Citrus Sinensis ID: 021648

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
Secondary Structure (PSIPRED)
cEEccEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEcccccccEEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEEccEEEEEEccccEEEEEEccccEEEEEcccccccccEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccccEEEEEcccccEEEEcccccEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEcccccEEEEEccccEEEEEEccccccccEEEEEcccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccEEccc
Coil and Loop (DISEMBL)
mevgmsfrdyngrissmdfhksssylvtasddesirlYDVTAATCLKTinskkygvdlvcftshpttviysskngwdESLRLLSLHDNKYLRYFKGHHDRVVSLslcsskdcfisgsldrtVLLWDQRAEKCQGLLRvqgrpaaayddqGLVFAVAFGGYIrmfdarkyekgpfdifsvggdisdanvvkfsndGRLMLLTTMEGHIHVLDSFRgtllstynvkpvsrnstleasfspegmfvisgsgdgsvYAWSVRSGKEVaswmsfdteppvikwtpgslmfvtgsselsfwipdlsklgayvgrk
Flexible Loop (DISEMBL)
MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTviysskngwDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSselsfwipdlsklgayvgrk
Low Complexity Region (SEG)
MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
Disordered region (IsUnstruct)
************************YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK*****************************AWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYV***
Disordered Region (DISOPRED)
MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA*****
Disordered Region (DISEMBL)
MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
Disordered Region (DISPRO)
MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
Q58E77	313	WD repeat-containing prot	N/A	no	0.961	0.948	0.415	1e-66
Q6GL39	313	WD repeat-containing prot	yes	no	0.961	0.948	0.405	1e-65
Q5ZMV7	313	WD repeat-containing prot	yes	no	0.961	0.948	0.415	1e-65
Q6NV31	313	WD repeat-containing prot	yes	no	0.961	0.948	0.408	5e-65
Q8BFQ4	313	WD repeat-containing prot	yes	no	0.961	0.948	0.408	9e-65
Q6UXN9	313	WD repeat-containing prot	yes	no	0.961	0.948	0.408	9e-65
Q640J6	313	WD repeat-containing prot	N/A	no	0.961	0.948	0.401	2e-64
Q9UT39	341	Uncharacterized WD repeat	yes	no	0.961	0.870	0.298	5e-33
P36104	329	COMPASS component SWD2 OS	yes	no	0.922	0.866	0.313	5e-32
O60137	357	Set1 complex component sw	no	no	0.822	0.711	0.324	6e-32

>sp|Q58E77|WD82B_XENLA WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-b PE=2 SV=1

 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/301 (41%), Positives = 193/301 (64%), Gaps = 4/301 (1%)

Query: 2   EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF 61
            V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ SKKYGVDL+ +
Sbjct: 12  RVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRY 71

Query: 62  TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT 121
           T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVVSLS+    D FISGSLD+T
Sbjct: 72  THAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVSLSMSPVDDTFISGSLDKT 130

Query: 122 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKYEKGPFDIFSVG 180
           + LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R ++KGPF  F + 
Sbjct: 131 IRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGINSEMVKLYDLRSFDKGPFATFKMQ 190

Query: 181 GD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239
            D   +   +KFSNDG+L+LL+T  G + ++D+F+G ++ T+     S+  TLEASF+P+
Sbjct: 191 YDRTCEWTALKFSNDGKLILLSTNGGFLRLVDAFKGAVMHTFGGYNNSKAVTLEASFTPD 250

Query: 240 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPD 298
             F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P 
Sbjct: 251 SQFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPT 310

Query: 299 L 299
           +
Sbjct: 311 I 311

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.
Xenopus laevis (taxid: 8355)

>sp|Q6GL39|WDR82_XENTR WD repeat-containing protein 82 OS=Xenopus tropicalis GN=wdr82 PE=2 SV=1

 Score =  250 bits (638), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 122/301 (40%), Positives = 193/301 (64%), Gaps = 4/301 (1%)

Query: 2   EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF 61
            V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ SKKYGVDL+ +
Sbjct: 12  RVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRY 71

Query: 62  TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT 121
           T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    D FISGSLD+T
Sbjct: 72  THAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKT 130

Query: 122 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKYEKGPFDIFSVG 180
           + LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R ++KGPF  F + 
Sbjct: 131 IRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQ 190

Query: 181 GD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239
            D   +   +KFSNDG+L+L++T  G + ++D+F+G ++ T+     S+  TLEA+F+P+
Sbjct: 191 YDRTCEWTALKFSNDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSKAVTLEATFTPD 250

Query: 240 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPD 298
             F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P 
Sbjct: 251 SQFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFTSACSNMAFWLPT 310

Query: 299 L 299
           +
Sbjct: 311 I 311

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZMV7|WDR82_CHICK WD repeat-containing protein 82 OS=Gallus gallus GN=WDR82 PE=2 SV=1

 Score =  250 bits (638), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/301 (41%), Positives = 193/301 (64%), Gaps = 4/301 (1%)

Query: 2   EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF 61
            V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ SKKYGVDL+ +
Sbjct: 12  RVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRY 71

Query: 62  TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT 121
           T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    D FISGSLD+T
Sbjct: 72  THAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHTKRVVALSMSPVDDTFISGSLDKT 130

Query: 122 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKYEKGPFDIFSVG 180
           + LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R ++KGPF  F + 
Sbjct: 131 IRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQ 190

Query: 181 GD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239
            D   +   +KFSNDG+L+L++T  G I ++D+F+G +L T+     S+  TLEASF+P+
Sbjct: 191 YDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSKAVTLEASFTPD 250

Query: 240 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPD 298
             F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P 
Sbjct: 251 SQFIMIGSEDGKIHVWNGESGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPT 310

Query: 299 L 299
           +
Sbjct: 311 I 311

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Gallus gallus (taxid: 9031)

>sp|Q6NV31|WDR82_DANRE WD repeat-containing protein 82 OS=Danio rerio GN=wdr82 PE=2 SV=1

 Score =  248 bits (632), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 193/301 (64%), Gaps = 4/301 (1%)

Query: 2   EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF 61
            V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ SKKYGVDL+ +
Sbjct: 12  RVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRY 71

Query: 62  TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT 121
           T    TV+YSS N  D+++R LSLHDNKY+RYF GH+ RVV+LS+    D FISGSLD+T
Sbjct: 72  THAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVDDTFISGSLDKT 130

Query: 122 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKYEKGPFDIFSVG 180
           + LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R ++KGPF  F + 
Sbjct: 131 IRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKLQ 190

Query: 181 GD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239
            +   +   +KFSNDG+L+L++T  G + VLD+F+G +L ++     S+   LEASF+P+
Sbjct: 191 YERTCEWTGLKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSKGVILEASFTPD 250

Query: 240 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPD 298
             F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P 
Sbjct: 251 SQFIMIGSEDGKIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFASACSNMAFWLPT 310

Query: 299 L 299
           +
Sbjct: 311 I 311

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Danio rerio (taxid: 7955)

>sp|Q8BFQ4|WDR82_MOUSE WD repeat-containing protein 82 OS=Mus musculus GN=Wdr82 PE=1 SV=1

 Score =  247 bits (630), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 192/301 (63%), Gaps = 4/301 (1%)

Query: 2   EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF 61
            V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ SKKYGVDL+ +
Sbjct: 12  RVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRY 71

Query: 62  TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT 121
           T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    D FISGSLD+T
Sbjct: 72  THAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKT 130

Query: 122 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKYEKGPFDIFSVG 180
           + LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R ++KGPF  F + 
Sbjct: 131 IRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQ 190

Query: 181 GD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239
            D   +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+  TLEASF+P+
Sbjct: 191 YDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPD 250

Query: 240 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPD 298
             F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P 
Sbjct: 251 SQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPT 310

Query: 299 L 299
           +
Sbjct: 311 I 311

Regulatory component of the SET1 complex implicated in the tethering of this complex to transcriptional start sites of active genes. Facilitates histone H3 'Lys-4' methylation via recruitment of the SETD1A or SETD1B to the 'Ser-5' phosphorylated C-terminal domain (CTD) of RNA polymerase II large subunit (POLR2A). Component of PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase. Possible role in telomere length maintenance and in mRNA processing.

Mus musculus (taxid: 10090)

>sp|Q6UXN9|WDR82_HUMAN WD repeat-containing protein 82 OS=Homo sapiens GN=WDR82 PE=1 SV=1

 Score =  247 bits (630), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 192/301 (63%), Gaps = 4/301 (1%)

Query: 2   EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF 61
            V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ SKKYGVDL+ +
Sbjct: 12  RVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRY 71

Query: 62  TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT 121
           T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    D FISGSLD+T
Sbjct: 72  THAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKT 130

Query: 122 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKYEKGPFDIFSVG 180
           + LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R ++KGPF  F + 
Sbjct: 131 IRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQ 190

Query: 181 GD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239
            D   +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+  TLEASF+P+
Sbjct: 191 YDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPD 250

Query: 240 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPD 298
             F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P 
Sbjct: 251 SQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPT 310

Query: 299 L 299
           +
Sbjct: 311 I 311

Regulatory component of the SET1 complex implicated in the tethering of this complex to transcriptional start sites of active genes. Facilitates histone H3 'Lys-4' methylation via recruitment of the SETD1A or SETD1B to the 'Ser-5' phosphorylated C-terminal domain (CTD) of RNA polymerase II large subunit (POLR2A). Component of PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase.

Homo sapiens (taxid: 9606)

>sp|Q640J6|WD82A_XENLA WD repeat-containing protein 82-A OS=Xenopus laevis GN=wdr82-a PE=2 SV=1

 Score =  246 bits (627), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/301 (40%), Positives = 191/301 (63%), Gaps = 4/301 (1%)

Query: 2   EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF 61
            V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ SKKYGVDL+ +
Sbjct: 12  RVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRY 71

Query: 62  TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT 121
           T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    D FIS SLD+T
Sbjct: 72  THAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISASLDKT 130

Query: 122 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKYEKGPFDIFSVG 180
           + LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R ++KGPF  F + 
Sbjct: 131 IRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQ 190

Query: 181 GD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239
            D   +   +KFS DG+L+L++T  G + ++D+F+G ++ T+     S+  TLEASF+P+
Sbjct: 191 YDRTCEWTSLKFSQDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSKAVTLEASFTPD 250

Query: 240 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPD 298
             F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P 
Sbjct: 251 SQFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPT 310

Query: 299 L 299
           +
Sbjct: 311 I 311

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Xenopus laevis (taxid: 8355)

>sp|Q9UT39|YIQ4_SCHPO Uncharacterized WD repeat-containing protein C824.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC824.04 PE=4 SV=1

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 168/328 (51%), Gaps = 31/328 (9%)

Query: 1   MEVGMSFRDYN--GRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVD 57
           ++   SFRD +    I+S+D+  S  Y+  T S D+++++YD      + TI   + G++
Sbjct: 9   LKPAQSFRDNSLGSFINSIDYSDSGEYVATTCSADDTVQIYDALDPKQVHTITCFETGIE 68

Query: 58  LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 117
           +  FT H   ++ S+  G ++ ++ +S++DNK + YF GH D V S+ +   +D F+S +
Sbjct: 69  VARFTHHDHNLLLSTTKG-NKDIQYVSIYDNKRISYFSGHTDIVSSIEVSPIEDQFVSTA 127

Query: 118 LDRTVLLWD-QRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF--DARKYEKGPF 174
            D+T+ LW   ++ +C G L +      AYD  GLVFAVA     R+F  D R Y   PF
Sbjct: 128 NDKTLKLWKMNQSSRCLGNLDLPSLGIPAYDPTGLVFAVACHSLSRIFLYDVRNYGSDPF 187

Query: 175 DIFSVGGD-----------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS---T 220
             F++              + +   ++FSNDG+ +LL+T     ++LD+F G +LS    
Sbjct: 188 STFTIDDSRYLSRFSFPPMMPEWKHMEFSNDGKCILLSTRANVHYILDAFSGDVLSRLED 247

Query: 221 YNVKPVSRN-STLEASFSPEGMFVISGSGDGSVYAWSVR-----SGKEVASWMSFDTE-- 272
           +   P S N      +F P+G FVI  + D ++  W++R      GK         ++  
Sbjct: 248 FQELPFSNNFHGGSTTFVPQGNFVIGSADDRTLNVWNLRHTFHHKGKTRPPEHRIVSQSI 307

Query: 273 --PPVIKWTPGSLMFVTGSSELSFWIPD 298
             P ++K+ P     +T  S+L FW+P+
Sbjct: 308 INPGLVKYNPRYDQLLTAGSQLVFWLPE 335

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P36104|SWD2_YEAST COMPASS component SWD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWD2 PE=1 SV=1

 Score =  138 bits (348), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 150/303 (49%), Gaps = 18/303 (5%)

Query: 12  GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS 71
           G ++S++F  +  +L+T+S +++++LY  T    L TI SKKYG     FT      IYS
Sbjct: 28  GPVTSLNFDDNGQFLLTSSSNDTMQLYSATNCKFLDTIASKKYGCHSAIFTHAQNECIYS 87

Query: 72  SK-NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 130
           S    +D  ++ L+L  N+YLRYF GH   V  L +    D F+S S D +V LWD +  
Sbjct: 88  STMKNFD--IKYLNLETNQYLRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKIS 145

Query: 131 KCQGLLRVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVG-GDISDAN 187
           K Q ++        AYD  GLVFA+       I +++ +K ++GPF I  +     S  N
Sbjct: 146 KPQVIIPSLVPNCIAYDPSGLVFALGNPENFEIGLYNLKKIQEGPFLIIKINDATFSQWN 205

Query: 188 VVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLE---ASFSPEGMFV 243
            ++FSN+G+ +L+ +  G   + D+F G  L      +       L+   A F+P+G FV
Sbjct: 206 KLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELIGTRAFPMREFLDSGSACFTPDGEFV 265

Query: 244 ISGSGDGSVYAWS--------VRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFW 295
           +    DG +  W+        V   +     +S +T P  I + P   MFVT    + F+
Sbjct: 266 LGTDYDGRIAIWNHSDSISNKVLRPQGFIPCVSHETCPRSIAFNPKYSMFVTADETVDFY 325

Query: 296 IPD 298
           + D
Sbjct: 326 VYD 328

Involved in mediating RNA polymerase II termination. Component of the cleavage and polyadenylation factor (CPF) complex, which plays a key role in polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. Component of the APT complex, which may be involved in polyadenylation-independent transcript 3'-end formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O60137|SWD2_SCHPO Set1 complex component swd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swd2 PE=3 SV=1

 Score =  138 bits (347), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 145/271 (53%), Gaps = 17/271 (6%)

Query: 8   RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT 67
           +++ G I+S+ F  S    + +  D++++LY+  +   +K++ SKKYG  L  FT H  +
Sbjct: 23  QNFVGEITSLSFDDSGELCLASCTDDTLQLYNCISGKFVKSLASKKYGAHLGRFTHHSNS 82

Query: 68  VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ 127
           +I++S    D ++R L +  N+YLRYF GH   V S+ +  + + F+S SLD T+ LWD 
Sbjct: 83  LIHASTKE-DNTVRYLDVVTNRYLRYFPGHKQTVTSIDVSPADETFLSASLDNTIRLWDL 141

Query: 128 RAEKCQGLLRVQGRPAAAYDDQGLVFA-VAFGGY------IRMFDARKYEKGPFDIFSVG 180
           R+  CQGLL V     AA+D  GL+FA V+   Y      I+ FDAR ++  P       
Sbjct: 142 RSPNCQGLLNVSSPVVAAFDATGLIFASVSERKYKISLYNIKSFDARPFQDIPLTFLPPH 201

Query: 181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL----STYNVKPVSRNSTLEAS- 235
             I++   V+FS DG+ +LLTT     +V+D++ G+ L    S  + K    N T  AS 
Sbjct: 202 VRIAN---VEFSTDGKYLLLTTGNDFHYVIDAYSGSELLRVPSKVSTKTQDGNLTYYASA 258

Query: 236 -FSPEGMFVISGSGDGSVYAWSVRSGKEVAS 265
             SP+  F+ +   +  +  + +   K+  +
Sbjct: 259 CMSPDSKFLFTSYDNEHLCMYQLPELKQTVN 289

The Set1 complex specifically methylates 'Lys-4' of histone H3.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
297735019	522	unnamed protein product [Vitis vinifera]	1.0	0.591	0.925	1e-171
147857700	328	hypothetical protein VITISV_020464 [Viti	1.0	0.942	0.925	1e-169
225431149	334	PREDICTED: WD repeat-containing protein	1.0	0.925	0.925	1e-169
449434162	332	PREDICTED: WD repeat-containing protein	1.0	0.930	0.912	1e-168
449491362	332	PREDICTED: WD repeat-containing protein	1.0	0.930	0.909	1e-167
255579793	332	COMPASS component SWD2, putative [Ricinu	1.0	0.930	0.896	1e-165
356554143	334	PREDICTED: WD repeat-containing protein	1.0	0.925	0.906	1e-164
356563997	334	PREDICTED: WD repeat-containing protein	1.0	0.925	0.903	1e-164
217074372	334	unknown [Medicago truncatula] gi|3885018	1.0	0.925	0.871	1e-158
224133718	307	predicted protein [Populus trichocarpa]	0.964	0.970	0.899	1e-158

>gi|297735019|emb|CBI17381.3| unnamed protein product [Vitis vinifera]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 286/309 (92%), Positives = 298/309 (96%)

Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
           MEVGM+FRDY+GRISSMDFH++SSYLVTASDDESIRLYDV   TCLKTINSKKYGVDLVC
Sbjct: 214 MEVGMAFRDYSGRISSMDFHRTSSYLVTASDDESIRLYDVATGTCLKTINSKKYGVDLVC 273

Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           FTS PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS K+CFISGSLDR
Sbjct: 274 FTSDPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSRKECFISGSLDR 333

Query: 121 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG 180
           TVLLWDQRAEKCQGLLRVQGRPA AYDDQGLVFA+AFGGY+R+FDARKY+KGPF+IFSVG
Sbjct: 334 TVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAIAFGGYVRLFDARKYDKGPFEIFSVG 393

Query: 181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
           GDISDANVVKFSNDGRLMLLTTM+GHIHVLDSFRGTLLSTYNVKPVS  STLEASFSPEG
Sbjct: 394 GDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTYNVKPVSSTSTLEASFSPEG 453

Query: 241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 300
           MFVISGSGDGSVYAWSVRSGKEVASWMS +TEPPVIKW PGSLMFVTGSSELSFWIPDLS
Sbjct: 454 MFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAPGSLMFVTGSSELSFWIPDLS 513

Query: 301 KLGAYVGRK 309
           KLGAY GRK
Sbjct: 514 KLGAYAGRK 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857700|emb|CAN80813.1| hypothetical protein VITISV_020464 [Vitis vinifera]

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 286/309 (92%), Positives = 298/309 (96%)

Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
           MEVGM+FRDY+GRISSMDFH++SSYLVTASDDESIRLYDV   TCLKTINSKKYGVDLVC
Sbjct: 20  MEVGMAFRDYSGRISSMDFHRTSSYLVTASDDESIRLYDVATGTCLKTINSKKYGVDLVC 79

Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           FTS PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS K+CFISGSLDR
Sbjct: 80  FTSDPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSRKECFISGSLDR 139

Query: 121 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG 180
           TVLLWDQRAEKCQGLLRVQGRPA AYDDQGLVFA+AFGGY+R+FDARKY+KGPF+IFSVG
Sbjct: 140 TVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAIAFGGYVRLFDARKYDKGPFEIFSVG 199

Query: 181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
           GDISDANVVKFSNDGRLMLLTTM+GHIHVLDSFRGTLLSTYNVKPVS  STLEASFSPEG
Sbjct: 200 GDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTYNVKPVSSTSTLEASFSPEG 259

Query: 241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 300
           MFVISGSGDGSVYAWSVRSGKEVASWMS +TEPPVIKW PGSLMFVTGSSELSFWIPDLS
Sbjct: 260 MFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAPGSLMFVTGSSELSFWIPDLS 319

Query: 301 KLGAYVGRK 309
           KLGAY GRK
Sbjct: 320 KLGAYAGRK 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431149|ref|XP_002268226.1| PREDICTED: WD repeat-containing protein 82-B-like [Vitis vinifera]

 Score =  598 bits (1542), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 286/309 (92%), Positives = 298/309 (96%)

Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
           MEVGM+FRDY+GRISSMDFH++SSYLVTASDDESIRLYDV   TCLKTINSKKYGVDLVC
Sbjct: 26  MEVGMAFRDYSGRISSMDFHRTSSYLVTASDDESIRLYDVATGTCLKTINSKKYGVDLVC 85

Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           FTS PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS K+CFISGSLDR
Sbjct: 86  FTSDPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSRKECFISGSLDR 145

Query: 121 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG 180
           TVLLWDQRAEKCQGLLRVQGRPA AYDDQGLVFA+AFGGY+R+FDARKY+KGPF+IFSVG
Sbjct: 146 TVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAIAFGGYVRLFDARKYDKGPFEIFSVG 205

Query: 181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
           GDISDANVVKFSNDGRLMLLTTM+GHIHVLDSFRGTLLSTYNVKPVS  STLEASFSPEG
Sbjct: 206 GDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTYNVKPVSSTSTLEASFSPEG 265

Query: 241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 300
           MFVISGSGDGSVYAWSVRSGKEVASWMS +TEPPVIKW PGSLMFVTGSSELSFWIPDLS
Sbjct: 266 MFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAPGSLMFVTGSSELSFWIPDLS 325

Query: 301 KLGAYVGRK 309
           KLGAY GRK
Sbjct: 326 KLGAYAGRK 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434162|ref|XP_004134865.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus]

 Score =  595 bits (1534), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/309 (91%), Positives = 298/309 (96%)

Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
           MEVGM+FRDYNGRISSMDFHK+SSYLVTASDDESIRLYDV +ATCLKTINSKKYGVDLVC
Sbjct: 24  MEVGMTFRDYNGRISSMDFHKTSSYLVTASDDESIRLYDVASATCLKTINSKKYGVDLVC 83

Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           FTSHPTTVIYSSKNGWDESLRLLSL+DNKYLRYF+GHHDRVVSLSLC+ K+CFISGSLDR
Sbjct: 84  FTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFRGHHDRVVSLSLCARKECFISGSLDR 143

Query: 121 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG 180
           TVLLWDQRAEKCQGLLRVQG+PA AYD+QG+VFA+AFGGYIRMFDARKYEKGPFDIFSVG
Sbjct: 144 TVLLWDQRAEKCQGLLRVQGKPATAYDEQGVVFAIAFGGYIRMFDARKYEKGPFDIFSVG 203

Query: 181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
            D+SDAN+VKFSNDGRLMLLTT +GHIHVLDSFRGTLLSTYNVKP+SRN TLEASFSPEG
Sbjct: 204 EDLSDANIVKFSNDGRLMLLTTSDGHIHVLDSFRGTLLSTYNVKPISRNLTLEASFSPEG 263

Query: 241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 300
           MFVISGSGDGSVYAWSVRSGKEVASWMS + EPPVIKW PGSLMF TGSSELSFWIPDLS
Sbjct: 264 MFVISGSGDGSVYAWSVRSGKEVASWMSTEMEPPVIKWAPGSLMFATGSSELSFWIPDLS 323

Query: 301 KLGAYVGRK 309
           KLGAYV RK
Sbjct: 324 KLGAYVDRK 332

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491362|ref|XP_004158872.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/309 (90%), Positives = 298/309 (96%)

Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
           MEVGM+FRDYNGRISSMDFH++SSYLVTASDDESIRLYDV +ATCLKTINSKKYGVDLVC
Sbjct: 24  MEVGMTFRDYNGRISSMDFHRTSSYLVTASDDESIRLYDVASATCLKTINSKKYGVDLVC 83

Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           FTSHPTTVIYSSKNGWDESLRLLSL+DNKYLRYF+GHHDRVVSLSLC+ K+CFISGSLDR
Sbjct: 84  FTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFRGHHDRVVSLSLCARKECFISGSLDR 143

Query: 121 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG 180
           TVLLWDQRAEKCQGLLRVQG+PA AYD+QG+VFA+AFGGYIRMFDARKYEKGPFDIFSVG
Sbjct: 144 TVLLWDQRAEKCQGLLRVQGKPATAYDEQGVVFAIAFGGYIRMFDARKYEKGPFDIFSVG 203

Query: 181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
            D+SDAN+VKFSNDGRLMLLTT +GHIHVLDSFRGTLLSTYNVKP+SRN TLEASFSPEG
Sbjct: 204 EDLSDANIVKFSNDGRLMLLTTSDGHIHVLDSFRGTLLSTYNVKPISRNLTLEASFSPEG 263

Query: 241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 300
           MFVISGSGDGSVYAWSVRSGKEVASWMS + EPPVIKW PGSLMF TGSSELSFWIPDLS
Sbjct: 264 MFVISGSGDGSVYAWSVRSGKEVASWMSTEMEPPVIKWAPGSLMFATGSSELSFWIPDLS 323

Query: 301 KLGAYVGRK 309
           KLGAYV RK
Sbjct: 324 KLGAYVDRK 332

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579793|ref|XP_002530734.1| COMPASS component SWD2, putative [Ricinus communis] gi|223529698|gb|EEF31640.1| COMPASS component SWD2, putative [Ricinus communis]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/309 (89%), Positives = 297/309 (96%)

Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
           ME+GM FRDYNGRISSMDFHK+SSYLVTASDDESIRLYDV++A CLKTINSKKYGVDLVC
Sbjct: 24  MEIGMVFRDYNGRISSMDFHKTSSYLVTASDDESIRLYDVSSAACLKTINSKKYGVDLVC 83

Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           FTSHPTTVIYSSKNGWDESLRLLSL+DNKYLRYFKGHHDRVVSLSLC+ K+CFISGSLDR
Sbjct: 84  FTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFKGHHDRVVSLSLCARKECFISGSLDR 143

Query: 121 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG 180
           TVLLWDQRAEKCQGLL VQGRPA AYDDQGLVF +AFGG+IRMFD+RKYEKGPF+IFSVG
Sbjct: 144 TVLLWDQRAEKCQGLLHVQGRPATAYDDQGLVFTIAFGGFIRMFDSRKYEKGPFEIFSVG 203

Query: 181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
           GD+SDA+VVKFSNDGRLMLLTT++GHIHVLDSFRGTLLSTYNVKPV  NSTLEASFSPEG
Sbjct: 204 GDVSDAHVVKFSNDGRLMLLTTVDGHIHVLDSFRGTLLSTYNVKPVLTNSTLEASFSPEG 263

Query: 241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 300
           MFV+SGSGDGSV+AWSVRSGKEVASWM+++TEP VIKW PGSLMF TGSSELSFWIPDLS
Sbjct: 264 MFVVSGSGDGSVHAWSVRSGKEVASWMTYETEPHVIKWAPGSLMFATGSSELSFWIPDLS 323

Query: 301 KLGAYVGRK 309
           KL AYVGRK
Sbjct: 324 KLAAYVGRK 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554143|ref|XP_003545408.1| PREDICTED: WD repeat-containing protein 82-B-like [Glycine max]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 282/311 (90%), Positives = 296/311 (95%), Gaps = 2/311 (0%)

Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
           MEVGMSF+DYNGRISS+DFH++S+YLVTASDDESIRLYDVT+ TCLKTINSKKYGVDLVC
Sbjct: 24  MEVGMSFKDYNGRISSLDFHRASNYLVTASDDESIRLYDVTSGTCLKTINSKKYGVDLVC 83

Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS KDCFISGSLDR
Sbjct: 84  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSRKDCFISGSLDR 143

Query: 121 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG 180
           TVLLWDQRAEKCQGLL VQGRPA +YDDQGLVFA+AFGGYIRMFDARKYEKGPF+IFSVG
Sbjct: 144 TVLLWDQRAEKCQGLLHVQGRPAISYDDQGLVFAIAFGGYIRMFDARKYEKGPFEIFSVG 203

Query: 181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
           GDISDANVVKFSNDGRLMLLTT +GHIHVLDSFRGTLLSTY V P+S NSTLEASFSPEG
Sbjct: 204 GDISDANVVKFSNDGRLMLLTTADGHIHVLDSFRGTLLSTYIVTPISCNSTLEASFSPEG 263

Query: 241 MFVISGSGDGSVYAWSVRSGKEVASWMSF--DTEPPVIKWTPGSLMFVTGSSELSFWIPD 298
           MFVISGSGDGS+YAWSVRSGKEVASW S   DT PPVIKW PGSLMF TGSSELSFW+PD
Sbjct: 264 MFVISGSGDGSIYAWSVRSGKEVASWRSATSDTGPPVIKWAPGSLMFATGSSELSFWVPD 323

Query: 299 LSKLGAYVGRK 309
           LSKLG+YVGRK
Sbjct: 324 LSKLGSYVGRK 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563997|ref|XP_003550243.1| PREDICTED: WD repeat-containing protein 82-B-like [Glycine max]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 281/311 (90%), Positives = 295/311 (94%), Gaps = 2/311 (0%)

Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
           MEVGMSF+DYNGRISS+DFH++SSYLVTASDDESIRLYDVT  TCLKTINSKKYGVDLVC
Sbjct: 24  MEVGMSFKDYNGRISSLDFHRASSYLVTASDDESIRLYDVTGGTCLKTINSKKYGVDLVC 83

Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS KDCFISGSLDR
Sbjct: 84  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSRKDCFISGSLDR 143

Query: 121 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG 180
           TVLLWDQRAEKCQGLL VQGRPA +YDD GLVFA+AFGGYIRMFDARKYEKGPF+IFSVG
Sbjct: 144 TVLLWDQRAEKCQGLLHVQGRPAISYDDPGLVFAIAFGGYIRMFDARKYEKGPFEIFSVG 203

Query: 181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
           GDISDANVVKFSNDGRLMLLTT +GHIHVLD+FRGTLLSTYNV PVS NSTLEASFSPEG
Sbjct: 204 GDISDANVVKFSNDGRLMLLTTADGHIHVLDTFRGTLLSTYNVTPVSCNSTLEASFSPEG 263

Query: 241 MFVISGSGDGSVYAWSVRSGKEVASWMSF--DTEPPVIKWTPGSLMFVTGSSELSFWIPD 298
           MF+ISGSG+GS+YAWSVRSGKEVASW S   DT PPVIKW PGSLMF TGSSELSFW+PD
Sbjct: 264 MFIISGSGEGSIYAWSVRSGKEVASWRSATSDTGPPVIKWAPGSLMFATGSSELSFWVPD 323

Query: 299 LSKLGAYVGRK 309
           LSKLG+YVGRK
Sbjct: 324 LSKLGSYVGRK 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074372|gb|ACJ85546.1| unknown [Medicago truncatula] gi|388501886|gb|AFK39009.1| unknown [Medicago truncatula]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 271/311 (87%), Positives = 289/311 (92%), Gaps = 2/311 (0%)

Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
           MEVGMSF+DYNGRISSMDFH++SSYLVTASDDESIRLYDV A T LKTINSKKYGVDLVC
Sbjct: 24  MEVGMSFKDYNGRISSMDFHRASSYLVTASDDESIRLYDVAAGTSLKTINSKKYGVDLVC 83

Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLC  KDCFISGSLDR
Sbjct: 84  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCPRKDCFISGSLDR 143

Query: 121 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG 180
           TVLLWDQRAEKCQGLL VQGRPA +YDDQGLVFA+AFGGYIRMFDAR YEKGPF++FSVG
Sbjct: 144 TVLLWDQRAEKCQGLLHVQGRPAISYDDQGLVFAIAFGGYIRMFDARMYEKGPFELFSVG 203

Query: 181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
           GD+SDANVVKFSNDGRL+L+TT +GHIHVLDSFRGTLL  YNV PVS NSTLEASFSP+G
Sbjct: 204 GDVSDANVVKFSNDGRLLLVTTTDGHIHVLDSFRGTLLFAYNVTPVSCNSTLEASFSPDG 263

Query: 241 MFVISGSGDGSVYAWSVRSGKEVASWMSF--DTEPPVIKWTPGSLMFVTGSSELSFWIPD 298
           MFVIS SGDGS+YAWSVRSGKEVASW S   D  PPV+KW PGSLMF TGSSELSFW+PD
Sbjct: 264 MFVISSSGDGSIYAWSVRSGKEVASWRSATSDIGPPVVKWAPGSLMFATGSSELSFWVPD 323

Query: 299 LSKLGAYVGRK 309
           LSK+GA+VG+K
Sbjct: 324 LSKIGAFVGKK 334

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133718|ref|XP_002327663.1| predicted protein [Populus trichocarpa] gi|222836748|gb|EEE75141.1| predicted protein [Populus trichocarpa]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/298 (89%), Positives = 283/298 (94%)

Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
           ME GM FRDYNGRISSMDFHK+SSYLVTASDDESIRLYDV  A CLK INSKKYGVDLVC
Sbjct: 10  METGMVFRDYNGRISSMDFHKTSSYLVTASDDESIRLYDVAGAACLKAINSKKYGVDLVC 69

Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           FTS PTTV+YSSKNGWDESLRLLSL+DNKYLRYFKGHHDRVVSLSLCS K+CFISGSLDR
Sbjct: 70  FTSDPTTVLYSSKNGWDESLRLLSLNDNKYLRYFKGHHDRVVSLSLCSRKECFISGSLDR 129

Query: 121 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG 180
           TVLLWDQRAEKCQGLLRVQGRPAAAYDDQG+VFA+AFGGYIRMFD+RKYEKGPFDIFSVG
Sbjct: 130 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGIVFAIAFGGYIRMFDSRKYEKGPFDIFSVG 189

Query: 181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
           GD+SDAN VKFSNDGRLMLLTTM+GHIHVLDSFRGTLLSTYNVKPVS NSTLEASFSPEG
Sbjct: 190 GDVSDANAVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTYNVKPVSINSTLEASFSPEG 249

Query: 241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD 298
            FV+SGSGDG V+AWSVRSGKEVASW++++TEP VIKW PGSLMF TGSSELSFWIPD
Sbjct: 250 KFVVSGSGDGRVHAWSVRSGKEVASWVTYETEPHVIKWAPGSLMFATGSSELSFWIPD 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
TAIR|locus:2154996	331	AT5G66240 "AT5G66240" [Arabido	1.0	0.933	0.838	8.9e-141
TAIR|locus:2222612	330	AT5G14530 "AT5G14530" [Arabido	0.961	0.9	0.503	1.1e-80
DICTYBASE|DDB_G0278945	319	DDB_G0278945 "WD repeat-contai	0.977	0.946	0.478	5.1e-74
UNIPROTKB|Q5ZMV7	313	WDR82 "WD repeat-containing pr	0.957	0.945	0.416	5.4e-63
UNIPROTKB|E2RGF2	313	WDR82 "Uncharacterized protein	0.957	0.945	0.41	3.8e-62
UNIPROTKB|Q6UXN9	313	WDR82 "WD repeat-containing pr	0.957	0.945	0.41	3.8e-62
UNIPROTKB|F2Z5U3	313	WDR82 "Uncharacterized protein	0.957	0.945	0.41	3.8e-62
MGI|MGI:1924555	313	Wdr82 "WD repeat domain contai	0.957	0.945	0.41	3.8e-62
FB|FBgn0032030	317	Wdr82 [Drosophila melanogaster	0.951	0.927	0.413	7.9e-62
ZFIN|ZDB-GENE-030131-333	600	wdr82 "WD repeat domain contai	0.935	0.481	0.409	1.3e-59

TAIR|locus:2154996 AT5G66240 "AT5G66240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
 Identities = 259/309 (83%), Positives = 284/309 (91%)

Query:     1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
             ME G  FRDYN RISS+DFHK+S+ +VTASDD+SIRLYDV +ATCLKTINSKKYGVDLVC
Sbjct:    23 MEPGAVFRDYNCRISSIDFHKTSTCMVTASDDDSIRLYDVASATCLKTINSKKYGVDLVC 82

Query:    61 FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
             FTSHPTTVIYSS+NGWD+SLRLLSLHDNKYLRYFKGHHDRVVSLSLCS  +CFISGSLDR
Sbjct:    83 FTSHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVVSLSLCSGGECFISGSLDR 142

Query:   121 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG 180
             TVLLWDQR EKCQGLLRVQGRPAAAYDDQGL+FA+AFGGYIRMFDAR YEKGPF+IFSVG
Sbjct:   143 TVLLWDQRVEKCQGLLRVQGRPAAAYDDQGLIFAIAFGGYIRMFDARMYEKGPFEIFSVG 202

Query:   181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
             GD+S+ANVVKFSNDGRLMLLTTM+G IHVLDSFRGTLLST++VKPV+  STL+A+FSPEG
Sbjct:   203 GDLSEANVVKFSNDGRLMLLTTMDGFIHVLDSFRGTLLSTFSVKPVAGESTLDAAFSPEG 262

Query:   241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 300
             MFV+SGSGDGS +AW VRSGK+V SWM   +EPPVIKW PGS MFVTGSSEL+F IPDLS
Sbjct:   263 MFVVSGSGDGSTHAWGVRSGKQVHSWMGLGSEPPVIKWGPGSPMFVTGSSELAFVIPDLS 322

Query:   301 KLGAYVGRK 309
             KL AY  RK
Sbjct:   323 KLPAYAIRK 331

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2222612 AT5G14530 "AT5G14530" [Arabidopsis thaliana (taxid:3702)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 152/302 (50%), Positives = 216/302 (71%)

Query:     1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
             M +G  F D+ G+I S+ FH++   LVT+S+D+S+RL+D+  A  LK    KK+G D VC
Sbjct:    14 MAMGAVFSDFGGKIHSVGFHRTDDLLVTSSEDDSLRLFDIANAKQLKITYHKKHGTDRVC 73

Query:    61 FTSHPTTVIYSSKNGWD---ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 117
             FT HP+++I SS+   +   ESLR LS++DN+ LRYFKGH DRVVSL +    D F+SGS
Sbjct:    74 FTHHPSSLICSSRYNLESTGESLRYLSMYDNRILRYFKGHKDRVVSLCMSPINDSFMSGS 133

Query:   118 LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDI 176
             LDR+V LWD R   CQG+L ++GRPA AYD QGLVFA+A  GG +++FD+R Y+KGPFD 
Sbjct:   134 LDRSVRLWDLRVNACQGILHLRGRPAVAYDQQGLVFAIAMEGGAVKLFDSRCYDKGPFDT 193

Query:   177 FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 236
             F VGGD ++ N +KFSNDG+ MLLTT   +I+VLD++RG     ++++P S+ + +EA+F
Sbjct:   194 FLVGGDTAEVNDIKFSNDGKSMLLTTTNNNIYVLDAYRGEKKCGFSLEP-SQGTPIEATF 252

Query:   237 SPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWI 296
             +P+G +V+SGSGDG+++AW++ +  EVA W +       +KW P   MFV  S+ L+FWI
Sbjct:   253 TPDGKYVLSGSGDGTLHAWNIENPSEVARWENNIGVVSCLKWAPRRAMFVAASTVLTFWI 312

Query:   297 PD 298
             P+
Sbjct:   313 PN 314

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

DICTYBASE|DDB_G0278945 DDB_G0278945 "WD repeat-containing protein 82" [Dictyostelium discoideum (taxid:44689)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 146/305 (47%), Positives = 200/305 (65%)

Query:     1 MEVGMSFRDYNGR-ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLV 59
             M +G   +D N   I+SMDF+K  S L+TASDDESI LY++      KT+NSKKYGVDL+
Sbjct:    15 MGIGKLHKDDNSSVINSMDFNKDGSLLITASDDESIHLYNIDTGELQKTLNSKKYGVDLI 74

Query:    60 CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD 119
              FT +  ++I +SKN WDESLR LSLHDNKYL+YFKGH ++VVS+S+    D F+SGSLD
Sbjct:    75 KFTHNNNSIICASKNSWDESLRYLSLHDNKYLKYFKGHRNKVVSISMSPINDMFLSGSLD 134

Query:   120 RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG-GYIRMFDARKYEKGPFDIFS 178
              T+ +WD R   CQGLLR  GRPA ++D QG++FA A     I+++D R Y+KGPF  FS
Sbjct:   135 DTIRMWDLRTNVCQGLLRRNGRPAVSFDPQGIIFATAVSVNTIKLYDLRNYDKGPFSSFS 194

Query:   179 VGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 237
             +   I  +   +KF+ DG+ +LL+T    I ++DSF G +   Y        S +E+SFS
Sbjct:   195 IDHPIPVEWTSMKFTADGKYILLSTKTNIIFLIDSFTGEVKQRYTSFKNDNGSVIESSFS 254

Query:   238 PEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP 297
             P+  +V+SGS DG+V+ W   +G+EVA W    +    ++W P S+M  T  S L+FWIP
Sbjct:   255 PDAQYVLSGSEDGTVHIWKTLTGEEVAVWGGHSSTVGRVQWNPRSMMAATACSNLAFWIP 314

Query:   298 DLSKL 302
             + S L
Sbjct:   315 NDSVL 319

GO:0030587 "sorocarp development" evidence=IMP

UNIPROTKB|Q5ZMV7 WDR82 "WD repeat-containing protein 82" [Gallus gallus (taxid:9031)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 125/300 (41%), Positives = 194/300 (64%)

Query:     3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT 62
             V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ SKKYGVDL+ +T
Sbjct:    13 VAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYT 72

Query:    63 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTV 122
                 TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    D FISGSLD+T+
Sbjct:    73 HAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHTKRVVALSMSPVDDTFISGSLDKTI 131

Query:   123 LLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKYEKGPFDIFSVGG 181
              LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R ++KGPF  F +  
Sbjct:   132 RLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQY 191

Query:   182 DIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
             D + +   +KFSNDG+L+L++T  G I ++D+F+G +L T+     S+  TLEASF+P+ 
Sbjct:   192 DRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSKAVTLEASFTPDS 251

Query:   241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPDL 299
              F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P +
Sbjct:   252 QFIMIGSEDGKIHVWNGESGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTI 311

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2RGF2 WDR82 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 123/300 (41%), Positives = 193/300 (64%)

Query:     3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT 62
             V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ SKKYGVDL+ +T
Sbjct:    13 VAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYT 72

Query:    63 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTV 122
                 TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    D FISGSLD+T+
Sbjct:    73 HAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTI 131

Query:   123 LLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKYEKGPFDIFSVGG 181
              LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R ++KGPF  F +  
Sbjct:   132 RLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQY 191

Query:   182 DIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
             D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+  TLEASF+P+ 
Sbjct:   192 DRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDS 251

Query:   241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPDL 299
              F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P +
Sbjct:   252 QFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTI 311

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

UNIPROTKB|Q6UXN9 WDR82 "WD repeat-containing protein 82" [Homo sapiens (taxid:9606)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 123/300 (41%), Positives = 193/300 (64%)

Query:     3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT 62
             V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ SKKYGVDL+ +T
Sbjct:    13 VAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYT 72

Query:    63 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTV 122
                 TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    D FISGSLD+T+
Sbjct:    73 HAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTI 131

Query:   123 LLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKYEKGPFDIFSVGG 181
              LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R ++KGPF  F +  
Sbjct:   132 RLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQY 191

Query:   182 DIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
             D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+  TLEASF+P+ 
Sbjct:   192 DRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDS 251

Query:   241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPDL 299
              F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P +
Sbjct:   252 QFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTI 311

GO:0003682 "chromatin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0000785 "chromatin" evidence=IDA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

UNIPROTKB|F2Z5U3 WDR82 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 123/300 (41%), Positives = 193/300 (64%)

Query:     3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT 62
             V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ SKKYGVDL+ +T
Sbjct:    13 VAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYT 72

Query:    63 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTV 122
                 TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    D FISGSLD+T+
Sbjct:    73 HAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTI 131

Query:   123 LLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKYEKGPFDIFSVGG 181
              LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R ++KGPF  F +  
Sbjct:   132 RLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQY 191

Query:   182 DIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
             D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+  TLEASF+P+ 
Sbjct:   192 DRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDS 251

Query:   241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPDL 299
              F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P +
Sbjct:   252 QFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTI 311

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

MGI|MGI:1924555 Wdr82 "WD repeat domain containing 82" [Mus musculus (taxid:10090)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 123/300 (41%), Positives = 193/300 (64%)

Query:     3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT 62
             V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ SKKYGVDL+ +T
Sbjct:    13 VAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYT 72

Query:    63 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTV 122
                 TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    D FISGSLD+T+
Sbjct:    73 HAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTI 131

Query:   123 LLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKYEKGPFDIFSVGG 181
              LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R ++KGPF  F +  
Sbjct:   132 RLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQY 191

Query:   182 DIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
             D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+  TLEASF+P+ 
Sbjct:   192 DRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDS 251

Query:   241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPDL 299
              F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P +
Sbjct:   252 QFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTI 311

GO:0000785 "chromatin" evidence=ISO

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO;IMP

GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISO

FB|FBgn0032030 Wdr82 [Drosophila melanogaster (taxid:7227)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 124/300 (41%), Positives = 192/300 (64%)

Query:     2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF 61
             +V   FR+   +I+++DF  +  +L++ S+D+ I +YD    T  +T+NSKKYGVDL+ F
Sbjct:    14 KVAKIFRENTDKINAIDFAPNGEHLISCSEDDQIVIYDCEKGTQSRTVNSKKYGVDLIHF 73

Query:    62 TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT 121
             T    T I+SS    D+++R LSLHDNKYLRYF GH  +V+SL +   +D F+SGSLD+T
Sbjct:    74 THANNTAIHSSTKV-DDTIRYLSLHDNKYLRYFPGHTKKVISLCISPVEDTFLSGSLDKT 132

Query:   122 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGY-IRMFDARKYEKGPFDIFSVG 180
             + LWD R+  CQGL+ + GRP AAYD +GL+FA       I+++D R ++KGPF  F + 
Sbjct:   133 LRLWDLRSPNCQGLMHLSGRPIAAYDPEGLIFAAGVNSESIKLYDLRSFDKGPFVTFKLN 192

Query:   181 GDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239
              +   D   +KFS DG+ +L++T    I ++D+F GT L T+   P ++   +EASFSP+
Sbjct:   193 QEKECDWTGLKFSRDGKTILISTNGSVIRLVDAFHGTPLQTFTGYPNNKGIPIEASFSPD 252

Query:   240 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIP 297
               F+ SGS DG V+ W+  +G +V S ++ D   PV  +++ P  +M  +  + ++FW+P
Sbjct:   253 SQFIFSGSTDGRVHIWNADTGNKV-SVLNGDHPGPVQCVQFNPKYMMLASACTNMAFWLP 311

GO:0008352 "katanin complex" evidence=ISS

GO:0051013 "microtubule severing" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0080182 "histone H3-K4 trimethylation" evidence=IMP

GO:0035097 "histone methyltransferase complex" evidence=IDA

ZFIN|ZDB-GENE-030131-333 wdr82 "WD repeat domain containing 82" [Danio rerio (taxid:7955)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 120/293 (40%), Positives = 188/293 (64%)

Query:     3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT 62
             V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ SKKYGVDL+ +T
Sbjct:    13 VAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYT 72

Query:    63 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTV 122
                 TV+YSS N  D+++R LSLHDNKY+RYF GH+ RVV+LS+    D FISGSLD+T+
Sbjct:    73 HAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVDDTFISGSLDKTI 131

Query:   123 LLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKYEKGPFDIFSVGG 181
              LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R ++KGPF  F +  
Sbjct:   132 RLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKLQY 191

Query:   182 DIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240
             + + +   +KFSNDG+L+L++T  G + VLD+F+G +L ++     S+   LEASF+P+ 
Sbjct:   192 ERTCEWTGLKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSKGVILEASFTPDS 251

Query:   241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV-IKWTPGSLMFVTGSSEL 292
              F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S +
Sbjct:   252 QFIMIGSEDGKIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFASACSNM 304

GO:0003779 "actin binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZMV7	WDR82_CHICK	No assigned EC number	0.4152	0.9611	0.9488	yes	no
Q6GL39	WDR82_XENTR	No assigned EC number	0.4053	0.9611	0.9488	yes	no
Q6UXN9	WDR82_HUMAN	No assigned EC number	0.4086	0.9611	0.9488	yes	no
Q8BFQ4	WDR82_MOUSE	No assigned EC number	0.4086	0.9611	0.9488	yes	no
P36104	SWD2_YEAST	No assigned EC number	0.3135	0.9223	0.8662	yes	no
Q6NV31	WDR82_DANRE	No assigned EC number	0.4086	0.9611	0.9488	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036790001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (310 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014835001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (448 aa)			•						0.496
	GSVIVG00017915001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (459 aa)			•						0.493
	GSVIVG00038020001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (438 aa)			•						0.489
	GSVIVG00032589001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (331 aa)			•						0.489
	GSVIVG00027473001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (339 aa)			•						0.487
	GSVIVG00034167001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (405 aa)			•						0.485
	GSVIVG00014907001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (336 aa)			•						0.482
	GSVIVG00003115001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (352 aa)			•						0.480
	GSVIVG00026345001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (439 aa)			•						0.477
	GSVIVG00001955001	SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (312 aa)			•						0.476

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	309
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-09
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  114 bits (287), Expect = 7e-30
 Identities = 75/296 (25%), Positives = 129/296 (43%), Gaps = 19/296 (6%)

Query: 7   FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT 66
            + + G ++ + F      L T S D +I+++D+     L+T+      V  V  ++   
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD-G 63

Query: 67  TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 126
           T + S     D+++RL  L   + +R   GH   V S++         S S D+T+ +WD
Sbjct: 64  TYLASG--SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121

Query: 127 QRAEKCQGLLRVQGRP--AAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI 183
               KC   LR       + A+  D   V + +  G I+++D R          +  G  
Sbjct: 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR--TGKCVATLT--GHT 177

Query: 184 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV 243
            + N V FS DG  +L ++ +G I + D   G  L T        NS    +FSP+G  +
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS---VAFSPDGYLL 234

Query: 244 ISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPV--IKWTPGSLMFVTGSSELSFWI 296
            SGS DG++  W +R+G+ V +          V  + W+P      +GS++ +  I
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLSG---HTNSVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 98.2 bits (245), Expect = 8e-24
 Identities = 64/251 (25%), Positives = 98/251 (39%), Gaps = 49/251 (19%)

Query: 6   SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 65
           +   +   +SS+ F      L ++S D++I+++DV    CL T+      V+ V F+   
Sbjct: 88  TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147

Query: 66  TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW 125
           T V  SS    D +++L  L   K +    GH   V S++     +  +S S D T+ LW
Sbjct: 148 TFVASSS---QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Query: 126 DQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD 185
           D    KC G LR              V +VA                             
Sbjct: 205 DLSTGKCLGTLRGHENG---------VNSVA----------------------------- 226

Query: 186 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 245
                FS DG L+   + +G I V D   G  + T        NS    ++SP+G  + S
Sbjct: 227 -----FSPDGYLLASGSEDGTIRVWDLRTGECVQTL---SGHTNSVTSLAWSPDGKRLAS 278

Query: 246 GSGDGSVYAWS 256
           GS DG++  W 
Sbjct: 279 GSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 82.8 bits (203), Expect = 1e-17
 Identities = 79/298 (26%), Positives = 133/298 (44%), Gaps = 16/298 (5%)

Query: 4   GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV-TAATCLKTINSKKYG-VDLVCF 61
            +  R +   I+S+ F      L++ S D +I+L+D+      +K++       V  +  
Sbjct: 58  SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117

Query: 62  TSHPTTVIYSSKNGWDESLRLLSL-HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LD 119
           +S     I  + +  D +++L  L    K +R  +GH + V SL+         SGS LD
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD 177

Query: 120 RTVLLWDQRAEKCQGLLRVQGRP----AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD 175
            T+ LWD R  K    L     P    A + D   L+ + +  G IR++D    +     
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237

Query: 176 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 235
           +       SD+ V  FS DG L+   + +G I + D    +  S         +S L  +
Sbjct: 238 LSGH----SDSVVSSFSPDGSLLASGSSDGTIRLWDL--RSSSSLLRTLSGHSSSVLSVA 291

Query: 236 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSE 291
           FSP+G  + SGS DG+V  W + +GK ++S      E PV  + ++P   + V+G S+
Sbjct: 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 80.1 bits (196), Expect = 8e-17
 Identities = 73/308 (23%), Positives = 122/308 (39%), Gaps = 14/308 (4%)

Query: 5   MSFRDYNGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTS 63
            +   ++  ++S+ F      L + S  D +I+L+D+     L T+      V  + F  
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF-- 206

Query: 64  HPTTVIYSSKNGWDESLRLLSLHDNKYLR-YFKGHHDRVVSLSLCSSKDCFISGSLDRTV 122
            P   +  +    D ++RL  L   K LR    GH D VVS S         SGS D T+
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTI 265

Query: 123 LLWDQRAE-KCQGLLRVQGRP--AAAYDDQGLVFAVAFG-GYIRMFDARKYEKGPFDIFS 178
            LWD R+       L        + A+   G + A     G +R++D    +       +
Sbjct: 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL--LSSLT 323

Query: 179 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 238
           + G     + + FS DG L++    +     L   R              ++ L  SFSP
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR---TGKPLKTLEGHSNVLSVSFSP 380

Query: 239 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD 298
           +G  V SGS DG+V  W + +G  + +     +    + ++P      +GSS+ +  + D
Sbjct: 381 DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Query: 299 LSKLGAYV 306
           L      V
Sbjct: 441 LKTSLKSV 448

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.4 bits (176), Expect = 3e-14
 Identities = 65/271 (23%), Positives = 112/271 (41%), Gaps = 19/271 (7%)

Query: 6   SFRDYNGRISSMDFH-KSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 64
           +   +   +SS+ F       + + S D +IRL+D++    L++  S      +  F+  
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD 252

Query: 65  PTTVIYSSKNGWDESLRLLSLH-DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL 123
            + +   S    D ++RL  L   +  LR   GH   V+S++         SGS D TV 
Sbjct: 253 GSLLASGSS---DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR 309

Query: 124 LWDQRAEKCQGLLRVQGRPAAAY------DDQGLVFAVAFGGYIRMFDARKYEKGPFDIF 177
           LWD    K    L ++G            D   LV   +  G IR++D R  +       
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP-----L 364

Query: 178 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 237
                 S+   V FS DGR++   + +G + + D   G+LL   +      +      FS
Sbjct: 365 KTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT---SRVTSLDFS 421

Query: 238 PEGMFVISGSGDGSVYAWSVRSGKEVASWMS 268
           P+G  + SGS D ++  W +++  +  S+  
Sbjct: 422 PDGKSLASGSSDNTIRLWDLKTSLKSVSFSP 452

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 58/265 (21%), Positives = 97/265 (36%), Gaps = 10/265 (3%)

Query: 46  LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLS 105
            K +   + G  L   +        S           L    +      +GH D + S++
Sbjct: 13  SKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIA 72

Query: 106 LCSSKDCFISGSLDRTVLLWDQRAEKCQ-----GLLRVQGRPAAAYDDQGLVFAVAFGGY 160
                +  +SGS D T+ LWD    +       GL        A     G    +A    
Sbjct: 73  FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL 132

Query: 161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-GHIHVLDSFRGTLLS 219
                          I ++ G       + FS DG+L+   +   G I + D   G  LS
Sbjct: 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192

Query: 220 TYNVKPVSRNSTLEASFSPEGMFVI-SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW 278
           T        +     +FSP+G  +I SGS DG++  W + +GK + S +S  ++  V  +
Sbjct: 193 TLA---GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249

Query: 279 TPGSLMFVTGSSELSFWIPDLSKLG 303
           +P   +  +GSS+ +  + DL    
Sbjct: 250 SPDGSLLASGSSDGTIRLWDLRSSS 274

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 87  DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 126
             + L+  KGH   V S++         SGS D T+ LWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 8e-05
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 89  KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 126
           K LR  KGH   V S++     +   SGS D TV +WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 5  MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD 39
           + + + G ++S+ F     YL + SDD +I+L+D
Sbjct: 6  KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query: 6  SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD 39
          + + + G ++S+ F    + L + SDD ++R++D
Sbjct: 6  TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	99.98
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
PTZ00420	568	coronin; Provisional	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.89
KOG2096	420	consensus WD40 repeat protein [General function pr	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG4227	609	consensus WD40 repeat protein [General function pr	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.88
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.85
KOG4328	498	consensus WD40 protein [Function unknown]	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG2055	514	consensus WD40 repeat protein [General function pr	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.82
KOG1334	559	consensus WD40 repeat protein [General function pr	99.81
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.79
KOG1963	792	consensus WD40 repeat protein [General function pr	99.79
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.78
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.78
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG1310	758	consensus WD40 repeat protein [General function pr	99.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.76
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.76
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.76
KOG1188	376	consensus WD40 repeat protein [General function pr	99.76
KOG0649	325	consensus WD40 repeat protein [General function pr	99.75
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.75
KOG1188	376	consensus WD40 repeat protein [General function pr	99.75
PRK03629	429	tolB translocation protein TolB; Provisional	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.72
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.71
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.71
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.71
KOG2321	703	consensus WD40 repeat protein [General function pr	99.7
PRK04922	433	tolB translocation protein TolB; Provisional	99.69
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.69
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.68
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.68
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.68
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.67
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.66
PRK02889	427	tolB translocation protein TolB; Provisional	99.66
PRK05137	435	tolB translocation protein TolB; Provisional	99.65
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.65
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.63
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.63
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.63
PRK05137	435	tolB translocation protein TolB; Provisional	99.63
PRK03629	429	tolB translocation protein TolB; Provisional	99.63
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.63
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.62
KOG0649	325	consensus WD40 repeat protein [General function pr	99.6
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.6
PRK02889	427	tolB translocation protein TolB; Provisional	99.59
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.58
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.58
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.54
PRK00178	430	tolB translocation protein TolB; Provisional	99.54
PRK04792	448	tolB translocation protein TolB; Provisional	99.53
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.53
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.53
KOG4227	609	consensus WD40 repeat protein [General function pr	99.53
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.53
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.52
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.51
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.51
KOG2321	703	consensus WD40 repeat protein [General function pr	99.5
KOG2139	445	consensus WD40 repeat protein [General function pr	99.5
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.49
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.49
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.49
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.47
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.44
PRK00178	430	tolB translocation protein TolB; Provisional	99.43
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.42
KOG1310	758	consensus WD40 repeat protein [General function pr	99.42
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.41
KOG2315	566	consensus Predicted translation initiation factor	99.41
PRK01029	428	tolB translocation protein TolB; Provisional	99.41
KOG2139	445	consensus WD40 repeat protein [General function pr	99.4
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.39
PRK04792	448	tolB translocation protein TolB; Provisional	99.37
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.35
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.34
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.34
KOG4547	541	consensus WD40 repeat-containing protein [General	99.32
PRK01029	428	tolB translocation protein TolB; Provisional	99.28
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.27
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.27
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.25
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.24
KOG4547	541	consensus WD40 repeat-containing protein [General	99.24
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.24
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.23
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.17
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.17
PRK04043	419	tolB translocation protein TolB; Provisional	99.16
KOG1334	559	consensus WD40 repeat protein [General function pr	99.13
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.13
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.12
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.12
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.1
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.07
PRK04043	419	tolB translocation protein TolB; Provisional	99.07
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.06
KOG2314	698	consensus Translation initiation factor 3, subunit	99.06
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.06
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.03
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.02
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.01
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.0
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.98
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.96
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.95
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.94
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.91
KOG2314	698	consensus Translation initiation factor 3, subunit	98.87
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.87
KOG2315	566	consensus Predicted translation initiation factor	98.84
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.83
COG4946	668	Uncharacterized protein related to the periplasmic	98.83
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.83
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.79
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.78
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.78
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.76
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.76
COG4946	668	Uncharacterized protein related to the periplasmic	98.76
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.75
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.74
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.73
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.71
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.7
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.69
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.69
KOG2695	425	consensus WD40 repeat protein [General function pr	98.66
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.65
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.63
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.63
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.63
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.62
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.62
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.55
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.52
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.52
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.46
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.42
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.42
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.41
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.25
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.24
PRK02888	635	nitrous-oxide reductase; Validated	98.22
KOG2695	425	consensus WD40 repeat protein [General function pr	98.21
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.21
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.18
PRK02888	635	nitrous-oxide reductase; Validated	98.16
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.15
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.13
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.12
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.11
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.09
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.07
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.02
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.01
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.99
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.97
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.94
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.91
COG3391	381	Uncharacterized conserved protein [Function unknow	97.9
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.9
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.8
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.77
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.73
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.73
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.72
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.69
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.58
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.53
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.52
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.51
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.5
KOG3621	726	consensus WD40 repeat-containing protein [General	97.45
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.45
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.41
COG3391	381	Uncharacterized conserved protein [Function unknow	97.32
KOG3621	726	consensus WD40 repeat-containing protein [General	97.3
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.25
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.18
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.17
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.13
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.11
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.1
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.06
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.01
KOG2395	644	consensus Protein involved in vacuole import and d	97.01
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.87
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.86
PRK13616	591	lipoprotein LpqB; Provisional	96.85
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.84
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.75
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.75
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.73
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.72
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.72
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.72
KOG2444	238	consensus WD40 repeat protein [General function pr	96.67
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.65
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.62
KOG2395	644	consensus Protein involved in vacuole import and d	96.59
PHA02713	557	hypothetical protein; Provisional	96.38
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.34
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.3
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.26
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.22
KOG2444	238	consensus WD40 repeat protein [General function pr	96.18
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.17
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.1
PRK13616	591	lipoprotein LpqB; Provisional	96.08
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.02
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.01
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.96
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.8
PHA02713	557	hypothetical protein; Provisional	95.78
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.76
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.58
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.56
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.45
COG5167	776	VID27 Protein involved in vacuole import and degra	94.87
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.78
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.59
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.56
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.18
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.05
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.98
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.82
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.78
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.73
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.69
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.55
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.4
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.32
PRK10115	686	protease 2; Provisional	93.29
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.29
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.15
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.12
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.08
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.91
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.88
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.79
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.67
PHA02790	480	Kelch-like protein; Provisional	92.53
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.34
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.16
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	92.14
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.83
PHA03098	534	kelch-like protein; Provisional	91.78
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.21
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.12
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	90.92
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.86
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.5
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	90.05
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	89.98
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.81
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.19
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.78
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	88.6
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	87.63
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	86.99
PF14727	418	PHTB1_N: PTHB1 N-terminus	86.63
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	86.6
PRK13684	334	Ycf48-like protein; Provisional	85.77
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	84.67
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	84.42
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	84.28
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	83.87
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.65
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	82.3
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	80.49

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.8e-50  Score=326.05  Aligned_cols=303  Identities=48%  Similarity=0.828  Sum_probs=281.9

Q ss_pred             CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      |++.+.|+..++.|+++.|+++|.+|++++.|-+++|||..++++.+++..+++++..++|..+.+.++.++. .+|.+|
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt-k~d~tI   82 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST-KEDDTI   82 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC-CCCCce
Confidence            5677889988999999999999999999999999999999999999999999999999999999988888774 679999


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECC-
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-  159 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  159 (309)
                      |+.++.++++++.|.||+..|+.++.+|-+..|+|+|.|++||+||++..+|...+.....+.++|+|.|.++|++.++ 
T Consensus        83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen   83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCC
Confidence            9999999999999999999999999999999999999999999999999999999998889999999999999999875 


Q ss_pred             EEEEEECCCCCcCCceEEEeC-CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648          160 YIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  238 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp  238 (309)
                      .|++||+|.+..+++..+.+. +.....+.+.|||||++++.++..+.+++.|..+|.++.++..++...+-....+|+|
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP  242 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP  242 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence            999999999999999988877 4556789999999999999999999999999999999999987766555557889999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEeec-CCCCCcEEEECCCeeEEEEccceEEEeeecCCCccc
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA  304 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~~~  304 (309)
                      |++++++|+.||+|.+|+++++.++..+.+ +.+++.++.|+|.-.+++++++.+.+|.|+...+..
T Consensus       243 ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~~~~  309 (311)
T KOG1446|consen  243 DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDALPA  309 (311)
T ss_pred             CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEeccccccCC
Confidence            999999999999999999999999999988 788999999999999999999999999998766643

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-50  Score=335.35  Aligned_cols=285  Identities=24%  Similarity=0.403  Sum_probs=244.0

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      ..+.||.++|.++.|+|+|++|||||.|.|+|+||+++..++++..+|..+|.+++++||++.+++++.   |++|++||
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~---dg~I~lwd  185 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK---DGSIRLWD  185 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc---CCeEEEec
Confidence            357899999999999999999999999999999999999999999999999999999999999998875   88999999


Q ss_pred             ccCCce-EEEeeecccCEEEEEecC-----CCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCCcEEEEE
Q 021648           85 LHDNKY-LRYFKGHHDRVVSLSLCS-----SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVA  156 (309)
Q Consensus        85 ~~~~~~-~~~~~~h~~~v~~v~~~~-----~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  156 (309)
                      .++|++ .+.+.||...|++++|.|     ..++|+|+|.||+++|||+..++++..+..+..+  +......+.+++++
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS  265 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS  265 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC
Confidence            998775 578999999999999975     5678999999999999999888887766544332  33344556677777


Q ss_pred             ECCEEEEEECCCCC---------------------------------c-C-----------------------------C
Q 021648          157 FGGYIRMFDARKYE---------------------------------K-G-----------------------------P  173 (309)
Q Consensus       157 ~~~~i~~~d~~~~~---------------------------------~-~-----------------------------~  173 (309)
                      .|++|++|+.....                                 . +                             .
T Consensus       266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd  345 (480)
T KOG0271|consen  266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD  345 (480)
T ss_pred             CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence            78888888743200                                 0 0                             0


Q ss_pred             c------------eEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648          174 F------------DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  241 (309)
Q Consensus       174 ~------------~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~  241 (309)
                      +            .+....+|..-|+.+.||||++++|+++.|+.|++||.++|+.+.+|.   .|...|..++||.|.+
T Consensus       346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR---GHv~~VYqvawsaDsR  422 (480)
T KOG0271|consen  346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR---GHVAAVYQVAWSADSR  422 (480)
T ss_pred             ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh---hccceeEEEEeccCcc
Confidence            0            111234566778999999999999999999999999999999999887   4667899999999999


Q ss_pred             EEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEe
Q 021648          242 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW  295 (309)
Q Consensus       242 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~  295 (309)
                      .|++||.|.++++||+++.+....+++|..+|.++.|+|||+.+++|+.|  +++|
T Consensus       423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw  478 (480)
T KOG0271|consen  423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW  478 (480)
T ss_pred             EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence            99999999999999999999889999999999999999999999999999  5555

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4e-49  Score=329.53  Aligned_cols=280  Identities=24%  Similarity=0.336  Sum_probs=248.6

Q ss_pred             cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecC--CCEEEEEcCCCCCceeEEEEc
Q 021648            8 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      .|-+.+|..+.|++|++.|||||++|.++||+..+...+++|.+|...+..+.|+|.  +..+++++.   |+++++|++
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~---Dgtvklw~~  248 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASA---DGTVKLWKL  248 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeecc---CCceeeecc
Confidence            356789999999999999999999999999999999999999999999999999997  346666654   999999999


Q ss_pred             cCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec--CceeEEECCCCcEEEEE-ECCEEE
Q 021648           86 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQGLVFAVA-FGGYIR  162 (309)
Q Consensus        86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~i~  162 (309)
                      .+...+..+.||..+|..|+|+|+|++|+|+|.|.+.++||++++........+  +...+++.++|.+++++ .|..-+
T Consensus       249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~R  328 (459)
T KOG0272|consen  249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGR  328 (459)
T ss_pred             CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhh
Confidence            999999999999999999999999999999999999999999988655443322  34467888888777655 688999


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC-CCC
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGM  241 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~  241 (309)
                      +||+|+..    .++-+.+|..+|..|.|||+|..+++|+.|++++|||++....+.+.   +.|.+-|..|.|+| .|.
T Consensus       329 vWDlRtgr----~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i---pAH~nlVS~Vk~~p~~g~  401 (459)
T KOG0272|consen  329 VWDLRTGR----CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI---PAHSNLVSQVKYSPQEGY  401 (459)
T ss_pred             eeecccCc----EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec---ccccchhhheEecccCCe
Confidence            99999865    36677789999999999999999999999999999999987776543   46778899999999 689


Q ss_pred             EEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeee
Q 021648          242 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  297 (309)
Q Consensus       242 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~  297 (309)
                      +|+|+|.|++++||...++.+++++.+|.+.|.++.++||++.+++++.|  +++|.|
T Consensus       402 fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~  459 (459)
T KOG0272|consen  402 FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP  459 (459)
T ss_pred             EEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence            99999999999999999999999999999999999999999999999998  666753

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.2e-44  Score=285.67  Aligned_cols=285  Identities=18%  Similarity=0.281  Sum_probs=248.6

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ..-++|+||.+.|.++.|++|+++|+|+|.||.+.|||.-+....+.+.-...+|+.++|+|.++.++++   |.|+...
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcG---GLdN~Cs  122 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACG---GLDNKCS  122 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEec---CcCceeE
Confidence            4557899999999999999999999999999999999999999999999989999999999999988764   6799999


Q ss_pred             EEEccCC------ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECC-CC-c
Q 021648           82 LLSLHDN------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDD-QG-L  151 (309)
Q Consensus        82 ~~d~~~~------~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~-~~-~  151 (309)
                      +|++.+.      +..+.+.+|.+.+.++.|.+| ..|+|+|.|.++.+||+++++....+.-+.  .......| ++ .
T Consensus       123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             EEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence            9999854      234668999999999999875 589999999999999999998877665433  22334444 33 5


Q ss_pred             EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCcc
Q 021648          152 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  231 (309)
Q Consensus       152 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  231 (309)
                      +++++-|+..++||+|..    ....+..+|.++|++|+|.|+|.-+++|+.|++.++||++....+..|... .....+
T Consensus       202 FvSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-~~~~gi  276 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-SIICGI  276 (343)
T ss_pred             EEecccccceeeeeccCc----ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC-cccCCc
Confidence            666677999999999863    346678899999999999999999999999999999999998888887633 234568


Q ss_pred             ceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEe
Q 021648          232 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW  295 (309)
Q Consensus       232 ~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~  295 (309)
                      .+++||..||+|.+|..|.++.|||.-.++.+..+.+|...|++|..+|||..+++|+-|  +++|
T Consensus       277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW  342 (343)
T ss_pred             eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence            899999999999999999999999999999999999999999999999999999999998  6666

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.1e-43  Score=276.32  Aligned_cols=278  Identities=20%  Similarity=0.280  Sum_probs=226.9

Q ss_pred             CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc--eEEEeeecccCE
Q 021648           24 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--YLRYFKGHHDRV  101 (309)
Q Consensus        24 ~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~--~~~~~~~h~~~v  101 (309)
                      -+|+|+|+|.|||+|.+.+|.|.+++......|..+++.|++..++++.    ...||+||+.+++  ++.++.+|.+.|
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~----~qhvRlyD~~S~np~Pv~t~e~h~kNV   86 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG----NQHVRLYDLNSNNPNPVATFEGHTKNV   86 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc----CCeeEEEEccCCCCCceeEEeccCCce
Confidence            5899999999999999999999999999999999999999999888764    5789999998865  689999999999


Q ss_pred             EEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC-ceeEEEC-CCCcEEEEEECCEEEEEECCCCCcCCceEEEe
Q 021648          102 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV  179 (309)
Q Consensus       102 ~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  179 (309)
                      ++|.|..+|+++.|||.||++||||+|...+...+.... .+.+... ++..++.+..+|.|++||++...   +.....
T Consensus        87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~---c~~~li  163 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS---CTHELI  163 (311)
T ss_pred             EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc---cccccC
Confidence            999999999999999999999999999987777665442 2334444 45678877788999999997632   111111


Q ss_pred             CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe---EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEE
Q 021648          180 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT---LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS  256 (309)
Q Consensus       180 ~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd  256 (309)
                      -.....+.+++..|||++++++...|+.++|++....   .+........|.+.+..+.||||+++||++|.|.+++||+
T Consensus       164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn  243 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN  243 (311)
T ss_pred             CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence            1223568899999999999999999999999986533   2222222234667788999999999999999999999999


Q ss_pred             CCCC-ceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeec-CCCccccccC
Q 021648          257 VRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD-LSKLGAYVGR  308 (309)
Q Consensus       257 ~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~-~~~~~~~~~~  308 (309)
                      +++- +....+.+|..-+...+||.|+++|++|++|  .++|.++ .+.+.++-||
T Consensus       244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh  299 (311)
T KOG0315|consen  244 TDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH  299 (311)
T ss_pred             cCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence            9886 3445578999999999999999999999998  7777554 4446667665

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.5e-42  Score=279.01  Aligned_cols=290  Identities=20%  Similarity=0.326  Sum_probs=245.0

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC-CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      -++|.+.+|+++|..+.|+|+|..|||||.|+.|-+|++.. -+...++.+|...|+.+.+.+++..+++++.   |.++
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt---Dk~v  114 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT---DKTV  114 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC---CceE
Confidence            36788999999999999999999999999999999999752 3335678899999999999999999998865   9999


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeeeeeeecC-ceeEEE-CCCCcEEEEEE
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAY-DDQGLVFAVAF  157 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~  157 (309)
                      +.||+++|+.++.+++|.+-|++++-+.-| ..+.|++.||++++||+|+..++.++..+. .....+ +....+++++.
T Consensus       115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggI  194 (338)
T KOG0265|consen  115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGI  194 (338)
T ss_pred             EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccc
Confidence            999999999999999999999999844333 367899999999999999887777663221 123334 34568999999


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC----eEeEEeeecCCCC--Ccc
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----TLLSTYNVKPVSR--NST  231 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~----~~~~~~~~~~~~~--~~~  231 (309)
                      |+.|++||+|+.+    ..+.+.|+...|..+..||+|.++.+.++|.++++||.+.-    .++..+..+ .|.  ...
T Consensus       195 dn~ikvWd~r~~d----~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~-~hnfeknl  269 (338)
T KOG0265|consen  195 DNDIKVWDLRKND----GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH-IHNFEKNL  269 (338)
T ss_pred             cCceeeeccccCc----ceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc-hhhhhhhc
Confidence            9999999998643    36778899999999999999999999999999999997642    224444322 222  234


Q ss_pred             ceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          232 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       232 ~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      ..++|+|+++++.+|+.|..+++||......+..+++|.+.|++++|+|...++.++++|.++++-|+
T Consensus       270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             ceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence            67899999999999999999999999988899999999999999999999999999999999998765

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-40  Score=263.04  Aligned_cols=283  Identities=19%  Similarity=0.340  Sum_probs=230.2

Q ss_pred             ccceEecCCCcceEEEEeCCC-CCEEEEeeCCCcEEEEEcC-----CCceeeeeeccccceeEEEEecCCCEEEEEcCCC
Q 021648            2 EVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVT-----AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   75 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~-~~~l~t~s~D~~v~iWd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g   75 (309)
                      ++.-++++|++.|+.++..+. ...+++++.|.++.+|++.     .|...+.+.+|...|..+++++++++.++++   
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s---   82 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS---   82 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc---
Confidence            455688999999999999886 5789999999999999875     5777899999999999999999999998775   


Q ss_pred             CCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC----ceeEEECCC--
Q 021648           76 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG----RPAAAYDDQ--  149 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~----~~~~~~~~~--  149 (309)
                      ||+++|+||+++++..+.|.||...|.+++|++|++.++|||.|++|++|+.... |.-++....    .....+.|.  
T Consensus        83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~  161 (315)
T KOG0279|consen   83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNES  161 (315)
T ss_pred             ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCC
Confidence            6999999999999999999999999999999999999999999999999997554 333332221    234566655  


Q ss_pred             -CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCC
Q 021648          150 -GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  228 (309)
Q Consensus       150 -~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~  228 (309)
                       ..++.++.|+++++||+++.+..    ..+-+|...++.+++||||...++|+.||.+.+||+..++.+.++.    +.
T Consensus       162 ~p~Ivs~s~DktvKvWnl~~~~l~----~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~----a~  233 (315)
T KOG0279|consen  162 NPIIVSASWDKTVKVWNLRNCQLR----TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE----AF  233 (315)
T ss_pred             CcEEEEccCCceEEEEccCCcchh----hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc----CC
Confidence             34666678999999999875432    2344677789999999999999999999999999999999887765    45


Q ss_pred             CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeec----C-----CCCCcEEEECCCeeEEEEccce--EEEeee
Q 021648          229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS----F-----DTEPPVIKWTPGSLMFVTGSSE--LSFWIP  297 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~----~-----~~~v~~l~~~p~~~~l~s~~~d--~~~~~~  297 (309)
                      ..|.+++|+|+- +.+.+..+..|+|||+.++..+.++..    .     .....+++|++||+.|.+|-.|  +++|..
T Consensus       234 ~~v~sl~fspnr-ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  234 DIVNSLCFSPNR-YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV  312 (315)
T ss_pred             CeEeeEEecCCc-eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence            678899999985 445555666799999999888776532    1     1123558999999988888877  666654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-41  Score=263.50  Aligned_cols=285  Identities=22%  Similarity=0.342  Sum_probs=235.1

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      .+.+..|+++|.++.|+-||+|.+|++.|++||+|+...|.+++++.+|...|..++.+.+...++++   |.|..+.+|
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~---GgDk~v~vw   86 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASC---GGDKAVQVW   86 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccC---CCCceEEEE
Confidence            35678899999999999999999999999999999999999999999999999999999998888765   349999999


Q ss_pred             EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeee--eeecCceeEEE-CCCCcEEEEEECCE
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL--LRVQGRPAAAY-DDQGLVFAVAFGGY  160 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~  160 (309)
                      |+++|+.++.+.||.+.|+.+.|+.+...++|||.|.++++||.++......  +.......... -....+++++.||+
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGt  166 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGT  166 (307)
T ss_pred             EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCc
Confidence            9999999999999999999999999999999999999999999887654332  22111111122 23456888888999


Q ss_pred             EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC
Q 021648          161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  240 (309)
Q Consensus       161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g  240 (309)
                      +|.||+|..+..      ...-..++++++||+||+..++++.|+++++.|-.+|+++..+..+-. ...-..++++...
T Consensus       167 vRtydiR~G~l~------sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn-~eykldc~l~qsd  239 (307)
T KOG0316|consen  167 VRTYDIRKGTLS------SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN-MEYKLDCCLNQSD  239 (307)
T ss_pred             EEEEEeecceee------hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc-ceeeeeeeecccc
Confidence            999999875421      111124799999999999999999999999999999999988875322 2334578899889


Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEeecCCCC-CcEEEECCCeeEEEE-ccceEEEeeec
Q 021648          241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTE-PPVIKWTPGSLMFVT-GSSELSFWIPD  298 (309)
Q Consensus       241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-v~~l~~~p~~~~l~s-~~~d~~~~~~~  298 (309)
                      .++++||+||.+++||+.....+..+..++.. +..|+++|...-|.+ ++....+|.-+
T Consensus       240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~~  299 (307)
T KOG0316|consen  240 THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWYQE  299 (307)
T ss_pred             eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceeceeeh
Confidence            99999999999999999999999999888887 789999998754444 44446666543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.7e-39  Score=277.32  Aligned_cols=302  Identities=18%  Similarity=0.343  Sum_probs=244.2

Q ss_pred             CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee---ccccceeEEEEecCCCEEEEEcCCCCC
Q 021648            1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHPTTVIYSSKNGWD   77 (309)
Q Consensus         1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~s~~g~d   77 (309)
                      |++-++++.|+.=|+++.|+|||+++||+|.||++.+||-.+|+.+..++   +|+..+..++|+||++++++++.   |
T Consensus       180 FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa---D  256 (603)
T KOG0318|consen  180 FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA---D  256 (603)
T ss_pred             eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC---C
Confidence            46678889999999999999999999999999999999999999999998   88899999999999999999875   8


Q ss_pred             ceeEEEEccCCceE-------------------------------------------EEeeecccCEEEEEecCCCCeEE
Q 021648           78 ESLRLLSLHDNKYL-------------------------------------------RYFKGHHDRVVSLSLCSSKDCFI  114 (309)
Q Consensus        78 ~~i~~~d~~~~~~~-------------------------------------------~~~~~h~~~v~~v~~~~~~~~l~  114 (309)
                      .++|+||+.+++.+                                           +.+.||...|+++..++++++|.
T Consensus       257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~  336 (603)
T KOG0318|consen  257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY  336 (603)
T ss_pred             ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence            99999999876542                                           33679999999999999999999


Q ss_pred             EecCCCcEEEeeCCCceeeeee-eec--CceeEEECCCCcEEEEEECCEEEEEECCCC--C--------cCCceE-----
Q 021648          115 SGSLDRTVLLWDQRAEKCQGLL-RVQ--GRPAAAYDDQGLVFAVAFGGYIRMFDARKY--E--------KGPFDI-----  176 (309)
Q Consensus       115 s~s~Dg~v~~Wd~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~--------~~~~~~-----  176 (309)
                      ||+.||.|.-||..++...... +.+  ..........+.+++++.|+++++.++...  .        .++..+     
T Consensus       337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d  416 (603)
T KOG0318|consen  337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD  416 (603)
T ss_pred             eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence            9999999999998877654432 111  122344556688999999999999976321  0        011100     


Q ss_pred             ------------EEeCC--------CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648          177 ------------FSVGG--------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       177 ------------~~~~~--------~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                                  ..+..        ......+++++|++..++.|+.|++|++|.+..+++..+... ..|..++..++|
T Consensus       417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~-~~h~a~iT~vay  495 (603)
T KOG0318|consen  417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL-LEHRAAITDVAY  495 (603)
T ss_pred             CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee-ecccCCceEEEE
Confidence                        00000        112456789999999999999999999999877665443222 236788999999


Q ss_pred             CCCCCEEEEEcCCCcEEEEECCCCceEEE-eecCCCCCcEEEECCCeeEEEEccceEEEeeecCCCccccc
Q 021648          237 SPEGMFVISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYV  306 (309)
Q Consensus       237 sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~~~~~  306 (309)
                      |||+.|||+|...+.+.+||+.+.+.... +.-|++.|.+++|+|+.+++|+|+-|..+.+|+..++.+.+
T Consensus       496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i  566 (603)
T KOG0318|consen  496 SPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHI  566 (603)
T ss_pred             CCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhhe
Confidence            99999999999999999999998776333 44599999999999999999999999888888888887654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.2e-41  Score=283.22  Aligned_cols=245  Identities=20%  Similarity=0.317  Sum_probs=221.3

Q ss_pred             ccceEecCCCcceEEEEeCCC--CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648            2 EVGMSFRDYNGRISSMDFHKS--SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~--~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      +++.+|.||++.|.++.|+|.  +.-||||+.||++++|++++-+.++.+.+|...|..++|+|+|+++.+++.   |.+
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf---D~t  284 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASF---DST  284 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccc---ccc
Confidence            567899999999999999997  568999999999999999998999999999999999999999999998874   999


Q ss_pred             eEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEE-
Q 021648           80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVA-  156 (309)
Q Consensus        80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-  156 (309)
                      .|+||+++++.+.-..||...|.+++|.+||..++|||.|..-|+||+++++++..+..+.  ...+.++|.|.-++++ 
T Consensus       285 WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs  364 (459)
T KOG0272|consen  285 WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS  364 (459)
T ss_pred             hhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC
Confidence            9999999999988899999999999999999999999999999999999999998876543  3356788999866655 


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  235 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      .|+++++||+|....    .+.+-.|.+-|+.|+|+| .|.+|++++.|++++||...+..++.++.   +|.+.|.+++
T Consensus       365 ~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa---GHe~kV~s~D  437 (459)
T KOG0272|consen  365 SDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA---GHEGKVISLD  437 (459)
T ss_pred             CCCcEEEeeeccccc----ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc---CCccceEEEE
Confidence            689999999986432    567777888899999999 78999999999999999999988888765   4778899999


Q ss_pred             ECCCCCEEEEEcCCCcEEEEE
Q 021648          236 FSPEGMFVISGSGDGSVYAWS  256 (309)
Q Consensus       236 ~sp~g~~l~s~s~Dg~i~vwd  256 (309)
                      ++||+++++|+|.|.+|++|.
T Consensus       438 is~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  438 ISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             eccCCceEEEeccCceeeecc
Confidence            999999999999999999995

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.7e-38  Score=285.21  Aligned_cols=290  Identities=24%  Similarity=0.401  Sum_probs=242.9

Q ss_pred             eEecCC-CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            5 MSFRDY-NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         5 ~~~~~h-~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ..+.+| ...|.++.|+++|+++++++.|+++++|+..+++  .++++.+|...|..++|++++.++++++.   |.++|
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~---D~tir  228 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD---DKTLR  228 (456)
T ss_pred             eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC---CceEE
Confidence            344454 7789999999999999999999999999998887  78888999999999999999998888875   89999


Q ss_pred             EEEc-cCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEE-E
Q 021648           82 LLSL-HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVA-F  157 (309)
Q Consensus        82 ~~d~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~  157 (309)
                      +||+ ..+..++++++|...|++++|+|+++.+++|+.|++|++||++++++...+..+.  ...+.+.+++.+++++ .
T Consensus       229 iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~  308 (456)
T KOG0266|consen  229 IWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY  308 (456)
T ss_pred             EeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC
Confidence            9999 5568999999999999999999999999999999999999999999888876543  3456777777666655 5


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCCCC--CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  235 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      |+.|++||+.+....  ....+.+...  .+.+++|+|+|.+++++..|+++++||+.++.....+..+.....++....
T Consensus       309 d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  309 DGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             CccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence            899999999875522  1122222222  589999999999999999999999999999988887765432212344455


Q ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC-CCCCcEEEECCCeeEEEEcc--ceEEEeeecC
Q 021648          236 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTPGSLMFVTGS--SELSFWIPDL  299 (309)
Q Consensus       236 ~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~~p~~~~l~s~~--~d~~~~~~~~  299 (309)
                      +++.|+++++|+.|+.|++||+.++..+..+.+| ...+..++++|..+++++++  .|..++.|..
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence            6889999999999999999999999889999999 88889999999999999998  5766666654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.6e-39  Score=286.74  Aligned_cols=249  Identities=22%  Similarity=0.351  Sum_probs=218.3

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc-------------------------------eeeeeeccc
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-------------------------------CLKTINSKK   53 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~-------------------------------~~~~~~~~~   53 (309)
                      .+|..-...++|..|++|+++||-|-.|-.|++|.+...+                               ..+++.+|.
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~  451 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS  451 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence            4555555679999999999999999999999999876211                               122477899


Q ss_pred             cceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee
Q 021648           54 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ  133 (309)
Q Consensus        54 ~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~  133 (309)
                      .+|..+.|+|+.++++++|.   |.++|+|.+.+..++..++||..+|+.|.|+|-|-+|||+|.|++-++|.....++.
T Consensus       452 GPVyg~sFsPd~rfLlScSE---D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl  528 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSE---DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL  528 (707)
T ss_pred             CceeeeeecccccceeeccC---CcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch
Confidence            99999999999999999875   899999999999999999999999999999999999999999999999986443221


Q ss_pred             eeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC
Q 021648          134 GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  213 (309)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~  213 (309)
                      .                                           ...+|.+++.|+.|.|+..++++|+.|.+||+||..
T Consensus       529 R-------------------------------------------ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~  565 (707)
T KOG0263|consen  529 R-------------------------------------------IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS  565 (707)
T ss_pred             h-------------------------------------------hhcccccccceEEECCcccccccCCCCceEEEEEcC
Confidence            1                                           123567889999999999999999999999999999


Q ss_pred             CCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEE
Q 021648          214 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELS  293 (309)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~  293 (309)
                      +|..+..|.   +|..+|.+++|||+|++|++|++|+.|.+||+.+++.+..+.+|++.|.++.|+.+|..||+|+.|..
T Consensus       566 ~G~~VRiF~---GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns  642 (707)
T KOG0263|consen  566 TGNSVRIFT---GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS  642 (707)
T ss_pred             CCcEEEEec---CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence            999998886   47789999999999999999999999999999999999999999999999999999999999999966


Q ss_pred             EeeecCCCc
Q 021648          294 FWIPDLSKL  302 (309)
Q Consensus       294 ~~~~~~~~~  302 (309)
                      +-.||+-++
T Consensus       643 V~lWD~~~~  651 (707)
T KOG0263|consen  643 VRLWDLTKV  651 (707)
T ss_pred             EEEEEchhh
Confidence            666666444

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.3e-39  Score=265.25  Aligned_cols=257  Identities=25%  Similarity=0.396  Sum_probs=203.6

Q ss_pred             ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEE
Q 021648           44 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL  123 (309)
Q Consensus        44 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~  123 (309)
                      .|-..+.+|..+|.++.|+|++..+++++.   |.++|+||+.+..+..+.++|...|.+|+|+||++.|+||+.||+|+
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsG---D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~  182 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSG---DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR  182 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCC---CceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence            455678999999999999999999998863   99999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCceeee-eeeecCc--eeEEEC------CCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC
Q 021648          124 LWDQRAEKCQG-LLRVQGR--PAAAYD------DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND  194 (309)
Q Consensus       124 ~Wd~~~~~~~~-~~~~~~~--~~~~~~------~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d  194 (309)
                      +||+++++++. .++.+.+  ...++.      +.+.+.+++.||.++|||+..    ...++.+.+|...|+|++.-.+
T Consensus       183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~----~~~~~~lsgHT~~VTCvrwGG~  258 (480)
T KOG0271|consen  183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL----GTCVRTLSGHTASVTCVRWGGE  258 (480)
T ss_pred             EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC----ceEEEEeccCccceEEEEEcCC
Confidence            99999887653 3332222  223332      233455556799999999753    2346778888888888887654


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEeEEee----------------------------------------------------
Q 021648          195 GRLMLLTTMEGHIHVLDSFRGTLLSTYN----------------------------------------------------  222 (309)
Q Consensus       195 g~~l~~~~~dg~v~i~d~~~~~~~~~~~----------------------------------------------------  222 (309)
                      | ++.+++.|++|++|+...|.+..++.                                                    
T Consensus       259 g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e  337 (480)
T KOG0271|consen  259 G-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE  337 (480)
T ss_pred             c-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence            4 56677788888888766543322210                                                    


Q ss_pred             ------------------------ecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEE
Q 021648          223 ------------------------VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW  278 (309)
Q Consensus       223 ------------------------~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~  278 (309)
                                              ....|..-|..+.||||+++||+||-|..|++||.++|+.+.+|.+|-+.|..++|
T Consensus       338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw  417 (480)
T KOG0271|consen  338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW  417 (480)
T ss_pred             eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence                                    00123445677999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEccce--EEEeeecCCCcc-ccccC
Q 021648          279 TPGSLMFVTGSSE--LSFWIPDLSKLG-AYVGR  308 (309)
Q Consensus       279 ~p~~~~l~s~~~d--~~~~~~~~~~~~-~~~~~  308 (309)
                      +.|.++|++++.|  +++|...-.+|. ++.||
T Consensus       418 saDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh  450 (480)
T KOG0271|consen  418 SADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH  450 (480)
T ss_pred             ccCccEEEEcCCCceEEEEEeeeeeecccCCCC
Confidence            9999999999998  667766555553 45555

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.7e-36  Score=257.28  Aligned_cols=284  Identities=26%  Similarity=0.450  Sum_probs=240.7

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      .++|++|+++|++++|+|++++|++++.|+.+++||+.+++....+..|...+..+.+.++++.+++++.   |+.+++|
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~   78 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS---DKTIRLW   78 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC---CCeEEEE
Confidence            4678899999999999999999999999999999999988888888888888889999999888887764   7899999


Q ss_pred             EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEEE-CCE
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAF-GGY  160 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~  160 (309)
                      |+.+++.+..+..|...+.++.|+++++.+++++.|+.+++||+++.+....+....  .....+.+.+.+++++. ++.
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  158 (289)
T cd00200          79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT  158 (289)
T ss_pred             EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence            999988888999999999999999998899999889999999998777665554222  23456667677777776 999


Q ss_pred             EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC
Q 021648          161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  240 (309)
Q Consensus       161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g  240 (309)
                      +++||++..+.    ......+...+.+++++|+++.+++++.++.|++||..++..+..+..   +...+..+.|+|++
T Consensus       159 i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~  231 (289)
T cd00200         159 IKLWDLRTGKC----VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG---HENGVNSVAFSPDG  231 (289)
T ss_pred             EEEEEcccccc----ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh---cCCceEEEEEcCCC
Confidence            99999875331    222334555789999999999999999999999999988877766542   34578889999999


Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648          241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP  297 (309)
Q Consensus       241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~  297 (309)
                      .++++++.|+.|++||+.+++.+..+..|...+.+++|+|+++.+++++.|..+.+|
T Consensus       232 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW  288 (289)
T ss_pred             cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence            999999999999999999988888888999999999999999999999998555544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.6e-38  Score=258.46  Aligned_cols=284  Identities=17%  Similarity=0.272  Sum_probs=239.9

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      +.+.+.+|..+|+.+-|.|+-.++++++.|++|++||..+|++.+.+++|...+..+.|...|.+++.+|.   |-.+++
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs---Dl~~~L  176 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS---DLSAKL  176 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC---ccchhh
Confidence            44567789999999999999999999999999999999999999999999999999999999999998876   667999


Q ss_pred             EEccC-CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCCcEEEEE-EC
Q 021648           83 LSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVA-FG  158 (309)
Q Consensus        83 ~d~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~  158 (309)
                      ||+.+ -++++.+.||...|.++.|-|.|.+++|++.|.+|+.||+.++-|+.++..+..-  ......++.+++.+ .|
T Consensus       177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d  256 (406)
T KOG0295|consen  177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND  256 (406)
T ss_pred             eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence            99976 6678899999999999999999999999999999999999999998887654432  23445677777765 57


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc---------------CCCEEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN---------------DGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  223 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~---------------dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~  223 (309)
                      .++++|-+.+.+-.    ..+..|.-.+.++++-|               .+.++.+++-|++|++||+.++.++.++. 
T Consensus       257 qtl~vW~~~t~~~k----~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-  331 (406)
T KOG0295|consen  257 QTLRVWVVATKQCK----AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-  331 (406)
T ss_pred             ceEEEEEeccchhh----hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-
Confidence            99999987653110    01112223344444322               23689999999999999999999998876 


Q ss_pred             cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEee
Q 021648          224 KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  296 (309)
Q Consensus       224 ~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~  296 (309)
                        .|.+.|..++|+|-|+||+|+.+|++++|||+.++++++++..|+..++++.|+.+..++++|+=|  +++|+
T Consensus       332 --ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  332 --GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             --cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence              467889999999999999999999999999999999999999999999999999999999999988  44453

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-37  Score=247.07  Aligned_cols=249  Identities=16%  Similarity=0.263  Sum_probs=202.7

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      .+.+.|.||+-.|+.+..++||++.+|+|+|+++|+||+.+|++.+.|.+|...|.+++|+++..+++++|.   |.+++
T Consensus        54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr---DkTik  130 (315)
T KOG0279|consen   54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR---DKTIK  130 (315)
T ss_pred             ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCC---cceee
Confidence            457889999999999999999999999999999999999999999999999999999999999999999886   99999


