domain information

>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X	Back alignment and domain information

>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta	Back alignment and domain information

>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1	Back alignment and domain information

>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta	Back alignment and domain information

>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins	Back alignment and domain information

>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2	Back alignment and domain information

>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4	Back alignment and domain information

>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C	Back alignment and domain information

>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon	Back alignment and domain information

>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2	Back alignment and domain information

>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3	Back alignment and domain information

>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1	Back alignment and domain information

>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta	Back alignment and domain information

>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C	Back alignment and domain information

>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4	Back alignment and domain information

>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1	Back alignment and domain information

>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2	Back alignment and domain information

>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta	Back alignment and domain information

>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function	Back alignment and domain information

>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3	Back alignment and domain information

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]	Back alignment and domain information

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]	Back alignment and domain information

>PLN02230 phosphoinositide phospholipase C 4	Back alignment and domain information

>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3	Back alignment and domain information

>PLN02228 Phosphoinositide phospholipase C	Back alignment and domain information

>PLN02952 phosphoinositide phospholipase C	Back alignment and domain information

>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	Back alignment and domain information

>PLN02223 phosphoinositide phospholipase C	Back alignment and domain information

>PLN02222 phosphoinositide phospholipase C 2	Back alignment and domain information

>cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins	Back alignment and domain information

>PRK15452 putative protease; Provisional	Back alignment and domain information

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]	Back alignment and domain information

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional	Back alignment and domain information

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		310
3qvq_A		252	The Structure Of An Oleispira Antarctica Phosphodie		1e-08
2pz0_A		252	Crystal Structure Of Glycerophosphodiester Phosphod		5e-05
1o1z_A		234	Crystal Structure Of Glycerophosphodiester Phosphod		1e-04
3i10_A		278	Crystal Structure Of Putative Glycerophosphoryl Die		2e-04

>pdb|3QVQ|A Chain A, The Structure Of An Oleispira Antarctica Phosphodiesterase Olei02445 In Complex With The Product Sn-Glycerol-3-Phosphate Length = 252

Back alignment and structure

Iteration: 1

Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 41/188 (21%) Query: 43 KSGYKF-PKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTR 101 +S Y F P+ V+ HRGS ENT+ S + A + + ++E DV ++ Sbjct: 3 QSAYSFLPQ--VIAHRGSSGQA-----------PENTLASLHLAGQQGIKWVEIDVXLSG 49 Query: 102 DGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFE 161 DG PVIFHD+++ +G+ + + LAE K D ++ Sbjct: 50 DGIPVIFHDDYLSRTTDGDGL---IYKTPLAEL------------------KQLDAGSWK 88 Query: 162 WKVEKDTPLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQG 220 + + + TL EA E + Q G N+ELK + L EEE A +LK + Q Sbjct: 89 GQEYQQETIPTLLEAIEVISQYGXGLNLELKPCEGL---EEETIAASVEVLKQHW--PQD 143 Query: 221 RPIMFSSF 228 P++FSSF Sbjct: 144 LPLLFSSF 151

PyMOL of 3qvq

>pdb|2PZ0|A Chain A, Crystal Structure Of Glycerophosphodiester Phosphodiesterase (Gdpd) From T. Tengcongensis Length = 252

Back alignment and structure

>pdb|1O1Z|A Chain A, Crystal Structure Of Glycerophosphodiester Phosphodiesterase (Gdpd) (Tm1621) From Thermotoga Maritima At 1.60 A Resolution Length = 234

Back alignment and structure

>pdb|3I10|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester Phosphodiesterase (Np_812074.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.35 A Resolution Length = 278

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		310
3l12_A		313	Putative glycerophosphoryl diester phosphodiester;	5e-29
2oog_A		287	Glycerophosphoryl diester phosphodiesterase; phosp	1e-26
2pz0_A		252	Glycerophosphoryl diester phosphodiesterase; glyce	1e-26
3no3_A		238	Glycerophosphodiester phosphodiesterase; structura	7e-26
2o55_A		258	Putative glycerophosphodiester phosphodiesterase;	1e-25
3qvq_A		252	Phosphodiesterase OLEI02445; structural genomics,	3e-25
3ks6_A		250	Glycerophosphoryl diester phosphodiesterase; struc	3e-25
2otd_A		247	Glycerophosphodiester phosphodiesterase; structura	4e-25
1zcc_A		248	Glycerophosphodiester phosphodiesterase; NYSGXRC,	2e-24
1o1z_A		234	GDPD, glycerophosphodiester phosphodiesterase; TM1	2e-23
3mz2_A		292	Glycerophosphoryl diester phosphodiesterase; struc	3e-23
3ch0_A		272	Glycerophosphodiester phosphodiesterase; YP_677622	5e-23
1ydy_A		356	Glycerophosphoryl diester phosphodiesterase; struc	3e-22
1vd6_A		224	Glycerophosphoryl diester phosphodiesterase; glyce	5e-22
3i10_A		278	Putative glycerophosphoryl diester phosphodiester;	9e-21
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3rlg_A		302	Sphingomyelin phosphodiesterase D lisictox-alphai;	2e-04

>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} Length = 313	Back alignment and structure

 Score =  112 bits (281), Expect = 5e-29
 Identities = 52/274 (18%), Positives = 92/274 (33%), Gaps = 41/274 (14%)

Query: 49  PKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIF 108
               V+GHRG+   M            ENT+  F       +  +EFDV +T DG PV+ 
Sbjct: 16  SVVRVIGHRGARGVMP-----------ENTLEGFAFTLAAGVRALEFDVVMTADGVPVVT 64

Query: 109 HDNFI----FTKDEGEII---EKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFE 161
           H++ +        +G  +   E++V ++T AE  +        +VG    R     R  +
Sbjct: 65  HNHHLANAMTRDGQGHWLTGAERQVAEMTYAEIRAL-------DVGGLDGRTVYGRRFPD 117

Query: 162 WKVEKDTPLCTLQEAFEKV----DQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEH 217
                   +  L E  +      DQ+    +ELK D  L++        + A+L  V  +
Sbjct: 118 QAFLTGIHVPRLGELLDLCAGYGDQAPYLLLELKSDPALMHDHAARAEMVAAVLADVRRY 177

Query: 218 AQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSS----------LDEA 267
                 +  SF        R+     P  +L+            S+           +  
Sbjct: 178 RMEPRTVMHSFDWALLGECRRQAPDLPTSYLSQLPENADDPGEDSAKPVGPDYDRMTESL 237

Query: 268 IKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKL 301
            +   + G Q        +   P  + +  +  L
Sbjct: 238 PQAVASAGGQLWCPYFLDV--TPELVAEAHDLGL 269

PyMOL of 3l12

>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Length = 287	Back alignment and structure

>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} Length = 252	Back alignment and structure

>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} Length = 238	Back alignment and structure

>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} Length = 258	Back alignment and structure

>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} Length = 252	Back alignment and structure

>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* Length = 250	Back alignment and structure

>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} Length = 247	Back alignment and structure

>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 Length = 248	Back alignment and structure

>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 Length = 234	Back alignment and structure

>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} Length = 292	Back alignment and structure

>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} Length = 272	Back alignment and structure

>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A Length = 356	Back alignment and structure

>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A Length = 224	Back alignment and structure