Q ss_pred             EEEccCCceEEEee-ecccCEEEEEecCC--CCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEE
Q 021648           82 LLSLHDNKYLRYFK-GHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVA  156 (309)
Q Consensus        82 ~~d~~~~~~~~~~~-~h~~~v~~v~~~~~--~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  156 (309)
                      +|+...+....... +|.+.|.++.|+|+  .-+++++|+|++|++||+++-+....+..+.  .+.+.++|+|.+.+.+
T Consensus       131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG  210 (315)
T KOG0279|consen  131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG  210 (315)
T ss_pred             eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence            99986644322222 23789999999997  5589999999999999998876655543322  3457788888877765


Q ss_pred             -ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCC------CC
Q 021648          157 -FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS------RN  229 (309)
Q Consensus       157 -~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~------~~  229 (309)
                       .||.+.+||++..+.    ++.+ ++...|++++|+|+...|+.+.. ..|+|||+.++..+.++......      ..
T Consensus       211 gkdg~~~LwdL~~~k~----lysl-~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~  284 (315)
T KOG0279|consen  211 GKDGEAMLWDLNEGKN----LYSL-EAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDP  284 (315)
T ss_pred             CCCceEEEEEccCCce----eEec-cCCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCc
Confidence             689999999976432    4444 34568999999998877766554 44999999998888776543221      12


Q ss_pred             ccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          230 STLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      .+..++|++||+.|++|-.|+.|++|.+..
T Consensus       285 ~clslaws~dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  285 ICLSLAWSADGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             EEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence            356789999999999999999999999853

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.1e-38  Score=263.75  Aligned_cols=287  Identities=23%  Similarity=0.339  Sum_probs=229.4

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC---ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +.|..|+++|.-+.||++|++|||||.|.|..||++..-   +..+++.+|.++|..+.|+||.+++++++.   |..++
T Consensus       218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~---~e~~~  294 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF---DEVLS  294 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc---hHhee
Confidence            567899999999999999999999999999999988643   346889999999999999999999998754   77899


Q ss_pred             EEEccCCceEEEee-ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeee---eecCceeEEECCCC-cEEEEE
Q 021648           82 LLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQG-LVFAVA  156 (309)
Q Consensus        82 ~~d~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~  156 (309)
                      +||+.+|..+..+. +|...+.+++|+||+..+++|+.|+++..||+..+. ....   +.+.....+..+++ .++++.
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVT  373 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEe
Confidence            99999998776664 456889999999999999999999999999985432 2111   12222234444444 567777


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      .|..|++++........     +-....++.++++|.||+++++.-.+..+++||+....++..|..+.. ...++.-+|
T Consensus       374 ~d~~i~l~~~e~~~dr~-----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq-~~fiIrSCF  447 (519)
T KOG0293|consen  374 VDKKIRLYNREARVDRG-----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ-GHFIIRSCF  447 (519)
T ss_pred             cccceeeechhhhhhhc-----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc-cceEEEecc
Confidence            89999999865432111     111235789999999999999999999999999987776666654332 234556677


Q ss_pred             CC-CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCe-eEEEEccceEEEeeecCCC
Q 021648          237 SP-EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSK  301 (309)
Q Consensus       237 sp-~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~s~~~d~~~~~~~~~~  301 (309)
                      .- +..++|+||+|+.|+||+..+++++.++.+|...|++|+|+|.. .+||+|+.|.++.+|.+++
T Consensus       448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            54 56999999999999999999999999999999999999999965 6999999995555554443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.4e-38  Score=269.08  Aligned_cols=288  Identities=17%  Similarity=0.287  Sum_probs=230.7

Q ss_pred             ccceEecCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCC-CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648            2 EVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      ++++++.||+..|+++.|.| .+.+|+++|.|+.|+||++.. +.|++++.+|..+|..++|+.++..+++++   +|..
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s---fD~~  281 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSAS---FDRF  281 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeee---ccee
Confidence            36789999999999999999 889999999999999999975 999999999999999999999999999876   4999


Q ss_pred             eEEEEccCCceEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeeeeeee--cCceeEEECCCC-cEEEE
Q 021648           80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRV--QGRPAAAYDDQG-LVFAV  155 (309)
Q Consensus        80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~  155 (309)
                      +++||.++|+++..+. -...+.++.|+||+ +.|++|+.|+.|+.||+++++.+..+..  .......|-+.+ .++++
T Consensus       282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence            9999999999887764 22457899999998 8999999999999999999986544322  222334555554 56666


Q ss_pred             EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe---EEeeecCCCCCccc
Q 021648          156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL---STYNVKPVSRNSTL  232 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~---~~~~~~~~~~~~~~  232 (309)
                      +.|+.+++|+.+..-.-.+   ......-...+++.+|++.++++-+.|..|.+|.+...-.+   ..|+.+.. .+.-+
T Consensus       361 SDdks~riWe~~~~v~ik~---i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v-aGys~  436 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKN---IADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV-AGYSC  436 (503)
T ss_pred             ccCccEEEEEcCCCccchh---hcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec-cCcee
Confidence            6789999999765321111   11112234568899999999999999999999986443222   33443322 34556


Q ss_pred             eEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCe-eEEEEccceEEEeee
Q 021648          233 EASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIP  297 (309)
Q Consensus       233 ~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~s~~~d~~~~~~  297 (309)
                      .|.|||||++|++|+.||.+.+||..+.+.+.++.+|++.+..+.|||.. ..+|+++-|..+.+|
T Consensus       437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw  502 (503)
T KOG0282|consen  437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW  502 (503)
T ss_pred             eEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence            89999999999999999999999999999999999999999999999986 477888877555444

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=9.6e-38  Score=279.31  Aligned_cols=207  Identities=28%  Similarity=0.439  Sum_probs=189.4

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      -+++-||+++|...+|+|+.++|+|+|.|+++|+|.+.+..|+..+.+|.++|..+.|+|.|-++++++   .|++.++|
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas---~D~tArLW  520 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS---HDQTARLW  520 (707)
T ss_pred             eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC---CCceeeee
Confidence            456889999999999999999999999999999999999999999999999999999999988888775   39999999


Q ss_pred             EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEE
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRM  163 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (309)
                      ......+++.+.||.+.|.|+.|+|+.++++|||.|++||+||..++..                            +|+
T Consensus       521 s~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~----------------------------VRi  572 (707)
T KOG0263|consen  521 STDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS----------------------------VRI  572 (707)
T ss_pred             ecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE----------------------------EEE
Confidence            9998999999999999999999999999999999999999999877653                            333


Q ss_pred             EECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEE
Q 021648          164 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV  243 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l  243 (309)
                      |               .||..+|.+++|||+|++|++|+.||.|.+||+..+.++..+..   |.+.+.++.||.||..|
T Consensus       573 F---------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~---Ht~ti~SlsFS~dg~vL  634 (707)
T KOG0263|consen  573 F---------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG---HTGTIYSLSFSRDGNVL  634 (707)
T ss_pred             e---------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc---ccCceeEEEEecCCCEE
Confidence            3               25677899999999999999999999999999999998887764   46788999999999999


Q ss_pred             EEEcCCCcEEEEECCC
Q 021648          244 ISGSGDGSVYAWSVRS  259 (309)
Q Consensus       244 ~s~s~Dg~i~vwd~~~  259 (309)
                      |+||.|.+|++||+..
T Consensus       635 asgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  635 ASGGADNSVRLWDLTK  650 (707)
T ss_pred             EecCCCCeEEEEEchh
Confidence            9999999999999865

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.2e-37  Score=258.21  Aligned_cols=282  Identities=19%  Similarity=0.303  Sum_probs=231.5

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   90 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~   90 (309)
                      +.+|..|.|.|+|++|+||+.-|.+-+|+..+-.-...+..|.++|+.+.+++++..++++..   ++.||+|+.+.+. 
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~---gG~iKyWqpnmnn-  171 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDK---GGMIKYWQPNMNN-  171 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCC---CceEEecccchhh-
Confidence            458999999999999999999999999997443333345689999999999999999998875   6789999987654 


Q ss_pred             EEEeeecc-cCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc--eeEEECCCC-cEEEEEECCEEEEEEC
Q 021648           91 LRYFKGHH-DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQG-LVFAVAFGGYIRMFDA  166 (309)
Q Consensus        91 ~~~~~~h~-~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~i~~~d~  166 (309)
                      ++.+++|+ ..|++++|+|+...|+|||.||+|+|||+...+....++.++-  .++...|.. .+++++.|+.|++||.
T Consensus       172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDp  251 (464)
T KOG0284|consen  172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP  251 (464)
T ss_pred             hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecC
Confidence            55566666 8999999999888999999999999999998888777765553  344555654 4555567899999999


Q ss_pred             CCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC-CCCEEEE
Q 021648          167 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVIS  245 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~s  245 (309)
                      |...    .+.++++|...|..+.|+|++.+|++++.|..++++|+++.+.+.++.   .|...++++.|+| .-..|.+
T Consensus       252 rSg~----cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r---~Hkkdv~~~~WhP~~~~lfts  324 (464)
T KOG0284|consen  252 RSGS----CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR---GHKKDVTSLTWHPLNESLFTS  324 (464)
T ss_pred             CCcc----hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh---cchhhheeeccccccccceee
Confidence            8754    255777888899999999999999999999999999999766666655   4667889999999 4578899


Q ss_pred             EcCCCcEEEEECCCCceEEEe-ecCCCCCcEEEECCCeeEEEEccceEEEeeecCCCcc
Q 021648          246 GSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG  303 (309)
Q Consensus       246 ~s~Dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~~  303 (309)
                      |+.||.|..|.+...+++..+ .+|...|.+++|+|=|.+|++|+.|..+..|...+++
T Consensus       325 gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~  383 (464)
T KOG0284|consen  325 GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG  383 (464)
T ss_pred             ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence            999999999999866666654 5799999999999999999999998444444444444

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-34  Score=230.59  Aligned_cols=281  Identities=16%  Similarity=0.374  Sum_probs=222.8

Q ss_pred             cceEecCCCcceEEEEeCCC-CCEEEEeeCCCcEEEEEcCC---Cceeeee-eccccceeEEEEecCCCEEEEEcCCCCC
Q 021648            3 VGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTA---ATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGWD   77 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~-~~~l~t~s~D~~v~iWd~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~s~~g~d   77 (309)
                      +.+++++|.+.|..++|+|- |.+|||+|.|+.||||+...   -.|...+ .+|+..|+.++++|++++++++|.   |
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF---D   82 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF---D   82 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec---c
Confidence            56788999999999999997 88999999999999999874   4566555 467888999999999999988875   8


Q ss_pred             ceeEEEEccCC--ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCce---eeeeeeec--CceeEEECCC-
Q 021648           78 ESLRLLSLHDN--KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK---CQGLLRVQ--GRPAAAYDDQ-  149 (309)
Q Consensus        78 ~~i~~~d~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~---~~~~~~~~--~~~~~~~~~~-  149 (309)
                      .++-+|--+.+  +++.++.||..+|.+++|+++|++|||+|.|++|=+|......   +..++..+  ....+...|. 
T Consensus        83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~  162 (312)
T KOG0645|consen   83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE  162 (312)
T ss_pred             ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence            99999986654  5788999999999999999999999999999999999876443   33344322  2334566765 


Q ss_pred             CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCC
Q 021648          150 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  229 (309)
Q Consensus       150 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  229 (309)
                      +.++++++|++|++|+-.. ...-.-+.++.++...+.+++|+|.|..+++++.|++|+||-..+       .....|..
T Consensus       163 dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-------~~~~~~sr  234 (312)
T KOG0645|consen  163 DLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-------DLSGMHSR  234 (312)
T ss_pred             ceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-------Ccchhccc
Confidence            4667778999999997543 111122557788888999999999999999999999999997542       12224556


Q ss_pred             ccceEEECCCCCEEEEEcCCCcEEEEECCCCc--e----EE-EeecCCCCCcEEEECCC-eeEEEEccce--EEEee
Q 021648          230 STLEASFSPEGMFVISGSGDGSVYAWSVRSGK--E----VA-SWMSFDTEPPVIKWTPG-SLMFVTGSSE--LSFWI  296 (309)
Q Consensus       230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~--~----~~-~~~~~~~~v~~l~~~p~-~~~l~s~~~d--~~~~~  296 (309)
                      .+..++|.  ...|+|++.|+.|+++.....-  +    +. .-..|.-.|++|+|+|. ..+|++++.|  +++|.
T Consensus       235 ~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  235 ALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             ceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence            77788997  6689999999999999987531  1    11 22468889999999996 6789999988  55554

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-35  Score=239.86  Aligned_cols=274  Identities=16%  Similarity=0.226  Sum_probs=216.9

Q ss_pred             CCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCC-Ccee-eeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc
Q 021648           10 YNGRISSMDFHK-SSSYLVTASDDESIRLYDVTA-ATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   86 (309)
Q Consensus        10 h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~   86 (309)
                      -++.|++|+||| ...+++.+|+|++||+|+++. |... +....|..++.++||+.++..+++++.   |+++++||+.
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~---Dk~~k~wDL~  102 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGC---DKQAKLWDLA  102 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeecc---CCceEEEEcc
Confidence            457899999999 455677999999999999975 3332 455667889999999999998887754   8999999999


Q ss_pred             CCceEEEeeecccCEEEEEecCCCC--eEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEE
Q 021648           87 DNKYLRYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF  164 (309)
Q Consensus        87 ~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (309)
                      ++ ++..+..|.++|+.+.|-+...  .|+|||+|+++|+||+|..+++.++.++.+....--.......+..+..|.+|
T Consensus       103 S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vy  181 (347)
T KOG0647|consen  103 SG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVY  181 (347)
T ss_pred             CC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEE
Confidence            99 4677888999999999987655  89999999999999999999988888776644332222333444467889999


Q ss_pred             ECCCCCcCCceEEEeCC-CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe--EEeeecCCC------CCccceEE
Q 021648          165 DARKYEKGPFDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL--STYNVKPVS------RNSTLEAS  235 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~-~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~--~~~~~~~~~------~~~~~~~~  235 (309)
                      ++++....   ...... -.-.+++|+..+|....+.|+.+|++.|..+..+...  .+|..|...      ...|.+++
T Consensus       182 nL~n~~te---~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~  258 (347)
T KOG0647|consen  182 NLENPPTE---FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA  258 (347)
T ss_pred             EcCCCcch---hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence            99764321   111111 1236799999999999999999999999888776333  345544311      12466799


Q ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648          236 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       236 ~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      |+|.-..|+|+|.||++..||-....++.+...|+.+|++.+|+-+|.+|+.+-.
T Consensus       259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence            9999999999999999999999988899999999999999999999999987653

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=6.5e-36  Score=245.94  Aligned_cols=284  Identities=17%  Similarity=0.274  Sum_probs=236.7

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ++-+.+.+|.+-|.|+++.|-..+|+|||.|++++|||+.+|....++.+|...|..+++++-..+++++.   .|++|+
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g---edk~VK  218 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG---EDKQVK  218 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec---CCCeeE
Confidence            45677899999999999999999999999999999999999999999999999999999999888988775   489999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eE-EECCCCcEEEEEEC
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AA-AYDDQGLVFAVAFG  158 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~  158 (309)
                      -||++.++.++.+.||...|.+++.+|.-..|+||+.|.++|+||+++...+.++..+..+  .+ +..-++.+++++.|
T Consensus       219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D  298 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD  298 (460)
T ss_pred             EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence            9999999999999999999999999999999999999999999999999888777644322  22 23346789999999


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  238 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp  238 (309)
                      ++|++||++..+.    ...+..+...+.+++..|....+++++.|. ++-|++..|..+..+.   .|...+..++.+.
T Consensus       299 ~tvrlWDl~agkt----~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nls---gh~~iintl~~ns  370 (460)
T KOG0285|consen  299 STVRLWDLRAGKT----MITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLS---GHNAIINTLSVNS  370 (460)
T ss_pred             ceEEEeeeccCce----eEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccc---cccceeeeeeecc
Confidence            9999999987543    345556777899999999999999888775 5779999888887644   4555666777776


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEe---e-----cCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGKEVASW---M-----SFDTEPPVIKWTPGSLMFVTGSSELSFWIP  297 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~---~-----~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~  297 (309)
                      || ++++|++.|.+..||.+++-.....   .     .-.+.|.+-+|...+..|+++..|..+-++
T Consensus       371 D~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~  436 (460)
T KOG0285|consen  371 DG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY  436 (460)
T ss_pred             Cc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence            65 7799999999999999987543222   1     123467889999999999999988444433

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.7e-35  Score=229.09  Aligned_cols=268  Identities=15%  Similarity=0.260  Sum_probs=216.1

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ++++--.+-|+.+.+.|+++.||+|++ ..||+||+.+++  ++.++++|...|+.+.|..++..+++++.   |+++|+
T Consensus        34 rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse---Dgt~kI  109 (311)
T KOG0315|consen   34 RTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE---DGTVKI  109 (311)
T ss_pred             EEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCC---CceEEE
Confidence            455545567999999999999998875 589999999765  47899999889999999999999998764   899999


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec---CceeEEECCCCcEEEEEE-C
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---GRPAAAYDDQGLVFAVAF-G  158 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~  158 (309)
                      ||+..-.+.+.++ |.++|++|..+|+...|++|..+|.|++||+.+..+...+-..   ........+++..++++. -
T Consensus       110 WdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk  188 (311)
T KOG0315|consen  110 WDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK  188 (311)
T ss_pred             EeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCC
Confidence            9999876666665 7899999999999889999999999999999988765544221   123456667887777765 5


Q ss_pred             CEEEEEECCCCCc--CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648          159 GYIRMFDARKYEK--GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       159 ~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      |..++|++-+...  +-.++..+..+...+..+.+|||+++|++++.|.+++||+.... ..-+.... .+...++.++|
T Consensus       189 G~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~-gh~rWvWdc~F  266 (311)
T KOG0315|consen  189 GNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLT-GHQRWVWDCAF  266 (311)
T ss_pred             ccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEee-cCCceEEeeee
Confidence            8999999765321  11223334456667888999999999999999999999998776 22222222 35678999999


Q ss_pred             CCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEEC
Q 021648          237 SPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT  279 (309)
Q Consensus       237 sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~  279 (309)
                      |.||+||+|||.|+.+++||++.++.++...+|-+...|++.+
T Consensus       267 S~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  267 SADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            9999999999999999999999999999999998888887754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.8e-34  Score=279.26  Aligned_cols=282  Identities=16%  Similarity=0.264  Sum_probs=217.1

Q ss_pred             ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC----c----eeeeeeccccceeEEEEecC-CCEEEEEcCCCCC
Q 021648            7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----T----CLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWD   77 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~~~~~s~~g~d   77 (309)
                      +..|.+.|.+++|+|+|++||||+.|++|+|||..+.    .    ....+.. ...+..++|++. +..+++++   .|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~---~D  554 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSN---FE  554 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEe---CC
Confidence            3459999999999999999999999999999997542    1    1122222 346788888875 45666554   48


Q ss_pred             ceeEEEEccCCceEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecC-ceeEEE-CCCCcE-E
Q 021648           78 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAY-DDQGLV-F  153 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~-~~~~~~-~  153 (309)
                      ++|++||+.+++.+..+.+|.+.|++++|+| +++.|+||+.|++|++||++++.+...+.... .....+ .+.+.+ +
T Consensus       555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~la  634 (793)
T PLN00181        555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLA  634 (793)
T ss_pred             CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEE
Confidence            9999999999999999999999999999996 78899999999999999999887766554332 223334 344554 4


Q ss_pred             EEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC------eEeEEeeecCCC
Q 021648          154 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------TLLSTYNVKPVS  227 (309)
Q Consensus       154 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~------~~~~~~~~~~~~  227 (309)
                      +++.|+.|++||+++...   ....+.+|...+..+.|. ++.++++++.|++|++||+..+      ..+..+.   .|
T Consensus       635 tgs~dg~I~iwD~~~~~~---~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~---gh  707 (793)
T PLN00181        635 FGSADHKVYYYDLRNPKL---PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM---GH  707 (793)
T ss_pred             EEeCCCeEEEEECCCCCc---cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc---CC
Confidence            455689999999986432   233455677789999997 7889999999999999998743      3444444   34


Q ss_pred             CCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-------------ecCCCCCcEEEECCCeeEEEEccceEEE
Q 021648          228 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-------------MSFDTEPPVIKWTPGSLMFVTGSSELSF  294 (309)
Q Consensus       228 ~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-------------~~~~~~v~~l~~~p~~~~l~s~~~d~~~  294 (309)
                      ...+..++|+|++++|++|+.|+.|++|+.....++..+             ..|...|.+++|+|++..|++|++|..+
T Consensus       708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I  787 (793)
T PLN00181        708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNI  787 (793)
T ss_pred             CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence            566678899999999999999999999998765443322             2344568999999999999999998666


Q ss_pred             eeecC
Q 021648          295 WIPDL  299 (309)
Q Consensus       295 ~~~~~  299 (309)
                      .+|++
T Consensus       788 ~i~~~  792 (793)
T PLN00181        788 KILEM  792 (793)
T ss_pred             EEEec
Confidence            66553

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.5e-35  Score=261.81  Aligned_cols=293  Identities=16%  Similarity=0.268  Sum_probs=231.9

Q ss_pred             ccceEecC-CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            2 EVGMSFRD-YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         2 ~~~~~~~~-h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      ++++.+++ |++||..++|+|.+.+|+|||.|+.+++||+..+.|++.|.+|...|..++|.|+..+-+..+ ++.|+++
T Consensus        95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~s-g~~D~~v  173 (775)
T KOG0319|consen   95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLAS-GATDGTV  173 (775)
T ss_pred             hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheee-cCCCceE
Confidence            45677787 999999999999999999999999999999999999999999999999999999988633332 2349999


Q ss_pred             EEEEccCCc-eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeee-----------------------
Q 021648           81 RLLSLHDNK-YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-----------------------  136 (309)
Q Consensus        81 ~~~d~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~-----------------------  136 (309)
                      ++||+++.. ++..+..|...|++++|.+|+..++++|.|+.+.+||+.+.+...++                       
T Consensus       174 ~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~  253 (775)
T KOG0319|consen  174 RVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI  253 (775)
T ss_pred             EEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence            999998544 58888999999999999999999999999999999997321100000                       


Q ss_pred             ------------------------------------------------------------ee----cC------------
Q 021648          137 ------------------------------------------------------------RV----QG------------  140 (309)
Q Consensus       137 ------------------------------------------------------------~~----~~------------  140 (309)
                                                                                  +.    .+            
T Consensus       254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG  333 (775)
T KOG0319|consen  254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG  333 (775)
T ss_pred             EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence                                                                        00    00            


Q ss_pred             ----c----------------------------eeEEE--CCCC-cEEEEEECCEEEEEECCCCC---------------
Q 021648          141 ----R----------------------------PAAAY--DDQG-LVFAVAFGGYIRMFDARKYE---------------  170 (309)
Q Consensus       141 ----~----------------------------~~~~~--~~~~-~~~~~~~~~~i~~~d~~~~~---------------  170 (309)
                          +                            .....  ..++ .+++++.|.++++|.+.+..               
T Consensus       334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s  413 (775)
T KOG0319|consen  334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS  413 (775)
T ss_pred             CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence                0                            00000  1223 33334457777777542100               


Q ss_pred             -------------------cCCceEE------------------EeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC
Q 021648          171 -------------------KGPFDIF------------------SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  213 (309)
Q Consensus       171 -------------------~~~~~~~------------------~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~  213 (309)
                                         ...+++.                  ....|..++++|+++|+.+++++|+.|++.+||++.
T Consensus       414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le  493 (775)
T KOG0319|consen  414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE  493 (775)
T ss_pred             cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence                               0001111                  112355789999999999999999999999999999


Q ss_pred             CCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--
Q 021648          214 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--  291 (309)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--  291 (309)
                      ...+..++.   .|...+++|.|+|..+.+||+|.|++|+||.+.+..++++|.+|++.|-.++|-.++++|+|+++|  
T Consensus       494 ~~~l~~vLs---GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl  570 (775)
T KOG0319|consen  494 QLRLLGVLS---GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL  570 (775)
T ss_pred             CceEEEEee---CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc
Confidence            888887776   577889999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             EEEeeec
Q 021648          292 LSFWIPD  298 (309)
Q Consensus       292 ~~~~~~~  298 (309)
                      +++|...
T Consensus       571 iKlWnik  577 (775)
T KOG0319|consen  571 IKLWNIK  577 (775)
T ss_pred             EEEEecc
Confidence            7777653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.6e-35  Score=247.82  Aligned_cols=255  Identities=20%  Similarity=0.317  Sum_probs=207.8

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +++.+|..|+++|.+++|+.+|++|++++.|+++.+||..+|++.+.+..|..+...+.|-.+. .+++++.   |+.|+
T Consensus       267 ~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~F~ts~t---d~~i~  342 (524)
T KOG0273|consen  267 NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND-EFATSST---DGCIH  342 (524)
T ss_pred             hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc-eEeecCC---CceEE
Confidence            5678899999999999999999999999999999999999999999999988775566765544 4444443   88999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEE
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI  161 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (309)
                      |+-+....+++++.||+++|.++.|+|.+..|+|+|.|+|+++|.+....+...+..+.+.         +++..     
T Consensus       343 V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske---------i~t~~-----  408 (524)
T KOG0273|consen  343 VCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE---------IYTIK-----  408 (524)
T ss_pred             EEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccc---------eeeEe-----
Confidence            9999999999999999999999999999999999999999999998776665544332210         11100     


Q ss_pred             EEEECCCCCcCCceEEEeCCCCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC
Q 021648          162 RMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  240 (309)
Q Consensus       162 ~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g  240 (309)
                        |.                   +...+..+| ++..+++++.|++|++||...+.++.++..   |..+|.+++|||+|
T Consensus       409 --ws-------------------p~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k---H~~pVysvafS~~g  464 (524)
T KOG0273|consen  409 --WS-------------------PTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK---HQEPVYSVAFSPNG  464 (524)
T ss_pred             --ec-------------------CCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc---CCCceEEEEecCCC
Confidence              00                   001111222 467899999999999999999999998863   56789999999999


Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      +++|+|+.||.|.+|++++++.+++..+ ++.|..|+|+.+|..++..-+|...+..++
T Consensus       465 ~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  465 RYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             cEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            9999999999999999999999988765 446899999999988887777766665554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.1e-34  Score=244.39  Aligned_cols=278  Identities=16%  Similarity=0.306  Sum_probs=225.8

Q ss_pred             CCCcceEEEEeCCCCC-EEEEeeCCCcEEEEEcCC--Cceee------ee--ec----cccceeEEEEecCCCEEEEEcC
Q 021648            9 DYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTA--ATCLK------TI--NS----KKYGVDLVCFTSHPTTVIYSSK   73 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~--~~~~~------~~--~~----~~~~v~~~~~~~~~~~~~~~s~   73 (309)
                      .|+.+|.+.+|+|-.. ++++|+.|-+.|+|++..  ..+..      .+  .+    ....|++++|+.+|+.+++++.
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~  255 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE  255 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence            3999999999999776 999999999999999864  22211      11  11    1235899999999999999875


Q ss_pred             CCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCcee--EEECCCCc
Q 021648           74 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA--AAYDDQGL  151 (309)
Q Consensus        74 ~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~--~~~~~~~~  151 (309)
                         |+.+|+|+... ..+.++..|+++|.++.|+.+|+++++++-|+++.+||..++.....+.....+.  +.......
T Consensus       256 ---~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~  331 (524)
T KOG0273|consen  256 ---DGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE  331 (524)
T ss_pred             ---CcEEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence               78999999754 5678899999999999999999999999999999999987777655554433321  23344556


Q ss_pred             EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCcc
Q 021648          152 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  231 (309)
Q Consensus       152 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  231 (309)
                      +.+++.|+.|+++.+....    ++.++.+|...|+++.+.|.|.+|++++.|++++||.+......+.+.   .|...+
T Consensus       332 F~ts~td~~i~V~kv~~~~----P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~---~Hskei  404 (524)
T KOG0273|consen  332 FATSSTDGCIHVCKVGEDR----PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ---AHSKEI  404 (524)
T ss_pred             EeecCCCceEEEEEecCCC----cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh---hhccce
Confidence            6777789999999875422    244566788999999999999999999999999999977666555544   355667


Q ss_pred             ceEEECCC---------CCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeee
Q 021648          232 LEASFSPE---------GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  297 (309)
Q Consensus       232 ~~~~~sp~---------g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~  297 (309)
                      ..+.|+|.         +..+++++.|+++++||+..+.++.+|+.|..+|.+|+|+|+++++++|+-|  +.+|..
T Consensus       405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~  481 (524)
T KOG0273|consen  405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST  481 (524)
T ss_pred             eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence            77888884         4689999999999999999999999999999999999999999999999998  555544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-33  Score=251.75  Aligned_cols=291  Identities=20%  Similarity=0.377  Sum_probs=243.2

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   89 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~   89 (309)
                      ....|++.+|++.-+.||+|=..|...+|++..-.+++.+.-.++++..++|+..|+.++.++..  =+++.||+..+..
T Consensus       264 ~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k--lgQLlVweWqsEs  341 (893)
T KOG0291|consen  264 NSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK--LGQLLVWEWQSES  341 (893)
T ss_pred             cccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc--cceEEEEEeeccc
Confidence            34789999999999999999999999999999999999999988899999999999999998743  4689999999999


Q ss_pred             eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECC-CCcEEEEEECCEEEEEEC
Q 021648           90 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDD-QGLVFAVAFGGYIRMFDA  166 (309)
Q Consensus        90 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~i~~~d~  166 (309)
                      ++...+||-.++++++++|||.+++||+.||.|++||..++-|..++..+.  +....+.. ...+++.+.||+++.||+
T Consensus       342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl  421 (893)
T KOG0291|consen  342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL  421 (893)
T ss_pred             eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence            999999999999999999999999999999999999999999988876543  33444443 446777788999999998


Q ss_pred             CCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC-cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEE
Q 021648          167 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  245 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s  245 (309)
                      ..+..  +..++. +.+.+..+++..|.|..+.+|+.|. .|.+|+..+|.++..+.   +|.++|..++|+|+|..|||
T Consensus       422 kRYrN--fRTft~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs---GHEgPVs~l~f~~~~~~LaS  495 (893)
T KOG0291|consen  422 KRYRN--FRTFTS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS---GHEGPVSGLSFSPDGSLLAS  495 (893)
T ss_pred             cccce--eeeecC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc---CCCCcceeeEEccccCeEEe
Confidence            76542  222221 2234567889999999999998886 79999999999998765   57789999999999999999


Q ss_pred             EcCCCcEEEEECCCCc-eEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeee-cCCCccccccCC
Q 021648          246 GSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP-DLSKLGAYVGRK  309 (309)
Q Consensus       246 ~s~Dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~-~~~~~~~~~~~~  309 (309)
                      +|.|.+|++||+-... .+.++ .+...+..++|+|+|+.++.+.-|  +.+|.+ +...++.+.|||
T Consensus       496 ~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgrk  562 (893)
T KOG0291|consen  496 GSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRK  562 (893)
T ss_pred             ccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchh
Confidence            9999999999995543 34444 567789999999999999888876  777877 444556666664

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.7e-34  Score=228.44  Aligned_cols=238  Identities=21%  Similarity=0.363  Sum_probs=204.8

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC------ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      -+.-|...+|+|.|+++|.|+.|+...||++.+.      ...+.+.+|..-+.++.|.+ ...++++|.   |.++-+|
T Consensus        96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SG---D~TCalW  171 (343)
T KOG0286|consen   96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSG---DMTCALW  171 (343)
T ss_pred             CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCC---CceEEEE
Confidence            3567889999999999999999999999999854      23466888887777777776 446777653   8999999


Q ss_pred             EccCCceEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEE-ECC
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVA-FGG  159 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~  159 (309)
                      |+++++.+..|.||.+.|.+++++| +++.|+||+-|++.++||+|.+.+...+..+.  .+.+.|.|++.-++++ .|+
T Consensus       172 Die~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~  251 (343)
T KOG0286|consen  172 DIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDA  251 (343)
T ss_pred             EcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCc
Confidence            9999999999999999999999999 99999999999999999999999888776543  4567888888777666 468


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      +.|+||+|..  ..+.++.......++++++||..|++|.+|-.|.++.+||.-+++....+.   .|.++|.++..+||
T Consensus       252 tcRlyDlRaD--~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~---GHeNRvScl~~s~D  326 (343)
T KOG0286|consen  252 TCRLYDLRAD--QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA---GHENRVSCLGVSPD  326 (343)
T ss_pred             eeEEEeecCC--cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee---ccCCeeEEEEECCC
Confidence            9999999963  345556655666789999999999999999999999999999998887765   57899999999999


Q ss_pred             CCEEEEEcCCCcEEEEE
Q 021648          240 GMFVISGSGDGSVYAWS  256 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd  256 (309)
                      |.-++|||.|.+++||.
T Consensus       327 G~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  327 GMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CcEEEecchhHheeecC
Confidence            99999999999999994

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-34  Score=260.11  Aligned_cols=295  Identities=17%  Similarity=0.278  Sum_probs=250.4

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      ..|..-+..|..++|+|...+++|+-..|.|++||..=+.++..|..|..+|..++|+|+...++++   |-|..|++|+
T Consensus         3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSG---GDDykIkVWn   79 (1202)
T KOG0292|consen    3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSG---GDDYKIKVWN   79 (1202)
T ss_pred             chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEec---CCccEEEEEe
Confidence            4567778899999999999999999999999999999999999999999999999999999888876   4499999999


Q ss_pred             ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECC-CCcEEEEEECCEE
Q 021648           85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDD-QGLVFAVAFGGYI  161 (309)
Q Consensus        85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~i  161 (309)
                      +.+.+++.++.||.+.|+.+.|++..-+++|+|.|.|||+|+..+.+|+..++.+.+-  ++.+.| ...+++++.|.+|
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV  159 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV  159 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence            9999999999999999999999999889999999999999999999999988766543  345666 4567777789999


Q ss_pred             EEEECCCCCc-----C--------------------CceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe
Q 021648          162 RMFDARKYEK-----G--------------------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  216 (309)
Q Consensus       162 ~~~d~~~~~~-----~--------------------~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~  216 (309)
                      |+||+...+.     +                    ....+-+.||.-.|+-++|.|.-.++++|++|..|++|.+...+
T Consensus       160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence            9999753221     1                    01123466888899999999999999999999999999875433


Q ss_pred             EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce-EEEe
Q 021648          217 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE-LSFW  295 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d-~~~~  295 (309)
                      .-. ......|.+.|.++.|+|....|+|.|+|++|+|||+...+.+.+|..-+.....|+-||..++|+.|... .-++
T Consensus       240 aWE-vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VF  318 (1202)
T KOG0292|consen  240 AWE-VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVF  318 (1202)
T ss_pred             cee-ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEE
Confidence            322 22334577899999999999999999999999999999999999998888889999999999999999863 5555


Q ss_pred             eecCCCcc
Q 021648          296 IPDLSKLG  303 (309)
Q Consensus       296 ~~~~~~~~  303 (309)
                      -.+..+++
T Consensus       319 kleRErpa  326 (1202)
T KOG0292|consen  319 KLERERPA  326 (1202)
T ss_pred             EEcccCce
Confidence            55555544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1.1e-35  Score=248.51  Aligned_cols=282  Identities=24%  Similarity=0.419  Sum_probs=227.2

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ..+..|.++|..+.|-++...|+||+.|..|++|++...+  .+.++.+...+++.+.|.+++..+++++.   |+.+++
T Consensus       169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~---d~~~r~  245 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN---DKNLRL  245 (459)
T ss_pred             hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC---CCceee
Confidence            3467899999999999999999999999999999997655  56788888888999999999988887653   899999


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce-eEEECCCCcEEEEEECCEE
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVAFGGYI  161 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i  161 (309)
                      |++.+.+...++.||++.|+++.|......+++|+.|+++++||+....|..++-..... ..... ...++++-.|++|
T Consensus       246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~-~~~~~SgH~Dkkv  324 (459)
T KOG0288|consen  246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS-ISDVISGHFDKKV  324 (459)
T ss_pred             eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec-ceeeeecccccce
Confidence            999999999999999999999999877667999999999999999888776654322111 11111 2234444468999


Q ss_pred             EEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCC-ccceEEECCCC
Q 021648          162 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN-STLEASFSPEG  240 (309)
Q Consensus       162 ~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~sp~g  240 (309)
                      |+||.|....  .....++   ..+.++..+++|..+++.+-|.++.++|+++.+...++........ ....+.|||++
T Consensus       325 RfwD~Rs~~~--~~sv~~g---g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~  399 (459)
T KOG0288|consen  325 RFWDIRSADK--TRSVPLG---GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG  399 (459)
T ss_pred             EEEeccCCce--eeEeecC---cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC
Confidence            9999886432  1122222   3689999999999999999999999999999888888764322222 24578999999


Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEeecCCC--CCcEEEECCCeeEEEEccce--EEEe
Q 021648          241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDT--EPPVIKWTPGSLMFVTGSSE--LSFW  295 (309)
Q Consensus       241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~--~v~~l~~~p~~~~l~s~~~d--~~~~  295 (309)
                      .|+|+||.||.|+||++.+++....+..-.+  .|++++|+|.|..+++++.+  +.+|
T Consensus       400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            9999999999999999999988766654333  59999999999999999887  5555

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3e-33  Score=249.11  Aligned_cols=282  Identities=15%  Similarity=0.248  Sum_probs=233.0

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCC-CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDD-ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D-~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      +++..+.--..+|..++|+..|.+||-|+.- |.+-||+..+..-+-...+|-..+.+++++|||..+++++.   |+.|
T Consensus       298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e---DgKV  374 (893)
T KOG0291|consen  298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE---DGKV  374 (893)
T ss_pred             eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC---CCcE
Confidence            4556666556789999999999999988864 79999999877767777888889999999999999998875   8899


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc---eeEEECCCCcEEEEE-
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVFAVA-  156 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-  156 (309)
                      |+||..++-|+.+|..|+..|+++.|+..++.++++|.||+||.||+...++..++..+..   .+.+.++.+.++.++ 
T Consensus       375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~  454 (893)
T KOG0291|consen  375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA  454 (893)
T ss_pred             EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence            9999999999999999999999999999999999999999999999999888888766543   345667777766655 


Q ss_pred             EC-CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe-EeEEeeecCCCCCccceE
Q 021648          157 FG-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       157 ~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~  234 (309)
                      .| -.|.+|++++.+.    +..+.||..+|.+++|+|+|..|++++-|++|++||+.... ...++.    ....+..+
T Consensus       455 ~d~F~IfvWS~qTGql----lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~----i~sdvl~v  526 (893)
T KOG0291|consen  455 QDSFEIFVWSVQTGQL----LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE----IRSDVLAV  526 (893)
T ss_pred             cceEEEEEEEeecCee----eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe----eccceeEE
Confidence            44 3799999876542    34578899999999999999999999999999999986542 333443    23567889


Q ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCceEEEee--------------------cCCCCCcEEEECCCeeEEEEccceEEE
Q 021648          235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--------------------SFDTEPPVIKWTPGSLMFVTGSSELSF  294 (309)
Q Consensus       235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~--------------------~~~~~v~~l~~~p~~~~l~s~~~d~~~  294 (309)
                      +|+|||+.||.+..||.|.+||+..+..+.++.                    .-....+.|+|++||..+.+|+.-..+
T Consensus       527 sfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~i  606 (893)
T KOG0291|consen  527 SFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSI  606 (893)
T ss_pred             EEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccE
Confidence            999999999999999999999998765543221                    123567889999999999999975333

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-34  Score=237.07  Aligned_cols=246  Identities=23%  Similarity=0.378  Sum_probs=213.3

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC-CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      ++...++||.++|.+|+|+..|++|||+|.|-.+++||.++ .+|++.+.+|...|.+++|-|.++++++++.   |++|
T Consensus       141 ~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr---D~ti  217 (406)
T KOG0295|consen  141 ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR---DNTI  217 (406)
T ss_pred             hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc---ccce
Confidence            45678899999999999999999999999999999999986 7889999999999999999999999998764   9999


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeE--------EEC-----
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA--------AYD-----  147 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~--------~~~-----  147 (309)
                      +.|++.++-++++|.+|...|+.+..+.||..++|++.|.++++|-+.+.+|...++....+..        .+.     
T Consensus       218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a  297 (406)
T KOG0295|consen  218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA  297 (406)
T ss_pred             eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence            9999999999999999999999999999999999999999999999988876655543332210        111     


Q ss_pred             ----CCCcEEE-EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648          148 ----DQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  222 (309)
Q Consensus       148 ----~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~  222 (309)
                          +.+.++. ++.|++|++||+...    .-++++.+|.+.|..++|+|.|++|++..+|+++++||+..+.++.+.+
T Consensus       298 t~~~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~  373 (406)
T KOG0295|consen  298 TGSTNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE  373 (406)
T ss_pred             cCCCCCccEEEeecccceEEEEeccCC----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence                1223444 456999999998763    4578999999999999999999999999999999999999999988776


Q ss_pred             ecCCCCCccceEEECCCCCEEEEEcCCCcEEEEEC
Q 021648          223 VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  257 (309)
Q Consensus       223 ~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~  257 (309)
                      .   |..-+..++|+.+--+++||+.|-++++|.-
T Consensus       374 a---h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  374 A---HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             C---CcceeEEEecCCCCceEEeccccceeeeeec
Confidence            3   4566788999998899999999999999974

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.4e-33  Score=225.32  Aligned_cols=272  Identities=20%  Similarity=0.273  Sum_probs=210.7

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   90 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~   90 (309)
                      +..|+++.|+|.++.|+.+||||++|+||+...+....+ .|..++..++|.+. ..++++   +.|+.||.+|+++++.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G---~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTG---GLDGQVRRYDLNTGNE   87 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEe---ccCceEEEEEecCCcc
Confidence            568999999999999999999999999999877444444 45668899999874 345554   4599999999998764


Q ss_pred             EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCC
Q 021648           91 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE  170 (309)
Q Consensus        91 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  170 (309)
                       ..+..|.+.|+++.+++-...++|||+|++|++||.+...+...+...++..+....+..++.++.+..+.+||+|+..
T Consensus        88 -~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen   88 -DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             -eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence             4466799999999999888899999999999999998755554443333333333344566666789999999999875


Q ss_pred             cCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC----eEeEEeeecCCC------CCccceEEECCCC
Q 021648          171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----TLLSTYNVKPVS------RNSTLEASFSPEG  240 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~----~~~~~~~~~~~~------~~~~~~~~~sp~g  240 (309)
                      ... +.. ...-..++++|++-|++.-+++++.||+|.+=.....    .....|..|...      ..+|.+++|+|--
T Consensus       167 ~~~-q~r-eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~  244 (323)
T KOG1036|consen  167 EPF-QRR-ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH  244 (323)
T ss_pred             chh-hhc-cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence            421 111 1112246789999999999999999999998443333    223344444222      2367789999999


Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648          241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      +++|||+.||.|.+||+.+.+.+..+...+..|.+++|+-+|.+||.|++
T Consensus       245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            99999999999999999999999999988888999999999999999986

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-34  Score=228.03  Aligned_cols=249  Identities=20%  Similarity=0.378  Sum_probs=214.8

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      +-+|.||+++|.+..++.+..+.||++.|=+.+|||.-+|..++.++. +.-|..++|+.+.++++++   |.+..+|+|
T Consensus        52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~h-khivk~~af~~ds~~lltg---g~ekllrvf  127 (334)
T KOG0278|consen   52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEH-KHIVKAVAFSQDSNYLLTG---GQEKLLRVF  127 (334)
T ss_pred             EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhh-hheeeeEEecccchhhhcc---chHHHhhhh
Confidence            458999999999999999999999999999999999999999998875 4468899999999999976   458899999


Q ss_pred             EccCCc-eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC-ceeEEECCCCcEEEEEECCEE
Q 021648           84 SLHDNK-YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVAFGGYI  161 (309)
Q Consensus        84 d~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i  161 (309)
                      |++..+ +.+.+.+|.+.|+.+.|+...+.++|++.|++||+||.+++..+..+..+. ..++.++.++.+++.+.++.|
T Consensus       128 dln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV  207 (334)
T KOG0278|consen  128 DLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSV  207 (334)
T ss_pred             hccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCcee
Confidence            998754 678899999999999999888899999999999999999998887776653 446778899999999999999


Q ss_pred             EEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648          162 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  241 (309)
Q Consensus       162 ~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~  241 (309)
                      +.||..++..  ++-+   .-+..|.+...+|+...+++|+.|..++.||..+++.+..+.  .+|.++|.++.|+|||.
T Consensus       208 ~Fwdaksf~~--lKs~---k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n--kgh~gpVhcVrFSPdGE  280 (334)
T KOG0278|consen  208 KFWDAKSFGL--LKSY---KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN--KGHFGPVHCVRFSPDGE  280 (334)
T ss_pred             EEeccccccc--eeec---cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecc--cCCCCceEEEEECCCCc
Confidence            9999876542  1111   123467788899999999999999999999999999888753  25678999999999999


Q ss_pred             EEEEEcCCCcEEEEECCCCceE
Q 021648          242 FVISGSGDGSVYAWSVRSGKEV  263 (309)
Q Consensus       242 ~l~s~s~Dg~i~vwd~~~~~~~  263 (309)
                      ..|+||+||+|++|.+..++.-
T Consensus       281 ~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  281 LYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             eeeccCCCceEEEEEecCCCch
Confidence            9999999999999999766543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5e-33  Score=247.60  Aligned_cols=284  Identities=17%  Similarity=0.305  Sum_probs=240.4

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      .++.||...|.++++|.+...++||+ .++++||+..+++|++++...  -+.+.+|-|...+++.+..   .|.+.+||
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k---~Gel~vfd  440 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTK---NGELQVFD  440 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEecc---CCceEEEE
Confidence            35679999999999999988888885 569999999999999999876  3677889999999998876   56899999


Q ss_pred             ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc--------eee-----eeeeec-CceeEEECCCC
Q 021648           85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE--------KCQ-----GLLRVQ-GRPAAAYDDQG  150 (309)
Q Consensus        85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~--------~~~-----~~~~~~-~~~~~~~~~~~  150 (309)
                      +.+...+.+.+.|.+.|+.++.+||++.++|||.|.+|++||++-.        +..     .++... ...+..++|++
T Consensus       441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg  520 (888)
T KOG0306|consen  441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG  520 (888)
T ss_pred             eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence            9999999999999999999999999999999999999999996411        111     111122 12356788999


Q ss_pred             cEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCC
Q 021648          151 LVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  229 (309)
Q Consensus       151 ~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  229 (309)
                      .+++++ .|+++++|=+.+++-    ..++=||.-+|.++.+|||++++++++.|+.|++|-+.=|.+-..+-   .|..
T Consensus       521 k~LaVsLLdnTVkVyflDtlKF----flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f---AHdD  593 (888)
T KOG0306|consen  521 KLLAVSLLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF---AHDD  593 (888)
T ss_pred             cEEEEEeccCeEEEEEecceee----eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh---cccC
Confidence            999988 499999997654321    34566888899999999999999999999999999887777766553   4667


Q ss_pred             ccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCCC
Q 021648          230 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK  301 (309)
Q Consensus       230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~  301 (309)
                      .|.++.|-|+...+.|+|.|+.|+-||-..-+.+.++.+|...|.|++.+|+|.++++++.|..+.+|+.-+
T Consensus       594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            899999999999999999999999999999999999999999999999999999999999996666665444

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.2e-32  Score=218.17  Aligned_cols=275  Identities=14%  Similarity=0.231  Sum_probs=220.6

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeee--eeccccceeEEEEecC-CCEEEEEcCCCCCceeE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLR   81 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~~~~~s~~g~d~~i~   81 (309)
                      +.+++|.+.|.+|+|+.+|..|++|+.|+++++|+++.......  ..+|...|..+|+.|. ++.+++++.   |.+|+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---dk~ir   90 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---DKTIR   90 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC---CceEE
Confidence            45679999999999999999999999999999999987755443  4677777888888774 455665553   88999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC-ceeEEECCCCcEEEEEE-CC
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVAF-GG  159 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~  159 (309)
                      +||+.+++++.......+.+ -+.|+|+|++++.++.|..|.+.|.++.+......... ........++.++.... -|
T Consensus        91 ~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG  169 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG  169 (313)
T ss_pred             EEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence            99999999988877555554 46889999999999999999999998887665544332 22344555554444444 48


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      +|.|......+    ++.++..|.....++.|+|+|+++|+|+.|-.+.+||+..--++..+.   -+.-+|..++||-|
T Consensus       170 ~v~ILsypsLk----pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~d  242 (313)
T KOG1407|consen  170 CVEILSYPSLK----PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHD  242 (313)
T ss_pred             eEEEEeccccc----cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec---cccCceEEEEeccC
Confidence            99998755433    255667787888899999999999999999999999987655555443   24467888999999


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          240 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      |++||+||+|-.|-|=++++|..+.+++ +.++...|+|||...+|+-+++|
T Consensus       243 g~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  243 GRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             cceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            9999999999999999999999998874 67789999999999999998875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.4e-32  Score=225.36  Aligned_cols=284  Identities=12%  Similarity=0.175  Sum_probs=219.5

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +++..+.+|+..|+++.|+.||.+||||+.+|.|+||+..++.....+...-..+.=++++|.+..+++++.   |+.+-
T Consensus        97 e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~---DGsvW  173 (399)
T KOG0296|consen   97 EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST---DGSVW  173 (399)
T ss_pred             cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecC---CCcEE
Confidence            567788999999999999999999999999999999999999888887655445666889998888888875   88999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC---ceeEEECCC-CcEEEEEE
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQ-GLVFAVAF  157 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~  157 (309)
                      .|.+.++...+.+.||..++++=.|.|+|++++++..||+|++||+.++++...+.-..   .+....... ..++.+..
T Consensus       174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~  253 (399)
T KOG0296|consen  174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS  253 (399)
T ss_pred             EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence            99999988899999999999999999999999999999999999999998877664111   111111111 12222223


Q ss_pred             CCEEEEEE--------CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCC
Q 021648          158 GGYIRMFD--------ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  229 (309)
Q Consensus       158 ~~~i~~~d--------~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  229 (309)
                      ++..++-.        ..+...+.+. .........+.++.+|..-.+.|+|+.||+|.|||..+.++.+...    |..
T Consensus       254 e~~~~~~~~~sgKVv~~~n~~~~~l~-~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~----he~  328 (399)
T KOG0296|consen  254 EGVACGVNNGSGKVVNCNNGTVPELK-PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE----HED  328 (399)
T ss_pred             CccEEEEccccceEEEecCCCCcccc-ccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc----CCC
Confidence            33332222        1111111100 0011111234445566677888999999999999998877766543    556


Q ss_pred             ccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEE
Q 021648          230 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF  294 (309)
Q Consensus       230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~  294 (309)
                      .|+.+.|-+ ..+|+++..||.|+.||.++|+.+.++.+|...|.+++++|+.++++|+|.|...
T Consensus       329 ~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a  392 (399)
T KOG0296|consen  329 GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTA  392 (399)
T ss_pred             ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeE
Confidence            789999988 8999999999999999999999999999999999999999999999999998443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.2e-31  Score=230.44  Aligned_cols=284  Identities=17%  Similarity=0.290  Sum_probs=232.3

Q ss_pred             EecCCCcceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            6 SFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      .+.||+..|++++|=|... +++|||.|++|.+|+-.--+-..+++.|..-|.++-|+||++.+++++.   |+++.+||
T Consensus       142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs---Dgki~iyD  218 (603)
T KOG0318|consen  142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS---DGKIYIYD  218 (603)
T ss_pred             eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC---CccEEEEc
Confidence            4679999999999998765 6999999999999986555556678888888999999999999998764   89999999


Q ss_pred             ccCCceEEEee---ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc-----eeEEECCCCcEEEEE
Q 021648           85 LHDNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-----PAAAYDDQGLVFAVA  156 (309)
Q Consensus        85 ~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  156 (309)
                      =.+++.+..+.   +|++.|.+++|+||+..|+|+|.|+++|+||..+.+++.++.+...     ..+.. ..+.+++++
T Consensus       219 Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW-qkd~lItVS  297 (603)
T KOG0318|consen  219 GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW-QKDHLITVS  297 (603)
T ss_pred             CCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE-eCCeEEEEE
Confidence            99999999998   8999999999999999999999999999999999999888876543     12333 377899999


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe-----------EEe----
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL-----------STY----  221 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~-----------~~~----  221 (309)
                      .+|.|.+++.....    ....+.||...+++++.+||+++|.+++.||+|.-||..++..-           ..+    
T Consensus       298 l~G~in~ln~~d~~----~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~  373 (603)
T KOG0318|consen  298 LSGTINYLNPSDPS----VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE  373 (603)
T ss_pred             cCcEEEEecccCCC----hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence            99999999977543    34566789899999999999999999999999999997654311           100    


Q ss_pred             -----------------------------eecCCC----------------------------------CCccceEEECC
Q 021648          222 -----------------------------NVKPVS----------------------------------RNSTLEASFSP  238 (309)
Q Consensus       222 -----------------------------~~~~~~----------------------------------~~~~~~~~~sp  238 (309)
                                                   ....++                                  .-...+++++|
T Consensus       374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~  453 (603)
T KOG0318|consen  374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP  453 (603)
T ss_pred             CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence                                         000000                                  11223588999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCce--EEEeecCCCCCcEEEECCCeeEEEEccce--EEEeee
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  297 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~  297 (309)
                      ++.++|.|+.|+.++||.+...+.  ...+..|.+++++++||||+.+||++..-  +-+|..
T Consensus       454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~  516 (603)
T KOG0318|consen  454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDV  516 (603)
T ss_pred             CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEc
Confidence            999999999999999999977553  33567899999999999999999998754  445544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.5e-32  Score=227.54  Aligned_cols=280  Identities=22%  Similarity=0.327  Sum_probs=216.0

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC---EEEEEcCCCCCceeEEEEc
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~s~~g~d~~i~~~d~   85 (309)
                      .|.+-|++|...  ++.++||++||++||||. .|++++++.+|..++..+++.....   .+++++   .|.++++|-.
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas---~Dqtl~Lw~~  176 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS---MDQTLRLWKW  176 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEec---CCceEEEEEe
Confidence            478889988887  679999999999999996 5899999999999998766654332   355554   5999999998


Q ss_pred             cCCce----EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee-----------------------eeeeee
Q 021648           86 HDNKY----LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-----------------------QGLLRV  138 (309)
Q Consensus        86 ~~~~~----~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~-----------------------~~~~~~  138 (309)
                      +.++.    ++.-+||++.|-+|...+++..++|||+|.++++|+.++...                       ...+.+
T Consensus       177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl  256 (423)
T KOG0313|consen  177 NVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL  256 (423)
T ss_pred             cCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence            87653    445569999999999999999999999999999999321100                       000011


Q ss_pred             cC----ceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 021648          139 QG----RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  214 (309)
Q Consensus       139 ~~----~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~  214 (309)
                      .+    ...+.+.+....++++.|.+|+.||+.....    ...+. .....+++..+|..++|++|+.|.++++||+++
T Consensus       257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~----~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~  331 (423)
T KOG0313|consen  257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL----KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT  331 (423)
T ss_pred             cccccceeeEEEcCCCceEeecccceEEEEEeecccc----eeeee-cCcceeEeecccccceeeecCCCCceeecCCCC
Confidence            11    2235566778889999999999999876432    11111 124578899999999999999999999999987


Q ss_pred             CeEeEEeeecCCCCCccceEEECCC-CCEEEEEcCCCcEEEEECCCCc-eEEEeecCCCCCcEEEECCCeeEEEEccceE
Q 021648          215 GTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTGSSEL  292 (309)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~sp~-g~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~  292 (309)
                      +.-.........|.+.|..+.|+|. -.+|++||.|+++++||+++.+ ++..+.+|...|.++.| ..+.++++|+.|.
T Consensus       332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW-~~~~~IvSGGaD~  410 (423)
T KOG0313|consen  332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW-NEGGLIVSGGADN  410 (423)
T ss_pred             CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEec-cCCceEEeccCcc
Confidence            5322111112257788999999995 5788999999999999999987 89999999999999998 4567899999997


Q ss_pred             EEeeecCC
Q 021648          293 SFWIPDLS  300 (309)
Q Consensus       293 ~~~~~~~~  300 (309)
                      ++.+-..+
T Consensus       411 ~l~i~~~~  418 (423)
T KOG0313|consen  411 KLRIFKGS  418 (423)
T ss_pred             eEEEeccc
Confidence            77655443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.5e-34  Score=243.78  Aligned_cols=246  Identities=20%  Similarity=0.320  Sum_probs=198.2

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC-EEEEEcCCCCCcee
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESL   80 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~i   80 (309)
                      +.+++|.+|+.+|.+++|+++|..++|+|.|+++++||+++|.|+..+.... .+.++.|.|++. .++++   +.|+.|
T Consensus       249 ~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~-~~~cvkf~pd~~n~fl~G---~sd~ki  324 (503)
T KOG0282|consen  249 RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK-VPTCVKFHPDNQNIFLVG---GSDKKI  324 (503)
T ss_pred             ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC-CceeeecCCCCCcEEEEe---cCCCcE
Confidence            4688999999999999999999999999999999999999999999887643 467889999884 44444   458999


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeee---ecCceeEEECCCCcEEE-EE
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAYDDQGLVFA-VA  156 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~  156 (309)
                      +.||+.+++.+..+..|.+.|..+.|-++|++|+|++.|+++++|+.+.+-.+..+.   +...+++...|.+.+++ -+
T Consensus       325 ~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs  404 (503)
T KOG0282|consen  325 RQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS  404 (503)
T ss_pred             EEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence            999999999999999999999999999999999999999999999988765544332   22334556666665554 46


Q ss_pred             ECCEEEEEECCCC-CcCCceEEEeCCCC--CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648          157 FGGYIRMFDARKY-EKGPFDIFSVGGDI--SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  233 (309)
Q Consensus       157 ~~~~i~~~d~~~~-~~~~~~~~~~~~~~--~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~  233 (309)
                      .|+.|.+|.+... +....+.+  .+|.  .-...|.|||||++|++|..||.+.+||..+-.++..+.   .|...++.
T Consensus       405 ~dN~i~ifs~~~~~r~nkkK~f--eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk---ah~~~ci~  479 (503)
T KOG0282|consen  405 MDNYIAIFSTVPPFRLNKKKRF--EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK---AHDQPCIG  479 (503)
T ss_pred             cCceEEEEecccccccCHhhhh--cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc---cCCcceEE
Confidence            7899999985421 11111111  1221  233567899999999999999999999999888877665   35677889


Q ss_pred             EEECCC-CCEEEEEcCCCcEEEEE
Q 021648          234 ASFSPE-GMFVISGSGDGSVYAWS  256 (309)
Q Consensus       234 ~~~sp~-g~~l~s~s~Dg~i~vwd  256 (309)
                      +.|+|. ...+||+|.||.|++||
T Consensus       480 v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  480 VDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEecCCCcceeEecccCceeEecC
Confidence            999995 58999999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2e-32  Score=248.40  Aligned_cols=247  Identities=23%  Similarity=0.405  Sum_probs=204.4

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEc-CCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV-TAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +.+.+.+|...|++++|+|+++++++++.|+++||||+ ..+.+++++.+|...|.+++|+|.++.+++++.   |++||
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~---D~tvr  271 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSD---DGTVR  271 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecC---CCcEE
Confidence            56677899999999999999999999999999999999 567999999999999999999999977777754   99999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCce--eeeeeeec-C---ceeEEECCCCcEEEE
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK--CQGLLRVQ-G---RPAAAYDDQGLVFAV  155 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~--~~~~~~~~-~---~~~~~~~~~~~~~~~  155 (309)
                      +||++++++++.+.+|.+.|.+++|+++++.|++++.|+.|++||+.++.  +...+.-. .   ...+.+++++.++.+
T Consensus       272 iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~  351 (456)
T KOG0266|consen  272 IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS  351 (456)
T ss_pred             EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE
Confidence            99999999999999999999999999999999999999999999999988  33433221 2   234567777766665


Q ss_pred             E-ECCEEEEEECCCCCcCCceEEEeCCCCC---CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCcc
Q 021648          156 A-FGGYIRMFDARKYEKGPFDIFSVGGDIS---DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  231 (309)
Q Consensus       156 ~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  231 (309)
                      + .|+.+++||++....    .....++..   .+.....+++++++++++.|+.|++||..++..+..+..+.  ...+
T Consensus       352 ~~~d~~~~~w~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~--~~~~  425 (456)
T KOG0266|consen  352 ASLDRTLKLWDLRSGKS----VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS--KAAV  425 (456)
T ss_pred             ecCCCeEEEEEccCCcc----eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC--CCce
Confidence            5 567999999986432    122223333   23344568899999999999999999999887777666432  5677


Q ss_pred             ceEEECCCCCEEEEEc--CCCcEEEEECC
Q 021648          232 LEASFSPEGMFVISGS--GDGSVYAWSVR  258 (309)
Q Consensus       232 ~~~~~sp~g~~l~s~s--~Dg~i~vwd~~  258 (309)
                      ..++++|..+++++++  .|+.+++|...
T Consensus       426 ~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  426 SDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eccccCCCcCeeeecCcCCCceEEEecCC
Confidence            8899999999999998  78999999864

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.7e-33  Score=220.59  Aligned_cols=284  Identities=18%  Similarity=0.315  Sum_probs=233.4

Q ss_pred             cceEecCCCcceEEEEeC---CCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648            3 VGMSFRDYNGRISSMDFH---KSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s---~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      .+.+..||+.+|-.++||   |+|-+|++++.|+.-.+-+-++|.=+-+|++|+..|...++..+....++++.   |-+
T Consensus         6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaa---dft   82 (334)
T KOG0278|consen    6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAA---DFT   82 (334)
T ss_pred             CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcc---cch
Confidence            456789999999999998   58999999999999999999999999999999999999998877766655543   889


Q ss_pred             eEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC-----ceeEEECCCCcEEE
Q 021648           80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-----RPAAAYDDQGLVFA  154 (309)
Q Consensus        80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  154 (309)
                      .++||.-+|..+..|. |+--|++++|+.|.++|+||+.++.+|++|+...+-.. ..+.+     +...-...+..+++
T Consensus        83 akvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD~~iLS  160 (334)
T KOG0278|consen   83 AKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHEDKCILS  160 (334)
T ss_pred             hhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccCceEEe
Confidence            9999999999888886 88899999999999999999999999999986543211 11111     11223345667888


Q ss_pred             EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          155 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       155 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                      .+.|++||+||.|+...    +.++. -..+++++.+++||+++ +....+.|..||..+-.+++.+..    ...|.+.
T Consensus       161 Sadd~tVRLWD~rTgt~----v~sL~-~~s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~----P~nV~SA  230 (334)
T KOG0278|consen  161 SADDKTVRLWDHRTGTE----VQSLE-FNSPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKM----PCNVESA  230 (334)
T ss_pred             eccCCceEEEEeccCcE----EEEEe-cCCCCcceeeccCCCEE-EEecCceeEEeccccccceeeccC----ccccccc
Confidence            88899999999987542    22332 23578999999999976 455677899999999888887764    2456678


Q ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCceEEEe-ecCCCCCcEEEECCCeeEEEEccce--EEEeeecCCC
Q 021648          235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSK  301 (309)
Q Consensus       235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~~~~  301 (309)
                      +++|+-.++++|++|..++.||..+++.+..+ ++|.++|.||.|+|+|...++|++|  +++|..-..+
T Consensus       231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             cccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            89999999999999999999999999999886 8999999999999999999999998  6677554433

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-32  Score=240.22  Aligned_cols=279  Identities=19%  Similarity=0.310  Sum_probs=230.8

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ++-++|..|+..|.+|.|+|...+++++-+.|.|.|||.++....+.++-...+|+.+.|-.-.+.++++|.   |..||
T Consensus         4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsD---D~~Ir   80 (794)
T KOG0276|consen    4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSD---DMQIR   80 (794)
T ss_pred             hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecC---CceEE
Confidence            445678889999999999999999999999999999999999999999998999999999998999999986   88999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc-eeeeeeeecC--ceeEEECCC--CcEEEEE
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLLRVQG--RPAAAYDDQ--GLVFAVA  156 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~-~~~~~~~~~~--~~~~~~~~~--~~~~~~~  156 (309)
                      +|++++++.++.|..|.+-|++++.+|..-+++|+|.|.+|++||.+.+ .|..++..+.  ....++.|.  ..+.+++
T Consensus        81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s  160 (794)
T KOG0276|consen   81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS  160 (794)
T ss_pred             EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence            9999999999999999999999999999899999999999999997654 2233333222  234455543  3566667


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC--CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                      .|++|++|.+..    +...+++.+|...|++|.+-+.|  .++++|++|.+|+|||..+..++.+++   .|.+.+..+
T Consensus       161 LDrTVKVWslgs----~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe---GHt~Nvs~v  233 (794)
T KOG0276|consen  161 LDRTVKVWSLGS----PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE---GHTNNVSFV  233 (794)
T ss_pred             ccccEEEEEcCC----CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh---cccccceEE
Confidence            899999999864    44568888999999999997755  699999999999999999999988877   466778889


Q ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648          235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      .|+|.=-.++|||+||+++||+..+-+...++.---..+.|++-.+.++.++.|..
T Consensus       234 ~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~D  289 (794)
T KOG0276|consen  234 FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFD  289 (794)
T ss_pred             EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEecc
Confidence            99999999999999999999999887665554433345566665555554444443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.7e-32  Score=241.09  Aligned_cols=285  Identities=22%  Similarity=0.273  Sum_probs=239.1

Q ss_pred             ccceEecCCCcceEEEEe-CCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            2 EVGMSFRDYNGRISSMDF-HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~-s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      ++.+++.|.+++|..++| .|+.++||.++.-..+|+|+..+..|. .+.+|...|..+....++..+++++.   |.++
T Consensus       314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sK---D~sv  389 (775)
T KOG0319|consen  314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSK---DKSV  389 (775)
T ss_pred             EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecC---CceE
Confidence            456788899999999998 578899999999999999999988887 88999999999887677777777765   9999


Q ss_pred             EEEEccCCc----eEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceee---eee------ee--cCceeE
Q 021648           81 RLLSLHDNK----YLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQ---GLL------RV--QGRPAA  144 (309)
Q Consensus        81 ~~~d~~~~~----~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~---~~~------~~--~~~~~~  144 (309)
                      ++|-++++.    ++....||.+.|.+|+++-.+ .+|+|+|.|+++++|++...+..   ..+      +.  ...+++
T Consensus       390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V  469 (775)
T KOG0319|consen  390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV  469 (775)
T ss_pred             EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence            999885443    355667999999999997543 48999999999999998652211   111      11  123566


Q ss_pred             EECCCCcEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648          145 AYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  223 (309)
Q Consensus       145 ~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~  223 (309)
                      .+.|...+++++ .|.+.++|++.+..    ..-.+.||.-.+.+|.|+|..+.+++++.|++|+||.+.+..++.+++ 
T Consensus       470 aia~ndkLiAT~SqDktaKiW~le~~~----l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e-  544 (775)
T KOG0319|consen  470 AIAPNDKLIATGSQDKTAKIWDLEQLR----LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE-  544 (775)
T ss_pred             EecCCCceEEecccccceeeecccCce----EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec-
Confidence            777777777766 58999999987322    244678999999999999999999999999999999999999999987 


Q ss_pred             cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648          224 KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP  297 (309)
Q Consensus       224 ~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~  297 (309)
                        +|...|..+.|-.+|++|+|++.||-|++|++.+++++.++-.|+..|.+++-+|...+++||+.|.++=.|
T Consensus       545 --GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  545 --GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW  616 (775)
T ss_pred             --CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence              467889999999999999999999999999999999999999999999999999999999999999554333

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-32  Score=246.02  Aligned_cols=244  Identities=22%  Similarity=0.327  Sum_probs=192.5

Q ss_pred             eEec-CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC--------------------------------C--------
Q 021648            5 MSFR-DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--------------------------------A--------   43 (309)
Q Consensus         5 ~~~~-~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~--------------------------------~--------   43 (309)
                      +.+. +|+++|.++.||+||+||||||.|+.||||.+..                                .        
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3445 8999999999999999999999999999998754                                0        


Q ss_pred             --------------------ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEE
Q 021648           44 --------------------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVS  103 (309)
Q Consensus        44 --------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~  103 (309)
                                          ++++.+.+|...|..+.|+.++ +++++|   +|.+||||.+...+++++|. |.+-|+|
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSS---MDKTVRLWh~~~~~CL~~F~-HndfVTc  414 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSS---MDKTVRLWHPGRKECLKVFS-HNDFVTC  414 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEecc---ccccEEeecCCCcceeeEEe-cCCeeEE
Confidence                                0112255677777788887643 555554   69999999999999999998 9999999


Q ss_pred             EEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEE-ECCCCCcCCceEEEeCC
Q 021648          104 LSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF-DARKYEKGPFDIFSVGG  181 (309)
Q Consensus       104 v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-d~~~~~~~~~~~~~~~~  181 (309)
                      |+|+| |.++|+|||-|+.||||++...+                             |-.| |++              
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~-----------------------------Vv~W~Dl~--------------  451 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKK-----------------------------VVDWNDLR--------------  451 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCe-----------------------------eEeehhhh--------------
Confidence            99999 78899999999999999975433                             2222 121              


Q ss_pred             CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC-----CCCccceEEECCC-CCEEEEEcCCCcEEEE
Q 021648          182 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-----SRNSTLEASFSPE-GMFVISGSGDGSVYAW  255 (309)
Q Consensus       182 ~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~sp~-g~~l~s~s~Dg~i~vw  255 (309)
                        .-|+++||+|||++.+.|+.+|.+++|+....++.....+...     ....|+.+.|.|. -..++..+.|..|||+
T Consensus       452 --~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~  529 (712)
T KOG0283|consen  452 --DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIY  529 (712)
T ss_pred             --hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEE
Confidence              2378999999999999999999999999987776665544321     1236888888874 4578888999999999


Q ss_pred             ECCCCceEEEeecCCCC--CcEEEECCCeeEEEEccceEEEeeec
Q 021648          256 SVRSGKEVASWMSFDTE--PPVIKWTPGSLMFVTGSSELSFWIPD  298 (309)
Q Consensus       256 d~~~~~~~~~~~~~~~~--v~~l~~~p~~~~l~s~~~d~~~~~~~  298 (309)
                      |.++.+.+..|+++...  -....|++||+.+++|++|..+++|.
T Consensus       530 d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~  574 (712)
T KOG0283|consen  530 DGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK  574 (712)
T ss_pred             eccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence            99988888888865422  35677999999999999995555554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.3e-33  Score=235.76  Aligned_cols=243  Identities=18%  Similarity=0.342  Sum_probs=204.8

Q ss_pred             ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccc-cceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648            7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      +++|..+|+++.|++++.+++||+.||.||+|+.. ...++.+..|. ..|++++|+|+...++++|.   |++|++||.
T Consensus       134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~Sd---Dg~ikiWdf  209 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSD---DGTIKIWDF  209 (464)
T ss_pred             hhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecC---CCeEEEEec
Confidence            35999999999999999999999999999999975 44556666555 78999999998888888875   899999999


Q ss_pred             cCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCCc-EEEEEECCEEE
Q 021648           86 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGL-VFAVAFGGYIR  162 (309)
Q Consensus        86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~i~  162 (309)
                      ...++-+.+.||...|++++|+|....++|+|.|..|++||.+++.|+.++..+...  .+.+.+.+. +++++.|..++
T Consensus       210 ~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~k  289 (464)
T KOG0284|consen  210 RMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCK  289 (464)
T ss_pred             cCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEE
Confidence            988888889999999999999999999999999999999999999998887655433  345665554 55566799999


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  241 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~  241 (309)
                      ++|+|.++    +++...+|...+.+++++|- ..+|.+++.||.|..|....-+.+..  ....|...|++++|+|=|.
T Consensus       290 v~DiR~mk----El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~--i~~AHd~~iwsl~~hPlGh  363 (464)
T KOG0284|consen  290 VFDIRTMK----ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE--IPPAHDGEIWSLAYHPLGH  363 (464)
T ss_pred             EEehhHhH----HHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccC--CCcccccceeeeeccccce
Confidence            99999543    25566778889999999995 46778899999999999874444432  3456788999999999999


Q ss_pred             EEEEEcCCCcEEEEECCC
Q 021648          242 FVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       242 ~l~s~s~Dg~i~vwd~~~  259 (309)
                      .|++|+.|.+++.|....
T Consensus       364 il~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  364 ILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             eEeecCCCcceeeeccCC
Confidence            999999999999999754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.9e-33  Score=230.80  Aligned_cols=266  Identities=15%  Similarity=0.308  Sum_probs=206.2

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   89 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~   89 (309)
                      ..+.|.|+.++  ...++||..|+||+|||..+.+|.+.+.+|...|.++.+  +...++++|+   |.+|++||+++++
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSS---DsTvrvWDv~tge  268 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSS---DSTVRVWDVNTGE  268 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCC---CceEEEEeccCCc
Confidence            34678888776  468999999999999999999999999999988877766  4446666665   8999999999999


Q ss_pred             eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeee---eeecC--ceeEEECCCCcEEEEEECCEEEEE
Q 021648           90 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL---LRVQG--RPAAAYDDQGLVFAVAFGGYIRMF  164 (309)
Q Consensus        90 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~  164 (309)
                      +++++-+|.+.|..+.|+.  .+++|+|.|.++.+||+.+..-+..   +..+.  .+.+.| ++..+++++.|.+|++|
T Consensus       269 ~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf-d~kyIVsASgDRTikvW  345 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVW  345 (499)
T ss_pred             hhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc-ccceEEEecCCceEEEE
Confidence            9999999999999999974  6899999999999999987653222   11111  122223 33456666778999999


Q ss_pred             ECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEE
Q 021648          165 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  244 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~  244 (309)
                      ++.+.+-    +-++++|.-.+.|+.+  .|+++++|+.|.+|++||+..|.++..++.   |..-+.++.|  |.+.++
T Consensus       346 ~~st~ef----vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeG---HEeLvRciRF--d~krIV  414 (499)
T KOG0281|consen  346 STSTCEF----VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG---HEELVRCIRF--DNKRIV  414 (499)
T ss_pred             eccceee----ehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhc---hHHhhhheee--cCceee
Confidence            9865321    3456777777766655  689999999999999999999998887664   4455667788  678999


Q ss_pred             EEcCCCcEEEEECCCCc---------eEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeec
Q 021648          245 SGSGDGSVYAWSVRSGK---------EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  298 (309)
Q Consensus       245 s~s~Dg~i~vwd~~~~~---------~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~  298 (309)
                      +|+.||+|+|||+.++.         ++.++..|++.|..+.|  |..++++.+-|  +-+|.-.
T Consensus       415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFL  477 (499)
T ss_pred             eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcC
Confidence            99999999999997754         24456678999988988  55556655544  6667543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=6.5e-32  Score=231.59  Aligned_cols=283  Identities=17%  Similarity=0.295  Sum_probs=212.9

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc----eeeeee-ccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT----CLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      .+|++|+..|+++++.|.|.+|+|||.|.+|++||+..+.    ..+.+. .....+..+.+++++..+++.+.   ..+
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg---~aq  237 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG---SAQ  237 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec---Ccc
Confidence            3678999999999999999999999999999999997432    223332 23446889999999999888763   567


Q ss_pred             eEEEEccCCc---------eE---EEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeee-eeee---cC--
Q 021648           80 LRLLSLHDNK---------YL---RYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQG-LLRV---QG--  140 (309)
Q Consensus        80 i~~~d~~~~~---------~~---~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~-~~~~---~~--  140 (309)
                      .+|+|-...+         ++   ..-+||...+++.+|+|+.+ .|+|++.||++|+||....+... ++..   .+  
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR  317 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence            8999865433         22   33468999999999999765 89999999999999986544321 2211   11  


Q ss_pred             --ceeEEECCCCcEEEEE-ECCEEEEEECCCCCc-CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC-
Q 021648          141 --RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEK-GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-  215 (309)
Q Consensus       141 --~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~-  215 (309)
                        ...+.+++++..+|++ .||.|.+|+.++... +.+.+...+....++++|+||+||++|++.+.|+++++||++.. 
T Consensus       318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence              2356788888766654 799999999765433 33334444444458999999999999999999999999999763 


Q ss_pred             eEeEEeeecCCCCCccceEEECCCCCEEEEEcC------CCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEcc
Q 021648          216 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~------Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~  289 (309)
                      +.+.....-+ ....-..++|||+.+.|+||..      .|++.+||..+.+.+.++.--+..|..+.|||.-+++..|+
T Consensus       398 kpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs  476 (641)
T KOG0772|consen  398 KPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS  476 (641)
T ss_pred             cchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence            3333322111 1123457899999999999965      46899999999988888765577888999999987777777


Q ss_pred             ce
Q 021648          290 SE  291 (309)
Q Consensus       290 ~d  291 (309)
                      .|
T Consensus       477 gd  478 (641)
T KOG0772|consen  477 GD  478 (641)
T ss_pred             CC
Confidence            66

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.2e-30  Score=236.71  Aligned_cols=231  Identities=15%  Similarity=0.190  Sum_probs=177.3

Q ss_pred             EecCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCC-------ceeeeeeccccceeEEEEecCCC-EEEEEcCCCC
Q 021648            6 SFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGW   76 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~   76 (309)
                      .+.+|++.|.+++|+| ++++|+|||.|++|+|||+.++       +++..+.+|...|..++|+|++. .+++++   .
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs---~  146 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG---A  146 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe---C
Confidence            5789999999999999 8899999999999999999764       35678889999999999999864 555554   4


Q ss_pred             CceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEE
Q 021648           77 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA  156 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (309)
                      |++|++||+++++.+..+.+|.+.|.+++|+|+++.|++++.|++|++||+++++....+..+.                
T Consensus       147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~----------------  210 (493)
T PTZ00421        147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA----------------  210 (493)
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC----------------
Confidence            8999999999999999999999999999999999999999999999999998776433221100                


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe----CCCcEEEEECCCCe-EeEEeeecCCCCCcc
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT----MEGHIHVLDSFRGT-LLSTYNVKPVSRNST  231 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~----~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~  231 (309)
                                                ......+.+.+++..+++.+    .|+.|++||+++.. .+......  ....+
T Consensus       211 --------------------------~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d--~~~~~  262 (493)
T PTZ00421        211 --------------------------SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD--QSSAL  262 (493)
T ss_pred             --------------------------CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC--CCCce
Confidence                                      00112345666666666544    47899999987643 22222211  12234


Q ss_pred             ceEEECCCCCEEEEEc-CCCcEEEEECCCCceEEEeec-CCCCCcEEEECCCee
Q 021648          232 LEASFSPEGMFVISGS-GDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPGSL  283 (309)
Q Consensus       232 ~~~~~sp~g~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~~p~~~  283 (309)
                      ....|+|++++|++++ .|+.|++||+.+++.+..... ++.+...++|.|...
T Consensus       263 ~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~  316 (493)
T PTZ00421        263 FIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS  316 (493)
T ss_pred             EEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc
Confidence            4567999999999988 599999999999887665433 445677888888543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.2e-32  Score=219.56  Aligned_cols=282  Identities=19%  Similarity=0.332  Sum_probs=230.2

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee--------ccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--------SKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      +.+.-+.|..|+|||++|+|||.||.|-+||..+|+..+.+.        -+..+|.+++|+.|.+.+++++.   |+.|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq---DGkI  287 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ---DGKI  287 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc---CCcE
Confidence            345668899999999999999999999999999998766543        34567999999999988887764   8899


Q ss_pred             EEEEccCCceEEEee-ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCC-cEEEEE
Q 021648           81 RLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVA  156 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~  156 (309)
                      ++|-+++|.+++.|. .|...|+++.|+.|+..++++|.|.++|+--++++++...++.+.  .+.+.+.+++ .+++++
T Consensus       288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS  367 (508)
T KOG0275|consen  288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISAS  367 (508)
T ss_pred             EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence            999999999999997 899999999999999999999999999999999999887765432  2334555554 688888


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  235 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      .||+|++|+..+.+  ....+...+...+++.+..-| +-..++.+....+|+|.++ .|..+.++....-..+...+++
T Consensus       368 sDgtvkvW~~Ktte--C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~  444 (508)
T KOG0275|consen  368 SDGTVKVWHGKTTE--CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAI  444 (508)
T ss_pred             CCccEEEecCcchh--hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEE
Confidence            99999999976432  222233334445677776655 3466778888889999887 4777777754333345677889


Q ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceE--EEee
Q 021648          236 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSEL--SFWI  296 (309)
Q Consensus       236 ~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~--~~~~  296 (309)
                      .||.|.++++.++|+.++.+.+.+|+...+++-|...+..++-||-.+++++.++|+  ++|-
T Consensus       445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            999999999999999999999999999999999999999999999999999999994  4553

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.3e-31  Score=229.38  Aligned_cols=265  Identities=20%  Similarity=0.272  Sum_probs=220.4

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      .+.|.--+-+|.+..|-+..+++++||.|..||||+..+++.+++|+.|..-+++++.+|.-.+++++|.   |.+|++|
T Consensus        48 VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSD---Dm~iKlW  124 (794)
T KOG0276|consen   48 VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSD---DMTIKLW  124 (794)
T ss_pred             eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCC---ccEEEEe
Confidence            4566666778999999999999999999999999999999999999999999999999999999999886   8999999


Q ss_pred             EccCC-ceEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeec--CceeEEECCCC---cEEEEE
Q 021648           84 SLHDN-KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQG---LVFAVA  156 (309)
Q Consensus        84 d~~~~-~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~  156 (309)
                      |.+.+ .+.++|.||..-|.+++|+| |.+.|+|+|-|+||++|.+.++.+..++..+  +.++..|-+.+   .+++++
T Consensus       125 ~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga  204 (794)
T KOG0276|consen  125 DWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA  204 (794)
T ss_pred             eccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC
Confidence            99875 57889999999999999999 6789999999999999999888887777543  44566665443   788888


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      .|.+|++||.++..    -+.++.||...++.++|.|.-..+++|+.||+|+||...+-.+..++..   .-.++++++-
T Consensus       205 DD~tiKvWDyQtk~----CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~---gleRvW~I~~  277 (794)
T KOG0276|consen  205 DDLTIKVWDYQTKS----CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY---GLERVWCIAA  277 (794)
T ss_pred             CCceEEEeecchHH----HHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc---CCceEEEEee
Confidence            89999999986522    3567889999999999999999999999999999999888777776654   3367899999


Q ss_pred             CCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          237 SPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       237 sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      .+.++.++.|.+.|.|.+ .+..            ..+.+.+.++|+.+-+.+++
T Consensus       278 ~k~~~~i~vG~Deg~i~v-~lgr------------eeP~vsMd~~gKIiwa~~~e  319 (794)
T KOG0276|consen  278 HKGDGKIAVGFDEGSVTV-KLGR------------EEPAVSMDSNGKIIWAVHSE  319 (794)
T ss_pred             cCCCCeEEEeccCCcEEE-EccC------------CCCceeecCCccEEEEcCce
Confidence            999999999988876544 3333            33455556666666665554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4e-32  Score=223.01  Aligned_cols=244  Identities=19%  Similarity=0.277  Sum_probs=195.9

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ..+.+.||+|+|.|+.|+.  +.++|||.|.||+|||+++|+++.++.+|-..|..+.|+.  .+++++|.   |.++++
T Consensus       229 c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSk---DrsiaV  301 (499)
T KOG0281|consen  229 CLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSK---DRSIAV  301 (499)
T ss_pred             HHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecC---CceeEE
Confidence            4567889999999999875  5999999999999999999999999999988888888764  47888775   899999


Q ss_pred             EEccCCc---eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCC-cEEEEEEC
Q 021648           83 LSLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG-LVFAVAFG  158 (309)
Q Consensus        83 ~d~~~~~---~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  158 (309)
                      ||+....   ..+++.||.+.|+.|.|.  .++++|+|.|++|++|++.+..++.++..+..-.++.+..+ .++++++|
T Consensus       302 Wdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSD  379 (499)
T KOG0281|consen  302 WDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSD  379 (499)
T ss_pred             EeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCC
Confidence            9997643   467789999999999986  46999999999999999999999888876655555666555 45556679


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEe----e--ecCCCCCccc
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY----N--VKPVSRNSTL  232 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~----~--~~~~~~~~~~  232 (309)
                      ++|++||+....-    +--++||..-+.++.|  |.+.+++|+.||+|++||+..+......    .  .-..|.+.+.
T Consensus       380 ntIRlwdi~~G~c----LRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVF  453 (499)
T KOG0281|consen  380 NTIRLWDIECGAC----LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF  453 (499)
T ss_pred             ceEEEEeccccHH----HHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeE
Confidence            9999999875431    2235577777888888  6788999999999999998765432111    0  1123456777


Q ss_pred             eEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 021648          233 EASFSPEGMFVISGSGDGSVYAWSVRSGKEV  263 (309)
Q Consensus       233 ~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~  263 (309)
                      .+.|  |...+++++.|.+|-|||..++.+-
T Consensus       454 rLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  454 RLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             EEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence            7777  7789999999999999999876543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.98  E-value=2.4e-30  Score=205.65  Aligned_cols=278  Identities=17%  Similarity=0.210  Sum_probs=220.4

Q ss_pred             EecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648            6 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      -++||+.+++.|+++.+|.+|.|++.|.+..+|=...|+.+-++.+|...|.++....+.+.+++++.   |+++++||+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSA---D~t~kLWDv   81 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSA---DQTAKLWDV   81 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccc---cceeEEEEc
Confidence            36799999999999999999999999999999988899999999999999999999999999999875   999999999


Q ss_pred             cCCceEEEeeecccCEEEEEecCCCCeEEEecC-----CCcEEEeeCCC-------ceeeeeeeecC--ceeEEECCCC-
Q 021648           86 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-----DRTVLLWDQRA-------EKCQGLLRVQG--RPAAAYDDQG-  150 (309)
Q Consensus        86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-----Dg~v~~Wd~~~-------~~~~~~~~~~~--~~~~~~~~~~-  150 (309)
                      ++|+++..++ -..+|+.+.|++++++++.+..     -+.|.++|++.       ..+...+..+.  ...+...+.+ 
T Consensus        82 ~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~  160 (327)
T KOG0643|consen   82 ETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE  160 (327)
T ss_pred             CCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence            9999988776 5678999999999987666653     35788999873       33333333332  2234555555 


Q ss_pred             cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCc
Q 021648          151 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  230 (309)
Q Consensus       151 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  230 (309)
                      .++++..+|.|..||+++...   -+.....|...++.+.+|||..++++++.|.+-++||..+-+++++|..    ..+
T Consensus       161 ~ii~Ghe~G~is~~da~~g~~---~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t----e~P  233 (327)
T KOG0643|consen  161 TIIAGHEDGSISIYDARTGKE---LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT----ERP  233 (327)
T ss_pred             EEEEecCCCcEEEEEcccCce---eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee----ccc
Confidence            466666789999999987432   2233344566899999999999999999999999999999999998874    356


Q ss_pred             cceEEECCCCCEEEEEcCCCcE--EEEECCCC------------ceEEEeecCCCCCcEEEECCCeeEEEEccceEEE
Q 021648          231 TLEASFSPEGMFVISGSGDGSV--YAWSVRSG------------KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF  294 (309)
Q Consensus       231 ~~~~~~sp~g~~l~s~s~Dg~i--~vwd~~~~------------~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~  294 (309)
                      +.+.+++|-..+++.|+.-...  .-=+.+.+            +.+...++|=++|++|+|||+|+..++|++|.++
T Consensus       234 vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V  311 (327)
T KOG0643|consen  234 VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV  311 (327)
T ss_pred             ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceE
Confidence            7788999988888887654322  11112222            2345567899999999999999999999999443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=5.8e-30  Score=206.48  Aligned_cols=246  Identities=16%  Similarity=0.277  Sum_probs=196.1

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      -+++++|+++|..+.|.+|++.++++|.|++|+.||+++|++++.+.+|..-|..++-..-+..++.+.  ..|+++|+|
T Consensus        83 ~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sg--sdD~t~kl~  160 (338)
T KOG0265|consen   83 FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSG--SDDGTLKLW  160 (338)
T ss_pred             eeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEec--CCCceEEEE
Confidence            357789999999999999999999999999999999999999999999988888777555555555543  239999999


Q ss_pred             EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCC-cEEEEEECCE
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQG-LVFAVAFGGY  160 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~  160 (309)
                      |+.+.+.++++. -+..++++.|..++..+++|+-|+.|++||++.+....++.....+  ....++.+ .+++-+.|.+
T Consensus       161 D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t  239 (338)
T KOG0265|consen  161 DIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT  239 (338)
T ss_pred             eecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce
Confidence            999888777764 4567999999999999999999999999999988877766544333  23444444 5666677999


Q ss_pred             EEEEECCCCCcCC--ceEEEeCCCCC--CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648          161 IRMFDARKYEKGP--FDIFSVGGDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       161 i~~~d~~~~~~~~--~~~~~~~~~~~--~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      +++||+|-+....  ..++.-+.+..  ....++.||+++.+.+|+.|+.+++||......+..+   +.|.+.|.++.|
T Consensus       240 vrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl---pGh~gsvn~~~F  316 (338)
T KOG0265|consen  240 VRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL---PGHYGSVNEVDF  316 (338)
T ss_pred             EEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc---CCcceeEEEeee
Confidence            9999998765322  33333222322  3345688999999999999999999998765555433   457788999999


Q ss_pred             CCCCCEEEEEcCCCcEEEE
Q 021648          237 SPEGMFVISGSGDGSVYAW  255 (309)
Q Consensus       237 sp~g~~l~s~s~Dg~i~vw  255 (309)
                      +|...+|.+++.|.+|++=
T Consensus       317 hp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  317 HPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             cCCCcEEEEeccCceeEee
Confidence            9999999999999999873

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.3e-30  Score=200.94  Aligned_cols=244  Identities=19%  Similarity=0.298  Sum_probs=203.4

Q ss_pred             eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEe
Q 021648           46 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW  125 (309)
Q Consensus        46 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~W  125 (309)
                      .+.+..++.+|..+-|..+|++.+++..   |.++|+|+...+..++++.||-.+|..++.+.|+..|++|+.|+.+.+|
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGs---drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGS---DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW   86 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCC---CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence            4566778888999999999999998743   9999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceeeeeeeecC--ceeEEECCCC-cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe
Q 021648          126 DQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT  202 (309)
Q Consensus       126 d~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~  202 (309)
                      |..+++....++.+.  .+...|.+.. .+++++.|..+++||.|.....|.+++..  ....+.++..  .+..+++|+
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde--a~D~V~Si~v--~~heIvaGS  162 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE--AKDGVSSIDV--AEHEIVAGS  162 (307)
T ss_pred             EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh--hcCceeEEEe--cccEEEeec
Confidence            999999888776543  3455666554 45556689999999998766555554432  3345666666  478899999


Q ss_pred             CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCC--CcEEEECC
Q 021648          203 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE--PPVIKWTP  280 (309)
Q Consensus       203 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~--v~~l~~~p  280 (309)
                      .||+++.||++.|.+...+-     ..++.+++|+|||+..++++.|+++++.|-.+|+.++..++|...  -...+++.
T Consensus       163 ~DGtvRtydiR~G~l~sDy~-----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q  237 (307)
T KOG0316|consen  163 VDGTVRTYDIRKGTLSSDYF-----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ  237 (307)
T ss_pred             cCCcEEEEEeecceeehhhc-----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc
Confidence            99999999999998876543     356788999999999999999999999999999999999998754  34466788


Q ss_pred             CeeEEEEccceEEEeeecCCC
Q 021648          281 GSLMFVTGSSELSFWIPDLSK  301 (309)
Q Consensus       281 ~~~~l~s~~~d~~~~~~~~~~  301 (309)
                      ....+++|++|.+++.|+|.+
T Consensus       238 sdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  238 SDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             cceeEEeccCCceEEEEEecc
Confidence            889999999998888777744

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.7e-30  Score=232.28  Aligned_cols=248  Identities=21%  Similarity=0.361  Sum_probs=205.2

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ++-.|.+|.|+|..|.|+|++.+++|||.|.+|++|+..+.+|+.++.+|-.-|..+.|++.-..++++|.   |.+||+
T Consensus        43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASD---DQTIrI  119 (1202)
T KOG0292|consen   43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASD---DQTIRI  119 (1202)
T ss_pred             HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccC---CCeEEE
Confidence            45578999999999999999999999999999999999999999999999988999999998889999886   899999


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee------------------ee--------
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG------------------LL--------  136 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~------------------~~--------  136 (309)
                      |+..+++++.++.||.-.|.|..|+|....++|+|-|.+||+||+..-+...                  .+        
T Consensus       120 WNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK  199 (1202)
T KOG0292|consen  120 WNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK  199 (1202)
T ss_pred             EeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence            9999999999999999999999999999999999999999999974211000                  00        


Q ss_pred             -ee----cCceeEEECCC-CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEE
Q 021648          137 -RV----QGRPAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL  210 (309)
Q Consensus       137 -~~----~~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~  210 (309)
                       .+    .+.+-+++.|. ..+++++.|..|++|....  .....+-+..+|.+.|.++-|.|....+++.+.|+.|+||
T Consensus       200 ~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne--tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw  277 (1202)
T KOG0292|consen  200 HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE--TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW  277 (1202)
T ss_pred             eeecccccccceEEecCCcceEEecCCcceeeEEEecc--ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence             00    11223455554 3456666788999997642  3344556677899999999999999999999999999999


Q ss_pred             ECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          211 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       211 d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      |+.+.+.+.++..   ...+.|.++-+|..+.+|+|- |+.+.||.++.
T Consensus       278 Dm~kRt~v~tfrr---endRFW~laahP~lNLfAAgH-DsGm~VFkleR  322 (1202)
T KOG0292|consen  278 DMTKRTSVQTFRR---ENDRFWILAAHPELNLFAAGH-DSGMIVFKLER  322 (1202)
T ss_pred             ecccccceeeeec---cCCeEEEEEecCCcceeeeec-CCceEEEEEcc
Confidence            9999999988863   235678899999999887775 55577777764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=8.3e-29  Score=209.98  Aligned_cols=244  Identities=27%  Similarity=0.454  Sum_probs=202.5

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      +...+.+|...+..+.|+|+++++++++.|+.+++||+.+++.+..+..|...+..+++.+++..++++.   .|+.+++
T Consensus        43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~~  119 (289)
T cd00200          43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKV  119 (289)
T ss_pred             cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec---CCCeEEE
Confidence            3467788999999999999999999999999999999998888888888888899999999876666654   3789999


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCC-cEEEEEECC
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVAFGG  159 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~  159 (309)
                      ||+.+++.+..+..|...+.++.|+|+++++++++.|+.+++||+++++....+....  .....+.+++ .+++++.++
T Consensus       120 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  199 (289)
T cd00200         120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG  199 (289)
T ss_pred             EECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC
Confidence            9999888888999999999999999998889888889999999998777665554332  2345666666 555666699


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      .+++||++..+.    ......+...+.+++++|++.++++++.+|.+++||..++.....+.   .+...+..++|+|+
T Consensus       200 ~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~~  272 (289)
T cd00200         200 TIKLWDLSTGKC----LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS---GHTNSVTSLAWSPD  272 (289)
T ss_pred             cEEEEECCCCce----ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc---ccCCcEEEEEECCC
Confidence            999999875321    22232445578999999999999888889999999998888777665   34567889999999


Q ss_pred             CCEEEEEcCCCcEEEEE
Q 021648          240 GMFVISGSGDGSVYAWS  256 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd  256 (309)
                      ++++++++.|+.+++|+
T Consensus       273 ~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         273 GKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCEEEEecCCCeEEecC
Confidence            99999999999999996

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=9.5e-30  Score=231.31  Aligned_cols=251  Identities=21%  Similarity=0.370  Sum_probs=201.9

Q ss_pred             ceE-ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            4 GMS-FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         4 ~~~-~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      +.+ |.||.+.|.+++|..-+.+|++||.|.++|+||..+|.|.+.+.+|...+.++...  +..++.+   +.|.+|++
T Consensus       241 i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sg---s~D~tVkV  315 (537)
T KOG0274|consen  241 ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSG---SRDNTVKV  315 (537)
T ss_pred             EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeec---cCCceEEE
Confidence            444 89999999999999878899999999999999999999999999999877766543  3344443   35999999


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCCcEEEEEECCE
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVAFGGY  160 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  160 (309)
                      |+++++..+..+.+|.+.|+++...  +..+++|+.|++|++||+++.++...+..+...  ...++....++.++.|+.
T Consensus       316 W~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~  393 (537)
T KOG0274|consen  316 WDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTT  393 (537)
T ss_pred             EeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccc
Confidence            9999999999999999999999987  679999999999999999999998887654322  223333377888889999


Q ss_pred             EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC
Q 021648          161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  240 (309)
Q Consensus       161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g  240 (309)
                      |++||+++..   .-+..+.++..-+..  +...++.|++++.|++|++||...++++..+...  +...+..+++.  -
T Consensus       394 IkvWdl~~~~---~c~~tl~~h~~~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~--~  464 (537)
T KOG0274|consen  394 IKVWDLRTKR---KCIHTLQGHTSLVSS--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR--HVGGVSALALG--K  464 (537)
T ss_pred             eEeecCCchh---hhhhhhcCCcccccc--cccccceeEeccccccEEEeecccCceeeeeccC--CcccEEEeecC--c
Confidence            9999998753   123455555554433  3457899999999999999999999999887642  33455555554  4


Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEeecCC
Q 021648          241 MFVISGSGDGSVYAWSVRSGKEVASWMSFD  270 (309)
Q Consensus       241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  270 (309)
                      ..+++++.|+++++||+++++....+..+.
T Consensus       465 ~~il~s~~~~~~~l~dl~~~~~~~~l~~~~  494 (537)
T KOG0274|consen  465 EEILCSSDDGSVKLWDLRSGTLIRTLLSTD  494 (537)
T ss_pred             ceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence            788999999999999999999888764433

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.2e-29  Score=206.27  Aligned_cols=285  Identities=19%  Similarity=0.307  Sum_probs=211.5

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc-----eee-eeeccccceeEEEEecCCCEEEEEcCCCCC
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----CLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWD   77 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~-----~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d   77 (309)
                      ...|++|.++|++++|+.||++|||++.|++|||||+..-+     |++ +++..  ..+.+.|+||-..++....+  .
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d--hpT~V~FapDc~s~vv~~~~--g  154 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD--HPTRVVFAPDCKSVVVSVKR--G  154 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC--CceEEEECCCcceEEEEEcc--C
Confidence            35689999999999999999999999999999999997532     221 22221  35788999999877766654  3


Q ss_pred             ceeEEEEccC---Cce---------EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--cee
Q 021648           78 ESLRLLSLHD---NKY---------LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPA  143 (309)
Q Consensus        78 ~~i~~~d~~~---~~~---------~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~  143 (309)
                      .++++|-+..   |..         +..-+.|+..+-.+.....+++++|++.|-+|.+|+++ ++....+....  ...
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~  233 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD  233 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence            5899997643   222         12234577788888888888999999999999999998 66555554322  123


Q ss_pred             EEECCCCcEEE-EEECCEEEEEECCCCCcCCc----eEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC---
Q 021648          144 AAYDDQGLVFA-VAFGGYIRMFDARKYEKGPF----DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG---  215 (309)
Q Consensus       144 ~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~----~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~---  215 (309)
                      +..+|+|++++ +++.-.+++|++--.+.+.+    .++.+.||.+.|..++|||+.+.+++.+-||++++||..-.   
T Consensus       234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA  313 (420)
T ss_pred             eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence            56677776555 55778899999754444333    36788999999999999999999999999999999997421   


Q ss_pred             ----eEeEEeeec-CCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee-cCCCCCcEEEECCCeeEEEEcc
Q 021648          216 ----TLLSTYNVK-PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM-SFDTEPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       216 ----~~~~~~~~~-~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~~l~s~~  289 (309)
                          ..+.++... .........++.+|+|+-||... ...++++..++++...++. .|++.|++|+|+|+|+++++.+
T Consensus       314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG  392 (420)
T KOG2096|consen  314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG  392 (420)
T ss_pred             CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence                222222110 11223445899999999887764 4569999999988776653 5899999999999999999987


Q ss_pred             ce-EEE
Q 021648          290 SE-LSF  294 (309)
Q Consensus       290 ~d-~~~  294 (309)
                      .- +++
T Consensus       393 dr~vrv  398 (420)
T KOG2096|consen  393 DRYVRV  398 (420)
T ss_pred             ceeeee
Confidence            63 444

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=2.3e-29  Score=228.85  Aligned_cols=271  Identities=20%  Similarity=0.306  Sum_probs=220.9

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeee-eeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      |...+.+..|.  +.++.+++.|+++++||..++..+.. +.+|...|..+++..-+..+++++.   |.++|+||..+|
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~---D~t~rvWd~~sg  281 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGST---DKTERVWDCSTG  281 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEec---CCcEEeEecCCC
Confidence            55678888888  56899999999999999999999888 9999999999999876667887765   999999999999


Q ss_pred             ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce-eEEECCCCcEEEEEECCEEEEEECC
Q 021648           89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVAFGGYIRMFDAR  167 (309)
Q Consensus        89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~  167 (309)
                      +++.++.||.+.|.++...+  ..+++||.|.+|++|++.++++..++..+..+ ....-....+++++.|++|++||++
T Consensus       282 ~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~  359 (537)
T KOG0274|consen  282 ECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPR  359 (537)
T ss_pred             cEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhh
Confidence            99999999999999987754  67889999999999999999998888743322 2333346778888899999999998


Q ss_pred             CCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC-eEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648          168 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISG  246 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~  246 (309)
                      .++    -+..+.+|...|.++.+.+. ..+.+|+.|++|++||+.+. +++.++..   |..-+.  .+...+++|+++
T Consensus       360 ~~~----cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~---h~~~v~--~l~~~~~~Lvs~  429 (537)
T KOG0274|consen  360 TGK----CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG---HTSLVS--SLLLRDNFLVSS  429 (537)
T ss_pred             hce----eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC---Cccccc--ccccccceeEec
Confidence            543    25577888888988877665 88999999999999999998 77776653   333332  345588999999


Q ss_pred             cCCCcEEEEECCCCceEEEeec-CCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          247 SGDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       247 s~Dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      +.|++|++||..+++++.++.+ |.+.+..+++.  ...+++++.|.++-.|++
T Consensus       430 ~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl  481 (537)
T KOG0274|consen  430 SADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDL  481 (537)
T ss_pred             cccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEec
Confidence            9999999999999999999988 66788888876  556666666644444444

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=6.7e-30  Score=210.57  Aligned_cols=238  Identities=15%  Similarity=0.225  Sum_probs=200.7

Q ss_pred             eeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeC
Q 021648           48 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ  127 (309)
Q Consensus        48 ~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~  127 (309)
                      .+.+|..+|.++++-|..+.+++++.   |+++++||+++|+...++.||...|+.|++++-.-++.+++.|+.|++||+
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~---DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSA---DRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCC---CceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            46789999999999999888887764   999999999999999999999999999999998889999999999999999


Q ss_pred             CCceeeeeeeec--CceeEEECC-CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC
Q 021648          128 RAEKCQGLLRVQ--GRPAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME  204 (309)
Q Consensus       128 ~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d  204 (309)
                      +.++.+.....+  +..+....| ...+++++.|..+|+||+|.    +..+..+.||..+|..|.+.|-...+++++.|
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt----r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D  298 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT----RASVHVLSGHTNPVASVMCQPTDPQVITGSHD  298 (460)
T ss_pred             hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc----cceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence            988776554322  222233333 45677788899999999997    34578889999999999999888889999999


Q ss_pred             CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeE
Q 021648          205 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLM  284 (309)
Q Consensus       205 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~  284 (309)
                      ++|++||++.|+-..++.   .|...+.+++.+|.-..+|++|.|. |+-|++..+..+..+.+|++.+++++-+.|+-+
T Consensus       299 ~tvrlWDl~agkt~~tlt---~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~  374 (460)
T KOG0285|consen  299 STVRLWDLRAGKTMITLT---HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVL  374 (460)
T ss_pred             ceEEEeeeccCceeEeee---cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCceE
Confidence            999999999988777665   3567788999999999999999987 999999999999999999999999998888766


Q ss_pred             EEEccce--EEEeee
Q 021648          285 FVTGSSE--LSFWIP  297 (309)
Q Consensus       285 l~s~~~d--~~~~~~  297 (309)
                      + +|+..  +-+|.|
T Consensus       375 ~-~G~dng~~~fwdw  388 (460)
T KOG0285|consen  375 V-SGGDNGSIMFWDW  388 (460)
T ss_pred             E-EcCCceEEEEEec
Confidence            5 44444  455555

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=8.5e-29  Score=225.91  Aligned_cols=238  Identities=13%  Similarity=0.223  Sum_probs=175.9

Q ss_pred             cceEecCCCcceEEEEeCCC-CCEEEEeeCCCcEEEEEcCCCc--------eeeeeeccccceeEEEEecCCCEEEEEcC
Q 021648            3 VGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAAT--------CLKTINSKKYGVDLVCFTSHPTTVIYSSK   73 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~-~~~l~t~s~D~~v~iWd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~   73 (309)
                      .+..|.+|.++|.+++|+|+ +++|||||.|++|+|||+.++.        ++..+.+|...|..++|+|++..+++++ 
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg-  144 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS-  144 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE-
Confidence            34678999999999999996 7899999999999999997542        3346788888999999999988765432 


Q ss_pred             CCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEE
Q 021648           74 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF  153 (309)
Q Consensus        74 ~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (309)
                       +.|++|++||+.+++.+..+. |...|.+++|+|+|+.|++++.|++|++||+++++....+..+.         +...
T Consensus       145 -S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~---------g~~~  213 (568)
T PTZ00420        145 -GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD---------GGKN  213 (568)
T ss_pred             -eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc---------CCce
Confidence             348999999999988777775 67889999999999999999999999999998876543332110         0000


Q ss_pred             EEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC----cEEEEECCC-CeEeEEeeecCCCC
Q 021648          154 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG----HIHVLDSFR-GTLLSTYNVKPVSR  228 (309)
Q Consensus       154 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg----~v~i~d~~~-~~~~~~~~~~~~~~  228 (309)
                             .                      ..+....|++++.++++++.|+    +|+|||++. +..+....... +.
T Consensus       214 -------s----------------------~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~  263 (568)
T PTZ00420        214 -------T----------------------KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-AS  263 (568)
T ss_pred             -------e----------------------EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-Cc
Confidence                   0                      0012235678999999888774    799999985 55555443321 22


Q ss_pred             CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee--cCCCCCcEEEECCCee
Q 021648          229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTPGSL  283 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~~p~~~  283 (309)
                      +.+.-.-..++|.++++|+.|++|++|++..+. +..+.  .+..+...++|.|...
T Consensus       264 ~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        264 APLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             cceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence            222222335569999999999999999997763 33332  2456778899999754

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.6e-30  Score=204.16  Aligned_cols=239  Identities=19%  Similarity=0.309  Sum_probs=189.3

Q ss_pred             CcceEEEEeCCCC-CEEEEeeCCCcEEEEEcC-CCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648           11 NGRISSMDFHKSS-SYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus        11 ~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      ++.+..++|+++. +.+++++.||++||||.. ...+++.++.|+..|..+.+.+-..+.+..+  +||++||+|+....
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts--SWD~TiKLW~~~r~  137 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS--SWDGTIKLWDPNRP  137 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEee--ccCCceEeecCCCC
Confidence            5678899999864 688999999999999964 3457889999999999999988766665554  58999999999999


Q ss_pred             ceEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEE--EC-CCC-cEEEEEECCEEEE
Q 021648           89 KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA--YD-DQG-LVFAVAFGGYIRM  163 (309)
Q Consensus        89 ~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~--~~-~~~-~~~~~~~~~~i~~  163 (309)
                      +.+.++.||...|....|+| ..+.|+++|.|+++++||++.......+..+.....+  .. .+. .+.+++.|+.||.
T Consensus       138 ~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~  217 (311)
T KOG0277|consen  138 NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG  217 (311)
T ss_pred             cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEE
Confidence            99999999999999999999 4789999999999999998865333334433311121  21 233 4455567999999


Q ss_pred             EECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCe-EeEEeeecCCCCCccceEEECC-CC
Q 021648          164 FDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSP-EG  240 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~sp-~g  240 (309)
                      ||+|+.+.+   ++.+.+|.-.|+.++|||.. ..|++++.|-+++|||..... .+.++.   .|..-+..+.||+ ++
T Consensus       218 wDir~~r~p---l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~---~HtEFv~g~Dws~~~~  291 (311)
T KOG0277|consen  218 WDIRNLRTP---LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD---HHTEFVCGLDWSLFDP  291 (311)
T ss_pred             Eehhhcccc---ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh---ccceEEeccccccccC
Confidence            999998764   55667788889999999975 678889999999999987543 333333   3555667788988 68


Q ss_pred             CEEEEEcCCCcEEEEEC
Q 021648          241 MFVISGSGDGSVYAWSV  257 (309)
Q Consensus       241 ~~l~s~s~Dg~i~vwd~  257 (309)
                      .++|+++.|+.++||+-
T Consensus       292 ~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  292 GQVASTGWDELLYVWNP  308 (311)
T ss_pred             ceeeecccccceeeecc
Confidence            89999999999999984

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.3e-30  Score=216.79  Aligned_cols=248  Identities=16%  Similarity=0.260  Sum_probs=192.5

Q ss_pred             CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecc-ccceeEEEEecCCCEEEEEcCCCCCce
Q 021648            1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      +++.+++.+|..+|..|.||||.++|++++.|..+++||+.+|.+.+.+... ...+.+++|.||+..+++++.   |++
T Consensus       259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~---dr~  335 (519)
T KOG0293|consen  259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP---DRT  335 (519)
T ss_pred             eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC---CCc
Confidence            4788999999999999999999999999999999999999999999888654 677899999999999998875   899


Q ss_pred             eEEEEccCCceEEEeeec-ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec-CceeEEECCCCcEEEEE-
Q 021648           80 LRLLSLHDNKYLRYFKGH-HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVA-  156 (309)
Q Consensus        80 i~~~d~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-  156 (309)
                      +..||+..+. ...-++- .-.|.++++.+||+++++...|..+++++.++......+... .......+.++.++.+. 
T Consensus       336 i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  336 IIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             EEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc
Confidence            9999987654 2333332 246899999999999999999999999998765444333322 23345556666666555 


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCe--EEEEc-cCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDAN--VVKFS-NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  233 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~v~~s-~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~  233 (309)
                      .+..+++||+.....    +....|+...-.  .-||. .+..++++|+.|++|+||+..+++++.++.   +|...|.+
T Consensus       415 ~~qei~LWDl~e~~l----v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls---GHs~~vNc  487 (519)
T KOG0293|consen  415 QDQEIHLWDLEENKL----VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS---GHSKTVNC  487 (519)
T ss_pred             ccCeeEEeecchhhH----HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec---CCcceeeE
Confidence            578999999863211    111222222111  12343 345899999999999999999999998876   46678889


Q ss_pred             EEECCC-CCEEEEEcCCCcEEEEECCC
Q 021648          234 ASFSPE-GMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       234 ~~~sp~-g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      |+|+|. -.++|+||+||+||||....
T Consensus       488 VswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  488 VSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             EecCCCCHHHhhccCCCCeEEEecCCc
Confidence            999995 58899999999999998864

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.6e-29  Score=202.59  Aligned_cols=260  Identities=18%  Similarity=0.296  Sum_probs=207.8

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC--EEEEEcCCCCCcee
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWDESL   80 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~s~~g~d~~i   80 (309)
                      ++..|.+|.++|++++.+  +.++||||.|-+|+|||..+..++..+-.|...++++.|.++-.  .+++++.   |+.|
T Consensus        35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd---DG~i  109 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD---DGHI  109 (362)
T ss_pred             ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC---CCcE
Confidence            467889999999999987  68999999999999999999999999999999999999988765  6777765   8899


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce-eEEECCCCcEEEEEECC
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVAFGG  159 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  159 (309)
                      .+|+...=+.++++++|++.|+.++++|.++.-+|.+.|+.++.||+-.++....+++...+ .+.+.+.+..++.+..+
T Consensus       110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~  189 (362)
T KOG0294|consen  110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN  189 (362)
T ss_pred             EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence            99999888999999999999999999999999999999999999999888877776665443 35677888888888889


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE--C
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF--S  237 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--s  237 (309)
                      .|-+|.+.+-.     ++..-.....+.++.| -++..+++|+.|+.|.+||..+...+..+.   .|.++|-.+.+  .
T Consensus       190 ~i~i~q~d~A~-----v~~~i~~~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~---AH~~RVK~i~~~~~  260 (362)
T KOG0294|consen  190 KIDIYQLDNAS-----VFREIENPKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFL---AHENRVKDIASYTN  260 (362)
T ss_pred             EEEEEecccHh-----Hhhhhhccccceeeee-cCCceEEEecCCceEEEeccCCCccceeee---cchhheeeeEEEec
Confidence            99999875421     1100000112334444 367788999999999999998877777766   35667766663  6


Q ss_pred             CCCCEEEEEcCCCcEEEEECCCC-----ceEEEeecCCCCCcEEE
Q 021648          238 PEGMFVISGSGDGSVYAWSVRSG-----KEVASWMSFDTEPPVIK  277 (309)
Q Consensus       238 p~g~~l~s~s~Dg~i~vwd~~~~-----~~~~~~~~~~~~v~~l~  277 (309)
                      |++.+|+|+|.||.|+|||++..     +.+..+.. +..++|+.
T Consensus       261 ~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~  304 (362)
T KOG0294|consen  261 PEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLR  304 (362)
T ss_pred             CCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceee
Confidence            78999999999999999999775     23444332 34556654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.3e-28  Score=238.53  Aligned_cols=244  Identities=14%  Similarity=0.197  Sum_probs=192.9

Q ss_pred             CCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEec-CCCEEEEEcCCCCCceeEEEEccC
Q 021648           10 YNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHD   87 (309)
Q Consensus        10 h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~d~~i~~~d~~~   87 (309)
                      +...|.+++|+| ++.+|||++.|++|+|||+.+++.+..+.+|...|..++|++ ++..+++++.   |++|++||+.+
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~---Dg~v~iWd~~~  607 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD---DGSVKLWSINQ  607 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC---CCEEEEEECCC
Confidence            356789999987 478999999999999999999999999999999999999997 6677777754   88999999999


Q ss_pred             CceEEEeeecccCEEEEEec-CCCCeEEEecCCCcEEEeeCCCce-eeeeeeecC--ceeEEECCCCcEEEEEECCEEEE
Q 021648           88 NKYLRYFKGHHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQG--RPAAAYDDQGLVFAVAFGGYIRM  163 (309)
Q Consensus        88 ~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~s~Dg~v~~Wd~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~  163 (309)
                      ++.+..+..| ..|.++.|+ ++++.|++|+.|+.|++||++..+ ....+..+.  ...+.+.+...+++++.|+.|++
T Consensus       608 ~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~iki  686 (793)
T PLN00181        608 GVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKL  686 (793)
T ss_pred             CcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEE
Confidence            9888888755 689999995 568999999999999999998754 222222221  22344555667777888999999


Q ss_pred             EECCCCCcC--CceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeec----------CCCCCcc
Q 021648          164 FDARKYEKG--PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----------PVSRNST  231 (309)
Q Consensus       164 ~d~~~~~~~--~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----------~~~~~~~  231 (309)
                      ||++.....  ...+..+.++...+..++++|++.++++++.|+.|++|+......+..+...          ..+...+
T Consensus       687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V  766 (793)
T PLN00181        687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI  766 (793)
T ss_pred             EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence            998753211  1234566777778899999999999999999999999998665444332211          1123457


Q ss_pred             ceEEECCCCCEEEEEcCCCcEEEEEC
Q 021648          232 LEASFSPEGMFVISGSGDGSVYAWSV  257 (309)
Q Consensus       232 ~~~~~sp~g~~l~s~s~Dg~i~vwd~  257 (309)
                      .+++|+|++..|++|+.||.|+||++
T Consensus       767 ~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        767 SSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEcCCCCeEEEecCCCcEEEEec
Confidence            88999999999999999999999996

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=7.2e-29  Score=208.97  Aligned_cols=275  Identities=20%  Similarity=0.283  Sum_probs=234.8

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648           12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL   91 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~   91 (309)
                      ..+.++...|..+.++||+.|.++.++|..+++.+.++.+|...+..+.++++...++.++.   |..|++|........
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSa---d~~i~vws~~~~s~~  296 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASA---DEIIRVWSVPLSSEP  296 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCC---cceEEeeccccccCc
Confidence            35778888888789999999999999999999999999999999999999999888888775   889999998777777


Q ss_pred             EEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec----CceeEEECCCCcEEEEEE-CCEEEEEEC
Q 021648           92 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVAF-GGYIRMFDA  166 (309)
Q Consensus        92 ~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~i~~~d~  166 (309)
                      .....|.++|+.+..+|.|.+|++++.||++-+-|++++.+.......    ...+..++|++.++..+. |+.+++||+
T Consensus       297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl  376 (506)
T KOG0289|consen  297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL  376 (506)
T ss_pred             cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence            778889999999999999999999999999999999999877655442    134578899999998774 899999998


Q ss_pred             CCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648          167 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  246 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~  246 (309)
                      ....    ..-...+|..+|..++|+.+|.+++++..|+.|++||+++.+...++....  ...+..++|.+.|++|+.+
T Consensus       377 ks~~----~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~--~~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  377 KSQT----NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE--KKEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             CCcc----ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc--cccceeEEEcCCCCeEEee
Confidence            7643    234455788899999999999999999999999999999988777766432  2357789999999999999


Q ss_pred             cCCCcEEEEECC--CCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEe
Q 021648          247 SGDGSVYAWSVR--SGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFW  295 (309)
Q Consensus       247 s~Dg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~  295 (309)
                      |.|=.|++++-.  .+.++..+..|++..+.+.|....+++++++.|..+-
T Consensus       451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~  501 (506)
T KOG0289|consen  451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILR  501 (506)
T ss_pred             cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheE
Confidence            888777776633  5667888889999999999999999999999985543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=2e-28  Score=202.26  Aligned_cols=296  Identities=14%  Similarity=0.224  Sum_probs=229.8

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      +++|..|+++|.+++.+|+.++++|||.|....||+..+|+.+.++.+|+..|.++.|+.++.+++++   ++++.|++|
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATG---dmsG~v~v~  133 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATG---DMSGKVLVF  133 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEec---CCCccEEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999988875   568999999


Q ss_pred             EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCCcEEEEE-ECCE
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVA-FGGY  160 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~  160 (309)
                      ...++.....+.+--+.+--+.|+|-...|+.|+.||.+-+|.+.++....++.-+..+  .-.+.|+|+.+.++ .|++
T Consensus       134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt  213 (399)
T KOG0296|consen  134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT  213 (399)
T ss_pred             EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence            99999988888877788888999999999999999999999998775444444333322  22455666655554 5899


Q ss_pred             EEEEECCCCCcCCceEEEeCCC-CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee-----cCCCC---Ccc
Q 021648          161 IRMFDARKYEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-----KPVSR---NST  231 (309)
Q Consensus       161 i~~~d~~~~~~~~~~~~~~~~~-~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~-----~~~~~---~~~  231 (309)
                      |++|++.+..  ++  +.+.+. .....++.++..+..+..+..++.+++-+..+|+.+...+.     .+.+.   .++
T Consensus       214 i~~Wn~ktg~--p~--~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv  289 (399)
T KOG0296|consen  214 IIVWNPKTGQ--PL--HKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV  289 (399)
T ss_pred             EEEEecCCCc--ee--EEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence            9999987653  22  222211 12346778888999999999999999999888888876552     11111   223


Q ss_pred             ceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeee-cCCCccccccC
Q 021648          232 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP-DLSKLGAYVGR  308 (309)
Q Consensus       232 ~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~-~~~~~~~~~~~  308 (309)
                      -.+.|+..-...|+|+.||+|-|||+...+ ++..-.|...|+.+.|-+ ...|.+++.+  ++.|.. -.+.+..|.||
T Consensus       290 e~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH  367 (399)
T KOG0296|consen  290 ESIPSSSKLPLAACGSVDGTIAIYDLAAST-LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGH  367 (399)
T ss_pred             hhcccccccchhhcccccceEEEEecccch-hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecC
Confidence            334455566788999999999999998764 444446888899999999 7777777777  555644 34455566666

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=9e-30  Score=206.41  Aligned_cols=248  Identities=19%  Similarity=0.326  Sum_probs=199.6

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC------------C------ceeeeeeccccceeEEEEecCCC
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------------A------TCLKTINSKKYGVDLVCFTSHPT   66 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~   66 (309)
                      .++..|++++.+.+|+|||.++||||.|.+|||.|++.            |      ..|+++..|...|..+.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            46778999999999999999999999999999999861            1      23677888888999999999888


Q ss_pred             EEEEEcCCCCCceeEEEEccCCce---EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCcee
Q 021648           67 TVIYSSKNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA  143 (309)
Q Consensus        67 ~~~~~s~~g~d~~i~~~d~~~~~~---~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~  143 (309)
                      .+++++.   |++|++||+..-..   .++++ -..+|+++.|+|.|.+|+.|..--+++++|+.+-+|.-.        
T Consensus       186 ILiS~sr---D~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs--------  253 (430)
T KOG0640|consen  186 ILISGSR---DNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS--------  253 (430)
T ss_pred             eEEeccC---CCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee--------
Confidence            8887765   89999999865432   22332 345899999999999999999999999999987765311        


Q ss_pred             EEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648          144 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  223 (309)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~  223 (309)
                        ..|                              ..++...+++|.+|+.|++.++++.||.|++||..++.++.++..
T Consensus       254 --anP------------------------------d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~  301 (430)
T KOG0640|consen  254 --ANP------------------------------DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN  301 (430)
T ss_pred             --cCc------------------------------ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh
Confidence              001                              012445688999999999999999999999999999988887754


Q ss_pred             cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee------------------------------------
Q 021648          224 KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM------------------------------------  267 (309)
Q Consensus       224 ~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~------------------------------------  267 (309)
                      .+ ....|.+..|+.+|+|+++.|.|..+++|.+.+++.+....                                    
T Consensus       302 AH-~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsW  380 (430)
T KOG0640|consen  302 AH-GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSW  380 (430)
T ss_pred             hc-CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeec
Confidence            32 23567788999999999999999999999999887544331                                    


Q ss_pred             -------------cCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648          268 -------------SFDTEPPVIKWTPGSLMFVTGSSELSFWIP  297 (309)
Q Consensus       268 -------------~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~  297 (309)
                                   +|++.+..+.-||.+.-|.+++.|-+...|
T Consensus       381 daRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFW  423 (430)
T KOG0640|consen  381 DARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFW  423 (430)
T ss_pred             cccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeee
Confidence                         467777778889999999999998444333

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=4.8e-29  Score=206.88  Aligned_cols=249  Identities=22%  Similarity=0.286  Sum_probs=201.3

Q ss_pred             CccceEecCCCcceEEEEeCC-C--CCEEEEeeCCCcEEEEEcCCCce----eeeeeccccceeEEEEecCCCEEEEEcC
Q 021648            1 MEVGMSFRDYNGRISSMDFHK-S--SSYLVTASDDESIRLYDVTAATC----LKTINSKKYGVDLVCFTSHPTTVIYSSK   73 (309)
Q Consensus         1 ~~~~~~~~~h~~~V~~i~~s~-~--~~~l~t~s~D~~v~iWd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~s~   73 (309)
                      ++..+++.||.++|.+++|.. +  ...|+|+|.|+++++|-.+.++.    ++.-.+|+..|.++...+++..++++| 
T Consensus       134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS-  212 (423)
T KOG0313|consen  134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS-  212 (423)
T ss_pred             CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec-
Confidence            356789999999999888743 2  23699999999999998876543    344459999999999999999988775 


Q ss_pred             CCCCceeEEEEccCC-------------------------ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCC
Q 021648           74 NGWDESLRLLSLHDN-------------------------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR  128 (309)
Q Consensus        74 ~g~d~~i~~~d~~~~-------------------------~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~  128 (309)
                        ||.++++|+.++.                         .++-.+.||.++|.+|.|++ ...+.|+|+|.+|+.||++
T Consensus       213 --~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle  289 (423)
T KOG0313|consen  213 --WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE  289 (423)
T ss_pred             --ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence              6999999993211                         23567899999999999997 5689999999999999999


Q ss_pred             CceeeeeeeecC-ceeEEECCCCcEEE-EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCC
Q 021648          129 AEKCQGLLRVQG-RPAAAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEG  205 (309)
Q Consensus       129 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg  205 (309)
                      ++++...+.... ..+..+.+...+++ ++.|.-|++||.|+. .+....+++.+|.+-|.++..+|.. ..|++++.|+
T Consensus       290 tg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~-~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~  368 (423)
T KOG0313|consen  290 TGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG-DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN  368 (423)
T ss_pred             cccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCC-CCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence            999887776543 23455566555444 557899999999986 4567778888999999999999976 4578899999


Q ss_pred             cEEEEECCCCe-EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648          206 HIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       206 ~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~  258 (309)
                      ++++||.++.. .+..+.   .|...+.++.|+ ++..|++||.|.+|+|+.-.
T Consensus       369 t~klWDvRS~k~plydI~---~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  369 TVKLWDVRSTKAPLYDIA---GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             eEEEEEeccCCCcceeec---cCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            99999999866 666554   356788999996 67899999999999998754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.2e-30  Score=225.85  Aligned_cols=255  Identities=17%  Similarity=0.321  Sum_probs=210.9

Q ss_pred             CCCcceE---EEEeC-CCCCEEEEeeCCCcEEEEEcCC--Cc----eeeeeeccccceeEEEEecCCCEEEEEcCCCCCc
Q 021648            9 DYNGRIS---SMDFH-KSSSYLVTASDDESIRLYDVTA--AT----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE   78 (309)
Q Consensus         9 ~h~~~V~---~i~~s-~~~~~l~t~s~D~~v~iWd~~~--~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~   78 (309)
                      +|...|.   ++..+ |.+++|.|||.||.||+|++..  ++    ++..++.|..+|..++...+++.++++|+   |-
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~Ss---Dt   95 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASS---DT   95 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecC---Cc
Confidence            3455565   45555 5677899999999999999863  22    47788999999999998889989998876   88


Q ss_pred             eeEEEEccCC--ceEEEeeecccCEEEEEe-cCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEE
Q 021648           79 SLRLLSLHDN--KYLRYFKGHHDRVVSLSL-CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  155 (309)
Q Consensus        79 ~i~~~d~~~~--~~~~~~~~h~~~v~~v~~-~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (309)
                      +|++|+.+.+  -++.++..|.+.|.++++ .++...+||||.|+.|.+||+.++....+-....               
T Consensus        96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~---------------  160 (735)
T KOG0308|consen   96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN---------------  160 (735)
T ss_pred             eEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc---------------
Confidence            9999999877  578889999999999999 6777899999999999999998763200000000               


Q ss_pred             EECCEEEEEECCCCCcCCceEEEeC-CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          156 AFGGYIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                                        .....+. |+...+.+++.++.|..+++|+.++.+++||.++++.+..+.   +|...|..+
T Consensus       161 ------------------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr---GHTdNVr~l  219 (735)
T KOG0308|consen  161 ------------------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR---GHTDNVRVL  219 (735)
T ss_pred             ------------------cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee---ccccceEEE
Confidence                              0001111 455678899999999999999999999999999998887776   467788889


Q ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCCCc
Q 021648          235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL  302 (309)
Q Consensus       235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~  302 (309)
                      ..++||+.++|+|.||+|++||+.-.+++.++..|...+.++.-+|+-..+.+|+.|..+...+|...
T Consensus       220 l~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  220 LVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             EEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            99999999999999999999999999999999999999999999999999999999988888887764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.3e-29  Score=212.51  Aligned_cols=248  Identities=19%  Similarity=0.301  Sum_probs=205.4

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      +.++|......|.+++|-.||++||.|...|.|+|+|..+...++.+..|+.++..+-|+|..+.++++.+  -|..+++
T Consensus        60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s--Dd~v~k~  137 (487)
T KOG0310|consen   60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGS--DDKVVKY  137 (487)
T ss_pred             hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecC--CCceEEE
Confidence            45667778899999999999999999999999999997776678999999999999999998888776643  3789999


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCc-eeeeeeeec-CceeEEECCCCcEEEEEECC
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAE-KCQGLLRVQ-GRPAAAYDDQGLVFAVAFGG  159 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  159 (309)
                      ||+.+...+..+.+|++.|++.+++|... .++|||.||+||+||.++. ..+..+... ......+-+++.+++.+.++
T Consensus       138 ~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn  217 (487)
T KOG0310|consen  138 WDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN  217 (487)
T ss_pred             EEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC
Confidence            99998887668999999999999999644 8999999999999999876 333333322 23346777888899999999


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      .+++||+....+   .+.....|...|+|+++..+++.|++++.|++|++||..+-+.++....    .+++.+++.+|+
T Consensus       218 ~vkVWDl~~G~q---ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~~pvLsiavs~d  290 (487)
T KOG0310|consen  218 SVKVWDLTTGGQ---LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY----PGPVLSIAVSPD  290 (487)
T ss_pred             eEEEEEecCCce---ehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec----ccceeeEEecCC
Confidence            999999875332   1222333667899999999999999999999999999877777777653    478999999999


Q ss_pred             CCEEEEEcCCCcEEEEECCC
Q 021648          240 GMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      ++.++.|-.||.+.+=+...
T Consensus       291 d~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  291 DQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             CceEEEecccceeeeehhhc
Confidence            99999999999887765433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.8e-29  Score=211.39  Aligned_cols=245  Identities=22%  Similarity=0.342  Sum_probs=198.0

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ++..+|.|-.++|++++|.++++.+++++.|+.+++|++++....+++.+|...|+.+.|......+++++   .|.+++
T Consensus       210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs---~DRtiK  286 (459)
T KOG0288|consen  210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGS---ADRTIK  286 (459)
T ss_pred             hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeecc---ccchhh
Confidence            46678888889999999999999999999999999999999999999999999999999988776666665   399999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce-eEEECCCC-cEEEEEECC
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQG-LVFAVAFGG  159 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~  159 (309)
                      +||+....+.+++- -...+..|...  ...++|+-.|++||+||.++..+.....+.+.. +.....++ .+++++.|+
T Consensus       287 ~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd  363 (459)
T KOG0288|consen  287 LWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD  363 (459)
T ss_pred             hhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC
Confidence            99999887766543 22334455444  457899999999999999999887777766543 34444554 577777899


Q ss_pred             EEEEEECCCCCcCCceEEEeCCC--CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEEC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGD--ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  237 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~s  237 (309)
                      .+.+.|+|+++.  ...+...+-  .++.+.+.|||++.|+++|+.||.|+||+..++++...+.... ....+.+++|+
T Consensus       364 tl~viDlRt~eI--~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~-s~~aI~s~~W~  440 (459)
T KOG0288|consen  364 TLKVIDLRTKEI--RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST-SNAAITSLSWN  440 (459)
T ss_pred             ceeeeecccccE--EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC-CCcceEEEEEc
Confidence            999999997642  233333322  2468889999999999999999999999999999887765432 22368899999


Q ss_pred             CCCCEEEEEcCCCcEEEE
Q 021648          238 PEGMFVISGSGDGSVYAW  255 (309)
Q Consensus       238 p~g~~l~s~s~Dg~i~vw  255 (309)
                      |.|.++++++.++.+.+|
T Consensus       441 ~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  441 PSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCCchhhcccCCcceEec
Confidence            999999999999999999

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=8.4e-29  Score=196.34  Aligned_cols=240  Identities=21%  Similarity=0.329  Sum_probs=198.0

Q ss_pred             eeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE--EeeecccCEEEEEecC-CCCeEEEecCCCcEE
Q 021648           47 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR--YFKGHHDRVVSLSLCS-SKDCFISGSLDRTVL  123 (309)
Q Consensus        47 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~--~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~  123 (309)
                      +.+.+|...+..++|..+|.++++++.   |+++++|+++....++  ...+|.+.|-.++|.| +...|++++.|++|+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~---dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSF---DKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR   90 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeeccc---CCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence            556778888999999999999998876   8899999998775443  4578999999999987 466899999999999


Q ss_pred             EeeCCCceeeeeeeecC-ceeEEECCCCcEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEE
Q 021648          124 LWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT  201 (309)
Q Consensus       124 ~Wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~  201 (309)
                      +||++++++...+...+ .....+.|++.+++.+ .|..|...|.|+++...     .......++.++++.++.++...
T Consensus        91 ~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~-----~~~~~~e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN-----EEQFKFEVNEISWNNSNDLFFLT  165 (313)
T ss_pred             EEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee-----hhcccceeeeeeecCCCCEEEEe
Confidence            99999999987765543 4456777777666555 68899999998754311     11122346778899999999999


Q ss_pred             eCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648          202 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG  281 (309)
Q Consensus       202 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~  281 (309)
                      ...|+|.|.....-+.+.++..   |...+.++.|+|+|+|+|+||+|..+.+||+...-+++.++.+.=+|..|+||.|
T Consensus       166 ~GlG~v~ILsypsLkpv~si~A---H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d  242 (313)
T KOG1407|consen  166 NGLGCVEILSYPSLKPVQSIKA---HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD  242 (313)
T ss_pred             cCCceEEEEecccccccccccc---CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence            9999999988777677766664   4567788999999999999999999999999998889999999999999999999


Q ss_pred             eeEEEEccceEEEeee
Q 021648          282 SLMFVTGSSELSFWIP  297 (309)
Q Consensus       282 ~~~l~s~~~d~~~~~~  297 (309)
                      |++|++|++|..+-+.
T Consensus       243 g~~lASaSEDh~IDIA  258 (313)
T KOG1407|consen  243 GRMLASASEDHFIDIA  258 (313)
T ss_pred             cceeeccCccceEEeE
Confidence            9999999999666443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=7e-30  Score=208.30  Aligned_cols=242  Identities=20%  Similarity=0.370  Sum_probs=202.3

Q ss_pred             EecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            6 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      .|..|..+|.|++|+-|...||||+.||.|++|-+.+|.|++.|. .|..+|+++.|+.|+..+++++.   |.++|+.-
T Consensus       258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf---D~tvRiHG  334 (508)
T KOG0275|consen  258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF---DQTVRIHG  334 (508)
T ss_pred             ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc---cceEEEec
Confidence            356789999999999999999999999999999999999999997 78899999999999999998764   99999999


Q ss_pred             ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc----eeEEE--CCCCcEEEEEEC
Q 021648           85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR----PAAAY--DDQGLVFAVAFG  158 (309)
Q Consensus        85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~  158 (309)
                      +++|++++.++||...|+...|.+||..++|+|.||+|++|+.++..|..+++..+.    .....  .++..++.+-..
T Consensus       335 lKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs  414 (508)
T KOG0275|consen  335 LKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS  414 (508)
T ss_pred             cccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCC
Confidence            999999999999999999999999999999999999999999999999887764331    22222  234456666677


Q ss_pred             CEEEEEECCCCCcCCceEEEeCC-CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEEC
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  237 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~s  237 (309)
                      +++.+.++...   ...-++.+. +..+..+++.||.|.++-+.+.|+.++-|...+|.+..++..   |...++.++-+
T Consensus       415 ntv~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V---hEkdvIGl~HH  488 (508)
T KOG0275|consen  415 NTVYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV---HEKDVIGLTHH  488 (508)
T ss_pred             CeEEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec---ccccccccccC
Confidence            88888876421   111122111 123556778999999999999999999999999998887764   55667788999


Q ss_pred             CCCCEEEEEcCCCcEEEEE
Q 021648          238 PEGMFVISGSGDGSVYAWS  256 (309)
Q Consensus       238 p~g~~l~s~s~Dg~i~vwd  256 (309)
                      |..+.+|+=++||.+++|.
T Consensus       489 PHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  489 PHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccchhhhhcccchhhhcC
Confidence            9999999999999999995

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.2e-29  Score=209.28  Aligned_cols=284  Identities=17%  Similarity=0.276  Sum_probs=214.3

Q ss_pred             ceEecCCCcceEEEEeCCCC-CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            4 GMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      +-.|.||...|.+++=+|.. ..+||||.||.|+|||+.+.+|+.++..|...|..+++..  +.+++++   .|.+|++
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvg---dDKtvK~  133 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVG---DDKTVKQ  133 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEec---CCcceee
Confidence            44678999999999999977 6799999999999999999999999999999999999987  5566654   3899999


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCC-cEEE-EEEC
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG-LVFA-VAFG  158 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~-~~~~  158 (309)
                      |-++. ..++++.+ ...+..++-+..++.|+|+|.  .|.|||.+-..++..+.-..  ..++.+.+-. .+++ ++.|
T Consensus       134 wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD  209 (433)
T KOG0268|consen  134 WKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD  209 (433)
T ss_pred             eeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence            99866 35555543 345667777777788999986  57899987666655544332  2344555432 3444 4589


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  238 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp  238 (309)
                      +.|.+||+|...  ++.-..+..   .-+.++++|++..++++..|..++.||++.-  ......+-.|.+.+.+++|||
T Consensus       210 rsIvLyD~R~~~--Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l--~~p~~v~~dhvsAV~dVdfsp  282 (433)
T KOG0268|consen  210 RSIVLYDLRQAS--PLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNL--SRPLNVHKDHVSAVMDVDFSP  282 (433)
T ss_pred             CceEEEecccCC--ccceeeeec---cccceecCccccceeeccccccceehhhhhh--cccchhhcccceeEEEeccCC
Confidence            999999999754  333222222   3467899999999999999999999998652  223334445778899999999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEeecCC---CCCcEEEECCCeeEEEEccce--EEEeee-cCCCcccc
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFD---TEPPVIKWTPGSLMFVTGSSE--LSFWIP-DLSKLGAY  305 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~---~~v~~l~~~p~~~~l~s~~~d--~~~~~~-~~~~~~~~  305 (309)
                      -|+.++|||.|.+|+||.+..+..-..  .|+   ..|.++.||-|.+++++||.|  +++|-. .-.+||.+
T Consensus       283 tG~EfvsgsyDksIRIf~~~~~~SRdi--YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~  353 (433)
T KOG0268|consen  283 TGQEFVSGSYDKSIRIFPVNHGHSRDI--YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI  353 (433)
T ss_pred             CcchhccccccceEEEeecCCCcchhh--hhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence            999999999999999999977643221  122   468999999999999999998  666743 33355543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.3e-28  Score=206.99  Aligned_cols=272  Identities=20%  Similarity=0.253  Sum_probs=213.6

Q ss_pred             CcceEEEEeCCCCCE-EEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648           11 NGRISSMDFHKSSSY-LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   89 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~-l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~   89 (309)
                      .++|++++|+|...+ +|+++ --.+.||+..+...++++...+..+..++|..||..++++..   .+.|+++|+++..
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~---sG~V~vfD~k~r~  101 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE---SGHVKVFDMKSRV  101 (487)
T ss_pred             cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC---cCcEEEeccccHH
Confidence            468999999996644 44443 368999999988888989888888999999999988877643   6789999987777


Q ss_pred             eEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeeeeeeecCc--eeEEEC--CCCcEEEEEECCEEEEE
Q 021648           90 YLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYD--DQGLVFAVAFGGYIRMF  164 (309)
Q Consensus        90 ~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~i~~~  164 (309)
                      .++.+.+|+.+|..+.|+|++ ..|++|+.|+.+++||+.+...+..+..+..  -+....  .+..++++++||.|++|
T Consensus       102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~  181 (487)
T KOG0310|consen  102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW  181 (487)
T ss_pred             HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence            888999999999999999964 5789999999999999987765333332221  122222  33457778899999999


Q ss_pred             ECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEE
Q 021648          165 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  244 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~  244 (309)
                      |+|.....   +..+ .|..+|..+.+-|.|..+++++. ..|++||+.+|..+-...  ..|...|.++++..+++.|+
T Consensus       182 DtR~~~~~---v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~--~~H~KtVTcL~l~s~~~rLl  254 (487)
T KOG0310|consen  182 DTRSLTSR---VVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSM--FNHNKTVTCLRLASDSTRLL  254 (487)
T ss_pred             EeccCCce---eEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhh--hcccceEEEEEeecCCceEe
Confidence            99976422   2222 24467889999999999888764 478999998766553222  13677899999999999999


Q ss_pred             EEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEE
Q 021648          245 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF  294 (309)
Q Consensus       245 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~  294 (309)
                      |||.|+.++|||+.+.+.+..+ .++++|.+++.+|+++.++.|-++.-+
T Consensus       255 S~sLD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv  303 (487)
T KOG0310|consen  255 SGSLDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLV  303 (487)
T ss_pred             ecccccceEEEEccceEEEEee-ecccceeeEEecCCCceEEEeccccee
Confidence            9999999999999888777776 578899999999999999998887433

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=9e-28  Score=214.29  Aligned_cols=286  Identities=18%  Similarity=0.295  Sum_probs=222.8

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +++.+|.||+.+|+++.|+..|.+|||||.|+.|.+||+-.-+-+..+++|+..++..-|......+++++.   |..++
T Consensus        98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sK---Ds~iK  174 (888)
T KOG0306|consen   98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSK---DSMIK  174 (888)
T ss_pred             ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEecc---CceEE
Confidence            467789999999999999999999999999999999999877778899999999988888776667777765   88999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc-------eeeee-----eeec--Cc-eeEEE
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-------KCQGL-----LRVQ--GR-PAAAY  146 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~-------~~~~~-----~~~~--~~-~~~~~  146 (309)
                      +||+++..+..+.-.|.+.|+++++.+  +.+++++.|+.+++|++..+       +...+     +.-+  ++ ...+.
T Consensus       175 ~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~  252 (888)
T KOG0306|consen  175 FWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVT  252 (888)
T ss_pred             EEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEee
Confidence            999999999999999999999999987  78999999999999997110       00000     0000  00 00011


Q ss_pred             CCCC----------------------------------------------------------------------------
Q 021648          147 DDQG----------------------------------------------------------------------------  150 (309)
Q Consensus       147 ~~~~----------------------------------------------------------------------------  150 (309)
                      +.++                                                                            
T Consensus       253 d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~  332 (888)
T KOG0306|consen  253 DFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSG  332 (888)
T ss_pred             cCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecC
Confidence            1111                                                                            


Q ss_pred             ---cEEEEEECCEEEEEECCCCC-c----CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648          151 ---LVFAVAFGGYIRMFDARKYE-K----GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  222 (309)
Q Consensus       151 ---~~~~~~~~~~i~~~d~~~~~-~----~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~  222 (309)
                         ..+..-.++.+..|.+.... .    .....+...+|.++|+++++|.|...++++ ..+.+.+|+..+..++.++.
T Consensus       333 ~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~  411 (888)
T KOG0306|consen  333 GTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTIT  411 (888)
T ss_pred             CcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEec
Confidence               11112234555555544311 0    112235677889999999999988766554 57789999999999998875


Q ss_pred             ecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeec
Q 021648          223 VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  298 (309)
Q Consensus       223 ~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~  298 (309)
                      .     +.+.+..|-|.++++++|...|.+.++|+.+...+.+..+|.+.+..++.+||++.+++||.|  +++|.-.
T Consensus       412 ~-----~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~  484 (888)
T KOG0306|consen  412 C-----GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFK  484 (888)
T ss_pred             c-----ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEE
Confidence            3     466788999999999999999999999999999999999999999999999999999999998  6666443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1e-26  Score=181.23  Aligned_cols=248  Identities=19%  Similarity=0.362  Sum_probs=196.0

Q ss_pred             cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee-----eeeeccccceeEEEEecCCC---EEEEEcCCCCCce
Q 021648            8 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-----KTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDES   79 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~---~~~~~s~~g~d~~   79 (309)
                      +.|.+.|.|++|+|+|.++||||.|++|++--++...|.     -++.-|...+..+||-.+++   .++.+...| |..
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag-dc~  164 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG-DCK  164 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC-cce
Confidence            569999999999999999999999999999866544442     24667788899999976554   344433233 888


Q ss_pred             eEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECC
Q 021648           80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG  159 (309)
Q Consensus        80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (309)
                      |.+-|-.+|+....+.||++.|.++- +=++-.|++||.|++||+||++-+.++.++....+                  
T Consensus       165 iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~------------------  225 (350)
T KOG0641|consen  165 IYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH------------------  225 (350)
T ss_pred             EEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCccc------------------
Confidence            88889999999999999999999863 33577999999999999999987766554421110                  


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                                 .+       +-+.+.+.+++..|.|++|++|-.|....+||++-+..++.|..   |...+.++.|||.
T Consensus       226 -----------~~-------glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p---hsadir~vrfsp~  284 (350)
T KOG0641|consen  226 -----------DG-------GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP---HSADIRCVRFSPG  284 (350)
T ss_pred             -----------CC-------CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC---CccceeEEEeCCC
Confidence                       00       01224578899999999999999999999999999999987753   4567889999999


Q ss_pred             CCEEEEEcCCCcEEEEECCCC----ceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEee
Q 021648          240 GMFVISGSGDGSVYAWSVRSG----KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  296 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~~~----~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~  296 (309)
                      ..|++++|.|..|++=|+...    -++.....|...+..+.|+|..-.|++.+.|  ..+|-
T Consensus       285 a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa  347 (350)
T KOG0641|consen  285 AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA  347 (350)
T ss_pred             ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence            999999999999999998642    1223334688888999999999999998887  55553

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=8.5e-27  Score=212.85  Aligned_cols=224  Identities=13%  Similarity=0.216  Sum_probs=168.3

Q ss_pred             EeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecC-CCEEEEEcCCCCCceeEEEEccCCc--------eEEEeeecc
Q 021648           28 TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDNK--------YLRYFKGHH   98 (309)
Q Consensus        28 t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~s~~g~d~~i~~~d~~~~~--------~~~~~~~h~   98 (309)
                      +|+.++.+++|+......+..+.+|...|..++|+|+ +..+++++.   |++|++||+.++.        .+..+.+|.
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~---DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~  125 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSE---DLTIRVWEIPHNDESVKEIKDPQCILKGHK  125 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCCccccccccceEEeecCC
Confidence            3667899999998887888899999999999999997 567776654   8999999997532        345688999


Q ss_pred             cCEEEEEecCCCCe-EEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEE
Q 021648           99 DRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF  177 (309)
Q Consensus        99 ~~v~~v~~~~~~~~-l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  177 (309)
                      ..|.+++|+|++.. |+|++.|++|++||+++++....+.                                        
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----------------------------------------  165 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----------------------------------------  165 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----------------------------------------
Confidence            99999999998875 5799999999999998764321110                                        


Q ss_pred             EeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCC--CccceEEECCCCCEEEEEcCCC----c
Q 021648          178 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR--NSTLEASFSPEGMFVISGSGDG----S  251 (309)
Q Consensus       178 ~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~sp~g~~l~s~s~Dg----~  251 (309)
                          +...+.+++|+|+|.+|++++.|+.|++||+++++.+.++..+....  ..++...|+|++++|+|+|.|+    +
T Consensus       166 ----~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~  241 (568)
T PTZ00420        166 ----MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE  241 (568)
T ss_pred             ----cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE
Confidence                01236789999999999999999999999999999888776433211  1123345779999999988875    7


Q ss_pred             EEEEECCC-CceEEEeecCC--CCCcEEEECCCeeEEEEccce--EEEeeec
Q 021648          252 VYAWSVRS-GKEVASWMSFD--TEPPVIKWTPGSLMFVTGSSE--LSFWIPD  298 (309)
Q Consensus       252 i~vwd~~~-~~~~~~~~~~~--~~v~~l~~~p~~~~l~s~~~d--~~~~~~~  298 (309)
                      |+|||+++ .+++..+..+.  +.+.-....+++.++++|+.|  +++|...
T Consensus       242 VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        242 MKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             EEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence            99999985 55565543333  222223334568899999887  6666553

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=7.6e-27  Score=211.87  Aligned_cols=241  Identities=14%  Similarity=0.198  Sum_probs=180.8

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee-------------eeeeccccceeEEEEec-CCCEEEEEcCCCC
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-------------KTINSKKYGVDLVCFTS-HPTTVIYSSKNGW   76 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~   76 (309)
                      -..|.....++++..+++++.+..+..|+...+..+             ..+.+|...|..++|+| ++..+++++.   
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~---   96 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASE---   96 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeC---
Confidence            345666667788788889999988899987544322             13678888999999999 6777777754   


Q ss_pred             CceeEEEEccCC-------ceEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECC
Q 021648           77 DESLRLLSLHDN-------KYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD  148 (309)
Q Consensus        77 d~~i~~~d~~~~-------~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~  148 (309)
                      |++|++||+.++       +.+..+.+|...|.+++|+|++ +.|+|++.|++|++||+++++....             
T Consensus        97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~-------------  163 (493)
T PTZ00421         97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV-------------  163 (493)
T ss_pred             CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE-------------
Confidence            899999999764       3567889999999999999975 6999999999999999976543211             


Q ss_pred             CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCC
Q 021648          149 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  228 (309)
Q Consensus       149 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~  228 (309)
                                                    +.++...+.+++|+|+|.+|++++.|++|++||+++++.+.++..+.  .
T Consensus       164 ------------------------------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~--~  211 (493)
T PTZ00421        164 ------------------------------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA--S  211 (493)
T ss_pred             ------------------------------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC--C
Confidence                                          11233467889999999999999999999999999998887765332  1


Q ss_pred             CccceEEECCCCCEEEEEc----CCCcEEEEECCCCc-eEEEeecC-CCCCcEEEECCCeeEEEEccc-eEEEeeecC
Q 021648          229 NSTLEASFSPEGMFVISGS----GDGSVYAWSVRSGK-EVASWMSF-DTEPPVIKWTPGSLMFVTGSS-ELSFWIPDL  299 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s----~Dg~i~vwd~~~~~-~~~~~~~~-~~~v~~l~~~p~~~~l~s~~~-d~~~~~~~~  299 (309)
                      .....+.|.|++..+++++    .|+.|++||+++.. ++.....+ ...+....|+|+++++++++. |..+..|++
T Consensus       212 ~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        212 AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence            2234678999988888765    47899999998754 33333323 234555679999998888774 644444443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.3e-27  Score=200.30  Aligned_cols=277  Identities=17%  Similarity=0.185  Sum_probs=211.9

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceee----e-------------e-eccccceeEEEEecCCC
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK----T-------------I-NSKKYGVDLVCFTSHPT   66 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~----~-------------~-~~~~~~v~~~~~~~~~~   66 (309)
                      .....|.-+|.++.++|++++..+++.|++|.=|++.+|+..+    .             - ..|...+.+++.++++.
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            4567899999999999999999999999999999998887431    1             1 14555678999999999


Q ss_pred             EEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc--eeE
Q 021648           67 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAA  144 (309)
Q Consensus        67 ~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~--~~~  144 (309)
                      +++++   |.|..|.+|+..+.+.++++++|.+.|.+++|-.....+.++|.|+++++|++.....+.++-.+..  ...
T Consensus       216 ylatg---g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  216 YLATG---GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             EEEec---CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence            99976   4589999999999999999999999999999998888999999999999999876544433311111  112


Q ss_pred             EECCCCcEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648          145 AYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  223 (309)
Q Consensus       145 ~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~  223 (309)
                      ........++++ .|.++++|++....+     +...++...+-|++|=.+. .+++|++||.|.+|++.+.+++.+...
T Consensus       293 daL~reR~vtVGgrDrT~rlwKi~eesq-----lifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~  366 (479)
T KOG0299|consen  293 DALSRERCVTVGGRDRTVRLWKIPEESQ-----LIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLKKKPLFTSRL  366 (479)
T ss_pred             chhcccceEEeccccceeEEEeccccce-----eeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecccCceeEeec
Confidence            222344566655 799999999843221     2222344567788876544 578999999999999998888876653


Q ss_pred             c-CCCCC--------ccceEEECCCCCEEEEEcCCCcEEEEECCCCc----eEEEeecCCCCCcEEEECCCeeEEE-Ecc
Q 021648          224 K-PVSRN--------STLEASFSPEGMFVISGSGDGSVYAWSVRSGK----EVASWMSFDTEPPVIKWTPGSLMFV-TGS  289 (309)
Q Consensus       224 ~-~~~~~--------~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~----~~~~~~~~~~~v~~l~~~p~~~~l~-s~~  289 (309)
                      . +....        .+.+++..|....+|+||.+|+|++|-+.++-    ++..++ ..+.|++|+|+++|+.++ ..+
T Consensus       367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecc
Confidence            2 11111        57789999999999999999999999999873    344444 678999999999998554 444


Q ss_pred             ce
Q 021648          290 SE  291 (309)
Q Consensus       290 ~d  291 (309)
                      .+
T Consensus       446 kE  447 (479)
T KOG0299|consen  446 KE  447 (479)
T ss_pred             cc
Confidence            44

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=4.4e-27  Score=187.49  Aligned_cols=238  Identities=15%  Similarity=0.267  Sum_probs=183.3

Q ss_pred             cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcC--CCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648            8 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      .+|+..|.+++|+|.|++||+||.|.++-||.-.  +-+|+.++++|...|.+++|+++|.++++++.   |..|=+|.+
T Consensus        58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR---DKSVWiWe~  134 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR---DKSVWIWEI  134 (312)
T ss_pred             ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC---CCeEEEEEe
Confidence            3799999999999999999999999999999655  34789999999999999999999999999986   889999988


Q ss_pred             cCC---ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCC-Cce--eeeeeeecC--ceeEEECCCC-cEEEEE
Q 021648           86 HDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEK--CQGLLRVQG--RPAAAYDDQG-LVFAVA  156 (309)
Q Consensus        86 ~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~-~~~--~~~~~~~~~--~~~~~~~~~~-~~~~~~  156 (309)
                      ..+   ++..+++.|...|..|.|+|....|+|+|.|.+|++|.-. ...  +..++....  .-...|++.+ ++.++.
T Consensus       135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s  214 (312)
T KOG0645|consen  135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS  214 (312)
T ss_pred             cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence            644   3678899999999999999999999999999999999865 332  222332222  2245677877 455666


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEe----eecCCCCCccc
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY----NVKPVSRNSTL  232 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~----~~~~~~~~~~~  232 (309)
                      .|++++||-....-.        ..+...+..+.+.  ...|++++.|+.|++|.......-..+    .....|...|.
T Consensus       215 dD~tv~Iw~~~~~~~--------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVN  284 (312)
T KOG0645|consen  215 DDGTVSIWRLYTDLS--------GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVN  284 (312)
T ss_pred             CCcceEeeeeccCcc--------hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccc
Confidence            789999997442110        0122345666776  457899999999999975532111111    12234556788


Q ss_pred             eEEECCC-CCEEEEEcCCCcEEEEECC
Q 021648          233 EASFSPE-GMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       233 ~~~~sp~-g~~l~s~s~Dg~i~vwd~~  258 (309)
                      .+.|+|. .+.|++||.||.|++|.+.
T Consensus       285 sV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  285 SVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             eEEEcCCCCCceeecCCCceEEEEEec
Confidence            9999995 7899999999999999874

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.7e-27  Score=209.86  Aligned_cols=241  Identities=16%  Similarity=0.255  Sum_probs=199.3

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec-cccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      +.+.-+...|+++.|+++|.+||.|-.+|+|.|||..+.+.++.+.+ |...|.++++.  +..+.+++   .|+.|..+
T Consensus       211 ~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGs---r~~~I~~~  285 (484)
T KOG0305|consen  211 ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGS---RDGKILNH  285 (484)
T ss_pred             EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEec---CCCcEEEE
Confidence            34444588999999999999999999999999999999999999998 88889988887  33444444   38899999


Q ss_pred             EccCCceEEE-eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEE
Q 021648           84 SLHDNKYLRY-FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR  162 (309)
Q Consensus        84 d~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (309)
                      |+...+.... +++|...|-.+.|++|+++|++|+.|+.+.+||.....+.                             
T Consensus       286 dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~-----------------------------  336 (484)
T KOG0305|consen  286 DVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK-----------------------------  336 (484)
T ss_pred             EEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc-----------------------------
Confidence            9988765444 8999999999999999999999999999999997333221                             


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEe--CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                                    +.+..|...|.+++++|-. .+||+|+  .|++|++||..++..+.....    ...|..+.|+|.
T Consensus       337 --------------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt----gsQVcsL~Wsk~  398 (484)
T KOG0305|consen  337 --------------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT----GSQVCSLIWSKK  398 (484)
T ss_pred             --------------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc----CCceeeEEEcCC
Confidence                          1222345667888999954 5666654  699999999999999887653    346788999999


Q ss_pred             CCEEEEE--cCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeee
Q 021648          240 GMFVISG--SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  297 (309)
Q Consensus       240 g~~l~s~--s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~  297 (309)
                      .+.|+++  -.+..|.||+..+.+++..+.+|+..|..++++||+..+++|+.|  ++||..
T Consensus       399 ~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  399 YKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             CCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence            9888877  345689999999999999999999999999999999999999988  777743

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7e-28  Score=190.47  Aligned_cols=274  Identities=20%  Similarity=0.292  Sum_probs=200.0

Q ss_pred             EEEEeCC--CCCE-EEEee-----CCCcEEEEEcCCCceeeeeec--cccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648           15 SSMDFHK--SSSY-LVTAS-----DDESIRLYDVTAATCLKTINS--KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus        15 ~~i~~s~--~~~~-l~t~s-----~D~~v~iWd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      .++.|||  ++++ +||+.     ..|++-|-|+..+.-++....  -+.....+++++..+.++.++. | |+++++||
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~-G-DGSLrl~d   89 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAAS-G-DGSLRLFD   89 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEe-c-CceEEEec
Confidence            4788998  3443 33433     367888888865555555443  2345778999997776555543 3 99999999


Q ss_pred             ccC-CceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECC--CCcEEEEEEC
Q 021648           85 LHD-NKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDD--QGLVFAVAFG  158 (309)
Q Consensus        85 ~~~-~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~  158 (309)
                      +.. ..++..++.|+.+|.++.|++- .+.++++|+|++|++||+.-++.+.+++.+...  .+.++|  ++.+.+++.|
T Consensus        90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd  169 (311)
T KOG0277|consen   90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD  169 (311)
T ss_pred             cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence            643 5689999999999999999984 557889999999999998776666555432211  123333  4456666779


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCC-eEeEEeeecCCCCCccceEEE
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      +.+++||+|..  ++...  +..|...+.++.++. +...+++++.|+.|++||+++- ..+.++.   .|.-.|..+.|
T Consensus       170 ~~l~lwdvr~~--gk~~~--i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~---gh~~AVRkvk~  242 (311)
T KOG0277|consen  170 GTLRLWDVRSP--GKFMS--IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN---GHGLAVRKVKF  242 (311)
T ss_pred             ceEEEEEecCC--CceeE--EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeec---CCceEEEEEec
Confidence            99999998853  33333  344556788888876 5678889999999999999763 3344433   46667889999


Q ss_pred             CCC-CCEEEEEcCCCcEEEEECCCCce-EEEeecCCCCCcEEEECC-CeeEEEEccce--EEEeee
Q 021648          237 SPE-GMFVISGSGDGSVYAWSVRSGKE-VASWMSFDTEPPVIKWTP-GSLMFVTGSSE--LSFWIP  297 (309)
Q Consensus       237 sp~-g~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~~p-~~~~l~s~~~d--~~~~~~  297 (309)
                      ||. ...|||+|.|-+++|||...+.. +++...|+..+-.+.||+ +..++++.+-|  +++|.|
T Consensus       243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  243 SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             CcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            996 57899999999999999986543 556678888888899999 56799999988  555554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=2.3e-25  Score=177.41  Aligned_cols=236  Identities=15%  Similarity=0.222  Sum_probs=193.4

Q ss_pred             eeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCC
Q 021648           49 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR  128 (309)
Q Consensus        49 ~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~  128 (309)
                      +.+|.-+++.+-+..+|..+++++.   |.+..||--.+|+.+.++.||++.|++++..-+.+.++||+.|.++++||.+
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaK---D~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAK---DSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecC---CCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            5678889999999999999998876   8899999988999999999999999999999999999999999999999999


Q ss_pred             CceeeeeeeecC-ceeEEECCCCcEEEEEEC------CEEEEEECCCCCc---CCceEEEeCCCCCCCeEEEEccCCCEE
Q 021648          129 AEKCQGLLRVQG-RPAAAYDDQGLVFAVAFG------GYIRMFDARKYEK---GPFDIFSVGGDISDANVVKFSNDGRLM  198 (309)
Q Consensus       129 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~v~~s~dg~~l  198 (309)
                      ++++...+..+. ...+.++.++.++....|      +.|.++|++....   ..-+.+.+..+.+.++..-++|-+++|
T Consensus        83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            999887776543 234566677766665543      6899999885321   111133333344678888999999999


Q ss_pred             EEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEE
Q 021648          199 LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW  278 (309)
Q Consensus       199 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~  278 (309)
                      ++|..||.|.+||+++|..+....  ..|...+.++.|+||..+++|+|.|.+.++||..+.+.++++.. ..++++.++
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~--~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aai  239 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSD--EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAI  239 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeech--hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceec
Confidence            999999999999999986554322  24556788999999999999999999999999999998988865 458999999


Q ss_pred             CCCeeEEEEccc
Q 021648          279 TPGSLMFVTGSS  290 (309)
Q Consensus       279 ~p~~~~l~s~~~  290 (309)
                      +|....++-|+.
T Consensus       240 sP~~d~VilgGG  251 (327)
T KOG0643|consen  240 SPLLDHVILGGG  251 (327)
T ss_pred             ccccceEEecCC
Confidence            998777766653

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=6.3e-26  Score=210.08  Aligned_cols=294  Identities=17%  Similarity=0.244  Sum_probs=217.9

Q ss_pred             ecCCCc-ceEEEEeCCCCCEEEEee--CCCcEEEEEcCC------------CceeeeeeccccceeEEEEecCCCEEEEE
Q 021648            7 FRDYNG-RISSMDFHKSSSYLVTAS--DDESIRLYDVTA------------ATCLKTINSKKYGVDLVCFTSHPTTVIYS   71 (309)
Q Consensus         7 ~~~h~~-~V~~i~~s~~~~~l~t~s--~D~~v~iWd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   71 (309)
                      +.+|.+ .|.+|+.+|||..+|||+  .|+.++||+.+.            .+.+.+...|...|.++-|++||.+++++
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG   87 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG   87 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence            345554 799999999999999999  999999998642            12344567788889999999999999998


Q ss_pred             cCCCCCceeEEEEccC-------C-----------ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee
Q 021648           72 SKNGWDESLRLLSLHD-------N-----------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ  133 (309)
Q Consensus        72 s~~g~d~~i~~~d~~~-------~-----------~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~  133 (309)
                      +.   |+.|-+|....       +           +++..+.+|...|..++|+|++.+|+|+|.|++|.+|+.++-++.
T Consensus        88 SD---D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~  164 (942)
T KOG0973|consen   88 SD---DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL  164 (942)
T ss_pred             cC---cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee
Confidence            75   78899998772       1           157789999999999999999999999999999999999888766


Q ss_pred             eeeeecC--ceeEEECCCCcEEEEE-ECCEEEEEECCCCCcC--CceEEEeCCCCCCCeEEEEccCCCEEEEEe-CC---
Q 021648          134 GLLRVQG--RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKG--PFDIFSVGGDISDANVVKFSNDGRLMLLTT-ME---  204 (309)
Q Consensus       134 ~~~~~~~--~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~-~d---  204 (309)
                      .+++.+.  .....++|.++++|+- .|++|++|++......  ...-+...+-..-...+.+||||++|++.- .+   
T Consensus       165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~  244 (942)
T KOG0973|consen  165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK  244 (942)
T ss_pred             eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence            6665432  3457889999988875 5789999996542210  000011011112345678999999998753 23   


Q ss_pred             CcEEEEECCCCeEeEEeeecCCCCCccceEEECC-----CCC------------EEEEEcCCCcEEEEECCCCceEEEee
Q 021648          205 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-----EGM------------FVISGSGDGSVYAWSVRSGKEVASWM  267 (309)
Q Consensus       205 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp-----~g~------------~l~s~s~Dg~i~vwd~~~~~~~~~~~  267 (309)
                      ..+.|.+..+-+.-..+-   +|..++..+.|+|     ..+            .+|+||.|++|.||.....+++....
T Consensus       245 ~~~~IieR~tWk~~~~Lv---GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~  321 (942)
T KOG0973|consen  245 STIAIIERGTWKVDKDLV---GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH  321 (942)
T ss_pred             ceeEEEecCCceeeeeee---cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh
Confidence            367787765544444443   3566788899998     112            67899999999999998888765432


Q ss_pred             -cCCCCCcEEEECCCeeEEEEccceEEE--eeecCCCccccc
Q 021648          268 -SFDTEPPVIKWTPGSLMFVTGSSELSF--WIPDLSKLGAYV  306 (309)
Q Consensus       268 -~~~~~v~~l~~~p~~~~l~s~~~d~~~--~~~~~~~~~~~~  306 (309)
                       -.+..|..++|+|||..|...|.|..+  ..-+.+.||+.+
T Consensus       322 ~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~l  363 (942)
T KOG0973|consen  322 NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVAL  363 (942)
T ss_pred             hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCccc
Confidence             345789999999999888777777444  444666666643

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.7e-26  Score=185.53  Aligned_cols=283  Identities=16%  Similarity=0.200  Sum_probs=216.4

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      +.+.|.||.+.|..++-.....++.|+|.|.+.+||.+++|.|+.++.+|...|.++.|++.+..++.++.   |++.-+
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG---D~taHI  216 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG---DETAHI  216 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC---CcchHH
Confidence            56778999999999999888889999999999999999999999999999999999999998888877763   555555


Q ss_pred             EEcc------C----------------------------------CceEEEeeecccCEEEEEecCCCCeEEEecCCCcE
Q 021648           83 LSLH------D----------------------------------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTV  122 (309)
Q Consensus        83 ~d~~------~----------------------------------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v  122 (309)
                      |-..      .                                  ..++..+.||.+.|.+..|...++.++|+|+|++.
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA  296 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA  296 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence            5410      0                                  01356789999999999999999999999999999


Q ss_pred             EEeeCCCceeeeeeeecCc--eeEEECCC-CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEE
Q 021648          123 LLWDQRAEKCQGLLRVQGR--PAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML  199 (309)
Q Consensus       123 ~~Wd~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~  199 (309)
                      .+||.+++.++..+..+..  .-++..|. ..+++.+.|-+-++||.|. ..+  .+.-..||...+.++.|..|.+ ++
T Consensus       297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-aI~--sV~VFQGHtdtVTS~vF~~dd~-vV  372 (481)
T KOG0300|consen  297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-AIQ--SVAVFQGHTDTVTSVVFNTDDR-VV  372 (481)
T ss_pred             eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh-hcc--eeeeecccccceeEEEEecCCc-ee
Confidence            9999999988766643321  12233343 3456666789999999883 112  2334567888999999987655 68


Q ss_pred             EEeCCCcEEEEECCC-CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-----ecCCCCC
Q 021648          200 LTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-----MSFDTEP  273 (309)
Q Consensus       200 ~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-----~~~~~~v  273 (309)
                      +++.|.+|++||++. ...+.++..    ..++..++.+..+..||.--+...|++||+. |..+.-+     .+|..-|
T Consensus       373 SgSDDrTvKvWdLrNMRsplATIRt----dS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV  447 (481)
T KOG0300|consen  373 SGSDDRTVKVWDLRNMRSPLATIRT----DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMV  447 (481)
T ss_pred             ecCCCceEEEeeeccccCcceeeec----CCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceee
Confidence            999999999999876 345555543    2456678888888899999999999999995 4554444     3688889


Q ss_pred             cEEEECCCe--eEEEEccceEEEeee
Q 021648          274 PVIKWTPGS--LMFVTGSSELSFWIP  297 (309)
Q Consensus       274 ~~l~~~p~~--~~l~s~~~d~~~~~~  297 (309)
                      .|++|...-  .-|.+++-|..+.-|
T Consensus       448 ~c~AW~eehp~cnLftcGFDR~v~gW  473 (481)
T KOG0300|consen  448 TCCAWLEEHPACNLFTCGFDRMVAGW  473 (481)
T ss_pred             eeeeccccCcccccccccccceeeee
Confidence            999996542  334455566444333

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=6.4e-24  Score=183.00  Aligned_cols=267  Identities=12%  Similarity=0.159  Sum_probs=190.2

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEE
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  102 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~  102 (309)
                      ++.++|++.|+++++||..++++++.+..+.. +..++|++++..++++.  +.++.+++||+.+++.+..+..+.. +.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~--~~~~~v~~~d~~~~~~~~~~~~~~~-~~   76 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCA--SDSDTIQVIDLATGEVIGTLPSGPD-PE   76 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEE--CCCCeEEEEECCCCcEEEeccCCCC-cc
Confidence            35789999999999999999999888876543 56789999998775543  2378999999999888777765544 56


Q ss_pred             EEEecCCCCeEE-EecCCCcEEEeeCCCceeeeeeeecC-ceeEEECCCCcEEEEEEC--CEEEEEECCCCCcCCceEEE
Q 021648          103 SLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVAFG--GYIRMFDARKYEKGPFDIFS  178 (309)
Q Consensus       103 ~v~~~~~~~~l~-s~s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~  178 (309)
                      .+.++|+++.++ +++.|+.+++||+++.+....+.... .....+.+++.+++.+..  ..+..||.+..+.  .....
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~--~~~~~  154 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI--VDNVL  154 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE--EEEEE
Confidence            788999998664 55678999999998877665554322 234567777776666543  3577788764321  11111


Q ss_pred             eCCCCCCCeEEEEccCCCEEEEE-eCCCcEEEEECCCCeEeEEeeecC--CC--CCccceEEECCCCCEEEEE-cCCCcE
Q 021648          179 VGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKP--VS--RNSTLEASFSPEGMFVISG-SGDGSV  252 (309)
Q Consensus       179 ~~~~~~~~~~v~~s~dg~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~--~~--~~~~~~~~~sp~g~~l~s~-s~Dg~i  252 (309)
                         .......++|+|+|+.++.+ ..++.|++||+.+++.+..+....  .+  ......++|+|+|++++.+ +.++.+
T Consensus       155 ---~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i  231 (300)
T TIGR03866       155 ---VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV  231 (300)
T ss_pred             ---cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence               11234678999999988655 468999999999988776554221  11  1123468899999986554 567789


Q ss_pred             EEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEcc-ce--EEEeeecC
Q 021648          253 YAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS-SE--LSFWIPDL  299 (309)
Q Consensus       253 ~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~-~d--~~~~~~~~  299 (309)
                      .+||+.+++.+..+. +...+.+++|+|+++.|+++. .+  +.+|..+-
T Consensus       232 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       232 AVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             EEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            999999887766543 445789999999999887753 33  66665543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=4.5e-28  Score=215.43  Aligned_cols=238  Identities=19%  Similarity=0.370  Sum_probs=208.4

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      +.+..|+..|.++..-..++.+++|+.|..+-+|.+....++..+.+|..+|.++.|......+..++.   +++||+||
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsa---sgtiK~wD   98 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSA---SGTIKVWD   98 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccccc---CCceeeee
Confidence            456789999999998778899999999999999999888888889999999999999987776666654   78999999


Q ss_pred             ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEE
Q 021648           85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF  164 (309)
Q Consensus        85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (309)
                      ++..+.++++.||...+..|.|+|-+.++++++.|..+++||.+...|...+.                           
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~---------------------------  151 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK---------------------------  151 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec---------------------------
Confidence            99999999999999999999999999999999999999999987554432221                           


Q ss_pred             ECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEE
Q 021648          165 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  244 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~  244 (309)
                                      ++..-+.++.|+|+|++++.++.|..++|||...|+++.+|..   |...+..+.|+|..-.++
T Consensus       152 ----------------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~---~e~~v~sle~hp~e~Lla  212 (825)
T KOG0267|consen  152 ----------------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS---HEGKVQSLEFHPLEVLLA  212 (825)
T ss_pred             ----------------CCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc---ccccccccccCchhhhhc
Confidence                            1223467889999999999999999999999999999988874   445677788999999999


Q ss_pred             EEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          245 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       245 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      +||.|+++++||+++-+.+.........|.+++|+|+++.+.+|..+
T Consensus       213 ~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  213 PGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             cCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            99999999999999888887777778889999999999999999875

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3.1e-26  Score=194.43  Aligned_cols=239  Identities=19%  Similarity=0.293  Sum_probs=189.1

Q ss_pred             cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648            8 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   87 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~   87 (309)
                      ++|.+.|.+++.+|||+|||||+.|+.|.|||.++++.++.+.+|...|..++|......+++++.   |..+++|+++.
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~---Drsvkvw~~~~  275 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA---DRSVKVWSIDQ  275 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec---CCceEEEehhH
Confidence            489999999999999999999999999999999999999999999999999999998888888764   99999999999


Q ss_pred             CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec--CceeEEECCCCcEEEEEECCEEEEEE
Q 021648           88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQGLVFAVAFGGYIRMFD  165 (309)
Q Consensus        88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~d  165 (309)
                      ..++.++-||++.|.+++...-.+.+-.|+.|+++++|++.... ...++..  ...++++-++..+++++.+|.|.+|+
T Consensus       276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs  354 (479)
T KOG0299|consen  276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWS  354 (479)
T ss_pred             hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEecccceeeccCCceEEEee
Confidence            99999999999999999988877777777799999999984332 2222222  12356777888899999999999999


Q ss_pred             CCCCCcCCceEEEeCC---------CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe----EeEEeeecCCCCCccc
Q 021648          166 ARKYEKGPFDIFSVGG---------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT----LLSTYNVKPVSRNSTL  232 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~---------~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~----~~~~~~~~~~~~~~~~  232 (309)
                      +.+.+. -+.....++         ....+++++..|...++++|+-+|.|++|-+..+-    ++..+.    ..+.|.
T Consensus       355 ~~KKkp-lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls----~~GfVN  429 (479)
T KOG0299|consen  355 LLKKKP-LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS----LVGFVN  429 (479)
T ss_pred             ecccCc-eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc----cccEEE
Confidence            875431 111111111         11267899999999999999999999999987762    232222    346788


Q ss_pred             eEEECCCCCEEEEE-cCCCcEEEE
Q 021648          233 EASFSPEGMFVISG-SGDGSVYAW  255 (309)
Q Consensus       233 ~~~~sp~g~~l~s~-s~Dg~i~vw  255 (309)
                      .++|+++|+++++| +..-.+--|
T Consensus       430 sl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  430 SLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             EEEEccCCCEEEEeccccccccee
Confidence            89999999977776 444444334

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.1e-25  Score=208.58  Aligned_cols=250  Identities=18%  Similarity=0.261  Sum_probs=197.8

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC-------C-----------ceeeeeeccccceeEEEEecC
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-------A-----------TCLKTINSKKYGVDLVCFTSH   64 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~-------~-----------~~~~~~~~~~~~v~~~~~~~~   64 (309)
                      .+-++..|.+.|+|+.|+|||++||+||.|+-|.||+-..       |           ++...+.+|...|..++|+|+
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~  140 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD  140 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence            3556789999999999999999999999999999998762       1           255678899999999999999


Q ss_pred             CCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc---
Q 021648           65 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---  141 (309)
Q Consensus        65 ~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~---  141 (309)
                      +..+++++   .|++|-+||..+.+.++++.+|+..|.++.|.|-|++|+|-+.|++|++|...+=.+.+.+..+..   
T Consensus       141 ~~~lvS~s---~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~  217 (942)
T KOG0973|consen  141 DSLLVSVS---LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP  217 (942)
T ss_pred             ccEEEEec---ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence            98888876   499999999999999999999999999999999999999999999999998655344444432211   


Q ss_pred             -----eeEEECCCCcEEEEEE--C---CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-----CC----------
Q 021648          142 -----PAAAYDDQGLVFAVAF--G---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-----GR----------  196 (309)
Q Consensus       142 -----~~~~~~~~~~~~~~~~--~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-----g~----------  196 (309)
                           .-...+|+|.++++..  .   ..+.|.+-...+    ....+-||..++.++.|+|-     ..          
T Consensus       218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk----~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK----VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             CcceeeecccCCCcCeecchhhccCCcceeEEEecCCce----eeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence                 1235578998888763  1   366776533221    12345578889999999871     11          


Q ss_pred             --EEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 021648          197 --LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       197 --~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~  261 (309)
                        .+|+|+.|+.+.||......++.  ..+......|.+++|+|||..|+.+|.||+|.+...+..+
T Consensus       294 y~i~AvgSqDrSlSVW~T~~~RPl~--vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  294 YCIAAVGSQDRSLSVWNTALPRPLF--VIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             eEEEEEecCCccEEEEecCCCCchh--hhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence              67889999999999975544443  2233456788999999999999999999999999987644

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=3e-25  Score=196.77  Aligned_cols=277  Identities=17%  Similarity=0.237  Sum_probs=209.7

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCce--eeeeeccccceeE-EEEecCCC-EEEEEcCCCCC
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDL-VCFTSHPT-TVIYSSKNGWD   77 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~--~~~~~~~~~~v~~-~~~~~~~~-~~~~~s~~g~d   77 (309)
                      ++-..+.+|+.-|..+++.+. ..++++|.|+++|+|+-...+-  .+.+.++...+.. +|+.+..+ .++.+   +.|
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g---~~D   80 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVG---GMD   80 (745)
T ss_pred             eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEee---ccc
Confidence            345678999999999887764 4889999999999998654333  2456666665555 77775333 35544   469


Q ss_pred             ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCCcEEEE
Q 021648           78 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAV  155 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  155 (309)
                      .++.+|.+.+.+++.+++||+..|-+++...++. ++|||+|.++++|-.  +++...+..+...  .+..-+...++++
T Consensus        81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTg  157 (745)
T KOG0301|consen   81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTG  157 (745)
T ss_pred             ceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEEec
Confidence            9999999999999999999999999998777775 999999999999954  4444333322222  2334466688999


Q ss_pred             EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648          156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  235 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      +.|.+|++|.-..      .+.++.+|...|+.+++=+++. +++++.||.|+.|++ +|+.+.++.   .|.+-+.+++
T Consensus       158 saDKtIklWk~~~------~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYsis  226 (745)
T KOG0301|consen  158 SADKTIKLWKGGT------LLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYSIS  226 (745)
T ss_pred             cCcceeeeccCCc------hhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeee---ccceEEEEEE
Confidence            9999999997422      2446678888999999988766 568999999999998 677776654   4667788888


Q ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeecC
Q 021648          236 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  299 (309)
Q Consensus       236 ~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~~  299 (309)
                      ..++++.++|+|+|++++||+..  +++..+..-...+.++.+-++|..++ |++|  +++|..+-
T Consensus       227 ~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvv-g~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  227 MALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVV-GGSDGRVRVFTVDK  289 (745)
T ss_pred             ecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEE-eccCceEEEEEecc
Confidence            88899999999999999999997  55555543334788888888887655 5555  67776553

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=1.2e-23  Score=181.24  Aligned_cols=266  Identities=15%  Similarity=0.189  Sum_probs=191.5

Q ss_pred             cceEecCCCcceEEEEeCCCCCEE-EEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l-~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +.+.+..|.. +.++.|+|+++.+ ++++.|+.|++||..+++.+..+..+.. +..++++++++.++++.  +.|+.++
T Consensus        23 ~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~--~~~~~l~   98 (300)
T TIGR03866        23 VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIAN--EDDNLVT   98 (300)
T ss_pred             eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEc--CCCCeEE
Confidence            4566665544 6789999999876 6778899999999999888777765433 45678999988776654  2378999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCC-cEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEE-EE-E
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFA-VA-F  157 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg-~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~  157 (309)
                      +||+.+++.+..+.. ...+.+++|+|+++.+++++.++ .+.+||.++.+....+..... ....+.+++..+. .+ .
T Consensus        99 ~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  177 (300)
T TIGR03866        99 VIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEI  177 (300)
T ss_pred             EEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCC
Confidence            999998877776653 33568899999999999888775 467789887766543322222 2345667766543 33 4


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCC---C--CCCCeEEEEccCCCEEEE-EeCCCcEEEEECCCCeEeEEeeecCCCCCcc
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGG---D--ISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  231 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~---~--~~~~~~v~~s~dg~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  231 (309)
                      ++.|++||++..+.  ...+....   .  ......++++|+++++.. .+.++.+.+||..+++.+.....    ...+
T Consensus       178 ~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~  251 (300)
T TIGR03866       178 GGTVSVIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV----GQRV  251 (300)
T ss_pred             CCEEEEEEcCccee--eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe----CCCc
Confidence            78999999876432  11111110   0  112345789999998544 45677899999988887654431    2356


Q ss_pred             ceEEECCCCCEEEEE-cCCCcEEEEECCCCceEEEeecCCCCCcEEEECC
Q 021648          232 LEASFSPEGMFVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP  280 (309)
Q Consensus       232 ~~~~~sp~g~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p  280 (309)
                      ..++|+|+|++|+++ +.++.|++||+.+++.+..+.. ...+..|+++|
T Consensus       252 ~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~  300 (300)
T TIGR03866       252 WQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-GRLPWGVVVRP  300 (300)
T ss_pred             ceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-ccccceeEeCC
Confidence            789999999999886 5699999999999999888864 46778898876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=6.8e-25  Score=185.09  Aligned_cols=246  Identities=17%  Similarity=0.263  Sum_probs=199.1

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ++.+|+||+..|..+.|+|+...++++|.|..||||.+....+......|+.+|+.+..+|+++++++++.   |++...
T Consensus       253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~---d~~w~F  329 (506)
T KOG0289|consen  253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASN---DGTWAF  329 (506)
T ss_pred             hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecC---CceEEE
Confidence            56789999999999999999999999999999999999988888888999999999999999999999986   788999


Q ss_pred             EEccCCceEEEeee--cccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEEE-
Q 021648           83 LSLHDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAF-  157 (309)
Q Consensus        83 ~d~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-  157 (309)
                      .|+.++.++.....  ..-.+++.+|+|||..|.+|..|+.+++||+.++.....+..+.  .....|+..|.+++++. 
T Consensus       330 sd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad  409 (506)
T KOG0289|consen  330 SDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD  409 (506)
T ss_pred             EEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec
Confidence            99999887655442  22358999999999999999999999999999887665554432  33567889999888775 


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC--eEeEEeeecCCCCCccceEE
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG--TLLSTYNVKPVSRNSTLEAS  235 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~  235 (309)
                      |+.|++||+|+.+  .++.+.+.. ...+.++.|.+.|++++.++.|=+|++++-.+.  ..+..+..   +.+....+.
T Consensus       410 d~~V~lwDLRKl~--n~kt~~l~~-~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~---~sg~st~v~  483 (506)
T KOG0289|consen  410 DGSVKLWDLRKLK--NFKTIQLDE-KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD---HSGLSTGVR  483 (506)
T ss_pred             CCeEEEEEehhhc--ccceeeccc-cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh---cccccceee
Confidence            5669999999765  333344332 236899999999999999998888888874332  23333322   334456789


Q ss_pred             ECCCCCEEEEEcCCCcEEEEEC
Q 021648          236 FSPEGMFVISGSGDGSVYAWSV  257 (309)
Q Consensus       236 ~sp~g~~l~s~s~Dg~i~vwd~  257 (309)
                      |....++++++|.|..++++.+
T Consensus       484 Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  484 FGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ecccceEEeeccchhheEEeec
Confidence            9999999999999999988764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=6.8e-26  Score=184.57  Aligned_cols=249  Identities=18%  Similarity=0.283  Sum_probs=192.3

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEc------CC--------Cc-------------------------
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV------TA--------AT-------------------------   44 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~------~~--------~~-------------------------   44 (309)
                      +.++.||.+.|++|+|++.+.+++|+|.|++..||..      ..        ++                         
T Consensus       183 L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR  262 (481)
T KOG0300|consen  183 LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR  262 (481)
T ss_pred             eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence            5678999999999999999999999999999999972      11        00                         


Q ss_pred             -eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEE
Q 021648           45 -CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL  123 (309)
Q Consensus        45 -~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~  123 (309)
                       ++..+.+|...|.++.|-..+++++.++   ||.+..+||+++++.+..+.||..+.+.++-+|..+.++|+|.|-+.|
T Consensus       263 vPl~~ltgH~~vV~a~dWL~gg~Q~vTaS---WDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFR  339 (481)
T KOG0300|consen  263 VPLMRLTGHRAVVSACDWLAGGQQMVTAS---WDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFR  339 (481)
T ss_pred             eeeeeeeccccceEehhhhcCcceeeeee---ccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeE
Confidence             1112455666666666667778888765   799999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCce-eeeeeeec--CceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEE
Q 021648          124 LWDQRAEK-CQGLLRVQ--GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL  200 (309)
Q Consensus       124 ~Wd~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~  200 (309)
                      +||++..- .+.++..+  ......|..+..+++++.|.+|++||++++..+-..+.+    .++++.+++|..+..++.
T Consensus       340 LWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt----dS~~NRvavs~g~~iIAi  415 (481)
T KOG0300|consen  340 LWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT----DSPANRVAVSKGHPIIAI  415 (481)
T ss_pred             eccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec----CCccceeEeecCCceEEe
Confidence            99998431 11222221  133456677778888888999999999998765433332    256888999999999999


Q ss_pred             EeCCCcEEEEECCCCeEeEEee--ecCCCCCccceEEECCC--CCEEEEEcCCCcEEEEECCCC
Q 021648          201 TTMEGHIHVLDSFRGTLLSTYN--VKPVSRNSTLEASFSPE--GMFVISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       201 ~~~dg~v~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~sp~--g~~l~s~s~Dg~i~vwd~~~~  260 (309)
                      --.+.+|++||+. |..+..+.  ....|..-+.+++|..+  ---|+++|-|..+.-|++...
T Consensus       416 PhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  416 PHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            9999999999985 33333221  11245566788999754  256889999999999998654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=2.5e-25  Score=188.65  Aligned_cols=244  Identities=16%  Similarity=0.282  Sum_probs=184.6

Q ss_pred             CCCcceEEEEeCCCC-CEEEEeeCCCcEEEEEcCCCc--------e--eeeeeccccceeEEEEecCCCEEEEEcCCCCC
Q 021648            9 DYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAAT--------C--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD   77 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~~--------~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d   77 (309)
                      -|.++|+.++..|+. .++||.+..+.|.|||..+-.        |  --.+.+|+..-..++|++.....+.++  +.|
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~--~~d  199 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG--SDD  199 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec--cCC
Confidence            589999999999854 678899999999999986321        1  125778877667789988776544443  238


Q ss_pred             ceeEEEEccCCc-------eEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCC
Q 021648           78 ESLRLLSLHDNK-------YLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ  149 (309)
Q Consensus        78 ~~i~~~d~~~~~-------~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~  149 (309)
                      ++|++||+....       .+..+.+|.+.|..++|++- ...|++++.|+.+.|||.|++... .   .          
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~-~---~----------  265 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK-P---S----------  265 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC-C---c----------
Confidence            999999986432       35678999999999999984 568999999999999999863100 0   0          


Q ss_pred             CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCe-EeEEeeecCCC
Q 021648          150 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVS  227 (309)
Q Consensus       150 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~  227 (309)
                                                 .....|..++++++|+|- +..||+++.|++|++||+++.+ .+++++   .|
T Consensus       266 ---------------------------~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e---~H  315 (422)
T KOG0264|consen  266 ---------------------------HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE---GH  315 (422)
T ss_pred             ---------------------------ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc---CC
Confidence                                       011234567899999994 5677888999999999998743 334443   56


Q ss_pred             CCccceEEECCC-CCEEEEEcCCCcEEEEECCCCce--------------EEEeecCCCCCcEEEECCCee-EEEEccce
Q 021648          228 RNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSGKE--------------VASWMSFDTEPPVIKWTPGSL-MFVTGSSE  291 (309)
Q Consensus       228 ~~~~~~~~~sp~-g~~l~s~s~Dg~i~vwd~~~~~~--------------~~~~~~~~~~v~~l~~~p~~~-~l~s~~~d  291 (309)
                      ...|..|.|||. ...|||++.|+.+.|||+..-..              +-.-.+|...|+.+.|+|+.. .++|++.|
T Consensus       316 ~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD  395 (422)
T KOG0264|consen  316 EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED  395 (422)
T ss_pred             CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC
Confidence            788999999996 57889999999999999965211              122247999999999999986 56778877


Q ss_pred             --EEEeeec
Q 021648          292 --LSFWIPD  298 (309)
Q Consensus       292 --~~~~~~~  298 (309)
                        +++|.+.
T Consensus       396 N~LqIW~~s  404 (422)
T KOG0264|consen  396 NILQIWQMA  404 (422)
T ss_pred             ceEEEeecc
Confidence              7888664

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1e-25  Score=203.94  Aligned_cols=215  Identities=21%  Similarity=0.335  Sum_probs=168.2

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEec-CCCEEEEEcCCCCCcee
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESL   80 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~d~~i   80 (309)
                      ++...|+||.+.|..|+||.++ +|+|+|-|+|||||++...+|+++|.... -|++++|+| |.+++++++.   |+.+
T Consensus       360 kP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd-fVTcVaFnPvDDryFiSGSL---D~Kv  434 (712)
T KOG0283|consen  360 KPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHND-FVTCVAFNPVDDRYFISGSL---DGKV  434 (712)
T ss_pred             cchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCC-eeEEEEecccCCCcEeeccc---ccce
Confidence            3567789999999999999864 88999999999999999999999987654 599999999 5567887765   8999