>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} Length = 278	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A* Length = 302	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		310
2pz0_A		252	Glycerophosphoryl diester phosphodiesterase; glyce	100.0
3qvq_A		252	Phosphodiesterase OLEI02445; structural genomics,	100.0
2otd_A		247	Glycerophosphodiester phosphodiesterase; structura	100.0
3ks6_A		250	Glycerophosphoryl diester phosphodiesterase; struc	100.0
2oog_A		287	Glycerophosphoryl diester phosphodiesterase; phosp	100.0
2o55_A		258	Putative glycerophosphodiester phosphodiesterase;	100.0
3l12_A		313	Putative glycerophosphoryl diester phosphodiester;	100.0
3ch0_A		272	Glycerophosphodiester phosphodiesterase; YP_677622	100.0
1zcc_A		248	Glycerophosphodiester phosphodiesterase; NYSGXRC,	100.0
1o1z_A		234	GDPD, glycerophosphodiester phosphodiesterase; TM1	100.0
3no3_A		238	Glycerophosphodiester phosphodiesterase; structura	100.0
1vd6_A		224	Glycerophosphoryl diester phosphodiesterase; glyce	100.0
1ydy_A		356	Glycerophosphoryl diester phosphodiesterase; struc	100.0
3mz2_A		292	Glycerophosphoryl diester phosphodiesterase; struc	100.0
3i10_A		278	Putative glycerophosphoryl diester phosphodiester;	100.0
1xx1_A		285	Smase I, sphingomyelinase I; structure, quick cryo	99.97
3rlg_A		302	Sphingomyelin phosphodiesterase D lisictox-alphai;	99.66
1djx_A		624	PLC-D1, phosphoinositide-specific phospholipase C,	95.63
2zkm_X		799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	95.22
3qr0_A		816	Phospholipase C-beta (PLC-beta); PH domain, EF han	94.75
3ohm_B		885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	93.75
3h4x_A		339	Phosphatidylinositol-specific phospholipase C1; PI	91.8
3inp_A		246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	85.09
3nav_A		271	Tryptophan synthase alpha chain; alpha subunit, st	80.28

>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}	Back alignment and structure

Probab=100.00  E-value=3.5e-48  Score=346.48  Aligned_cols=211  Identities=26%  Similarity=0.282  Sum_probs=183.2

Q ss_pred             CcceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccc
Q 021627           49 PKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTD  128 (310)
Q Consensus        49 ~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~  128 (310)
                      -+|.+|||||+++           .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|+|+   +.|.+
T Consensus        10 ~~p~iiaHRG~~~-----------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~Rtt~~~---g~v~~   75 (252)
T 2pz0_A           10 MKTLVIAHRGDSK-----------NVPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDETVDRTTNGE---GFVKD   75 (252)
T ss_dssp             -CCEEEEETTTTT-----------TSCTTSHHHHHHHHHHTCSEEEEEEEECTTCCEEECSSSBSTTTSSCC---SBGGG
T ss_pred             CCceEEEcCCCCC-----------CCCcchHHHHHHHHHcCCCEEEEEEEEecCCeEEEEcCCcccccCCCC---cchhh
Confidence            4799999999997           799999999999999999999999999999999999999999999998   89999


Q ss_pred             cCHHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCC-cceEEEEeccCCcccccHHHHHHHH
Q 021627          129 ITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHAL  207 (310)
Q Consensus       129 lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~-~~~l~IEiK~~~~~~~~~~~~~~~v  207 (310)
                      +|++||++++    .|.++.+.              +.+++||||+|+|+.++. ++.++||||.+... +.     .++
T Consensus        76 ~t~~eL~~l~----~~~~~~~~--------------~~~~~iPtL~evL~~~~~~~~~l~iEiK~~~~~-~~-----~~~  131 (252)
T 2pz0_A           76 FTLEEIKKLD----AGIKFGEK--------------FAGERIPTLYEVFELIGDKDFLVNIEIKSGIVL-YP-----GIE  131 (252)
T ss_dssp             SCHHHHTTSC----SSTTTCGG--------------GTTCCCCBHHHHHHHHTTSCCEEEEEECCSSCC-CT-----THH
T ss_pred             CcHHHHhhcC----CCCCCCCC--------------CCCCcCCCHHHHHHHhhhcCCeEEEEeCCCCcc-cH-----HHH
Confidence            9999999984    34443321              357899999999999974 89999999986431 11     478


Q ss_pred             HHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccc
Q 021627          208 EAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF  287 (310)
Q Consensus       208 ~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~  287 (310)
                      +.++++++++++.++++|+||+++.|+.+++..|++++++++.....           ....+++..+++++++++..+ 
T Consensus       132 ~~v~~~l~~~~~~~~vii~SF~~~~l~~~~~~~p~~~~~~l~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~-  199 (252)
T 2pz0_A          132 EKLIKAIKEYNFEERVIISSFNHYSLRDVKKMAPHLKIGLLYQCGLV-----------EPWHMALRMEAYSLHPFYFNI-  199 (252)
T ss_dssp             HHHHHHHHHTTCTTTEEEEESBHHHHHHHHHHCTTSEEEEEECSBCS-----------STHHHHHHTTCSEEEEBGGGC-
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHCCCCCEEEEecCccc-----------cHHHHHHHcCCeEEecchhcC-
Confidence            88999999999999999999999999999999999999999864311           112466788999999998866 