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCE
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGY  160 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (309)
                      |+|++...+.+....-+ +-|++++|.|||+..+.|+.+|.+++++.+..+.+........                   
T Consensus       435 RiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~-------------------  494 (712)
T KOG0283|consen  435 RLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH-------------------  494 (712)
T ss_pred             EEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec-------------------
Confidence            99999887766555544 8899999999999999999999999999877665433221110                   


Q ss_pred             EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                             +.++       .. + ..|+.+.|.|.. ..++..+.|.+|||+|.+...++..|.... ..+.-....|++|
T Consensus       495 -------~~Kk-------~~-~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-n~~SQ~~Asfs~D  557 (712)
T KOG0283|consen  495 -------NKKK-------KQ-G-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-NTSSQISASFSSD  557 (712)
T ss_pred             -------cCcc-------cc-C-ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-cCCcceeeeEccC
Confidence                   0000       00 1 135666666533 368888999999999998888887776432 1233456889999


Q ss_pred             CCEEEEEcCCCcEEEEECC
Q 021648          240 GMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~  258 (309)
                      |++|+++++|..|+||+..
T Consensus       558 gk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  558 GKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             CCEEEEeecCceEEEEeCC
Confidence            9999999999999999984

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=7.6e-26  Score=186.98  Aligned_cols=249  Identities=17%  Similarity=0.276  Sum_probs=192.0

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +...+|++|.|.|..|+++.  ..++|+|.|++||.|-.+. ..++++.+.. .+..+.-......++++     -..|-
T Consensus       100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~s-~~~gIdh~~~~~~FaTc-----Ge~i~  170 (433)
T KOG0268|consen  100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGKS-VYLGIDHHRKNSVFATC-----GEQID  170 (433)
T ss_pred             hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeeccc-ccccccccccccccccc-----Cceee
Confidence            34678999999999999998  6888999999999998764 4666665532 23333322223333332     24799


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEEEE-EC
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVA-FG  158 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~  158 (309)
                      +||.+...++..+.--.+.|.++.|+|- ...|++|+.|++|.++|+++..+...+.+.-+ +..++.|....+.++ .|
T Consensus       171 IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED  250 (433)
T KOG0268|consen  171 IWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANED  250 (433)
T ss_pred             ecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeecccc
Confidence            9999999999999999999999999995 45788888999999999999988766544433 345667766666665 47


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  238 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp  238 (309)
                      ..++.||+|....+ .  ....+|.+.+..|.|||.|+.+++|+.|++|+||....+.....+..+..  ..|.+|.||.
T Consensus       251 ~nlY~~DmR~l~~p-~--~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRM--q~V~~Vk~S~  325 (433)
T KOG0268|consen  251 HNLYTYDMRNLSRP-L--NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRM--QHVFCVKYSM  325 (433)
T ss_pred             ccceehhhhhhccc-c--hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhh--heeeEEEEec
Confidence            89999999987643 2  23345667889999999999999999999999999988776665543321  3578899999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEE
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGKEVA  264 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~  264 (309)
                      |.+|+++||+|+.|++|.....+++.
T Consensus       326 Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  326 DSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             cccEEEecCCCcceeeeecchhhhcC
Confidence            99999999999999999987655543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=2.1e-25  Score=181.10  Aligned_cols=249  Identities=14%  Similarity=0.270  Sum_probs=189.6

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeee--eccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      ++++|=.|..+|+++.|+|...+|++|+.|++||++|+......+.+  .....+|.++.|+|.|++++.+..   ..++
T Consensus       164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd---Hp~~  240 (430)
T KOG0640|consen  164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD---HPTL  240 (430)
T ss_pred             eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC---CCce
Confidence            67889999999999999999999999999999999999865444333  334567999999999999998864   6799


Q ss_pred             EEEEccCCceEEE---eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec-C---ceeEEECCCC-cE
Q 021648           81 RLLSLHDNKYLRY---FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-G---RPAAAYDDQG-LV  152 (309)
Q Consensus        81 ~~~d~~~~~~~~~---~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-~---~~~~~~~~~~-~~  152 (309)
                      |+||+++-++...   -.+|++.|++|.+++.++.-+|+|.||.|++||--+++|+.++... +   ..+..+..++ .+
T Consensus       241 rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi  320 (430)
T KOG0640|consen  241 RLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI  320 (430)
T ss_pred             eEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence            9999998765433   2579999999999999999999999999999999899998877432 2   2334555544 56


Q ss_pred             EEEEECCEEEEEECCCCCcCCceEEEeCCC---CCCCeEEEEccCCCEEEEEe-CCCcEEEEECCCCeEeEEeeecCCCC
Q 021648          153 FAVAFGGYIRMFDARKYEKGPFDIFSVGGD---ISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVSR  228 (309)
Q Consensus       153 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~  228 (309)
                      ++.+.|..+++|++....  .+..++-+|.   ..--....|+....+++.-. ..+.+.-||.+++..+....  ..|.
T Consensus       321 LsSG~DS~vkLWEi~t~R--~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s--lgHn  396 (430)
T KOG0640|consen  321 LSSGKDSTVKLWEISTGR--MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS--LGHN  396 (430)
T ss_pred             eecCCcceeeeeeecCCc--eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc--cCCC
Confidence            667789999999987643  2223332221   11112234555555555443 34678889999887665443  3577


Q ss_pred             CccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648          229 NSTLEASFSPEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~  258 (309)
                      +.+..+.-||.+--+.|||.|-.+|.|-.+
T Consensus       397 ~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  397 GAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             CCceEEEeCCCCCceeeecccceeeeeeec
Confidence            778888899999999999999999999865

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.3e-25  Score=174.45  Aligned_cols=247  Identities=13%  Similarity=0.187  Sum_probs=184.7

Q ss_pred             cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC---ceeeeeeccccceeEEEEec--CCCEEEEEcCCCCCceeEE
Q 021648            8 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~~~~~s~~g~d~~i~~   82 (309)
                      .+|++-|..+..+--|++|||+|.|++|||+.+...   ..+.+|.+|..+|..++|..  -|+.+++++   +|+.|-+
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs---YDgkVIi   84 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS---YDGKVII   84 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee---cCceEEE
Confidence            479999999999999999999999999999999743   45788999999999999976  455566554   6999999


Q ss_pred             EEccCCc--eEEEeeecccCEEEEEecCCC--CeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEEC
Q 021648           83 LSLHDNK--YLRYFKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  158 (309)
Q Consensus        83 ~d~~~~~--~~~~~~~h~~~v~~v~~~~~~--~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (309)
                      |..++++  ....+..|...|++|+|.|..  -.|+.++.||+|.+.+++....-...+..                   
T Consensus        85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~-------------------  145 (299)
T KOG1332|consen   85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV-------------------  145 (299)
T ss_pred             EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh-------------------
Confidence            9998875  344567899999999999964  47899999999999987654111000000                   


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC---C-----------CEEEEEeCCCcEEEEECCCCeEe--EEee
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND---G-----------RLMLLTTMEGHIHVLDSFRGTLL--STYN  222 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d---g-----------~~l~~~~~dg~v~i~d~~~~~~~--~~~~  222 (309)
                                           ..|...+++++..|-   |           +.|++|+.|..|+||+...++-+  .+++
T Consensus       146 ---------------------~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~  204 (299)
T KOG1332|consen  146 ---------------------FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE  204 (299)
T ss_pred             ---------------------hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh
Confidence                                 011122333433332   2           56999999999999998765322  2232


Q ss_pred             ecCCCCCccceEEECCCC----CEEEEEcCCCcEEEEECCCC-c--eEEEeecCCCCCcEEEECCCeeEEEEccce--EE
Q 021648          223 VKPVSRNSTLEASFSPEG----MFVISGSGDGSVYAWSVRSG-K--EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LS  293 (309)
Q Consensus       223 ~~~~~~~~~~~~~~sp~g----~~l~s~s~Dg~i~vwd~~~~-~--~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~  293 (309)
                         .|...+..++|.|.-    .+||++|.||++.||..... +  ....+..++..+.++.||+.|+.|+.++.|  ++
T Consensus       205 ---~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt  281 (299)
T KOG1332|consen  205 ---GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT  281 (299)
T ss_pred             ---hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence               466788899999964    68999999999999998632 1  122344567889999999999988777766  77


Q ss_pred             EeeecCC
Q 021648          294 FWIPDLS  300 (309)
Q Consensus       294 ~~~~~~~  300 (309)
                      +|-.++.
T Consensus       282 lwke~~~  288 (299)
T KOG1332|consen  282 LWKENVD  288 (299)
T ss_pred             EEEeCCC
Confidence            7877665

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=7.6e-25  Score=194.85  Aligned_cols=288  Identities=14%  Similarity=0.210  Sum_probs=214.5

Q ss_pred             ecCCCcceEEEEeCC-C----------CCEEEEeeCCCcEEEEEcCCCceeee---------------------------
Q 021648            7 FRDYNGRISSMDFHK-S----------SSYLVTASDDESIRLYDVTAATCLKT---------------------------   48 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~-~----------~~~l~t~s~D~~v~iWd~~~~~~~~~---------------------------   48 (309)
                      +--|+..|..|.--| +          ..-+.|+|.|+|||+||++.+..-..                           
T Consensus       365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~  444 (1080)
T KOG1408|consen  365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDAS  444 (1080)
T ss_pred             eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhcc
Confidence            445888888777544 1          13578999999999999975221110                           


Q ss_pred             ----------eeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecC---CCCeEEE
Q 021648           49 ----------INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS---SKDCFIS  115 (309)
Q Consensus        49 ----------~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~---~~~~l~s  115 (309)
                                .-....++.+++.+|+++.++++..   -+++|+||+.+-+++..+..|..+|.++.|+-   ..+.|++
T Consensus       445 ~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr---~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS  521 (1080)
T KOG1408|consen  445 AGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDR---GGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS  521 (1080)
T ss_pred             CCcccccchhhcCcccceEEEEECCCcceecccCc---cCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh
Confidence                      1122236789999999999987754   36899999999899999999999999999983   2568999


Q ss_pred             ecCCCcEEEeeCCCce-eeeeeeecC--ceeEEECCC---CcEEEEEECCEEEEEECCCCCcCCceEEEe---CCCCCCC
Q 021648          116 GSLDRTVLLWDQRAEK-CQGLLRVQG--RPAAAYDDQ---GLVFAVAFGGYIRMFDARKYEKGPFDIFSV---GGDISDA  186 (309)
Q Consensus       116 ~s~Dg~v~~Wd~~~~~-~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~  186 (309)
                      +|.|+.|.++|...+- ++.++..+.  ...+.+...   .+.++++.|..|..=-.++..  .-.++.-   ......+
T Consensus       522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~--~g~~f~r~t~t~~ktTl  599 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS--SGRLFPRHTQTLSKTTL  599 (1080)
T ss_pred             ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc--CceeccccccccccceE
Confidence            9999999999975432 112222111  112223222   356777766655432111110  1111111   1122356


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe
Q 021648          187 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW  266 (309)
Q Consensus       187 ~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~  266 (309)
                      ..++..|..+++++++.|..|+|||+.++++.+.|.....+.+..+.+...|.|.|+|+...|.++.++|..++++++.+
T Consensus       600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m  679 (1080)
T KOG1408|consen  600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM  679 (1080)
T ss_pred             EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence            77889999999999999999999999999999999876667678889999999999999999999999999999999999


Q ss_pred             ecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          267 MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       267 ~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      .+|+..|+.+.|.+|-+.|++++.|.=+++|.+
T Consensus       680 ~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  680 TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             cCcchheeeeeecccchhheeecCCceEEEEEC
Confidence            999999999999999999999999966666654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=5.2e-25  Score=188.93  Aligned_cols=229  Identities=17%  Similarity=0.272  Sum_probs=187.6

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCce--eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      .+-|.++.+.|||+.|++|+.-.++.|||+...+.  ...+......+..++.+||.+..+++..   |+.|+|||+++.
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs---dGnI~vwDLhnq  541 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS---DGNIAVWDLHNQ  541 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc---CCcEEEEEcccc
Confidence            45688999999999999999999999999975443  2334433345677889999887776654   889999999999


Q ss_pred             ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCC
Q 021648           89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK  168 (309)
Q Consensus        89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  168 (309)
                      ..++.|+||++.+.++.++.||..|.||+.|.+||.||+++++....     +                           
T Consensus       542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq-----h---------------------------  589 (705)
T KOG0639|consen  542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-----H---------------------------  589 (705)
T ss_pred             eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh-----h---------------------------
Confidence            99999999999999999999999999999999999999987653210     0                           


Q ss_pred             CCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcC
Q 021648          169 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG  248 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~  248 (309)
                          .        -.++|.++..+|++.+++.|..++.|-+.-....+. +  .. ..|..+|.++.|++.|+++++.+.
T Consensus       590 ----d--------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-y--ql-hlheScVLSlKFa~cGkwfvStGk  653 (705)
T KOG0639|consen  590 ----D--------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-Y--QL-HLHESCVLSLKFAYCGKWFVSTGK  653 (705)
T ss_pred             ----h--------hhhhheecccCCCccceeeecccCcEEEEecCCccc-e--ee-cccccEEEEEEecccCceeeecCc
Confidence                0        013566778899999999999999998876544332 2  22 246788999999999999999999


Q ss_pred             CCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          249 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       249 Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      |..+..|...-|..+-..+ .++.|.+...|-|.+++|+|+.|
T Consensus       654 DnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGd  695 (705)
T KOG0639|consen  654 DNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGD  695 (705)
T ss_pred             hhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCC
Confidence            9999999999888776654 34578999999999999999998

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=6.5e-23  Score=167.13  Aligned_cols=244  Identities=16%  Similarity=0.240  Sum_probs=190.6

Q ss_pred             eeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecC--CCcEEE
Q 021648           47 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVLL  124 (309)
Q Consensus        47 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~--Dg~v~~  124 (309)
                      +.+......+..+.|+++|..+++++.   |.++++||..++++++++..++..|..++|.-..+.++.++.  |.+||+
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~---dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSE---DDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecC---CCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            344444556899999999999998764   789999999999999999999999999999877778887776  999999


Q ss_pred             eeCCCceeeeeeeecCc--eeEEECCC-CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEE
Q 021648          125 WDQRAEKCQGLLRVQGR--PAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT  201 (309)
Q Consensus       125 Wd~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~  201 (309)
                      -++.++++++.+..+..  .....+|. ..+++++.|++|++||+|..+.  ..++.+.    .-..++|+|+|-++|++
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c--qg~l~~~----~~pi~AfDp~GLifA~~  158 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC--QGLLNLS----GRPIAAFDPEGLIFALA  158 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC--ceEEecC----CCcceeECCCCcEEEEe
Confidence            99999999888765543  33444553 5678888899999999995432  2233332    23467999999999999


Q ss_pred             eCCCcEEEEECCCC--eEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCC---cEE
Q 021648          202 TMEGHIHVLDSFRG--TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP---PVI  276 (309)
Q Consensus       202 ~~dg~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v---~~l  276 (309)
                      ...+.|++||+++-  .+..++............+.|||||++|+.....+.+++.|.-+|....++..++..-   ...
T Consensus       159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a  238 (311)
T KOG1446|consen  159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA  238 (311)
T ss_pred             cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence            98889999998752  3334444321223345578999999999999999999999999999988887776432   568


Q ss_pred             EECCCeeEEEEccceEEEeeecC
Q 021648          277 KWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       277 ~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      .|+||++.+.+|+.|.++.+|.+
T Consensus       239 ~ftPds~Fvl~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  239 TFTPDSKFVLSGSDDGTIHVWNL  261 (311)
T ss_pred             EECCCCcEEEEecCCCcEEEEEc
Confidence            89999999999999866666644

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=3.1e-23  Score=187.36  Aligned_cols=287  Identities=18%  Similarity=0.290  Sum_probs=206.0

Q ss_pred             ccceEecCCCcceEEEEeCCCCCE-EEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSY-LVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~-l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      |.+|+|+...+.|++++|..||+. ||+|+.-|.+.+||++..+.+..+. .|...+..+.|-+...-++++   +.|+.
T Consensus       235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta---~~DnS  311 (910)
T KOG1539|consen  235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTA---GADNS  311 (910)
T ss_pred             cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeec---cCCCc
Confidence            678999976799999999999975 6777788999999999877766555 676677777776655555544   34888


Q ss_pred             eEEEEccCC----ceEEEeeecccCEEEEEec-CCCCeEEEecCCCcEEEeeCCCc-------e--------eeee----
Q 021648           80 LRLLSLHDN----KYLRYFKGHHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQRAE-------K--------CQGL----  135 (309)
Q Consensus        80 i~~~d~~~~----~~~~~~~~h~~~v~~v~~~-~~~~~l~s~s~Dg~v~~Wd~~~~-------~--------~~~~----  135 (309)
                      +++|-..++    ..++.-.||..+..++.|. .++..+.+++.|++.+.+++...       +        ....    
T Consensus       312 lk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~  391 (910)
T KOG1539|consen  312 LKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTE  391 (910)
T ss_pred             eeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchh
Confidence            888865543    3566778999999999998 57889999999999988875311       0        0000    


Q ss_pred             -eeecCc-----------------------------------------------------eeEEECCCCcE-EEEEECCE
Q 021648          136 -LRVQGR-----------------------------------------------------PAAAYDDQGLV-FAVAFGGY  160 (309)
Q Consensus       136 -~~~~~~-----------------------------------------------------~~~~~~~~~~~-~~~~~~~~  160 (309)
                       ++++..                                                     .+++.+..|.+ +-+.+.|.
T Consensus       392 ~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~  471 (910)
T KOG1539|consen  392 KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT  471 (910)
T ss_pred             hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe
Confidence             000000                                                     01111222222 22223577


Q ss_pred             EEEEECCCCCcCCceEEEe---CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee--------------
Q 021648          161 IRMFDARKYEKGPFDIFSV---GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV--------------  223 (309)
Q Consensus       161 i~~~d~~~~~~~~~~~~~~---~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~--------------  223 (309)
                      |.+|++...-    ...+.   ..+...+..++...-++.+++++.+|.+..||..+..++.....              
T Consensus       472 Id~fNmQSGi----~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~  547 (910)
T KOG1539|consen  472 IDRFNMQSGI----HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD  547 (910)
T ss_pred             EEEEEcccCe----eecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence            7777765421    11111   13456788899988889999999999999999877664444310              


Q ss_pred             ------------------------cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEEC
Q 021648          224 ------------------------KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT  279 (309)
Q Consensus       224 ------------------------~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~  279 (309)
                                              ..+|.+.+.+.+|||||++|++++.|++|++||+.++..+-.+ ....+.+.+.|+
T Consensus       548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-~vd~~~~sls~S  626 (910)
T KOG1539|consen  548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-LVDSPCTSLSFS  626 (910)
T ss_pred             hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-ecCCcceeeEEC
Confidence                                    1235678889999999999999999999999999999887765 356688999999


Q ss_pred             CCeeEEEEccce---EEEee
Q 021648          280 PGSLMFVTGSSE---LSFWI  296 (309)
Q Consensus       280 p~~~~l~s~~~d---~~~~~  296 (309)
                      |+|.+|++++.|   +++|.
T Consensus       627 PngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  627 PNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             CCCCEEEEEEecCceEEEEE
Confidence            999999999987   77773

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=6.3e-24  Score=180.53  Aligned_cols=281  Identities=16%  Similarity=0.257  Sum_probs=215.7

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcC--CCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      .+.|++|.|+|...+|++|+.|++++||-++  +...++.+.....++..++|.|+|...++.+  |--.-...||+++.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s--~rrky~ysyDle~a  290 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS--GRRKYLYSYDLETA  290 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEec--ccceEEEEeecccc
Confidence            4689999999999999999999999999876  4556788888889999999999999555544  23567899999987


Q ss_pred             ce--EEEeeeccc-CEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce-eEEE-CCCCcEEEEEECCEEEE
Q 021648           89 KY--LRYFKGHHD-RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAY-DDQGLVFAVAFGGYIRM  163 (309)
Q Consensus        89 ~~--~~~~~~h~~-~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~i~~  163 (309)
                      +.  ++.+.|+.. .+.....++++++++.++..|-|.+.-..++..+..++..+.. ...+ ++...+++++.+|.|.+
T Consensus       291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            74  344556653 4566678899999999999999999988888888777776643 2333 45556788888999999


Q ss_pred             EECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC------eEeEEeeecCCCCCccceEEEC
Q 021648          164 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------TLLSTYNVKPVSRNSTLEASFS  237 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~s  237 (309)
                      ||++..  .....+...|.. .-..+|.|++|.++|+|+..|-|.|||..+.      +++.++.   .-...|..+.|+
T Consensus       371 ~nl~~~--~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d---NLtt~Itsl~Fn  444 (514)
T KOG2055|consen  371 WNLRQN--SCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD---NLTTAITSLQFN  444 (514)
T ss_pred             EecCCc--ceEEEEeecCcc-ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh---hhheeeeeeeeC
Confidence            999864  233344444432 3467899999999999999999999996432      2222111   123467789999


Q ss_pred             CCCCEEEEEcC--CCcEEEEECCCCceEEEeecCC---CCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          238 PEGMFVISGSG--DGSVYAWSVRSGKEVASWMSFD---TEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       238 p~g~~l~s~s~--Dg~i~vwd~~~~~~~~~~~~~~---~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      ||++.||.+|.  +..+++--+.+......|+.-+   +.++|++|||.+-+++.|-.+.++-+|.|
T Consensus       445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  445 HDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             cchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence            99999998876  5689998888877666666544   35789999999999999999876666654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=8.1e-24  Score=185.01  Aligned_cols=285  Identities=15%  Similarity=0.244  Sum_probs=208.3

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCC------
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW------   76 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~------   76 (309)
                      ..+.|+||++.|.+|+.+|.|.+||+||.||+||||.+.||.|++++.... .|.+++|.|.+...+.+.+.+-      
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCceEEeC
Confidence            356789999999999999999999999999999999999999999887644 5899999998875333222221      


Q ss_pred             -------------------------CceeEEEEccCC----ceEEEeeecccCEEEEEecCCCCeEEEecCC---CcEEE
Q 021648           77 -------------------------DESLRLLSLHDN----KYLRYFKGHHDRVVSLSLCSSKDCFISGSLD---RTVLL  124 (309)
Q Consensus        77 -------------------------d~~i~~~d~~~~----~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D---g~v~~  124 (309)
                                               |.++-.|.-...    .-++..-.|...|+.+.|+..|.+|++...|   ..|.+
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence                                     223334433211    1134455689999999999999999998765   47778


Q ss_pred             eeCCCceeeeeeee-cC-ceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe
Q 021648          125 WDQRAEKCQGLLRV-QG-RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT  202 (309)
Q Consensus       125 Wd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~  202 (309)
                      ..+...+.+..++. .+ ...+.|++...++.++....|++||+.....   ....+. ....+..++++|.|..|+.++
T Consensus       551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqel---vKkL~t-g~kwiS~msihp~GDnli~gs  626 (733)
T KOG0650|consen  551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQEL---VKKLLT-GSKWISSMSIHPNGDNLILGS  626 (733)
T ss_pred             EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHH---HHHHhc-CCeeeeeeeecCCCCeEEEec
Confidence            88765554443321 22 2346778888888888899999999764211   000111 113567889999999999999


Q ss_pred             CCCcEEEEECCCCe-EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC-------CC--ceEEEeecCCCC
Q 021648          203 MEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR-------SG--KEVASWMSFDTE  272 (309)
Q Consensus       203 ~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~-------~~--~~~~~~~~~~~~  272 (309)
                      .|+++..||+..+. ..+++.   .|...+.+|+|++.=..+++|+.||++.|+--.       +.  -+++.+.+|...
T Consensus       627 ~d~k~~WfDldlsskPyk~lr---~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~  703 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLR---LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT  703 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhh---hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence            99999999987543 333333   356778899999999999999999999998632       11  135667788755


Q ss_pred             ----CcEEEECCCeeEEEEccce--EEEe
Q 021648          273 ----PPVIKWTPGSLMFVTGSSE--LSFW  295 (309)
Q Consensus       273 ----v~~l~~~p~~~~l~s~~~d--~~~~  295 (309)
                          |..+.|||....|.+++.|  +++|
T Consensus       704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cccceEeecccCCCceEEecCCCceEEee
Confidence                7778899999999888877  5554

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=9.3e-23  Score=159.22  Aligned_cols=257  Identities=17%  Similarity=0.316  Sum_probs=185.3

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   89 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~   89 (309)
                      .+.+|.+++|+|.|.+.|.||..+++||--....  +..-.+|+.++.       +..++                    
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l--~~~r~~hea~~~-------pp~v~--------------------   81 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPAL--IDLRHAHEAAKQ-------PPSVL--------------------   81 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccc--cCcccccccccC-------CCeEE--------------------
Confidence            3678999999999999999999999998754321  111122322110       10111                    


Q ss_pred             eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee-----eeeecCc--eeEEE-C---CCCcEEEEEE-
Q 021648           90 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LLRVQGR--PAAAY-D---DQGLVFAVAF-  157 (309)
Q Consensus        90 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~-----~~~~~~~--~~~~~-~---~~~~~~~~~~-  157 (309)
                       -+.-+-|++.|.+++|+|+|..++|||.|++|++--+....+..     .+.++.-  ...++ +   ..+.+++.+. 
T Consensus        82 -~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga  160 (350)
T KOG0641|consen   82 -CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA  160 (350)
T ss_pred             -eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence             11234588999999999999999999999999998765544322     1222211  11222 1   2345666554 


Q ss_pred             -CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee----cCCCCCccc
Q 021648          158 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV----KPVSRNSTL  232 (309)
Q Consensus       158 -~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~~~~~~  232 (309)
                       |..|++-|....+  .  ...+.+|...+.++ ++=+|-++++|+.|.+|++||++-...+.++..    .......+.
T Consensus       161 gdc~iy~tdc~~g~--~--~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessava  235 (350)
T KOG0641|consen  161 GDCKIYITDCGRGQ--G--FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVA  235 (350)
T ss_pred             CcceEEEeecCCCC--c--ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeE
Confidence             4455555654332  2  34556666655443 667899999999999999999988777765532    122335678


Q ss_pred             eEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCCC
Q 021648          233 EASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK  301 (309)
Q Consensus       233 ~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~  301 (309)
                      +++..|.|+.|++|-+|..+.+||++.++.+..+..|++.|.++.|+|...++.+++.|.++-+.+|+.
T Consensus       236 av~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             EEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            899999999999999999999999999999999999999999999999999999999998888887753

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=7.2e-24  Score=171.15  Aligned_cols=257  Identities=17%  Similarity=0.241  Sum_probs=182.5

Q ss_pred             cCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC--EEEEEcCCCCCceeEEEE
Q 021648            8 RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         8 ~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~s~~g~d~~i~~~d   84 (309)
                      .+|.-+|.++-|=| |...+.|+|.|.++|+||..+.+....|.-+. .|..-+++|=..  .++++.  .-|..|++.|
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~-~VYshamSp~a~sHcLiA~g--tr~~~VrLCD  174 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG-KVYSHAMSPMAMSHCLIAAG--TRDVQVRLCD  174 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCc-eeehhhcChhhhcceEEEEe--cCCCcEEEEe
Confidence            36888999999988 55688999999999999999876655554332 244445555332  233322  2378999999


Q ss_pred             ccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCc-eeeeeeeecCceeEEECCCCcEEEEEECCEEE
Q 021648           85 LHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR  162 (309)
Q Consensus        85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (309)
                      +.+|.+-.+++||.+.|.+|.|+|... .|+|||.||.||+||++.. .|.                            +
T Consensus       175 i~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf----------------------------~  226 (397)
T KOG4283|consen  175 IASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF----------------------------R  226 (397)
T ss_pred             ccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccccee----------------------------E
Confidence            999999999999999999999999876 5789999999999998643 222                            2


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeE-EeeecCCCCCccceEEE---CC
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS-TYNVKPVSRNSTLEASF---SP  238 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~---sp  238 (309)
                      +.|..+.+.++... .-..+...++.++++.||.++++.+.|.++++|+..+|+... ++. +-.+ +.....++   +.
T Consensus       227 ~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g-~~~~-n~~~~~~~~~~~~  303 (397)
T KOG4283|consen  227 VLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFG-PIIH-NQTTSFAVHIQSM  303 (397)
T ss_pred             EeecccCccCcccc-ccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccc-cccc-cccccceEEEeec
Confidence            22222211111111 112345678999999999999999999999999998875322 211 1011 11111111   33


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeec
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD  298 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~  298 (309)
                      +...++--=.|+++.++++-++..+.-+..|-..+.|.+|.|+-+..-+|..|+.+.+|.
T Consensus       304 ~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~  363 (397)
T KOG4283|consen  304 DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWS  363 (397)
T ss_pred             ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccc
Confidence            434444444568899999999999999999988999999999999999999986664443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.5e-24  Score=191.18  Aligned_cols=245  Identities=20%  Similarity=0.327  Sum_probs=194.2

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC--ceeeeeeccccceeEEEE-ecCCCEEEEEcCCCCCcee
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLKTINSKKYGVDLVCF-TSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~~~~~s~~g~d~~i   80 (309)
                      ...|+.|++-|+.+...-+++.|+|+|.|.||++|++..+  -|+.++..|..-|.+++. .++...+++   +|.|+.|
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaS---gGLD~~I  142 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVAS---GGLDRKI  142 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEe---cCCCccE
Confidence            3567889999999999999999999999999999999876  789999999988999998 444444443   4779999


Q ss_pred             EEEEccCCce----------EEEee-ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCC
Q 021648           81 RLLSLHDNKY----------LRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ  149 (309)
Q Consensus        81 ~~~d~~~~~~----------~~~~~-~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~  149 (309)
                      .+||++++..          ...+. |+.+.|.+++.++.+..|++|+..+.+++||.++.+.+                
T Consensus       143 flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki----------------  206 (735)
T KOG0308|consen  143 FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI----------------  206 (735)
T ss_pred             EEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce----------------
Confidence            9999997732          23344 89999999999999999999999999999998876432                


Q ss_pred             CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCC
Q 021648          150 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  229 (309)
Q Consensus       150 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  229 (309)
                                                 ..+.||...|.++-.++||+.+++++.||+|++||+....++.++..   |..
T Consensus       207 ---------------------------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v---H~e  256 (735)
T KOG0308|consen  207 ---------------------------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV---HKE  256 (735)
T ss_pred             ---------------------------eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe---ccC
Confidence                                       22335667789999999999999999999999999988888888764   456


Q ss_pred             ccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCee--EEEEccceEEEeee
Q 021648          230 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTGSSELSFWIP  297 (309)
Q Consensus       230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~s~~~d~~~~~~  297 (309)
                      .+|++.-+|+=.++++|+.||.|+.=|+++.....-+-.-.++|..+..+-..+  .+.+..++++-|-.
T Consensus       257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL  326 (735)
T ss_pred             ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCC
Confidence            699999999999999999999999999988533222222344566666553332  45555555666643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=1.2e-23  Score=186.63  Aligned_cols=234  Identities=18%  Similarity=0.305  Sum_probs=188.5

Q ss_pred             EecCCCcceEE-EEeCC-CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            6 SFRDYNGRISS-MDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         6 ~~~~h~~~V~~-i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      .|.+|.+-|.. +++.+ ++-++++|+.|.++.+|...+.+++.++.+|+..|.+++...++. ++++   +||.++++|
T Consensus        52 ~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSg---SWD~TakvW  127 (745)
T KOG0301|consen   52 AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISG---SWDSTAKVW  127 (745)
T ss_pred             ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEec---ccccceEEe
Confidence            46678887776 88875 555799999999999999999999999999999888777666665 5654   489999999


Q ss_pred             EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc--eeEEECCCCcEEEEEECCEE
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVFAVAFGGYI  161 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i  161 (309)
                      -..  ++...+++|+..|+++...|.+ .++|||.|++|++|.-  +++..++..+..  ...+.-++..+++++.||.|
T Consensus       128 ~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~I  202 (745)
T KOG0301|consen  128 RIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSI  202 (745)
T ss_pred             cch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceE
Confidence            753  4556699999999999999987 8999999999999963  555656554332  23455677789999999999


Q ss_pred             EEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648          162 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  241 (309)
Q Consensus       162 ~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~  241 (309)
                      ++|++...     .+....+|.+-+.+++..+++..+++++.|+++++|+..  ++...+..   +..++|++.+-++|.
T Consensus       203 r~w~~~ge-----~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l---PttsiWsa~~L~NgD  272 (745)
T KOG0301|consen  203 RLWDLDGE-----VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL---PTTSIWSAKVLLNGD  272 (745)
T ss_pred             EEEeccCc-----eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec---CccceEEEEEeeCCC
Confidence            99998421     255667888889999988999999999999999999865  66666553   345788888888876


Q ss_pred             EEEEEcCCCcEEEEECCC
Q 021648          242 FVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       242 ~l~s~s~Dg~i~vwd~~~  259 (309)
                       |++|+.||.||||....
T Consensus       273 -Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  273 -IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             -EEEeccCceEEEEEecc
Confidence             57888899999999874

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=6e-24  Score=187.00  Aligned_cols=251  Identities=20%  Similarity=0.239  Sum_probs=183.5

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeee--eeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ++.+..|.++|..+.|.|-...|++++.|.++|+||+.+++++..  +.+|...|..+||.+....+++.  +|-|+.|.
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~t--GgRDg~il  170 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCT--GGRDGEIL  170 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceee--ccCCCcEE
Confidence            455678999999999999667899999999999999999988866  89999999999999987765544  35699999


Q ss_pred             EEEccCCc--------------------e-------EEEeeecccCEEE---EEecCCCCeEEEecC-CCcEEEeeCCCc
Q 021648           82 LLSLHDNK--------------------Y-------LRYFKGHHDRVVS---LSLCSSKDCFISGSL-DRTVLLWDQRAE  130 (309)
Q Consensus        82 ~~d~~~~~--------------------~-------~~~~~~h~~~v~~---v~~~~~~~~l~s~s~-Dg~v~~Wd~~~~  130 (309)
                      |||+.-..                    .       +..-+.|...|.+   +.+..|..+|||+|. |+.|++||++.+
T Consensus       171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~  250 (720)
T KOG0321|consen  171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN  250 (720)
T ss_pred             EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence            99985322                    0       1112234455555   566678889999988 999999999876


Q ss_pred             eeeeeee------e--c-----CceeEEECCC-CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCC--CeEEEEccC
Q 021648          131 KCQGLLR------V--Q-----GRPAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD--ANVVKFSND  194 (309)
Q Consensus       131 ~~~~~~~------~--~-----~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~v~~s~d  194 (309)
                      .+.....      +  .     +....+.+.. ..+++.+.|+.|++|+++.....+...+.  ++...  -..-..|||
T Consensus       251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s--g~~~~sf~vks~lSpd  328 (720)
T KOG0321|consen  251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS--GKLNSSFYVKSELSPD  328 (720)
T ss_pred             ccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc--CcccceeeeeeecCCC
Confidence            5432221      1  1     1223344443 45777778999999999887665543332  22211  122257999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC-CCEEEEEcCCCcEEEEECCCC
Q 021648          195 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       195 g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~-g~~l~s~s~Dg~i~vwd~~~~  260 (309)
                      +.++++|+.|++.++|.+.+.+.--..  ...|...|..++|.|. -.-++|+++|-+++||++..+
T Consensus       329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~--l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  329 DCSLLSGSSDEQAYIWVVSSPEAPPAL--LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CceEeccCCCcceeeeeecCccCChhh--hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            999999999999999998765533222  2245667888999884 467888899999999999664

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.92  E-value=5.6e-24  Score=183.10  Aligned_cols=239  Identities=16%  Similarity=0.283  Sum_probs=172.4

Q ss_pred             eeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc----eEEEeee-cccCEEEEEecCCCCeEEEecCCCcE
Q 021648           48 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YLRYFKG-HHDRVVSLSLCSSKDCFISGSLDRTV  122 (309)
Q Consensus        48 ~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~----~~~~~~~-h~~~v~~v~~~~~~~~l~s~s~Dg~v  122 (309)
                      .+.+|...|..+++.|.|..+++++   +|++|+.||+..-.    ..+.++- -...|+++.|++.+..|+..+.....
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs---~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGS---LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeecc---ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            4567777899999999999999764   69999999986532    1222221 12368999999999988888878889


Q ss_pred             EEeeCCCceeeeee----------eecCce----eEEECC--CCcEEEEEECCEEEEEECCCCCcCCceEE---EeCCCC
Q 021648          123 LLWDQRAEKCQGLL----------RVQGRP----AAAYDD--QGLVFAVAFGGYIRMFDARKYEKGPFDIF---SVGGDI  183 (309)
Q Consensus       123 ~~Wd~~~~~~~~~~----------~~~~~~----~~~~~~--~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~  183 (309)
                      +++|-..-......          ...++.    +.+++|  ...+++++.|+++|+||+.+.+. ...++   ..++..
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~-q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS-QLQVIKTKPAGGKR  317 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh-heeEEeeccCCCcc
Confidence            99984322222111          112222    223444  45689999999999999987553 23333   234455


Q ss_pred             CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCC--CccceEEECCCCCEEEEEcCCCcEEEEECCCC-
Q 021648          184 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR--NSTLEASFSPEGMFVISGSGDGSVYAWSVRSG-  260 (309)
Q Consensus       184 ~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~-  260 (309)
                      -.+..++|+|||+.+|+|..||.|.+||..+....-.+.....|.  ..+.++.||+||++|+|-|.|+++++||++.- 
T Consensus       318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            678899999999999999999999999975544333333333343  47899999999999999999999999999874 


Q ss_pred             ceEEEeecCCC--CCcEEEECCCeeEEEEccc
Q 021648          261 KEVASWMSFDT--EPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       261 ~~~~~~~~~~~--~v~~l~~~p~~~~l~s~~~  290 (309)
                      +++....+...  .-+.++|||+.+++++|.+
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence            44555544332  3467999999999999986

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=9.2e-23  Score=186.14  Aligned_cols=267  Identities=15%  Similarity=0.213  Sum_probs=202.9

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC-ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   87 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~   87 (309)
                      +|+...+.|+|.|+|+.|.|++.|+.||+|+...- +.-.++..+...+.  ++......+++++.   +++|.+|.+-+
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~--~ia~~s~~f~~~s~---~~tv~~y~fps   85 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVS--SIACYSNHFLTGSE---QNTVLRYKFPS   85 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeE--EEeecccceEEeec---cceEEEeeCCC
Confidence            79999999999999999999999999999987654 44445553443444  44445567887765   78999999988


Q ss_pred             CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEE-ECCEEEEE
Q 021648           88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVA-FGGYIRMF  164 (309)
Q Consensus        88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~i~~~  164 (309)
                      ++.--.+..-+-+++.++++.+|+++|.||.|-.|++-++.+...+..++...  .....|+|.+.+++++ -||.+++|
T Consensus        86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence            77655566667789999999999999999999999999987766665555433  3356788888888876 58999999


Q ss_pred             ECCCCCcCCce--EEEeCC-C-CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC
Q 021648          165 DARKYEKGPFD--IFSVGG-D-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  240 (309)
Q Consensus       165 d~~~~~~~~~~--~~~~~~-~-~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g  240 (309)
                      |+........-  +..... . ...+..++++|+|..++....|+.|.+|+....+....+.....+. .+..+.|+|+|
T Consensus       166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss-~~~~~~wsPnG  244 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS-KFSDLQWSPNG  244 (933)
T ss_pred             EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc-ceEEEEEcCCC
Confidence            98754311000  000000 0 1234567899999999999999999999999888888777654443 37789999999


Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEE
Q 021648          241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF  285 (309)
Q Consensus       241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l  285 (309)
                      +|||+++.||.|.|||+.+-+.    ......|.+++|.|+...+
T Consensus       245 ~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  245 KYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             cEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCee
Confidence            9999999999999999988332    1233578999999987543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.9e-22  Score=163.81  Aligned_cols=246  Identities=12%  Similarity=0.233  Sum_probs=176.9

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC----ceeeeeeccccceeEEEEecC--CCEEEEEcCCCCCceeEE
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~----~~~~~~~~~~~~v~~~~~~~~--~~~~~~~s~~g~d~~i~~   82 (309)
                      +|.+-|.++.|++-|+++||||.|++|+|||....    .|...++.|...+..+.+.+.  |+-+++++   +|+++++
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS---~Drtv~i   87 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS---YDRTVSI   87 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe---cCCceee
Confidence            79999999999999999999999999999996532    456678889888888888753  34455554   5999999


Q ss_pred             EEcc--CCc-------eEEEeeecccCEEEEEecCC--CCeEEEecCCCcEEEeeCCCceeee------eee----ecCc
Q 021648           83 LSLH--DNK-------YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQG------LLR----VQGR  141 (309)
Q Consensus        83 ~d~~--~~~-------~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~Dg~v~~Wd~~~~~~~~------~~~----~~~~  141 (309)
                      |.-.  +.+       ...++......|+.|.|+|.  |-.+++++.||++||++.-......      .+.    .+++
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            9752  111       24456677889999999995  5589999999999999853322111      111    0111


Q ss_pred             ---e--eEEECC---CCcEEEEEECC------EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC----CEEEEEeC
Q 021648          142 ---P--AAAYDD---QGLVFAVAFGG------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG----RLMLLTTM  203 (309)
Q Consensus       142 ---~--~~~~~~---~~~~~~~~~~~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg----~~l~~~~~  203 (309)
                         +  ++...+   ...+++++.+.      .++||......+.-..+..+.++..+|+.++|.|+-    +.||+++.
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence               1  122222   23578888765      899997543332233445666788899999999963    57899999


Q ss_pred             CCcEEEEECCC------------CeE-----eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648          204 EGHIHVLDSFR------------GTL-----LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       204 dg~v~i~d~~~------------~~~-----~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~  258 (309)
                      || |+||.+..            +..     +....-...|...++++.|+--|..|++.|.||++|+|...
T Consensus       248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            99 99999752            111     11112234577789999999999999999999999999874

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=2.4e-23  Score=183.18  Aligned_cols=279  Identities=19%  Similarity=0.307  Sum_probs=193.2

Q ss_pred             EEEeCCC---CCEEEEeeCCCcEEEEEcCCCc------eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc
Q 021648           16 SMDFHKS---SSYLVTASDDESIRLYDVTAAT------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   86 (309)
Q Consensus        16 ~i~~s~~---~~~l~t~s~D~~v~iWd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~   86 (309)
                      +..|++-   ..+|+-+-.||.|+++|.....      .++.+..|...|..+.+.|....++.++  | |.++++||++
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsas--G-DsT~r~Wdvk  130 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSAS--G-DSTIRPWDVK  130 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEcc--C-Cceeeeeeec
Confidence            4677653   3578999999999999986422      1355677888899999999333455444  3 8999999999


Q ss_pred             CCceEEE--eeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeee--------------------ee--e----
Q 021648           87 DNKYLRY--FKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQG--------------------LL--R----  137 (309)
Q Consensus        87 ~~~~~~~--~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~--------------------~~--~----  137 (309)
                      .++.+..  +.||.+.|.+++|.|. ...|++|+.||.+.|||++-.....                    .+  +    
T Consensus       131 ~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~  210 (720)
T KOG0321|consen  131 TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW  210 (720)
T ss_pred             cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence            9887766  8999999999999995 4589999999999999986432100                    00  0    


Q ss_pred             -ecC------ceeEEECCCCcEEEEEE-CCEEEEEECCCCCc----CCceEEEeCCC---CCCCeEEEEccCCCEEEEEe
Q 021648          138 -VQG------RPAAAYDDQGLVFAVAF-GGYIRMFDARKYEK----GPFDIFSVGGD---ISDANVVKFSNDGRLMLLTT  202 (309)
Q Consensus       138 -~~~------~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~----~~~~~~~~~~~---~~~~~~v~~s~dg~~l~~~~  202 (309)
                       .+.      .....+.+...+++++. |+.|++||+|+...    .+........+   .-.+.+++....|.+|.+.+
T Consensus       211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC  290 (720)
T KOG0321|consen  211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC  290 (720)
T ss_pred             ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence             000      01234445556666654 89999999986432    22221111111   23566777888889999999


Q ss_pred             CCCcEEEEECCCCeEeEEeeecCCCCCc-cceEEECCCCCEEEEEcCCCcEEEEECCCCce-EEEeecCCCCCcEEEECC
Q 021648          203 MEGHIHVLDSFRGTLLSTYNVKPVSRNS-TLEASFSPEGMFVISGSGDGSVYAWSVRSGKE-VASWMSFDTEPPVIKWTP  280 (309)
Q Consensus       203 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~~p  280 (309)
                      .|+.|+.||+.+-..--........... -..-..+||+.++++|+.|+..++|.+.+.+. ...+.+|.-.|++++|.|
T Consensus       291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence            9999999998653221111111111111 12346799999999999999999999988654 566789999999999999


Q ss_pred             Ce-eEEEEccce--EEEeee
Q 021648          281 GS-LMFVTGSSE--LSFWIP  297 (309)
Q Consensus       281 ~~-~~l~s~~~d--~~~~~~  297 (309)
                      .. .-+++.+.|  +++|..
T Consensus       371 S~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  371 SATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             ccCCCceeeccCcceEEEec
Confidence            64 345555777  666755

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=1.9e-21  Score=167.21  Aligned_cols=238  Identities=19%  Similarity=0.306  Sum_probs=181.2

Q ss_pred             EecCCCc-ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            6 SFRDYNG-RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         6 ~~~~h~~-~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      .|++++. -|.|++|.++|.. +||.++|.|.||+..+.+..++...|+.+|.++|...+|..+ +   +|.|..|-+||
T Consensus       240 ~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-S---GgKDRki~~Wd  314 (626)
T KOG2106|consen  240 IFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-S---GGKDRKIILWD  314 (626)
T ss_pred             ccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-e---cCccceEEecc
Confidence            3555544 5899999999865 599999999999998777777777999999999999888644 3   46699999998


Q ss_pred             ccCCce----------------------------------------EEEeeecccCEEEEEecCCCCeEEEecCCCcEEE
Q 021648           85 LHDNKY----------------------------------------LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL  124 (309)
Q Consensus        85 ~~~~~~----------------------------------------~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~  124 (309)
                      -.-.+.                                        ....++|.+..+.++.+|+.+.++|++.|+.+++
T Consensus       315 ~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~l  394 (626)
T KOG2106|consen  315 DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRL  394 (626)
T ss_pred             ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEE
Confidence            321110                                        1224689999999999999999999999999999


Q ss_pred             eeCCCceeeeeeeec-CceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC
Q 021648          125 WDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM  203 (309)
Q Consensus       125 Wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~  203 (309)
                      |+  ..+++...... ...+..++|.+.++.+...|...+.|..+..     ..++.-...++++++|+|+|.+||.|+.
T Consensus       395 W~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~-----lv~~~~d~~~ls~v~ysp~G~~lAvgs~  467 (626)
T KOG2106|consen  395 WN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD-----LVTIHTDNEQLSVVRYSPDGAFLAVGSH  467 (626)
T ss_pred             cc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccce-----eEEEEecCCceEEEEEcCCCCEEEEecC
Confidence            98  55555444332 2234567788844444567889999987522     3344444678999999999999999999


Q ss_pred             CCcEEEEECCC-CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEEC
Q 021648          204 EGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  257 (309)
Q Consensus       204 dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~  257 (309)
                      |+.|++|-... +..........  ..++..+.||+|++++.+-|-|-.|-.|..
T Consensus       468 d~~iyiy~Vs~~g~~y~r~~k~~--gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  468 DNHIYIYRVSANGRKYSRVGKCS--GSPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             CCeEEEEEECCCCcEEEEeeeec--CceeEEeeecCCCceEEeccCceEEEEEcc
Confidence            99999998754 44444444333  267888999999999999999999999953

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.6e-23  Score=175.00  Aligned_cols=222  Identities=19%  Similarity=0.302  Sum_probs=172.3

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc----
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH----   86 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~----   86 (309)
                      .++|.++.-+|+|.+|+.|.--+.+-+|.+.+|..+..+..|-..++++.|+.|+..+++++.   |+.|.+|++.    
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk---Dg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK---DGAVLVWLLTDLVS  157 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC---CccEEEEEEEeecc
Confidence            578999999999999998889999999999999999999999999999999999999998865   8899999874    


Q ss_pred             -----CCceEEEeeecccCEEEEEecCC--CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECC
Q 021648           87 -----DNKYLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG  159 (309)
Q Consensus        87 -----~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (309)
                           +-+++..+..|+=+|+++...+.  ..+|+|+|.|.++++||+..+.....+..+.                   
T Consensus       158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~-------------------  218 (476)
T KOG0646|consen  158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS-------------------  218 (476)
T ss_pred             cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC-------------------
Confidence                 23568889999999999988764  3489999999999999998876554443322                   


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC----------------CeEeEEeee
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR----------------GTLLSTYNV  223 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~----------------~~~~~~~~~  223 (309)
                                               .+.+++.+|-++.+-.|+.+|.|.+.++..                ++.+..+. 
T Consensus       219 -------------------------si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-  272 (476)
T KOG0646|consen  219 -------------------------SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-  272 (476)
T ss_pred             -------------------------cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec-
Confidence                                     223344444444444444444444433321                11111121 


Q ss_pred             cCCCCC--ccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCe
Q 021648          224 KPVSRN--STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS  282 (309)
Q Consensus       224 ~~~~~~--~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~  282 (309)
                        .|.+  .|.+++.+-||..|++|+.||.++|||+.+.++++++....++|+-+.+.|=.
T Consensus       273 --Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  273 --GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             --cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence              2333  78899999999999999999999999999999999988778899999987743

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.91  E-value=6.9e-22  Score=178.76  Aligned_cols=302  Identities=13%  Similarity=0.229  Sum_probs=230.7

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +++.+|++|...|+++.-+|-=..+|.|-.||+|.|+++..++.+.+++....+|+.++|..||+.+++++.  ..|.+.
T Consensus       193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~--~~G~m~  270 (910)
T KOG1539|consen  193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR--SNGDMA  270 (910)
T ss_pred             cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc--CCceEE
Confidence            578899999999999999998889999999999999999999999999987788999999999998776643  257899


Q ss_pred             EEEccCCceEEEee-ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee------------ee--eeeec---Cc--
Q 021648           82 LLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC------------QG--LLRVQ---GR--  141 (309)
Q Consensus        82 ~~d~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~------------~~--~~~~~---~~--  141 (309)
                      +||++..+.+..+. .|.+.|....|.|..-.++|++.|..+++|=+.++..            ..  .++..   ++  
T Consensus       271 ~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~i  350 (910)
T KOG1539|consen  271 FWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFI  350 (910)
T ss_pred             EEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEE
Confidence            99999988877776 7889999999999888999999999999994432110            00  00000   00  


Q ss_pred             ----------------------eeE-----------EE------CCC--------------CcEEEEE-ECCEEEEEECC
Q 021648          142 ----------------------PAA-----------AY------DDQ--------------GLVFAVA-FGGYIRMFDAR  167 (309)
Q Consensus       142 ----------------------~~~-----------~~------~~~--------------~~~~~~~-~~~~i~~~d~~  167 (309)
                                            ...           ..      .++              ..++++- .+..++.|+.+
T Consensus       351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~  430 (910)
T KOG1539|consen  351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR  430 (910)
T ss_pred             EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence                                  000           00      000              1133332 23567888888


Q ss_pred             CCCcCCceEEE--eCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEE
Q 021648          168 KYEKGPFDIFS--VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  245 (309)
Q Consensus       168 ~~~~~~~~~~~--~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s  245 (309)
                      +...+...+..  .......+.+|+.|+.|++.+.|...|+|-+|++.+|-...+|...+.|..++..++..--++.++|
T Consensus       431 n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vs  510 (910)
T KOG1539|consen  431 NKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVS  510 (910)
T ss_pred             CcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEE
Confidence            76554332211  1112346789999999999999999999999999999888888655678888999988777899999


Q ss_pred             EcCCCcEEEEECCCCce-----------------------------------------EEEeecCCCCCcEEEECCCeeE
Q 021648          246 GSGDGSVYAWSVRSGKE-----------------------------------------VASWMSFDTEPPVIKWTPGSLM  284 (309)
Q Consensus       246 ~s~Dg~i~vwd~~~~~~-----------------------------------------~~~~~~~~~~v~~l~~~p~~~~  284 (309)
                      ++.||-+..||..+...                                         ++.|.+|+..+++++|||||+.
T Consensus       511 a~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW  590 (910)
T KOG1539|consen  511 AGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW  590 (910)
T ss_pred             ccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence            99999999999876541                                         2334579999999999999999


Q ss_pred             EEEccceEEEeeecCCCccccc
Q 021648          285 FVTGSSELSFWIPDLSKLGAYV  306 (309)
Q Consensus       285 l~s~~~d~~~~~~~~~~~~~~~  306 (309)
                      +++++.|.++..||+ ..+.++
T Consensus       591 lisasmD~tIr~wDl-pt~~lI  611 (910)
T KOG1539|consen  591 LISASMDSTIRTWDL-PTGTLI  611 (910)
T ss_pred             EEEeecCCcEEEEec-cCccee
Confidence            999999977777766 444433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=3.2e-23  Score=175.95  Aligned_cols=213  Identities=18%  Similarity=0.242  Sum_probs=168.5

Q ss_pred             cceEecCCCcceEEEEeCCCC-CEEEEeeCCCcEEEEEcCCCc-------eeeeeeccccceeEEEEecCCCEEEEEcCC
Q 021648            3 VGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAAT-------CLKTINSKKYGVDLVCFTSHPTTVIYSSKN   74 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~   74 (309)
                      +...+.+|+++=.+++|++.. -.|++++.|++|.+||+....       ....+.+|...|..++|++..+.++.+.  
T Consensus       169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv--  246 (422)
T KOG0264|consen  169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV--  246 (422)
T ss_pred             CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee--
Confidence            456889999988899999854 478999999999999997322       2345788999999999999777665544  


Q ss_pred             CCCceeEEEEcc--CCceEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCc
Q 021648           75 GWDESLRLLSLH--DNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL  151 (309)
Q Consensus        75 g~d~~i~~~d~~--~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~  151 (309)
                      +.|+.+.+||..  +.+..+...+|.++|++++|+| ++..|||||.|++|.+||+|+-+.                   
T Consensus       247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-------------------  307 (422)
T KOG0264|consen  247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-------------------  307 (422)
T ss_pred             cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-------------------
Confidence            348899999998  5677888899999999999999 456899999999999999875321                   


Q ss_pred             EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeE-----------
Q 021648          152 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLS-----------  219 (309)
Q Consensus       152 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~-----------  219 (309)
                                             ..+++.+|...+..|.+||.. ..|++++.|+.+.+||+.+-....           
T Consensus       308 -----------------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE  364 (422)
T KOG0264|consen  308 -----------------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE  364 (422)
T ss_pred             -----------------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc
Confidence                                   123445566788999999976 567788899999999985421111           


Q ss_pred             EeeecCCCCCccceEEECCCC-CEEEEEcCCCcEEEEECCC
Q 021648          220 TYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       220 ~~~~~~~~~~~~~~~~~sp~g-~~l~s~s~Dg~i~vwd~~~  259 (309)
                      .+=.+.+|...|....|+|+- ..|+|+++|+.+.||.+..
T Consensus       365 llF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  365 LLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             eeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            112456788889999999975 6778899999999999863

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=7.2e-23  Score=180.77  Aligned_cols=240  Identities=17%  Similarity=0.316  Sum_probs=195.9

Q ss_pred             EEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeee
Q 021648           17 MDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG   96 (309)
Q Consensus        17 i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~   96 (309)
                      ++|++ .+.||.| .+..|-+|+..++........+...|+.+.++++|..++.+..   ++.|.+||.++.+.+..+.+
T Consensus       183 ldWss-~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~---~g~v~iwD~~~~k~~~~~~~  257 (484)
T KOG0305|consen  183 LDWSS-ANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTS---DGTVQIWDVKEQKKTRTLRG  257 (484)
T ss_pred             hhccc-CCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeec---CCeEEEEehhhccccccccC
Confidence            56774 3455555 5779999999998866665555778999999999999999875   78999999999999999999


Q ss_pred             -cccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCce
Q 021648           97 -HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD  175 (309)
Q Consensus        97 -h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  175 (309)
                       |...|-+++|.  +..+.+|+.|+.|..+|++..+....                                        
T Consensus       258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~----------------------------------------  295 (484)
T KOG0305|consen  258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS----------------------------------------  295 (484)
T ss_pred             CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh----------------------------------------
Confidence             99999999998  56899999999999999876542211                                        


Q ss_pred             EEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC-CCCEEEEE--cCCCcE
Q 021648          176 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISG--SGDGSV  252 (309)
Q Consensus       176 ~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~s~--s~Dg~i  252 (309)
                        .+.+|...|..+++++|+.++|+|+.|+.+.|||.....++..+.   .|...|-+++|+| ....||+|  +.|++|
T Consensus       296 --~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~---~H~aAVKA~awcP~q~~lLAsGGGs~D~~i  370 (484)
T KOG0305|consen  296 --TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT---EHTAAVKALAWCPWQSGLLATGGGSADRCI  370 (484)
T ss_pred             --hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe---ccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence              022345567788999999999999999999999997777776665   4677888999999 57888888  569999


Q ss_pred             EEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc----eEEEe-eecCCCccccccCC
Q 021648          253 YAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS----ELSFW-IPDLSKLGAYVGRK  309 (309)
Q Consensus       253 ~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~----d~~~~-~~~~~~~~~~~~~~  309 (309)
                      ++||+.+++.+...-. .++|..|.|+|..+.|+++..    ++.+| .|.+.++.++-||.
T Consensus       371 ~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~  431 (484)
T KOG0305|consen  371 KFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT  431 (484)
T ss_pred             EEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc
Confidence            9999999998887643 458999999999877766553    48999 56888888888874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=1.4e-22  Score=180.00  Aligned_cols=290  Identities=18%  Similarity=0.222  Sum_probs=203.1

Q ss_pred             ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee--ee-----eeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648            7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KT-----INSKKYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~--~~-----~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      +.||++-|.++.|+|.+..|+|+|.|+++.+|..++..-+  ..     ..+...+....-|+++++.+++-+   .-+.
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g---~~Gg  339 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG---RTGG  339 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEec---ccCc
Confidence            4599999999999999999999999999999987654322  12     223334466778889987777644   3567


Q ss_pred             eEEEEccCC---ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCce-eeeee---eecCce--eEEECC-C
Q 021648           80 LRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLL---RVQGRP--AAAYDD-Q  149 (309)
Q Consensus        80 i~~~d~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~-~~~~~---~~~~~~--~~~~~~-~  149 (309)
                      .++|--+..   .+.....||.+.|++|+|.|.|.+|+|.|.|.|-|++-.-..+ .-+.+   +.+++.  +..+-+ +
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~  419 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED  419 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence            999973222   2345678999999999999999999999999999998643111 11111   112221  222223 3


Q ss_pred             CcEEEEEECCEEEEEECCCC-------------------------------Cc---------------------------
Q 021648          150 GLVFAVAFGGYIRMFDARKY-------------------------------EK---------------------------  171 (309)
Q Consensus       150 ~~~~~~~~~~~i~~~d~~~~-------------------------------~~---------------------------  171 (309)
                      ..+++++...-+|+|+..+.                               .+                           
T Consensus       420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~  499 (764)
T KOG1063|consen  420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE  499 (764)
T ss_pred             ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence            34555555566677763210                               00                           


Q ss_pred             ---CCc-----------eEEEeCCCCCCCeEEEEccCCCEEEEEeCCC-----cEEEEECCCCeEeEEeeecCCCCCccc
Q 021648          172 ---GPF-----------DIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVKPVSRNSTL  232 (309)
Q Consensus       172 ---~~~-----------~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~  232 (309)
                         +++           ++..+=||-..+.+++.||+|+++|++.-..     .|++|+..+-.....+.   .|.-.|.
T Consensus       500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~---~HsLTVT  576 (764)
T KOG1063|consen  500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE---GHSLTVT  576 (764)
T ss_pred             ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec---ccceEEE
Confidence               000           0011124556789999999999999886543     58899976655554443   3556788


Q ss_pred             eEEECCCCCEEEEEcCCCcEEEEECCCCce----EEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCCCc
Q 021648          233 EASFSPEGMFVISGSGDGSVYAWSVRSGKE----VASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL  302 (309)
Q Consensus       233 ~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~----~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~  302 (309)
                      .++|||||++|+++|.|.++.+|.......    .+..+.|+.-|.+..|+|++.+|+|+|.|.++-+|..++.
T Consensus       577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            999999999999999999999999865432    3446789999999999999999999999966655555443

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=5.3e-23  Score=184.60  Aligned_cols=233  Identities=14%  Similarity=0.217  Sum_probs=182.3

Q ss_pred             eEEEEeCC-CCCEEEEeeCCCcEEEEEcCC---CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648           14 ISSMDFHK-SSSYLVTASDDESIRLYDVTA---ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   89 (309)
Q Consensus        14 V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~   89 (309)
                      +..|+|.+ +.++|||++..|.|-+||+..   .+.+..|..|.-.+..++|++....++.+.  +.|++|+.||+...+
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG--SQDg~vK~~DlR~~~  167 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG--SQDGTVKCWDLRSKK  167 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec--CCCceEEEEeeeccc
Confidence            44677875 568999999999999999986   566678889998999999998666555432  359999999999999


Q ss_pred             eEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCC
Q 021648           90 YLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK  168 (309)
Q Consensus        90 ~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  168 (309)
                      ...++.+..+.|+.|.|+| .++.|+++...|.+++||+|....-                                   
T Consensus       168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~-----------------------------------  212 (839)
T KOG0269|consen  168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC-----------------------------------  212 (839)
T ss_pred             ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH-----------------------------------
Confidence            9999999999999999998 4778999999999999998765311                                   


Q ss_pred             CCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC-CEEEEEc
Q 021648          169 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISGS  247 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g-~~l~s~s  247 (309)
                             .+.+..|...+.++.++|++.+||+||-|++|+|||..++.......+.  ...++.+|.|-|+- .+||+++
T Consensus       213 -------~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn--Tiapv~rVkWRP~~~~hLAtcs  283 (839)
T KOG0269|consen  213 -------EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN--TIAPVGRVKWRPARSYHLATCS  283 (839)
T ss_pred             -------HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--ecceeeeeeeccCccchhhhhh
Confidence                   0112235567889999999999999999999999998754433222221  23467789999975 5677775


Q ss_pred             C--CCcEEEEECCCC-ceEEEeecCCCCCcEEEECC-CeeEEEEccceE
Q 021648          248 G--DGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTP-GSLMFVTGSSEL  292 (309)
Q Consensus       248 ~--Dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~~p-~~~~l~s~~~d~  292 (309)
                      .  |-.|+|||++.. -+-.++..|...++.++|.. |...|.+++.|.
T Consensus       284 mv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~  332 (839)
T KOG0269|consen  284 MVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDG  332 (839)
T ss_pred             ccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCcc
Confidence            4  779999999764 34577888999999999966 456778888773

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.3e-21  Score=158.04  Aligned_cols=276  Identities=17%  Similarity=0.322  Sum_probs=197.9

Q ss_pred             eEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648           14 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY   93 (309)
Q Consensus        14 V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~   93 (309)
                      -.|+.|++-|.+||.|..||.|-|||+.|...-+.+.+|-.+|.++||+++|..++++|.   |..|++||+..|.+++.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~---D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR---DWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC---CceeEEEeccCCCceeE
Confidence            678999999999999999999999999998888899999999999999999999999886   88999999999998877


Q ss_pred             eeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeeeeeeec--C--ce---eEEECCCCcEEEEE-ECCEEEEE
Q 021648           94 FKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQ--G--RP---AAAYDDQGLVFAVA-FGGYIRMF  164 (309)
Q Consensus        94 ~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~--~~---~~~~~~~~~~~~~~-~~~~i~~~  164 (309)
                      +. ...+|+.+.|+|.. +.++..-.+..-.+-++..+ ....+...  +  ..   ...+++.+.++.++ ..|.+.++
T Consensus       103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~-~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~  180 (405)
T KOG1273|consen  103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP-KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY  180 (405)
T ss_pred             EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC-ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence            76 67899999999853 34444444444444454432 12222211  1  01   12355666555554 56999999


Q ss_pred             ECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-------CeEeEEeeecCCCCCcc-ceEEE
Q 021648          165 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-------GTLLSTYNVKPVSRNST-LEASF  236 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-------~~~~~~~~~~~~~~~~~-~~~~~  236 (309)
                      |..+.+-  ..-+.... ...+..+.++..|+.++..+.|..||.|+...       +++.-..+....-.... .+++|
T Consensus       181 ~a~t~e~--vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf  257 (405)
T KOG1273|consen  181 DAETLEC--VASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF  257 (405)
T ss_pred             ecchhee--eeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee
Confidence            9776431  11111111 24577888999999999999999999998642       11110000000000111 25789


Q ss_pred             CCCCCEEEEEcCC-CcEEEEECCCCceEEEeecCC-CCCcEEEECCCeeEEEEccce-EEEeee
Q 021648          237 SPEGMFVISGSGD-GSVYAWSVRSGKEVASWMSFD-TEPPVIKWTPGSLMFVTGSSE-LSFWIP  297 (309)
Q Consensus       237 sp~g~~l~s~s~D-g~i~vwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~s~~~d-~~~~~~  297 (309)
                      |.+|.|+.+++.- ..++||....|..++-+.+-. .....+.|+|-...+++-.++ +++|..
T Consensus       258 s~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~  321 (405)
T KOG1273|consen  258 SGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAV  321 (405)
T ss_pred             cCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEe
Confidence            9999999888643 489999999999999887766 457889999999988887655 888843

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=7.4e-24  Score=188.78  Aligned_cols=225  Identities=20%  Similarity=0.358  Sum_probs=181.4

Q ss_pred             CCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccC
Q 021648           21 KSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR  100 (309)
Q Consensus        21 ~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~  100 (309)
                      |-+.+++....+..+|+||...      +-.|...+.++........++   .+|+|..+.+|.+..-..+..|.+|..+
T Consensus         2 ~~~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~---~Gg~~~k~~L~~i~kp~~i~S~~~hesp   72 (825)
T KOG0267|consen    2 PGMEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLV---TGGEDEKVNLWAIGKPNAITSLTGHESP   72 (825)
T ss_pred             Ccccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeec---cCCCceeeccccccCCchhheeeccCCc
Confidence            3445667777888899999753      334444455554433333333   3577889999998877778889999999


Q ss_pred             EEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeC
Q 021648          101 VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG  180 (309)
Q Consensus       101 v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  180 (309)
                      |.+|.|+++...|++|+.||+|++||++..+.+++                                           +.
T Consensus        73 IeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt-------------------------------------------Lt  109 (825)
T KOG0267|consen   73 IESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT-------------------------------------------LT  109 (825)
T ss_pred             ceeeecCcchhhhcccccCCceeeeehhhhhhhhh-------------------------------------------hh
Confidence            99999999999999999999999999986654332                                           22


Q ss_pred             CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCC
Q 021648          181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       181 ~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~  260 (309)
                      ++..++..+.|+|-+.+.+.++.|..+.+||.+...+.+.+..   |...+..+.|+|+|+++++|++|.+++|||...|
T Consensus       110 gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s---~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag  186 (825)
T KOG0267|consen  110 GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS---HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG  186 (825)
T ss_pred             ccccCcceeeeccceEEeccccccccceehhhhccCceeeecC---CcceeEEEeecCCCceeeccCCcceeeeeccccc
Confidence            3445667888999999999999999999999997777777653   4455667899999999999999999999999999


Q ss_pred             ceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCC
Q 021648          261 KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS  300 (309)
Q Consensus       261 ~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~  300 (309)
                      +.+.+|..|.+.+..+.|+|..-++++|+.|..+-.|+|.
T Consensus       187 k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  187 KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             ccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence            9999999999999999999999999999999555555554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2e-21  Score=158.32  Aligned_cols=238  Identities=16%  Similarity=0.248  Sum_probs=179.0

Q ss_pred             eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCC--eEEEecCCCcEE
Q 021648           46 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVL  123 (309)
Q Consensus        46 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~s~Dg~v~  123 (309)
                      +..+..|..++++++.+  +.++++++.   |.+|++||+....++..+-.|.+.|+++.|.+.-.  +|++|+.||.|.
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGss---DetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~  110 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSS---DETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII  110 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCC---CCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence            45667888888888774  557776654   99999999999999999999999999999997643  899999999999


Q ss_pred             EeeCCCceeeeeeeecC--ceeEEECCCCc-EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEE
Q 021648          124 LWDQRAEKCQGLLRVQG--RPAAAYDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL  200 (309)
Q Consensus       124 ~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~  200 (309)
                      +|+...=.+...++.+.  .+.....|.+. -++++.|+.+++|++-..+.. + +..+.   .....|.|+|.|.+++.
T Consensus       111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a-~-v~~L~---~~at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA-F-VLNLK---NKATLVSWSPQGDHFVV  185 (362)
T ss_pred             EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccc-e-eeccC---CcceeeEEcCCCCEEEE
Confidence            99976655555554332  33456677775 455677899999997654422 1 22221   12345899999998887


Q ss_pred             EeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEE--
Q 021648          201 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW--  278 (309)
Q Consensus       201 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~--  278 (309)
                      .+.+ .|-+|.+.+..+......    ...+.++.| -++.++++|++|+.|++||..+..+...+.+|...|..+++  
T Consensus       186 ~~~~-~i~i~q~d~A~v~~~i~~----~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~  259 (362)
T KOG0294|consen  186 SGRN-KIDIYQLDNASVFREIEN----PKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYT  259 (362)
T ss_pred             Eecc-EEEEEecccHhHhhhhhc----cccceeeee-cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEe
Confidence            7655 456788776655544332    123444545 47889999999999999999998899999999999999883  


Q ss_pred             CCCeeEEEEccceEEEeeecC
Q 021648          279 TPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       279 ~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      .|.+.+|+|+++|..+.+|+.
T Consensus       260 ~~~~~~lvTaSSDG~I~vWd~  280 (362)
T KOG0294|consen  260 NPEHEYLVTASSDGFIKVWDI  280 (362)
T ss_pred             cCCceEEEEeccCceEEEEEc
Confidence            678899999999966655543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=2.2e-21  Score=157.20  Aligned_cols=235  Identities=14%  Similarity=0.207  Sum_probs=176.7

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCE--EEEEcCCCCCceeEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRL   82 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d~~i~~   82 (309)
                      +....|+++|.+++|+.||..+++|+.|+.+++||+.++ +...+..|..+|..+.|.+...+  +++   ++||.++|.
T Consensus        66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~T---GSWDKTlKf  141 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVT---GSWDKTLKF  141 (347)
T ss_pred             hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEe---cccccceee
Confidence            445679999999999999999999999999999999998 77788899999999999887763  333   458999999


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee-----eeeeecCceeEEECCCCcEEEEEE
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ-----GLLRVQGRPAAAYDDQGLVFAVAF  157 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  157 (309)
                      ||....+++.+++ ..+++.+++.-  ...++.+..|+.|.+++++.+..+     ..++.+.+...++.+...++.++.
T Consensus       142 WD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi  218 (347)
T KOG0647|consen  142 WDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI  218 (347)
T ss_pred             cccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee
Confidence            9999888887776 56777776653  246777778999999999765432     123334455566766666666677


Q ss_pred             CCEEEEEECCCCC-cCCceEEEeC------CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCc
Q 021648          158 GGYIRMFDARKYE-KGPFDIFSVG------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  230 (309)
Q Consensus       158 ~~~i~~~d~~~~~-~~~~~~~~~~------~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  230 (309)
                      +|.+-+..+.... ...+......      +....|++|+|.|....|++.+.||+...||-.....+.+.+   .+..+
T Consensus       219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~---~~~qp  295 (347)
T KOG0647|consen  219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE---THPQP  295 (347)
T ss_pred             cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC---cCCCc
Confidence            8888777654421 1122222111      112357889999999999999999999999987776666554   35577


Q ss_pred             cceEEECCCCCEEEEE-cCC
Q 021648          231 TLEASFSPEGMFVISG-SGD  249 (309)
Q Consensus       231 ~~~~~~sp~g~~l~s~-s~D  249 (309)
                      +.+++|+.+|.++|-+ |.|
T Consensus       296 Itcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  296 ITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             cceeEecCCCCEEEEEeecc
Confidence            8899999999988766 444

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=6.1e-21  Score=169.60  Aligned_cols=292  Identities=13%  Similarity=0.226  Sum_probs=204.0

Q ss_pred             ceEecCCCcceEEEEeCCCCC---EEEEeeCCCcEEEEEcCC--Cceeeee-----------------------------
Q 021648            4 GMSFRDYNGRISSMDFHKSSS---YLVTASDDESIRLYDVTA--ATCLKTI-----------------------------   49 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~---~l~t~s~D~~v~iWd~~~--~~~~~~~-----------------------------   49 (309)
                      ..++.||.++|+|+.|-|+.+   .++||+.|+.|++|.+..  -.++.++                             
T Consensus        47 ~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw  126 (764)
T KOG1063|consen   47 VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVW  126 (764)
T ss_pred             EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEe
Confidence            456789999999999998877   899999999999998761  1222222                             


Q ss_pred             -------------------------------------------------------------eccccceeEEEEecCCC-E
Q 021648           50 -------------------------------------------------------------NSKKYGVDLVCFTSHPT-T   67 (309)
Q Consensus        50 -------------------------------------------------------------~~~~~~v~~~~~~~~~~-~   67 (309)
                                                                                   ++|..+|..++|...+. .
T Consensus       127 ~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~  206 (764)
T KOG1063|consen  127 DKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDD  206 (764)
T ss_pred             ecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCc
Confidence                                                                         23333333344433322 2


Q ss_pred             EEEEcCCCCCceeEEEEccCCc---------------------eE----------EEeeecccCEEEEEecCCCCeEEEe
Q 021648           68 VIYSSKNGWDESLRLLSLHDNK---------------------YL----------RYFKGHHDRVVSLSLCSSKDCFISG  116 (309)
Q Consensus        68 ~~~~s~~g~d~~i~~~d~~~~~---------------------~~----------~~~~~h~~~v~~v~~~~~~~~l~s~  116 (309)
                      ++.+| .+.|..||+|.+.-+.                     ..          ..+.||.+.|.++.|+|.+..|+|+
T Consensus       207 ~~laS-~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA  285 (764)
T KOG1063|consen  207 LLLAS-SSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA  285 (764)
T ss_pred             EEEEe-cCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec
Confidence            22222 2459999999874322                     01          1134999999999999999999999


Q ss_pred             cCCCcEEEeeCCCce--eeeeeeecCc-------eeEEECCC-CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCC
Q 021648          117 SLDRTVLLWDQRAEK--CQGLLRVQGR-------PAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA  186 (309)
Q Consensus       117 s~Dg~v~~Wd~~~~~--~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  186 (309)
                      |.|+++.+|...+..  .....++...       -...+.+. ..+++-+..|..++|.... ...-......+||...|
T Consensus       286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d-~~~w~~~~~iSGH~~~V  364 (764)
T KOG1063|consen  286 SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD-KTFWTQEPVISGHVDGV  364 (764)
T ss_pred             ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC-ccceeeccccccccccc
Confidence            999999999876543  3334444321       12334444 4677778889999998322 11112233567888999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCC-----------------------------------eEeEEe----------
Q 021648          187 NVVKFSNDGRLMLLTTMEGHIHVLDSFRG-----------------------------------TLLSTY----------  221 (309)
Q Consensus       187 ~~v~~s~dg~~l~~~~~dg~v~i~d~~~~-----------------------------------~~~~~~----------  221 (309)
                      ..++++|.|++|++.+.|.+-|+|-..-.                                   +.++.|          
T Consensus       365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l  444 (764)
T KOG1063|consen  365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSL  444 (764)
T ss_pred             eeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHH
Confidence            99999999999999999998887643200                                   000000          


Q ss_pred             --------------------------------------------------------------------------eecCCC
Q 021648          222 --------------------------------------------------------------------------NVKPVS  227 (309)
Q Consensus       222 --------------------------------------------------------------------------~~~~~~  227 (309)
                                                                                                +.-.+|
T Consensus       445 ~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH  524 (764)
T KOG1063|consen  445 MAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH  524 (764)
T ss_pred             HHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC
Confidence                                                                                      000123


Q ss_pred             CCccceEEECCCCCEEEEEcCC-----CcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648          228 RNSTLEASFSPEGMFVISGSGD-----GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP  297 (309)
Q Consensus       228 ~~~~~~~~~sp~g~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~  297 (309)
                      ...+.+++.+|+|+.+||+...     ..|++|+..+...+..+..|+-.|+.++||||+++|.+++.|.++-++
T Consensus       525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~  599 (764)
T KOG1063|consen  525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY  599 (764)
T ss_pred             ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence            5567789999999999999654     379999999999999999999999999999999999999999544333

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=2.8e-21  Score=164.40  Aligned_cols=292  Identities=17%  Similarity=0.212  Sum_probs=204.9

Q ss_pred             ceEecCCCcceEEEEeCCCC--CEEEEeeCCCcEEEEEcCCCce----eeeeeccccceeEEEEecCCCEEEEEcCCCCC
Q 021648            4 GMSFRDYNGRISSMDFHKSS--SYLVTASDDESIRLYDVTAATC----LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD   77 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~--~~l~t~s~D~~v~iWd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d   77 (309)
                      ....+-|.+.|++++|+|..  +++|+|..-|.|-+||+.+.+.    +..+..|..+|..+-|+|.....++++  ++|
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss--SyD  256 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS--SYD  256 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee--ccC
Confidence            34556788999999999965  5789999999999999963322    345667888899999999776544443  369


Q ss_pred             ceeEEEEccCCceEEEeee--cccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee-eeeeeecC--ceeEEECC--CC
Q 021648           78 ESLRLLSLHDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQG--RPAAAYDD--QG  150 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~-~~~~~~~~--~~~~~~~~--~~  150 (309)
                      ++||+-|++.+..-..+..  -......++|+.+...++.+..=|...+||.+++.. ...++++.  ...+...|  +.
T Consensus       257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW  336 (498)
T ss_pred             ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence            9999999988653333322  334456778888777777777767999999987754 23333332  23344444  33


Q ss_pred             cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC----CCeEeEEeeecCC
Q 021648          151 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF----RGTLLSTYNVKPV  226 (309)
Q Consensus       151 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~----~~~~~~~~~~~~~  226 (309)
                      .+++++.|++.+|||+|+.....-++...-.|.-.|++..|||.+-.|++.+.|..|+|||..    .-+.+.++.....
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~  416 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNR  416 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCc
Confidence            566667899999999998654332344444566789999999998889999999999999972    2233322211001


Q ss_pred             C--CCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC-CCCCcE-EEECCCeeEEEEcc-ceEEEeee
Q 021648          227 S--RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-DTEPPV-IKWTPGSLMFVTGS-SELSFWIP  297 (309)
Q Consensus       227 ~--~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-~~~v~~-l~~~p~~~~l~s~~-~d~~~~~~  297 (309)
                      +  .-......|.|+-.+|+.|-.-..|-|+|-..++.+..+..- ...|++ .+|||-+..+++|+ +-.++|++
T Consensus       417 t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  417 TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence            1  123456889999999999999999999999888877775332 224444 67999888565555 44666655

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=1.3e-20  Score=162.17  Aligned_cols=288  Identities=14%  Similarity=0.190  Sum_probs=206.3

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCC--------cEEEEEcCCCceeeeeeccccceeEEEEecCC-CEEEEEcCCC
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDE--------SIRLYDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNG   75 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~--------~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~s~~g   75 (309)
                      +.+.+|+..|.|+..+||.-+++||-.-+        .+||||..+...++.+.....+|.+++|++.. ..++.....+
T Consensus        98 r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s  177 (626)
T KOG2106|consen   98 RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDS  177 (626)
T ss_pred             ccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCC
Confidence            34679999999999999988888776555        49999998888888888777789999999843 3344444456


Q ss_pred             CCceeEEEEccCCceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeee------cCceeEEECC
Q 021648           76 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRV------QGRPAAAYDD  148 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~------~~~~~~~~~~  148 (309)
                      .+..+.+||...+......+..++.|..+.|+|. .+.+++++ .+.+.+|+.+.+...+....      ....++.+.+
T Consensus       178 ~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e  256 (626)
T KOG2106|consen  178 NPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE  256 (626)
T ss_pred             CccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcC
Confidence            6888999999887766666777788999999995 45666666 78999999987765443211      1234567889


Q ss_pred             CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee------
Q 021648          149 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN------  222 (309)
Q Consensus       149 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~------  222 (309)
                      ++.++++.++|.|.+|+.+....    ......|...+.+++.-.+|.++. |+.|.+|..||-.-.+ +.+.+      
T Consensus       257 ngdviTgDS~G~i~Iw~~~~~~~----~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k-~r~~elPe~~G  330 (626)
T KOG2106|consen  257 NGDVITGDSGGNILIWSKGTNRI----SKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRK-LRETELPEQFG  330 (626)
T ss_pred             CCCEEeecCCceEEEEeCCCceE----EeEeeecCCceEEEEEecCccEee-cCccceEEeccccccc-cccccCchhcC
Confidence            99999999999999999764321    122225777899999999998766 9999999999832111 11000      


Q ss_pred             --------------------------------ecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc---------
Q 021648          223 --------------------------------VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK---------  261 (309)
Q Consensus       223 --------------------------------~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~---------  261 (309)
                                                      ....|....+.++.+|+...++|++.|+.+++|+-...+         
T Consensus       331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~  410 (626)
T KOG2106|consen  331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPA  410 (626)
T ss_pred             CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCce
Confidence                                            001123344556777877788888888888888721110         


Q ss_pred             ----------------------------eEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeecC
Q 021648          262 ----------------------------EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  299 (309)
Q Consensus       262 ----------------------------~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~~  299 (309)
                                                  .+.++...+.++++++|+|+|.+||.|+.|  ++++..+.
T Consensus       411 ~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  411 ECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA  478 (626)
T ss_pred             eEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence                                        011112236788999999999999999998  66665543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.6e-22  Score=181.46  Aligned_cols=241  Identities=20%  Similarity=0.330  Sum_probs=170.4

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC----ceeeeeeccc---cceeEEEEec-CCCEEEEEcCCCCCceeEEE
Q 021648           12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAA----TCLKTINSKK---YGVDLVCFTS-HPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~----~~~~~~~~~~---~~v~~~~~~~-~~~~~~~~s~~g~d~~i~~~   83 (309)
                      +..++|+.+++-..++.++. ..++||.+...    .|...+...+   +.+..+.+.. ..+.+++++.   .+.|.+|
T Consensus        40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~---nG~i~vW  115 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST---NGVISVW  115 (839)
T ss_pred             cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecC---CCcEEEE
Confidence            45566777888888888764 47799977532    2222222211   2233445543 3445666665   5689999


Q ss_pred             EccC---CceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECC
Q 021648           84 SLHD---NKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG  159 (309)
Q Consensus        84 d~~~---~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (309)
                      |+..   ++.+..|..|...+++++|++- .++|+|||+||+|++||++..+...+...                     
T Consensus       116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~---------------------  174 (839)
T KOG0269|consen  116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS---------------------  174 (839)
T ss_pred             ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc---------------------
Confidence            9987   6667789999999999999974 67999999999999999987653322210                     


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  238 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp  238 (309)
                                            ....++.|.|+| .+..++++...|.+++||++...+-..  ....|.+++.++.|+|
T Consensus       175 ----------------------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~--k~~AH~GpV~c~nwhP  230 (839)
T KOG0269|consen  175 ----------------------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK--KLTAHNGPVLCLNWHP  230 (839)
T ss_pred             ----------------------cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH--HhhcccCceEEEeecC
Confidence                                  113467788888 478899999999999999986443211  1235788999999999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEee-cCCCCCcEEEECCCee-EEEEccc--eEEEeeecCCC
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGKEVASWM-SFDTEPPVIKWTPGSL-MFVTGSS--ELSFWIPDLSK  301 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~-~l~s~~~--d~~~~~~~~~~  301 (309)
                      ++.+|||||.|+.|+|||+.+.+...... .-.+++.+|+|.|..+ +|++.+.  |..+.+||+.+
T Consensus       231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR  297 (839)
T KOG0269|consen  231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR  297 (839)
T ss_pred             CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence            99999999999999999998765432222 2246899999999864 6777765  44455555443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=1.3e-21  Score=158.23  Aligned_cols=208  Identities=19%  Similarity=0.334  Sum_probs=154.5

Q ss_pred             cCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCc------------ee---eeeeccccceeEEEEecCCCEEEEE
Q 021648            8 RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAAT------------CL---KTINSKKYGVDLVCFTSHPTTVIYS   71 (309)
Q Consensus         8 ~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~------------~~---~~~~~~~~~v~~~~~~~~~~~~~~~   71 (309)
                      +-|.+.|+++.+.+ .|+++++|+.||.+-+||++...            |+   +.-.+|++.|..+.|.|..+.++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            35899999999987 68999999999999999997432            21   1235788899999999988777765


Q ss_pred             cCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCC---CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECC
Q 021648           72 SKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD  148 (309)
Q Consensus        72 s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~---~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~  148 (309)
                      +  ..|.++++||.++-+....|+ ..+.|..-+++|-   ...+++|..|-.|++=|+.++.+.+.             
T Consensus       120 s--SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~-------------  183 (397)
T KOG4283|consen  120 S--SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT-------------  183 (397)
T ss_pred             c--cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee-------------
Confidence            4  369999999999877666665 5567777777762   33566777777899888877755433             


Q ss_pred             CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCE-EEEEeCCCcEEEEECCCC-eEeEEe-----
Q 021648          149 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRG-TLLSTY-----  221 (309)
Q Consensus       149 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~-l~~~~~dg~v~i~d~~~~-~~~~~~-----  221 (309)
                                                    +.||...|.+|.+||..++ |++|+.||.|++||++.. .+...+     
T Consensus       184 ------------------------------LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~  233 (397)
T KOG4283|consen  184 ------------------------------LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT  233 (397)
T ss_pred             ------------------------------eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC
Confidence                                          3455566777777776655 456777888888887643 112111     


Q ss_pred             ------eecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 021648          222 ------NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       222 ------~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~  261 (309)
                            +..+.|.+.+..++|+.||+++++++.|..+++|+..+|+
T Consensus       234 k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  234 KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence                  1123345667789999999999999999999999998875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=6.6e-22  Score=155.93  Aligned_cols=211  Identities=14%  Similarity=0.195  Sum_probs=157.7

Q ss_pred             ccceEecCCCcceEEEEeCC--CCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCE--EEEEcCCC
Q 021648            2 EVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTT--VIYSSKNG   75 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~--~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~--~~~~s~~g   75 (309)
                      .++.+|.||+++|..++|..  -|.+|||+++||.|.||.-++|.  .......|+..|.+++|.|+.-.  ++++++  
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS--  124 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS--  124 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeC--
Confidence            46788999999999999964  79999999999999999987763  23455678889999999998754  334443  


Q ss_pred             CCceeEEEEccCC---ceEEEeeecccCEEEEEecCC---C-----------CeEEEecCCCcEEEeeCCCceeeeeeee
Q 021648           76 WDESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCSS---K-----------DCFISGSLDRTVLLWDQRAEKCQGLLRV  138 (309)
Q Consensus        76 ~d~~i~~~d~~~~---~~~~~~~~h~~~v~~v~~~~~---~-----------~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~  138 (309)
                       |+.|++.++.+.   ...+....|.-.|++++|.|.   |           +.|+||+.|..|++|+..+.+.+...  
T Consensus       125 -DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~--  201 (299)
T KOG1332|consen  125 -DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER--  201 (299)
T ss_pred             -CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh--
Confidence             899999998664   234556789999999999985   4           56999999999999987655221110  


Q ss_pred             cCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC----CEEEEEeCCCcEEEEECCC
Q 021648          139 QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG----RLMLLTTMEGHIHVLDSFR  214 (309)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg----~~l~~~~~dg~v~i~d~~~  214 (309)
                                                             .+.+|..-++.++..|.-    .++++++.||+|.||-...
T Consensus       202 ---------------------------------------~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~  242 (299)
T KOG1332|consen  202 ---------------------------------------TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE  242 (299)
T ss_pred             ---------------------------------------hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence                                                   123444556667777643    6799999999999997542


Q ss_pred             C-e-EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648          215 G-T-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       215 ~-~-~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~  258 (309)
                      . + ...++ .+ .....++.++||+.|+.|+.++.|..+++|.-.
T Consensus       243 e~e~wk~tl-l~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  243 EYEPWKKTL-LE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ccCcccccc-cc-cCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            1 1 11111 11 123568899999999999999999999999864

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=6.5e-22  Score=161.47  Aligned_cols=215  Identities=19%  Similarity=0.268  Sum_probs=155.6

Q ss_pred             eEEEEccCCce-----EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee--eee----eecCceeEEECC
Q 021648           80 LRLLSLHDNKY-----LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ--GLL----RVQGRPAAAYDD  148 (309)
Q Consensus        80 i~~~d~~~~~~-----~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~--~~~----~~~~~~~~~~~~  148 (309)
                      .+-|+.+..+.     +..++||.+.|++++|++||+.|+|++.|++|++||++.-...  ..+    ....-..+.+.|
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap  142 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP  142 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence            44555544443     3467899999999999999999999999999999998642111  111    111112344544


Q ss_pred             C--CcEEEEEECCEEEEEECCCCCcCCceEEEe--------CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe
Q 021648          149 Q--GLVFAVAFGGYIRMFDARKYEKGPFDIFSV--------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL  218 (309)
Q Consensus       149 ~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~  218 (309)
                      +  ..++++..++++++|.+.+.+.+.+.....        ..+..++..+-+..++.++++++.|.+|.+|++. |.++
T Consensus       143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L  221 (420)
T KOG2096|consen  143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL  221 (420)
T ss_pred             CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee
Confidence            3  456777788999999876554443322111        1223455667778889999999999999999997 8888


Q ss_pred             EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC---Cc-----eEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648          219 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS---GK-----EVASWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~---~~-----~~~~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      ......   ......++.||+|+|+|+++----++||.+--   |+     .+-.+++|.+.|..++|+|+.+..++++.
T Consensus       222 ~~idtn---q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk  298 (420)
T KOG2096|consen  222 QSIDTN---QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK  298 (420)
T ss_pred             eeeccc---cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence            766532   22334679999999999999999999999732   22     35568899999999999999999999999


Q ss_pred             eEEEeeec
Q 021648          291 ELSFWIPD  298 (309)
Q Consensus       291 d~~~~~~~  298 (309)
                      |.++.+|+
T Consensus       299 DG~wriwd  306 (420)
T KOG2096|consen  299 DGKWRIWD  306 (420)
T ss_pred             CCcEEEee
Confidence            95544443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=2.6e-21  Score=161.02  Aligned_cols=244  Identities=16%  Similarity=0.273  Sum_probs=176.3

Q ss_pred             ecCCCcceEEEEeCCCC--CEEEEeeCCCcEEEEEcCC----------------CceeeeeeccccceeEEEEecCCCE-
Q 021648            7 FRDYNGRISSMDFHKSS--SYLVTASDDESIRLYDVTA----------------ATCLKTINSKKYGVDLVCFTSHPTT-   67 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~~--~~l~t~s~D~~v~iWd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~-   67 (309)
                      ...|.+.++-+.-++-+  .+.|+=+.-|.|.|||+..                .+++.++.+|...-..++|+|-... 
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            34688888888887755  4666667799999999742                2456677888776778999985444 


Q ss_pred             EEEEcCCCCCceeEEEEccCCce---EEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCcee
Q 021648           68 VIYSSKNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA  143 (309)
Q Consensus        68 ~~~~s~~g~d~~i~~~d~~~~~~---~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~  143 (309)
                      ++++   ..-..|++|...+|.=   ...|.+|+..|-.++|+|. ...|+|||.||+|+|||+|.+.....+       
T Consensus       227 LlsG---Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-------  296 (440)
T KOG0302|consen  227 LLSG---DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-------  296 (440)
T ss_pred             cccC---ccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee-------
Confidence            3322   2356899999887652   3446789999999999996 458999999999999999876321111       


Q ss_pred             EEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC---CeEeEE
Q 021648          144 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR---GTLLST  220 (309)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~---~~~~~~  220 (309)
                                                        ....+.++|+.+.++.+-.+|++|+.||+++|||++.   +.++..
T Consensus       297 ----------------------------------~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~  342 (440)
T KOG0302|consen  297 ----------------------------------STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT  342 (440)
T ss_pred             ----------------------------------EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee
Confidence                                              0112456899999999888999999999999999865   455566


Q ss_pred             eeecCCCCCccceEEECCC-CCEEEEEcCCCcEEEEECCCCce--------EE--------EeecCC--CCCcEEEECCC
Q 021648          221 YNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSGKE--------VA--------SWMSFD--TEPPVIKWTPG  281 (309)
Q Consensus       221 ~~~~~~~~~~~~~~~~sp~-g~~l~s~s~Dg~i~vwd~~~~~~--------~~--------~~~~~~--~~v~~l~~~p~  281 (309)
                      |..   |..+|.++.|+|. ...|+++|.|..|.+||+.-..-        ..        -+.-|.  ..+..+.|+++
T Consensus       343 fk~---Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q  419 (440)
T KOG0302|consen  343 FKY---HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ  419 (440)
T ss_pred             EEe---ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccC
Confidence            663   6678999999995 57888899999999999854211        11        122343  46788999997


Q ss_pred             ee-EEEEcc-ceEEEeee
Q 021648          282 SL-MFVTGS-SELSFWIP  297 (309)
Q Consensus       282 ~~-~l~s~~-~d~~~~~~  297 (309)
                      -. ++++.+ ....+|.+
T Consensus       420 iPG~lvsTa~dGfnVfkt  437 (440)
T KOG0302|consen  420 IPGLLVSTAIDGFNVFKT  437 (440)
T ss_pred             CCCeEEEecccceeEEEe
Confidence            43 444444 44666643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.88  E-value=9.3e-22  Score=173.37  Aligned_cols=121  Identities=17%  Similarity=0.322  Sum_probs=103.6

Q ss_pred             EecCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCceee------eeeccccceeEEEEecCCCEEEEEcCCCCCc
Q 021648            6 SFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLK------TINSKKYGVDLVCFTSHPTTVIYSSKNGWDE   78 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~   78 (309)
                      .+.+|..-|+.+.|+| +..+|||||.|..|+||.+..|....      .+.+.+-.+.++-|+|..+.++++..   .+
T Consensus        74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a---~g  150 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA---HG  150 (1012)
T ss_pred             eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc---Cc
Confidence            4678999999999999 56789999999999999998443221      23344556889999999888877654   56


Q ss_pred             eeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCC
Q 021648           79 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA  129 (309)
Q Consensus        79 ~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~  129 (309)
                      .+++||+.+++.+..+.+|.+.|-+..|+.||+.|++++.|+.|+|+|.+.
T Consensus       151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence            899999999999999999999999999999999999999999999999863

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=1.6e-20  Score=153.71  Aligned_cols=276  Identities=17%  Similarity=0.289  Sum_probs=189.8

Q ss_pred             eEEEEeCCCCCEEEEeeCCCcEEEEEcCC-----Cc--e-----eeeeec-cccceeEEEEec-----CC--CEEEEEcC
Q 021648           14 ISSMDFHKSSSYLVTASDDESIRLYDVTA-----AT--C-----LKTINS-KKYGVDLVCFTS-----HP--TTVIYSSK   73 (309)
Q Consensus        14 V~~i~~s~~~~~l~t~s~D~~v~iWd~~~-----~~--~-----~~~~~~-~~~~v~~~~~~~-----~~--~~~~~~s~   73 (309)
                      .....|+|||.-|++-+.|..+++|++..     +.  .     ..+++- ....|...|+-+     ++  ..+++++ 
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss-  130 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS-  130 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc-
Confidence            34678999999999999999999998852     10  0     001111 112245555542     22  2333333 


Q ss_pred             CCCCceeEEEEccCCceEEEeee--cccCE---EEEEecCCCCeEEEecCCCcEEEeeC-CCceeeeeeeecC-------
Q 021648           74 NGWDESLRLLSLHDNKYLRYFKG--HHDRV---VSLSLCSSKDCFISGSLDRTVLLWDQ-RAEKCQGLLRVQG-------  140 (309)
Q Consensus        74 ~g~d~~i~~~d~~~~~~~~~~~~--h~~~v---~~v~~~~~~~~l~s~s~Dg~v~~Wd~-~~~~~~~~~~~~~-------  140 (309)
                        .|.-|.+||.-+|+....+.+  |.+++   .+++|+|||..|..| ..+.|+++|+ |.++-........       
T Consensus       131 --r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~  207 (406)
T KOG2919|consen  131 --RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK  207 (406)
T ss_pred             --ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccc
Confidence              388999999999998777764  66654   568999999987765 6889999998 5554332221111       


Q ss_pred             --ceeEEECCCC-cEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC-CCcEEEEECCCC
Q 021648          141 --RPAAAYDDQG-LVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRG  215 (309)
Q Consensus       141 --~~~~~~~~~~-~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~-dg~v~i~d~~~~  215 (309)
                        ....+++|.. ..++++ +...+-|+.-...    -.++.++++...|+-+++.++|+.|.+|.- +..|..||++..
T Consensus       208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             ceeeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence              1233455533 355544 5667777654432    236677889999999999999999888765 778999999763


Q ss_pred             -eEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC-CceEEEeecCCCCCcEEEECCCeeEEEEccceEE
Q 021648          216 -TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELS  293 (309)
Q Consensus       216 -~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~  293 (309)
                       ..+..+..+....+.-+-....|+|++|++|+.||.|++||+.+ +..+..+..|+..++.++++|-..++++.+....
T Consensus       284 ~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~  363 (406)
T KOG2919|consen  284 RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRI  363 (406)
T ss_pred             cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCcee
Confidence             33333333222122222345578999999999999999999988 7778888889999999999999999999887655


Q ss_pred             Eeee
Q 021648          294 FWIP  297 (309)
Q Consensus       294 ~~~~  297 (309)
                      +-.+
T Consensus       364 f~~~  367 (406)
T KOG2919|consen  364 FKYP  367 (406)
T ss_pred             ecCC
Confidence            4444

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=7.5e-21  Score=159.19  Aligned_cols=206  Identities=15%  Similarity=0.249  Sum_probs=159.3

Q ss_pred             EecCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCC-------ceeeeeeccccceeEEEEecCCCEEEEEcCCCCC
Q 021648            6 SFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD   77 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d   77 (309)
                      .+.||.++|..++|+| +...+||||.|.+|+||.+..+       +.+..+.+|+..|..+.++|....++.++  |.|
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa--g~D  153 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA--GSD  153 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc--cCC
Confidence            3579999999999999 6678999999999999998643       34567889999999999999888777654  559


Q ss_pred             ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec-C-c-eeEEECCCCcEEE
Q 021648           78 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-G-R-PAAAYDDQGLVFA  154 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~  154 (309)
                      ++|.+||+.+|+.+-++. |.+.|.+++|+.||..|+|.+.|+.||+||.+++..+..-..+ + + .-+.+-.++.+++
T Consensus       154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t  232 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT  232 (472)
T ss_pred             ceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence            999999999999988888 9999999999999999999999999999999999877654211 1 2 2244555666888


Q ss_pred             EEE----CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCE-EEEEeCCCcEEEEECCCCe
Q 021648          155 VAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGT  216 (309)
Q Consensus       155 ~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~-l~~~~~dg~v~i~d~~~~~  216 (309)
                      +++    +..+-+||..+.+.+ .....+... +.+.-==+.+|-.+ .++|-.|+.|+-|......
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP-~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEP-IALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eccccccccceeccCcccccCc-ceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            775    478999998887654 333333221 22222224666554 4677789999999875533

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=4.7e-21  Score=164.60  Aligned_cols=258  Identities=14%  Similarity=0.258  Sum_probs=188.1

Q ss_pred             ceEEEEeCCCCCE-EEEeeCCCcEEEEEcC--CCce--eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648           13 RISSMDFHKSSSY-LVTASDDESIRLYDVT--AATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   87 (309)
Q Consensus        13 ~V~~i~~s~~~~~-l~t~s~D~~v~iWd~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~   87 (309)
                      .++++.|+....+ +++-+.|..+++|.=.  +++.  +....+.  ...|+++.....++++   +|..+.|++||+..
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~s---gG~~~~Vkiwdl~~  110 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEIS---GGQSGCVKIWDLRA  110 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeec---cCcCceeeehhhHH
Confidence            3889999876532 3555579999999643  2222  2223333  2334444444445554   45688999999998


Q ss_pred             CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec-Cce--eEEECCCCc-EEE-EEECCEEE
Q 021648           88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRP--AAAYDDQGL-VFA-VAFGGYIR  162 (309)
Q Consensus        88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-~~~--~~~~~~~~~-~~~-~~~~~~i~  162 (309)
                      ..+.+.+++|++.|+++.++-...++++++.-|.|.+..+.++.....+... +..  ...|++..+ ++. ++.+|.+.
T Consensus       111 kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt  190 (673)
T KOG4378|consen  111 KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT  190 (673)
T ss_pred             HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence            7788999999999999999988889999999999999998887665555443 222  245555443 333 34579999


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  241 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~  241 (309)
                      +||+.... +.+.  -...|..+...|||||.. .+|++-+.|.+|++||.........+..    ..+...++|+|+|.
T Consensus       191 lwDv~g~s-p~~~--~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~  263 (673)
T KOG4378|consen  191 LWDVQGMS-PIFH--ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFSECGT  263 (673)
T ss_pred             EEeccCCC-cccc--hhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeecCCce
Confidence            99986533 2221  223456678889999976 5677789999999999987665554432    24566899999999


Q ss_pred             EEEEEcCCCcEEEEECCCC-ceEEEeecCCCCCcEEEECCCe
Q 021648          242 FVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGS  282 (309)
Q Consensus       242 ~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~~p~~  282 (309)
                      +|++|...|.|+.||++.. .+++.+..|...|++|+|-|.-
T Consensus       264 ~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  264 YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            9999999999999999864 4688899999999999997764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.3e-20  Score=157.73  Aligned_cols=297  Identities=12%  Similarity=0.176  Sum_probs=203.7

Q ss_pred             EecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC------Cceeeeeec-cccceeEEEEecCCCEEEEEcCCCCCc
Q 021648            6 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------ATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDE   78 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~   78 (309)
                      .+.+|.+.|++|.|+.++++||+|+.|..+++|.++.      .++|+.... |...+.+++|.....+++++   +-++
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG---~~~~  127 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG---ERWG  127 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC---CCcc
Confidence            4578999999999999999999999999999999863      345555444 34678899998776666654   3488


Q ss_pred             eeEEEEccCCceEEEeeecc---cCEEEEEecCCCCeEEEecCCCcEEEeeCCCce-eeeeeeecCc----eeEEECC-C
Q 021648           79 SLRLLSLHDNKYLRYFKGHH---DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGR----PAAAYDD-Q  149 (309)
Q Consensus        79 ~i~~~d~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~-~~~~~~~~~~----~~~~~~~-~  149 (309)
                      +|.+.|+++.+.+.++. |.   +.|..+..+|-.+.|++.+.||.|.+||.+..+ ....+.....    ..+.+.| .
T Consensus       128 ~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             eeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            99999999988776664 44   489999999999999999999999999998765 3333322221    1233444 2


Q ss_pred             CcEEEEE-ECCEEEEEECCCCCcCCce---EEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC-eEeEEeeec
Q 021648          150 GLVFAVA-FGGYIRMFDARKYEKGPFD---IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVK  224 (309)
Q Consensus       150 ~~~~~~~-~~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~  224 (309)
                      ..++++. ..+.+.+||.|....+-+.   ...+......--.+.|+|+|..+.+---...-.+||..+. ..+-.+...
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N  286 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN  286 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence            3455444 4578999999875443221   1111111122346789999998877655555556777652 222222100


Q ss_pred             C-CC--CCccceEEECCCCCEEEEEcCCCcEEEEECCCCc-----------------------eEEEeecCCCCCcEEEE
Q 021648          225 P-VS--RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK-----------------------EVASWMSFDTEPPVIKW  278 (309)
Q Consensus       225 ~-~~--~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~-----------------------~~~~~~~~~~~v~~l~~  278 (309)
                      + ..  ...+-+++|- +.+.+++||.+-.|++|.+....                       .+..+.+|.+-++.|.|
T Consensus       287 ~~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF  365 (609)
T KOG4227|consen  287 PNGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF  365 (609)
T ss_pred             CCcceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence            0 00  1123356675 44669999999999999986421                       13346789999999999


Q ss_pred             CCCeeEEEEccce--EEEeeecCCCccccccC
Q 021648          279 TPGSLMFVTGSSE--LSFWIPDLSKLGAYVGR  308 (309)
Q Consensus       279 ~p~~~~l~s~~~d--~~~~~~~~~~~~~~~~~  308 (309)
                      +|-..+|++.+-+  .++|.+.. .++.+.|+
T Consensus       366 ~~H~~~l~SSGVE~~~KlWS~~r-~P~~~D~~  396 (609)
T KOG4227|consen  366 SQHNNLLVSSGVENSFKLWSDHR-LPWSYDLP  396 (609)
T ss_pred             cCCcceEeccchhhheecccccc-CCcccCCc
Confidence            9999999887755  78887755 34666654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.8e-20  Score=158.69  Aligned_cols=268  Identities=11%  Similarity=0.162  Sum_probs=197.8

Q ss_pred             EEEeeCCCc-EEEEEcCCCceeeeeecc-ccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEE
Q 021648           26 LVTASDDES-IRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVS  103 (309)
Q Consensus        26 l~t~s~D~~-v~iWd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~  103 (309)
                      +.+++.|.. +++||+.+|...-++++. ......+. .-.+++++++...  -..+-+|.+.........---.++|.+
T Consensus        10 ~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~-~l~~~yllsaq~~--rp~l~vw~i~k~~~~~q~~v~Pg~v~a   86 (476)
T KOG0646|consen   10 CSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLT-ALNNEYLLSAQLK--RPLLHVWEILKKDQVVQYIVLPGPVHA   86 (476)
T ss_pred             EeccCCCCcceeEEecCCCceeEEecCcccccchhhh-hhchhheeeeccc--CccccccccCchhhhhhhcccccceee
Confidence            445555665 999999999988888765 22211111 1234566666542  457889988665433322235678999


Q ss_pred             EEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee--cCceeEEECCC-CcEEEEEECCEEEEEECCCC----Cc-CCce
Q 021648          104 LSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--QGRPAAAYDDQ-GLVFAVAFGGYIRMFDARKY----EK-GPFD  175 (309)
Q Consensus       104 v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~----~~-~~~~  175 (309)
                      +.-+|+|.+|+.|.-.|.+.+|.+.++.....+..  +......+..+ ..+++++.||.|.+|.+...    .. ....
T Consensus        87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p  166 (476)
T KOG0646|consen   87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKP  166 (476)
T ss_pred             eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccc
Confidence            99999999999988999999999999987766532  33344555554 46777788999999985321    11 2334


Q ss_pred             EEEeCCCCCCCeEEEEccCC--CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEE
Q 021648          176 IFSVGGDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY  253 (309)
Q Consensus       176 ~~~~~~~~~~~~~v~~s~dg--~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~  253 (309)
                      ....+.|.-+|..+.+.+.|  ..+.+.+.|.++++||+..+.++.++..    ...+.+++..|..+.++.|++||.|.
T Consensus       167 ~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f----p~si~av~lDpae~~~yiGt~~G~I~  242 (476)
T KOG0646|consen  167 LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF----PSSIKAVALDPAERVVYIGTEEGKIF  242 (476)
T ss_pred             eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec----CCcceeEEEcccccEEEecCCcceEE
Confidence            45556677778877776654  6789999999999999999999987753    35677899999999999999999999


Q ss_pred             EEECCCC----------------ceEEEeecCCC--CCcEEEECCCeeEEEEccceEEEeeecCC
Q 021648          254 AWSVRSG----------------KEVASWMSFDT--EPPVIKWTPGSLMFVTGSSELSFWIPDLS  300 (309)
Q Consensus       254 vwd~~~~----------------~~~~~~~~~~~--~v~~l~~~p~~~~l~s~~~d~~~~~~~~~  300 (309)
                      +.++-..                +.+..+.+|..  +|+||+.+-||.+|++|+.|.++++||..
T Consensus       243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            9887432                23556778887  99999999999999999999888777764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=2.7e-20  Score=151.38  Aligned_cols=229  Identities=18%  Similarity=0.258  Sum_probs=167.4

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      .|.+++.+.+|.++ ..+++|+.|+.||.+|+.+++. ..+..|..++.+++..+-...++++   +||++|++||....
T Consensus        52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsg---sWD~~ik~wD~R~~  126 (323)
T KOG1036|consen   52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISG---SWDKTIKFWDPRNK  126 (323)
T ss_pred             ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEc---ccCccEEEEecccc
Confidence            48999999999984 5778999999999999987654 3456678889999999766667754   68999999999865


Q ss_pred             ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee-----eeeecCceeEEECCCCcEEEEEECCEEEE
Q 021648           89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LLRVQGRPAAAYDDQGLVFAVAFGGYIRM  163 (309)
Q Consensus        89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (309)
                      .....+..- +.|.++...  ++.|+.|..|..+.+||+++.....     .++++.+....+.....+++++.+|.+.+
T Consensus       127 ~~~~~~d~~-kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav  203 (323)
T KOG1036|consen  127 VVVGTFDQG-KKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV  203 (323)
T ss_pred             ccccccccC-ceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence            444444433 378877654  5788999999999999998654322     23344455556666667888888887765


Q ss_pred             EECCCC---CcCCc--eEEEeCCC----CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          164 FDARKY---EKGPF--DIFSVGGD----ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       164 ~d~~~~---~~~~~--~~~~~~~~----~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                      =.+...   ...++  .++.....    ..+|++++|+|-...|++|+.||.|.+||+...+.+..+..   ....|..+
T Consensus       204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~---~~~SI~sl  280 (323)
T KOG1036|consen  204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK---YETSISSL  280 (323)
T ss_pred             EccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC---CCCceEEE
Confidence            433221   01111  11111111    13789999999999999999999999999988887776542   23567889


Q ss_pred             EECCCCCEEEEEcC
Q 021648          235 SFSPEGMFVISGSG  248 (309)
Q Consensus       235 ~~sp~g~~l~s~s~  248 (309)
                      +|+.||..||.|+.
T Consensus       281 sfs~dG~~LAia~s  294 (323)
T KOG1036|consen  281 SFSMDGSLLAIASS  294 (323)
T ss_pred             EeccCCCeEEEEec
Confidence            99999999999964

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=4.8e-18  Score=151.42  Aligned_cols=284  Identities=26%  Similarity=0.464  Sum_probs=209.5

Q ss_pred             EecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc-eeeeeecccc-ceeEEEE-ecCCCEEEEEcCCCCCceeEE
Q 021648            6 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CLKTINSKKY-GVDLVCF-TSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      .+..|...|..+.|.+.+..++.++.|+.+.+|+...+. .+..+..... .+..+.+ .+++...+... ...|+.+++
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~  138 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS-SSLDGTVKL  138 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEecc-CCCCccEEE
Confidence            456899999999999999999999999999999998876 6666666443 4555555 66666334332 234889999


Q ss_pred             EEccC-CceEEEeeecccCEEEEEecCCCCeEEEecC-CCcEEEeeCCCceeeeeeeec--CceeEEECCCCc-EEEE-E
Q 021648           83 LSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQGL-VFAV-A  156 (309)
Q Consensus        83 ~d~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~v~~Wd~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~-~  156 (309)
                      ||+.. ......+.+|...|..+.|+|+++.+++++. |+.+++|+.........+..+  ......+.+.+. +++. +
T Consensus       139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  218 (466)
T COG2319         139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS  218 (466)
T ss_pred             EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence            99998 7788899999999999999999998888886 999999999876555555432  223345555554 5555 6


Q ss_pred             ECCEEEEEECCCCCcCCceEE-EeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeE-eEEeeecCCCCCccceE
Q 021648          157 FGGYIRMFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~  234 (309)
                      .|+.|++||.+...    ... .+.++.... ...|+|++..+++++.|+.+++||...... +..+   ..+...+..+
T Consensus       219 ~d~~i~~wd~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~  290 (466)
T COG2319         219 SDGTIRLWDLSTGK----LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSV  290 (466)
T ss_pred             CCCcEEEEECCCCc----EEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEE
Confidence            78999999876321    122 344444443 338999999999999999999999876554 3333   2345677888


Q ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCceEEEee--cCCCCCcEEEECCCeeEEEEc-cce--EEEeeec
Q 021648          235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTPGSLMFVTG-SSE--LSFWIPD  298 (309)
Q Consensus       235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~~p~~~~l~s~-~~d--~~~~~~~  298 (309)
                      .|+|++..+++++.|+.+.+||..+........  .|...+..+.|.|++..++.+ ..|  ..+|...
T Consensus       291 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  359 (466)
T COG2319         291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR  359 (466)
T ss_pred             EECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence            999999999999999999999998887766665  788789999994342444444 455  4444443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=3.9e-21  Score=165.31  Aligned_cols=234  Identities=15%  Similarity=0.215  Sum_probs=176.3

Q ss_pred             ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc---eEEEe--eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCC
Q 021648           55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---YLRYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA  129 (309)
Q Consensus        55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~---~~~~~--~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~  129 (309)
                      -|..+.++.....++++.    .+-|+|||+....   ++..+  ....+.|+++.++|||+.|++|+.-.++.|||+..
T Consensus       421 vVcAvtIS~~trhVyTgG----kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa  496 (705)
T KOG0639|consen  421 VVCAVTISNPTRHVYTGG----KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA  496 (705)
T ss_pred             EEEEEEecCCcceeEecC----CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence            355566666666666654    5679999996532   23333  23456799999999999999999999999999976


Q ss_pred             ceeeeeeeecC--ce--eEEECC-CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC
Q 021648          130 EKCQGLLRVQG--RP--AAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME  204 (309)
Q Consensus       130 ~~~~~~~~~~~--~~--~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d  204 (309)
                      ........+..  -.  ....++ ....+++..||.|.+||+++.    ..+-.+.|+...+.|+.+|+||..|.+|+.|
T Consensus       497 pTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGascIdis~dGtklWTGGlD  572 (705)
T KOG0639|consen  497 PTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISKDGTKLWTGGLD  572 (705)
T ss_pred             CCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eeeecccCCCCCceeEEecCCCceeecCCCc
Confidence            64322211111  11  122333 456778889999999999863    3456778899999999999999999999999


Q ss_pred             CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeE
Q 021648          205 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLM  284 (309)
Q Consensus       205 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~  284 (309)
                      .+||-||++.+..+..+..    ...|.++.+.|++.++|.|=+.+.+-|-.....+ -..+..|.+.|.+|.|.+-|++
T Consensus       573 ntvRcWDlregrqlqqhdF----~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkw  647 (705)
T KOG0639|consen  573 NTVRCWDLREGRQLQQHDF----SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKW  647 (705)
T ss_pred             cceeehhhhhhhhhhhhhh----hhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCce
Confidence            9999999999887765443    2456788899999999999999988888875433 3345568899999999999999


Q ss_pred             EEEccce--EEEe-eecCCC
Q 021648          285 FVTGSSE--LSFW-IPDLSK  301 (309)
Q Consensus       285 l~s~~~d--~~~~-~~~~~~  301 (309)
                      |++.+.|  +..| .|....
T Consensus       648 fvStGkDnlLnawrtPyGas  667 (705)
T KOG0639|consen  648 FVSTGKDNLLNAWRTPYGAS  667 (705)
T ss_pred             eeecCchhhhhhccCccccc
Confidence            9999998  6667 455443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=6.8e-20  Score=167.59  Aligned_cols=218  Identities=16%  Similarity=0.253  Sum_probs=172.9

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   89 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~   89 (309)
                      |...|.+++-.  +.+|++|+.|++|.+|.+.+++.-..+.....++..++++.+|+.++.++.   |..|++.++....
T Consensus        55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsd---D~~vK~~~~~D~s  129 (933)
T KOG1274|consen   55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSD---DTAVKLLNLDDSS  129 (933)
T ss_pred             cCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecC---ceeEEEEeccccc
Confidence            56667776654  459999999999999999988877667777778999999999999998875   8899999999999


Q ss_pred             eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec--------C--ceeEEECCC-CcEEEEEEC
Q 021648           90 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--------G--RPAAAYDDQ-GLVFAVAFG  158 (309)
Q Consensus        90 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--------~--~~~~~~~~~-~~~~~~~~~  158 (309)
                      ..+.+++|.++|.+|.|+|++++||+.+-||+|++||+.++.+..++..-        .  .....++|+ +.+++...+
T Consensus       130 ~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d  209 (933)
T KOG1274|consen  130 QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD  209 (933)
T ss_pred             hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC
Confidence            99999999999999999999999999999999999999988776555311        0  122466777 567777889


Q ss_pred             CEEEEEECCCCCcCCceEEEeCC--CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGG--DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      +.|++|+....+.    .+.+..  ..+.+..++|||+|+|||+++.||.|.|||..+-+. +      .....|++++|
T Consensus       210 ~~Vkvy~r~~we~----~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~------~~~~~Vc~~aw  278 (933)
T KOG1274|consen  210 NTVKVYSRKGWEL----QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H------EFKRAVCCEAW  278 (933)
T ss_pred             CeEEEEccCCcee----heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c------cccceeEEEec
Confidence            9999998765432    122221  223478899999999999999999999999987222 1      12356778899


Q ss_pred             CCCCCEE
Q 021648          237 SPEGMFV  243 (309)
Q Consensus       237 sp~g~~l  243 (309)
                      -|+..-+
T Consensus       279 ~p~~n~i  285 (933)
T KOG1274|consen  279 KPNANAI  285 (933)
T ss_pred             CCCCCee
Confidence            9987554

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.87  E-value=4e-22  Score=180.25  Aligned_cols=269  Identities=17%  Similarity=0.275  Sum_probs=191.8

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +.++.+.+|-.+|.|+.|+..|.+++||+.|+.+|||..+++.|+....+|...++.++.+.....++++|   .|..|+
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS---~D~vIr  257 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAAS---NDKVIR  257 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcc---cCceEE
Confidence            44566789999999999999999999999999999999999999999999999999999887766666554   488999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeee---eeecC---ceeEEECCCC-cEEE
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL---LRVQG---RPAAAYDDQG-LVFA  154 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~---~~~~~---~~~~~~~~~~-~~~~  154 (309)
                      +|-+..+.++..+.||++.|++++|+|--    +.+.||++++||.+-...+..   +....   .....+...+ ...+
T Consensus       258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence            99999999999999999999999999843    788999999999871111100   00000   1111222222 2333


Q ss_pred             EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648          155 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  233 (309)
Q Consensus       155 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~  233 (309)
                      +..++.-+.|....          +..+.....-+.++.|- .+.+++-.+-.+.+|++.+|.+.+....   +...+..
T Consensus       334 gs~d~ea~n~e~~~----------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g---hsd~~yv  400 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQ----------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG---HSDEVYV  400 (1113)
T ss_pred             ccCCcccccchhhH----------hhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc---cccceee
Confidence            33445444444321          11121222333333332 3455666677888999999988775543   4456677


Q ss_pred             EEECC-CCCEEEEEcCCCcEEEEECCCCceEEEe-ecCCCCCcEEEECCCeeEEEEccce
Q 021648          234 ASFSP-EGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       234 ~~~sp-~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      +.++| +.+...+++.||...|||+-.+-+++.. .+|. .+..-+||+||+.++....-
T Consensus       401 Ld~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~h  459 (1113)
T KOG0644|consen  401 LDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDH  459 (1113)
T ss_pred             eeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCC
Confidence            89999 5678889999999999999888776653 4544 56667788888776655443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=6.4e-19  Score=156.52  Aligned_cols=279  Identities=14%  Similarity=0.182  Sum_probs=211.4

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCce-eeeeeccc-cceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-LKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~-~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      ..+|.+++|+.+.+.||.+=.||.|-||++..+=+ ...+.++. ..+..+||++.+ .++++   |.++.|.-||+.+.
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~---g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSS---GLSGSITEWDLHTL  100 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEee---cCCceEEEEecccC
Confidence            46899999999999999999999999999986544 34556553 458999999544 45444   34889999999999


Q ss_pred             ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec---C-ceeEEECCCCc-EEEEEECCEEEE
Q 021648           89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---G-RPAAAYDDQGL-VFAVAFGGYIRM  163 (309)
Q Consensus        89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~---~-~~~~~~~~~~~-~~~~~~~~~i~~  163 (309)
                      +++..+..-.+.|++++.+|.+..++.|+.||.+.+.+...+.......+.   . .-...+.+++. ++.++.||.|++
T Consensus       101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri  180 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI  180 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence            999999999999999999999999999999997777777666544322221   1 22456677776 677778999999


Q ss_pred             EECCCCCcCCce---EEEeCC-CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          164 FDARKYEKGPFD---IFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       164 ~d~~~~~~~~~~---~~~~~~-~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      ||......-...   +..+.. ...-+.+|.|-.++ .+++|..-|+|.+||...+++++.+..   |...+.+++-+++
T Consensus       181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~---h~adVl~Lav~~~  256 (691)
T KOG2048|consen  181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSC---HDADVLALAVADN  256 (691)
T ss_pred             EEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhh---hhcceeEEEEcCC
Confidence            998764321100   111111 22235566666666 478999999999999999999987664   5677889999999


Q ss_pred             CCEEEEEcCCCcEEEEECCCCce----EEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          240 GMFVISGSGDGSVYAWSVRSGKE----VASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~~~~~----~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      +.++.++|.|+.|..+...+.+.    ......|...+.+++..++  .+++|+.|..+....+
T Consensus       257 ~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s  318 (691)
T KOG2048|consen  257 EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS  318 (691)
T ss_pred             CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence            99999999999999999877543    2223467888999998887  8899999977765543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=7.4e-19  Score=156.13  Aligned_cols=242  Identities=15%  Similarity=0.172  Sum_probs=181.7

Q ss_pred             cceEecCCCc-ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            3 VGMSFRDYNG-RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         3 ~~~~~~~h~~-~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +.+.+.+|.+ .|.+++|++ +.+|.|.+.+|+|.-||+.+++++..+......+..+|.+|.++.+..++.   |+.+.
T Consensus        60 ~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd---dGvl~  135 (691)
T KOG2048|consen   60 LEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCD---DGVLY  135 (691)
T ss_pred             eeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecC---CceEE
Confidence            3466777665 699999995 567889999999999999999999999888888999999999988888865   66777


Q ss_pred             EEEccCCce--EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec-----C-ce----eEEECCC
Q 021648           82 LLSLHDNKY--LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-----G-RP----AAAYDDQ  149 (309)
Q Consensus        82 ~~d~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-----~-~~----~~~~~~~  149 (309)
                      .++...++.  -..|...+++|.++.|+|++..+++|+.||.|++||...++......++     . .+    ++.+-.+
T Consensus       136 ~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd  215 (691)
T KOG2048|consen  136 DFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD  215 (691)
T ss_pred             EEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec
Confidence            777777653  2344456789999999999999999999999999999888776633322     1 22    2344567


Q ss_pred             CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeE-eEEeeecCCCC
Q 021648          150 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSR  228 (309)
Q Consensus       150 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~  228 (309)
                      +.++++.+.|+|.+||....+.    +.....+..++.+++.++++.++.+++.|++|.-|...+... -........|.
T Consensus       216 ~tI~sgDS~G~V~FWd~~~gTL----iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~  291 (691)
T KOG2048|consen  216 STIASGDSAGTVTFWDSIFGTL----IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHA  291 (691)
T ss_pred             CcEEEecCCceEEEEcccCcch----hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCc
Confidence            7788777889999999776442    234445678899999999999999999999998887655432 11111112344


Q ss_pred             CccceEEECCCCCEEEEEcCCCcEEE
Q 021648          229 NSTLEASFSPEGMFVISGSGDGSVYA  254 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~Dg~i~v  254 (309)
                      ..+.+++..++  .+++|+.|.++.+
T Consensus       292 hdvrs~av~~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  292 HDVRSMAVIEN--ALISGGRDFTLAI  315 (691)
T ss_pred             ccceeeeeecc--eEEecceeeEEEE
Confidence            55566666555  7777777766654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=8e-21  Score=165.41  Aligned_cols=259  Identities=24%  Similarity=0.323  Sum_probs=184.8

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcC--------CCceeeeeeccccceeEEEEecCCCEEEEEcCCCC
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--------AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   76 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   76 (309)
                      .++..|...|..+.|.|...-|+||+.|+++++|++.        .-+++.+|++|..+|.++++.++++.++++   |.
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg---g~  364 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG---GI  364 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee---cc
Confidence            3678899999999999999999999999999999993        235678899999999999999999988876   45


Q ss_pred             CceeEEEEccCC----------ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee---cCcee
Q 021648           77 DESLRLLSLHDN----------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV---QGRPA  143 (309)
Q Consensus        77 d~~i~~~d~~~~----------~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~---~~~~~  143 (309)
                      |++|+.|++-.+          .....+.||.+.|+.+++++....|+++|.||++|.|+.....+ .++..   .+.+.
T Consensus       365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            999999965321          12456889999999999999988999999999999999765544 12211   11111


Q ss_pred             -EEECCCCcEEEEEECCEEEEEECCCCCc-CCceEEEeC---C--CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe
Q 021648          144 -AAYDDQGLVFAVAFGGYIRMFDARKYEK-GPFDIFSVG---G--DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  216 (309)
Q Consensus       144 -~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~---~--~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~  216 (309)
                       +.+......... .+...+.+++..++. ..+.++...   +  ....++-+.-.|.+.+..++..|++|+++|-.++.
T Consensus       444 svd~~ss~~a~~~-~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  444 SVDRTSSRPAHSL-ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             eEeeccchhHhhh-hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence             111111000000 011111111111100 011111110   1  11356677788899999999999999999999998


Q ss_pred             EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCC
Q 021648          217 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT  271 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~  271 (309)
                      .+.....   |...+.++++-|+|-+|++++.|+.+++|.+....++.....|..
T Consensus       523 ~l~s~~a---~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~  574 (577)
T KOG0642|consen  523 ILHSMVA---HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK  574 (577)
T ss_pred             cchheee---ccceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence            8876543   445677899999999999999999999999988888777666653

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=2.6e-20  Score=152.62  Aligned_cols=247  Identities=19%  Similarity=0.304  Sum_probs=178.9

Q ss_pred             CCcceEEEEeCCC----CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC-EEEEEcCCCCCceeEEEE
Q 021648           10 YNGRISSMDFHKS----SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLS   84 (309)
Q Consensus        10 h~~~V~~i~~s~~----~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~i~~~d   84 (309)
                      |..+...++|+-+    ..++|.||.=|-|||-|+.++++...+.+|...+..+-+.|+.. .++++|.   |..||+|+
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk---D~svRlwn  164 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK---DHSVRLWN  164 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC---CceEEEEe
Confidence            6777888888643    35789999999999999999999999999999999999999765 4555554   89999999


Q ss_pred             ccCCceEEEee---ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee-------------cC--ceeEEE
Q 021648           85 LHDNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-------------QG--RPAAAY  146 (309)
Q Consensus        85 ~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~-------------~~--~~~~~~  146 (309)
                      +++..++..|.   ||.+.|.+++|++++.+++|++.|-++++|++...+....+..             +.  ...-.+
T Consensus       165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f  244 (385)
T KOG1034|consen  165 IQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF  244 (385)
T ss_pred             ccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence            99999998875   6999999999999999999999999999999874332111110             00  000000


Q ss_pred             -----C---------CCCcEEEEEECCEEEEEECCCCCcC------Cce----EEEeCCCCCCCeE--EEEccCCCEEEE
Q 021648          147 -----D---------DQGLVFAVAFGGYIRMFDARKYEKG------PFD----IFSVGGDISDANV--VKFSNDGRLMLL  200 (309)
Q Consensus       147 -----~---------~~~~~~~~~~~~~i~~~d~~~~~~~------~~~----~~~~~~~~~~~~~--v~~s~dg~~l~~  200 (309)
                           .         -...+++-+-++.|..|..-+....      +-.    +....-...++.-  .+|.|-+++||.
T Consensus       245 st~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~  324 (385)
T KOG1034|consen  245 STTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL  324 (385)
T ss_pred             cccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence                 0         0123454455789999987332211      100    0011111223333  356777899999


Q ss_pred             EeCCCcEEEEECCCCeEe-EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          201 TTMEGHIHVLDSFRGTLL-STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       201 ~~~dg~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      |...|.|++||++..+.. .+-..++.....|...+||-||..|+...+|++|--||..+
T Consensus       325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~  384 (385)
T KOG1034|consen  325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS  384 (385)
T ss_pred             ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence            999999999999876552 22223444556778899999999999999999999999743

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.85  E-value=2.7e-20  Score=166.13  Aligned_cols=242  Identities=15%  Similarity=0.236  Sum_probs=184.8

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCC--CEEEEEcCCCCCceeEEEEccCC
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP--TTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      ...|.+++.+|+|++||+|..-|++||||+...+.+..++.|...|.++.++...  ..++++  ++-|.-|-+||+..+
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS--asrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS--ASRDRLIHVYDVKRN  536 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh--ccCCceEEEEecccc
Confidence            4578999999999999999999999999999988899999999999999998632  233332  234899999998764


Q ss_pred             -ceEEEeeecccCEEEEEecCCC--CeEEEecCCCcEEEeeCCC---ceeeeeeeec--Cce---eEEECCC-CcEEEEE
Q 021648           89 -KYLRYFKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLWDQRA---EKCQGLLRVQ--GRP---AAAYDDQ-GLVFAVA  156 (309)
Q Consensus        89 -~~~~~~~~h~~~v~~v~~~~~~--~~l~s~s~Dg~v~~Wd~~~---~~~~~~~~~~--~~~---~~~~~~~-~~~~~~~  156 (309)
                       ..+.++.+|...|++|.|...|  ...+|++.|+.|.+=-.+.   +... ....+  .+.   -+..++. +.+++++
T Consensus       537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f-~r~t~t~~ktTlYDm~Vdp~~k~v~t~c  615 (1080)
T KOG1408|consen  537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF-PRHTQTLSKTTLYDMAVDPTSKLVVTVC  615 (1080)
T ss_pred             cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec-cccccccccceEEEeeeCCCcceEEEEe
Confidence             4577899999999999998765  6899999999987632210   1111 00001  111   1233443 4567778


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      .|..|++||+.+.++.+ ......++..+..-+...|.|-|+++...|+++.++|..+|+++....   .|...|..+.|
T Consensus       616 QDrnirif~i~sgKq~k-~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~---GHsE~VTG~kF  691 (1080)
T KOG1408|consen  616 QDRNIRIFDIESGKQVK-SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT---GHSEAVTGVKF  691 (1080)
T ss_pred             cccceEEEeccccceee-eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc---Ccchheeeeee
Confidence            89999999998765321 122233344556677899999999999999999999999999987654   45567889999


Q ss_pred             CCCCCEEEEEcCCCcEEEEECCC
Q 021648          237 SPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       237 sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      ++|-++|++++.||+|.||.+..
T Consensus       692 ~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  692 LNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cccchhheeecCCceEEEEECch
Confidence            99999999999999999999865

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.85  E-value=1.3e-19  Score=154.22  Aligned_cols=260  Identities=13%  Similarity=0.160  Sum_probs=178.6

Q ss_pred             EcCCCceeeeeeccccceeEEEEecCCC-EEEEEcCCCCCceeEEEEccCC----ceEEEeeecccCEEEEEecCC-CCe
Q 021648           39 DVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDN----KYLRYFKGHHDRVVSLSLCSS-KDC  112 (309)
Q Consensus        39 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~i~~~d~~~~----~~~~~~~~h~~~v~~v~~~~~-~~~  112 (309)
                      |+.+-.....+.-+...+.+++|+|..+ .++++.  ..-++|-+||+.+.    ..+..+..|..+|.++.|+|. ...
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~G--dK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~  249 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVG--DKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQ  249 (498)
T ss_pred             ccccceecceeEecccceEEEEecccCcceEEEEc--cCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhh
Confidence            3334444555666777899999999877 444432  22579999999432    246677889999999999984 568


Q ss_pred             EEEecCCCcEEEeeCCCceeeeeeeecCceeEE----E-CCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCe
Q 021648          113 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA----Y-DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDAN  187 (309)
Q Consensus       113 l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  187 (309)
                      +++.|.||+||+=|++......++.........    + .....++.+..=|...+||.|.... .  ...+..|...|.
T Consensus       250 i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s-~--~~~~~lh~kKI~  326 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS-E--YENLRLHKKKIT  326 (498)
T ss_pred             eeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc-c--chhhhhhhcccc
Confidence            999999999999999877655444442221111    1 1334555555445899999986432 1  223333445899


Q ss_pred             EEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEE-eeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC----CCc
Q 021648          188 VVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR----SGK  261 (309)
Q Consensus       188 ~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~----~~~  261 (309)
                      .++++|.. .++++++.|++++|||++.-..... +.....|...|.++.|||+|..|+|-+.|..|+|||..    .-+
T Consensus       327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~  406 (498)
T KOG4328|consen  327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE  406 (498)
T ss_pred             eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC
Confidence            99999976 6788999999999999875332221 11122366788899999998889999999999999994    333


Q ss_pred             eEEEeecCCCC------CcEEEECCCeeEEEEccc--eEEEeeecCCC-ccc
Q 021648          262 EVASWMSFDTE------PPVIKWTPGSLMFVTGSS--ELSFWIPDLSK-LGA  304 (309)
Q Consensus       262 ~~~~~~~~~~~------v~~l~~~p~~~~l~s~~~--d~~~~~~~~~~-~~~  304 (309)
                      +..++ .|+..      +...+|.|+..+++.|-.  .+.++...+++ +.+
T Consensus       407 p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e  457 (498)
T KOG4328|consen  407 PLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE  457 (498)
T ss_pred             cccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence            34443 34322      244789999999999875  36666666655 444

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=6.9e-20  Score=152.60  Aligned_cols=203  Identities=18%  Similarity=0.310  Sum_probs=145.4

Q ss_pred             ceeEEEEecCCCEEEEEcCCCCCceeEEEEccC----------------CceEEEeeecccCEEEEEecCC-CCeEEEec
Q 021648           55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----------------NKYLRYFKGHHDRVVSLSLCSS-KDCFISGS  117 (309)
Q Consensus        55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~----------------~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s  117 (309)
                      .+..+...+-++..++++- ...+.|.|||+..                .+++.++.+|+..=.+++|+|- ...|+||.
T Consensus       153 ~~NRvr~~~~~~~~~~asw-se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGD  231 (440)
T KOG0302|consen  153 GINRVRVSRLGNEVLCASW-SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGD  231 (440)
T ss_pred             ccceeeecccCCcceeeee-cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCc
Confidence            3444444454444444432 2267899999852                1357888999999999999983 23588888


Q ss_pred             CCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-C
Q 021648          118 LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-R  196 (309)
Q Consensus       118 ~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~  196 (309)
                      .-+.|++|.+.++....    .                               ..     ...+|...|..++.||.. .
T Consensus       232 c~~~I~lw~~~~g~W~v----d-------------------------------~~-----Pf~gH~~SVEDLqWSptE~~  271 (440)
T KOG0302|consen  232 CVKGIHLWEPSTGSWKV----D-------------------------------QR-----PFTGHTKSVEDLQWSPTEDG  271 (440)
T ss_pred             cccceEeeeeccCceee----c-------------------------------Cc-----cccccccchhhhccCCccCc
Confidence            88899999876543210    0                               01     122355567788999965 6


Q ss_pred             EEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC---CceEEEeecCCCCC
Q 021648          197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS---GKEVASWMSFDTEP  273 (309)
Q Consensus       197 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~---~~~~~~~~~~~~~v  273 (309)
                      .|++++.||.|+|||++.+........+ .|..-|..+.|+-.-.+||+|++||+++|||++.   ++++++|..|.++|
T Consensus       272 vfaScS~DgsIrIWDiRs~~~~~~~~~k-Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI  350 (440)
T KOG0302|consen  272 VFASCSCDGSIRIWDIRSGPKKAAVSTK-AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI  350 (440)
T ss_pred             eEEeeecCceEEEEEecCCCccceeEee-ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence            7889999999999999987433222222 3556788899998877999999999999999975   56799999999999


Q ss_pred             cEEEECCCe-eEEEEccceEEEeeecC
Q 021648          274 PVIKWTPGS-LMFVTGSSELSFWIPDL  299 (309)
Q Consensus       274 ~~l~~~p~~-~~l~s~~~d~~~~~~~~  299 (309)
                      ++|.|+|.. ..|+.++.|-++-+|||
T Consensus       351 tsieW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  351 TSIEWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             eEEEeccccCceEEeccCCCcEEEEEe
Confidence            999999964 56666666744444444

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=2.1e-19  Score=152.54  Aligned_cols=236  Identities=17%  Similarity=0.227  Sum_probs=163.8

Q ss_pred             CCEEEEeeCCCcEEEEEcCCC---ceeee------------------eeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648           23 SSYLVTASDDESIRLYDVTAA---TCLKT------------------INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~---~~~~~------------------~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      |+++|.|..|..|-|||++=.   .+..+                  -.+|...|..+++...-..++++  ++.|.+|+
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaS--gsaD~TV~  269 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLAS--GSADKTVK  269 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEe--cCCCceEE
Confidence            689999999999999998521   11111                  12455566666666655555554  34599999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeee-eeeecCc-eeEEECC--CCcEEEEE
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQG-LLRVQGR-PAAAYDD--QGLVFAVA  156 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~-~~~~~~~-~~~~~~~--~~~~~~~~  156 (309)
                      +||+.++++..++..|.+.|.++.|+|. ...|++||.|++|++.|.|...+.. ..+..+. -.....+  ...++++.
T Consensus       270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence            9999999999999999999999999985 6689999999999999998533221 2222221 1223332  23455556


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  235 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      .||.++-+|+|+..+   .++++..|...|.++++++.- .++++++.|+.|++|+........... +...-+...+.+
T Consensus       350 ddG~v~~~D~R~~~~---~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~~~~~~rl~c~~  425 (463)
T KOG0270|consen  350 DDGTVYYFDIRNPGK---PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-HSFKLGRLHCFA  425 (463)
T ss_pred             CCceEEeeecCCCCC---ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-ccccccceeecc
Confidence            789999999998653   366777778899999998764 567889999999999975432211111 001112233445


Q ss_pred             ECCCC-CEEEEEcCCCcEEEEECCCCceEE
Q 021648          236 FSPEG-MFVISGSGDGSVYAWSVRSGKEVA  264 (309)
Q Consensus       236 ~sp~g-~~l~s~s~Dg~i~vwd~~~~~~~~  264 (309)
                      +.|+- -++|.||.-+.++|||+.+...+.
T Consensus       426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  426 LDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             cCCCcceEEEecCccceEEEeecccChhHH
Confidence            66664 567777888889999998876654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=3.5e-19  Score=145.41  Aligned_cols=235  Identities=14%  Similarity=0.202  Sum_probs=167.9

Q ss_pred             eeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeee
Q 021648           56 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL  135 (309)
Q Consensus        56 v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~  135 (309)
                      ..++.|++-|.+++.+..   ||.+-+||+.+...-+.+.+|..+|.+++|++||+.|+|+|.|-.|.+||+..+.+...
T Consensus        26 a~~~~Fs~~G~~lAvGc~---nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCA---NGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeecc---CCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence            567889999999998876   77999999999888888999999999999999999999999999999999999988777


Q ss_pred             eeecCc-eeEEECC--CCcEEEEEECCEEEEEECCCCCcCCceEEEeCC--C-CCCCeEEEEccCCCEEEEEeCCCcEEE
Q 021648          136 LRVQGR-PAAAYDD--QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--D-ISDANVVKFSNDGRLMLLTTMEGHIHV  209 (309)
Q Consensus       136 ~~~~~~-~~~~~~~--~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~-~~~~~~v~~s~dg~~l~~~~~dg~v~i  209 (309)
                      ++...- ..+.+.|  ....+++-.+..-.+.++...   .-.++....  . ........|.+.|+++.+|...|.+.+
T Consensus       103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv  179 (405)
T KOG1273|consen  103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV  179 (405)
T ss_pred             EEccCccceeeeccccCCeEEEEEecCCcEEEEecCC---ceeeccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence            765431 2233333  233444444433334443321   101111110  0 011223358899999999999999999


Q ss_pred             EECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc------eEE---Eee--cCCCCCcEEEE
Q 021648          210 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK------EVA---SWM--SFDTEPPVIKW  278 (309)
Q Consensus       210 ~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~------~~~---~~~--~~~~~v~~l~~  278 (309)
                      +|..+-+++..+....  ...+-.+.|+-.|++++.-..|..||+|+++.-.      .+.   ++.  -...+=.+++|
T Consensus       180 ~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf  257 (405)
T KOG1273|consen  180 YDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF  257 (405)
T ss_pred             Eecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee
Confidence            9999999888877543  2456678899999999999999999999986311      111   110  11233466889


Q ss_pred             CCCeeEEEEccce---EEEeeec
Q 021648          279 TPGSLMFVTGSSE---LSFWIPD  298 (309)
Q Consensus       279 ~p~~~~l~s~~~d---~~~~~~~  298 (309)
                      +.+|.+++.++.-   +++|.-.
T Consensus       258 s~dgeYv~a~s~~aHaLYIWE~~  280 (405)
T KOG1273|consen  258 SGDGEYVCAGSARAHALYIWEKS  280 (405)
T ss_pred             cCCccEEEeccccceeEEEEecC
Confidence            9999999888763   6666543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=7.6e-17  Score=143.66  Aligned_cols=288  Identities=25%  Similarity=0.437  Sum_probs=206.7

Q ss_pred             ceEecCCCc-ceEEEEe-CCCCC-EEEEeeC-CCcEEEEEcCC-CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCc
Q 021648            4 GMSFRDYNG-RISSMDF-HKSSS-YLVTASD-DESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE   78 (309)
Q Consensus         4 ~~~~~~h~~-~V~~i~~-s~~~~-~l~t~s~-D~~v~iWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~   78 (309)
                      ...+.++.. .+..+.+ ++++. +++..+. |+.+++||... ......+..|...+..++|++++..++.++.  .|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~  178 (466)
T COG2319         101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS--LDG  178 (466)
T ss_pred             EEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC--CCC
Confidence            344555443 7777777 88887 5555555 99999999988 7888889999999999999999986665532  488


Q ss_pred             eeEEEEccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeee-eeeecCce-eEEECCCC-cEEE
Q 021648           79 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQG-LLRVQGRP-AAAYDDQG-LVFA  154 (309)
Q Consensus        79 ~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~~  154 (309)
                      .+++|++..++.+..+.+|...|.++.|+|++. .+++++.|+.+++||...+.... .+...... ...+.+.+ .+++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (466)
T COG2319         179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLAS  258 (466)
T ss_pred             ceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEE
Confidence            999999999888999999999999999999987 66666999999999987665554 23222211 22566665 4555


Q ss_pred             EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          155 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       155 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                      ++.++.+++|+.+....   ......++...+.++.++|++..+++++.|+.+++||..+........ ...+...+..+
T Consensus       259 ~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  334 (466)
T COG2319         259 GSSDGTIRLWDLRSSSS---LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSL  334 (466)
T ss_pred             ecCCCcEEEeeecCCCc---EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEE
Confidence            66789999999886543   122224456788899999999888888889999999988776665443 11233457778


Q ss_pred             EECCCCCEEEEE-cCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEE-ccce--EEEeeecC
Q 021648          235 SFSPEGMFVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT-GSSE--LSFWIPDL  299 (309)
Q Consensus       235 ~~sp~g~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s-~~~d--~~~~~~~~  299 (309)
                      .|.|++..++.+ ..|+.+++|++............. .+..+.+++ ...... +..+  +.+|....
T Consensus       335 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  401 (466)
T COG2319         335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLST  401 (466)
T ss_pred             EECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEeccc
Confidence            884443566666 788999999998876333332222 278899999 533333 3444  66665443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=5.8e-19  Score=150.54  Aligned_cols=245  Identities=14%  Similarity=0.269  Sum_probs=186.8

Q ss_pred             CCcceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCcee--eeeeccc-cceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648           10 YNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCL--KTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus        10 h~~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~--~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      -..+|.+..|.|+|. .++++|.-..+..||+.+.+..  ..+.++. ..+.....++++++++....   .+.|.+.-.
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~---~G~I~lLha  332 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN---NGHIHLLHA  332 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc---CceEEeehh
Confidence            357899999999998 8999999999999999887653  3444443 34667888899998887644   667999999


Q ss_pred             cCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc---eeEEECCCCcEEEEEEC-CEE
Q 021648           86 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVFAVAFG-GYI  161 (309)
Q Consensus        86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~i  161 (309)
                      .+++.+.+++ -.+.|.++.|++|++.|+.++.+|.|.+||++...++......+.   ...+.+..+.++|++++ |-|
T Consensus       333 kT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiV  411 (514)
T KOG2055|consen  333 KTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIV  411 (514)
T ss_pred             hhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceE
Confidence            9988887776 568899999999999999999999999999999988877765442   23455677778888876 889


Q ss_pred             EEEECCCC--CcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC--CCcEEEEECCCCeEeEEeeecCCCCCccceEEEC
Q 021648          162 RMFDARKY--EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM--EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  237 (309)
Q Consensus       162 ~~~d~~~~--~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~s  237 (309)
                      .|||..+-  ...+.++..+..-...|+.+.|+||+++|+.++.  +..+++.-..+.+....+......-+.+.+++||
T Consensus       412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS  491 (514)
T KOG2055|consen  412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS  491 (514)
T ss_pred             EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence            99984321  1123333333333457899999999999987764  5678876665555444333222233467889999


Q ss_pred             CCCCEEEEEcCCCcEEEEECC
Q 021648          238 PEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       238 p~g~~l~s~s~Dg~i~vwd~~  258 (309)
                      |.|.++|.|-++|.+.+|.+.
T Consensus       492 P~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  492 PNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CCCceEEeecCCCceeeEeec
Confidence            999999999999999999874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=9e-19  Score=147.25  Aligned_cols=275  Identities=18%  Similarity=0.239  Sum_probs=179.5

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcC--------C-----C---ceeeeeeccccceeEEEEecCC
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--------A-----A---TCLKTINSKKYGVDLVCFTSHP   65 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~--------~-----~---~~~~~~~~~~~~v~~~~~~~~~   65 (309)
                      |....|..|..+|+++.|+|+|++||||+.++.|.+|-..        +     .   ...+.+.+|...+..++|++++
T Consensus        56 ~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~  135 (434)
T KOG1009|consen   56 EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS  135 (434)
T ss_pred             EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC
Confidence            5567889999999999999999999999999999999654        2     1   1123466777788899999999


Q ss_pred             CEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEE
Q 021648           66 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA  145 (309)
Q Consensus        66 ~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~  145 (309)
                      ..+++++.   |+.+++||+..|.....+.+|...|..++|.|-++++++=|.|+..+..++...+..............
T Consensus       136 ~~l~s~s~---dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~  212 (434)
T KOG1009|consen  136 NFLVSGSV---DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKA  212 (434)
T ss_pred             ceeeeeec---cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecc
Confidence            99998864   999999999999999999999999999999999999999999997776665433322211100000000


Q ss_pred             ECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC----CCc-----EEEEECCCCe
Q 021648          146 YDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM----EGH-----IHVLDSFRGT  216 (309)
Q Consensus       146 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~----dg~-----v~i~d~~~~~  216 (309)
                      ..+       ......++|.-++.+             +=...++|+|||.++++...    .+.     .++|+..   
T Consensus       213 ~~~-------~e~~s~rLfhDeTlk-------------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk---  269 (434)
T KOG1009|consen  213 FNE-------REGKSTRLFHDETLK-------------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK---  269 (434)
T ss_pred             cCC-------CCcceeeeeecCchh-------------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccc---
Confidence            000       011234444322211             01234678899988886542    222     3444321   


Q ss_pred             EeEEee-ecCCCCCccceEEEC------------------CCCCEEEEEcCCCcEEEEECCCCceEEEe-ecCCCCCcEE
Q 021648          217 LLSTYN-VKPVSRNSTLEASFS------------------PEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVI  276 (309)
Q Consensus       217 ~~~~~~-~~~~~~~~~~~~~~s------------------p~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-~~~~~~v~~l  276 (309)
                      .+.... .-+....+...+.|+                  |.+..+|.+.. ..++|||.++.+++... .-|-..++.+
T Consensus       270 ~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDi  348 (434)
T KOG1009|consen  270 DLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDI  348 (434)
T ss_pred             cccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecce
Confidence            111100 001111223333333                  33444555554 56999999987775543 2355689999


Q ss_pred             EECCCeeEEEEccce--EEEeeecCCCcc
Q 021648          277 KWTPGSLMFVTGSSE--LSFWIPDLSKLG  303 (309)
Q Consensus       277 ~~~p~~~~l~s~~~d--~~~~~~~~~~~~  303 (309)
                      +|++||..|+..+-|  |.+-..+..-||
T Consensus       349 aws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  349 AWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             eecCCCcEEEEeccCCceEEEEEcchhcc
Confidence            999999988888877  555444444444

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.83  E-value=3.2e-19  Score=142.30  Aligned_cols=285  Identities=12%  Similarity=0.151  Sum_probs=187.0

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      -..++.|.+.|+++.|..++ +|.+|..-|.|++|++.+......++ .+...++.+...|++ .+.+   .|-|..+.+
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~t---qgRd~~L~l   81 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDT---QGRDPLLIL   81 (323)
T ss_pred             eeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhh---cCCCceEEE
Confidence            35678999999999999876 48899999999999999988888887 445556666655553 2322   355899999


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCC-cEEEeeCCCcee----------eeeee----ec-CceeEEE
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-TVLLWDQRAEKC----------QGLLR----VQ-GRPAAAY  146 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg-~v~~Wd~~~~~~----------~~~~~----~~-~~~~~~~  146 (309)
                      |++.-+..+..   |.-.++++.|++-.  +...+... ....++-+....          ...+.    .. .-...+.
T Consensus        82 w~ia~s~~i~i---~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~  156 (323)
T KOG0322|consen   82 WTIAYSAFISI---HSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ  156 (323)
T ss_pred             EEccCcceEEE---eeeeccccccccce--eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence            99987765443   55667777777532  22222111 111111111000          00000    00 0011122


Q ss_pred             C----CCC-cEEEEEE-CCEEEEEECCCCCc------CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 021648          147 D----DQG-LVFAVAF-GGYIRMFDARKYEK------GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  214 (309)
Q Consensus       147 ~----~~~-~~~~~~~-~~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~  214 (309)
                      .    +.. .++.+++ +|.+-+||+...+.      ....+.....+..++.++.+.+.-..=++++.+.++..|.+..
T Consensus       157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~  236 (323)
T KOG0322|consen  157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH  236 (323)
T ss_pred             eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence            1    222 3444444 68999999876311      1112233344566788888887666667788888888887643


Q ss_pred             --CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceE
Q 021648          215 --GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSEL  292 (309)
Q Consensus       215 --~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~  292 (309)
                        +.+....+.. ..+..+..+..-||++.+||+|.|+.||||+.++.++++.++.|++.+++++|+|+..+++.+++|.
T Consensus       237 s~gslq~~~e~~-lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~  315 (323)
T KOG0322|consen  237 STGSLQIRKEIT-LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA  315 (323)
T ss_pred             ccCcccccceEE-ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence              3332221111 1223456788999999999999999999999999999999999999999999999999999999996


Q ss_pred             EEeeecC
Q 021648          293 SFWIPDL  299 (309)
Q Consensus       293 ~~~~~~~  299 (309)
                      ++=.|+|
T Consensus       316 rISLWkL  322 (323)
T KOG0322|consen  316 RISLWKL  322 (323)
T ss_pred             eEEeeec
Confidence            6655543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=2e-18  Score=148.64  Aligned_cols=262  Identities=16%  Similarity=0.247  Sum_probs=176.6

Q ss_pred             eeCCCcEEEEEcCCCceeeeeecccc--ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC--ce--EEEeeecccCEE
Q 021648           29 ASDDESIRLYDVTAATCLKTINSKKY--GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--KY--LRYFKGHHDRVV  102 (309)
Q Consensus        29 ~s~D~~v~iWd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~--~~--~~~~~~h~~~v~  102 (309)
                      +|...+++|||+...+..-.+..+..  ++..++|..... +++++.+| |..+++|--...  +.  +....|-  .-.
T Consensus         8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~g-dk~~~~~~K~g~~~~Vp~~~k~~gd--~~~   83 (673)
T KOG4378|consen    8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAG-DKVMRIKEKDGKTPEVPRVRKLTGD--NAF   83 (673)
T ss_pred             eccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCC-ceeEEEecccCCCCccceeeccccc--hHH
Confidence            33335789999987665555444332  366677765443 55555544 899999964332  21  2222222  334


Q ss_pred             EEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEEE-CCEEEEEECCCCCcCCceEEEe
Q 021648          103 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSV  179 (309)
Q Consensus       103 ~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~  179 (309)
                      ||.......++++|+..+.|+|||++...+...++-+.  ...+.|.....+++... +|.|.+-.+.....  ...+..
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~--tt~f~~  161 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK--TTTFTI  161 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc--ccceec
Confidence            44444556899999999999999998666555554333  33456777777776654 67888887664322  111222


Q ss_pred             CCCCCCCeEEEEccCCCEE-EEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC-CCEEEEEcCCCcEEEEEC
Q 021648          180 GGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSV  257 (309)
Q Consensus       180 ~~~~~~~~~v~~s~dg~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~-g~~l~s~s~Dg~i~vwd~  257 (309)
                      . ....++-+.|||..+.+ .+++.+|.|.+||......+..+.  ..|..+...++|+|. ...|++.|.|..|++||+
T Consensus       162 ~-sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~--~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~  238 (673)
T KOG4378|consen  162 D-SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS--EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI  238 (673)
T ss_pred             C-CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh--hhccCCcCcceecCCccceEEEecccceEEEeec
Confidence            1 11245678999988765 457889999999987666554332  346667778999995 578899999999999999


Q ss_pred             CCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCC
Q 021648          258 RSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS  300 (309)
Q Consensus       258 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~  300 (309)
                      +..+....+ ....+.+.|+|+|+|.+|+.|.+-.++..-|+.
T Consensus       239 ~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  239 RSQASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             cccccccee-eecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence            876665555 456789999999999999999987666555543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=4.3e-18  Score=151.27  Aligned_cols=268  Identities=16%  Similarity=0.236  Sum_probs=198.6

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR   92 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~   92 (309)
                      .|..++|-|||..|+.+. |..+-|||.+.|..++++.+|+..|.+++++.+|+.++++++   |..|-+|+.+-...++
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~a---DK~VI~W~~klEG~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSA---DKSVIIWTSKLEGILK   89 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCC---ceeEEEecccccceee
Confidence            899999999999888775 457899999999999999999999999999999999987764   8999999865433222


Q ss_pred             EeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEE-ECCEEEEEECCCCCc
Q 021648           93 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA-FGGYIRMFDARKYEK  171 (309)
Q Consensus        93 ~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~  171 (309)
                        -.|.+.|-++.|+|-...|+|++-. ..-+|..+...............+...++|.+++.+ .+|+|.+=+-.  ..
T Consensus        90 --YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~--gE  164 (1081)
T KOG1538|consen   90 --YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN--GE  164 (1081)
T ss_pred             --eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC--CC
Confidence              2499999999999988899999854 567898765443322222233456777899999888 47888875422  12


Q ss_pred             CCceEEEeCCCCCCCeEEEEccCCC-----EEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648          172 GPFDIFSVGGDISDANVVKFSNDGR-----LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  246 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~~v~~s~dg~-----~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~  246 (309)
                      +...+...+|..+++.+++++|...     .++...=..++..+.+ +|+.+..-..   ..-...++.+-|+|.|++.|
T Consensus       165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~---L~FdP~CisYf~NGEy~LiG  240 (1081)
T KOG1538|consen  165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRA---LNFDPCCISYFTNGEYILLG  240 (1081)
T ss_pred             cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeeccccc---CCCCchhheeccCCcEEEEc
Confidence            3344556677888999999999653     2333333333333332 3444331110   11223467899999999999


Q ss_pred             cCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEE
Q 021648          247 SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF  294 (309)
Q Consensus       247 s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~  294 (309)
                      |.|+.+++|.. .|-.+.+.-....-|..++.+|+++..+.|+.|.++
T Consensus       241 Gsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi  287 (1081)
T KOG1538|consen  241 GSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI  287 (1081)
T ss_pred             cCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCee
Confidence            99999999977 566777777778899999999999999999998665

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=2.3e-17  Score=134.43  Aligned_cols=246  Identities=15%  Similarity=0.270  Sum_probs=166.0

Q ss_pred             ccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc----eEEEeeecccCEEEEEecC-C-CCeEEEecCCCcEEE
Q 021648           51 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YLRYFKGHHDRVVSLSLCS-S-KDCFISGSLDRTVLL  124 (309)
Q Consensus        51 ~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~----~~~~~~~h~~~v~~v~~~~-~-~~~l~s~s~Dg~v~~  124 (309)
                      +|+.-+.++.|.+.|..++++|+   |+++++||.+...    +....+.|.+.|+.|.|.+ . |+.++++|.|+++++
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSs---Dq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSS---DQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             CCcceeeeeeecccCceeeeccC---CCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            45666889999999999999986   8899999976543    4455678999999999974 3 889999999999999


Q ss_pred             eeCC--Cc-----eeeeeeeec-C---ceeEEECC--CCcEE-EEEECCEEEEEECCCCC-c------CCce--EEEeCC
Q 021648          125 WDQR--AE-----KCQGLLRVQ-G---RPAAAYDD--QGLVF-AVAFGGYIRMFDARKYE-K------GPFD--IFSVGG  181 (309)
Q Consensus       125 Wd~~--~~-----~~~~~~~~~-~---~~~~~~~~--~~~~~-~~~~~~~i~~~d~~~~~-~------~~~~--~~~~~~  181 (309)
                      |.=.  +.     +-+....+. .   ...+.|.|  -+..+ +++.||.+|||+....- .      ..+.  ....+.
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            9721  11     111111111 1   11234444  34444 45579999999854211 0      0011  001122


Q ss_pred             CCCCCeEEEEccC---CCEEEEEeCC-----CcEEEEECCCCe-EeEEeeecCCCCCccceEEECCC-C---CEEEEEcC
Q 021648          182 DISDANVVKFSND---GRLMLLTTME-----GHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPE-G---MFVISGSG  248 (309)
Q Consensus       182 ~~~~~~~v~~s~d---g~~l~~~~~d-----g~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~sp~-g---~~l~s~s~  248 (309)
                      +.....|+.++|.   ..+|+.|+.+     +.+.||....+. .......-+.+..+|.+++|.|+ |   ..||+|+.
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence            3345677777764   3567777776     478888754432 22222212356778999999996 3   57899999


Q ss_pred             CCcEEEEECCCC--------------------ceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeecCC
Q 021648          249 DGSVYAWSVRSG--------------------KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS  300 (309)
Q Consensus       249 Dg~i~vwd~~~~--------------------~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~~~  300 (309)
                      || |+||.+...                    +.+..+..|+++|..+.|+=.|..|++.+.|  +++|-....
T Consensus       248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence            99 999999731                    1355577899999999999999999999998  677754443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.1e-19  Score=154.20  Aligned_cols=290  Identities=19%  Similarity=0.297  Sum_probs=210.7

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEecCCC--EEEEEcCCCCCc
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPT--TVIYSSKNGWDE   78 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~~~s~~g~d~   78 (309)
                      .+...|..|.|.|+.|.|+..|..|+|||.|..|.+||-..+.....+. +|...|....|-|...  .++.++.   |+
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~---dg  209 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR---DG  209 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc---cC
Confidence            4567788999999999999999999999999999999998887765554 5665566566766432  4555443   88


Q ss_pred             eeEEEEcc-CCc--eEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecC--c------eeEEE
Q 021648           79 SLRLLSLH-DNK--YLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--R------PAAAY  146 (309)
Q Consensus        79 ~i~~~d~~-~~~--~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~------~~~~~  146 (309)
                      ++|+=.+- ++.  .++.+..|.++|..++.-|+ .+.|.|++.|+.+.-.|++.......+....  .      ...+.
T Consensus       210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~  289 (559)
T KOG1334|consen  210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV  289 (559)
T ss_pred             ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence            99988753 332  25567789999999999886 4579999999999999998776554432211  1      11222


Q ss_pred             CCC-CcEEE-EEECCEEEEEECCCCCcC----Cce----EEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe
Q 021648          147 DDQ-GLVFA-VAFGGYIRMFDARKYEKG----PFD----IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  216 (309)
Q Consensus       147 ~~~-~~~~~-~~~~~~i~~~d~~~~~~~----~~~----~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~  216 (309)
                      .|. ...++ .+.|...++||.|.....    .++    ...+......|.+++|+.+|.-+++.=.|..|++|....+.
T Consensus       290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~  369 (559)
T KOG1334|consen  290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD  369 (559)
T ss_pred             CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence            332 23444 456889999998865432    111    11122334578999999998888888889999999643221


Q ss_pred             E------------eEE-eeecCCCCC--ccceEE-ECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECC
Q 021648          217 L------------LST-YNVKPVSRN--STLEAS-FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP  280 (309)
Q Consensus       217 ~------------~~~-~~~~~~~~~--~~~~~~-~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p  280 (309)
                      -            ... |.   .|.+  .|-.+- |.|...|+++||+-|.|.||+-.+++.+.-+.+-..-|+||.-||
T Consensus       370 G~~p~~~s~~~~~~k~vYK---GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP  446 (559)
T KOG1334|consen  370 GSEPDPSSPREQYVKRVYK---GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP  446 (559)
T ss_pred             CCCCCCCcchhhccchhhc---ccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence            1            111 22   2332  233443 689999999999999999999999999888877777899999999


Q ss_pred             CeeEEEEccc--eEEEeee
Q 021648          281 GSLMFVTGSS--ELSFWIP  297 (309)
Q Consensus       281 ~~~~l~s~~~--d~~~~~~  297 (309)
                      -...||+.+-  |+++|.|
T Consensus       447 ~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  447 HLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             CCchhhccCCccceeeecC
Confidence            9999999886  5999988

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=1e-15  Score=134.29  Aligned_cols=268  Identities=11%  Similarity=0.129  Sum_probs=166.3

Q ss_pred             EEEeeCCCcEEEEEcCC-Cc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC-Cce--EEEeeeccc
Q 021648           26 LVTASDDESIRLYDVTA-AT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKY--LRYFKGHHD   99 (309)
Q Consensus        26 l~t~s~D~~v~iWd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~-~~~--~~~~~~h~~   99 (309)
                      .++...|++|++||+.+ ++  .++++... .....++++|+++.++++..  .++.|.+|++.. ++.  +... ...+
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~-~~~~~l~~spd~~~lyv~~~--~~~~i~~~~~~~~g~l~~~~~~-~~~~   80 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVP-GQVQPMVISPDKRHLYVGVR--PEFRVLSYRIADDGALTFAAES-PLPG   80 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecC-CCCccEEECCCCCEEEEEEC--CCCcEEEEEECCCCceEEeeee-cCCC
Confidence            45567899999999964 33  44555432 34567899999998877643  267899999863 332  1211 1334


Q ss_pred             CEEEEEecCCCCeEEEecC-CCcEEEeeCCCce-e---eeeeee-cCceeEEECCCCcEEE-EE-ECCEEEEEECCCCCc
Q 021648          100 RVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEK-C---QGLLRV-QGRPAAAYDDQGLVFA-VA-FGGYIRMFDARKYEK  171 (309)
Q Consensus       100 ~v~~v~~~~~~~~l~s~s~-Dg~v~~Wd~~~~~-~---~~~~~~-~~~~~~~~~~~~~~~~-~~-~~~~i~~~d~~~~~~  171 (309)
                      ....+.++|+++++++++. ++.+.+||+.+.. .   ...+.. .......+++++..+. +. .++.|.+||+.....
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence            5678999999998887764 8899999986322 1   111111 1112345677765443 33 358999999865211


Q ss_pred             C-C--ceEEEeCCCCCCCeEEEEccCCCEEEEEeC-CCcEEEEECCC--Ce--EeEEeeecCC---CCCccceEEECCCC
Q 021648          172 G-P--FDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFR--GT--LLSTYNVKPV---SRNSTLEASFSPEG  240 (309)
Q Consensus       172 ~-~--~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~-dg~v~i~d~~~--~~--~~~~~~~~~~---~~~~~~~~~~sp~g  240 (309)
                      - .  ....... .......++|+|||+++.+... ++.|.+||...  ++  .+.++...+.   .......+.|+|+|
T Consensus       161 l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        161 LVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             ccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence            0 0  0001111 1134567899999999877655 89999999863  33  2333322111   11122358899999


Q ss_pred             CEEEEEc-CCCcEEEEECCCCceEEEeecC---CCCCcEEEECCCeeEEEEccc-e--EEEeeec
Q 021648          241 MFVISGS-GDGSVYAWSVRSGKEVASWMSF---DTEPPVIKWTPGSLMFVTGSS-E--LSFWIPD  298 (309)
Q Consensus       241 ~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~---~~~v~~l~~~p~~~~l~s~~~-d--~~~~~~~  298 (309)
                      ++++++. .++.|.+|++.......++.++   ...+..++++|+++.|.++.. +  +.+|..+
T Consensus       240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            9999985 4789999999653321222222   124668999999987776554 3  6777654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=2e-17  Score=149.80  Aligned_cols=220  Identities=14%  Similarity=0.168  Sum_probs=155.5

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCC---cEEEEEcCCCce--eeeeeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDE---SIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~---~v~iWd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      +++..|...+.+.+|+|||++|+.++.+.   .|.+||+.+++.  +..+.++   ....+|+|+++.+++++..  ++.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~--~g~  271 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSK--DGV  271 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEec--CCc
Confidence            45667888899999999999999988653   699999988754  3334433   3357999999998886532  444


Q ss_pred             e--EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEec-CCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEE
Q 021648           80 L--RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA  156 (309)
Q Consensus        80 i--~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (309)
                      +  .+||+.+++ ...+..|...+....|+|||+.++.++ .++..++|++......                       
T Consensus       272 ~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-----------------------  327 (429)
T PRK01742        272 LNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-----------------------  327 (429)
T ss_pred             EEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----------------------
Confidence            4  455666655 455666777888999999999766554 6788888875322100                       


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                          .++             .  . ...  ....+||||+.++..+.++ +.+||+.++.......  .   .......|
T Consensus       328 ----~~~-------------l--~-~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~--~---~~~~~~~~  379 (429)
T PRK01742        328 ----ASL-------------V--G-GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS--T---FLDESPSI  379 (429)
T ss_pred             ----eEE-------------e--c-CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC--C---CCCCCceE
Confidence                000             0  0 000  1346899999998887765 5569998876543211  1   11235789


Q ss_pred             CCCCCEEEEEcCCCcEEEEEC--CCCceEEEeecCCCCCcEEEECCC
Q 021648          237 SPEGMFVISGSGDGSVYAWSV--RSGKEVASWMSFDTEPPVIKWTPG  281 (309)
Q Consensus       237 sp~g~~l~s~s~Dg~i~vwd~--~~~~~~~~~~~~~~~v~~l~~~p~  281 (309)
                      +|||++|+.++.++.+++|++  .+++.+..+..|++.+..++|||-
T Consensus       380 sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        380 SPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            999999999999999998886  357778888888888999999984

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.79  E-value=2e-17  Score=135.86  Aligned_cols=285  Identities=14%  Similarity=0.291  Sum_probs=192.1

Q ss_pred             ecCCCcceEEEEeCC-----CCCEEEEeeCCCcEEEEEcCC-C--ceeeeeec--cccceeEEEEecCC---CEEEEEcC
Q 021648            7 FRDYNGRISSMDFHK-----SSSYLVTASDDESIRLYDVTA-A--TCLKTINS--KKYGVDLVCFTSHP---TTVIYSSK   73 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~-----~~~~l~t~s~D~~v~iWd~~~-~--~~~~~~~~--~~~~v~~~~~~~~~---~~~~~~s~   73 (309)
                      ..+|+.+|..+.|++     +-..+||+|.+ .+-+|.... +  ..++.+..  ++....-++++-+.   +-++++  
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~--  110 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA--  110 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe--
Confidence            357999999999984     23567777754 778888763 2  23344432  22233344544322   223322  


Q ss_pred             CCCCceeEEEEccCCceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeee-cC----ceeEEEC
Q 021648           74 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRV-QG----RPAAAYD  147 (309)
Q Consensus        74 ~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~-~~----~~~~~~~  147 (309)
                      +|.-+.||+.|+.+++..+.+.+|-..|+.+.++|+ .++++++|.|.+||+|++++..|+..+.. .+    ..++.++
T Consensus       111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~  190 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS  190 (385)
T ss_pred             ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence            245789999999999999999999999999999996 57999999999999999999999877632 11    2234555


Q ss_pred             CCC-cEEEEEECCEEEEEECCCCC----------------cCCc-------eEE-EeCCCCCCCeEEEEccCCCEEEEEe
Q 021648          148 DQG-LVFAVAFGGYIRMFDARKYE----------------KGPF-------DIF-SVGGDISDANVVKFSNDGRLMLLTT  202 (309)
Q Consensus       148 ~~~-~~~~~~~~~~i~~~d~~~~~----------------~~~~-------~~~-~~~~~~~~~~~v~~s~dg~~l~~~~  202 (309)
                      .++ .+++++.|..|++|++...+                ..++       ..+ +-..|...|-|+.|-  |.++++-+
T Consensus       191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSks  268 (385)
T KOG1034|consen  191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKS  268 (385)
T ss_pred             CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecc
Confidence            544 56677889999999976210                0011       111 111222333333332  57889999


Q ss_pred             CCCcEEEEEC-CCCeEe-------------EEeeecCCCCCccc--eEEECCCCCEEEEEcCCCcEEEEECCCCceE--E
Q 021648          203 MEGHIHVLDS-FRGTLL-------------STYNVKPVSRNSTL--EASFSPEGMFVISGSGDGSVYAWSVRSGKEV--A  264 (309)
Q Consensus       203 ~dg~v~i~d~-~~~~~~-------------~~~~~~~~~~~~~~--~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~--~  264 (309)
                      -++.|..|.. .-.+.+             .++..   ....++  .-+|.|-++.||.|...|.+++||++..++.  .
T Consensus       269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~---~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t  345 (385)
T KOG1034|consen  269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDY---PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT  345 (385)
T ss_pred             cCceEEEEecchhhhhhhccCCCccceeeeeEecc---CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc
Confidence            9999999986 212221             11111   122233  3456778999999999999999999887663  2


Q ss_pred             EeecC--CCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          265 SWMSF--DTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       265 ~~~~~--~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      ++..+  .+.|...+|+-|+..|+..+.|..+|-|+.
T Consensus       346 tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  346 TLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             eEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            22222  346778999999999999999999998874

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=9.1e-17  Score=146.86  Aligned_cols=291  Identities=16%  Similarity=0.219  Sum_probs=191.5

Q ss_pred             ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC---EEEEEcCCCCCceeEEE
Q 021648            7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLL   83 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~s~~g~d~~i~~~   83 (309)
                      +.|-+..-..-.|++|+++++-. .+.+|+||.+.||+|++.+..|..++..+.+.+...   +++.++.   |++|++|
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl---~G~I~vw   87 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSL---DGTIRVW   87 (792)
T ss_pred             eccccceecccccccCCcEEEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEec---CccEEEe
Confidence            34444445556789999888666 567999999999999999999999999888887665   3344443   8899999


Q ss_pred             EccCCceEEEeeecccCEEEEEecC---CCCeEE-EecCCCcEE------------EeeCCCce--eeeeeee-cCceeE
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCS---SKDCFI-SGSLDRTVL------------LWDQRAEK--CQGLLRV-QGRPAA  144 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~---~~~~l~-s~s~Dg~v~------------~Wd~~~~~--~~~~~~~-~~~~~~  144 (309)
                      |...++.++++..+.. +.++.+.|   +...++ .+..|..+.            -..+.+..  ....+.. ......
T Consensus        88 d~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I  166 (792)
T KOG1963|consen   88 DWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI  166 (792)
T ss_pred             cCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence            9999998888765432 22222211   111111 111222111            11110000  0000000 012234


Q ss_pred             EECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC-eEeEEeee
Q 021648          145 AYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNV  223 (309)
Q Consensus       145 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~-~~~~~~~~  223 (309)
                      .+.+.+.+.....+..+.+|...............-.|...+.++++||++++++++..||+|.+|.-... ..-.+...
T Consensus       167 ~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~  246 (792)
T KOG1963|consen  167 VDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTL  246 (792)
T ss_pred             EEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceE
Confidence            56677778888888999999876532110000001112334788999999999999999999999975431 11111111


Q ss_pred             cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCCCcc
Q 021648          224 KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG  303 (309)
Q Consensus       224 ~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~~  303 (309)
                      -+=|...|..++|++||.+|+|||.++.+-+|.+.+++ -.-++...+.|..+.+|||+...+...+|-++....++++.
T Consensus       247 lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  247 LHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             EEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence            11244688999999999999999999999999999987 44467888999999999999988888888776665554443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.78  E-value=1.2e-17  Score=148.58  Aligned_cols=234  Identities=18%  Similarity=0.323  Sum_probs=171.5

Q ss_pred             ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee
Q 021648           55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  134 (309)
Q Consensus        55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~  134 (309)
                      .|..+||.|||..++.++    +..+.+||.+.|..+.+++||++.|.+|+|+.||+.|+||+.|+.|.+|..+   ...
T Consensus        14 ci~d~afkPDGsqL~lAA----g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA----GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEG   86 (1081)
T ss_pred             chheeEECCCCceEEEec----CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccc
Confidence            577899999999998876    5689999999999999999999999999999999999999999999999743   333


Q ss_pred             eeeecC---ceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEE
Q 021648          135 LLRVQG---RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  211 (309)
Q Consensus       135 ~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d  211 (309)
                      .++...   ..+..+.|-...++++.=..--+|......     +... .....+.++++..||++++.|-.||+|.+-+
T Consensus        87 ~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~-----V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen   87 ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS-----VSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhh-----HHhh-hhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence            443322   123455565555544433344566533211     0000 0123567888999999999999999999875


Q ss_pred             CCCCeEeEEeeecCCCCCccceEEECCCC-----CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEE
Q 021648          212 SFRGTLLSTYNVKPVSRNSTLEASFSPEG-----MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV  286 (309)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~g-----~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  286 (309)
                      . +++....+..+.....+++.++|+|..     ..++......++..+.+ +|+.+..-...+-.+-|+.+-|+|.++.
T Consensus       161 k-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~L  238 (1081)
T KOG1538|consen  161 K-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYIL  238 (1081)
T ss_pred             C-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEE
Confidence            3 455555555555667789999999953     46777777778888887 4566665455566678999999999999


Q ss_pred             Eccce--EEEeeecCCCcc
Q 021648          287 TGSSE--LSFWIPDLSKLG  303 (309)
Q Consensus       287 s~~~d--~~~~~~~~~~~~  303 (309)
                      .|++|  ++++--+.-+||
T Consensus       239 iGGsdk~L~~fTR~GvrLG  257 (1081)
T KOG1538|consen  239 LGGSDKQLSLFTRDGVRLG  257 (1081)
T ss_pred             EccCCCceEEEeecCeEEe
Confidence            98887  666666655554

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.78  E-value=1.9e-17  Score=133.91  Aligned_cols=242  Identities=14%  Similarity=0.254  Sum_probs=170.9

Q ss_pred             eEecCCCcceEEEEeCCCC-CEEEEeeCC-------CcEEEEEcCC---------Cceeeeee-ccccceeEEEEecCCC
Q 021648            5 MSFRDYNGRISSMDFHKSS-SYLVTASDD-------ESIRLYDVTA---------ATCLKTIN-SKKYGVDLVCFTSHPT   66 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~-~~l~t~s~D-------~~v~iWd~~~---------~~~~~~~~-~~~~~v~~~~~~~~~~   66 (309)
                      +.|..|.++|..++-+|-. ++|+|+-.|       ..+.||.+..         .+|+..+. .+...+.++.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            4677899999999999954 556665442       3578998753         23344444 2234688999999999


Q ss_pred             EEEEEcCCCCCceeEEEEccCCce-EEEe-----eecccCEEEEEecC--CCCeEEEecCCCcEEEeeCCCceeeeeeee
Q 021648           67 TVIYSSKNGWDESLRLLSLHDNKY-LRYF-----KGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRV  138 (309)
Q Consensus        67 ~~~~~s~~g~d~~i~~~d~~~~~~-~~~~-----~~h~~~v~~v~~~~--~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~  138 (309)
                      .+++..    |+.|.+|++..+.. +..+     .+|....++-.|+|  |++.+++.+ |+++..||.|+.++...+. 
T Consensus       137 klasm~----dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~-  210 (370)
T KOG1007|consen  137 KLASMD----DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE-  210 (370)
T ss_pred             eeEEec----cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh-
Confidence            998876    78999999987654 2222     23556677778888  566777765 8889999988665432221 


Q ss_pred             cCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCe-
Q 021648          139 QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGT-  216 (309)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~-  216 (309)
                                                             ..  |...++.+.|+|+. .+|++++.||.|++||.++.+ 
T Consensus       211 ---------------------------------------dA--Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~  249 (370)
T KOG1007|consen  211 ---------------------------------------DA--HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF  249 (370)
T ss_pred             ---------------------------------------hh--hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc
Confidence                                                   00  11235667788875 567889999999999987643 


Q ss_pred             EeEEeeecCCCCCccceEEECCC-CCEEEEEcCCCcEEEEECCCCc-----------------------------eEEEe
Q 021648          217 LLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSGK-----------------------------EVASW  266 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~sp~-g~~l~s~s~Dg~i~vwd~~~~~-----------------------------~~~~~  266 (309)
                      .+.+.   +.|...+++|.|+|. .+.|+|||.|..|.+|-..+--                             .+.++
T Consensus       250 pv~el---~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty  326 (370)
T KOG1007|consen  250 PVQEL---PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY  326 (370)
T ss_pred             ccccc---CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence            33333   246678999999995 6889999999999999864310                             13455


Q ss_pred             ecCCCCCcEEEECCCee-EEEEccceEEEee
Q 021648          267 MSFDTEPPVIKWTPGSL-MFVTGSSELSFWI  296 (309)
Q Consensus       267 ~~~~~~v~~l~~~p~~~-~l~s~~~d~~~~~  296 (309)
                      ..|...|.+++||.... .|++=+.|.++-+
T Consensus       327 dehEDSVY~~aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  327 DEHEDSVYALAWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             cccccceEEEeeccCCCeeEEEeccCceEEe
Confidence            67888999999998765 6788888877643

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.78  E-value=6.2e-16  Score=128.98  Aligned_cols=237  Identities=16%  Similarity=0.249  Sum_probs=170.6

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   89 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~   89 (309)
                      -...+..+.|+++...|..|+.||. ++|..+....  .+.-....+..+..-.....++..+. ..-..+++.+++.+.
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLFSSSLvaiV~~-~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLFSSSLVAIVSI-KQPRKLKVVHFKKKT   79 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeecccceeEEEec-CCCceEEEEEcccCc
Confidence            3456788889999999999999987 8888764332  11111223344443333444554443 223678899988877


Q ss_pred             eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec--C-ceeEE--ECCCCcEEEEE---ECCEE
Q 021648           90 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--G-RPAAA--YDDQGLVFAVA---FGGYI  161 (309)
Q Consensus        90 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~-~~~~~--~~~~~~~~~~~---~~~~i  161 (309)
                      .+..+. ...+|.+|.++.  ++|+.+-.+. |.++|+++-+..+++...  + .-.++  .++.+.+++.-   ..|.|
T Consensus        80 ~ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV  155 (391)
T KOG2110|consen   80 TICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV  155 (391)
T ss_pred             eEEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence            666654 556899998875  5677776554 999999998888776432  1 11223  33444566543   24899


Q ss_pred             EEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCc-EEEEECCCCeEeEEeeecCCCCCccceEEECCCC
Q 021648          162 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  240 (309)
Q Consensus       162 ~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g  240 (309)
                      .+||..+.+.    +..+..|...+.+++|+++|.++|+++..|+ ||||....|..+.+|..... ...+.+++|+||+
T Consensus       156 ~l~d~~nl~~----v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds  230 (391)
T KOG2110|consen  156 VLFDTINLQP----VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDS  230 (391)
T ss_pred             EEEEccccee----eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-eeEEEEEEECCCC
Confidence            9999876542    3445567889999999999999999999996 78999999999999875433 4567889999999


Q ss_pred             CEEEEEcCCCcEEEEECCC
Q 021648          241 MFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       241 ~~l~s~s~Dg~i~vwd~~~  259 (309)
                      ++|++.|..++|+||.++.
T Consensus       231 ~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  231 QFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CeEEEecCCCeEEEEEecc
Confidence            9999999999999999865

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=2.1e-15  Score=132.23  Aligned_cols=268  Identities=8%  Similarity=0.082  Sum_probs=164.6

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEe-eCCCcEEEEEcC-CCce--eeeeeccccceeEEEEecCCCEEEEEcCCCCCc
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTA-SDDESIRLYDVT-AATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE   78 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~-s~D~~v~iWd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~   78 (309)
                      ++.++. +.+....+.++|++++|+.+ ..++.|.+|++. +++.  +..... ......++++|+++.++++..  .++
T Consensus        27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~~~p~~i~~~~~g~~l~v~~~--~~~  102 (330)
T PRK11028         27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-PGSPTHISTDHQGRFLFSASY--NAN  102 (330)
T ss_pred             eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-CCCceEEEECCCCCEEEEEEc--CCC
Confidence            344454 34667789999999987655 458899999986 3432  222221 123567899999998887753  278


Q ss_pred             eeEEEEccC-Cc---eEEEeeecccCEEEEEecCCCCeEE-EecCCCcEEEeeCCCceeee-----eee--ecCc-eeEE
Q 021648           79 SLRLLSLHD-NK---YLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQG-----LLR--VQGR-PAAA  145 (309)
Q Consensus        79 ~i~~~d~~~-~~---~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~Dg~v~~Wd~~~~~~~~-----~~~--~~~~-~~~~  145 (309)
                      .+.+|++.. +.   .+..+. +......+.++|++++++ +...++.|.+||+.+.....     ...  .... ....
T Consensus       103 ~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~  181 (330)
T PRK11028        103 CVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV  181 (330)
T ss_pred             eEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence            999999964 32   223232 234467788999998774 55667999999987632211     111  1111 2356


Q ss_pred             ECCCCcEEEEEE--CCEEEEEECCCCCcCCce-EEEeCCC------CCCCeEEEEccCCCEEEEEe-CCCcEEEEECCCC
Q 021648          146 YDDQGLVFAVAF--GGYIRMFDARKYEKGPFD-IFSVGGD------ISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRG  215 (309)
Q Consensus       146 ~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~-~~~~~~~------~~~~~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~  215 (309)
                      +.+++.++.+..  ++.|.+|++.... +.+. +..+...      ......+.++|+|+++.++. .++.|.+|+....
T Consensus       182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        182 FHPNQQYAYCVNELNSSVDVWQLKDPH-GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEeCCC-CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence            778777665553  6899999986321 1111 1121110      11223588999999888874 4789999998543


Q ss_pred             e-EeEEeeecCCCCCccceEEECCCCCEEEEEcC-CCcEEEEECC--CCce--EEEeecCCCCCcEEEE
Q 021648          216 T-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DGSVYAWSVR--SGKE--VASWMSFDTEPPVIKW  278 (309)
Q Consensus       216 ~-~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~-Dg~i~vwd~~--~~~~--~~~~~~~~~~v~~l~~  278 (309)
                      . .+......+. ......+.|+|||++|+++.. +++|.+|++.  ++..  +..+.. ...+.+++|
T Consensus       261 ~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~-g~~P~~~~~  327 (330)
T PRK11028        261 GSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV-GQGPMWVSV  327 (330)
T ss_pred             CCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc-CCCceEEEE
Confidence            2 1111111111 123456899999999998875 8999999884  3332  232322 344555554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=6.4e-18  Score=147.14  Aligned_cols=226  Identities=18%  Similarity=0.292  Sum_probs=158.7

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEecCCC-EEEEEcCCCCCcee
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPT-TVIYSSKNGWDESL   80 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~i   80 (309)
                      +-+.|.||+|-|+++.|+.+|.+|+|||.|..+.|||.-.-+.++.+. +|...|.++.|.|... .++.+.. | |..|
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA-g-Dk~i  119 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA-G-DKLI  119 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc-C-cceE
Confidence            445688999999999999999999999999999999998888888886 5777799999998543 4443332 3 8999


Q ss_pred             EEEEccC----------CceEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeee-eeeecCceeEEECC
Q 021648           81 RLLSLHD----------NKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQG-LLRVQGRPAAAYDD  148 (309)
Q Consensus        81 ~~~d~~~----------~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~-~~~~~~~~~~~~~~  148 (309)
                      +++|+.+          .+.+..+.-|.++|..++-.|++ +.|.+++.||+++-+|++....-. ......        
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~--------  191 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS--------  191 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH--------
Confidence            9999974          23456678899999999999987 799999999999999998653210 000000        


Q ss_pred             CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCC--------Ce---
Q 021648          149 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFR--------GT---  216 (309)
Q Consensus       149 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~--------~~---  216 (309)
                         .             +.          ......-...++++||.. .+|+.|+.|--+++||.+.        +.   
T Consensus       192 ---~-------------l~----------ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~  245 (758)
T KOG1310|consen  192 ---I-------------LV----------NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNT  245 (758)
T ss_pred             ---H-------------HH----------HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccC
Confidence               0             00          000111224567888854 7788899999999999421        11   


Q ss_pred             -------EeEEeeecCC---C---CC---ccceEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 021648          217 -------LLSTYNVKPV---S---RN---STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA  264 (309)
Q Consensus       217 -------~~~~~~~~~~---~---~~---~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~  264 (309)
                             .+..|.....   .   ..   .+.=+.|+|+|..|+..-....|+++|+..++...
T Consensus       246 ~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  246 CPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT  309 (758)
T ss_pred             CCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence                   1111111000   0   01   12336899999988887667789999998776543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=2.6e-16  Score=146.33  Aligned_cols=283  Identities=15%  Similarity=0.223  Sum_probs=187.6

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccc---cceeEEEEecCC--CEEEEEcCCCCCceeEEEE-
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK---YGVDLVCFTSHP--TTVIYSSKNGWDESLRLLS-   84 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~---~~v~~~~~~~~~--~~~~~~s~~g~d~~i~~~d-   84 (309)
                      +++-..+.|+|=...++++..--.|+|||.+.++++..|..+.   ..|+.+++-..-  ..+++++.   |+.||+|+ 
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~---dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASS---DGVIRIWKD 1140 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeecc---CceEEEecc
Confidence            3456678899988889888767799999999999887776554   347777776533  34566654   88999996 


Q ss_pred             ccCC--c--eEEE---eeecc----cCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeE----EECCC
Q 021648           85 LHDN--K--YLRY---FKGHH----DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA----AYDDQ  149 (309)
Q Consensus        85 ~~~~--~--~~~~---~~~h~----~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~----~~~~~  149 (309)
                      ....  +  .+..   +.++.    +.-.-++|.....+|+++|.=+.||+||....++...+........    .....
T Consensus      1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred             cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence            4442  2  2221   22221    1112346766656777777789999999988877666654432211    12233


Q ss_pred             CcEEEEE-ECCEEEEEECCCCCcC-CceEEEeCCCCCCCeEEEEccCCCE-EEEEeCCCcEEEEECCCCeEeEEeeec--
Q 021648          150 GLVFAVA-FGGYIRMFDARKYEKG-PFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGTLLSTYNVK--  224 (309)
Q Consensus       150 ~~~~~~~-~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~v~~s~dg~~-l~~~~~dg~v~i~d~~~~~~~~~~~~~--  224 (309)
                      +.++++| .||.+++||.|..... ....+..+....+|.-+.+-+.|-. +++++.||.|++||++.......+..-  
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence            4555555 6899999998864331 1122222222234777788887654 999999999999999875333322221  


Q ss_pred             CCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC-------CCCCcEEEECCCeeEEEEccce--EEEe
Q 021648          225 PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-------DTEPPVIKWTPGSLMFVTGSSE--LSFW  295 (309)
Q Consensus       225 ~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-------~~~v~~l~~~p~~~~l~s~~~d--~~~~  295 (309)
                      -.......++..+++...+|+|+. +.|.||++. |+.+..++.+       .+.+.|++|||-..++|.|+.|  +.++
T Consensus      1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred             cccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence            111224677889999999999999 999999995 5555444333       2456899999999999999877  6666


Q ss_pred             eec
Q 021648          296 IPD  298 (309)
Q Consensus       296 ~~~  298 (309)
                      ..+
T Consensus      1379 s~~ 1381 (1387)
T KOG1517|consen 1379 SCE 1381 (1387)
T ss_pred             ecC
Confidence            554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=3.1e-17  Score=138.76  Aligned_cols=201  Identities=17%  Similarity=0.188  Sum_probs=143.1