Q ss_pred             cChHHHHHHHHhCCEEEeecCCC
Q 021627          288 KNPGAIKKIKEAKLCLVSYGELK  310 (310)
Q Consensus       288 ~~~~lv~~~~~~Gl~v~vwTv~n  310 (310)
                       ++++|+.+|++|+.|++||+++
T Consensus       200 -~~~~v~~~~~~G~~v~~wTvn~  221 (252)
T 2pz0_A          200 -IPELVEGCKKNGVKLFPWTVDR  221 (252)
T ss_dssp             -CHHHHHHHHHTTCEECCBCCCS
T ss_pred             -CHHHHHHHHHCCCEEEEECCCC
Confidence             9999999999999999999975

PyMOL of 2pz0

>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}	Back alignment and structure

>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}	Back alignment and structure

>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*	Back alignment and structure

>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A	Back alignment and structure

>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}	Back alignment and structure

>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}	Back alignment and structure

>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3	Back alignment and structure

>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3	Back alignment and structure

>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0	Back alignment and structure

>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A	Back alignment and structure

>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A	Back alignment and structure

>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}	Back alignment and structure

>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*	Back alignment and structure

>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A*	Back alignment and structure

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A	Back alignment and structure

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B	Back alignment and structure

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A	Back alignment and structure

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}	Back alignment and structure

>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A	Back alignment and structure

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}	Back alignment and structure

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		310
d1ydya1		328	c.1.18.3 (A:29-356) Glycerophosphodiester phosphod	7e-18
d1zcca1		240	c.1.18.3 (A:1-240) Glycerophosphodiester phosphodi	1e-12
d1vd6a1		217	c.1.18.3 (A:8-224) Putative glycerophosphodiester	3e-11
d1o1za_		226	c.1.18.3 (A:) Hypothetical protein TM1621 {Thermot	1e-10

>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Glycerophosphoryl diester phosphodiesterase
domain: Glycerophosphodiester phosphodiesterase GlpQ
species: Escherichia coli [TaxId: 562]

 Score = 80.5 bits (197), Expect = 7e-18
 Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 26/204 (12%)

Query: 50  KFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFH 109
           + +V+ HRG+   +            E+T+ +   A     D++E D+ +T+D   V+ H
Sbjct: 2   EKIVIAHRGASGYLP-----------EHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLH 50

Query: 110 DNFI---------FTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIF 160
           D+++         F     +       D TL E  S        ++      +T  GR  
Sbjct: 51  DHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGF-DIENGKKVQTYPGRFP 109

Query: 161 EWKVEKDTP-----LCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVF 215
             K +         +  +Q       +++G   E+K         +++      +LK   
Sbjct: 110 MGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYG 169

Query: 216 EHAQGRPIMFSSFQPDAALLIRKL 239
              +   +    F  D    I+  
Sbjct: 170 YTGKDDKVYLQCFDADELKRIKNE 193

PyMOL of d1ydya1

>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} Length = 240	Back information, alignment and structure

>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} Length = 217	Back information, alignment and structure

>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} Length = 226	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		310
d1zcca1		240	Glycerophosphodiester phosphodiesterase UgpQ {Agro	100.0
d1o1za_		226	Hypothetical protein TM1621 {Thermotoga maritima [	100.0
d1vd6a1		217	Putative glycerophosphodiester phosphodiesterase T	100.0
d1ydya1		328	Glycerophosphodiester phosphodiesterase GlpQ {Esch	100.0
d2zkmx4		349	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	96.69
d1qasa3		327	Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n	96.53
d2j9ga2		114	Biotin carboxylase (BC), N-terminal domain {Escher	85.48
d1ulza2		114	Biotin carboxylase (BC), N-terminal domain {Aquife	81.17