Q ss_pred             EEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe
Q 021648           15 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF   94 (309)
Q Consensus        15 ~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~   94 (309)
                      .+++|+++|..|+||+.||++|||+..+...+.....|...|..+.|+||++.+++.+.   | ..+||+.+++-.+...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~---d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA---D-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC---C-ceEEEEeccCchhhhc
Confidence            67899999999999999999999999888888888888888999999999999988764   5 7999999998554443


Q ss_pred             e--ecccCEEEEEecCCC-----CeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECC
Q 021648           95 K--GHHDRVVSLSLCSSK-----DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR  167 (309)
Q Consensus        95 ~--~h~~~v~~v~~~~~~-----~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  167 (309)
                      .  .-......+.|+.|+     +.++....-+.|+.||+                                  .+|+-.
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~----------------------------------~~w~~~  269 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI----------------------------------SLWSGS  269 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEe----------------------------------eeeccc
Confidence            3  122233444555444     11222222233333332                                  222210


Q ss_pred             CCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEc
Q 021648          168 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  247 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s  247 (309)
                      +.-    .....-.....+++++.|+||++++.|+.||.|.|++..+.+.++..  +..|...|..+.|+||.+++++.|
T Consensus       270 ~~l----~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v--k~aH~~~VT~ltF~Pdsr~~~svS  343 (398)
T KOG0771|consen  270 NFL----RLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV--KEAHLGFVTGLTFSPDSRYLASVS  343 (398)
T ss_pred             ccc----chhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee--hhhheeeeeeEEEcCCcCcccccc
Confidence            000    00000012246889999999999999999999999998876665543  345667889999999999999999


Q ss_pred             CCCcEEEEECCC
Q 021648          248 GDGSVYAWSVRS  259 (309)
Q Consensus       248 ~Dg~i~vwd~~~  259 (309)
                      .|..+.|..+.-
T Consensus       344 s~~~~~v~~l~v  355 (398)
T KOG0771|consen  344 SDNEAAVTKLAV  355 (398)
T ss_pred             cCCceeEEEEee
Confidence            999998887743

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=8.7e-18  Score=157.30  Aligned_cols=242  Identities=17%  Similarity=0.222  Sum_probs=182.7

Q ss_pred             cceEEEEeCCCCCE----EEEeeCCCcEEEEEcCC---C---ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648           12 GRISSMDFHKSSSY----LVTASDDESIRLYDVTA---A---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus        12 ~~V~~i~~s~~~~~----l~t~s~D~~v~iWd~~~---~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ...+.++|.+.+..    ||.|..||.|-+||...   +   +.+.+..-|...|..+.|++....++++.  +-|++|.
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG--a~~geI~  142 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG--ADDGEIL  142 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc--CCCCcEE
Confidence            45778999887765    89999999999999864   2   23556778888999999999776444332  2388999


Q ss_pred             EEEccCCceEEEe--eecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCc----eeEEECCCC--cE
Q 021648           82 LLSLHDNKYLRYF--KGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR----PAAAYDDQG--LV  152 (309)
Q Consensus        82 ~~d~~~~~~~~~~--~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~----~~~~~~~~~--~~  152 (309)
                      +||++.-+.-..+  ..-.+.|.+++|+.. ...|++++.+|.+.+||++..+.+..+.....    .....+++.  .+
T Consensus       143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql  222 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL  222 (1049)
T ss_pred             EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence            9999875543333  235678999999975 45789999999999999998866554433221    234455543  45


Q ss_pred             EEEEEC---CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCC
Q 021648          153 FAVAFG---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  228 (309)
Q Consensus       153 ~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~  228 (309)
                      ++++.|   -.|.+||+|.-.. +.  ..+.+|...+.++.+++.+ +++++++-|++|.+|+..+++.+.++-.   ..
T Consensus       223 ~~As~dd~~PviqlWDlR~ass-P~--k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~---~~  296 (1049)
T KOG0307|consen  223 LVASGDDSAPVIQLWDLRFASS-PL--KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA---QG  296 (1049)
T ss_pred             eeecCCCCCceeEeecccccCC-ch--hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC---CC
Confidence            555443   3799999987543 22  3346777889999999876 8999999999999999999999987643   45


Q ss_pred             CccceEEECCCC-CEEEEEcCCCcEEEEECCCCc
Q 021648          229 NSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       229 ~~~~~~~~sp~g-~~l~s~s~Dg~i~vwd~~~~~  261 (309)
                      +.+..+.|.|.. ..+++++-||.|.|+.+....
T Consensus       297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            678899999965 588999999999999997653

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=3e-17  Score=135.43  Aligned_cols=183  Identities=17%  Similarity=0.218  Sum_probs=135.2

Q ss_pred             CceeEEEEccCCceEEEeeecccCEEEEEecC--CCCeEEEecCCCcEEEeeCCCceeeeeeeecCc---eeEEEC--CC
Q 021648           77 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYD--DQ  149 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~---~~~~~~--~~  149 (309)
                      .++|++||..+++.+..+++|...++.+.|..  ....+.+|+.||+||+||+|.......+.....   +..+++  ..
T Consensus        49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck  128 (376)
T KOG1188|consen   49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK  128 (376)
T ss_pred             CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence            56899999999999999999999999999986  456799999999999999998776655543332   233333  36


Q ss_pred             CcEEEEEE-----CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648          150 GLVFAVAF-----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNV  223 (309)
Q Consensus       150 ~~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~~~~~~~~  223 (309)
                      +.+++++.     +..+.+||+|+.++. +..+ ...|..+|++++|.|. ..+|++|+.||-|.+||+.....-..+..
T Consensus       129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~-~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~  206 (376)
T KOG1188|consen  129 KNIIACGTELTRSDASVVLWDVRSEQQL-LRQL-NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH  206 (376)
T ss_pred             CCeEEeccccccCceEEEEEEeccccch-hhhh-hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH
Confidence            67888774     468999999986542 2222 2346679999999995 58899999999999999865432221111


Q ss_pred             cCCCCCccceEEECCCC-CEEEEEcCCCcEEEEECCCCc
Q 021648          224 KPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       224 ~~~~~~~~~~~~~sp~g-~~l~s~s~Dg~i~vwd~~~~~  261 (309)
                      .-.+...|..+.|..++ +.|.+-+.+++..+|++..+.
T Consensus       207 viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  207 VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            01123456678888776 568888889999999987654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.7e-15  Score=119.95  Aligned_cols=243  Identities=14%  Similarity=0.220  Sum_probs=160.8

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc----eeeeee----ccc-----cceeEEEEecCCCEEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT----CLKTIN----SKK-----YGVDLVCFTSHPTTVIY   70 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~----~~~~~~----~~~-----~~v~~~~~~~~~~~~~~   70 (309)
                      +..+++|.++|..++|.  ..+|++|+ ||.|+=|.-...+    +...++    .+.     -.+..+...|..+.++.
T Consensus        55 iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~  131 (325)
T KOG0649|consen   55 IVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF  131 (325)
T ss_pred             eeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE
Confidence            34568999999999998  45777886 5999999765322    222221    111     12556677777777776


Q ss_pred             EcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCC
Q 021648           71 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG  150 (309)
Q Consensus        71 ~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~  150 (309)
                      +.  | |+.+.-||+++|+..++++||++.|.++.--.....+.||+.||++|+||.+++++..++....+......+-+
T Consensus       132 Ag--G-D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g  208 (325)
T KOG0649|consen  132 AG--G-DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG  208 (325)
T ss_pred             ec--C-CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence            64  3 89999999999999999999999999998744455799999999999999999998877755433222111111


Q ss_pred             cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCc
Q 021648          151 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  230 (309)
Q Consensus       151 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  230 (309)
                      .                                 .+-+++.  +..++++| ....+.+|.+++.+....+.+.    .+
T Consensus       209 ~---------------------------------wigala~--~edWlvCG-gGp~lslwhLrsse~t~vfpip----a~  248 (325)
T KOG0649|consen  209 K---------------------------------WIGALAV--NEDWLVCG-GGPKLSLWHLRSSESTCVFPIP----AR  248 (325)
T ss_pred             c---------------------------------eeEEEec--cCceEEec-CCCceeEEeccCCCceEEEecc----cc
Confidence            1                                 1223333  34556555 4456789999988887776542    34


Q ss_pred             cceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCC-eeEEEEccceEEEe
Q 021648          231 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-SLMFVTGSSELSFW  295 (309)
Q Consensus       231 ~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~-~~~l~s~~~d~~~~  295 (309)
                      +-.+.|  +...+++++....+.-|.+. |..-...+.-+.......|+-. -+.+..++.-+++.
T Consensus       249 v~~v~F--~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~  311 (325)
T KOG0649|consen  249 VHLVDF--VDDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLH  311 (325)
T ss_pred             eeEeee--ecceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeee
Confidence            445677  45688899988899999884 4443333332223444444333 34444455444444

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=7.7e-18  Score=157.65  Aligned_cols=272  Identities=15%  Similarity=0.246  Sum_probs=182.7

Q ss_pred             EEEeCCCCC-EEEEe----------eCCCcEEEEEcCC--Cc----eeeeeeccccceeEEEEecCCCE---EEEEcCCC
Q 021648           16 SMDFHKSSS-YLVTA----------SDDESIRLYDVTA--AT----CLKTINSKKYGVDLVCFTSHPTT---VIYSSKNG   75 (309)
Q Consensus        16 ~i~~s~~~~-~l~t~----------s~D~~v~iWd~~~--~~----~~~~~~~~~~~v~~~~~~~~~~~---~~~~s~~g   75 (309)
                      .++|+|++. ++|+|          |.+.++-||.+..  .+    ..-.+. ..+....++|.+.+..   ++++.  .
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG--~   87 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGG--L   87 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecc--c
Confidence            568999886 44443          3455667775542  22    111111 2345667888776554   45543  4


Q ss_pred             CCceeEEEEccC---C---ceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeee---cC-ceeE
Q 021648           76 WDESLRLLSLHD---N---KYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRV---QG-RPAA  144 (309)
Q Consensus        76 ~d~~i~~~d~~~---~---~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~---~~-~~~~  144 (309)
                      .||.|-+||...   +   +.+..+..|++.|++++|++. ++.|++|+.||.|.|||+.....-.....   .. ..+.
T Consensus        88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l  167 (1049)
T KOG0307|consen   88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL  167 (1049)
T ss_pred             cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence            589999999754   2   246677889999999999986 55999999999999999865332212110   11 1112


Q ss_pred             EECC-CCcEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCC---cEEEEECCC-CeE
Q 021648          145 AYDD-QGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEG---HIHVLDSFR-GTL  217 (309)
Q Consensus       145 ~~~~-~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg---~v~i~d~~~-~~~  217 (309)
                      .... -..+++.+ ..+++-+||+|..+ +.++ +...+....+..++++|++ ..+++++.|.   .|.+||++- ...
T Consensus       168 sWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~-ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP  245 (1049)
T KOG0307|consen  168 SWNRKVSHILASGSPSGRAVIWDLRKKK-PIIK-LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP  245 (1049)
T ss_pred             ccchhhhHHhhccCCCCCceeccccCCC-cccc-cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence            2221 12455555 46799999999753 2222 2333333457889999987 4455555543   699999764 334


Q ss_pred             eEEeeecCCCCCccceEEECCCC-CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCee-EEEEccce--EE
Q 021648          218 LSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGSSE--LS  293 (309)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~sp~g-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~~~d--~~  293 (309)
                      +++++   .|...++++.|++.+ ++++|++.|+.|.+|+..+++.+.++..-..-+..+.|.|... .++.++-|  +.
T Consensus       246 ~k~~~---~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~  322 (1049)
T KOG0307|consen  246 LKILE---GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS  322 (1049)
T ss_pred             hhhhc---ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence            44443   466788999999966 9999999999999999999999999988777889999999876 56666656  44


Q ss_pred             Ee
Q 021648          294 FW  295 (309)
Q Consensus       294 ~~  295 (309)
                      ++
T Consensus       323 I~  324 (1049)
T KOG0307|consen  323 IY  324 (1049)
T ss_pred             ee
Confidence            44

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=5.1e-17  Score=138.18  Aligned_cols=206  Identities=14%  Similarity=0.196  Sum_probs=145.2

Q ss_pred             cCCCcceEEEEeCCC-CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc
Q 021648            8 RDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   86 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~-~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~   86 (309)
                      .+|+.+|.+++|+-. .+.|||||.|.||++||+++|+|..++..|...|..+.|+|....++..  +++|+++++.|.+
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLs--Gs~D~~V~l~D~R  317 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLS--GSYDGTVALKDCR  317 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEe--ccccceEEeeecc
Confidence            379999999999865 4689999999999999999999999999999999999999966554443  2469999999987


Q ss_pred             CCceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCc-eeeeeeeecC--ceeEEEC--CCCcEEEEEECCE
Q 021648           87 DNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAE-KCQGLLRVQG--RPAAAYD--DQGLVFAVAFGGY  160 (309)
Q Consensus        87 ~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~-~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~  160 (309)
                      ...+....=.-.+.|-.+.|.|. ...++.+..||+++.+|+|.. ++...++.+.  .....+.  .++.+.+++.++.
T Consensus       318 ~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~  397 (463)
T KOG0270|consen  318 DPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV  397 (463)
T ss_pred             CccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence            42221111123457788888875 457888899999999999976 6666665443  2334443  3455666677899


Q ss_pred             EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeE
Q 021648          161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTL  217 (309)
Q Consensus       161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~  217 (309)
                      +++|++.............  ......|.++.|+- -.++.|+..+.++|||..+...
T Consensus       398 Vklw~~~~~~~~~v~~~~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  398 VKLWKFDVDSPKSVKEHSF--KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             EEEEeecCCCCcccccccc--cccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            9999986543221111111  11123445556654 4567778888899999876543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=6.4e-17  Score=133.50  Aligned_cols=257  Identities=16%  Similarity=0.265  Sum_probs=159.6

Q ss_pred             ccceEecCCCcceEEEEeCC--CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccc-eeEEEEec--CCCEEEEEcC-CC
Q 021648            2 EVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAATCLKTINSKKYG-VDLVCFTS--HPTTVIYSSK-NG   75 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~--~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~-v~~~~~~~--~~~~~~~~s~-~g   75 (309)
                      ..+..|++|.+.++.++|..  ....+.||+.||+||+||+.+......+...+++ -...||..  ....++++.. .+
T Consensus        61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~  140 (376)
T KOG1188|consen   61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTR  140 (376)
T ss_pred             hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccccc
Confidence            35678899999999999976  4578999999999999999876555444333222 22344444  3334444321 13


Q ss_pred             CCceeEEEEccCCce-EEEe-eecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeee----eeeecC-ceeEEEC
Q 021648           76 WDESLRLLSLHDNKY-LRYF-KGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQG----LLRVQG-RPAAAYD  147 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~-~~~~-~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~----~~~~~~-~~~~~~~  147 (309)
                      .|..+.+||+...+. ++.+ ..|.+.|+++.|+| +.+.|+|||-||.|.++|++......    ++.... ...+.+.
T Consensus       141 s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~  220 (376)
T KOG1188|consen  141 SDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWL  220 (376)
T ss_pred             CceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeee
Confidence            477899999987665 5443 67999999999999 46799999999999999987553322    222211 1223444


Q ss_pred             CCC--cEEEEEECCEEEEEECCCCCcC-CceE--EEeCC---CCCCCeEE-EEcc-CCCEEEEEeC-CCcEEEEEC---C
Q 021648          148 DQG--LVFAVAFGGYIRMFDARKYEKG-PFDI--FSVGG---DISDANVV-KFSN-DGRLMLLTTM-EGHIHVLDS---F  213 (309)
Q Consensus       148 ~~~--~~~~~~~~~~i~~~d~~~~~~~-~~~~--~~~~~---~~~~~~~v-~~s~-dg~~l~~~~~-dg~v~i~d~---~  213 (309)
                      .++  ++++...+....+|++...... .+..  .....   ..+.-..| +.+| +....+.++. -++..++-.   .
T Consensus       221 ~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~  300 (376)
T KOG1188|consen  221 SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTS  300 (376)
T ss_pred             cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecc
Confidence            454  6888888999999987653210 0000  00000   00000111 2334 3344444444 455555432   3


Q ss_pred             CCeEeEEee-ecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648          214 RGTLLSTYN-VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       214 ~~~~~~~~~-~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~  258 (309)
                      ++..+.... .+..+...|.++.|...+.++.|||+||.+.+|..+
T Consensus       301 s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  301 SGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             cccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence            344333222 222344456678888889999999999999999963

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=3.7e-15  Score=134.86  Aligned_cols=223  Identities=13%  Similarity=0.152  Sum_probs=150.0

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeC---CCcEEEEEcCCCceee--eeeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~---D~~v~iWd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      +++..+...+.+.+|+|||+.|+..+.   +..+.+||+.+|+...  .+.++   +...+|+|+++.+++......+..
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~  268 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLN  268 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcE
Confidence            344556678899999999999886653   4578999998876433  23332   345789999999887643222457


Q ss_pred             eEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCC-CcEEEe--eCCCceeeeeeeecCceeEEECCCCcEEEEE
Q 021648           80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-RTVLLW--DQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA  156 (309)
Q Consensus        80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D-g~v~~W--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (309)
                      |.+||+++++... +..+...+....|+|||+.|+..+.+ +...+|  |+.++... .                     
T Consensus       269 I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~---------------------  325 (429)
T PRK03629        269 LYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-R---------------------  325 (429)
T ss_pred             EEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-E---------------------
Confidence            9999998877544 44445567889999999988766643 444555  33222110 0                     


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC---CcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLE  233 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~  233 (309)
                            +              ..  .........+||||+.++..+.+   ..|.+||+.+++... +..  .  .....
T Consensus       326 ------l--------------t~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~--~--~~~~~  378 (429)
T PRK03629        326 ------I--------------TW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD--T--FLDET  378 (429)
T ss_pred             ------e--------------ec--CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC--C--CCCCC
Confidence                  0              00  00112346799999998876543   358889988776432 221  1  11235


Q ss_pred             EEECCCCCEEEEEcCCCc---EEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648          234 ASFSPEGMFVISGSGDGS---VYAWSVRSGKEVASWMSFDTEPPVIKWTPG  281 (309)
Q Consensus       234 ~~~sp~g~~l~s~s~Dg~---i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~  281 (309)
                      ..|+|||++|+.++.|+.   ++++++ +++....+..|.+.+...+|+|-
T Consensus       379 p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        379 PSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             ceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence            689999999999998875   677777 46666777788888999999983

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=8.7e-16  Score=124.42  Aligned_cols=246  Identities=15%  Similarity=0.223  Sum_probs=174.3

Q ss_pred             ceEEEEeC--CC-CCEEEEeeC----CCcEEEEEc--CCCceeeee-eccccceeEEEEecCCC----EEEEEcCCCCCc
Q 021648           13 RISSMDFH--KS-SSYLVTASD----DESIRLYDV--TAATCLKTI-NSKKYGVDLVCFTSHPT----TVIYSSKNGWDE   78 (309)
Q Consensus        13 ~V~~i~~s--~~-~~~l~t~s~----D~~v~iWd~--~~~~~~~~~-~~~~~~v~~~~~~~~~~----~~~~~s~~g~d~   78 (309)
                      .+.++.|+  |+ +.+||.||.    .+.|.|-.+  ++++.+..- ..|.++++.+-|.|+..    .+++++    +.
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs----~D  121 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS----SD  121 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc----cC
Confidence            46788888  33 357888884    456666544  355554332 46889999999999874    244443    34


Q ss_pred             eeEEEEccC--Cce--EEE-----eeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECC
Q 021648           79 SLRLLSLHD--NKY--LRY-----FKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD  148 (309)
Q Consensus        79 ~i~~~d~~~--~~~--~~~-----~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~  148 (309)
                      .+|+|.+..  ++.  ...     -..+.+++++.+|+. +.+++.++|-|-++-+||++++... .++    ..     
T Consensus       122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~-~vk----TQ-----  191 (364)
T KOG0290|consen  122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG-TVK----TQ-----  191 (364)
T ss_pred             eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc-cee----eE-----
Confidence            799998763  221  111     234667899999985 7889999999999999999876210 000    00     


Q ss_pred             CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeE-EeeecCC
Q 021648          149 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLS-TYNVKPV  226 (309)
Q Consensus       149 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~  226 (309)
                         +                           -.|...|..++|+.++ ..+++.+.||.||+||++..+--. .|+ .+.
T Consensus       192 ---L---------------------------IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE-~p~  240 (364)
T KOG0290|consen  192 ---L---------------------------IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE-DPS  240 (364)
T ss_pred             ---E---------------------------EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec-CCC
Confidence               0                           0133456778888866 578889999999999998644322 122 122


Q ss_pred             CCCccceEEECCC-CCEEEEEcCCC-cEEEEECCC-CceEEEeecCCCCCcEEEECCC-eeEEEEccceEEEeeecCCCc
Q 021648          227 SRNSTLEASFSPE-GMFVISGSGDG-SVYAWSVRS-GKEVASWMSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDLSKL  302 (309)
Q Consensus       227 ~~~~~~~~~~sp~-g~~l~s~s~Dg-~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~p~-~~~l~s~~~d~~~~~~~~~~~  302 (309)
                      ...+..+++|+++ -+++||-..|. .|.|-|++. ..++..+..|.+.|+.++|.|. ...+++++.|++.-.||+.-+
T Consensus       241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            2456778999984 68999988875 799999986 4578899999999999999996 579999999999988888654


Q ss_pred             c
Q 021648          303 G  303 (309)
Q Consensus       303 ~  303 (309)
                      .
T Consensus       321 ~  321 (364)
T KOG0290|consen  321 P  321 (364)
T ss_pred             c
Confidence            3

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=1.2e-16  Score=139.66  Aligned_cols=272  Identities=17%  Similarity=0.187  Sum_probs=169.3

Q ss_pred             EEeCCCC--CEEEEeeCCCcEEEE--EcCCCc--------------------eeeeeeccccceeEEEEecCCCEEEEEc
Q 021648           17 MDFHKSS--SYLVTASDDESIRLY--DVTAAT--------------------CLKTINSKKYGVDLVCFTSHPTTVIYSS   72 (309)
Q Consensus        17 i~~s~~~--~~l~t~s~D~~v~iW--d~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s   72 (309)
                      |++-|.+  +..++...|.-.++|  ++....                    ...++..|...++.+.|.+...-++.++
T Consensus       234 i~~~~~~~k~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~s  313 (577)
T KOG0642|consen  234 ITNPPEGTKSISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITAS  313 (577)
T ss_pred             ccCCcccCCCccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEec
Confidence            4444433  456677777777888  432111                    1124456666777888888777788776


Q ss_pred             CCCCCceeEEEEccC--------CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc------e----eee
Q 021648           73 KNGWDESLRLLSLHD--------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE------K----CQG  134 (309)
Q Consensus        73 ~~g~d~~i~~~d~~~--------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~------~----~~~  134 (309)
                      .   |+++++|+++.        -+++.+|.+|.++|.++++.+++..+.||+.||+|++|++-.+      .    ...
T Consensus       314 e---d~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~  390 (577)
T KOG0642|consen  314 E---DGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG  390 (577)
T ss_pred             c---ccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence            5   88999999932        1468899999999999999999999999999999999964311      1    001


Q ss_pred             eeeecCce--eEEEC-CCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCC---CCeEEEEccCCCEEEEEeCCCcEE
Q 021648          135 LLRVQGRP--AAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDIS---DANVVKFSNDGRLMLLTTMEGHIH  208 (309)
Q Consensus       135 ~~~~~~~~--~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~~~v~~s~dg~~l~~~~~dg~v~  208 (309)
                      .+......  ...++ ....++.++.||++++|+......      ..-+...   .-.++.+  ....++-...+....
T Consensus       391 ~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~------~~f~~~~e~g~Plsvd~--~ss~~a~~~~s~~~~  462 (577)
T KOG0642|consen  391 TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP------CTFGEPKEHGYPLSVDR--TSSRPAHSLASFRFG  462 (577)
T ss_pred             ceeccccceeeeeecccccceeeecCCceEEeeccCCcCc------cccCCccccCCcceEee--ccchhHhhhhhcccc
Confidence            11111111  22333 233566666777777776543110      1111110   0011111  111111111111222


Q ss_pred             ---EEECCCCeEeEEeeec--CCC--CCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648          209 ---VLDSFRGTLLSTYNVK--PVS--RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG  281 (309)
Q Consensus       209 ---i~d~~~~~~~~~~~~~--~~~--~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~  281 (309)
                         +.|......+..+...  +..  ...+..+.++|.+.+.+++.+|+.|+++|..+++.+.....|...++++++.|+
T Consensus       463 ~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~n  542 (577)
T KOG0642|consen  463 YTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPN  542 (577)
T ss_pred             cccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCC
Confidence               2222222222222111  111  123446778899999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccceEEEeeecC
Q 021648          282 SLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       282 ~~~l~s~~~d~~~~~~~~  299 (309)
                      |..|.+++.|+++..|.+
T Consensus       543 g~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  543 GPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             CceEEeecCCceeehhhc
Confidence            999999999977777665

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.3e-14  Score=132.84  Aligned_cols=286  Identities=13%  Similarity=0.177  Sum_probs=192.0

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC--C--ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--A--TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      .|...+++.+++|.++++|+|..||.|.+|.--.  +  ...+.+.-|...|.+++|+++|.+++++   |+++.+-+|.
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSG---G~E~VLv~Wq  279 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSG---GREGVLVLWQ  279 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeec---ccceEEEEEe
Confidence            4777899999999999999999999999995322  2  3346778888899999999999999975   6689999999


Q ss_pred             ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeee---ec---------C-ceeEEECC-CC
Q 021648           85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQ---------G-RPAAAYDD-QG  150 (309)
Q Consensus        85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~---~~---------~-~~~~~~~~-~~  150 (309)
                      +++++ .+.+..-.++|..+.++||+...+....|..|.+-...+......+.   ..         . ......+| .+
T Consensus       280 ~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  280 LETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             ecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence            99988 55566677899999999999988888889999987653322221111   10         0 11234444 34


Q ss_pred             cEEEEEECCEEEEEECCCCCc-CCceEEEeCCCC------CCCeEEEEccCCCEEEEEeC--------CC--cEEEEECC
Q 021648          151 LVFAVAFGGYIRMFDARKYEK-GPFDIFSVGGDI------SDANVVKFSNDGRLMLLTTM--------EG--HIHVLDSF  213 (309)
Q Consensus       151 ~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~------~~~~~v~~s~dg~~l~~~~~--------dg--~v~i~d~~  213 (309)
                      ..+..+..+.|.+||+-+... ..+++.....+.      -.+..++.+..|.++++.-.        ||  .+++|--.
T Consensus       359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence            455556678999999765332 111111111111      13456677778888887642        33  45667543


Q ss_pred             CCe---EeEEeeecCCCCCccceEEE-CCCCC-EEEEEcCCCcEEEEECCCC----------ceEEEeecCCCCCcEEEE
Q 021648          214 RGT---LLSTYNVKPVSRNSTLEASF-SPEGM-FVISGSGDGSVYAWSVRSG----------KEVASWMSFDTEPPVIKW  278 (309)
Q Consensus       214 ~~~---~~~~~~~~~~~~~~~~~~~~-sp~g~-~l~s~s~Dg~i~vwd~~~~----------~~~~~~~~~~~~v~~l~~  278 (309)
                      ...   .+.+--..| |.......+| +|... ..+++|.||.++||-...-          .+.+.-..|..+++.++|
T Consensus       439 ~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f  517 (792)
T KOG1963|consen  439 PNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF  517 (792)
T ss_pred             CCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence            221   222211122 3444444444 44433 8999999999999998321          122211237889999999


Q ss_pred             CCCeeEEEEccce-EEEeeecC
Q 021648          279 TPGSLMFVTGSSE-LSFWIPDL  299 (309)
Q Consensus       279 ~p~~~~l~s~~~d-~~~~~~~~  299 (309)
                      +.||.+++.+-++ +.+|.++-
T Consensus       518 s~dGslla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  518 SQDGSLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             cCCCcEEEEecCCEEEEecCCC
Confidence            9999888777666 99998765

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.71  E-value=7.7e-16  Score=126.43  Aligned_cols=222  Identities=15%  Similarity=0.239  Sum_probs=155.7

Q ss_pred             CCCCEEEEeeCCCcEEEEEcCCCceeeeeec--ccc---ceeEEEEecCCCEEEEEcCCCCCceeEEEEcc-CCc--eEE
Q 021648           21 KSSSYLVTASDDESIRLYDVTAATCLKTINS--KKY---GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNK--YLR   92 (309)
Q Consensus        21 ~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~-~~~--~~~   92 (309)
                      |+..++|+.+.|.-|.+||+-+|+....++.  |..   ...+++|+|||++++++    +...||++|+. .|.  .+.
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG----ykrcirvFdt~RpGr~c~vy  196 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG----YKRCIRVFDTSRPGRDCPVY  196 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec----ccceEEEeeccCCCCCCcch
Confidence            7788999999999999999999998877654  222   34679999999999865    47899999984 343  222


Q ss_pred             Eee-----ecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeec--CceeEEECCCC-cEEEEE-ECCEEE
Q 021648           93 YFK-----GHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQG-LVFAVA-FGGYIR  162 (309)
Q Consensus        93 ~~~-----~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~-~~~~i~  162 (309)
                      ...     +..+-+.+++|+| +.+.++.++.-.++-|+.-....+..++..+  +..-..+.+++ .+++++ .+..|-
T Consensus       197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl  276 (406)
T KOG2919|consen  197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKIL  276 (406)
T ss_pred             hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEE
Confidence            222     3367788999999 4568999998887777654455544444322  23445566655 455544 378999


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-CeEeEEeeecCCCCCccceEEECCCCC
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGM  241 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~  241 (309)
                      .||+|....+-+.+...-+..++-..+...|+|++|++|+.||.|++||+.+ ++....+.   .+...+..++++|.-.
T Consensus       277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~---~~sd~vNgvslnP~mp  353 (406)
T KOG2919|consen  277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG---NYSDTVNGVSLNPIMP  353 (406)
T ss_pred             EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc---cccccccceecCcccc
Confidence            9999986554332222222223334456789999999999999999999987 55343332   3445677899999988


Q ss_pred             EEEEEcCC
Q 021648          242 FVISGSGD  249 (309)
Q Consensus       242 ~l~s~s~D  249 (309)
                      .+|+++..
T Consensus       354 ilatssGq  361 (406)
T KOG2919|consen  354 ILATSSGQ  361 (406)
T ss_pred             eeeeccCc
Confidence            88888754

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=2.8e-15  Score=135.83  Aligned_cols=204  Identities=16%  Similarity=0.184  Sum_probs=135.5

Q ss_pred             CCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce--EEEeeecccCEEEEEecC
Q 021648           31 DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--LRYFKGHHDRVVSLSLCS  108 (309)
Q Consensus        31 ~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~--~~~~~~h~~~v~~v~~~~  108 (309)
                      .+..|.+||.+.. ..+.+..+...+...+|+|+++.+++++..+.+.+|.+||+.+++.  +..+.+|   ...+.|+|
T Consensus       182 ~~~~i~i~d~dg~-~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP  257 (429)
T PRK01742        182 QPYEVRVADYDGF-NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP  257 (429)
T ss_pred             ceEEEEEECCCCC-CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC
Confidence            3579999998644 4566666677788999999999998876543356899999988753  3334444   34689999


Q ss_pred             CCCeEEEec-CCCcEEEee--CCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCC
Q 021648          109 SKDCFISGS-LDRTVLLWD--QRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD  185 (309)
Q Consensus       109 ~~~~l~s~s-~Dg~v~~Wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  185 (309)
                      ||+.|+.++ .||.+.+|.  +.++....                                            +..+...
T Consensus       258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~--------------------------------------------lt~~~~~  293 (429)
T PRK01742        258 DGSRLAFASSKDGVLNIYVMGANGGTPSQ--------------------------------------------LTSGAGN  293 (429)
T ss_pred             CCCEEEEEEecCCcEEEEEEECCCCCeEe--------------------------------------------eccCCCC
Confidence            999887764 688776663  33221100                                            0001122


Q ss_pred             CeEEEEccCCCEEEEEe-CCCcEEEEECCCC-eEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 021648          186 ANVVKFSNDGRLMLLTT-MEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV  263 (309)
Q Consensus       186 ~~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~  263 (309)
                      +...+|+|||+.++..+ .+|..+||++... .......    +..  ....|+|||++|+.++.++ +.+||+.+++..
T Consensus       294 ~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~----~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~  366 (429)
T PRK01742        294 NTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG----GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE  366 (429)
T ss_pred             cCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec----CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE
Confidence            45678999999877655 4677888875432 2122211    111  3468999999999988765 666999887654


Q ss_pred             EEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          264 ASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       264 ~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      .....+  ....++|+||+++++.++.+
T Consensus       367 ~lt~~~--~~~~~~~sPdG~~i~~~s~~  392 (429)
T PRK01742        367 VLSSTF--LDESPSISPNGIMIIYSSTQ  392 (429)
T ss_pred             EecCCC--CCCCceECCCCCEEEEEEcC
Confidence            322222  23567899999999888765

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.71  E-value=3.2e-16  Score=132.05  Aligned_cols=213  Identities=21%  Similarity=0.284  Sum_probs=152.0

Q ss_pred             cceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648           12 GRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   90 (309)
Q Consensus        12 ~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~   90 (309)
                      .+|.++.|.+++. .||||+.|..||||-+..++.                  .          +.+..|        ++
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~------------------~----------~~~~~V--------~y   57 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEP------------------G----------GGDMKV--------EY   57 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCC------------------C----------CCceeE--------EE
Confidence            4799999998876 999999999999998764320                  0          001122        23


Q ss_pred             EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCC
Q 021648           91 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE  170 (309)
Q Consensus        91 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  170 (309)
                      +.++..|+..|+.|.|+|+|..|+||+.+|.+.+|-....+..     .... ..-..+.                    
T Consensus        58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-----~~d~-e~~~~ke--------------------  111 (434)
T KOG1009|consen   58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-----DADT-EADLNKE--------------------  111 (434)
T ss_pred             eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-----cccc-hhhhCcc--------------------
Confidence            4567789999999999999999999999999999964321110     0000 0000000                    


Q ss_pred             cCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC
Q 021648          171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG  250 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg  250 (309)
                       .-.....+.++..++..++++||+.++++++.|..+++||...|.++..+.   .|...+..++|.|-++++++-|.|.
T Consensus       112 -~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~---dh~~yvqgvawDpl~qyv~s~s~dr  187 (434)
T KOG1009|consen  112 -KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD---DHEHYVQGVAWDPLNQYVASKSSDR  187 (434)
T ss_pred             -ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc---ccccccceeecchhhhhhhhhccCc
Confidence             011123345567788899999999999999999999999999999887655   3556778899999999999999999


Q ss_pred             cEEEEECCCCceEEEe-----e--------------cCC----CCCcEEEECCCeeEEEEccc
Q 021648          251 SVYAWSVRSGKEVASW-----M--------------SFD----TEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       251 ~i~vwd~~~~~~~~~~-----~--------------~~~----~~v~~l~~~p~~~~l~s~~~  290 (309)
                      ..+++++...+.+...     .              -|.    .....++|+|+|.++++...
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag  250 (434)
T KOG1009|consen  188 HPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG  250 (434)
T ss_pred             ccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence            8888887654322111     0              011    22345899999999988654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.71  E-value=3.6e-16  Score=136.02  Aligned_cols=118  Identities=19%  Similarity=0.322  Sum_probs=101.5

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      +...+|.++|.+-.|+|||.-|+|+|.||.|++|. .+|-...++.....+|.+++|.|+.+.++++..    +.+.+-.
T Consensus        98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g----~h~~IKp  172 (737)
T KOG1524|consen   98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG----GHISIKP  172 (737)
T ss_pred             hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC----CeEEEee
Confidence            44578999999999999999999999999999997 456555666666678999999999999998852    4577777


Q ss_pred             ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeC
Q 021648           85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ  127 (309)
Q Consensus        85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~  127 (309)
                      +..+..+-..+.|.+-|.+++|++.++.++||+.|-..++||-
T Consensus       173 L~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~  215 (737)
T KOG1524|consen  173 LAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA  215 (737)
T ss_pred             cccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc
Confidence            7666666667899999999999999999999999999999995

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.71  E-value=1.1e-14  Score=132.51  Aligned_cols=264  Identities=14%  Similarity=0.185  Sum_probs=175.7

Q ss_pred             CCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce--EEE----eeecccCEEEEE
Q 021648           32 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--LRY----FKGHHDRVVSLS  105 (309)
Q Consensus        32 D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~--~~~----~~~h~~~v~~v~  105 (309)
                      ++.+-||++.....-+....-+..|.+++|+|....++++.  .++|+|.+||+..+..  ...    ...|.++|+.+.
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG--~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv  298 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGG--CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV  298 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEee--ccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence            34789999986533222223345689999999666666553  3589999999987654  222    245889999999


Q ss_pred             ecCC--CCeEEEecCCCcEEEeeCCCcee-eeee----ee---------cCceeEEEC--CCCcEEEEEECCEEEEEECC
Q 021648          106 LCSS--KDCFISGSLDRTVLLWDQRAEKC-QGLL----RV---------QGRPAAAYD--DQGLVFAVAFGGYIRMFDAR  167 (309)
Q Consensus       106 ~~~~--~~~l~s~s~Dg~v~~Wd~~~~~~-~~~~----~~---------~~~~~~~~~--~~~~~~~~~~~~~i~~~d~~  167 (309)
                      |..+  +.-|+|+|.||.|..|+++.-.. ...+    ..         .......+.  +...++.++.+|.|.--.-.
T Consensus       299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~  378 (555)
T KOG1587|consen  299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK  378 (555)
T ss_pred             EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence            9754  34599999999999998764322 1100    00         011223333  33456666677877764433


Q ss_pred             CCCcCC---ce-EEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC-CCeEeEEeeecCCCCCccceEEECCC-CC
Q 021648          168 KYEKGP---FD-IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPE-GM  241 (309)
Q Consensus       168 ~~~~~~---~~-~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~sp~-g~  241 (309)
                      .++...   ++ +.....+...+.++.++|=+..+...+.|-+|+||... ...++..+..   +...+.+++|||- -.
T Consensus       379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~---~~~~v~~vaWSptrpa  455 (555)
T KOG1587|consen  379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS---SPDYVTDVAWSPTRPA  455 (555)
T ss_pred             CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh---ccceeeeeEEcCcCce
Confidence            332222   11 12333456788999999977666666569999999876 4444433332   2344788999996 47


Q ss_pred             EEEEEcCCCcEEEEECCC--CceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCC
Q 021648          242 FVISGSGDGSVYAWSVRS--GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS  300 (309)
Q Consensus       242 ~l~s~s~Dg~i~vwd~~~--~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~  300 (309)
                      .++++..||.|.+||+..  .+++.+.+.+....+.+.|+++++.++.|....++++.+++
T Consensus       456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            889999999999999954  34566665566677889999999999999998777766663

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=3.5e-15  Score=130.91  Aligned_cols=260  Identities=19%  Similarity=0.286  Sum_probs=180.3

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEE-EEeeCCCcEEEEEcCCCceee----------------------------eeecc
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLK----------------------------TINSK   52 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l-~t~s~D~~v~iWd~~~~~~~~----------------------------~~~~~   52 (309)
                      |+++.|. |..+-+.|..+|||+|+ |||-+-=.|++||+.......                            +++.|
T Consensus        43 eLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH  121 (703)
T KOG2321|consen   43 ELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH  121 (703)
T ss_pred             HHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence            4555564 68888999999999985 677778899999997543221                            11212


Q ss_pred             cc-------ce----eEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCc
Q 021648           53 KY-------GV----DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT  121 (309)
Q Consensus        53 ~~-------~v----~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~  121 (309)
                      ..       .+    ..++++.-.-.++++.+   ...|.-++++.|..+..|.--.+.+++|..++-..+|+.|+.||.
T Consensus       122 ak~G~hy~~RIP~~GRDm~y~~~scDly~~gs---g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~  198 (703)
T KOG2321|consen  122 AKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGS---GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGV  198 (703)
T ss_pred             hhcCeeeeeecCcCCccccccCCCccEEEeec---CcceEEEEccccccccccccccccceeeeecCccceEEecccCce
Confidence            10       01    12223222223333332   346888899999999988888899999999998889999999999


Q ss_pred             EEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEE
Q 021648          122 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT  201 (309)
Q Consensus       122 v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~  201 (309)
                      |.+||++.......+......  .                         ..+     -......++++.|+.+|=.+++|
T Consensus       199 VEfwDpR~ksrv~~l~~~~~v--~-------------------------s~p-----g~~~~~svTal~F~d~gL~~aVG  246 (703)
T KOG2321|consen  199 VEFWDPRDKSRVGTLDAASSV--N-------------------------SHP-----GGDAAPSVTALKFRDDGLHVAVG  246 (703)
T ss_pred             EEEecchhhhhheeeeccccc--C-------------------------CCc-----cccccCcceEEEecCCceeEEee
Confidence            999999877655444322110  0                         000     00112357899999999999999


Q ss_pred             eCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC--CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEEC
Q 021648          202 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG--MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT  279 (309)
Q Consensus       202 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g--~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~  279 (309)
                      +.+|.|.|+|+++.+++..-. + ...-++..+.|.+.+  ..++|. ....++|||-.+|+....+.. +..++.+++-
T Consensus       247 ts~G~v~iyDLRa~~pl~~kd-h-~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~  322 (703)
T KOG2321|consen  247 TSTGSVLIYDLRASKPLLVKD-H-GYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFV  322 (703)
T ss_pred             ccCCcEEEEEcccCCceeecc-c-CCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeee
Confidence            999999999999877665332 1 223466778897763  444444 335789999999998887644 4469999999


Q ss_pred             CCeeEEEEccce---EEEeeecCCC
Q 021648          280 PGSLMFVTGSSE---LSFWIPDLSK  301 (309)
Q Consensus       280 p~~~~l~s~~~d---~~~~~~~~~~  301 (309)
                      |++-++.+|-..   ..++.|+|..
T Consensus       323 p~sGm~f~Ane~~~m~~yyiP~LGP  347 (703)
T KOG2321|consen  323 PGSGMFFTANESSKMHTYYIPSLGP  347 (703)
T ss_pred             cCCceEEEecCCCcceeEEccccCC
Confidence            998777776553   7778888854

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=1.4e-14  Score=131.43  Aligned_cols=225  Identities=16%  Similarity=0.167  Sum_probs=148.8

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCC---CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D---~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      .+++..|...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.... ...........|+|+++.++++....-+..|
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I  274 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRRLALTLSRDGNPEI  274 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence            34566677789999999999999988754   3699999988765432 2222234467899999988765332225679


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecC-CCc--EEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEE
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF  157 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~--v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (309)
                      .+||+.+++. ..+..|.......+|+||++.|+..+. ++.  +.++|+.+++...                       
T Consensus       275 y~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-----------------------  330 (433)
T PRK04922        275 YVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-----------------------  330 (433)
T ss_pred             EEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-----------------------
Confidence            9999988764 445556656678899999998876653 444  3333333221100                       


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC---cEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                                         ....+  ......++||||+.++..+.++   .|.+||+.+++.. .+. .   .......
T Consensus       331 -------------------lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~---~~~~~~p  384 (433)
T PRK04922        331 -------------------LTFQG--NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-P---GSLDESP  384 (433)
T ss_pred             -------------------eecCC--CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-C---CCCCCCc
Confidence                               00001  1122468999999998765443   6999998877654 222 1   1123456


Q ss_pred             EECCCCCEEEEEcCC---CcEEEEECCCCceEEEeecCCCCCcEEEECC
Q 021648          235 SFSPEGMFVISGSGD---GSVYAWSVRSGKEVASWMSFDTEPPVIKWTP  280 (309)
Q Consensus       235 ~~sp~g~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p  280 (309)
                      .|+|||++|+..+.+   +.|+++++. +.....+..+.+.+...+|+|
T Consensus       385 ~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        385 SFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            899999998887764   368888885 444555555667788888987

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.69  E-value=4.5e-16  Score=130.79  Aligned_cols=173  Identities=19%  Similarity=0.293  Sum_probs=133.6

Q ss_pred             EEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCC
Q 021648           92 RYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE  170 (309)
Q Consensus        92 ~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  170 (309)
                      -.+.||+++|..++|+| +.+.++|||.|.+|.+|.+-.+.....+.                                 
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------------------------------  121 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------------------------------  121 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc---------------------------------
Confidence            34679999999999999 45689999999999999874433221111                                 


Q ss_pred             cCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC
Q 021648          171 KGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD  249 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D  249 (309)
                         -.+..+.+|...|..+.+.|.. ..|++++.|.+|.+||..+|+.+.++.    |...|.+++|+-||.+++|.+.|
T Consensus       122 ---epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----hpd~i~S~sfn~dGs~l~TtckD  194 (472)
T KOG0303|consen  122 ---EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----HPDMVYSMSFNRDGSLLCTTCKD  194 (472)
T ss_pred             ---cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC----CCCeEEEEEeccCCceeeeeccc
Confidence               0123344565667778888865 677889999999999999999887654    56778999999999999999999


Q ss_pred             CcEEEEECCCCceEEEeecCCC-CCcEEEECCCeeEEEEccc---eEEEeeecCCCccc
Q 021648          250 GSVYAWSVRSGKEVASWMSFDT-EPPVIKWTPGSLMFVTGSS---ELSFWIPDLSKLGA  304 (309)
Q Consensus       250 g~i~vwd~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~s~~~---d~~~~~~~~~~~~~  304 (309)
                      ..|||||.++++.+.+-++|.+ ....+.|-.++..+.+|-+   +.++=+|+...|.+
T Consensus       195 KkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e  253 (472)
T KOG0303|consen  195 KKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE  253 (472)
T ss_pred             ceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccC
Confidence            9999999999999998888876 4566889999997777764   45554554444443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=2.4e-13  Score=111.71  Aligned_cols=239  Identities=15%  Similarity=0.221  Sum_probs=155.0

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCC-----CCceeEEEEccC
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG-----WDESLRLLSLHD   87 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g-----~d~~i~~~d~~~   87 (309)
                      ...+++|++|..=++.| .|.-.|||+.+--+....-..+..+...+..-.-.++++... +|     .-+.+-+||-..
T Consensus         7 ~~lsvs~NQD~ScFava-~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVG-Gg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVA-TDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVG-GGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             ceeEEEEccCCceEEEE-ecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEec-CCCCCCCCCceEEEEeccc
Confidence            34569999988766555 677789999863222111111111111111111112222221 11     136799999766


Q ss_pred             CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCC-CceeeeeeeecC--ceeEEECC--CCcEEEEE--ECCE
Q 021648           88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRVQG--RPAAAYDD--QGLVFAVA--FGGY  160 (309)
Q Consensus        88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~-~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~--~~~~  160 (309)
                      ..++..+. -..+|.+|.+.++  +++..- +..|.+|.+. +.+..+.+....  +-.+++.+  ...+++.-  .-|.
T Consensus        85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq  160 (346)
T KOG2111|consen   85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ  160 (346)
T ss_pred             CcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence            77777665 6678999999875  344443 7899999876 334443332221  11223322  22333322  2488


Q ss_pred             EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCc-EEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      |++-|+.....++  -..+..|.+++.+++.+-+|..+|+++..|+ |||||..+|+++.++.-.. ....+.+++|||+
T Consensus       161 vQi~dL~~~~~~~--p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~  237 (346)
T KOG2111|consen  161 VQIVDLASTKPNA--PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPN  237 (346)
T ss_pred             EEEEEhhhcCcCC--ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheEEEEEeCCC
Confidence            9999987654421  1233457789999999999999999999997 8999999999999987543 3456889999999


Q ss_pred             CCEEEEEcCCCcEEEEECCCC
Q 021648          240 GMFVISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~~~  260 (309)
                      +.+||.+|+-|+++|+.++..
T Consensus       238 ~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  238 SSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             ccEEEEEcCCCeEEEEEeecC
Confidence            999999999999999998753

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=8.2e-16  Score=130.22  Aligned_cols=189  Identities=19%  Similarity=0.192  Sum_probs=131.5

Q ss_pred             eEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeee
Q 021648           57 DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL  136 (309)
Q Consensus        57 ~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~  136 (309)
                      ..+||+.++..+.++.   .|+++|+|+..+.+.+.....|.++|.+++|+||++.|++-+.| ..++|+.+++.+...+
T Consensus       148 k~vaf~~~gs~latgg---~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGG---TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeecc---ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            4788888888887764   48999999987777778888999999999999999999999999 9999999888543322


Q ss_pred             eecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-----CEEEEEeCCCcEEEEE
Q 021648          137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-----RLMLLTTMEGHIHVLD  211 (309)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-----~~l~~~~~dg~v~i~d  211 (309)
                      .....        ..                                 ....+.|+.|+     +.++....-+.|+.+|
T Consensus       224 t~~~k--------~~---------------------------------~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~  262 (398)
T KOG0771|consen  224 TPFSK--------DE---------------------------------MFSSCRFSVDNAQETLRLAASQFPGGGVRLCD  262 (398)
T ss_pred             CCccc--------ch---------------------------------hhhhceecccCCCceEEEEEecCCCCceeEEE
Confidence            21100        00                                 01122333333     1112222233444444


Q ss_pred             CCC--C-eEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-ecCCCCCcEEEECCCeeEEEE
Q 021648          212 SFR--G-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVT  287 (309)
Q Consensus       212 ~~~--~-~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s  287 (309)
                      +..  + ..+.... .......+.+++.|+||+++|.|+.||.|-|++..+-+.+.-. ..|...|+.|.|+|+.+.+++
T Consensus       263 ~~~w~~~~~l~~~~-~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s  341 (398)
T KOG0771|consen  263 ISLWSGSNFLRLRK-KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS  341 (398)
T ss_pred             eeeeccccccchhh-hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence            321  1 1111100 0011246778999999999999999999999999887776543 579999999999999999988


Q ss_pred             ccce
Q 021648          288 GSSE  291 (309)
Q Consensus       288 ~~~d  291 (309)
                      .+++
T Consensus       342 vSs~  345 (398)
T KOG0771|consen  342 VSSD  345 (398)
T ss_pred             cccC
Confidence            8876

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.68  E-value=1.8e-14  Score=118.84  Aligned_cols=274  Identities=14%  Similarity=0.282  Sum_probs=180.9

Q ss_pred             EEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEee
Q 021648           16 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK   95 (309)
Q Consensus        16 ~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~   95 (309)
                      -.+|||+|+++|+++.- .+-|=|.++.+..+.+.-- ..+..+.+..+...++.+..  .|+.|.+|++...+....++
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl-dki~yieW~ads~~ilC~~y--k~~~vqvwsl~Qpew~ckId   88 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL-DKIVYIEWKADSCHILCVAY--KDPKVQVWSLVQPEWYCKID   88 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH-HHhhheeeeccceeeeeeee--ccceEEEEEeecceeEEEec
Confidence            35799999999999754 7778888876655544332 23555677777776666542  37899999999999888888


Q ss_pred             ecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeeec-CceeEEECCCCcEEEEEE----------------
Q 021648           96 GHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAF----------------  157 (309)
Q Consensus        96 ~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------------  157 (309)
                      .-.+.+.+++|+|||+ .|.+...|-.|-+|.+.+.++....... +....++.+++++.+...                
T Consensus        89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W  168 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW  168 (447)
T ss_pred             cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence            8889999999999997 5667788999999999887765432111 122345555655554332                


Q ss_pred             ---------------------CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe
Q 021648          158 ---------------------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  216 (309)
Q Consensus       158 ---------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~  216 (309)
                                           ++.+-+||.--    .+.++..+- ...+..+.+||.+++++.|+.|+++|+.+..+-+
T Consensus       169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~L----eykv~aYe~-~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk  243 (447)
T KOG4497|consen  169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL----EYKVYAYER-GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK  243 (447)
T ss_pred             HHHHhcCCCcccccCceECCCCcEEEEecchh----hheeeeeee-ccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence                                 12334443110    111111111 1356778999999999999999999986643322


Q ss_pred             EeEEe------------------------------------------------e----------e-----cCCCCCccce
Q 021648          217 LLSTY------------------------------------------------N----------V-----KPVSRNSTLE  233 (309)
Q Consensus       217 ~~~~~------------------------------------------------~----------~-----~~~~~~~~~~  233 (309)
                      ...+|                                                +          .     .+.....+-.
T Consensus       244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~  323 (447)
T KOG4497|consen  244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK  323 (447)
T ss_pred             ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence            21111                                                0          0     0001112345


Q ss_pred             EEECCCCCEEEEEcCC--CcEEEEECCCCceEEEeecCCCCCcEEEECCCee--EEEEccceEEEeeecC
Q 021648          234 ASFSPEGMFVISGSGD--GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTGSSELSFWIPDL  299 (309)
Q Consensus       234 ~~~sp~g~~l~s~s~D--g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~s~~~d~~~~~~~~  299 (309)
                      ++||+|..|++|-.+.  ..+-+||++..+..+.+. ...+|....|+|...  .+++|++-+++|.|..
T Consensus       324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg  392 (447)
T KOG4497|consen  324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG  392 (447)
T ss_pred             eeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence            8999999999998543  588999998866544432 345789999999864  4456667788887765

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=2.7e-16  Score=134.59  Aligned_cols=229  Identities=14%  Similarity=0.180  Sum_probs=179.1

Q ss_pred             EEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe
Q 021648           15 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF   94 (309)
Q Consensus        15 ~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~   94 (309)
                      ..+.++.+|+.|+-|+.-|.|-.+|..++.....+..-. .|..+.|-.+..+++++-    ..-+.+||- .|..+..+
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-tv~Dv~~LHneq~~AVAQ----K~y~yvYD~-~GtElHCl  206 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-TVRDVTFLHNEQFFAVAQ----KKYVYVYDN-NGTELHCL  206 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeeehhh-hhhhhhhhcchHHHHhhh----hceEEEecC-CCcEEeeh
Confidence            467889999999999999999999999988877766432 466777766666655543    456888884 45667777


Q ss_pred             eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCc
Q 021648           95 KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPF  174 (309)
Q Consensus        95 ~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  174 (309)
                      +.| .+|..+.|.|-.-.|++++.-|-+++-|+.+++.+..+....                                  
T Consensus       207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~----------------------------------  251 (545)
T KOG1272|consen  207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA----------------------------------  251 (545)
T ss_pred             hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC----------------------------------
Confidence            755 578999999988889999999999999998887655443211                                  


Q ss_pred             eEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEE
Q 021648          175 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYA  254 (309)
Q Consensus       175 ~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~v  254 (309)
                               ..+...+-+|-.-.+-.|..+|+|.+|...+.+.+..+.+   |.++|.++++.|+|+|+||.|.|..++|
T Consensus       252 ---------G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc---H~g~V~siAv~~~G~YMaTtG~Dr~~kI  319 (545)
T KOG1272|consen  252 ---------GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC---HRGPVSSIAVDRGGRYMATTGLDRKVKI  319 (545)
T ss_pred             ---------CccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh---cCCCcceEEECCCCcEEeecccccceeE
Confidence                     1122334556667788899999999999988877765543   5678899999999999999999999999


Q ss_pred             EECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648          255 WSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP  297 (309)
Q Consensus       255 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~  297 (309)
                      ||+++...+.+... +.....+++|..|.+.++-+.-+++|--
T Consensus       320 WDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d  361 (545)
T KOG1272|consen  320 WDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKD  361 (545)
T ss_pred             eeeccccccceeec-CCCccccccccccceeeecCCeeeeehh
Confidence            99998776666544 4456789999999888888888999943

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=5.7e-15  Score=130.11  Aligned_cols=251  Identities=13%  Similarity=0.178  Sum_probs=178.0

Q ss_pred             eeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEe
Q 021648           47 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLW  125 (309)
Q Consensus        47 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~W  125 (309)
                      ..+.+|...|.++...|.|..+++++.   |+++|+|.+.+|.+++... -.+.|.+|+|+|.++ .++.++.+..+.+-
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsd---DGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSD---DGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCC---CCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence            346789999999999999999998765   8999999999999998876 556899999999765 45555555556666


Q ss_pred             eCCCceeee--------------------------------------eeeec-CceeEEECCCCcEEEEEEC----CEEE
Q 021648          126 DQRAEKCQG--------------------------------------LLRVQ-GRPAAAYDDQGLVFAVAFG----GYIR  162 (309)
Q Consensus       126 d~~~~~~~~--------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~----~~i~  162 (309)
                      +..-+..+.                                      ++... ....+..+..|.++++...    ..|.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            543220000                                      00000 0112334455666665532    5688


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  242 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  242 (309)
                      |.++.+...+ .   .+.-....+..+.|.|...+++.++ ...|+|||+.+.+++..+..   ....+..++.+|.|..
T Consensus       550 iHQLSK~~sQ-~---PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~t---g~kwiS~msihp~GDn  621 (733)
T KOG0650|consen  550 IHQLSKRKSQ-S---PFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLT---GSKWISSMSIHPNGDN  621 (733)
T ss_pred             EEeccccccc-C---chhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhc---CCeeeeeeeecCCCCe
Confidence            8887653221 1   1111234578899999998887764 56789999988776655432   2345667899999999


Q ss_pred             EEEEcCCCcEEEEECCCC-ceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEe----------eecCCCccccccCC
Q 021648          243 VISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW----------IPDLSKLGAYVGRK  309 (309)
Q Consensus       243 l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~----------~~~~~~~~~~~~~~  309 (309)
                      |+.|+.|+.+..+|+.-. ++.+++..|...+..|+||+.-.+|++|+.|  +.++          .|.+-.|+.+.||+
T Consensus       622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~  701 (733)
T KOG0650|consen  622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE  701 (733)
T ss_pred             EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence            999999999999999754 5677888999999999999999999999987  3322          23456778888874

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.66  E-value=2.2e-15  Score=133.57  Aligned_cols=225  Identities=17%  Similarity=0.300  Sum_probs=151.7

Q ss_pred             CcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCC-------CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648           11 NGRISSMDFHK-SSSYLVTASDDESIRLYDVTA-------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus        11 ~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ...|+.+.|+| |..+||.++.|+.|+||-+..       .+....+..|...+..+-|+|-...++..+  .+|.+|++
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a--syd~Ti~l  704 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVA--SYDSTIEL  704 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhh--hccceeee
Confidence            34689999999 778999999999999998863       233455777877899999998665555443  35999999


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEE
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR  162 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (309)
                      ||+.+++....+.||++.|.+++|+|+|+.++|.+.||++++++.+++..- ....++          .+          
T Consensus       705 WDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p-v~Eg~g----------pv----------  763 (1012)
T KOG1445|consen  705 WDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP-VYEGKG----------PV----------  763 (1012)
T ss_pred             eehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc-cccCCC----------Cc----------
Confidence            999999988999999999999999999999999999999999998765311 000000          00          


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC----cEEEEECCCCe--EeEEeeecCCCCCccceEEE
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG----HIHVLDSFRGT--LLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg----~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~  236 (309)
                                        +  .....+.+.-||+++++.+.|+    .|.+||..+-.  .+.+......  ..+.-=.|
T Consensus       764 ------------------g--tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva--ps~LvP~Y  821 (1012)
T KOG1445|consen  764 ------------------G--TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA--PSPLVPHY  821 (1012)
T ss_pred             ------------------c--CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc--Cccccccc
Confidence                              0  0112344555788877776654    68888865422  2222221110  01111134


Q ss_pred             CCC-CCEEEEEcCCCcEEEEECCCCce-EEEeecCCCCCcE--EEECC
Q 021648          237 SPE-GMFVISGSGDGSVYAWSVRSGKE-VASWMSFDTEPPV--IKWTP  280 (309)
Q Consensus       237 sp~-g~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~v~~--l~~~p  280 (309)
                      .+| +-.++||-.|..|+.|.+-...+ +-.+..|.+++..  |+|.+
T Consensus       822 D~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~  869 (1012)
T KOG1445|consen  822 DYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQ  869 (1012)
T ss_pred             cCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeec
Confidence            555 46778888899999999865433 3334444443322  55544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=9.8e-14  Score=125.68  Aligned_cols=223  Identities=15%  Similarity=0.157  Sum_probs=146.0

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCC---CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D---~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +++..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.... ..........+|+|+++.++++...  ++...
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~la~~~~~--~g~~~  265 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRTLAVALSR--DGNSQ  265 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEcc--CCCce
Confidence            4556778889999999999999887754   3599999998875432 2222334578999999988765432  44444


Q ss_pred             EE--EccCCceEEEeeecccCEEEEEecCCCCeEEEecC-CCcEEEeeCC--CceeeeeeeecCceeEEECCCCcEEEEE
Q 021648           82 LL--SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQR--AEKCQGLLRVQGRPAAAYDDQGLVFAVA  156 (309)
Q Consensus        82 ~~--d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~v~~Wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (309)
                      +|  |+.+++ ...+..|........|+|||+.|+..+. ++...+|.+.  ++...                       
T Consensus       266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-----------------------  321 (427)
T PRK02889        266 IYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-----------------------  321 (427)
T ss_pred             EEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-----------------------
Confidence            54  555544 4555556666677899999998776553 4566666532  11100                       


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC---cEEEEECCCCeEeEEeeecCCCCCccce
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLE  233 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~  233 (309)
                           ++              ...+  .......+||||++++..+.++   .|.+||+.+++... +. .   ......
T Consensus       322 -----~l--------------t~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt-~---~~~~~~  375 (427)
T PRK02889        322 -----RV--------------TFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT-D---TTRDES  375 (427)
T ss_pred             -----EE--------------ecCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc-C---CCCccC
Confidence                 00              0000  0112357999999998877654   69999988776442 21 1   112245


Q ss_pred             EEECCCCCEEEEEcCCC---cEEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648          234 ASFSPEGMFVISGSGDG---SVYAWSVRSGKEVASWMSFDTEPPVIKWTPG  281 (309)
Q Consensus       234 ~~~sp~g~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~  281 (309)
                      ..|+|||++|+.++.++   .+++.++ +++....+..+.+.+...+|+|-
T Consensus       376 p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        376 PSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             ceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            79999999999887665   4666666 45555556667778888899884

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.4e-13  Score=125.10  Aligned_cols=225  Identities=12%  Similarity=0.067  Sum_probs=147.4

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeC---CCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~---D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      .+++..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+...+...+|+|+++.++++...+....|
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  272 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI  272 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence            3566778889999999999999988774   468999999887653 333344456678899999988765433224568


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecC-CC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEE
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF  157 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (309)
                      .++|+++++. ..+..+........|+||++.++..+. ++  .|.+||+..+.....                      
T Consensus       273 y~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l----------------------  329 (435)
T PRK05137        273 YTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI----------------------  329 (435)
T ss_pred             EEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe----------------------
Confidence            8889988764 446666666778899999998876653 33  345555433221100                      


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC---CcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                                          ..  .........+||||+.++....+   ..|.+||+..+.. ..+..    ...+...
T Consensus       330 --------------------t~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~----~~~~~~p  382 (435)
T PRK05137        330 --------------------SF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS----GFLVEGP  382 (435)
T ss_pred             --------------------ec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC----CCCCCCC
Confidence                                00  00112345799999999876643   3688888755443 22211    1234567


Q ss_pred             EECCCCCEEEEEcCC------CcEEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648          235 SFSPEGMFVISGSGD------GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG  281 (309)
Q Consensus       235 ~~sp~g~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~  281 (309)
                      .|+|||++|+..+.+      ..++++|+..++. ..+. .++.+...+|+|-
T Consensus       383 ~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        383 TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSPL  433 (435)
T ss_pred             eECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence            999999998776543      2588888865543 3443 3445677788873

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.65  E-value=1.2e-14  Score=117.84  Aligned_cols=206  Identities=20%  Similarity=0.271  Sum_probs=135.0

Q ss_pred             ceEec-CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee-eeee-----ccccceeEEEEec--CCCEEEEEcCC
Q 021648            4 GMSFR-DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-KTIN-----SKKYGVDLVCFTS--HPTTVIYSSKN   74 (309)
Q Consensus         4 ~~~~~-~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~-~~~~-----~~~~~v~~~~~~~--~~~~~~~~s~~   74 (309)
                      +..|. .|-+.|.||.|.|++..+++-. |..|.+|+.+.+..+ ..+.     .+....+.-.|+|  +++.+++.+  
T Consensus       115 v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~--  191 (370)
T KOG1007|consen  115 VASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS--  191 (370)
T ss_pred             hhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC--
Confidence            33444 5667999999999999998875 999999999876653 3222     1233456667888  445666554  


Q ss_pred             CCCceeEEEEccCCceEEEe-eecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcE
Q 021648           75 GWDESLRLLSLHDNKYLRYF-KGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV  152 (309)
Q Consensus        75 g~d~~i~~~d~~~~~~~~~~-~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (309)
                        |.+++.||+.+.++...+ ..|-..|+.++|+|+.. +|+||+.||.||+||.|..+..                   
T Consensus       192 --d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p-------------------  250 (370)
T KOG1007|consen  192 --DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP-------------------  250 (370)
T ss_pred             --CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc-------------------
Confidence              789999999876554443 56778999999999865 7899999999999998754311                   


Q ss_pred             EEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCC----------------
Q 021648          153 FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRG----------------  215 (309)
Q Consensus       153 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~----------------  215 (309)
                                             ++.+.+|.-.+.+|.|+|.. +++++++.|..|.+|.+.+-                
T Consensus       251 -----------------------v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e  307 (370)
T KOG1007|consen  251 -----------------------VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESE  307 (370)
T ss_pred             -----------------------ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCc
Confidence                                   11122222333444444432 33444445555554443210                


Q ss_pred             -------------eEeEEeeecCCCCCccceEEECC-CCCEEEEEcCCCcEEEEECCC
Q 021648          216 -------------TLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       216 -------------~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                                   .++.++   ..|...|.+++||. |-=.+|+-|.||.+.|=.+..
T Consensus       308 ~~dseer~kpL~dg~l~ty---dehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  308 DEDSEERVKPLQDGQLETY---DEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             chhhHHhcccccccccccc---cccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence                         111222   24567889999987 455667789999999877654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=2.1e-13  Score=114.02  Aligned_cols=225  Identities=14%  Similarity=0.228  Sum_probs=139.4

Q ss_pred             eEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeeccc--CEEEEEecCCCCeEEEecCCC--cEEEeeCCCcee
Q 021648           57 DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD--RVVSLSLCSSKDCFISGSLDR--TVLLWDQRAEKC  132 (309)
Q Consensus        57 ~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~s~Dg--~v~~Wd~~~~~~  132 (309)
                      ...+|..+...+..++.+|    -++|..+..+.  .+..-.+  .|...-|+.  ..+|-.+.+.  .+++.+++....
T Consensus         9 ~~~~~Nqd~~~lsvGs~~G----yk~~~~~~~~k--~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~   80 (391)
T KOG2110|consen    9 NFIGFNQDSTLLSVGSKDG----YKIFSCSPFEK--CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT   80 (391)
T ss_pred             eeeeeccceeEEEccCCCc----eeEEecCchHH--hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce
Confidence            3344554544455555433    46666544322  1111122  344444543  4555555443  478888776554


Q ss_pred             eeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCC---CCCCCeEEEEccCCCEEEEEe--CCCcE
Q 021648          133 QGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG---DISDANVVKFSNDGRLMLLTT--MEGHI  207 (309)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~v~~s~dg~~l~~~~--~dg~v  207 (309)
                      +..+..+... ....-....+.+.....|++||+++++.    +.++..   +...+.++++++++.+++.-+  ..|.|
T Consensus        81 ICe~~fpt~I-L~VrmNr~RLvV~Lee~IyIydI~~Mkl----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV  155 (391)
T KOG2110|consen   81 ICEIFFPTSI-LAVRMNRKRLVVCLEESIYIYDIKDMKL----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV  155 (391)
T ss_pred             EEEEecCCce-EEEEEccceEEEEEcccEEEEeccccee----ehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence            4444333221 1111122333344555699999987642    122211   222334444455556888754  46999


Q ss_pred             EEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCc-EEEEECCCCceEEEeecC--CCCCcEEEECCCeeE
Q 021648          208 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS-VYAWSVRSGKEVASWMSF--DTEPPVIKWTPGSLM  284 (309)
Q Consensus       208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~-i~vwd~~~~~~~~~~~~~--~~~v~~l~~~p~~~~  284 (309)
                      ++||..+-.....++   .|.+++.+++|+|+|.+|||||+-|+ |||+.+.+|+++.+|..=  ...|.+|+|+|++++
T Consensus       156 ~l~d~~nl~~v~~I~---aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~  232 (391)
T KOG2110|consen  156 VLFDTINLQPVNTIN---AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF  232 (391)
T ss_pred             EEEEcccceeeeEEE---ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence            999998887777776   46788889999999999999999995 699999999999998642  346788999999999


Q ss_pred             EEEccce--EEEeee
Q 021648          285 FVTGSSE--LSFWIP  297 (309)
Q Consensus       285 l~s~~~d--~~~~~~  297 (309)
                      |+..++.  ++++-.
T Consensus       233 L~~sS~TeTVHiFKL  247 (391)
T KOG2110|consen  233 LAASSNTETVHIFKL  247 (391)
T ss_pred             EEEecCCCeEEEEEe
Confidence            9888775  555433

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.63  E-value=6.4e-15  Score=128.33  Aligned_cols=165  Identities=19%  Similarity=0.341  Sum_probs=113.0

Q ss_pred             ccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceE
Q 021648           98 HDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI  176 (309)
Q Consensus        98 ~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  176 (309)
                      +..|+++.|-|. ...|+.+-.+|.+.++|.+-.      .....+...+..++..++.      ..|.-.. ...+...
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------~~~t~p~~~~~k~~~~f~i------~t~ksk~-~rNPv~~  285 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------CGATAPSYQALKDGDQFAI------LTSKSKK-TRNPVAR  285 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeecccc------ccCCCCcccccCCCCeeEE------eeeeccc-cCCccce
Confidence            468999999984 346677778999999985211      0001111111222222221      1111111 1112222


Q ss_pred             EEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEE
Q 021648          177 FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS  256 (309)
Q Consensus       177 ~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd  256 (309)
                      +..  ....++.++|||||++||+-+.||.+||||-.+.+++....-   .-+...+|+|||||+||++|++|.-|.||.
T Consensus       286 w~~--~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS---YFGGLLCvcWSPDGKyIvtGGEDDLVtVwS  360 (636)
T KOG2394|consen  286 WHI--GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS---YFGGLLCVCWSPDGKYIVTGGEDDLVTVWS  360 (636)
T ss_pred             eEe--ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh---hccceEEEEEcCCccEEEecCCcceEEEEE
Confidence            222  223688999999999999999999999999887776654321   124567899999999999999999999999


Q ss_pred             CCCCceEEEeecCCCCCcEEEECC
Q 021648          257 VRSGKEVASWMSFDTEPPVIKWTP  280 (309)
Q Consensus       257 ~~~~~~~~~~~~~~~~v~~l~~~p  280 (309)
                      +...+.++--.+|.+-|+.|+|.|
T Consensus       361 f~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  361 FEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccceEEEeccccccceeeEeecc
Confidence            999998888889999999999983

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=2.1e-13  Score=123.79  Aligned_cols=215  Identities=13%  Similarity=0.118  Sum_probs=139.9

Q ss_pred             CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCe
Q 021648           33 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC  112 (309)
Q Consensus        33 ~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~  112 (309)
                      .+|.+||.+ +...+.+..+...+...+|+|+++.+++.+..+.+..+.+||+.+++.. .+..+.+...+..|+|||+.
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCE
Confidence            468899985 4455556556667888899999999998775444678999999887653 33444555567899999986


Q ss_pred             EE-EecCCC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEE
Q 021648          113 FI-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV  189 (309)
Q Consensus       113 l~-s~s~Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v  189 (309)
                      ++ +.+.++  .|.+||+.+++....                                            ..+.......
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~~l--------------------------------------------t~~~~~~~~~  297 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLTRL--------------------------------------------TNHFGIDTEP  297 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeEEC--------------------------------------------ccCCCCccce
Confidence            64 555555  477777655432110                                            0001112346


Q ss_pred             EEccCCCEEEEEeC-CC--cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC---cEEEEECCCCceE
Q 021648          190 KFSNDGRLMLLTTM-EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEV  263 (309)
Q Consensus       190 ~~s~dg~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg---~i~vwd~~~~~~~  263 (309)
                      +|+|||+.++..+. +|  .|+++|+.+++... +..   ........+|||||++|+..+.++   .|.+||+.+++..
T Consensus       298 ~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~---~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        298 TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF---QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             EECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec---CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence            89999998887764 34  46677776655332 221   112234579999999998775443   6999999887644


Q ss_pred             EEeecCCCCCcEEEECCCeeEEEEccce---EEEeeecC
Q 021648          264 ASWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFWIPDL  299 (309)
Q Consensus       264 ~~~~~~~~~v~~l~~~p~~~~l~s~~~d---~~~~~~~~  299 (309)
                       .+. +........|+||+++++..+.+   -.+|..++
T Consensus       374 -~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        374 -TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             -ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence             332 33344567999999987765542   45555544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.63  E-value=2.9e-12  Score=113.18  Aligned_cols=269  Identities=16%  Similarity=0.207  Sum_probs=163.2

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +++..+....+....+.|+|||+++..++.|+.|.++|+.+++.++++..... ...+++++++++++++.  ..++++.
T Consensus        27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n--~~~~~v~  103 (369)
T PF02239_consen   27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVAN--YEPGTVS  103 (369)
T ss_dssp             SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEE--EETTEEE
T ss_pred             eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEe--cCCCcee
Confidence            45667765545555688999999999999999999999999999999887654 46789999999988774  3478999


Q ss_pred             EEEccCCceEEEeeec-------ccCEEEEEecCCCCeEEEecCC-CcEEEeeCCCceeee--eeeecCc-eeEEECCCC
Q 021648           82 LLSLHDNKYLRYFKGH-------HDRVVSLSLCSSKDCFISGSLD-RTVLLWDQRAEKCQG--LLRVQGR-PAAAYDDQG  150 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~s~D-g~v~~Wd~~~~~~~~--~~~~~~~-~~~~~~~~~  150 (309)
                      ++|.++.+.++.+...       ..++.++..++....++..-.| +.|-+-|....+...  .+..... .-..+++++
T Consensus       104 v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdg  183 (369)
T PF02239_consen  104 VIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDG  183 (369)
T ss_dssp             EEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTS
T ss_pred             EeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccc
Confidence            9999999988876532       3467788878887766666665 666666766544332  2222111 124566666


Q ss_pred             cEEEEEE--CCEEEEEECCCCCc---------C---C--------c-------------------------------eEE
Q 021648          151 LVFAVAF--GGYIRMFDARKYEK---------G---P--------F-------------------------------DIF  177 (309)
Q Consensus       151 ~~~~~~~--~~~i~~~d~~~~~~---------~---~--------~-------------------------------~~~  177 (309)
                      +++.++.  .+.|-++|....+.         +   +        +                               .+.
T Consensus       184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~  263 (369)
T PF02239_consen  184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK  263 (369)
T ss_dssp             SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred             ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence            6554442  35666666543210         0   0        0                               000


Q ss_pred             EeCCCCCCCeEEEEccCCCEEEEE----eCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC--c
Q 021648          178 SVGGDISDANVVKFSNDGRLMLLT----TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--S  251 (309)
Q Consensus       178 ~~~~~~~~~~~v~~s~dg~~l~~~----~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg--~  251 (309)
                      .+... ....-+..+|+++++...    ..++.|.++|..+.+...++...+  ...+..+.|++||+++.....|+  .
T Consensus       264 ~I~~~-G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~--~~~~~h~ef~~dG~~v~vS~~~~~~~  340 (369)
T PF02239_consen  264 TIPTQ-GGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP--GKRVVHMEFNPDGKEVWVSVWDGNGA  340 (369)
T ss_dssp             EEE-S-SSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH--T--EEEEEE-TTSSEEEEEEE--TTE
T ss_pred             EEECC-CCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC--CCcEeccEECCCCCEEEEEEecCCCE
Confidence            00001 111345679999999888    345899999999887776654221  22366789999999876664443  6


Q ss_pred             EEEEECCCCceEEEeecCCCCCcEEEECCCeeEE
Q 021648          252 VYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF  285 (309)
Q Consensus       252 i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l  285 (309)
                      |.|||..+.+.++.++         .-+|.|+++
T Consensus       341 i~v~D~~Tl~~~~~i~---------~~tP~G~f~  365 (369)
T PF02239_consen  341 IVVYDAKTLKEKKRIP---------VPTPTGKFN  365 (369)
T ss_dssp             EEEEETTTTEEEEEEE-----------SEEEEEE
T ss_pred             EEEEECCCcEEEEEEE---------eeCCCeEec
Confidence            9999999999988876         235766654

...

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.63  E-value=7.2e-14  Score=113.42  Aligned_cols=230  Identities=13%  Similarity=0.152  Sum_probs=151.7

Q ss_pred             CCCcceEEEEeCCCC-----CEEEEeeCCCcEEEEEcCC--Cc--eeeeeecc-----ccceeEEEEec-CCCEEEEEcC
Q 021648            9 DYNGRISSMDFHKSS-----SYLVTASDDESIRLYDVTA--AT--CLKTINSK-----KYGVDLVCFTS-HPTTVIYSSK   73 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~-----~~l~t~s~D~~v~iWd~~~--~~--~~~~~~~~-----~~~v~~~~~~~-~~~~~~~~s~   73 (309)
                      .|.=+++.+-|.|+.     ++|||.|  -.+|+|.+..  .+  +...+..+     ..+.+...|.. +++++.++| 
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS-  170 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS-  170 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec-
Confidence            477789999999976     3566654  4899998863  11  11222222     23444444444 455565554 


Q ss_pred             CCCCceeEEEEccCCce--E-EEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeeec----Ccee--
Q 021648           74 NGWDESLRLLSLHDNKY--L-RYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPA--  143 (309)
Q Consensus        74 ~g~d~~i~~~d~~~~~~--~-~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~----~~~~--  143 (309)
                        .|-+..+||++++..  + -.+-.|..+|..++|..++. .|+|.|.||++|++|+|.-.-. ++-..    ..+.  
T Consensus       171 --iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS-TIIYE~p~~~~pLlR  247 (364)
T KOG0290|consen  171 --IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS-TIIYEDPSPSTPLLR  247 (364)
T ss_pred             --ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-eEEecCCCCCCccee
Confidence              489999999998743  3 34668999999999998654 7999999999999999754321 11111    0111  


Q ss_pred             EEECC-CCcEEEE-EE-CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeE--
Q 021648          144 AAYDD-QGLVFAV-AF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTL--  217 (309)
Q Consensus       144 ~~~~~-~~~~~~~-~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~--  217 (309)
                      ....+ +..++++ +. ...|.+.|+|..   ...+..+.+|...|+.+++.|.. ..+++++.|-.+.+||+.....  
T Consensus       248 LswnkqDpnymATf~~dS~~V~iLDiR~P---~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~  324 (364)
T KOG0290|consen  248 LSWNKQDPNYMATFAMDSNKVVILDIRVP---CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN  324 (364)
T ss_pred             eccCcCCchHHhhhhcCCceEEEEEecCC---CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC
Confidence            11111 2233333 23 368999999863   34566788899999999999964 6788999999999999865322  


Q ss_pred             -eEEeeecCCCCCccceEEECC-CCCEEEEEcC
Q 021648          218 -LSTYNVKPVSRNSTLEASFSP-EGMFVISGSG  248 (309)
Q Consensus       218 -~~~~~~~~~~~~~~~~~~~sp-~g~~l~s~s~  248 (309)
                       ...... ......|..+.|+| .+.+++.+..
T Consensus       325 ~~dPila-y~a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  325 GEDPILA-YTAGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             CCCchhh-hhccceeeeeeecccCCCEEEEEec
Confidence             111111 12346778899996 5778887764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=5.3e-13  Score=121.36  Aligned_cols=216  Identities=12%  Similarity=0.114  Sum_probs=142.4

Q ss_pred             CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCe
Q 021648           33 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC  112 (309)
Q Consensus        33 ~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~  112 (309)
                      ..|.+||.+ |...+.+..+...+...+|+|+++.+++.+..+-+..|.+||+.+++. ..+..+.+.+....|+|||+.
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCE
Confidence            467788875 445555666666788999999999988876544468999999988764 345567777888999999987


Q ss_pred             EE-EecCCCc--EEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEE
Q 021648          113 FI-SGSLDRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV  189 (309)
Q Consensus       113 l~-s~s~Dg~--v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v  189 (309)
                      |+ +.+.++.  |.+||++++.....                                            ..+.......
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~~L--------------------------------------------t~~~~~~~~~  295 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTTRL--------------------------------------------TDSPAIDTSP  295 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceEEc--------------------------------------------cCCCCccCce
Confidence            65 5666665  55556654432110                                            0001112346


Q ss_pred             EEccCCCEEEEEeC-C--CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC---cEEEEECCCCceE
Q 021648          190 KFSNDGRLMLLTTM-E--GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEV  263 (309)
Q Consensus       190 ~~s~dg~~l~~~~~-d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg---~i~vwd~~~~~~~  263 (309)
                      .+||||+.++..+. +  ..|+++|+..++... +..   .........|+|||++|+..+.++   .|.+||+.++. .
T Consensus       296 ~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~---~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~  370 (435)
T PRK05137        296 SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISF---GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-E  370 (435)
T ss_pred             eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eec---CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-e
Confidence            89999998887664 3  368888877655432 221   122344578999999998876543   68889986543 2


Q ss_pred             EEeecCCCCCcEEEECCCeeEEEEccce------EEEeeecCC
Q 021648          264 ASWMSFDTEPPVIKWTPGSLMFVTGSSE------LSFWIPDLS  300 (309)
Q Consensus       264 ~~~~~~~~~v~~l~~~p~~~~l~s~~~d------~~~~~~~~~  300 (309)
                      ..+. ....+..+.|+|||+.++..+.+      ..+|..++.
T Consensus       371 ~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~  412 (435)
T PRK05137        371 RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT  412 (435)
T ss_pred             Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence            3332 23356778999999887664432      367766653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=6.9e-13  Score=120.14  Aligned_cols=207  Identities=11%  Similarity=0.106  Sum_probs=132.3

Q ss_pred             CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCe
Q 021648           33 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC  112 (309)
Q Consensus        33 ~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~  112 (309)
                      ..|.+||.+.... +.+..+...+...+|+|+++.+++.+..+.+..+.+||+.+++... +....+.+..+.|+|||+.
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence            3688888875443 4444455568889999999999877643335789999998876432 2223334456899999997


Q ss_pred             EEEe-cCCC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEE
Q 021648          113 FISG-SLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV  189 (309)
Q Consensus       113 l~s~-s~Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v  189 (309)
                      |+-. +.+|  .|.+||+++++.....                                            .....+...
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt--------------------------------------------~~~~~~~~~  292 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVT--------------------------------------------DGRSNNTEP  292 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEcc--------------------------------------------CCCCCcCce
Confidence            7744 4444  4667776554321100                                            001123456


Q ss_pred             EEccCCCEEEEEeCC-C--cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC---CcEEEEECCCCceE
Q 021648          190 KFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSGKEV  263 (309)
Q Consensus       190 ~~s~dg~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D---g~i~vwd~~~~~~~  263 (309)
                      .|+|||+.|+..+.+ +  .|+++|+.++... .+..   .........|+|||++|+..+.+   ..|++||+.+++. 
T Consensus       293 ~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~---~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-  367 (429)
T PRK03629        293 TWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW---EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-  367 (429)
T ss_pred             EECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec---CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-
Confidence            899999988877654 3  4555577665443 2221   11233457899999999887654   3588999988753 


Q ss_pred             EEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          264 ASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       264 ~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      ..+.. ........|+|||++++.++.+
T Consensus       368 ~~Lt~-~~~~~~p~~SpDG~~i~~~s~~  394 (429)
T PRK03629        368 QVLTD-TFLDETPSIAPNGTMVIYSSSQ  394 (429)
T ss_pred             EEeCC-CCCCCCceECCCCCEEEEEEcC
Confidence            33332 1223467899999988887765

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.63  E-value=9.4e-14  Score=114.11  Aligned_cols=240  Identities=14%  Similarity=0.136  Sum_probs=175.9

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc---eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      .+|.--..+|+|-+|++|+..+|.+-....|-||......   ..+++..|...|+.++++|..+.++.++.   |..-.
T Consensus         4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~---drnay   80 (361)
T KOG1523|consen    4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH---DRNAY   80 (361)
T ss_pred             EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC---CCCcc
Confidence            3455556899999999999999999999999999876543   57889999999999999999999999875   88999


Q ss_pred             EEEc-cCCc--eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEEC
Q 021648           82 LLSL-HDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  158 (309)
Q Consensus        82 ~~d~-~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (309)
                      ||.. ..++  +.-.+..|...+++|.|+|..+.|+.||.-+.|.+|-++.++--.                        
T Consensus        81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW------------------------  136 (361)
T KOG1523|consen   81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW------------------------  136 (361)
T ss_pred             ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee------------------------
Confidence            9998 4454  455677899999999999999999999999999998765442110                        


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC------------------eEeEE
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------------------TLLST  220 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~------------------~~~~~  220 (309)
                             +.+.-+.        ...+.|.++.+.|++-++++|+.|++.|+|...-.                  +++.+
T Consensus       137 -------VsKhikk--------PirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E  201 (361)
T KOG1523|consen  137 -------VSKHIKK--------PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE  201 (361)
T ss_pred             -------hhhhhCC--------ccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence                   0000000        12356788999999999999999999999864211                  11111


Q ss_pred             eeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc-eEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648          221 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       221 ~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      +.   ...+.+..+.|+|+|..|+=.+.|+++.+=|..... .+.+...-.-+..++.|-.. ..++.++.
T Consensus       202 ~~---~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise-~~vv~ag~  268 (361)
T KOG1523|consen  202 AS---SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE-NSVVAAGY  268 (361)
T ss_pred             hc---cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC-CceeecCC
Confidence            11   234567789999999999999999999999987654 33333222234555555333 33334433

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=7.1e-14  Score=130.42  Aligned_cols=244  Identities=16%  Similarity=0.236  Sum_probs=159.3

Q ss_pred             eeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecc---cCEEEEEecC--CCCeEEEecCCCcEEEeeCCCc
Q 021648           56 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH---DRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAE  130 (309)
Q Consensus        56 v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~---~~v~~v~~~~--~~~~l~s~s~Dg~v~~Wd~~~~  130 (309)
                      ...+-|+|-...++++..   ...|++||.+.++.+..|..+.   ..|..+.+-.  |...+++|+.||.||+|+--..
T Consensus      1067 pk~~~~hpf~p~i~~ad~---r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADD---RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CceeeecCCCceeEEcCC---cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            344566666666665532   4689999999999887777654   4688888754  4458999999999999973222


Q ss_pred             --eeeeeeee----------cCceeEE--E-CCCCcEEEEEECCEEEEEECCCCCcCCceEEEe-CCCCCCCeEEEEc-c
Q 021648          131 --KCQGLLRV----------QGRPAAA--Y-DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV-GGDISDANVVKFS-N  193 (309)
Q Consensus       131 --~~~~~~~~----------~~~~~~~--~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~v~~s-~  193 (309)
                        +..+....          .....+.  . +..|.++++|.-..|++||..+...    +..+ .+....++++.-+ .
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~----~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV----VADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee----EeecccCCCccceeeccccc
Confidence              11111110          0011122  2 2456666666668899999875321    1111 1122334444332 3


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCc--cceEEECCCC-CEEEEEcCCCcEEEEECCCCceEE--Eeec
Q 021648          194 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS--TLEASFSPEG-MFVISGSGDGSVYAWSVRSGKEVA--SWMS  268 (309)
Q Consensus       194 dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~sp~g-~~l~s~s~Dg~i~vwd~~~~~~~~--~~~~  268 (309)
                      .|..+++|..||.|++||.+.............|...  |..+.+.+.| ..|++|+.||.|++||++......  +...
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred             CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence            4699999999999999998765432211222223333  8889998877 469999999999999998742221  2223


Q ss_pred             C---CCCCcEEEECCCeeEEEEccc-eEEEeeecCCCccccc
Q 021648          269 F---DTEPPVIKWTPGSLMFVTGSS-ELSFWIPDLSKLGAYV  306 (309)
Q Consensus       269 ~---~~~v~~l~~~p~~~~l~s~~~-d~~~~~~~~~~~~~~~  306 (309)
                      |   .+..+++..|+....+++|+. .+.+|..+...++.++
T Consensus      1300 ~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred             ccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccc
Confidence            3   335899999999999999994 5899998888877654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=8.6e-14  Score=110.40  Aligned_cols=212  Identities=17%  Similarity=0.256  Sum_probs=141.7

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR   92 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~   92 (309)
                      .|.+-+++|.+++|+.|..+|+|.+..+.+..                         +++.          ..+....+.
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~-------------------------s~sa----------~~~gk~~iv   56 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLD-------------------------SGSA----------EPPGKLKIV   56 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhh-------------------------cccc----------CCCCCccee
Confidence            45566789999999999999999988775311                         0000          000112344


Q ss_pred             EeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcC
Q 021648           93 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG  172 (309)
Q Consensus        93 ~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  172 (309)
                      .+++|.++|..+.|.  ..+|++|+ ||.|+-|.-+.....                        .++-++|.+..    
T Consensus        57 ~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es------------------------~~~K~lwe~~~----  105 (325)
T KOG0649|consen   57 PEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEES------------------------LATKRLWEVKI----  105 (325)
T ss_pred             eccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhh------------------------ccchhhhhhcC----
Confidence            457899999999998  35788887 699999975432110                        01123343321    


Q ss_pred             CceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcE
Q 021648          173 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV  252 (309)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i  252 (309)
                      +++.  -......+++.-..|...-++.++.|+.++-||+++|+...++..   |...+.++.--.....++||++||++
T Consensus       106 P~~~--~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG---HtDYvH~vv~R~~~~qilsG~EDGtv  180 (325)
T KOG0649|consen  106 PMQV--DAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG---HTDYVHSVVGRNANGQILSGAEDGTV  180 (325)
T ss_pred             cccc--CcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC---CcceeeeeeecccCcceeecCCCccE
Confidence            1111  112335688888998877777888999999999999999988874   55667677664555688999999999


Q ss_pred             EEEECCCCceEEEeecCC----------CCCcEEEECCCeeEEEEcc-ceEEEeee
Q 021648          253 YAWSVRSGKEVASWMSFD----------TEPPVIKWTPGSLMFVTGS-SELSFWIP  297 (309)
Q Consensus       253 ~vwd~~~~~~~~~~~~~~----------~~v~~l~~~p~~~~l~s~~-~d~~~~~~  297 (309)
                      ||||.++++.+..+....          .-|.+++  -+...+++|+ .-+.+|..
T Consensus       181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhL  234 (325)
T KOG0649|consen  181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHL  234 (325)
T ss_pred             EEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEec
Confidence            999999999887764322          1223333  3455666655 45888843

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.60  E-value=3.5e-13  Score=127.55  Aligned_cols=264  Identities=12%  Similarity=0.133  Sum_probs=157.3

Q ss_pred             ccceEecCCCcceEEEEeCCCC-CEEEEeeCCCcEEEEEcCC-------CceeeeeeccccceeEEEEecCCCEEEEEcC
Q 021648            2 EVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTA-------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSK   73 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~   73 (309)
                      .++.++..|+..|..++.+++. .+++|||.||+||+||...       .++..++......+..+.+-+.++++++++.
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence            4677889999999999887655 9999999999999999853       2344556555667888888888999988864


Q ss_pred             CCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCC-CceeeeeeeecCceeEEECCCCcE
Q 021648           74 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRVQGRPAAAYDDQGLV  152 (309)
Q Consensus        74 ~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~-~~~~~~~~~~~~~~~~~~~~~~~~  152 (309)
                         ||.|++.++.-.+.                   .++.+++.     ++=|.+ .+.   .+.+......  .....+
T Consensus      1119 ---DG~v~~~~id~~~~-------------------~~~~~~~~-----ri~n~~~~g~---vv~m~a~~~~--~~S~~l 1166 (1431)
T KOG1240|consen 1119 ---DGSVRVLRIDHYNV-------------------SKRVATQV-----RIPNLKKDGV---VVSMHAFTAI--VQSHVL 1166 (1431)
T ss_pred             ---CCeEEEEEcccccc-------------------ccceeeee-----ecccccCCCc---eEEeeccccc--ccceeE
Confidence               88999998754210                   00111111     000000 000   0011110000  001133


Q ss_pred             EEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccc
Q 021648          153 FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  232 (309)
Q Consensus       153 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  232 (309)
                      +.+..-+.|..||+|....-  -.........-+++++.+|.+.+++.|+..|.+.+||++=+.++......  +..++.
T Consensus      1167 vy~T~~~~iv~~D~r~~~~~--w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P--~~~~i~ 1242 (1431)
T KOG1240|consen 1167 VYATDLSRIVSWDTRMRHDA--WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP--ARAPIR 1242 (1431)
T ss_pred             EEEEeccceEEecchhhhhH--HhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc--ccCCcc
Confidence            44444566777776643210  00011112246889999999999999999999999999877777765532  223444


Q ss_pred             eEEEC---CCCCEEEEEc--CCCcEEEEECCCCceEEEeecC-------------------CCCCcEEEECCCeeEEEEc
Q 021648          233 EASFS---PEGMFVISGS--GDGSVYAWSVRSGKEVASWMSF-------------------DTEPPVIKWTPGSLMFVTG  288 (309)
Q Consensus       233 ~~~~s---p~g~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~-------------------~~~v~~l~~~p~~~~l~s~  288 (309)
                      .+...   |.....++++  .-+.+.+|++.+|.+-..+-.-                   .-.....++...+..+.+|
T Consensus      1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltg 1322 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTG 1322 (1431)
T ss_pred             eEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeec
Confidence            44444   3445555554  4678999999998765444221                   0011112233334577888


Q ss_pred             cceEEEeeecCCC
Q 021648          289 SSELSFWIPDLSK  301 (309)
Q Consensus       289 ~~d~~~~~~~~~~  301 (309)
                      ++|.++.-||...
T Consensus      1323 gsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1323 GSDMKIRKWDPTR 1335 (1431)
T ss_pred             CCccceeeccCCC
Confidence            8885555554433

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.1e-12  Score=118.77  Aligned_cols=206  Identities=12%  Similarity=0.125  Sum_probs=132.1

Q ss_pred             CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCe
Q 021648           33 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC  112 (309)
Q Consensus        33 ~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~  112 (309)
                      ..+.+||. .|...+.+..+...+...+|+|+++.+++.+.......|.+||+.+++... +....+.+....|+|||+.
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            35666665 355555555556678889999999999887644335679999999887543 3444456678899999987


Q ss_pred             EE-EecCCCcEEEeeCC--CceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEE
Q 021648          113 FI-SGSLDRTVLLWDQR--AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV  189 (309)
Q Consensus       113 l~-s~s~Dg~v~~Wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v  189 (309)
                      |+ +.+.|+...+|.+.  .+... .                                           +..+.......
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~~~-~-------------------------------------------lt~~~~~~~~~  289 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSGLR-R-------------------------------------------LTQSSGIDTEP  289 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCCcE-E-------------------------------------------CCCCCCCCcCe
Confidence            76 66778877777542  11100 0                                           00011112345


Q ss_pred             EEccCCCEEEEEeC-CCcEEEEE--CCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC---cEEEEECCCCceE
Q 021648          190 KFSNDGRLMLLTTM-EGHIHVLD--SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEV  263 (309)
Q Consensus       190 ~~s~dg~~l~~~~~-dg~v~i~d--~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg---~i~vwd~~~~~~~  263 (309)
                      .|||||+.++..+. +|...+|.  ...+.... ....   .......+|||||++|+..+.++   .|++||+.+++..
T Consensus       290 ~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~---g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~  365 (427)
T PRK02889        290 FFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFT---GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT  365 (427)
T ss_pred             EEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecC---CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence            79999998886654 35555554  44443322 1111   12233578999999999877665   6999999887643


Q ss_pred             EEeecCCCCCcEEEECCCeeEEEEccc
Q 021648          264 ASWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       264 ~~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                       .+.. .......+|+||++.|+.++.
T Consensus       366 -~lt~-~~~~~~p~~spdg~~l~~~~~  390 (427)
T PRK02889        366 -ALTD-TTRDESPSFAPNGRYILYATQ  390 (427)
T ss_pred             -EccC-CCCccCceECCCCCEEEEEEe
Confidence             3322 233467899999998877664

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.58  E-value=1.2e-11  Score=109.24  Aligned_cols=256  Identities=16%  Similarity=0.147  Sum_probs=159.4

Q ss_pred             EEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEE
Q 021648           26 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLS  105 (309)
Q Consensus        26 l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~  105 (309)
                      +++-..+++|.|.|..+.+.+..+.........+++++++++++.++.   |+.|.++|+.+++.++.++.-. ...+++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v~~i~~G~-~~~~i~   84 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVVATIKVGG-NPRGIA   84 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC---CCeEEEEECCcccEEEEEecCC-CcceEE
Confidence            356667999999999999999999875444445789999999888764   7899999999999888887544 468899


Q ss_pred             ecCCCCeEEEec-CCCcEEEeeCCCceeeeeeeecC--------ce-eEEECCCCcEEEEE--ECCEEEEEECCCCCcCC
Q 021648          106 LCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQG--------RP-AAAYDDQGLVFAVA--FGGYIRMFDARKYEKGP  173 (309)
Q Consensus       106 ~~~~~~~l~s~s-~Dg~v~~Wd~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~  173 (309)
                      +++||++++.+. .++.+.++|.++.+.+..+....        +. .....+....+...  ..+.|-+.|........
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~  164 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK  164 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred             EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence            999999888765 68999999999988777664432        12 22233444323333  34777777866542211


Q ss_pred             ceEEEeCCCCCCCeEEEEccCCCEEEEE-eCCCcEEEEECCCCeEeEEeeec-------------CCC------------
Q 021648          174 FDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVK-------------PVS------------  227 (309)
Q Consensus       174 ~~~~~~~~~~~~~~~v~~s~dg~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~-------------~~~------------  227 (309)
                      ......+   .......++|++++++.+ ..+..|.++|..++++.......             +..            
T Consensus       165 ~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~  241 (369)
T PF02239_consen  165 VTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF  241 (369)
T ss_dssp             EEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred             eeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence            1122221   123457899999987664 55678888998877665432110             000            


Q ss_pred             --------------------------CCccceEEECCCCCEEEEE----cCCCcEEEEECCCCceEEEeecCC-CCCcEE
Q 021648          228 --------------------------RNSTLEASFSPEGMFVISG----SGDGSVYAWSVRSGKEVASWMSFD-TEPPVI  276 (309)
Q Consensus       228 --------------------------~~~~~~~~~sp~g~~l~s~----s~Dg~i~vwd~~~~~~~~~~~~~~-~~v~~l  276 (309)
                                                .+.-.-+.-+|+++++...    ...++|.|+|.++.+.+.++.... ..+..+
T Consensus       242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~  321 (369)
T PF02239_consen  242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM  321 (369)
T ss_dssp             EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE
T ss_pred             ecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc
Confidence                                      0000125669999999998    455899999999987777764332 248899


Q ss_pred             EECCCeeEEEEc
Q 021648          277 KWTPGSLMFVTG  288 (309)
Q Consensus       277 ~~~p~~~~l~s~  288 (309)
                      .|+++|+.+...
T Consensus       322 ef~~dG~~v~vS  333 (369)
T PF02239_consen  322 EFNPDGKEVWVS  333 (369)
T ss_dssp             EE-TTSSEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            999999865443

...

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.58  E-value=1.8e-13  Score=119.47  Aligned_cols=260  Identities=12%  Similarity=0.114  Sum_probs=159.6

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCce--eeeeeccccceeE---EEE--ecCCCEEEEEcCCCCCceeE
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDL---VCF--TSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~--~~~~~~~~~~v~~---~~~--~~~~~~~~~~s~~g~d~~i~   81 (309)
                      .|..-|.++.|+.+...+.+++.+..++-||+.+.+.  +......-.....   ...  -...+.++.++.   |+.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~---DGkf~   88 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSN---DGRFV   88 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcC---CceEE
Confidence            4666778999998877776666555555566643221  1111110000000   000  011223444443   66676


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCC-cEEEEEEC
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVAFG  158 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~  158 (309)
                      +.+- +++.-+....|.+.+.+-.|+|||.-|+|++.||.|++|. +++....++.-..  .-++...|+. .++.+. +
T Consensus        89 il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g  165 (737)
T KOG1524|consen   89 ILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-G  165 (737)
T ss_pred             Eecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-C
Confidence            6652 3444566788999999999999999999999999999998 5554443332111  1233444443 333332 3


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  238 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp  238 (309)
                      +.+.+=.+.    ....+..-..|..-+.++.++|....+++|+.|=+-++||..- ..+.+.   ..|..++.+++|+|
T Consensus       166 ~h~~IKpL~----~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S---~~~ey~ITSva~np  237 (737)
T KOG1524|consen  166 GHISIKPLA----ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTS---AAEEYAITSVAFNP  237 (737)
T ss_pred             CeEEEeecc----cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccC---Chhccceeeeeecc
Confidence            333332221    1122333344556688899999999999999999999999764 333322   23567889999999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEe
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFW  295 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~  295 (309)
                      + +.++.+|.. ++|         +.  ....+.|..++|||||.+++.|.+..++.
T Consensus       238 d-~~~~v~S~n-t~R---------~~--~p~~GSifnlsWS~DGTQ~a~gt~~G~v~  281 (737)
T KOG1524|consen  238 E-KDYLLWSYN-TAR---------FS--SPRVGSIFNLSWSADGTQATCGTSTGQLI  281 (737)
T ss_pred             c-cceeeeeee-eee---------ec--CCCccceEEEEEcCCCceeeccccCceEE
Confidence            9 666666542 333         11  13446789999999999999998864443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.57  E-value=2.3e-12  Score=116.68  Aligned_cols=222  Identities=15%  Similarity=0.126  Sum_probs=140.2

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCC---CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D---~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +.+..+...+.+.+|+|||++|+.++.+   ..|.+||+.+++.... ..+...+...+|+|+++.++++.....+..|.
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~  261 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY  261 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence            4455667778899999999999887754   4799999988765432 22333455678999999887654333345799


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecC-CC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEEC
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  158 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (309)
                      +||+.+++. ..+..+........|+||++.|+..+. ++  .|.++|+.+++....                       
T Consensus       262 ~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l-----------------------  317 (417)
T TIGR02800       262 VMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL-----------------------  317 (417)
T ss_pred             EEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-----------------------
Confidence            999987764 334445555567789999998776553 33  344445433221000                       


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC---cEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  235 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  235 (309)
                                         ..  .........++|+|++++....++   .|.+||+.++.......     ........
T Consensus       318 -------------------~~--~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-----~~~~~~p~  371 (417)
T TIGR02800       318 -------------------TF--RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-----TGLDESPS  371 (417)
T ss_pred             -------------------ec--CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-----CCCCCCce
Confidence                               00  001233567999999999888775   78899987754432111     11223458


Q ss_pred             ECCCCCEEEEEcCCC---cEEEEECCCCceEEEeecCCCCCcEEEE
Q 021648          236 FSPEGMFVISGSGDG---SVYAWSVRSGKEVASWMSFDTEPPVIKW  278 (309)
Q Consensus       236 ~sp~g~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~v~~l~~  278 (309)
                      |+|||++|+..+.++   .+++.+. +++....+....+.+..++|
T Consensus       372 ~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       372 FAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             ECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCC
Confidence            999999998887765   4555554 34444544444444544444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=8.9e-13  Score=106.18  Aligned_cols=155  Identities=17%  Similarity=0.360  Sum_probs=102.9

Q ss_pred             EEEecCCCEEEEEcCCC-------CCceeEEEEccC-CceEEEeee-cccCEEEEEecCCCCeEEE--ecCCCcEEEeeC
Q 021648           59 VCFTSHPTTVIYSSKNG-------WDESLRLLSLHD-NKYLRYFKG-HHDRVVSLSLCSSKDCFIS--GSLDRTVLLWDQ  127 (309)
Q Consensus        59 ~~~~~~~~~~~~~s~~g-------~d~~i~~~d~~~-~~~~~~~~~-h~~~v~~v~~~~~~~~l~s--~s~Dg~v~~Wd~  127 (309)
                      +.|++.|++++.-....       +=+...+|-+.. +.....+.- ..++|.+++|+|+++.|+.  |..++.+.+||+
T Consensus        11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~   90 (194)
T PF08662_consen   11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV   90 (194)
T ss_pred             EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence            45556666554433210       112345555522 233444433 3457999999999997644  456789999997


Q ss_pred             CCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC---C
Q 021648          128 RAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---E  204 (309)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~---d  204 (309)
                      +.. .+.                                           .+  .....+.+.+||+|++++.++.   .
T Consensus        91 ~~~-~i~-------------------------------------------~~--~~~~~n~i~wsP~G~~l~~~g~~n~~  124 (194)
T PF08662_consen   91 KGK-KIF-------------------------------------------SF--GTQPRNTISWSPDGRFLVLAGFGNLN  124 (194)
T ss_pred             ccc-EeE-------------------------------------------ee--cCCCceEEEECCCCCEEEEEEccCCC
Confidence            411 110                                           00  0123567899999999999874   4


Q ss_pred             CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcC------CCcEEEEECCCCceEEE
Q 021648          205 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG------DGSVYAWSVRSGKEVAS  265 (309)
Q Consensus       205 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~------Dg~i~vwd~~~~~~~~~  265 (309)
                      |.+.+||..+.+.+.+.+     ...+..++|+|||+++++++.      |..++||+. .|+.+..
T Consensus       125 G~l~~wd~~~~~~i~~~~-----~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~  185 (194)
T PF08662_consen  125 GDLEFWDVRKKKKISTFE-----HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYK  185 (194)
T ss_pred             cEEEEEECCCCEEeeccc-----cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEe
Confidence            679999999888876654     234568999999999999974      789999999 4666654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.54  E-value=1.8e-12  Score=118.17  Aligned_cols=242  Identities=14%  Similarity=0.141  Sum_probs=155.7

Q ss_pred             CcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCce--eee----eeccccceeEEEEecCCCE--EEEEcCCCCCceeE
Q 021648           11 NGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATC--LKT----INSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLR   81 (309)
Q Consensus        11 ~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~--~~~----~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d~~i~   81 (309)
                      ..+|.+++|+| +..++|.|..+|.|-+||+..+.-  ...    ...|..++..+++..+...  +++++.   |+.|.
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss---DG~i~  318 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS---DGSIC  318 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec---CCcEe
Confidence            46899999999 567889999999999999986543  222    2346667888887665444  887775   88999


Q ss_pred             EEEccCCce------EEEee------ecccCEEEEEecC-CCCeEEEecCCCcEEE---eeCCCcee-----eeeeeec-
Q 021648           82 LLSLHDNKY------LRYFK------GHHDRVVSLSLCS-SKDCFISGSLDRTVLL---WDQRAEKC-----QGLLRVQ-  139 (309)
Q Consensus        82 ~~d~~~~~~------~~~~~------~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~---Wd~~~~~~-----~~~~~~~-  139 (309)
                      .|++..-..      .....      .-...++++.|.+ +.+.|+.|+.+|.|.-   ++.+....     ......+ 
T Consensus       319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~  398 (555)
T KOG1587|consen  319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI  398 (555)
T ss_pred             eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence            998754221      11111      1223578899987 5678999999998875   33332220     0001111 


Q ss_pred             -CceeEEECCC-CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCe
Q 021648          140 -GRPAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGT  216 (309)
Q Consensus       140 -~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~  216 (309)
                       ........|= ..++.++.|-+++||.......+   ++....+...+..+++||-. ..++++..||.+.+||+....
T Consensus       399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P---l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP---LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             cceEeeecCCCccceeeeeccceeEeccccCCCCc---chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence             1112222232 24555556999999986532222   22333333458889999976 566777889999999986433


Q ss_pred             EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          217 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      ..-..... ........+.|+++|+.|+.|...|++++|++..
T Consensus       476 ~~Pv~s~~-~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  476 EEPVLSQK-VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cCCccccc-ccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            22111111 1123345678999999999999999999999964

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=7.6e-12  Score=113.74  Aligned_cols=225  Identities=12%  Similarity=0.143  Sum_probs=142.7

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCC---CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D---~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +.+..|...+...+|+|||+.|+..+.+   ..|.+||+.+++..... .........+|+|+++.+++....+.+..|.
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy  270 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY  270 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-CCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence            4455667788999999999999877754   35888899887654322 2222344678999999887654333245788


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecC-CC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEEC
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  158 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (309)
                      ++|+.+++.. .+..+........|+||++.++-.+. ++  .|.++|+.+++....                       
T Consensus       271 ~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-----------------------  326 (430)
T PRK00178        271 VMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-----------------------  326 (430)
T ss_pred             EEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-----------------------
Confidence            9999887643 45556666677889999987765543 33  344445433321100                       


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC-C--cEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  235 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  235 (309)
                                         ...+  .......+||||+.++....+ +  .|.++|+.+++... +. ..   .......
T Consensus       327 -------------------t~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~---~~~~~p~  380 (430)
T PRK00178        327 -------------------TFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DT---SLDESPS  380 (430)
T ss_pred             -------------------ecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CC---CCCCCce
Confidence                               0000  011234789999998877653 3  58889988776432 21 11   1122458


Q ss_pred             ECCCCCEEEEEcCC---CcEEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648          236 FSPEGMFVISGSGD---GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG  281 (309)
Q Consensus       236 ~sp~g~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~  281 (309)
                      |+|||++++-.+.+   ..++++++. +.....+..+.+.+...+|+|-
T Consensus       381 ~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        381 VAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             ECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence            99999999887654   357778884 3444445555566777888874

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=7.1e-12  Score=114.06  Aligned_cols=221  Identities=16%  Similarity=0.120  Sum_probs=135.8

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCC-C--cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDD-E--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D-~--~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      .+...+.+..|+|||++|+-.+.+ +  .|.+||+.+++.... ..........+|+|+++.++++........|.++|+
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence            345567789999999998877653 3  477889887764322 211222345789999998877543222346888898


Q ss_pred             cCCceEEEeeecccCEEEEEecCCCCeEEEec-CCCc--EEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEE
Q 021648           86 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR  162 (309)
Q Consensus        86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~--v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (309)
                      ++++. ..+..+........|+||++.++..+ .++.  |.++|+.+++....                           
T Consensus       294 ~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L---------------------------  345 (448)
T PRK04792        294 ATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL---------------------------  345 (448)
T ss_pred             CCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE---------------------------
Confidence            87764 44455656667889999999776554 3343  33334433221100                           


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC-C--cEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                                     +..+.  .....++||||++++..+.+ +  .|.++|+.++.... +...    .......|+||
T Consensus       346 ---------------t~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~----~~d~~ps~spd  403 (448)
T PRK04792        346 ---------------TFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST----RLDESPSVAPN  403 (448)
T ss_pred             ---------------ecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC----CCCCCceECCC
Confidence                           00000  11234789999988776553 3  45667877765432 1111    11123479999


Q ss_pred             CCEEEEEcCCC---cEEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648          240 GMFVISGSGDG---SVYAWSVRSGKEVASWMSFDTEPPVIKWTPG  281 (309)
Q Consensus       240 g~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~  281 (309)
                      |++|+..+.++   .+++++. +++....+..+.+.+...+|+|-
T Consensus       404 G~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        404 GTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             CCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence            99987766543   3778887 55556666666667788889883

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.53  E-value=3.3e-10  Score=98.32  Aligned_cols=242  Identities=14%  Similarity=0.187  Sum_probs=152.3

Q ss_pred             eCCCCCEEEEeeC----------CCcEEEEEcCCCceeeeeecccc-------ceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648           19 FHKSSSYLVTASD----------DESIRLYDVTAATCLKTINSKKY-------GVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus        19 ~s~~~~~l~t~s~----------D~~v~iWd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ++|||+.|..+..          +..|.+||+.+++.+..+.....       ....++++++++.++..... -+..+.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~-p~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS-PSPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-CCCEEE
Confidence            8999998766665          78999999999999988875322       12368899999988876432 278999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee--eeee--c------CceeEEECCCCc
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRV--Q------GRPAAAYDDQGL  151 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~--~~~~--~------~~~~~~~~~~~~  151 (309)
                      +.|+++++.+..+.-- +...-...+++. .+ .-+.||......+.+.....  ...+  .      .++ .....++.
T Consensus       132 VvD~~~~kvv~ei~vp-~~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~  207 (352)
T TIGR02658       132 VVDLEGKAFVRMMDVP-DCYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGR  207 (352)
T ss_pred             EEECCCCcEEEEEeCC-CCcEEEEecCCc-cE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC-ceEcCCCc
Confidence            9999999887765431 111111111111 11 22235544433222111111  1111  0      111 11222567


Q ss_pred             EEEEEECCEEEEEECCCCCcC---CceEEEeCC-----CCCCCeEEEEccCCCEEEEEe----------CCCcEEEEECC
Q 021648          152 VFAVAFGGYIRMFDARKYEKG---PFDIFSVGG-----DISDANVVKFSNDGRLMLLTT----------MEGHIHVLDSF  213 (309)
Q Consensus       152 ~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~-----~~~~~~~v~~s~dg~~l~~~~----------~dg~v~i~d~~  213 (309)
                      .+-.++.|.|.+.|+......   +........     ......-++++|+++.+....          ..++|.++|..
T Consensus       208 ~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~  287 (352)
T TIGR02658       208 LVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK  287 (352)
T ss_pred             EEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC
Confidence            777777799999996442211   122222111     123334589999988776632          22589999999


Q ss_pred             CCeEeEEeeecCCCCCccceEEECCCCC-EEEEEc-CCCcEEEEECCCCceEEEeecC
Q 021648          214 RGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS-GDGSVYAWSVRSGKEVASWMSF  269 (309)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~  269 (309)
                      +++.+..+..    ...++.++++|||+ +|++.. .++.|.+.|+.+++.++++...
T Consensus       288 t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~v  341 (352)
T TIGR02658       288 TGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQL  341 (352)
T ss_pred             CCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccC
Confidence            9999987764    24667899999999 888775 6788999999999999887443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.53  E-value=7.9e-12  Score=102.87  Aligned_cols=161  Identities=14%  Similarity=0.241  Sum_probs=116.4

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcC-CCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      ...+|.+|.+.++  +++.. ..+.|.||... ..+.++.++....+-..++..|....-+.+..+-.-|+|++-|+...
T Consensus        93 f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~  169 (346)
T KOG2111|consen   93 FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST  169 (346)
T ss_pred             eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence            3567888888764  55555 57899999987 55667777655444445556565443333322333589999999776


Q ss_pred             ce--EEEeeecccCEEEEEecCCCCeEEEecCCCc-EEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEE
Q 021648           89 KY--LRYFKGHHDRVVSLSLCSSKDCFISGSLDRT-VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD  165 (309)
Q Consensus        89 ~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~-v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  165 (309)
                      +.  ...+..|...|.+++++-+|..+||+|..|| ||+||.+++..+..++..                          
T Consensus       170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG--------------------------  223 (346)
T KOG2111|consen  170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG--------------------------  223 (346)
T ss_pred             CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC--------------------------
Confidence            54  5778899999999999999999999999996 689998888665443321                          


Q ss_pred             CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 021648          166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  214 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~  214 (309)
                                     .....+.+++||||..+|++++..|+++||.++.
T Consensus       224 ---------------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  224 ---------------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             ---------------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence                           1224567888888888888888888888887654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1.8e-12  Score=109.32  Aligned_cols=246  Identities=14%  Similarity=0.184  Sum_probs=168.0

Q ss_pred             eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC------CceEEEeeecc-cCEEEEEecCCCCeEEEec
Q 021648           45 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD------NKYLRYFKGHH-DRVVSLSLCSSKDCFISGS  117 (309)
Q Consensus        45 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~------~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~s  117 (309)
                      |.+.+.+|..-|..+.|+.++..++++   |-|..+++|.++.      .+++.....|+ ..|.+++|...++.+.+|+
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SG---GDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~  124 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASG---GDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE  124 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeec---CCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence            445567777778999999997777755   4589999999853      34555554444 8899999999889999999


Q ss_pred             CCCcEEEeeCCCceeeeeeeecCcee----EEECCCCcEEE-EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEc
Q 021648          118 LDRTVLLWDQRAEKCQGLLRVQGRPA----AAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS  192 (309)
Q Consensus       118 ~Dg~v~~Wd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s  192 (309)
                      .+++|..-|+++.+.+.+........    ...+|...+++ +..++.+.+||.|.... +...+.++........+.|.
T Consensus       125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~-~~~~~~~AN~~~~F~t~~F~  203 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN-PISLVLPANSGKNFYTAEFH  203 (609)
T ss_pred             CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC-CCceeeecCCCccceeeeec
Confidence            99999999999887766554332211    22344444444 45679999999986443 34445555555566778899


Q ss_pred             cCC-CEEEEEeCCCcEEEEECCCCe--EeEEeeecCCCC--CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee
Q 021648          193 NDG-RLMLLTTMEGHIHVLDSFRGT--LLSTYNVKPVSR--NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM  267 (309)
Q Consensus       193 ~dg-~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~~--~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~  267 (309)
                      |.- .+|++.+..+-+.+||.+...  ++..........  ..-..+.|+|+|+.+++--.-.+=-.||+.+.++..-..
T Consensus       204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS  283 (609)
T ss_pred             CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence            964 677888888999999987532  111111111111  122468899999999988777777889988765533222


Q ss_pred             cCC-------CCCcEEEECCCeeEEEEccce--EEEe
Q 021648          268 SFD-------TEPPVIKWTPGSLMFVTGSSE--LSFW  295 (309)
Q Consensus       268 ~~~-------~~v~~l~~~p~~~~l~s~~~d--~~~~  295 (309)
                      .|+       +.+.+.+|.-|.. +++|+.+  +++|
T Consensus       284 D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~W  319 (609)
T KOG4227|consen  284 DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIW  319 (609)
T ss_pred             cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEE
Confidence            333       3456677765544 8888887  5666

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.53  E-value=3.6e-14  Score=129.40  Aligned_cols=244  Identities=16%  Similarity=0.247  Sum_probs=178.4

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      .+.+++||++.|+.++.+.+..++|++|.|.-||+|-+.++..+..+.+|...|+.++|+|-.    ++   +-|+++++
T Consensus       224 ~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----ss---s~dgt~~~  296 (1113)
T KOG0644|consen  224 CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SS---SDDGTCRI  296 (1113)
T ss_pred             hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cC---CCCCceEe
Confidence            456789999999999999999999999999999999999999999999999999999999864    22   34899999


Q ss_pred             EEccCCceEEE---ee-ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeee-ecCceeEEECCCCcEEEEEE
Q 021648           83 LSLHDNKYLRY---FK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF  157 (309)
Q Consensus        83 ~d~~~~~~~~~---~~-~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  157 (309)
                      ||..-...+..   ++ .-.+.+-++.|...+..++|++.|+.-+.|.+..-.+..... +...   ...-+...++...
T Consensus       297 wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~---ssd~~~~~~~ar~  373 (1113)
T KOG0644|consen  297 WDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTR---SSDLSSIVVTARN  373 (1113)
T ss_pred             ccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEec---cccccccceeeee
Confidence            99762111100   11 122456777888888899999999999999764332211110 0000   0011123444456


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      +-.+++|++-.+..    .+.+.++...+..+.+.|=. +...+++.||...|||+..|..++.+..   .........|
T Consensus       374 ~~~~~vwnl~~g~l----~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~---gh~kl~d~kF  446 (1113)
T KOG0644|consen  374 DHRLCVWNLYTGQL----LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI---GHGKLVDGKF  446 (1113)
T ss_pred             eeEeeeeecccchh----hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec---ccceeecccc
Confidence            67888898765421    23445666778888998855 4555789999999999999988877663   2456778899


Q ss_pred             CCCCCEEEEEcCCCcEEEEECCCCceE
Q 021648          237 SPEGMFVISGSGDGSVYAWSVRSGKEV  263 (309)
Q Consensus       237 sp~g~~l~s~s~Dg~i~vwd~~~~~~~  263 (309)
                      |+||+.++..-.-|.++|.....++..
T Consensus       447 Sqdgts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  447 SQDGTSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             CCCCceEecCCCCCceEEeccCCCccc
Confidence            999999999988899999987665543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.52  E-value=1.1e-12  Score=107.96  Aligned_cols=207  Identities=15%  Similarity=0.174  Sum_probs=148.9

Q ss_pred             ccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc---eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeC
Q 021648           51 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ  127 (309)
Q Consensus        51 ~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~---~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~  127 (309)
                      ....++++-||+++...++.+..   ...+-+|.....+   ...+++.|...|++|+|+|..+.++||+.|+.-.+|..
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~---~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPN---NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             eccCceeeeeecCCCceEEeccC---CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            34457889999999999988764   5689999876655   57789999999999999999999999999999999986


Q ss_pred             C-CceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCc
Q 021648          128 R-AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH  206 (309)
Q Consensus       128 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~  206 (309)
                      . .+....++.                                      ++.+   .-.+.+|.++|....+++|+....
T Consensus        85 ~~~~~Wkptlv--------------------------------------LlRi---NrAAt~V~WsP~enkFAVgSgar~  123 (361)
T KOG1523|consen   85 PSGGTWKPTLV--------------------------------------LLRI---NRAATCVKWSPKENKFAVGSGARL  123 (361)
T ss_pred             CCCCeecccee--------------------------------------EEEe---ccceeeEeecCcCceEEeccCccE
Confidence            3 232221111                                      1111   123678999999999999999999


Q ss_pred             EEEEECCCCeEe--EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEEC-----CC-------------CceEEEe
Q 021648          207 IHVLDSFRGTLL--STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV-----RS-------------GKEVASW  266 (309)
Q Consensus       207 v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~-----~~-------------~~~~~~~  266 (309)
                      |.||-.+.-+--  .....++ ....|.+++|+|++-.+++||.|+.+||+..     ++             |+.+.++
T Consensus       124 isVcy~E~ENdWWVsKhikkP-irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~  202 (361)
T KOG1523|consen  124 ISVCYYEQENDWWVSKHIKKP-IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA  202 (361)
T ss_pred             EEEEEEecccceehhhhhCCc-cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh
Confidence            999865332111  0001112 2456788999999999999999999999984     11             1122333


Q ss_pred             ecCCCCCcEEEECCCeeEEEEccceEEEeeecCCCc
Q 021648          267 MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL  302 (309)
Q Consensus       267 ~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~  302 (309)
                      ..-.+-+..+.|+|+|..|+-.+-|-.+-..+...+
T Consensus       203 ~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  203 SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            334567888999999999988877755555554444

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=6.9e-12  Score=105.77  Aligned_cols=259  Identities=14%  Similarity=0.147  Sum_probs=170.4

Q ss_pred             CcceEEEEeCCCC--CEEEEeeCCCcEEEEEcCCCceeeee------eccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648           11 NGRISSMDFHKSS--SYLVTASDDESIRLYDVTAATCLKTI------NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus        11 ~~~V~~i~~s~~~--~~l~t~s~D~~v~iWd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ...|+++.|..++  ..+...+.|..+...++....+...+      .....++..+... ++ .++++..   ++.+.+
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~---sG~l~~  129 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVS---SGNLQV  129 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEec---CCcEEE
Confidence            3467778886544  56777778888888887765554332      2223333333332 22 4444433   678999


Q ss_pred             EEccCCc----eEEEeeecccCEEEEEecCC-CCeEEEecCC--CcEEEeeCCCceeeee-eeecC------cee----E
Q 021648           83 LSLHDNK----YLRYFKGHHDRVVSLSLCSS-KDCFISGSLD--RTVLLWDQRAEKCQGL-LRVQG------RPA----A  144 (309)
Q Consensus        83 ~d~~~~~----~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~D--g~v~~Wd~~~~~~~~~-~~~~~------~~~----~  144 (309)
                      |..+.+.    .+..+.-+ ..+..+.-++. ...+++|+..  ..+++||+++.+.+.. ..++.      .+.    .
T Consensus       130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi  208 (412)
T KOG3881|consen  130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDI  208 (412)
T ss_pred             EeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccc
Confidence            9887432    22223323 33445555553 4567779988  8999999987643321 11111      111    1


Q ss_pred             EECC---CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEE-
Q 021648          145 AYDD---QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST-  220 (309)
Q Consensus       145 ~~~~---~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~-  220 (309)
                      .|-+   ...++++..-+.+|+||.+...+ |+..+.+  ....+.++...|+|+++.++..-|.+..||++.+.++.. 
T Consensus       209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-PV~~fd~--~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~  285 (412)
T KOG3881|consen  209 RFLEGSPNYKFATITRYHQVRLYDTRHQRR-PVAQFDF--LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG  285 (412)
T ss_pred             eecCCCCCceEEEEecceeEEEecCcccCc-ceeEecc--ccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence            2222   34566666779999999996543 4444433  345788999999999999999999999999999988765 


Q ss_pred             eeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCe
Q 021648          221 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS  282 (309)
Q Consensus       221 ~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~  282 (309)
                      +.   ...+.+..+-.+|.++++|++|.|..+||+|+.+.+.+... ...+.+++|.+.++-
T Consensus       286 ~k---g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~~~~  343 (412)
T KOG3881|consen  286 LK---GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLRDDV  343 (412)
T ss_pred             cC---CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-hhhccccEEEecCCc
Confidence            33   23467778899999999999999999999999996655432 234567888887654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.51  E-value=4.4e-13  Score=107.56  Aligned_cols=205  Identities=17%  Similarity=0.202  Sum_probs=140.4

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC--------------Cceeeeeeccccc-------------------
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--------------ATCLKTINSKKYG-------------------   55 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~--------------~~~~~~~~~~~~~-------------------   55 (309)
                      .|...|+.+.--|+ ..|.|-+.|.++.+|++..              +-|...+......                   
T Consensus        54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D  132 (323)
T KOG0322|consen   54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD  132 (323)
T ss_pred             hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence            45667888888886 5788999999999999875              2222211100000                   


Q ss_pred             ------e------------eEEEEe---cCCCEEEEEcCCCCCceeEEEEccCCc----------eEEEeeecccCEEEE
Q 021648           56 ------V------------DLVCFT---SHPTTVIYSSKNGWDESLRLLSLHDNK----------YLRYFKGHHDRVVSL  104 (309)
Q Consensus        56 ------v------------~~~~~~---~~~~~~~~~s~~g~d~~i~~~d~~~~~----------~~~~~~~h~~~v~~v  104 (309)
                            +            ..+|+.   ..+.+++..+ +-.++.+-+||+.++.          .......|..+|.++
T Consensus       133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~llla-GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsl  211 (323)
T KOG0322|consen  133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLA-GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSL  211 (323)
T ss_pred             cCccceeEccCchhccccCceeeeeccccccceEEEEE-eccCCeEEEEEccCCceeeccccccccccchhhccCcceee
Confidence                  0            122232   1233333322 2237899999998873          233445799999999


Q ss_pred             EecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCC
Q 021648          105 SLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDIS  184 (309)
Q Consensus       105 ~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  184 (309)
                      ++.+.-..=++++.+..+..|++.-......+  .                   +.+                ++  ...
T Consensus       212 dyas~~~rGisgga~dkl~~~Sl~~s~gslq~--~-------------------~e~----------------~l--knp  252 (323)
T KOG0322|consen  212 DYASSCDRGISGGADDKLVMYSLNHSTGSLQI--R-------------------KEI----------------TL--KNP  252 (323)
T ss_pred             eechhhcCCcCCCccccceeeeeccccCcccc--c-------------------ceE----------------Ee--cCC
Confidence            99876555678888888888876422100000  0                   000                00  123


Q ss_pred             CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEEC
Q 021648          185 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  257 (309)
Q Consensus       185 ~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~  257 (309)
                      .+..+.+=||++.+|+++=|++||||..++...+..+..   |...+.+++|+||...+|+||.|+.|.+|++
T Consensus       253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky---Hsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY---HSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh---hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            466788999999999999999999999999988877664   4577889999999999999999999999986

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=7.7e-12  Score=110.24  Aligned_cols=239  Identities=17%  Similarity=0.259  Sum_probs=159.3

Q ss_pred             ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecc-cCEEEEEe-cCCCCeEEEecCCCcEEEeeCCCcee
Q 021648           55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH-DRVVSLSL-CSSKDCFISGSLDRTVLLWDQRAEKC  132 (309)
Q Consensus        55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~-~~v~~v~~-~~~~~~l~s~s~Dg~v~~Wd~~~~~~  132 (309)
                      ..+.+.++|||.+++++.  -+...|++||+.+-. ++ |..|. +.+..+.. +.|-..++--..|++|.+-..-..  
T Consensus        53 ast~ik~s~DGqY~lAtG--~YKP~ikvydlanLS-LK-FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~--  126 (703)
T KOG2321|consen   53 ASTRIKVSPDGQYLLATG--TYKPQIKVYDLANLS-LK-FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR--  126 (703)
T ss_pred             ccceeEecCCCcEEEEec--ccCCceEEEEcccce-ee-eeecccccceeEEEeccchhhheEeecCceeeehhhcCe--
Confidence            356788999999988764  578899999997643 22 34454 34444443 444444555556888887642211  


Q ss_pred             eeeeeec--CceeEEECC-CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEE
Q 021648          133 QGLLRVQ--GRPAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV  209 (309)
Q Consensus       133 ~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i  209 (309)
                      ...++++  +.. ..|+. .--++.++.+..|+-+++...   .+ +..+......+++|.+++...+|++|+.+|.|-.
T Consensus       127 hy~~RIP~~GRD-m~y~~~scDly~~gsg~evYRlNLEqG---rf-L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf  201 (703)
T KOG2321|consen  127 HYRTRIPKFGRD-MKYHKPSCDLYLVGSGSEVYRLNLEQG---RF-LNPFETDSGELNVVSINEEHGLLACGTEDGVVEF  201 (703)
T ss_pred             eeeeecCcCCcc-ccccCCCccEEEeecCcceEEEEcccc---cc-ccccccccccceeeeecCccceEEecccCceEEE
Confidence            1122222  221 33432 334666777778888887543   22 1122233467899999999999999999999999


Q ss_pred             EECCCCeEeEEeeecCC---C-----CCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-ecCCCCCcEEEECC
Q 021648          210 LDSFRGTLLSTYNVKPV---S-----RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTP  280 (309)
Q Consensus       210 ~d~~~~~~~~~~~~~~~---~-----~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~~p  280 (309)
                      ||.+......++.....   +     ...|.++.|+.+|-.++.|..+|.+.|||+++.+++..- ....-+|..+.|.+
T Consensus       202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~  281 (703)
T KOG2321|consen  202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD  281 (703)
T ss_pred             ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence            99988776666553221   1     124788999999999999999999999999988775432 23345678899988


Q ss_pred             Ce--eEEEEccc-eEEEeeecCCCccc
Q 021648          281 GS--LMFVTGSS-ELSFWIPDLSKLGA  304 (309)
Q Consensus       281 ~~--~~l~s~~~-d~~~~~~~~~~~~~  304 (309)
                      .+  ..++|..+ .+++|...-++...
T Consensus       282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~a  308 (703)
T KOG2321|consen  282 TDQQNKVVSMDKRILKIWDECTGKPMA  308 (703)
T ss_pred             cCCCceEEecchHHhhhcccccCCcee
Confidence            63  45666554 48999887665543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=5.2e-12  Score=105.64  Aligned_cols=223  Identities=17%  Similarity=0.317  Sum_probs=147.8

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecc-ccceeEEEEecCCCE-EEEEcCCCCCceeEEEEccC---
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHD---   87 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~s~~g~d~~i~~~d~~~---   87 (309)
                      -+..++|+|.-.-+|.+..|-+||+||-.. ++...+... +..|.+++|.|.+.. ++.+..    .-|.+|....   
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr----~gIciW~~s~tln  174 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR----AGICIWSDSRTLN  174 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec----ceeEEEEcCcccc
Confidence            467889999666789999999999999776 555555443 445899999996654 444443    3489997532   


Q ss_pred             -Cce----------EEEeeecccCEEEEEecCCCCeEEEecC-CCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEE
Q 021648           88 -NKY----------LRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  155 (309)
Q Consensus        88 -~~~----------~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (309)
                       +..          +....|| ..|+++.|.+||..++++|. |..|.+||..++.++.....                 
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-----------------  236 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-----------------  236 (445)
T ss_pred             cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-----------------
Confidence             111          2223345 68999999999999999985 67999999988765433210                 


Q ss_pred             EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-CeEeEEeeecCCCCCccceE
Q 021648          156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~  234 (309)
                                                ....+.-+.+||||.++.+++-|+.-++|+... -....-    ....+.+...
T Consensus       237 --------------------------glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw----~lgsgrvqta  286 (445)
T KOG2139|consen  237 --------------------------GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW----ILGSGRVQTA  286 (445)
T ss_pred             --------------------------CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce----eccCCceeee
Confidence                                      012345678999999999999999999995432 222211    1233477788


Q ss_pred             EECCCCCEEEEEcCCCcEEEEECCCC-c--------------eEEEee------c---CCCCCcEEEECCCeeEEEEcc
Q 021648          235 SFSPEGMFVISGSGDGSVYAWSVRSG-K--------------EVASWM------S---FDTEPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~-~--------------~~~~~~------~---~~~~v~~l~~~p~~~~l~s~~  289 (309)
                      +|+|+|++|+-+.. |.=++|.+.-. +              .+..+.      +   .-+++-+++|.|.|.+++.--
T Consensus       287 cWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  287 CWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             eecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence            99999988765543 22334443210 0              111111      1   135667899999988776643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.49  E-value=7.3e-10  Score=96.18  Aligned_cols=260  Identities=11%  Similarity=0.038  Sum_probs=158.6

Q ss_pred             CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC-------CCCceeEEEEccCCceEEEeeecc-------
Q 021648           33 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDNKYLRYFKGHH-------   98 (309)
Q Consensus        33 ~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------g~d~~i~~~d~~~~~~~~~~~~h~-------   98 (309)
                      ++|.+.|..+++.+.++.....+-. + ++++++.++.+...       --+..|.+||.++.+.+..+.--.       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            8999999999999999887655443 4 99999988877640       026789999999999887776321       


Q ss_pred             cCEEEEEecCCCCeEEEec--CCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceE
Q 021648           99 DRVVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI  176 (309)
Q Consensus        99 ~~v~~v~~~~~~~~l~s~s--~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  176 (309)
                      ......+++|||+++..+.  .+..|-+.|+.+++.+..+.++.-...........+..+.|+......+..........
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence            2234678899999887665  37899999999999888776654222211222222223334333322211100000000


Q ss_pred             EEe-CCCCCC--CeEEEEcc-CCCEEEEEeCCCcEEEEECCC-----CeEeEEeeecCC----CCCccceEEECCCCCEE
Q 021648          177 FSV-GGDISD--ANVVKFSN-DGRLMLLTTMEGHIHVLDSFR-----GTLLSTYNVKPV----SRNSTLEASFSPEGMFV  243 (309)
Q Consensus       177 ~~~-~~~~~~--~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~-----~~~~~~~~~~~~----~~~~~~~~~~sp~g~~l  243 (309)
                      ..+ .+....  .+- .|++ +|+++..... |+|++.|+..     ......+.....    .....--++++|+|+++
T Consensus       185 ~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l  262 (352)
T TIGR02658       185 TEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI  262 (352)
T ss_pred             eeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence            000 000000  000 3466 7776655544 9999999533     222222211100    01111128999999988


Q ss_pred             EEEc----------CCCcEEEEECCCCceEEEeecCCCCCcEEEECCCee-EEEEcc---ceEEEeee
Q 021648          244 ISGS----------GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGS---SELSFWIP  297 (309)
Q Consensus       244 ~s~s----------~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~~---~d~~~~~~  297 (309)
                      +...          ..+.|-++|+.+++.+..+.. ...+..++++||++ +|....   .++.+...
T Consensus       263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence            8743          124799999999998888753 45788999999998 665544   23665554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.49  E-value=6.1e-11  Score=107.39  Aligned_cols=205  Identities=14%  Similarity=0.163  Sum_probs=132.8

Q ss_pred             cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeE
Q 021648           34 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF  113 (309)
Q Consensus        34 ~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l  113 (309)
                      .|.++|... ...+.+..+...+...+|+|+++.+++++..+....|.+||+.+++.. .+..+.+.+.++.|+||++.|
T Consensus       171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEE
Confidence            567777753 334445555555777889999999988765443468999999887643 334466667788999999866


Q ss_pred             E-EecCCC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEE
Q 021648          114 I-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK  190 (309)
Q Consensus       114 ~-s~s~Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~  190 (309)
                      + +.+.++  .|.+||+.+++......                                            .........
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~--------------------------------------------~~~~~~~~~  284 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLTRLTN--------------------------------------------GPGIDTEPS  284 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEEECCC--------------------------------------------CCCCCCCEE
Confidence            5 445444  46677765443211100                                            001112346


Q ss_pred             EccCCCEEEEEeCC-C--cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC---cEEEEECCCCceEE
Q 021648          191 FSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEVA  264 (309)
Q Consensus       191 ~s~dg~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg---~i~vwd~~~~~~~~  264 (309)
                      |+|||+.++..+.. +  .|+++|+.+++... +..   .........|+|+|++++.++.++   .|.+||+.+++. .
T Consensus       285 ~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~---~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~  359 (417)
T TIGR02800       285 WSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF---RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-R  359 (417)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec---CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-E
Confidence            88999988766543 2  68888887665432 221   223445679999999999998876   899999987543 2


Q ss_pred             EeecCCCCCcEEEECCCeeEEEEccc
Q 021648          265 SWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       265 ~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      .+.. .......+|+||++.|+..+.
T Consensus       360 ~l~~-~~~~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       360 VLTD-TGLDESPSFAPNGRMILYATT  384 (417)
T ss_pred             EccC-CCCCCCceECCCCCEEEEEEe
Confidence            2222 223455689999988777665

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.49  E-value=1.9e-12  Score=104.30  Aligned_cols=114  Identities=11%  Similarity=0.269  Sum_probs=92.0

Q ss_pred             CCcceEEEEeCCCCCEEEE--eeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648           10 YNGRISSMDFHKSSSYLVT--ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   87 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t--~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~   87 (309)
                      .+++|.+++|+|+|+.+|.  |..++.|.+||+. ++.+..+.  ...+..+.|+|+|++++.++.++..+.+.+||+.+
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~  134 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK  134 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            3567999999999998654  4468899999996 66666665  34567899999999999987666678999999998


Q ss_pred             CceEEEeeecccCEEEEEecCCCCeEEEecC------CCcEEEeeCC
Q 021648           88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSL------DRTVLLWDQR  128 (309)
Q Consensus        88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~------Dg~v~~Wd~~  128 (309)
                      .+.+..+. | ..+..++|+|||++|+++..      |..++||++.
T Consensus       135 ~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  135 KKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             CEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            87776654 3 35789999999999999864      7888999974

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.47  E-value=2.1e-13  Score=119.00  Aligned_cols=95  Identities=22%  Similarity=0.399  Sum_probs=82.5

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   90 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~   90 (309)
                      ++.|+..+|+|||++||+.|.||.+||+|..+.+.+.....==.+..++||+||+++++++   |.|.-|.||.++.++.
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtG---GEDDLVtVwSf~erRV  366 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTG---GEDDLVTVWSFEERRV  366 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEec---CCcceEEEEEeccceE
Confidence            4589999999999999999999999999999877655443322357899999999999986   4588999999999999


Q ss_pred             EEEeeecccCEEEEEecC
Q 021648           91 LRYFKGHHDRVVSLSLCS  108 (309)
Q Consensus        91 ~~~~~~h~~~v~~v~~~~  108 (309)
                      +..-+||+..|..|+|.|
T Consensus       367 VARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  367 VARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEeccccccceeeEeecc
Confidence            999999999999999984

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.44  E-value=5.6e-09  Score=92.10  Aligned_cols=271  Identities=14%  Similarity=0.194  Sum_probs=164.0

Q ss_pred             EEEeeCC----CcEEEEEc--CCCcee--eeeeccccceeEEEEecCCCEEEEEcCCC-CCceeEEEEccCC--c--eEE
Q 021648           26 LVTASDD----ESIRLYDV--TAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNG-WDESLRLLSLHDN--K--YLR   92 (309)
Q Consensus        26 l~t~s~D----~~v~iWd~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~s~~g-~d~~i~~~d~~~~--~--~~~   92 (309)
                      +..|+++    +.|.+|++  ++++..  ..+. ......-++++++++.++++...+ .++.|..|.+...  +  .+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            3456665    68888887  344332  2222 222356688999998888876543 4789999998764  3  222


Q ss_pred             EeeecccCEEEEEecCCCCeEEEec-CCCcEEEeeCCC-ceeeee---eee---------c--Cc-eeEEECCCCcEEEE
Q 021648           93 YFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRA-EKCQGL---LRV---------Q--GR-PAAAYDDQGLVFAV  155 (309)
Q Consensus        93 ~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~~-~~~~~~---~~~---------~--~~-~~~~~~~~~~~~~~  155 (309)
                      .........-.++++|++++|+.+. .+|++.++++.. +.....   +..         +  .+ ..+.+.|++..+.+
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            2222233456788999999888886 489999999876 333222   111         0  11 24567777765555


Q ss_pred             EE--CCEEEEEECCCCCcCCceE-EEeC-CCCCCCeEEEEccCCCEE-EEEeCCCcEEEEECC--CCeEeE--EeeecCC
Q 021648          156 AF--GGYIRMFDARKYEKGPFDI-FSVG-GDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSF--RGTLLS--TYNVKPV  226 (309)
Q Consensus       156 ~~--~~~i~~~d~~~~~~~~~~~-~~~~-~~~~~~~~v~~s~dg~~l-~~~~~dg~v~i~d~~--~~~~~~--~~~~~~~  226 (309)
                      ..  .+.|.+|++..... .+.. ..+. ......+-++|+|+|+++ +....+++|.+++..  ++.+..  .....+.
T Consensus       161 ~dlG~D~v~~~~~~~~~~-~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~  239 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTG-KLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE  239 (345)
T ss_dssp             EETTTTEEEEEEE-TTS--TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred             EecCCCEEEEEEEeCCCc-eEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence            53  46899999865331 1211 1111 222456789999999876 455678899999887  454332  2221111


Q ss_pred             ---CCCccceEEECCCCCEEEEEc-CCCcEEEEECC--CCc--eEEEeecCCCCCcEEEECCCeeEEEEccc---eEEEe
Q 021648          227 ---SRNSTLEASFSPEGMFVISGS-GDGSVYAWSVR--SGK--EVASWMSFDTEPPVIKWTPGSLMFVTGSS---ELSFW  295 (309)
Q Consensus       227 ---~~~~~~~~~~sp~g~~l~s~s-~Dg~i~vwd~~--~~~--~~~~~~~~~~~v~~l~~~p~~~~l~s~~~---d~~~~  295 (309)
                         .......++++|||++|+++. .+++|.+|++.  +++  .+..+......+..++++|++++|+.+..   .+.++
T Consensus       240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf  319 (345)
T PF10282_consen  240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF  319 (345)
T ss_dssp             TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence               112456789999999988774 56789999993  233  23444444445788999999998877664   37777


Q ss_pred             eec
Q 021648          296 IPD  298 (309)
Q Consensus       296 ~~~  298 (309)
                      ..+
T Consensus       320 ~~d  322 (345)
T PF10282_consen  320 DID  322 (345)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            664

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=1.6e-10  Score=105.06  Aligned_cols=214  Identities=11%  Similarity=0.067  Sum_probs=131.7

Q ss_pred             cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeE
Q 021648           34 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF  113 (309)
Q Consensus        34 ~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l  113 (309)
                      .|.++|.+.+ ..+.+..+...+....|+|+++.+++.+.......|.+||+.+++... +....+.+....|+|||+.|
T Consensus       180 ~l~~~d~~g~-~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGA-RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCC-CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            3666677644 445554555567888999999999887654334579999998876433 33334445578999999877


Q ss_pred             E-EecCCC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEE
Q 021648          114 I-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK  190 (309)
Q Consensus       114 ~-s~s~Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~  190 (309)
                      + +.+.++  .|.+||+++++.....                                            ..........
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~lt--------------------------------------------~~~~~~~~~~  293 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSRVT--------------------------------------------NHPAIDTEPF  293 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEcc--------------------------------------------cCCCCcCCeE
Confidence            6 555555  4556666544321100                                            0001123457


Q ss_pred             EccCCCEEEEEeC-C--CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC---cEEEEECCCCceEE
Q 021648          191 FSNDGRLMLLTTM-E--GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEVA  264 (309)
Q Consensus       191 ~s~dg~~l~~~~~-d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg---~i~vwd~~~~~~~~  264 (309)
                      |+|||+.++..+. +  ..|+++|+.+++... +...   ........|+|||++|+..+.++   .|.+||+.+++. .
T Consensus       294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~---~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~  368 (430)
T PRK00178        294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV---GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-R  368 (430)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC---CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-E
Confidence            8999998776654 2  357778887766432 2111   12223468999999998876543   588899988754 2


Q ss_pred             EeecCCCCCcEEEECCCeeEEEEccce---EEEeeecC
Q 021648          265 SWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFWIPDL  299 (309)
Q Consensus       265 ~~~~~~~~v~~l~~~p~~~~l~s~~~d---~~~~~~~~  299 (309)
                      .+. .........|+|||++++..+.+   ..++..++
T Consensus       369 ~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        369 ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            222 22223356899999988766542   44554433

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.42  E-value=2.5e-11  Score=101.04  Aligned_cols=245  Identities=20%  Similarity=0.321  Sum_probs=154.3

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc-----eeeeeecccc------------ceeEEEEecCCCE--EEEE
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----CLKTINSKKY------------GVDLVCFTSHPTT--VIYS   71 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~-----~~~~~~~~~~------------~v~~~~~~~~~~~--~~~~   71 (309)
                      ..-|++|.|+..|.+||||..+|.|-++.-....     -..++..|..            .+..+.+.++++.  ++.+
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4568899999999999999999999999543211     1122222321            2445566665542  2322


Q ss_pred             cCCCCCceeEEEEccCCce-----------------------------------EEEe-eecccCEEEEEecCCCCeEEE
Q 021648           72 SKNGWDESLRLLSLHDNKY-----------------------------------LRYF-KGHHDRVVSLSLCSSKDCFIS  115 (309)
Q Consensus        72 s~~g~d~~i~~~d~~~~~~-----------------------------------~~~~-~~h~~~v~~v~~~~~~~~l~s  115 (309)
                      .   -|.+|++|-+.....                                   ++.+ .+|+..|+++.++.|..+++|
T Consensus       105 t---NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  105 T---NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             c---CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence            2   289999998743211                                   1222 268889999999999999998


Q ss_pred             ecCCCcEEEeeCCCce-eeeeeee--cC-------ceeEEECCC--CcEEEEEECCEEEEEECCCCCcCC--ceEEEe--
Q 021648          116 GSLDRTVLLWDQRAEK-CQGLLRV--QG-------RPAAAYDDQ--GLVFAVAFGGYIRMFDARKYEKGP--FDIFSV--  179 (309)
Q Consensus       116 ~s~Dg~v~~Wd~~~~~-~~~~~~~--~~-------~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~--  179 (309)
                      +. |=.|.+|.++-.. +...+..  ..       ..+..++|.  ..+...++.|+|++-|+|......  ..++..  
T Consensus       182 AD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  182 AD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             cc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            85 7789999876322 1111111  10       122344443  345555677999999998421100  001110  


Q ss_pred             --------CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC-CCeEeEEeeecCCC---------CCcc---ceEEECC
Q 021648          180 --------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVS---------RNST---LEASFSP  238 (309)
Q Consensus       180 --------~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~---------~~~~---~~~~~sp  238 (309)
                              ....+.+..+.||++|+++++... -+|++||+. ....+.++..+...         ..++   ..++|+-
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg  339 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG  339 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence                    111246778899999999987643 479999983 34555555433111         1122   3589999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCC
Q 021648          239 EGMFVISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~  260 (309)
                      ++.+++|||....++++++..+
T Consensus       340 ~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  340 NDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             CcceEecccccceEEEecCCCC
Confidence            9999999999999999996554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=1.8e-12  Score=113.57  Aligned_cols=205  Identities=15%  Similarity=0.173  Sum_probs=135.8

Q ss_pred             EEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC---ceeEEE---CCCCcEEEEEECCEEEEEE
Q 021648           92 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAY---DDQGLVFAVAFGGYIRMFD  165 (309)
Q Consensus        92 ~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~i~~~d  165 (309)
                      ..+.||++-|++++|+.+|.+|+|||.|-.+.+||.-..+..+.+....   ..++.+   ..+..+++++.|..|++||
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            4588999999999999999999999999999999987777666664332   112222   2445677777899999999


Q ss_pred             CCCCCcCC------ceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEee--------ecCCCCCc
Q 021648          166 ARKYEKGP------FDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYN--------VKPVSRNS  230 (309)
Q Consensus       166 ~~~~~~~~------~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~--------~~~~~~~~  230 (309)
                      +...+.+.      ........|...|..++..|++ ..+.+++.||+++-+|++....-..-+        ..+. --.
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~-lie  202 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ-LIE  202 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh-hhe
Confidence            87532211      1122233455567778889998 889999999999999987532111100        0000 012


Q ss_pred             cceEEECCC-CCEEEEEcCCCcEEEEECCCC--------c----------eEEEe-ecCC-----------CCCcEEEEC
Q 021648          231 TLEASFSPE-GMFVISGSGDGSVYAWSVRSG--------K----------EVASW-MSFD-----------TEPPVIKWT  279 (309)
Q Consensus       231 ~~~~~~sp~-g~~l~s~s~Dg~i~vwd~~~~--------~----------~~~~~-~~~~-----------~~v~~l~~~  279 (309)
                      .-++..+|. ..+||.|+.|-..++||.+..        +          ++..+ ++|-           ...+-+.|+
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn  282 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN  282 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence            235788995 578899999999999995321        1          12222 1222           113458899


Q ss_pred             CCee-EEEEcc-ceEEEeee
Q 021648          280 PGSL-MFVTGS-SELSFWIP  297 (309)
Q Consensus       280 p~~~-~l~s~~-~d~~~~~~  297 (309)
                      |+|. +|++-+ +-++++..
T Consensus       283 pNGtElLvs~~gEhVYlfdv  302 (758)
T KOG1310|consen  283 PNGTELLVSWGGEHVYLFDV  302 (758)
T ss_pred             CCCcEEEEeeCCeEEEEEee
Confidence            9974 666644 44777754

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.41  E-value=1.1e-12  Score=112.78  Aligned_cols=192  Identities=17%  Similarity=0.217  Sum_probs=141.8

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648           12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL   91 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~   91 (309)
                      ..|..+.|-|..-+|++++.-|.++.-|+.+|+....+......+..++..|-..-+-.+-   ..++|.+|...+.+++
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh---snGtVSlWSP~skePL  286 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH---SNGTVSLWSPNSKEPL  286 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC---CCceEEecCCCCcchH
Confidence            5677889999988999999999999999999999988887777777777777665555543   3789999999999998


Q ss_pred             EEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEEC-CCC-
Q 021648           92 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDA-RKY-  169 (309)
Q Consensus        92 ~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~~~-  169 (309)
                      ..+..|.++|.++++.++|++++|++.|+.++|||++.-.....+..+.......-.+..+++++.+..+.+|.- ... 
T Consensus       287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s  366 (545)
T KOG1272|consen  287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGS  366 (545)
T ss_pred             HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehhhhcCC
Confidence            888899999999999999999999999999999999876544444332221222223556788889999999952 221 


Q ss_pred             --CcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEE
Q 021648          170 --EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV  209 (309)
Q Consensus       170 --~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i  209 (309)
                        ...++......   ..|..+.|.|-...|-.|-..|--.+
T Consensus       367 ~~~~~pYm~H~~~---~~V~~l~FcP~EDvLGIGH~~G~tsi  405 (545)
T KOG1272|consen  367 GHGETPYMNHRCG---GPVEDLRFCPYEDVLGIGHAGGITSI  405 (545)
T ss_pred             CCCCcchhhhccC---cccccceeccHHHeeeccccCCceeE
Confidence              11122222222   36777888887766666655554333

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=4.4e-10  Score=99.12  Aligned_cols=280  Identities=14%  Similarity=0.244  Sum_probs=172.3

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEE-------cCCCCCceeEEEEc
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS-------SKNGWDESLRLLSL   85 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------s~~g~d~~i~~~d~   85 (309)
                      ..+..+++++|+++|-+ .+..++|++..++..+.+....  .+..+-|+|-++++.+-       ..+.....+++|++
T Consensus        36 ~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v  112 (566)
T KOG2315|consen   36 PCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV  112 (566)
T ss_pred             cceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence            35677889988777655 6778999999887544333332  46778888888766421       11122457889999


Q ss_pred             cCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCce-eeeeeeecCceeEEECCC--CcEEEEE---E--
Q 021648           86 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQ--GLVFAVA---F--  157 (309)
Q Consensus        86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~---~--  157 (309)
                      +++.....++.....-+...|+.|..+ +.---.+.+.+++...-+ ....++..+......++.  ...+++-   .  
T Consensus       113 et~~~~s~~q~k~Q~~W~~qfs~dEsl-~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG  191 (566)
T KOG2315|consen  113 ETGVQRSQIQKKMQNGWVPQFSIDESL-AARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG  191 (566)
T ss_pred             ccceehhheehhhhcCcccccccchhh-hhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence            986555555443333378888887643 222335578888765422 122222222222222222  1111111   0  


Q ss_pred             -CCEEEEEECCCC-------------------------------------C-------cCCceEEEeCC--------CCC
Q 021648          158 -GGYIRMFDARKY-------------------------------------E-------KGPFDIFSVGG--------DIS  184 (309)
Q Consensus       158 -~~~i~~~d~~~~-------------------------------------~-------~~~~~~~~~~~--------~~~  184 (309)
                       -..++||...-.                                     +       ...+..+...+        ...
T Consensus       192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G  271 (566)
T KOG2315|consen  192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG  271 (566)
T ss_pred             CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC
Confidence             123444432100                                     0       00111111111        136


Q ss_pred             CCeEEEEccCCCEEE--EEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC---CcEEEEECCC
Q 021648          185 DANVVKFSNDGRLML--LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRS  259 (309)
Q Consensus       185 ~~~~v~~s~dg~~l~--~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D---g~i~vwd~~~  259 (309)
                      +|.+++++|+|+.++  .|-+--++.|||++ +.++..+.     .++-..+-|+|.|++|+-+|-+   |.+-|||+.+
T Consensus       272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n  345 (566)
T KOG2315|consen  272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN  345 (566)
T ss_pred             CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-----CCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence            789999999997654  46678899999975 56665442     2344568899999999999876   7999999999


Q ss_pred             CceEEEeecCCCCCcEEEECCCeeEEEEccc------e--EEEeeecCCCccc
Q 021648          260 GKEVASWMSFDTEPPVIKWTPGSLMFVTGSS------E--LSFWIPDLSKLGA  304 (309)
Q Consensus       260 ~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~------d--~~~~~~~~~~~~~  304 (309)
                      .+++..+..-.  -+-..|+|||++|.++.-      |  .++|.-.++.|-+
T Consensus       346 ~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~  396 (566)
T KOG2315|consen  346 RKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE  396 (566)
T ss_pred             hhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh
Confidence            88888776533  467889999999887663      2  8889888877643

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=3.2e-10  Score=102.58  Aligned_cols=229  Identities=14%  Similarity=0.127  Sum_probs=132.9

Q ss_pred             ecCCCcceEEEEeCCCCCE--E-EEeeCCCc--EEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC-C-CCce
Q 021648            7 FRDYNGRISSMDFHKSSSY--L-VTASDDES--IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-G-WDES   79 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~~~~--l-~t~s~D~~--v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-g-~d~~   79 (309)
                      +......+.+-.|+|||+.  + .+.-.++.  |-+.++.+|+..+... .+.......|+|||+.+++.+.. | .|-.
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di~  258 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKKLLAFISDRYGNPDLF  258 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCCEEEEEECCCCCccee
Confidence            3334455667799999975  2 24444554  4455777765433322 22223457899999999887632 1 2323


Q ss_pred             eEEEEccCC---ceEEEeeecccCEEEEEecCCCCeEEEec-CCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEE
Q 021648           80 LRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  155 (309)
Q Consensus        80 i~~~d~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (309)
                      +..|++..+   +......++.+......|+|||+.|+..+ .+|...+|.+....       .                
T Consensus       259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~-------~----------------  315 (428)
T PRK01029        259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP-------E----------------  315 (428)
T ss_pred             EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc-------c----------------
Confidence            444676652   33333333334456789999999777655 45655555321100       0                


Q ss_pred             EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC---CcEEEEECCCCeEeEEeeecCCCCCccc
Q 021648          156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTL  232 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~  232 (309)
                        ++..+.               +......+....+||||+.|+..+.+   ..|.+||+.+++......    ....+.
T Consensus       316 --g~~~~~---------------lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~----~~~~~~  374 (428)
T PRK01029        316 --GQSPRL---------------LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT----SPENKE  374 (428)
T ss_pred             --ccceEE---------------eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC----CCCCcc
Confidence              000000               00011123456899999998876543   469999998876543211    112345


Q ss_pred             eEEECCCCCEEEEEcC---CCcEEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648          233 EASFSPEGMFVISGSG---DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG  281 (309)
Q Consensus       233 ~~~~sp~g~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~  281 (309)
                      ...|+|||++|+..+.   ...|++||+.+++.. .+....+.+...+|+|-
T Consensus       375 ~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        375 SPSWAIDSLHLVYSAGNSNESELYLISLITKKTR-KIVIGSGEKRFPSWGAF  425 (428)
T ss_pred             ceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCcccCceecCC
Confidence            6789999998875433   357899999876543 33334456677888885

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=1.1e-10  Score=97.81  Aligned_cols=225  Identities=15%  Similarity=0.162  Sum_probs=132.9

Q ss_pred             cCCCcceEEEEeCCCCCEEEEeeC-CCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc
Q 021648            8 RDYNGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   86 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~~~~l~t~s~-D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~   86 (309)
                      .|| ..|+++.|.+||..++|+|. |..++|||++++.++........++..+-|+||+..++++..   |...++|+.+
T Consensus       193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~---davfrlw~e~  268 (445)
T KOG2139|consen  193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC---DAVFRLWQEN  268 (445)
T ss_pred             CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc---cceeeeehhc
Confidence            455 68999999999999999996 779999999999887766444556889999999999988765   8899999765


Q ss_pred             CCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc-eeeeeeeecCceeEEECCCCcEEEEEECCEEEEEE
Q 021648           87 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD  165 (309)
Q Consensus        87 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  165 (309)
                      .......-.--.++|...+|+|.|++|+-+.. |.-+++.+... ++....+.+..                -...-+-|
T Consensus       269 q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~----------------k~~lliaD  331 (445)
T KOG2139|consen  269 QSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSI----------------KRVLLIAD  331 (445)
T ss_pred             ccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccc----------------eeeeeecc
Confidence            43211111123348999999999996544432 22234432211 11000000000                00011112


Q ss_pred             CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC--------cEEEEECCCCeEeEEeeecCCCCCccceEEEC
Q 021648          166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG--------HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  237 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg--------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~s  237 (309)
                      +...... .....   .-....++++.|.|.++++.-..+        .|.+||.+......-....-.......-++|+
T Consensus       332 L~e~ti~-ag~~l---~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~  407 (445)
T KOG2139|consen  332 LQEVTIC-AGQRL---CCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFG  407 (445)
T ss_pred             chhhhhh-cCccc---ccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEee
Confidence            1100000 00000   013467889999999998765433        46778876544333221111111223346777


Q ss_pred             C---CCCEEEEEcCCCcEEEEEC
Q 021648          238 P---EGMFVISGSGDGSVYAWSV  257 (309)
Q Consensus       238 p---~g~~l~s~s~Dg~i~vwd~  257 (309)
                      |   +|++|..+-..|.|.-|++
T Consensus       408 pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  408 PLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             ecccCCcEEEEEeccCceEeeee
Confidence            6   6777777777777777666

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.39  E-value=1.3e-11  Score=115.39  Aligned_cols=197  Identities=16%  Similarity=0.256  Sum_probs=143.0

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecccc----ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY----GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      -|..-.+.-+...++.+..++.+-|||...+.....+.....    ....+.+++..-++++++.   -+.+.+|.....
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv---~~~iivW~~~~d  165 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV---FGEIIVWKPHED  165 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc---cccEEEEecccc
Confidence            344444555667889999999999999987666655544322    1222334444445555543   568999998743


Q ss_pred             ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCC
Q 021648           89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK  168 (309)
Q Consensus        89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  168 (309)
                      +.-..+.||.+.|..+.++.||++++|.|.|+++|+|++++.+...                   +++++...|+|    
T Consensus       166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------------------~~~fgHsaRvw----  222 (967)
T KOG0974|consen  166 NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------------------CTGFGHSARVW----  222 (967)
T ss_pred             CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------------------cccccccceeE----
Confidence            3333689999999999999999999999999999999998765321                   12333344444    


Q ss_pred             CCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcC
Q 021648          169 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG  248 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~  248 (309)
                                         .++|.|+  .+++.+.|-+.++|+. .++.+..+..+  ....++.++..++...++|++.
T Consensus       223 -------------------~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h--~g~~iw~~~~~~~~~~~vT~g~  278 (967)
T KOG0974|consen  223 -------------------ACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEH--SGKGIWKIAVPIGVIIKVTGGN  278 (967)
T ss_pred             -------------------EEEeccc--eeEEeccceEEEEEec-ccceehhhhhh--hhcceeEEEEcCCceEEEeecc
Confidence                               4678887  8899999999999965 35555555432  2356789999999999999999


Q ss_pred             CCcEEEEECCC
Q 021648          249 DGSVYAWSVRS  259 (309)
Q Consensus       249 Dg~i~vwd~~~  259 (309)
                      |+.+++|++..
T Consensus       279 Ds~lk~~~l~~  289 (967)
T KOG0974|consen  279 DSTLKLWDLNG  289 (967)
T ss_pred             Ccchhhhhhhc
Confidence            99999999854

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=7.9e-10  Score=100.74  Aligned_cols=205  Identities=11%  Similarity=0.106  Sum_probs=122.4

Q ss_pred             cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeE
Q 021648           34 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF  113 (309)
Q Consensus        34 ~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l  113 (309)
                      .+.++|.+... .+.+..+...+....|+|+++.+++.+.......|.++|+.+++... +....+......|+|||+.|
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            55666765433 34444455567788999999999887643324578899998876432 22223334567899999977


Q ss_pred             E-EecCCCc--EEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEE
Q 021648          114 I-SGSLDRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK  190 (309)
Q Consensus       114 ~-s~s~Dg~--v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~  190 (309)
                      + +.+.++.  |.++|+++++....                                            ..+.......+
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~l--------------------------------------------t~~~~~~~~p~  312 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRI--------------------------------------------TRHRAIDTEPS  312 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEEC--------------------------------------------ccCCCCccceE
Confidence            6 4455664  44555544321100                                            00011123457


Q ss_pred             EccCCCEEEEEeC-CC--cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC-C--cEEEEECCCCceEE
Q 021648          191 FSNDGRLMLLTTM-EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-G--SVYAWSVRSGKEVA  264 (309)
Q Consensus       191 ~s~dg~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D-g--~i~vwd~~~~~~~~  264 (309)
                      |||||+.++..+. ++  .|+++|+.+++... ....   .......+|+|||++|+..+.+ +  .|.++|+.+++.. 
T Consensus       313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~---g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-  387 (448)
T PRK04792        313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE---GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-  387 (448)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC---CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-
Confidence            9999998876654 33  57777877666433 2111   1122346899999999887654 3  4566788776542 


Q ss_pred             EeecCCCCCcEEEECCCeeEEEEccc
Q 021648          265 SWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       265 ~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      .+... .......|+||++.++..+.
T Consensus       388 ~lt~~-~~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        388 VLTST-RLDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             EccCC-CCCCCceECCCCCEEEEEEe
Confidence            22221 12234579999987766543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.35  E-value=2.6e-12  Score=112.90  Aligned_cols=208  Identities=14%  Similarity=0.289  Sum_probs=140.8

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      ..|.||+..|..+.--.+.+-++++|.|+||++|.+..                     .+           |+      
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~---------------------Eg-----------D~------  770 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKP---------------------EG-----------DE------  770 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEecc---------------------cc-----------Cc------
Confidence            34667888777777666666777888888888887642                     00           00      


Q ss_pred             ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEE
Q 021648           85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF  164 (309)
Q Consensus        85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (309)
                      +.+..+..+++.|+.+|.++.|..+.+.++++  ||-+.+||.--+++....                          .|
T Consensus       771 ~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~--------------------------~d  822 (1034)
T KOG4190|consen  771 IGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQM--------------------------ED  822 (1034)
T ss_pred             cccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhh--------------------------hc
Confidence            11234567888999999999999999888876  999999996444332110                          00


Q ss_pred             ECCCCCcCCceEEEeCCCCCCCeEEE-E-ccCCCEEEEE-eCCCcEEEEECCCCeEeEEeeec--CCCCCccceEEECCC
Q 021648          165 DARKYEKGPFDIFSVGGDISDANVVK-F-SNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVK--PVSRNSTLEASFSPE  239 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~~v~-~-s~dg~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~sp~  239 (309)
                      +.+.               ..+..+. . +-+...+.++ +...+|+++|.+.++...++...  +.....+.+++..|.
T Consensus       823 apk~---------------~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~  887 (1034)
T KOG4190|consen  823 APKE---------------GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADK  887 (1034)
T ss_pred             Cccc---------------CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccC
Confidence            0000               0000111 1 1133444444 67889999999998887777654  444445667899999


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEE
Q 021648          240 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF  294 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~  294 (309)
                      |+++|++-..|+|-+.|.++|+.+..+....+....++ .|..+.++....|..+
T Consensus       888 GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHsl  941 (1034)
T KOG4190|consen  888 GNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSL  941 (1034)
T ss_pred             cchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhccccee
Confidence            99999999999999999999998888877766666666 5666666666555333

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=1.1e-10  Score=109.42  Aligned_cols=191  Identities=16%  Similarity=0.189  Sum_probs=139.7

Q ss_pred             CEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce----eE--EECCCCcEEEEE-ECCEEEEEECCCCCcC
Q 021648          100 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP----AA--AYDDQGLVFAVA-FGGYIRMFDARKYEKG  172 (309)
Q Consensus       100 ~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~-~~~~i~~~d~~~~~~~  172 (309)
                      .|....+.-..+.++.+..+..+.+||...+.....+....+.    ..  ..+....+++++ .-+.|.+|+.. ..++
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~-~dn~  167 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH-EDNK  167 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc-ccCC
Confidence            3444555566778888888999999998766544333222221    11  223344444444 46899999976 2322


Q ss_pred             CceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcE
Q 021648          173 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV  252 (309)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i  252 (309)
                      +.   .+.+|...+..+.+|.||+++++.++|..+++|++.+.+......  -.|..++++++|.|+  .++|+++|-++
T Consensus       168 p~---~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~--fgHsaRvw~~~~~~n--~i~t~gedctc  240 (967)
T KOG0974|consen  168 PI---RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTG--FGHSARVWACCFLPN--RIITVGEDCTC  240 (967)
T ss_pred             cc---eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccc--ccccceeEEEEeccc--eeEEeccceEE
Confidence            22   456788889999999999999999999999999999887765211  246788999999998  99999999999


Q ss_pred             EEEECCCCceEEEeecCC-CCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          253 YAWSVRSGKEVASWMSFD-TEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       253 ~vwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      ++|+. .++.+..+..|. ..+..++..++..+.+|++.|..+-.|++
T Consensus       241 rvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  241 RVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             EEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence            99977 455566777775 46888999999999999999855555544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.34  E-value=1.1e-08  Score=90.30  Aligned_cols=262  Identities=15%  Similarity=0.174  Sum_probs=154.9

Q ss_pred             ceEEEEeCCCCCEEEEeeC----CCcEEEEEcCCC--ce--eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648           13 RISSMDFHKSSSYLVTASD----DESIRLYDVTAA--TC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~----D~~v~iWd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      ..+-++++|++++|-++..    ++.|..|++...  +.  +............+++.+++++++.+.-  .++.+.+++
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany--~~g~v~v~~  115 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY--GGGSVSVFP  115 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET--TTTEEEEEE
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc--cCCeEEEEE
Confidence            3456788999998877766    579999987643  32  2333322233456889999998888742  378999999


Q ss_pred             ccC-CceEEE--eee-----------cccCEEEEEecCCCCeEEEec-CCCcEEEeeCCCce--eee--eeeecC--c-e
Q 021648           85 LHD-NKYLRY--FKG-----------HHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEK--CQG--LLRVQG--R-P  142 (309)
Q Consensus        85 ~~~-~~~~~~--~~~-----------h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~~~~--~~~--~~~~~~--~-~  142 (309)
                      +.. +.....  ...           -.....++.++|++++++... ....|.++++....  ...  .+..+.  . .
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            976 432222  111           124578899999999776652 33478888876554  322  122211  1 2


Q ss_pred             eEEECCCCcEEEEEE--CCEEEEEECCCCCcCCceE-EEeC-----CC-CCCCeEEEEccCCCEEEEE-eCCCcEEEEEC
Q 021648          143 AAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDI-FSVG-----GD-ISDANVVKFSNDGRLMLLT-TMEGHIHVLDS  212 (309)
Q Consensus       143 ~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~-~~~~-----~~-~~~~~~v~~s~dg~~l~~~-~~dg~v~i~d~  212 (309)
                      -..+++++.++.+..  ++.|.++++.... +.+.. ..+.     .. ......+++||||++|.++ -..+.|.+|++
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence            356777777666654  6889999876211 11111 1111     01 1145778999999986654 46789999998


Q ss_pred             C--CCeEeEEeeecCCCCCccceEEECCCCCEEEEEc-CCCcEEEEEC--CCCceEEEee-cCCCCCcEEEE
Q 021648          213 F--RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVYAWSV--RSGKEVASWM-SFDTEPPVIKW  278 (309)
Q Consensus       213 ~--~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s-~Dg~i~vwd~--~~~~~~~~~~-~~~~~v~~l~~  278 (309)
                      .  ++.+...-.. +........++++|+|++|+++. .++.|.+|++  .+|+....-. .--..+.||.|
T Consensus       275 d~~~g~l~~~~~~-~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  275 DPATGTLTLVQTV-PTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             CTTTTTEEEEEEE-EESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             ecCCCceEEEEEE-eCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            3  3443322111 12223456799999999999885 5668999977  4555433221 11234566665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.32  E-value=4.4e-10  Score=99.64  Aligned_cols=189  Identities=17%  Similarity=0.263  Sum_probs=138.2

Q ss_pred             CCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccc---cceeEEEEe-------------------cCCC-EEEEEcCCCC
Q 021648           20 HKSSSYLVTASDDESIRLYDVTAATCLKTINSKK---YGVDLVCFT-------------------SHPT-TVIYSSKNGW   76 (309)
Q Consensus        20 s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~---~~v~~~~~~-------------------~~~~-~~~~~s~~g~   76 (309)
                      .|...++|....||.+||||...++..+.+..-.   ....+..|.                   ..++ -++.+-   .
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt---~   78 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT---P   78 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec---C
Confidence            4556899999999999999999887766553221   112222221                   1111 222222   2


Q ss_pred             CceeEEEEccCCceEEEee--ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEE
Q 021648           77 DESLRLLSLHDNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA  154 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (309)
                      .+.|-+|++..++....+.  +|.+.|+++.++.+-.+|-|++.|+.+.+|+....+.                      
T Consensus        79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~----------------------  136 (541)
T KOG4547|consen   79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI----------------------  136 (541)
T ss_pred             CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee----------------------
Confidence            5789999999998777765  6999999999998888999999999999999765432                      


Q ss_pred             EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          155 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       155 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                            +++|...               ...+.+++++|||..+++++  +.|.+||+.+++.+.+|..   |.+++..+
T Consensus       137 ------~~~~~~~---------------~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg---h~s~v~t~  190 (541)
T KOG4547|consen  137 ------IRIWKEQ---------------KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG---HGSPVRTL  190 (541)
T ss_pred             ------eeeeccC---------------CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC---CCcceEEE
Confidence                  3444322               13467889999999988775  7899999999999998874   56778888


Q ss_pred             EECCC-----CCEEEEE-cCCCcEEEEECCC
Q 021648          235 SFSPE-----GMFVISG-SGDGSVYAWSVRS  259 (309)
Q Consensus       235 ~~sp~-----g~~l~s~-s~Dg~i~vwd~~~  259 (309)
                      +|.-+     |.++++. ..+..+.+|-+..
T Consensus       191 ~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  191 SFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEEeccccccceeeeccccccceeEEEEEc
Confidence            88766     6666665 6677889998865

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=2.1e-09  Score=97.28  Aligned_cols=220  Identities=12%  Similarity=0.113  Sum_probs=121.2

Q ss_pred             cEEEEEcCCCceeeeeeccccceeEEEEecCCCE--EEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCC
Q 021648           34 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD  111 (309)
Q Consensus        34 ~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~  111 (309)
                      .|-+.|.+.+.. +.+.........=.|+||++.  +++.+.......|.+.++.+++..+ +....+......|+|||+
T Consensus       166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence            455556654443 333333333455689999986  3334433224678888998876433 333445556789999998


Q ss_pred             eEEEecC-CC----cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCC
Q 021648          112 CFISGSL-DR----TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA  186 (309)
Q Consensus       112 ~l~s~s~-Dg----~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  186 (309)
                      .|+-.+. +|    .+..|++..+..                         +...++.               .......
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~-------------------------g~~~~lt---------------~~~~~~~  283 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAI-------------------------GKPRRLL---------------NEAFGTQ  283 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCC-------------------------CcceEee---------------cCCCCCc
Confidence            8775542 22    122233221100                         0000000               0011112


Q ss_pred             eEEEEccCCCEEEEEeC-CCcEEEE--ECCC-CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC---CcEEEEECCC
Q 021648          187 NVVKFSNDGRLMLLTTM-EGHIHVL--DSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRS  259 (309)
Q Consensus       187 ~~v~~s~dg~~l~~~~~-dg~v~i~--d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D---g~i~vwd~~~  259 (309)
                      ...++||||+.|+..+. +|...+|  +... +.....+..   ....+....|||||++|+..+.+   ..|++||+.+
T Consensus       284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~---~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK---KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc---CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            34689999998887653 5654444  4432 221222211   12344567899999999877554   3699999988


Q ss_pred             CceEEEeecCCCCCcEEEECCCeeEEEEccc---eEEEeeecC
Q 021648          260 GKEVASWMSFDTEPPVIKWTPGSLMFVTGSS---ELSFWIPDL  299 (309)
Q Consensus       260 ~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~---d~~~~~~~~  299 (309)
                      ++.. .+......+....|+||++.|+....   ...+|.+++
T Consensus       361 g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        361 GRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             CCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            7653 33333345677999999987764322   244554443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.27  E-value=2.8e-10  Score=94.80  Aligned_cols=248  Identities=13%  Similarity=0.215  Sum_probs=163.1

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEE-cCCCceeeeeec-cccceeEEEEecCCCEEEEEcCCCCCce
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD-VTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      ++++.++||.+.|++...-|...-+.+.+.|.++|||- .+.++--..+.. -+.+++...+.+....++.+-.   .++
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~---ngt   91 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD---NGT   91 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe---cce
Confidence            56778899999999999999888899999999999993 233432222221 1334666666666656666544   345


Q ss_pred             eEEEEc----cCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEE
Q 021648           80 LRLLSL----HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  155 (309)
Q Consensus        80 i~~~d~----~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (309)
                      +.-+.+    +.....+....|..+|..+-|+....++++.+.|+.+..-=.+.+....-..+....    .+....+..
T Consensus        92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~----t~~~~d~~~  167 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA----SALQFDALY  167 (404)
T ss_pred             EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccC----CCCceeeEE
Confidence            555543    444566777889999999999988899999999988754334444322111111000    011111112


Q ss_pred             EE----CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCcc
Q 021648          156 AF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  231 (309)
Q Consensus       156 ~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  231 (309)
                      ++    .+.|.+..+..  ...-.+....++...+.+.+..|....+.++..|..|.+||+--.+-+ .++.. .+...+
T Consensus       168 ~fvGd~~gqvt~lr~~~--~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~~el~-gh~~kV  243 (404)
T KOG1409|consen  168 AFVGDHSGQITMLKLEQ--NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-AYELQ-GHNDKV  243 (404)
T ss_pred             EEecccccceEEEEEee--cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-eeeec-cchhhh
Confidence            22    24443333221  112235567788889999999999999999999999999997533222 12221 244566


Q ss_pred             ceEEECCCCCEEEEEcCCCcEEEEECCCC
Q 021648          232 LEASFSPEGMFVISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       232 ~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~  260 (309)
                      ..+..-+--+.+.+++.||.|-+|++...
T Consensus       244 ~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  244 QALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            67777788899999999999999998643

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.27  E-value=2.6e-08  Score=99.15  Aligned_cols=250  Identities=13%  Similarity=0.198  Sum_probs=154.9

Q ss_pred             EEEeCCC-CCEEEEeeCCCcEEEEEcCCCceeeeeec-cc-------------cceeEEEEecCCCEEEEEcCCCCCcee
Q 021648           16 SMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINS-KK-------------YGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus        16 ~i~~s~~-~~~l~t~s~D~~v~iWd~~~~~~~~~~~~-~~-------------~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      .++++++ ++++++-+..+.|++||.. +..+..+.. ..             .....+++.++++.++++..  ..+.|
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt--~n~~I  648 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT--ENHAL  648 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC--CCceE
Confidence            5788874 6678888889999999975 444443332 11             12456788887776666532  35789


Q ss_pred             EEEEccCCceEEEeeec-----------------ccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecCce
Q 021648           81 RLLSLHDNKYLRYFKGH-----------------HDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP  142 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h-----------------~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~  142 (309)
                      +.+|+.++. +.++.+-                 ....+.++++| +++.+++.+.++.|++||..++... .+.     
T Consensus       649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~-----  721 (1057)
T PLN02919        649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS-----  721 (1057)
T ss_pred             EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe-----
Confidence            999987764 4443220                 12346789998 5667788888899999997665321 110     


Q ss_pred             eEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCC-EEEEEeCCCcEEEEECCCCeEeEEe
Q 021648          143 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTY  221 (309)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~dg~v~i~d~~~~~~~~~~  221 (309)
                           .         ++.....+      +..   ...........++++|+|. ++++...++.|++||+.++......
T Consensus       722 -----G---------~G~~~~~~------g~~---~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~  778 (1057)
T PLN02919        722 -----G---------DGYERNLN------GSS---GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA  778 (1057)
T ss_pred             -----c---------CCccccCC------CCc---cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence                 0         11000000      000   0000112346789999997 6667777899999998876532111


Q ss_pred             eecC------------------CCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC--------------
Q 021648          222 NVKP------------------VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF--------------  269 (309)
Q Consensus       222 ~~~~------------------~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~--------------  269 (309)
                      ...+                  ..-.....++++|+|+.+++-+.++.|++||..++... ++.+.              
T Consensus       779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~  857 (1057)
T PLN02919        779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQ  857 (1057)
T ss_pred             ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccc
Confidence            0000                  00112357899999999999999999999999876543 32221              


Q ss_pred             CCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          270 DTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       270 ~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      -..+..++++|+|+++++-+.+..+..+++
T Consensus       858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        858 LSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             cCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            124677999999998888776644444443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.25  E-value=7.2e-10  Score=105.68  Aligned_cols=227  Identities=15%  Similarity=0.214  Sum_probs=150.6

Q ss_pred             EEcCCCceeeeeeccccceeEEEEecCC-CEEEEEcCCCCCceeEEEEccC-----CceE--EEeeecccCEEEEEecCC
Q 021648           38 YDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSLHD-----NKYL--RYFKGHHDRVVSLSLCSS  109 (309)
Q Consensus        38 Wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~s~~g~d~~i~~~d~~~-----~~~~--~~~~~h~~~v~~v~~~~~  109 (309)
                      |.. .|..+..+..|...+..++.++.. ..+++++.   |++||+||...     +...  .++.--..++..+.+++.
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~---DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSD---DGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecC---CceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence            554 477778888887777777777655 67787765   89999999743     1122  223333568999999999


Q ss_pred             CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEE
Q 021648          110 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV  189 (309)
Q Consensus       110 ~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v  189 (309)
                      +..+|.++.||.|++.++.-.........                     .+++-|..+  .+.  +..         .-
T Consensus      1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~---------------------~~ri~n~~~--~g~--vv~---------m~ 1155 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVAT---------------------QVRIPNLKK--DGV--VVS---------MH 1155 (1431)
T ss_pred             CCeEEEEcCCCeEEEEEccccccccceee---------------------eeecccccC--CCc--eEE---------ee
Confidence            99999999999999987653211100000                     011111100  000  000         11


Q ss_pred             EEc-cCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee
Q 021648          190 KFS-NDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM  267 (309)
Q Consensus       190 ~~s-~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~  267 (309)
                      +|. .++ ..++.+...+.|..||.++....-+.+... ..+.+.+++.+|-+.++++|..-|.+-+||++=+.++..+.
T Consensus      1156 a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~-~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1156 AFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL-RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred             cccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-cccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence            111 123 378888889999999998766555444333 34778899999999999999999999999999888888763


Q ss_pred             -cCCCCCcEEEECCCe---eEEEEccc----eEEEeeecCCCccc
Q 021648          268 -SFDTEPPVIKWTPGS---LMFVTGSS----ELSFWIPDLSKLGA  304 (309)
Q Consensus       268 -~~~~~v~~l~~~p~~---~~l~s~~~----d~~~~~~~~~~~~~  304 (309)
                       .+..++..+..+|-.   ...+++++    .+.+|..+.+ .++
T Consensus      1235 ~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g-~~~ 1278 (1431)
T KOG1240|consen 1235 HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG-LRQ 1278 (1431)
T ss_pred             CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC-cce
Confidence             344788888887743   35555554    4888877664 443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.24  E-value=1.3e-09  Score=92.20  Aligned_cols=233  Identities=13%  Similarity=0.179  Sum_probs=153.5

Q ss_pred             ceeEEEEecCCCE-EEEEcCCCCCceeEEEEccCCceEEE------eeecccCEEEEEecCCCCeEEEecCCCcEEEeeC
Q 021648           55 GVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDNKYLRY------FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ  127 (309)
Q Consensus        55 ~v~~~~~~~~~~~-~~~~s~~g~d~~i~~~d~~~~~~~~~------~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~  127 (309)
                      .+..++|..+++. ++.+..  .|..+..++++.......      ...-.++|..+...  +.+|++|-.+|.+.+|..
T Consensus        57 ris~l~~~~d~~tevl~~r~--~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   57 RISSLLFGVDGETEVLNARS--ADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhheeecCCceeEeeccc--cCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence            4566677666553 333221  155666666665544332      33445566666543  347899999999999988


Q ss_pred             CCcee----eeeeee-cCceeEEECC-CCcEEE-EEEC--CEEEEEECCCCCcCCceEEEeCCCC---------CCCeEE
Q 021648          128 RAEKC----QGLLRV-QGRPAAAYDD-QGLVFA-VAFG--GYIRMFDARKYEKGPFDIFSVGGDI---------SDANVV  189 (309)
Q Consensus       128 ~~~~~----~~~~~~-~~~~~~~~~~-~~~~~~-~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~---------~~~~~v  189 (309)
                      +.+..    ...+.. .+...+-..+ ...+++ ++..  +.+++||+...+    +++....-.         -.+..+
T Consensus       133 k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~----qiw~aKNvpnD~L~LrVPvW~tdi  208 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK----QIWSAKNVPNDRLGLRVPVWITDI  208 (412)
T ss_pred             cCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccce----eeeeccCCCCccccceeeeeeccc
Confidence            74331    111111 1111111122 233444 4445  689999986532    223222111         123556


Q ss_pred             EEccC--CCEEEEEeCCCcEEEEECCCCe-EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEE-
Q 021648          190 KFSND--GRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS-  265 (309)
Q Consensus       190 ~~s~d--g~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~-  265 (309)
                      .|-+.  ...|++++--++|++||.+.+. ++..+.   ...+++..+...|+|++|++|-.-|.+..||++.++.... 
T Consensus       209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd---~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~  285 (412)
T KOG3881|consen  209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD---FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG  285 (412)
T ss_pred             eecCCCCCceEEEEecceeEEEecCcccCcceeEec---cccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence            78777  8899999999999999987543 333333   2456788899999999999999999999999999988776 


Q ss_pred             eecCCCCCcEEEECCCeeEEEEccceEEEeeec
Q 021648          266 WMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD  298 (309)
Q Consensus       266 ~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~  298 (309)
                      +.+..+.+.+|--+|+.+++++++-|.++.+-|
T Consensus       286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD  318 (412)
T KOG3881|consen  286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD  318 (412)
T ss_pred             cCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence            888999999999999999999999995444433

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.24  E-value=9.1e-10  Score=97.67  Aligned_cols=183  Identities=11%  Similarity=0.190  Sum_probs=131.1

Q ss_pred             CCCeEEEecCCCcEEEeeCCCceeeeeeeec----Cce-----e--EEE--------------CCCCcEEE-EEECCEEE
Q 021648          109 SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRP-----A--AAY--------------DDQGLVFA-VAFGGYIR  162 (309)
Q Consensus       109 ~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~----~~~-----~--~~~--------------~~~~~~~~-~~~~~~i~  162 (309)
                      ...+||....||.+|+||...++....+...    +..     .  +.+              ..+...++ +...|.|-
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            4568999999999999998877654433211    000     0  001              11122333 33568888


Q ss_pred             EEECCCCCcCCceE-EEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648          163 MFDARKYEKGPFDI-FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  241 (309)
Q Consensus       163 ~~d~~~~~~~~~~~-~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~  241 (309)
                      +|++-..+   +.- +.-..|...++++..+.+-..|-+++.|+++-.|+...+..+..+..   ....+..++.+|||+
T Consensus        84 ~ys~~~g~---it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   84 LYSVAGGE---ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---QKPLVSSLCISPDGK  157 (541)
T ss_pred             EEEecCCe---EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc---CCCccceEEEcCCCC
Confidence            88875432   222 23345667888888888889999999999999999988887776653   334567899999999


Q ss_pred             EEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCC-----eeEEEE-cc--ceEEEeeecC
Q 021648          242 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-----SLMFVT-GS--SELSFWIPDL  299 (309)
Q Consensus       242 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~-----~~~l~s-~~--~d~~~~~~~~  299 (309)
                      .+++||  +.|++||+++++.+.+|++|.++|.+++|.-+     |.++.+ +.  .++.+|..+-
T Consensus       158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999997  56999999999999999999999999999776     555544 33  2477787654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.24  E-value=1.4e-08  Score=84.53  Aligned_cols=273  Identities=13%  Similarity=0.201  Sum_probs=177.6

Q ss_pred             ceEEEEeCCCCCE-EEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648           13 RISSMDFHKSSSY-LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL   91 (309)
Q Consensus        13 ~V~~i~~s~~~~~-l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~   91 (309)
                      .|.-|.|..|.-+ |.....|+.|.+|++...+=...+...+.+...++++|+|..++..+.  .|-.|.+|.+.+.+..
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tse--F~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSE--FDLRITVWSLNTQKGY  127 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeec--ceeEEEEEEeccceeE
Confidence            4666788887765 556667899999999887777788888888999999999987776653  4789999999886643


Q ss_pred             EEeeecccCEEEEEecCCCCeEEEecCC------------------------------------CcEEEeeCCCceeeee
Q 021648           92 RYFKGHHDRVVSLSLCSSKDCFISGSLD------------------------------------RTVLLWDQRAEKCQGL  135 (309)
Q Consensus        92 ~~~~~h~~~v~~v~~~~~~~~l~s~s~D------------------------------------g~v~~Wd~~~~~~~~~  135 (309)
                      . ++--+..+..++|+|||++.+-++..                                    ..+.+||.--.-.+-.
T Consensus       128 ~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a  206 (447)
T KOG4497|consen  128 L-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA  206 (447)
T ss_pred             E-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence            2 22223456889999999877666531                                    1222333100000000


Q ss_pred             e-eecCceeEEECCCCcEEEEE-ECCEEEEEECC------------CCC-------------------------cC----
Q 021648          136 L-RVQGRPAAAYDDQGLVFAVA-FGGYIRMFDAR------------KYE-------------------------KG----  172 (309)
Q Consensus       136 ~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~------------~~~-------------------------~~----  172 (309)
                      . ..-+.....++|.+.+++++ +|+.+|+.+--            ...                         ..    
T Consensus       207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a  286 (447)
T KOG4497|consen  207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA  286 (447)
T ss_pred             eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence            0 00122345677878888876 57777665410            000                         00    


Q ss_pred             --------Cc-------eEEEeC------CCCCCCeEEEEccCCCEEEEEeCC--CcEEEEECCCCeEeEEeeecCCCCC
Q 021648          173 --------PF-------DIFSVG------GDISDANVVKFSNDGRLMLLTTME--GHIHVLDSFRGTLLSTYNVKPVSRN  229 (309)
Q Consensus       173 --------~~-------~~~~~~------~~~~~~~~v~~s~dg~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~~~  229 (309)
                              ++       .+..+.      .....+.-++||+|..++++..+.  ..+-+||++..++-..+.    ...
T Consensus       287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi----Qk~  362 (447)
T KOG4497|consen  287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI----QKH  362 (447)
T ss_pred             CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh----hcc
Confidence                    00       000111      012345668999999999987654  578899987755443322    234


Q ss_pred             ccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEE
Q 021648          230 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELS  293 (309)
Q Consensus       230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~  293 (309)
                      ++....|.|.-..++.+.....++.|...-...+.. +.-.-.|..++|+-+|..++-.++|..
T Consensus       363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence            677788999988888887777899999976554443 233346889999999999999888833

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.23  E-value=2.6e-07  Score=78.04  Aligned_cols=267  Identities=13%  Similarity=0.183  Sum_probs=168.1

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeC---CCcEEEEEcCC--Cceeee--eeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            9 DYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTA--ATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~---D~~v~iWd~~~--~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      .+.+..+-++|+|+++.|-++-.   ++.|..|.++.  |+....  ......+...+++++++.+++++.=  .-+.|.
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY--~~g~v~  114 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANY--HSGSVS  114 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEc--cCceEE
Confidence            45677888999999988877765   47888887763  443221  1111123367899999988887753  257899


Q ss_pred             EEEccC-CceE--EEeeecccC----------EEEEEecCCCCeEEEec--CCCcEEEeeCCCceeeeeeeec-----Cc
Q 021648           82 LLSLHD-NKYL--RYFKGHHDR----------VVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQ-----GR  141 (309)
Q Consensus        82 ~~d~~~-~~~~--~~~~~h~~~----------v~~v~~~~~~~~l~s~s--~Dg~v~~Wd~~~~~~~~~~~~~-----~~  141 (309)
                      ++-+.. |...  ..+..|.+.          +....+.|++++|++..  .| .|.++++..++........     +-
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GP  193 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPGAGP  193 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCCCCc
Confidence            998855 4322  123346655          88899999999988874  45 5678888876654322211     11


Q ss_pred             eeEEECCCCcEEEEEE--CCEEEEEECCCCCcCCceEE-EeC------CCCCCCeEEEEccCCCEEEEEeC-CCcEEEEE
Q 021648          142 PAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIF-SVG------GDISDANVVKFSNDGRLMLLTTM-EGHIHVLD  211 (309)
Q Consensus       142 ~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~-~~~------~~~~~~~~v~~s~dg~~l~~~~~-dg~v~i~d  211 (309)
                      --+++.|.+++..+..  +++|.+|+.... .+.+... .+.      ........+.++|||++|-+..- ...|.+|-
T Consensus       194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~  272 (346)
T COG2706         194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS  272 (346)
T ss_pred             ceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence            2367888888777664  699999987653 1222211 110      01245678899999999866532 33566665


Q ss_pred             CCC-CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC-cEEEEECCC--CceEEEee-cCCCCCcEEEEC
Q 021648          212 SFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVYAWSVRS--GKEVASWM-SFDTEPPVIKWT  279 (309)
Q Consensus       212 ~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg-~i~vwd~~~--~~~~~~~~-~~~~~v~~l~~~  279 (309)
                      +.. +..+......+.+........|+|+|++|+++..|+ .|.+|.+..  |+.-.... .....+.||.|.
T Consensus       273 V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         273 VDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             EcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            432 233443343444444456789999999999998875 788888754  43322222 234456777775

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.17  E-value=1e-07  Score=85.25  Aligned_cols=231  Identities=15%  Similarity=0.129  Sum_probs=138.5

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEE
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  102 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~  102 (309)
                      +..+..++.|+.+..+|..+|+.+...............  .+..++....   ++.+..+|.++|+.+..+........
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~---~g~l~a~d~~tG~~~W~~~~~~~~~~  179 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTN---DGRLTALDAATGERLWTYSRVTPALT  179 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECC---CCeEEEEEcCCCceeeEEccCCCcee
Confidence            456667777888888888888776554432211100111  2344555442   77899999999998777654332211


Q ss_pred             EEE-ecC--CCCeEEEecCCCcEEEeeCCCceeeeeeeecCc-------------eeEEECCCCcEEEEEECCEEEEEEC
Q 021648          103 SLS-LCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------------PAAAYDDQGLVFAVAFGGYIRMFDA  166 (309)
Q Consensus       103 ~v~-~~~--~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~i~~~d~  166 (309)
                      ... -+|  .+..++.+..++.+..+|.++++..........             ..... ..+.++....++.+..+|.
T Consensus       180 ~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~  258 (377)
T TIGR03300       180 LRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDL  258 (377)
T ss_pred             ecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEEC
Confidence            000 011  124677888899999999988876543321100             00111 2456677777899999998


Q ss_pred             CCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648          167 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  246 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~  246 (309)
                      .+.+.    +.....  ....  ....++..+..++.+|.++.+|..+|+.+-......  ........  ..+..++++
T Consensus       259 ~tG~~----~W~~~~--~~~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~--~~~~ssp~--i~g~~l~~~  326 (377)
T TIGR03300       259 RSGRV----LWKRDA--SSYQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELK--YRQLTAPA--VVGGYLVVG  326 (377)
T ss_pred             CCCcE----EEeecc--CCcc--CceEeCCEEEEECCCCeEEEEECCCCcEEEcccccc--CCccccCE--EECCEEEEE
Confidence            65431    222211  1111  122345667777889999999999988764432110  01111111  156799999


Q ss_pred             cCCCcEEEEECCCCceEEEeecCCC
Q 021648          247 SGDGSVYAWSVRSGKEVASWMSFDT  271 (309)
Q Consensus       247 s~Dg~i~vwd~~~~~~~~~~~~~~~  271 (309)
                      +.||.++++|..+++.+..+..+..
T Consensus       327 ~~~G~l~~~d~~tG~~~~~~~~~~~  351 (377)
T TIGR03300       327 DFEGYLHWLSREDGSFVARLKTDGS  351 (377)
T ss_pred             eCCCEEEEEECCCCCEEEEEEcCCC
Confidence            9999999999999999888776554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.17  E-value=2.1e-10  Score=112.82  Aligned_cols=200  Identities=17%  Similarity=0.285  Sum_probs=150.3

Q ss_pred             ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec-cccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648            7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      ++.|-..|.++.=+|...+-+||+.||.|++|.-..+..+..++. .+..|+.+.|+..|+.+-.+.  | |+.+.+|..
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d--~-dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVD--G-DGDLSLWQA 2280 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeec--c-CCceeeccc
Confidence            344556777888889888999999999999999888887777653 336688888988888766553  2 889999998


Q ss_pred             cCCceEEEeeecccCEEEEEecCCCCeEEEec---CCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEE
Q 021648           86 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS---LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR  162 (309)
Q Consensus        86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s---~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (309)
                      . .+.....+.|........|..  ..+++++   .++.+.+||.--+.        .         ..++         
T Consensus      2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~--------~---------~s~v--------- 2331 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP--------M---------NSLV--------- 2331 (2439)
T ss_pred             C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCc--------c---------ccee---------
Confidence            7 455666778888888888876  4566664   46788888842110        0         0011         


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  242 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  242 (309)
                                    .  ..|...++++++-|..+.+++|+-+|.|++||++..++++++..            +. .-.+
T Consensus      2332 --------------~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------------~~-~~~~ 2382 (2439)
T KOG1064|consen 2332 --------------H--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------------LD-TREY 2382 (2439)
T ss_pred             --------------e--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------------hh-hhhe
Confidence                          0  22445678999999999999999999999999988877765531            33 4578


Q ss_pred             EEEEcCCCcEEEEECCCCceEEEee
Q 021648          243 VISGSGDGSVYAWSVRSGKEVASWM  267 (309)
Q Consensus       243 l~s~s~Dg~i~vwd~~~~~~~~~~~  267 (309)
                      +++|+..|.|+||++..-..+.+++
T Consensus      2383 f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2383 FVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             eeccCcccceEEEEccccchhhcCc
Confidence            9999999999999998876676664

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=5.3e-08  Score=87.75  Aligned_cols=194  Identities=7%  Similarity=0.005  Sum_probs=116.9

Q ss_pred             ceEEEEeCCCCCE-EEEeeCC---CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648           13 RISSMDFHKSSSY-LVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus        13 ~V~~i~~s~~~~~-l~t~s~D---~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      .+..-.|+|||+. ++-.+.+   ..|-++|+.+++...... .........|+|+++.++.......+..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6678999999984 6655554   357777988876654433 2233445679999998877654444678889998887


Q ss_pred             ceEEEeeecccCEEEEEecCCCCeEEEecC-CC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEE
Q 021648           89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD  165 (309)
Q Consensus        89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  165 (309)
                      +.. .+..+........|+|||+.|+=.+. .+  .|.+.|+.+++..                            +   
T Consensus       268 ~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~----------------------------r---  315 (419)
T PRK04043        268 TLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE----------------------------Q---  315 (419)
T ss_pred             cEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE----------------------------e---
Confidence            643 34444443345579999986655442 22  2223333222110                            0   


Q ss_pred             CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC---------CcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648          166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d---------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                                 ....+.    ....+||||+.++.....         ..|.+.|+.++.... +...    .......|
T Consensus       316 -----------lt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~----~~~~~p~~  375 (419)
T PRK04043        316 -----------VVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN----GVNQFPRF  375 (419)
T ss_pred             -----------CccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC----CCcCCeEE
Confidence                       000111    013689999988876653         268888887776432 2211    12224689


Q ss_pred             CCCCCEEEEEcCCC---cEEEEECCC
Q 021648          237 SPEGMFVISGSGDG---SVYAWSVRS  259 (309)
Q Consensus       237 sp~g~~l~s~s~Dg---~i~vwd~~~  259 (309)
                      +|||++|+-.+.++   .+.+.++..
T Consensus       376 SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        376 SSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCCCCEEEEEEccCCcEEEEEEecCC
Confidence            99999887765543   466667743

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=6.3e-10  Score=96.61  Aligned_cols=248  Identities=16%  Similarity=0.188  Sum_probs=170.3

Q ss_pred             cCCCcceEEEEeCCC--CCEEEEeeCCCcEEEEEcC-CCcee--eeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            8 RDYNGRISSMDFHKS--SSYLVTASDDESIRLYDVT-AATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~--~~~l~t~s~D~~v~iWd~~-~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      .||...|...+|.|.  .+-+++++.||.||+=.+. ++.+.  ..+..|..+|..++.-|+..+-+.++  |.|+.+.-
T Consensus       182 SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~--geD~~v~~  259 (559)
T KOG1334|consen  182 SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSC--GEDAVVFH  259 (559)
T ss_pred             cccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCccccc--ccccceee
Confidence            579999999999884  4679999999999998765 45443  44667888899999988776555443  44889999


Q ss_pred             EEccCCceEEEe---eeccc---CEEEEEecCC-CCeEEEecCCCcEEEeeCCCceee------eee-----ee---cCc
Q 021648           83 LSLHDNKYLRYF---KGHHD---RVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQ------GLL-----RV---QGR  141 (309)
Q Consensus        83 ~d~~~~~~~~~~---~~h~~---~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~------~~~-----~~---~~~  141 (309)
                      +|+..+.+...+   ..+..   ...+++..|- .+.|++++.|.-++++|.+.-...      ..+     ..   ...
T Consensus       260 ~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~I  339 (559)
T KOG1334|consen  260 IDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNI  339 (559)
T ss_pred             eeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccc
Confidence            998776543222   23333   4567777874 458999999999999997643221      111     00   123


Q ss_pred             eeEEEC-CCCcEEEEEECCEEEEEECCCCCcC----------CceEEEeCCCCC--CCeEEE-EccCCCEEEEEeCCCcE
Q 021648          142 PAAAYD-DQGLVFAVAFGGYIRMFDARKYEKG----------PFDIFSVGGDIS--DANVVK-FSNDGRLMLLTTMEGHI  207 (309)
Q Consensus       142 ~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~----------~~~~~~~~~~~~--~~~~v~-~s~dg~~l~~~~~dg~v  207 (309)
                      +.+.|+ ..+.+++.-.|-.|++|.- .+..+          ++...-..||.+  .|..+- |-|..+++++|+.-|+|
T Consensus       340 Tgl~Ysh~~sElLaSYnDe~IYLF~~-~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhI  418 (559)
T KOG1334|consen  340 TGLVYSHDGSELLASYNDEDIYLFNK-SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHI  418 (559)
T ss_pred             eeEEecCCccceeeeecccceEEecc-ccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceE
Confidence            456777 4556777777888999942 22222          111111334443  233333 57888999999999999


Q ss_pred             EEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 021648          208 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~  261 (309)
                      -||+-.+++.+...+.   -...|.++.=+|---.||+.|-|..|+||.-.+.+
T Consensus       419 FiW~K~t~eii~~Meg---Dr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  419 FIWDKKTGEIIRFMEG---DRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             EEEecchhHHHHHhhc---ccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence            9999888887765442   22345566677888899999999999999985543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.13  E-value=1.3e-08  Score=85.15  Aligned_cols=239  Identities=16%  Similarity=0.242  Sum_probs=151.6

Q ss_pred             ceeEEEEecCCCEEEEEcCCCCCceeEEEEccC-C--c--eEEEeeecc------------cCEEEEEecCCCC--eEEE
Q 021648           55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-N--K--YLRYFKGHH------------DRVVSLSLCSSKD--CFIS  115 (309)
Q Consensus        55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~-~--~--~~~~~~~h~------------~~v~~v~~~~~~~--~l~s  115 (309)
                      -+..+.|...|++++++..   +|.|-++.-+. .  +  ....++.|.            ..|..+.|+++++  .|+.
T Consensus        27 iis~vef~~~Ge~LatGdk---gGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   27 IISAVEFDHYGERLATGDK---GGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             ceeeEEeecccceEeecCC---CCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            3677888899999998865   45677775322 1  1  223344443            3578889998765  6777


Q ss_pred             ecCCCcEEEeeCCCceeee---------------eeeecC-----------------------ceeEEECCCCcEEEEEE
Q 021648          116 GSLDRTVLLWDQRAEKCQG---------------LLRVQG-----------------------RPAAAYDDQGLVFAVAF  157 (309)
Q Consensus       116 ~s~Dg~v~~Wd~~~~~~~~---------------~~~~~~-----------------------~~~~~~~~~~~~~~~~~  157 (309)
                      ...|++|++|-++......               .++++.                       .++.....+...+..+.
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD  183 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD  183 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence            7889999999864322110               011100                       01223334555666677


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCCC-----CCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeE-------Eeeec
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGDI-----SDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLS-------TYNVK  224 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~-------~~~~~  224 (309)
                      |-.|.+|.+.... +.+.+..+.++.     .-+++..|+|.. ..++..+..|+|++-|++...+-.       ..+.+
T Consensus       184 dLRINLWnlei~d-~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  184 DLRINLWNLEIID-QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             ceeeeeccccccC-CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            7899999976533 345555554432     124566788865 677888899999999987432111       11110


Q ss_pred             ------CCCCCccceEEECCCCCEEEEEcCCCcEEEEEC-CCCceEEEeecCC------------CCC---cEEEECCCe
Q 021648          225 ------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV-RSGKEVASWMSFD------------TEP---PVIKWTPGS  282 (309)
Q Consensus       225 ------~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~-~~~~~~~~~~~~~------------~~v---~~l~~~p~~  282 (309)
                            ..-...|..+.|+++|+|+++-.. -++++||+ -..+++.+.+.|.            ..|   ..++|+.++
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~  341 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND  341 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence                  011235678999999999998765 47999999 4566787776663            222   238899999


Q ss_pred             eEEEEccceEEEeeec
Q 021648          283 LMFVTGSSELSFWIPD  298 (309)
Q Consensus       283 ~~l~s~~~d~~~~~~~  298 (309)
                      ..+.||+.--.+.+-+
T Consensus       342 ~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  342 SYVMTGSYNNVFRVFN  357 (433)
T ss_pred             ceEecccccceEEEec
Confidence            9999999764444433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.12  E-value=1.7e-10  Score=67.37  Aligned_cols=38  Identities=26%  Similarity=0.535  Sum_probs=36.7

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD   39 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd   39 (309)
                      |+.++|++|+++|++++|+|++++|+||+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            67899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.12  E-value=8e-10  Score=100.44  Aligned_cols=277  Identities=19%  Similarity=0.306  Sum_probs=176.8

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC-Cceeeeeec-cccceeEEEEecCCCE---EEEEcCCCCCceeEEEEc
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINS-KKYGVDLVCFTSHPTT---VIYSSKNGWDESLRLLSL   85 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~---~~~~s~~g~d~~i~~~d~   85 (309)
                      ++.+.++.++|-|+-+|+++.-|-+ +-|++. +...+-+.. ..-.|..+.+++++..   ++..+    ...-.+|++
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts----~qkaiiwnl   98 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS----NQKAIIWNL   98 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC----cchhhhhhh
Confidence            5678899999999999999876654 446653 333333322 1223566777777653   33333    345668887


Q ss_pred             cCC---ceEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeeeeee---ecCceeEEEC-CCCcEEEEEE
Q 021648           86 HDN---KYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAYD-DQGLVFAVAF  157 (309)
Q Consensus        86 ~~~---~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~  157 (309)
                      ...   ..-..+.||...|+.+-|+|+. ..+++++-|-.+..||+++.+.-....   ....+.+... .++.+++...
T Consensus        99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlassh  178 (1081)
T KOG0309|consen   99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH  178 (1081)
T ss_pred             hcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhcc
Confidence            532   2334567999999999999874 479999999999999998765321110   1122233333 2456777788


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      ++.|++||+|....   ....+.++.+.++.+.|..- -..+.+.++||+|+.||..+....-....  ....+++.-.|
T Consensus       179 g~~i~vwd~r~gs~---pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v--tt~~piw~~r~  253 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGST---PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV--TTNFPIWRGRY  253 (1081)
T ss_pred             CCceEEEeccCCCc---ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec--cccCcceeccc
Confidence            89999999987543   35566667777777777553 34567888999999999876543322221  12245666677


Q ss_pred             CCCCC--EEEEEcCCCcE---------EEEECCC-CceEEEeecCCCCCcEEEECCCe----------eEEEEccce--E
Q 021648          237 SPEGM--FVISGSGDGSV---------YAWSVRS-GKEVASWMSFDTEPPVIKWTPGS----------LMFVTGSSE--L  292 (309)
Q Consensus       237 sp~g~--~l~s~s~Dg~i---------~vwd~~~-~~~~~~~~~~~~~v~~l~~~p~~----------~~l~s~~~d--~  292 (309)
                      -|=|.  ++.---.+..+         ..|++.+ .+++.+|.+|+..|....|...+          -+|++=+.|  +
T Consensus       254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l  333 (1081)
T KOG0309|consen  254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL  333 (1081)
T ss_pred             cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence            77432  22211111122         3344443 35688999999988887775533          389999988  5


Q ss_pred             EEeee
Q 021648          293 SFWIP  297 (309)
Q Consensus       293 ~~~~~  297 (309)
                      ++|-.
T Consensus       334 rlWpI  338 (1081)
T KOG0309|consen  334 RLWPI  338 (1081)
T ss_pred             Eeeec
Confidence            55533

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.10  E-value=2.6e-07  Score=81.10  Aligned_cols=275  Identities=14%  Similarity=0.161  Sum_probs=169.6

Q ss_pred             CcceEEEEeCCCCCEEEEeeC---------------CCcEEEEEcCCCceeeeeeccccc--ee-EEEEecCCCEEEEEc
Q 021648           11 NGRISSMDFHKSSSYLVTASD---------------DESIRLYDVTAATCLKTINSKKYG--VD-LVCFTSHPTTVIYSS   72 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~---------------D~~v~iWd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~s   72 (309)
                      ..-|.-+.|+|.++||.|=+.               ++.+.+||..+|..+..+..-..+  .. .+-|+-+..+++-..
T Consensus        71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv  150 (561)
T COG5354          71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV  150 (561)
T ss_pred             cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence            345778899999999998553               345999999999998888765544  33 567777776655443


Q ss_pred             CCCCCceeEEEEccCCceEEEeeec-ccCEEEEEecCCCC--eEEE-----ecCCCcEEEeeCCCceeeeeeeecCc--e
Q 021648           73 KNGWDESLRLLSLHDNKYLRYFKGH-HDRVVSLSLCSSKD--CFIS-----GSLDRTVLLWDQRAEKCQGLLRVQGR--P  142 (309)
Q Consensus        73 ~~g~d~~i~~~d~~~~~~~~~~~~h-~~~v~~v~~~~~~~--~l~s-----~s~Dg~v~~Wd~~~~~~~~~~~~~~~--~  142 (309)
                          ...+.++++..+-....++.- ...|..-.|+|-++  .|+.     .+.++.+++|.+-.+..+.+..+...  .
T Consensus       151 ----~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~  226 (561)
T COG5354         151 ----GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV  226 (561)
T ss_pred             ----cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence                246888887222111111111 24567777887543  3332     35678888888765554433322111  1


Q ss_pred             eEEECCCCcEEEEE------------ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe--CCCcEE
Q 021648          143 AAAYDDQGLVFAVA------------FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT--MEGHIH  208 (309)
Q Consensus       143 ~~~~~~~~~~~~~~------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~--~dg~v~  208 (309)
                      ....+..+.++.+-            ....+.|++++..   .+.+..  .-..+|..++++|.++.++..+  ++-.+.
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~---~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s  301 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER---SIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVS  301 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc---ccceec--cccccceeeeecccCCceeEEeccccccee
Confidence            12233333322211            0246777776532   222221  2245788999999988776654  678899


Q ss_pred             EEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC---CcEEEEECCCCceEE-EeecCCCCCcEEEECCCeeE
Q 021648          209 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSLM  284 (309)
Q Consensus       209 i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D---g~i~vwd~~~~~~~~-~~~~~~~~v~~l~~~p~~~~  284 (309)
                      ++|++.. +...  ...+..   ..+.|||.+++++.++-|   |.+-+||......+. .+.+-+  -.-+.|+||+++
T Consensus       302 ~~~lr~N-l~~~--~Pe~~r---NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF  373 (561)
T COG5354         302 VFDLRGN-LRFY--FPEQKR---NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQF  373 (561)
T ss_pred             ecccccc-eEEe--cCCccc---ccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceE
Confidence            9998754 4332  222222   346899999999999887   589999998766655 454433  345679999997


Q ss_pred             EEEccc------e--EEEeeecCCCc
Q 021648          285 FVTGSS------E--LSFWIPDLSKL  302 (309)
Q Consensus       285 l~s~~~------d--~~~~~~~~~~~  302 (309)
                      +-++..      |  +++|.....++
T Consensus       374 ~~~~~ts~k~~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         374 YDTDTTSEKLRVDNSIKLWDVYGAKV  399 (561)
T ss_pred             EEecCCCcccccCcceEEEEecCchh
Confidence            755432      3  67777655543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=2e-06  Score=72.73  Aligned_cols=265  Identities=14%  Similarity=0.216  Sum_probs=163.2

Q ss_pred             CCcEEEEEcCC--Cce--eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC--CceEE--EeeecccCEEE
Q 021648           32 DESIRLYDVTA--ATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--NKYLR--YFKGHHDRVVS  103 (309)
Q Consensus        32 D~~v~iWd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~--~~~~~--~~~~h~~~v~~  103 (309)
                      +.-|.+|++++  |+.  ++. -.+....+-++++++.+.++++...|-++.|-.|.+..  |+...  ....-..+-..
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y   93 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY   93 (346)
T ss_pred             CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence            57899998873  222  222 22334467889999998888887666677888887764  44211  11111123377


Q ss_pred             EEecCCCCeEEEecC-CCcEEEeeCCC-ceeeeeeee---cC-----------ceeEEECCCCcEEEEE-E-CCEEEEEE
Q 021648          104 LSLCSSKDCFISGSL-DRTVLLWDQRA-EKCQGLLRV---QG-----------RPAAAYDDQGLVFAVA-F-GGYIRMFD  165 (309)
Q Consensus       104 v~~~~~~~~l~s~s~-Dg~v~~Wd~~~-~~~~~~~~~---~~-----------~~~~~~~~~~~~~~~~-~-~~~i~~~d  165 (309)
                      +++++++++|.++.. -|.|.+.-++. +.+......   .+           .-...+.|++.++.+. . -.+|.+|+
T Consensus        94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~  173 (346)
T COG2706          94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD  173 (346)
T ss_pred             EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence            899999999998875 46888887754 332222111   00           1123456777655554 3 37899999


Q ss_pred             CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEE-EeCCCcEEEEECCC--CeE--eEEeeecC---CCCCccceEEEC
Q 021648          166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFR--GTL--LSTYNVKP---VSRNSTLEASFS  237 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~-~~~dg~v~i~d~~~--~~~--~~~~~~~~---~~~~~~~~~~~s  237 (309)
                      +......+.....+ .....-+-+.|+|+|++.-. .-.+++|-+|....  ++.  +++...-+   ...+...++..+
T Consensus       174 ~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis  252 (346)
T COG2706         174 LDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS  252 (346)
T ss_pred             cccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence            87433323222222 22345678999999998644 55689999998765  322  22221111   112344568899


Q ss_pred             CCCCEEEEEcC-CCcEEEEECCCC-ce---EEEeecCCCCCcEEEECCCeeEEEEccce---EEEeeec
Q 021648          238 PEGMFVISGSG-DGSVYAWSVRSG-KE---VASWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFWIPD  298 (309)
Q Consensus       238 p~g~~l~s~s~-Dg~i~vwd~~~~-~~---~~~~~~~~~~v~~l~~~p~~~~l~s~~~d---~~~~~~~  298 (309)
                      |||+||.++-. ...|-++.+... ..   +...+.+...+....|+|++++|+.+..+   +.++..+
T Consensus       253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            99999999832 237888888542 22   23334555567889999999999998865   6666443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=2.8e-07  Score=83.13  Aligned_cols=193  Identities=11%  Similarity=0.075  Sum_probs=115.8

Q ss_pred             ceeEEEEecCCCE-EEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEE-EecCCC--cEEEeeCCCc
Q 021648           55 GVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDR--TVLLWDQRAE  130 (309)
Q Consensus        55 ~v~~~~~~~~~~~-~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~Dg--~v~~Wd~~~~  130 (309)
                      ....-.|+|+++. +++.+..+-+..|.++|+.+++..... ...+......|+|||+.++ +.+.++  .|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            4567889999986 665554433578999999888755443 3555566778999998654 444343  3333344333


Q ss_pred             eeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC-C--cE
Q 021648          131 KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--HI  207 (309)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d-g--~v  207 (309)
                      .....                                          +  ........-.|||||+.++..+.. +  .|
T Consensus       268 ~~~~L------------------------------------------T--~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~I  303 (419)
T PRK04043        268 TLTQI------------------------------------------T--NYPGIDVNGNFVEDDKRIVFVSDRLGYPNI  303 (419)
T ss_pred             cEEEc------------------------------------------c--cCCCccCccEECCCCCEEEEEECCCCCceE
Confidence            21100                                          0  000001123699999887776543 2  68


Q ss_pred             EEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC---------CcEEEEECCCCceEEEeecCCCCCcEEEE
Q 021648          208 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---------GSVYAWSVRSGKEVASWMSFDTEPPVIKW  278 (309)
Q Consensus       208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D---------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~  278 (309)
                      ++.|+.+++...... ..   .  ....|||||++|+-.+..         ..|.+.|+.+++. ..+... .......|
T Consensus       304 y~~dl~~g~~~rlt~-~g---~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~  375 (419)
T PRK04043        304 FMKKLNSGSVEQVVF-HG---K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRF  375 (419)
T ss_pred             EEEECCCCCeEeCcc-CC---C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEE
Confidence            888887776533211 11   1  124899999999877654         2688889887753 333332 23345889


Q ss_pred             CCCeeEEEEccc---eEEEeeecCC
Q 021648          279 TPGSLMFVTGSS---ELSFWIPDLS  300 (309)
Q Consensus       279 ~p~~~~l~s~~~---d~~~~~~~~~  300 (309)
                      +|||+.++-...   ...++..++.
T Consensus       376 SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        376 SSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             CCCCCEEEEEEccCCcEEEEEEecC
Confidence            999987655443   2446655543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.06  E-value=2.7e-07  Score=82.53  Aligned_cols=225  Identities=17%  Similarity=0.119  Sum_probs=136.6

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEE
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  102 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~  102 (309)
                      +..+..++.++.|.-+|..+|+.+.............+  .++..++.++.   ++.+..+|.++|+.++..... +.+.
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~-~~~~  138 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTE---KGEVIALDAEDGKELWRAKLS-SEVL  138 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcC---CCEEEEEECCCCcEeeeeccC-ceee
Confidence            56788888999999999999998766544332111111  24556666543   778999999999987765422 2232


Q ss_pred             EEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce-------eEEECCCCcEEEEEECCEEEEEECCCCCcCCce
Q 021648          103 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-------AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD  175 (309)
Q Consensus       103 ~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  175 (309)
                      +.... .++.++.++.|+.+..||.++++...........       .... .++.++....++.+..+|.++.+.    
T Consensus       139 ~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~----  212 (377)
T TIGR03300       139 SPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQP----  212 (377)
T ss_pred             cCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCE----
Confidence            21111 2446777778999999999988776554332211       1111 124455555668888888765431    


Q ss_pred             EEEe--CCCC--C---CCeEEEEcc--CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648          176 IFSV--GGDI--S---DANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  246 (309)
Q Consensus       176 ~~~~--~~~~--~---~~~~v~~s~--dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~  246 (309)
                      ....  ....  .   ....+.-+|  .+..+..++.+|.++.||..+|+.+-.....     ..  .....++.+++.+
T Consensus       213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-----~~--~~p~~~~~~vyv~  285 (377)
T TIGR03300       213 LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-----SY--QGPAVDDNRLYVT  285 (377)
T ss_pred             eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC-----Cc--cCceEeCCEEEEE
Confidence            1110  0000  0   000000111  2456667778999999999999876544311     11  1122367788889


Q ss_pred             cCCCcEEEEECCCCceEEEe
Q 021648          247 SGDGSVYAWSVRSGKEVASW  266 (309)
Q Consensus       247 s~Dg~i~vwd~~~~~~~~~~  266 (309)
                      +.||.++.+|..+++.+-..
T Consensus       286 ~~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       286 DADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             CCCCeEEEEECCCCcEEEcc
Confidence            99999999999999877554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=1.5e-07  Score=83.48  Aligned_cols=254  Identities=14%  Similarity=0.231  Sum_probs=152.4

Q ss_pred             ceEEEEeCCCCCEEEEeeC-----------CCcEEEEEcCCCceeeeeec--cccce-eEEEEecCCCEEEEEcCCCCCc
Q 021648           13 RISSMDFHKSSSYLVTASD-----------DESIRLYDVTAATCLKTINS--KKYGV-DLVCFTSHPTTVIYSSKNGWDE   78 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~-----------D~~v~iWd~~~~~~~~~~~~--~~~~v-~~~~~~~~~~~~~~~s~~g~d~   78 (309)
                      .|.-+.|||.-+||+|=|.           -..++|||+.+|...+.+..  .++.. ...-|+.+.++++-...    .
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~----~  326 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG----N  326 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc----c
Confidence            4678999999999999663           15899999999999888776  33333 34668888888876643    4


Q ss_pred             eeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee--------------eeeeeecCc--e
Q 021648           79 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC--------------QGLLRVQGR--P  142 (309)
Q Consensus        79 ~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~--------------~~~~~~~~~--~  142 (309)
                      .|.+|+..+-..+..-.-.-..|....|+|.++.||         +|-.++...              +.+.++...  .
T Consensus       327 sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA---------Ywtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc  397 (698)
T KOG2314|consen  327 SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA---------YWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC  397 (698)
T ss_pred             eEEEEecCceeeecccccCCccccCcccCCCcceEE---------EEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence            688887654221111111234677788999755444         554443321              111111111  1


Q ss_pred             eEEECCCCcEEEEEECC-----------EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC---CcEE
Q 021648          143 AAAYDDQGLVFAVAFGG-----------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIH  208 (309)
Q Consensus       143 ~~~~~~~~~~~~~~~~~-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d---g~v~  208 (309)
                      .+..+.++.+++.-.|.           .+.|+.++..+ -+.....+   ...+...++-|.|..++.-+.+   .++.
T Consensus       398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd-Ipve~vel---ke~vi~FaWEP~gdkF~vi~g~~~k~tvs  473 (698)
T KOG2314|consen  398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-IPVEVVEL---KESVIAFAWEPHGDKFAVISGNTVKNTVS  473 (698)
T ss_pred             EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC-CCceeeec---chheeeeeeccCCCeEEEEEcccccccee
Confidence            12344566666654331           23344443221 12222222   1346677889999887765543   4677


Q ss_pred             EEECCC----CeEeEEeeecCCCCCccceEEECCCCCEEEEE---cCCCcEEEEECCCC--ceEEEeecCCCCCcEEEEC
Q 021648          209 VLDSFR----GTLLSTYNVKPVSRNSTLEASFSPEGMFVISG---SGDGSVYAWSVRSG--KEVASWMSFDTEPPVIKWT  279 (309)
Q Consensus       209 i~d~~~----~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~---s~Dg~i~vwd~~~~--~~~~~~~~~~~~v~~l~~~  279 (309)
                      +|-..+    ..++..+.     ...+..+.|+|.|++++.+   |.-|.+..+|+.-.  +.+.. +.|. .-+.+.|.
T Consensus       474 fY~~e~~~~~~~lVk~~d-----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-~eh~-~at~veWD  546 (698)
T KOG2314|consen  474 FYAVETNIKKPSLVKELD-----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-PEHF-AATEVEWD  546 (698)
T ss_pred             EEEeecCCCchhhhhhhc-----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-cccc-ccccceEC
Confidence            776542    12222222     1234568999999999877   55789999999742  22222 2344 34779999


Q ss_pred             CCeeEEEEccc
Q 021648          280 PGSLMFVTGSS  290 (309)
Q Consensus       280 p~~~~l~s~~~  290 (309)
                      |.|++++++++
T Consensus       547 PtGRYvvT~ss  557 (698)
T KOG2314|consen  547 PTGRYVVTSSS  557 (698)
T ss_pred             CCCCEEEEeee
Confidence            99999999886

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.06  E-value=2.8e-07  Score=91.91  Aligned_cols=223  Identities=14%  Similarity=0.221  Sum_probs=135.9

Q ss_pred             eEEEEeCCCCCEEEEe-eCCCcEEEEEcCCCceeeeeecc-----------------ccceeEEEEecCCCEEEEEcCCC
Q 021648           14 ISSMDFHKSSSYLVTA-SDDESIRLYDVTAATCLKTINSK-----------------KYGVDLVCFTSHPTTVIYSSKNG   75 (309)
Q Consensus        14 V~~i~~s~~~~~l~t~-s~D~~v~iWd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~~s~~g   75 (309)
                      -..|+++++++.|..+ ...+.|+++|..++. +.++.+.                 -.....+++++++..++.+..  
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~--  702 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA--  702 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--
Confidence            4678999988765444 445789999987654 3333210                 012346888886555555432  


Q ss_pred             CCceeEEEEccCCceEEEeee---------------cccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeeec
Q 021648           76 WDESLRLLSLHDNKYLRYFKG---------------HHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ  139 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~~~~~~~---------------h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~  139 (309)
                      .++.|++||..++... .+.+               .......++++|+++ .+++-+.++.|++||++++.... + ..
T Consensus       703 ~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~-~-~g  779 (1057)
T PLN02919        703 GQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL-L-AG  779 (1057)
T ss_pred             CCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE-E-Ee
Confidence            2678999998776532 2221               112456799999987 55666778999999987654211 0 00


Q ss_pred             CceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeE
Q 021648          140 GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS  219 (309)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~  219 (309)
                      +...  + + ....        ...+..    +...    .........++++++|.++++-..+++|++||..++....
T Consensus       780 g~~~--~-~-~~l~--------~fG~~d----G~g~----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t  839 (1057)
T PLN02919        780 GDPT--F-S-DNLF--------KFGDHD----GVGS----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT  839 (1057)
T ss_pred             cccc--c-C-cccc--------cccCCC----Cchh----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence            0000  0 0 0000        000000    0000    0001123578999999999999999999999998776553


Q ss_pred             Eeeec----------CCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 021648          220 TYNVK----------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  262 (309)
Q Consensus       220 ~~~~~----------~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~  262 (309)
                      .....          ...-.....++++|+|+.+++-+.+++|++||+.+++.
T Consensus       840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            32210          00112456789999999999999999999999988764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.03  E-value=3.2e-06  Score=70.96  Aligned_cols=218  Identities=15%  Similarity=0.154  Sum_probs=137.2

Q ss_pred             EEEeCC-CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEe-cCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648           16 SMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT-SHPTTVIYSSKNGWDESLRLLSLHDNKYLRY   93 (309)
Q Consensus        16 ~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~   93 (309)
                      ++.|.+ ++.++.+--..+.|..||..+++... +....  ...+++. ++ ..++.+..    ..+.++|+.+++....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~----~~~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADS----GGIAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEET----TCEEEEETTTTEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEc----CceEEEecCCCcEEEE
Confidence            578888 77788887789999999998765432 22222  4455666 45 45555542    3467779988865443


Q ss_pred             eee-----cccCEEEEEecCCCCeEEEecCC--------CcEEEeeCCCceeeeeee-ecCceeEEECCCCcEEEEE--E
Q 021648           94 FKG-----HHDRVVSLSLCSSKDCFISGSLD--------RTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVA--F  157 (309)
Q Consensus        94 ~~~-----h~~~v~~v~~~~~~~~l~s~s~D--------g~v~~Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~  157 (309)
                      ...     .....+.+++.++|+..++....        |.+..++.. ++...... +..-+..++++++..+...  .
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred             eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc
Confidence            332     34578899999999977776543        557777776 44333222 2233456778887655444  3


Q ss_pred             CCEEEEEECCCCCc--CCce-EEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          158 GGYIRMFDARKYEK--GPFD-IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       158 ~~~i~~~d~~~~~~--~~~~-~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                      .+.|..+++.....  .... ...........-.+++.++|++.++....+.|.++|.. |+++..+...   ...+.++
T Consensus       155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~  230 (246)
T PF08450_consen  155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNC  230 (246)
T ss_dssp             TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEE
T ss_pred             cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEE
Confidence            57888888753221  0111 12222222224578999999999998899999999987 8988877754   2356789


Q ss_pred             EE-CCCCCEEEEE
Q 021648          235 SF-SPEGMFVISG  246 (309)
Q Consensus       235 ~~-sp~g~~l~s~  246 (309)
                      +| .|+.+.|...
T Consensus       231 ~fgg~~~~~L~vT  243 (246)
T PF08450_consen  231 AFGGPDGKTLYVT  243 (246)
T ss_dssp             EEESTTSSEEEEE
T ss_pred             EEECCCCCEEEEE
Confidence            99 5776665544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=6.8e-09  Score=89.58  Aligned_cols=265  Identities=16%  Similarity=0.185  Sum_probs=167.1

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeC-CCcEEEEEcCCCceeeeeeccccceeEEEEecCC--CEEEEEcCCCCCc
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP--TTVIYSSKNGWDE   78 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~-D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~s~~g~d~   78 (309)
                      |+++.|+.|.+.|.+++.+.++.++.|++. |..+|++|+++-..+.-+.....+-.+.++...+  ...++.+.. .++
T Consensus        44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~-~sg  122 (558)
T KOG0882|consen   44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLF-KSG  122 (558)
T ss_pred             eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecc-cCC
Confidence            678889999999999999999999999888 9999999997543332221111111122222222  223333322 267


Q ss_pred             eeEEEEccCCc-eEEEe-eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEE
Q 021648           79 SLRLLSLHDNK-YLRYF-KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA  156 (309)
Q Consensus        79 ~i~~~d~~~~~-~~~~~-~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (309)
                      .+.++|-.... +...+ +-|..+|..+.+++-+..++|....|-|..|..+.. .+..   ...  ..+....      
T Consensus       123 ~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~-~qfP---r~~--l~~~~K~------  190 (558)
T KOG0882|consen  123 KIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP-FQFP---RTN--LNFELKH------  190 (558)
T ss_pred             CcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCc-ccCc---ccc--ccccccc------
Confidence            88888865433 33333 459999999999999999999988899999986531 1000   000  0000000      


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee-------cCC---
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-------KPV---  226 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~-------~~~---  226 (309)
                         .-.+|..             -.......++.|||+|..+.+-+.|.+|++++..+|.++..+.=       .+.   
T Consensus       191 ---eTdLy~f-------------~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y  254 (558)
T KOG0882|consen  191 ---ETDLYGF-------------PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPY  254 (558)
T ss_pred             ---cchhhcc-------------cccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccc
Confidence               0011111             11123456889999999999999999999999988876654310       000   


Q ss_pred             -------------------C-CCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC-----------------
Q 021648          227 -------------------S-RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-----------------  269 (309)
Q Consensus       227 -------------------~-~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-----------------  269 (309)
                                         + ...-..+.|...|++|+-|+-=| |+|.++.+++.++.+-..                 
T Consensus       255 ~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~  333 (558)
T KOG0882|consen  255 GLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKS  333 (558)
T ss_pred             ccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhc
Confidence                               0 01123578999999999998887 999999998776554211                 


Q ss_pred             -C-------CCCcEEEECCCeeEEEEccceEEEee
Q 021648          270 -D-------TEPPVIKWTPGSLMFVTGSSELSFWI  296 (309)
Q Consensus       270 -~-------~~v~~l~~~p~~~~l~s~~~d~~~~~  296 (309)
                       .       +.-+.+.+.+|-.+++++-.--++++
T Consensus       334 ~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfyl  368 (558)
T KOG0882|consen  334 NLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYL  368 (558)
T ss_pred             cchhhhhhhccCcccccCCCCeEEEeeeecceEEE
Confidence             0       11123456666677777776655553

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.01  E-value=3.5e-10  Score=104.66  Aligned_cols=127  Identities=18%  Similarity=0.208  Sum_probs=95.7

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ...++|+.|+...+|++|+-+.+.|+.|+..|.|+++++.+|........|+.+++.+.-+.++...+.++.-+ ..-..
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S-~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS-SPLSA 1170 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc-CchHH
Confidence            44678999999999999999999999999999999999999999999999999999999888998877765321 33677


Q ss_pred             EEEccC-CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee
Q 021648           82 LLSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ  133 (309)
Q Consensus        82 ~~d~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~  133 (309)
                      +|++.+ +...++|.    .-.++.|+.....-+-|..-....+||+.++...
T Consensus      1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred             HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence            899854 44444443    3456777754332222322345678898877543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.00  E-value=1.3e-08  Score=85.15  Aligned_cols=208  Identities=14%  Similarity=0.231  Sum_probs=136.4

Q ss_pred             CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEE-cCCCc-----------------------------------
Q 021648            1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD-VTAAT-----------------------------------   44 (309)
Q Consensus         1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd-~~~~~-----------------------------------   44 (309)
                      |.+++....|.+.|+.+-|+-...++++.+.|+.+ .|- .+.+.                                   
T Consensus       104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~  182 (404)
T KOG1409|consen  104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKL  182 (404)
T ss_pred             cchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEE
Confidence            34567778999999999999888999999998775 343 22221                                   


Q ss_pred             ------eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc-eEEEeeecccCEEEEEecCCCCeEEEec
Q 021648           45 ------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-YLRYFKGHHDRVVSLSLCSSKDCFISGS  117 (309)
Q Consensus        45 ------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s  117 (309)
                            .+.++.+|...+.++++.+....+++++.   |..+.+||+-.++ ....+.+|.+.|..+...+--+.++|++
T Consensus       183 ~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~---d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~  259 (404)
T KOG1409|consen  183 EQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS---DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG  259 (404)
T ss_pred             eecCCceEEEEcCcccceEEEEEcCCCcEEEeccc---cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc
Confidence                  12235566667778888877767776664   8899999987654 3456889999999999888888999999


Q ss_pred             CCCcEEEeeCCCceeeeee-----------e----------------ecC---------ceeEEECCCCcEEEEEECCEE
Q 021648          118 LDRTVLLWDQRAEKCQGLL-----------R----------------VQG---------RPAAAYDDQGLVFAVAFGGYI  161 (309)
Q Consensus       118 ~Dg~v~~Wd~~~~~~~~~~-----------~----------------~~~---------~~~~~~~~~~~~~~~~~~~~i  161 (309)
                      .||.|.+||+...+.+..-           +                +..         .+..+.+....+...+.+-.+
T Consensus       260 edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~v  339 (404)
T KOG1409|consen  260 EDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSV  339 (404)
T ss_pred             CCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEE
Confidence            9999999998643321100           0                000         000111122223334444456


Q ss_pred             EEEECCC-----CCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 021648          162 RMFDARK-----YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  214 (309)
Q Consensus       162 ~~~d~~~-----~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~  214 (309)
                      |+-|...     .++.++.++  +.....+..+.+...-..|+++|.|..|+|||.+.
T Consensus       340 R~~~~c~~~i~~~~~t~LA~p--hei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  340 RVCDSCYPTIKDEERTPLAIP--HEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             EEecccchhhhcCCCCccccc--cccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            6665321     111122221  11224567777777778899999999999999753

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.98  E-value=1.2e-07  Score=83.20  Aligned_cols=243  Identities=13%  Similarity=0.154  Sum_probs=144.6

Q ss_pred             EEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEE
Q 021648           36 RLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS  115 (309)
Q Consensus        36 ~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s  115 (309)
                      .+|...+-..-..+.....++..++++|-|.++++.-.    ..|.+|+-.....+..+  ....|..+.|+|.+++|.|
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~----~~V~~~~g~~~~~l~~~--~~~~V~~~~fSP~~kYL~t   88 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHA----AGVECWGGPSKAKLVRF--RHPDVKYLDFSPNEKYLVT   88 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcchheehhhc----cceEEccccchhheeee--ecCCceecccCcccceeee
Confidence            45554444444455557778899999999998876543    35899987765533333  3457899999999999999


Q ss_pred             ecCCCc---------------EEEeeCCCceeeeeeeecCce-----eEEECCCCcEEEEEECCEEEEEEC-CCCCcCCc
Q 021648          116 GSLDRT---------------VLLWDQRAEKCQGLLRVQGRP-----AAAYDDQGLVFAVAFGGYIRMFDA-RKYEKGPF  174 (309)
Q Consensus       116 ~s~Dg~---------------v~~Wd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~d~-~~~~~~~~  174 (309)
                      -+....               +.+||+.++..+..+.....+     ..-++.+..+.+-..+..++++++ .+....++
T Consensus        89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~  168 (561)
T COG5354          89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPF  168 (561)
T ss_pred             eccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCch
Confidence            886544               899999999877665443322     334455555555556778888884 33333333


Q ss_pred             eEEEeCCCCCCCeEEEEccCC--CEEEE-----EeCCCcEEEEECCCCeEeEEe--------------------------
Q 021648          175 DIFSVGGDISDANVVKFSNDG--RLMLL-----TTMEGHIHVLDSFRGTLLSTY--------------------------  221 (309)
Q Consensus       175 ~~~~~~~~~~~~~~v~~s~dg--~~l~~-----~~~dg~v~i~d~~~~~~~~~~--------------------------  221 (309)
                      ....    ...+....+||.|  ..|+.     .+...++++|.+..+..+.+.                          
T Consensus       169 ~~lr----~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~  244 (561)
T COG5354         169 KNLR----PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH  244 (561)
T ss_pred             hhcc----ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEe
Confidence            2221    1234455555543  22222     223345555544332222110                          


Q ss_pred             -----------------------eecCCCCCccceEEECCCCCEEEEEc--CCCcEEEEECCCCceEEEeecCCCCCcEE
Q 021648          222 -----------------------NVKPVSRNSTLEASFSPEGMFVISGS--GDGSVYAWSVRSGKEVASWMSFDTEPPVI  276 (309)
Q Consensus       222 -----------------------~~~~~~~~~~~~~~~sp~g~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l  276 (309)
                                             ...-....+|.+.+|+|.++.+++.+  .+..+.++|++.. ....+  -.+.-+.+
T Consensus       245 ~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~  321 (561)
T COG5354         245 TKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTI  321 (561)
T ss_pred             eecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccc
Confidence                                   00001135677889999887776655  6788999999764 22222  22344556


Q ss_pred             EECCCeeEEEEccce
Q 021648          277 KWTPGSLMFVTGSSE  291 (309)
Q Consensus       277 ~~~p~~~~l~s~~~d  291 (309)
                      .|+|.+++++.++-|
T Consensus       322 ~fsp~~r~il~agF~  336 (561)
T COG5354         322 FFSPHERYILFAGFD  336 (561)
T ss_pred             cccCcccEEEEecCC
Confidence            677777666665543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.96  E-value=2e-09  Score=62.65  Aligned_cols=38  Identities=34%  Similarity=0.660  Sum_probs=36.3

Q ss_pred             ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEee
Q 021648           89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD  126 (309)
Q Consensus        89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd  126 (309)
                      +++.++.+|.+.|++++|+|++++|+|++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.95  E-value=2.2e-07  Score=76.37  Aligned_cols=241  Identities=16%  Similarity=0.172  Sum_probs=134.3

Q ss_pred             cceEEEEeC---CCCC-EEEEeeCCCcEEEEEcCCCceeeeeec---cccc---eeEEEEecCCCEEEEEcCCCCCceeE
Q 021648           12 GRISSMDFH---KSSS-YLVTASDDESIRLYDVTAATCLKTINS---KKYG---VDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus        12 ~~V~~i~~s---~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~---~~~~---v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ..+..+.|.   .+|. .++-+-.+|.|.++.....+....+++   ....   ...+.|++.+..++++-+   ++.+.
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s---~G~~~  146 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDS---RGSIS  146 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcC---CCcEE
Confidence            345566664   3455 566777788999987654443333332   2222   234567777777776654   44555


Q ss_pred             EEEccCCce--EEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCce-eeee-e--eecCceeEEEC-CCC-cE
Q 021648           82 LLSLHDNKY--LRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEK-CQGL-L--RVQGRPAAAYD-DQG-LV  152 (309)
Q Consensus        82 ~~d~~~~~~--~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~-~~~~-~--~~~~~~~~~~~-~~~-~~  152 (309)
                      .-+......  +...+.|.-+++...|+. +.+.+.|||.|+.+..||+|.++ ++.. .  +..+..+...+ +.+ .+
T Consensus       147 ~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I  226 (339)
T KOG0280|consen  147 GVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYI  226 (339)
T ss_pred             EEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceE
Confidence            444433322  346789999999999986 46789999999999999999433 2221 1  11222222222 333 45


Q ss_pred             EEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC--CEEEEEeCCCcEEEEECCCCeEe--EEeeecCCCC
Q 021648          153 FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLL--STYNVKPVSR  228 (309)
Q Consensus       153 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~~l~~~~~dg~v~i~d~~~~~~~--~~~~~~~~~~  228 (309)
                      +++++|..|++||.|+..++-++..    -...|..++-+|.-  +.++++-.+| .+|.+...+...  ..+..+..|.
T Consensus       227 ~TGsYDe~i~~~DtRnm~kPl~~~~----v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hd  301 (339)
T KOG0280|consen  227 ATGSYDECIRVLDTRNMGKPLFKAK----VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHD  301 (339)
T ss_pred             EEeccccceeeeehhcccCccccCc----cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeecccccc
Confidence            5566899999999998765433221    11456777777743  3333333333 355554432211  1122222333


Q ss_pred             CccceEEECCCCCEEEEEc-CCCcEE-EEECCCC
Q 021648          229 NSTLEASFSPEGMFVISGS-GDGSVY-AWSVRSG  260 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s-~Dg~i~-vwd~~~~  260 (309)
                      .-+..-.|..-..++||++ .|..++ +|-..++
T Consensus       302 Sl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  302 SLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             ceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            3222233433335688864 466644 6655444

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.94  E-value=2.9e-08  Score=84.55  Aligned_cols=165  Identities=16%  Similarity=0.192  Sum_probs=105.4

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCce----eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATC----LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      .+..+..+|.++++|.+-.+...-++++.....    +..... ......+.|......+..+-..|-.+.+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            344556678888888888887766777654322    111111 112234445455555555555565677777776654


Q ss_pred             ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCC
Q 021648           89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK  168 (309)
Q Consensus        89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  168 (309)
                      . ...+-||-..+..|+++||+++++|+..|..||+-.+-....+..+..                              
T Consensus       143 ~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl------------------------------  191 (390)
T KOG3914|consen  143 R-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL------------------------------  191 (390)
T ss_pred             C-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc------------------------------
Confidence            3 345668999999999999999999999999999754322111111111                              


Q ss_pred             CCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648          169 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  222 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~  222 (309)
                                  ||..=|..++.- +++.|++++.|+++++||..+|++++++.
T Consensus       192 ------------GH~eFVS~isl~-~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  192 ------------GHKEFVSTISLT-DNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             ------------ccHhheeeeeec-cCceeeecCCCCcEEEEecccCCcccccc
Confidence                        122223334443 34558899999999999999999887764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=3.9e-07  Score=83.22  Aligned_cols=271  Identities=13%  Similarity=0.147  Sum_probs=166.0

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc---------------eeeeeeccccceeEEEEecCCCEEEEEcCCC
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---------------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   75 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g   75 (309)
                      +....+++|+....++|-||.||.+++-.+.+..               .-+++++|+..|..+.|..+...+- +|.  
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT-tSD--   90 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT-TSD--   90 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccc-ccC--
Confidence            4567899999999999999999999999775421               2357899999999999987665544 432  


Q ss_pred             CCceeEEEEccCCceEEEe--eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee-eeeecCceeEEECCCC-c
Q 021648           76 WDESLRLLSLHDNKYLRYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQGRPAAAYDDQG-L  151 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~-~~~~~~~~~~~~~~~~-~  151 (309)
                      .++-|-+|-+..|.-...+  ...+..|.+++|+.||..+...-.||.|.+=.++.++.-. .++......+..+++. .
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~  170 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQ  170 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHH
Confidence            3788999998766422111  2245678899999999887776677766654433322110 1111111112233332 3


Q ss_pred             EEEEEECCEEEEEECCCCCcCCceE---EEeCCC----CCCCeEEE--------EccCCCEEEEEeCCCcEEEEECCCCe
Q 021648          152 VFAVAFGGYIRMFDARKYEKGPFDI---FSVGGD----ISDANVVK--------FSNDGRLMLLTTMEGHIHVLDSFRGT  216 (309)
Q Consensus       152 ~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~----~~~~~~v~--------~s~dg~~l~~~~~dg~v~i~d~~~~~  216 (309)
                      .+..-..|.+.++|....-..+++.   ....+.    ...+..+.        .-||-..++.+-.+|++.+..-....
T Consensus       171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~  250 (1189)
T KOG2041|consen  171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP  250 (1189)
T ss_pred             HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence            3334446788888743210000000   000000    00111222        24578889999999998886432211


Q ss_pred             EeEEeeecCCCCCccceEEECCCCCEEEEEcCCC---------cEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEE
Q 021648          217 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---------SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT  287 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg---------~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s  287 (309)
                      ....+..    .-.+..+.|+|+|..||.+|.|.         .|..+.. -|+.+.++....+.|+.++|-..|..++.
T Consensus       251 ~Pvv~dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~  325 (1189)
T KOG2041|consen  251 EPVVVDT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAI  325 (1189)
T ss_pred             CCeEEec----ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEE
Confidence            1111111    13455688999999999998864         3444443 57778888888889999999888866655


Q ss_pred             cc
Q 021648          288 GS  289 (309)
Q Consensus       288 ~~  289 (309)
                      +-
T Consensus       326 Av  327 (1189)
T KOG2041|consen  326 AV  327 (1189)
T ss_pred             Ee
Confidence            43

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=8.3e-07  Score=78.83  Aligned_cols=238  Identities=17%  Similarity=0.262  Sum_probs=142.9

Q ss_pred             cceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCC-----------CcE
Q 021648           54 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-----------RTV  122 (309)
Q Consensus        54 ~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D-----------g~v  122 (309)
                      -.-+.+.|+|.|+++++--.    .-|.+|-=++-..+..|. |. .|.-++|||..++|+|-|..           ..+
T Consensus       211 WTetyv~wSP~GTYL~t~Hk----~GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l  284 (698)
T KOG2314|consen  211 WTETYVRWSPKGTYLVTFHK----QGIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL  284 (698)
T ss_pred             ceeeeEEecCCceEEEEEec----cceeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceE
Confidence            34567899999999887643    348888543322233332 43 47889999999999998841           588


Q ss_pred             EEeeCCCceeeeeeeecC--c---eeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCE
Q 021648          123 LLWDQRAEKCQGLLRVQG--R---PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL  197 (309)
Q Consensus       123 ~~Wd~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~  197 (309)
                      +|||++++.....+....  .   +..-.+.++.++|....+.|.+|+..++..-  +..+  ...+.+....+||.+.+
T Consensus       285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~ll--d~Ks--lki~gIr~FswsP~~~l  360 (698)
T KOG2314|consen  285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLL--DKKS--LKISGIRDFSWSPTSNL  360 (698)
T ss_pred             EEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeee--cccc--cCCccccCcccCCCcce
Confidence            999999998776665421  1   2345577888999888899999986543210  0001  12234556667777666


Q ss_pred             EEEEeCC-----CcEEEEECCC----------------------CeEeE----------------Eeeec-----CC---
Q 021648          198 MLLTTME-----GHIHVLDSFR----------------------GTLLS----------------TYNVK-----PV---  226 (309)
Q Consensus       198 l~~~~~d-----g~v~i~d~~~----------------------~~~~~----------------~~~~~-----~~---  226 (309)
                      ||.=+..     -++.+..+.+                      |..+.                .+++.     .+   
T Consensus       361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve  440 (698)
T KOG2314|consen  361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE  440 (698)
T ss_pred             EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence            6532211     0122211111                      11110                00000     00   


Q ss_pred             ---CCCccceEEECCCCCEEEEEcCC---CcEEEEECCC-C---ceEEEeecCCCCCcEEEECCCeeEEEEcc-----ce
Q 021648          227 ---SRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRS-G---KEVASWMSFDTEPPVIKWTPGSLMFVTGS-----SE  291 (309)
Q Consensus       227 ---~~~~~~~~~~sp~g~~l~s~s~D---g~i~vwd~~~-~---~~~~~~~~~~~~v~~l~~~p~~~~l~s~~-----~d  291 (309)
                         ....+...+|-|.|..+++-+..   .++.+|.+.+ .   ..+..+..  ...+.|.|+|.|+.++.+.     .+
T Consensus       441 ~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~  518 (698)
T KOG2314|consen  441 VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGD  518 (698)
T ss_pred             eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccc
Confidence               12345567899999877666443   4788888873 2   22444433  4568899999999876654     46


Q ss_pred             EEEeeecCCCcc
Q 021648          292 LSFWIPDLSKLG  303 (309)
Q Consensus       292 ~~~~~~~~~~~~  303 (309)
                      +.+...+.+.+.
T Consensus       519 l~F~D~~~a~~k  530 (698)
T KOG2314|consen  519 LEFYDTDYADLK  530 (698)
T ss_pred             eEEEecchhhhh
Confidence            777776665543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.87  E-value=4.8e-08  Score=83.20  Aligned_cols=157  Identities=17%  Similarity=0.221  Sum_probs=96.9

Q ss_pred             EEEEecCCCCeEEEecCCCcEEEeeCCCcee----eeeeeecCceeE--EECCCCcEEEEEECC---EEEEEECCCCCcC
Q 021648          102 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKC----QGLLRVQGRPAA--AYDDQGLVFAVAFGG---YIRMFDARKYEKG  172 (309)
Q Consensus       102 ~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~i~~~d~~~~~~~  172 (309)
                      ..+..+++++.|+.+-.++...+.+++....    .....+...+..  .......++.+-.-|   .+.+|....    
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~----  141 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS----  141 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc----
Confidence            3445566777777776666665666543322    112222222211  111222222222223   344443322    


Q ss_pred             CceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcE
Q 021648          173 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV  252 (309)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i  252 (309)
                       ......-||.+-+..|++|||++.++++.-|++|++-.......+..|..  +|..-|..++.-+ ++.|+|||.|+++
T Consensus       142 -~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~isl~~-~~~LlS~sGD~tl  217 (390)
T KOG3914|consen  142 -GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTISLTD-NYLLLSGSGDKTL  217 (390)
T ss_pred             -cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeeeecc-CceeeecCCCCcE
Confidence             11233446778889999999999999999999999976655555555543  3556666777754 5679999999999


Q ss_pred             EEEECCCCceEEEe
Q 021648          253 YAWSVRSGKEVASW  266 (309)
Q Consensus       253 ~vwd~~~~~~~~~~  266 (309)
                      ++||+.+++.+.++
T Consensus       218 r~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  218 RLWDITSGKLLDTC  231 (390)
T ss_pred             EEEecccCCccccc
Confidence            99999999877654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=2.8e-06  Score=75.55  Aligned_cols=246  Identities=9%  Similarity=0.167  Sum_probs=144.3

Q ss_pred             cEEEEEcCCCceeeeeecc---ccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCC
Q 021648           34 SIRLYDVTAATCLKTINSK---KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK  110 (309)
Q Consensus        34 ~v~iWd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~  110 (309)
                      .+-+|.....+...+...+   ..++...+++++|..++++.    +..++|++..+++.+.+....  .+.++.|+|-+
T Consensus        12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~----~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g   85 (566)
T KOG2315|consen   12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD----NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKG   85 (566)
T ss_pred             eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc----CCeEEEEEccCCcEEEEeccc--eeeeeeecccc
Confidence            4566765543333332222   33467888999998888875    678999999888644444433  78999999999


Q ss_pred             CeEEEec-----CCC-----cEEEeeCCCceeeeeeee--cCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEE
Q 021648          111 DCFISGS-----LDR-----TVLLWDQRAEKCQGLLRV--QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFS  178 (309)
Q Consensus       111 ~~l~s~s-----~Dg-----~v~~Wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  178 (309)
                      ++|.|--     .|+     .+++|+.++......+..  +..-...++.+..+.+--..+.+.+|++.+++.. ...+ 
T Consensus        86 ~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~-~~kl-  163 (566)
T KOG2315|consen   86 NYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTI-QHKL-  163 (566)
T ss_pred             cccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccce-eeee-
Confidence            8876532     232     456898887433333321  1111233444555554445677888887654321 1111 


Q ss_pred             eCCCCCCCeEEEEccCC--CEEEE-----EeCCCc---------------------------------------------
Q 021648          179 VGGDISDANVVKFSNDG--RLMLL-----TTMEGH---------------------------------------------  206 (309)
Q Consensus       179 ~~~~~~~~~~v~~s~dg--~~l~~-----~~~dg~---------------------------------------------  206 (309)
                         +...++.+.+||.+  ..+++     .|.-..                                             
T Consensus       164 ---~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdV  240 (566)
T KOG2315|consen  164 ---SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDV  240 (566)
T ss_pred             ---eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEee
Confidence               11223334444431  11111     111122                                             


Q ss_pred             ------------EEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE--cCCCcEEEEECCCCceEEEeecCCCC
Q 021648          207 ------------IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG--SGDGSVYAWSVRSGKEVASWMSFDTE  272 (309)
Q Consensus       207 ------------v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~--s~Dg~i~vwd~~~~~~~~~~~~~~~~  272 (309)
                                  +++++.........+    ...++|.++.|+|+|+.++.+  -.=.++.|+|+ .++.+..+..  ++
T Consensus       241 Dktn~SYYGEq~Lyll~t~g~s~~V~L----~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~e--gp  313 (566)
T KOG2315|consen  241 DKTNASYYGEQTLYLLATQGESVSVPL----LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFPE--GP  313 (566)
T ss_pred             cCCCccccccceEEEEEecCceEEEec----CCCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCCC--CC
Confidence                        333333311111111    135688899999999888776  34568999999 4677776643  67


Q ss_pred             CcEEEECCCeeEEEEccc-----eEEEeee
Q 021648          273 PPVIKWTPGSLMFVTGSS-----ELSFWIP  297 (309)
Q Consensus       273 v~~l~~~p~~~~l~s~~~-----d~~~~~~  297 (309)
                      -+++-|+|.|++++-++-     ++.+|..
T Consensus       314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv  343 (566)
T KOG2315|consen  314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDV  343 (566)
T ss_pred             ccceEECCCCCEEEEeecCCCCCceEEEec
Confidence            789999999999888874     4888854

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.83  E-value=6.8e-08  Score=79.95  Aligned_cols=245  Identities=18%  Similarity=0.318  Sum_probs=148.6

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc-e----eeeeecccc------------ceeEEEEe-cCCCEEEEEc
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-C----LKTINSKKY------------GVDLVCFT-SHPTTVIYSS   72 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~-~----~~~~~~~~~------------~v~~~~~~-~~~~~~~~~s   72 (309)
                      ...|+++.|...|.||+||...|.|-++.-+... |    ...+++|..            .+..+.+. +.+...+..+
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4568999999999999999999999999754321 2    123444432            23334443 3333222222


Q ss_pred             CCCCCceeEEEEccCCc-------------------e-----------------------EEEe-eecccCEEEEEecCC
Q 021648           73 KNGWDESLRLLSLHDNK-------------------Y-----------------------LRYF-KGHHDRVVSLSLCSS  109 (309)
Q Consensus        73 ~~g~d~~i~~~d~~~~~-------------------~-----------------------~~~~-~~h~~~v~~v~~~~~  109 (309)
                      .  -|.+|++|-+....                   +                       .+.+ ..|...++++.|+.|
T Consensus       106 t--NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         106 T--NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             c--CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence            1  28999999875430                   0                       0112 358888999999999


Q ss_pred             CCeEEEecCCCcEEEeeCCCcee-eeee--eecC-------ceeEEECCC--CcEEEEEECCEEEEEECCCCCc--CCce
Q 021648          110 KDCFISGSLDRTVLLWDQRAEKC-QGLL--RVQG-------RPAAAYDDQ--GLVFAVAFGGYIRMFDARKYEK--GPFD  175 (309)
Q Consensus       110 ~~~l~s~s~Dg~v~~Wd~~~~~~-~~~~--~~~~-------~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~--~~~~  175 (309)
                      ..+++|+. |=.|.+|+++-... ...+  +...       ..+..++|.  ..+...++.|.|++-|+|....  .+..
T Consensus       184 ~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         184 KETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             hheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            88888874 77899998763321 1111  1110       122334443  3455566789999999984211  0111


Q ss_pred             EEE----------eCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-CeEeEEeeecCC---------CCCcc---c
Q 021648          176 IFS----------VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPV---------SRNST---L  232 (309)
Q Consensus       176 ~~~----------~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~---------~~~~~---~  232 (309)
                      .+.          ..+..+.+..+.|+++|+++++... -+|++||... ..++.+...+-.         ...++   .
T Consensus       263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF  341 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF  341 (460)
T ss_pred             hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence            111          1112356778899999999987643 4799999865 334444322100         01122   3


Q ss_pred             eEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          233 EASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       233 ~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      .+.||-|.+.+++||.....-++-+.+
T Consensus       342 eisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         342 EISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             EEEecCCcccccccccccceeeecccc
Confidence            588999999999999998888877543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.83  E-value=3e-05  Score=68.08  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=85.1

Q ss_pred             CCCeEEEEccCCCEEEEEeCCC-cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 021648          184 SDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  262 (309)
Q Consensus       184 ~~~~~v~~s~dg~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~  262 (309)
                      ..|....+..+++-++.|..|| .+-|+|..+++.... +   ..-+.+-++..+|||++++.+-.-..|-+.|+.+++.
T Consensus       360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e---~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-E---KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-e---CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            3456666777888888999998 899999988775432 2   1235677899999999999999889999999999875


Q ss_pred             EEEeecCCCCCcEEEECCCeeEEEEccce------EEEeeecC
Q 021648          263 VASWMSFDTEPPVIKWTPGSLMFVTGSSE------LSFWIPDL  299 (309)
Q Consensus       263 ~~~~~~~~~~v~~l~~~p~~~~l~s~~~d------~~~~~~~~  299 (309)
                      -..=..-.+-|+.+.|||+++.+|-+-.+      ++++..+.
T Consensus       436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            33323344678999999999999998765      45554444

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.83  E-value=2.7e-06  Score=69.23  Aligned_cols=229  Identities=14%  Similarity=0.095  Sum_probs=133.7

Q ss_pred             CEEEEeeCCCcEEEEEcCCCcee-eeeeccccceeEEEEecCCC-EEEEEcCCCCCceeEEEEccCCceEEEeeeccc--
Q 021648           24 SYLVTASDDESIRLYDVTAATCL-KTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD--   99 (309)
Q Consensus        24 ~~l~t~s~D~~v~iWd~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~--   99 (309)
                      .+||.||.-|...+|...+.+.. +....+...|+..--..+.. .+..++.   |.++++.+++.+......  |..  
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sn---dht~k~~~~~~~s~~~~~--h~~~~  159 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASN---DHTGKTMVVSGDSNKFAV--HNQNL  159 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccC---CcceeEEEEecCccccee--ecccc
Confidence            58899999999999998764432 22223333232211111111 2233332   889999988765433222  333  


Q ss_pred             CEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeee-eeec----CceeEEECCCCcEEEEE-ECCEEEEEECCCCCcCC
Q 021648          100 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL-LRVQ----GRPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGP  173 (309)
Q Consensus       100 ~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~  173 (309)
                      .+.++++++|++++++.+.-..|..+.+........ +...    ..-...++.....+|++ .||++.+||+|....+-
T Consensus       160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence            388999999999999999999999998754432221 1111    11233445555566655 58999999999865432


Q ss_pred             ceEEEeC-CCCCCCeEEEEccCC--CEEEEEeCCCcEEEEECCCCeEeEEeeecCC-----CCCccceEEECCCCCEEEE
Q 021648          174 FDIFSVG-GDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-----SRNSTLEASFSPEGMFVIS  245 (309)
Q Consensus       174 ~~~~~~~-~~~~~~~~v~~s~dg--~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~sp~g~~l~s  245 (309)
                      ...-.-. .+...++.+.||+-|  .+|...-.-+.+++.|++++...+.....+-     ....+....|+.++.-+.+
T Consensus       240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v  319 (344)
T KOG4532|consen  240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDV  319 (344)
T ss_pred             hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccc
Confidence            2221111 244578899999877  3455555668899999988765544332110     0112344456666655555


Q ss_pred             EcCCCcEEEEECC
Q 021648          246 GSGDGSVYAWSVR  258 (309)
Q Consensus       246 ~s~Dg~i~vwd~~  258 (309)
                      .+++. +.-|++.
T Consensus       320 ~~e~~-~ae~ni~  331 (344)
T KOG4532|consen  320 KNELQ-GAEYNIL  331 (344)
T ss_pred             ccchh-hheeecc
Confidence            55443 4445543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.79  E-value=5.9e-06  Score=68.76  Aligned_cols=219  Identities=20%  Similarity=0.201  Sum_probs=127.6

Q ss_pred             CCCcEEEEEcCCCceeeeeeccccceeEEE-EecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCC
Q 021648           31 DDESIRLYDVTAATCLKTINSKKYGVDLVC-FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS  109 (309)
Q Consensus        31 ~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~  109 (309)
                      .+++|..||..+|+.+.........-..++ ..+++..++++..   ++.+..+|..+|+.+..+.. .+.+..... .+
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~   75 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASG---DGNLYALDAKTGKVLWRFDL-PGPISGAPV-VD   75 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEET---TSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcC---CCEEEEEECCCCCEEEEeec-cccccceee-ec
Confidence            378999999999998877654221111111 2335556666532   78999999999998877764 222111112 23


Q ss_pred             CCeEEEecCCCcEEEeeCCCceeeeee-eecC-----c--eeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCC
Q 021648          110 KDCFISGSLDRTVLLWDQRAEKCQGLL-RVQG-----R--PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG  181 (309)
Q Consensus       110 ~~~l~s~s~Dg~v~~Wd~~~~~~~~~~-~~~~-----~--~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  181 (309)
                      +..++.++.|+.+..+|.++++..... ....     .  ....+ ..+.+++...++.+..+|+++.+.  .-......
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~--~w~~~~~~  152 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKL--LWKYPVGE  152 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEE--EEEEESST
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcE--EEEeecCC
Confidence            445566667889999999999887663 2210     0  11111 134455455588999999876432  00111111


Q ss_pred             CC--------CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEE
Q 021648          182 DI--------SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY  253 (309)
Q Consensus       182 ~~--------~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~  253 (309)
                      ..        .+...-....++ .+.....++.+.-+|..+++.+-  ... ..  ... ....+++..|+.++.|+.+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w--~~~-~~--~~~-~~~~~~~~~l~~~~~~~~l~  225 (238)
T PF13360_consen  153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW--SKP-IS--GIY-SLPSVDGGTLYVTSSDGRLY  225 (238)
T ss_dssp             T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE--EEC-SS---EC-ECEECCCTEEEEEETTTEEE
T ss_pred             CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE--Eec-CC--Ccc-CCceeeCCEEEEEeCCCEEE
Confidence            11        011122223345 66666667754444999998653  221 11  111 12457888888888999999


Q ss_pred             EEECCCCceEE
Q 021648          254 AWSVRSGKEVA  264 (309)
Q Consensus       254 vwd~~~~~~~~  264 (309)
                      .||+.+++.+-
T Consensus       226 ~~d~~tG~~~W  236 (238)
T PF13360_consen  226 ALDLKTGKVVW  236 (238)
T ss_dssp             EEETTTTEEEE
T ss_pred             EEECCCCCEEe
Confidence            99999998653

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=2e-07  Score=80.75  Aligned_cols=255  Identities=15%  Similarity=0.165  Sum_probs=167.7

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      .|.+.|+-+.-. -.+++.++|.||.++.|--..             +..                             -
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~-------------isG-----------------------------v   43 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR-------------ISG-----------------------------V   43 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCC-------------ccc-----------------------------e
Confidence            477788766443 356888999999998885320             000                             0


Q ss_pred             ceEEEeeecccCEEEEEecCCCCeEEEecC-CCcEEEeeCCCceeeeeeee---cCceeEEECCCC--cEEEEE--ECCE
Q 021648           89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRV---QGRPAAAYDDQG--LVFAVA--FGGY  160 (309)
Q Consensus        89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~v~~Wd~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~--~~~~  160 (309)
                      +.++-+..|...|.+++.+.++..+.|.+. |..++++|+++-.....++.   ++...+.+++..  ..++++  .++.
T Consensus        44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~  123 (558)
T KOG0882|consen   44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGK  123 (558)
T ss_pred             eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCC
Confidence            233445668888888888889989999777 99999999876544333332   333344444432  234433  3688


Q ss_pred             EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC------CeEeEEee-----e-cCCCC
Q 021648          161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR------GTLLSTYN-----V-KPVSR  228 (309)
Q Consensus       161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~------~~~~~~~~-----~-~~~~~  228 (309)
                      |.++|-+....+.  .+...-|.+++..+.+++-+..+++....|.|.-|....      .++.-.+.     . .+-..
T Consensus       124 i~VvD~~~d~~q~--~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K  201 (558)
T KOG0882|consen  124 IFVVDGFGDFCQD--GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK  201 (558)
T ss_pred             cEEECCcCCcCcc--ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence            9999866432221  233344678899999999999999999999999998752      11110110     0 01112


Q ss_pred             CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee--------------------------------cCC-CCCcE
Q 021648          229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--------------------------------SFD-TEPPV  275 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~--------------------------------~~~-~~v~~  275 (309)
                      ....++.|+|+|..+.+-+.|..|++++..+++.+..+-                                .|. ..-+.
T Consensus       202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~  281 (558)
T KOG0882|consen  202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN  281 (558)
T ss_pred             cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence            345678999999999999999999999999987543220                                122 22355


Q ss_pred             EEECCCeeEEEEccc-eEEEeeecCCCccccccC
Q 021648          276 IKWTPGSLMFVTGSS-ELSFWIPDLSKLGAYVGR  308 (309)
Q Consensus       276 l~~~p~~~~l~s~~~-d~~~~~~~~~~~~~~~~~  308 (309)
                      +.|...+++|..|+. .+++-..+-..+-++.|+
T Consensus       282 ~~fdes~~flly~t~~gikvin~~tn~v~ri~gk  315 (558)
T KOG0882|consen  282 AVFDESGNFLLYGTILGIKVINLDTNTVVRILGK  315 (558)
T ss_pred             eEEcCCCCEEEeecceeEEEEEeecCeEEEEecc
Confidence            788888999888886 467766666666665554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.78  E-value=2.8e-05  Score=76.66  Aligned_cols=284  Identities=16%  Similarity=0.241  Sum_probs=169.7

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEE----EcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc-
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLY----DVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL-   85 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iW----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~-   85 (309)
                      .+.|.++.+-++...++.+..+|.|.+.    |..+. .+.....-..++.+++|+||.+.++....   ++++-+.+- 
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~---~~~l~~mt~~  150 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTG---EGNLLLMTRD  150 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeC---CCEEEEEecc
Confidence            4678999999999989899999999998    44432 22333344557999999999998877653   334433321 


Q ss_pred             --------------cCCceEE--------Eeee------------------------cccCEEEEEecCCCCeEEEecC-
Q 021648           86 --------------HDNKYLR--------YFKG------------------------HHDRVVSLSLCSSKDCFISGSL-  118 (309)
Q Consensus        86 --------------~~~~~~~--------~~~~------------------------h~~~v~~v~~~~~~~~l~s~s~-  118 (309)
                                    ...+.+.        .|+|                        +.+.-..++|-.||.+||..+- 
T Consensus       151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence                          1111110        0111                        2234456789999999988764 


Q ss_pred             -----CCcEEEeeCCCceeeeeee-ecC-ceeEEECCCCcEEEEEEC----CEEEEEECCCCCcCCceEEEeCCCCCCCe
Q 021648          119 -----DRTVLLWDQRAEKCQGLLR-VQG-RPAAAYDDQGLVFAVAFG----GYIRMFDARKYEKGPFDIFSVGGDISDAN  187 (309)
Q Consensus       119 -----Dg~v~~Wd~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  187 (309)
                           -+.+|+|+- .+....+-. ..+ ....+..|.|.++++..-    ..|.+|+--..+.+.|.+. .......+.
T Consensus       231 ~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~-~~~~~~~v~  308 (928)
T PF04762_consen  231 PETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLR-FDPEEEKVI  308 (928)
T ss_pred             cCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecC-CCCCCceee
Confidence                 268999994 455433221 111 234567788988887752    4566666322222222221 112335678


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC-CCEEEEEcCCCcEEEEE----CCCCc-
Q 021648          188 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWS----VRSGK-  261 (309)
Q Consensus       188 ~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~-g~~l~s~s~Dg~i~vwd----~~~~~-  261 (309)
                      .+.+++|+..|+.-..|. |++|-.....-.-..+........+..+.|+|. ...|.....+|.+..++    +..+. 
T Consensus       309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~  387 (928)
T PF04762_consen  309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPG  387 (928)
T ss_pred             EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCC
Confidence            999999999999976555 999987655422222222112223344899994 56677776667665544    32211 


Q ss_pred             ---------------eE--EEe-------------ecCCCCCcEEEECCCeeEEEEccc--eEEEeeecCCC
Q 021648          262 ---------------EV--ASW-------------MSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLSK  301 (309)
Q Consensus       262 ---------------~~--~~~-------------~~~~~~v~~l~~~p~~~~l~s~~~--d~~~~~~~~~~  301 (309)
                                     .+  ..|             ...+..|.+++|+++...++.-.+  .+.+|.++...
T Consensus       388 ~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~  459 (928)
T PF04762_consen  388 SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN  459 (928)
T ss_pred             CCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence                           00  001             124678899999998854444443  37888876643

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.76  E-value=6.4e-06  Score=68.53  Aligned_cols=217  Identities=21%  Similarity=0.182  Sum_probs=124.5

Q ss_pred             CceeEEEEccCCceEEEeeec--ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCcee-EEECCCCcEE
Q 021648           77 DESLRLLSLHDNKYLRYFKGH--HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYDDQGLVF  153 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h--~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~  153 (309)
                      +++|..+|..+|+.++...--  ....... ..++++.++.++.++.+..||..+++............ ......+.++
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~   80 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY   80 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence            578999999999988877531  1111211 23356677777899999999999998876665533211 1123345566


Q ss_pred             EEEECCEEEEEECCCCCcCCceEEEeCCCCC-CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCc--
Q 021648          154 AVAFGGYIRMFDARKYEKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS--  230 (309)
Q Consensus       154 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~--  230 (309)
                      ....++.+..+|..+.+.. ........... .........++..++.+..++.|+.+|+.+|+.+-.+.........  
T Consensus        81 v~~~~~~l~~~d~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~  159 (238)
T PF13360_consen   81 VGTSDGSLYALDAKTGKVL-WSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI  159 (238)
T ss_dssp             EEETTSEEEEEETTTSCEE-EEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred             cccceeeeEecccCCccee-eeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence            5666788999997665421 11011111111 1112233334888888888999999999999998776542211110  


Q ss_pred             -----cceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          231 -----TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       231 -----~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                           ...-....++ .+..++.++.+..+|+.+++.+-... .. .+..+ ..+++..+..++.+.++..+++
T Consensus       160 ~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~-~~~~~-~~~~~~~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  160 SSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS-GIYSL-PSVDGGTLYVTSSDGRLYALDL  229 (238)
T ss_dssp             EEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS--ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred             eeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC-CccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence                 0111122345 77778778864444999998664333 22 22222 2344444444445555555554

...

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.76  E-value=1e-06  Score=71.65  Aligned_cols=199  Identities=12%  Similarity=0.055  Sum_probs=122.1

Q ss_pred             eeEEEEccCCc--eEEEeeecccCEEEEEecC-----CCCeEEEecCCCcEEEeeCCCceeeeeeeecCcee----E-EE
Q 021648           79 SLRLLSLHDNK--YLRYFKGHHDRVVSLSLCS-----SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA----A-AY  146 (309)
Q Consensus        79 ~i~~~d~~~~~--~~~~~~~h~~~v~~v~~~~-----~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~----~-~~  146 (309)
                      .+-+|++.++.  .+..+       ..+.|.|     .-.+|+.|+.-|...+|...++.....+.-.....    . ..
T Consensus        53 sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~c  125 (344)
T KOG4532|consen   53 SVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYC  125 (344)
T ss_pred             eeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhc
Confidence            46677765543  23333       2344444     23478999999999999987665432221111110    0 01


Q ss_pred             CCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-CeEeEEeeecC
Q 021648          147 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKP  225 (309)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~  225 (309)
                      .....++-+..|.+++++++.....+. .   +....-.++.+++|+|++++++-+....|-.|.+.. ++.+......+
T Consensus       126 d~~~~~~i~sndht~k~~~~~~~s~~~-~---~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~  201 (344)
T KOG4532|consen  126 DLKFPLNIASNDHTGKTMVVSGDSNKF-A---VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP  201 (344)
T ss_pred             ccccceeeccCCcceeEEEEecCcccc-e---eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc
Confidence            112234555667788888765432211 1   111112378899999999999999999999888754 33333322222


Q ss_pred             CCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc-eE----EEeecCCCCCcEEEECCCe---eEEEEcc
Q 021648          226 VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK-EV----ASWMSFDTEPPVIKWTPGS---LMFVTGS  289 (309)
Q Consensus       226 ~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~-~~----~~~~~~~~~v~~l~~~p~~---~~l~s~~  289 (309)
                      ... .-....|+.....+|++..||++.|||++.-. +.    .+-+.|++.+..+.|+|.|   .+|.+-+
T Consensus       202 t~D-~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh  272 (344)
T KOG4532|consen  202 TSD-HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH  272 (344)
T ss_pred             cCC-CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC
Confidence            221 12357899999999999999999999998632 22    2335789999999999855   3555533

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.76  E-value=1.4e-05  Score=70.03  Aligned_cols=125  Identities=10%  Similarity=0.116  Sum_probs=99.2

Q ss_pred             cCCCcceEEEEeCCCCCEEEEeeCCC-cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc
Q 021648            8 RDYNGRISSMDFHKSSSYLVTASDDE-SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   86 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~~~~l~t~s~D~-~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~   86 (309)
                      .+|.+.|.-..+..+++-++-|-.|+ .+-|+|.++++..+... .-..+..+..+++|++++.+..   ..++-+.|+.
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~-~lg~I~av~vs~dGK~~vvaNd---r~el~vidid  431 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK-DLGNIEAVKVSPDGKKVVVAND---RFELWVIDID  431 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-CccceEEEEEcCCCcEEEEEcC---ceEEEEEEec
Confidence            36888899999998888999999999 99999999877554333 3335788899999998888753   3466677899


Q ss_pred             CCceEEEeeecccCEEEEEecCCCCeEEEecCCC----cEEEeeCCCceeeeee
Q 021648           87 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR----TVLLWDQRAEKCQGLL  136 (309)
Q Consensus        87 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg----~v~~Wd~~~~~~~~~~  136 (309)
                      +++....=+...+-|+...|+|+++++|-+=.+|    .|+++|+..++.....
T Consensus       432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence            9987766666778899999999999998776665    7899999887765443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.75  E-value=2.6e-05  Score=64.33  Aligned_cols=168  Identities=14%  Similarity=0.206  Sum_probs=104.2

Q ss_pred             EEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec----C-----ceeEEECC-------CCcEEEEEECCEEEEE
Q 021648          101 VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----G-----RPAAAYDD-------QGLVFAVAFGGYIRMF  164 (309)
Q Consensus       101 v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~----~-----~~~~~~~~-------~~~~~~~~~~~~i~~~  164 (309)
                      =+-++|+||+..||-+..-|+|+++|+....+. .+...    +     ...+.+.+       .-.++...+.|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            367899999999999999999999998654322 22111    0     01111211       1246666677777777


Q ss_pred             ECCCCCcCCc---eEEEeCCC-CCCCeEEEEccCCCEEEEEeCCC----c-------EEEEECCCCeEeEE---------
Q 021648          165 DARKYEKGPF---DIFSVGGD-ISDANVVKFSNDGRLMLLTTMEG----H-------IHVLDSFRGTLLST---------  220 (309)
Q Consensus       165 d~~~~~~~~~---~~~~~~~~-~~~~~~v~~s~dg~~l~~~~~dg----~-------v~i~d~~~~~~~~~---------  220 (309)
                      -+...+...+   ..+.+..+ ...++++.++|..++|+.||...    .       +.-|.+-++.+...         
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~  204 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI  204 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence            6533222222   23333333 45789999999999988776421    1       33343322211100         


Q ss_pred             --------------e---eecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC
Q 021648          221 --------------Y---NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF  269 (309)
Q Consensus       221 --------------~---~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~  269 (309)
                                    +   .........+..+..||||+.||+...+|.|.+|++.+-+...++..+
T Consensus       205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence                          0   001122345778999999999999999999999999998777766543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.74  E-value=5.3e-07  Score=84.33  Aligned_cols=183  Identities=15%  Similarity=0.225  Sum_probs=131.2

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEE
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  102 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~  102 (309)
                      +..++-|+.-..+..+|+.+.+..+...-...++..++  .+++.+.++..   .|+|.+-|.++-+.++++..|.+.|.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t---~G~V~LrD~~s~~~iht~~aHs~siS  221 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDT---RGTVFLRDPNSFETIHTFDAHSGSIS  221 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecc---cceEEeecCCcCceeeeeecccccee
Confidence            45666777777888889988877777666554555544  34555665543   67999999999999999999999998


Q ss_pred             EEEecCCCCeEEEecC---------CCcEEEeeCCCceeeeeeeecCceeE-EEC--CCCcEEEEEECCEEEEEECCCCC
Q 021648          103 SLSLCSSKDCFISGSL---------DRTVLLWDQRAEKCQGLLRVQGRPAA-AYD--DQGLVFAVAFGGYIRMFDARKYE  170 (309)
Q Consensus       103 ~v~~~~~~~~l~s~s~---------Dg~v~~Wd~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~i~~~d~~~~~  170 (309)
                      +.+.  .|+.|+|+|.         |.-|++||+|+-+....+.++..+.. -+.  -...++.++..|...+-|.....
T Consensus       222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls  299 (1118)
T KOG1275|consen  222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS  299 (1118)
T ss_pred             eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence            7654  5789999984         66789999998776655554432221 122  23344445556777777744444


Q ss_pred             cCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEEC
Q 021648          171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS  212 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~  212 (309)
                      +++..++.+....+.+..+++|++|..++.+..+|+|++|-.
T Consensus       300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            455555555555566889999999999999999999999973

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.73  E-value=9.3e-05  Score=62.05  Aligned_cols=217  Identities=13%  Similarity=0.176  Sum_probs=128.6

Q ss_pred             EEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEec-CCCCeEEEecCCCcEEEeeCCCceeeeee
Q 021648           58 LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQRAEKCQGLL  136 (309)
Q Consensus        58 ~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~  136 (309)
                      ..+|.+....++++...  .+.|..|+..+++... +...  ...++.+. ++++.+++ ..++. .++|+.+++.....
T Consensus         4 gp~~d~~~g~l~~~D~~--~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~g~l~v~-~~~~~-~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIP--GGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPDGRLYVA-DSGGI-AVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETT--TTEEEEEETTTTEEEE-EESS--SEEEEEEECTTSEEEEE-ETTCE-EEEETTTTEEEEEE
T ss_pred             ceEEECCCCEEEEEEcC--CCEEEEEECCCCeEEE-EecC--CCceEEEEccCCEEEEE-EcCce-EEEecCCCcEEEEe
Confidence            34555544555555432  5689999988876432 2212  26777777 66554444 44444 45598887655444


Q ss_pred             eec--C-----ceeEEECCCCcEEEEEEC---------CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEE-E
Q 021648          137 RVQ--G-----RPAAAYDDQGLVFAVAFG---------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-L  199 (309)
Q Consensus       137 ~~~--~-----~~~~~~~~~~~~~~~~~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l-~  199 (309)
                      ...  .     -+....++++.++.+...         +.+..++.. .+   .....  ......+.++|+||++.| +
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~--~~~~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVA--DGLGFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEE--EEESSEEEEEEETTSSEEEE
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---EEEEe--cCcccccceEECCcchheee
Confidence            331  1     123566777776665542         346666654 11   11111  112345789999999865 5


Q ss_pred             EEeCCCcEEEEECCCC-e-Ee--EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcE
Q 021648          200 LTTMEGHIHVLDSFRG-T-LL--STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV  275 (309)
Q Consensus       200 ~~~~dg~v~i~d~~~~-~-~~--~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~  275 (309)
                      +-+..+.|..++.... . ..  ..+...+...+..-.+++.++|+.+++.-..+.|.++|.. ++.+..+..-...+++
T Consensus       151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~  229 (246)
T PF08450_consen  151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTN  229 (246)
T ss_dssp             EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEE
T ss_pred             cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEE
Confidence            6778899999998532 2 21  1121111111234568999999998888888999999997 8877766543358899


Q ss_pred             EEE-CCC-eeEEEEc
Q 021648          276 IKW-TPG-SLMFVTG  288 (309)
Q Consensus       276 l~~-~p~-~~~l~s~  288 (309)
                      ++| -|+ ..+++|.
T Consensus       230 ~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  230 CAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEESTTSSEEEEEE
T ss_pred             EEEECCCCCEEEEEe
Confidence            999 455 4566664

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.71  E-value=9.6e-06  Score=66.79  Aligned_cols=189  Identities=14%  Similarity=0.217  Sum_probs=103.3

Q ss_pred             EEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccc-------cceeEEEEecCC---C---EEEEEcCCCCCceeE
Q 021648           15 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-------YGVDLVCFTSHP---T---TVIYSSKNGWDESLR   81 (309)
Q Consensus        15 ~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~-------~~v~~~~~~~~~---~---~~~~~s~~g~d~~i~   81 (309)
                      .-++||||+.+||-+..-|+|+++|+.. ..+..+....       ..|..+.|....   +   .+++.   .+++.++
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi---~Y~G~L~  122 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI---NYRGQLR  122 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEE---eccceee
Confidence            4689999999999999999999999874 4444544322       234445554322   1   22222   1355666


Q ss_pred             EEEccCC---c--eEEEe--ee-cccCEEEEEecCCCCeEEEecCCCc-----------EEEeeCCCceeeeeeeecCce
Q 021648           82 LLSLHDN---K--YLRYF--KG-HHDRVVSLSLCSSKDCFISGSLDRT-----------VLLWDQRAEKCQGLLRVQGRP  142 (309)
Q Consensus        82 ~~d~~~~---~--~~~~~--~~-h~~~v~~v~~~~~~~~l~s~s~Dg~-----------v~~Wd~~~~~~~~~~~~~~~~  142 (309)
                      -|-+..+   +  ...++  .. +...|.++.++|..+.|+.||....           +..|-+-++.+.-      +.
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyy------k~  196 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYY------KQ  196 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcE------EE
Confidence            6654221   1  22233  22 4678999999999887776664322           1112111110000      00


Q ss_pred             eEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEe-CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEe
Q 021648          143 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV-GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  221 (309)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~  221 (309)
                      ...+ +++........+..++.        .+..+.. ......+..+..||||+.||+...+|.+.+|++.+-.+....
T Consensus       197 v~~~-~~~~~~~~~~~~~~~~~--------~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  197 VTSS-EDDITASSKRRGLLRIP--------SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             cccc-Cccccccccccceeecc--------ceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            0000 00000000011111111        1112221 123456788999999999999999999999999776666554


Q ss_pred             e
Q 021648          222 N  222 (309)
Q Consensus       222 ~  222 (309)
                      .
T Consensus       268 ~  268 (282)
T PF15492_consen  268 K  268 (282)
T ss_pred             c
Confidence            4

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.70  E-value=1.3e-07  Score=93.80  Aligned_cols=186  Identities=19%  Similarity=0.252  Sum_probs=122.4

Q ss_pred             eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc---eeEEECCCCcEEEE-EECCEEEEEECCCCC
Q 021648           95 KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVFAV-AFGGYIRMFDARKYE  170 (309)
Q Consensus        95 ~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~  170 (309)
                      +.|-..|+.+.-+|..-+-+||+.||.+++|.-..++.+-..+..+.   ....+...|.-+.. ..||.+.+|....  
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-- 2282 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--
Confidence            33556778777788777889999999999998766666555544332   12344455554444 4689999998752  


Q ss_pred             cCCceEEEeCCCCCCCeEEEEccCCCEEEEEe---CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEc
Q 021648          171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  247 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s  247 (309)
                         .....-..|......+.|=.  ..+++++   .++.+.+||..........  +..|...+..+++-|..+.++|||
T Consensus      2283 ---k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v--~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2283 ---KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV--HTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred             ---cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee--eeecCCCceEEEEcCcceEEEecC
Confidence               22333333333344444433  4555543   4678999996543222111  124556678899999999999999


Q ss_pred             CCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          248 GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       248 ~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      .+|.|++||++..+...++..         ++ ....|++|++...+-+|++
T Consensus      2356 r~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             CcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEc
Confidence            999999999987666655543         45 6678999998644444433

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.69  E-value=9.9e-07  Score=72.56  Aligned_cols=116  Identities=21%  Similarity=0.250  Sum_probs=88.3

Q ss_pred             EEEEeCCCCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc-CCceE
Q