>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Glycerophosphoryl diester phosphodiesterase
domain: Glycerophosphodiester phosphodiesterase UgpQ
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=5.7e-45  Score=320.85  Aligned_cols=202  Identities=20%  Similarity=0.239  Sum_probs=166.6

Q ss_pred             ceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccC
Q 021627           51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDIT  130 (310)
Q Consensus        51 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt  130 (310)
                      .+||||||+++           .+||||++||+.|++.|+|+||+|||+||||++||+||.++.|+++++   +.|.++|
T Consensus         2 t~iiaHRG~~~-----------~~pENT~~a~~~A~~~G~~~iE~Dv~~TkDg~~Vv~HD~~l~r~t~~~---~~v~~~t   67 (240)
T d1zcca1           2 TKIVSHRGANR-----------FAPENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTNGT---GPVGHML   67 (240)
T ss_dssp             CEEEETTTTTT-----------TSCSSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSSBTTTTSSCC---SBSTTSC
T ss_pred             CEEEECCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEEEecCCCEEEecccccccccccc---ccHHHhh
Confidence            36999999987           799999999999999999999999999999999999999999999998   9999999


Q ss_pred             HHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHH
Q 021627          131 LAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAI  210 (310)
Q Consensus       131 ~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~v  210 (310)
                      |+||++++    .|.++..              ...+++||||+|+|+.++.++.++||+|.+.            .+.+
T Consensus        68 ~~el~~l~----~~~~~~~--------------~~~~~~IptL~evl~~~~~~~~l~iEiK~~~------------~~~v  117 (240)
T d1zcca1          68 SSEIDTLD----AGGWFDD--------------RFKGAIVPRLDAYLEHLRGRAGVYIELKYCD------------PAKV  117 (240)
T ss_dssp             HHHHTTSC----SSTTTCG--------------GGTTCCCCBHHHHHHHHTTTCEEEEEEEESC------------HHHH
T ss_pred             HHHHHHhh----ccCcCcc--------------ccCCCcCChHHHhhhcccccceeEEEEccCc------------chhh
Confidence            99999984    3433222              1356899999999999998899999999864            2356


Q ss_pred             HHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEe-cccccccC
Q 021627          211 LKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVS-EVRAIFKN  289 (310)
Q Consensus       211 l~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~-~~~~l~~~  289 (310)
                      .++++++++.++++|+||+++.++.+++..|+++++++++.....       ..    ..+ ......+.. +..  +.+
T Consensus       118 ~~l~~~~~~~~~v~~~Sf~~~~l~~~~~~~P~~~~~~~~~~~~~~-------~~----~~~-~~~~~~~~~~~~~--~~~  183 (240)
T d1zcca1         118 AALVRHLGMVRDTFYFSFSEEMRQGLQSIAPEFRRMMTLDIAKSP-------SL----VGA-VHHASIIEITPAQ--MRR  183 (240)
T ss_dssp             HHHHHHHTCSTTEEEECSCHHHHHHHHHHCTTSEEEEEHHHHSST-------HH----HHH-TTCCSEEEECHHH--HHS
T ss_pred             hHHHHHHHhhcccccccccHHHHHHHHHhhhccceEEeecccccc-------hh----HHH-Hhcccccccchhh--hCC
Confidence            777888899999999999999999999999999999987532110       11    111 222333333 333  348


Q ss_pred             hHHHHHHHHhCCEEEeecCCC
Q 021627          290 PGAIKKIKEAKLCLVSYGELK  310 (310)
Q Consensus       290 ~~lv~~~~~~Gl~v~vwTv~n  310 (310)
                      +++|+.+|++|+.|++||++|
T Consensus       184 ~~~v~~~~~~Gl~v~~wTvnd  204 (240)
T d1zcca1         184 PGIIEASRKAGLEIMVYYGGD  204 (240)
T ss_dssp             HHHHHHHHHHTCEEEEECCCC
T ss_pred             HHHHHHHHHCCCEEEEEccCC
Confidence            999999999999999999975

PyMOL of d1zcca1

>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure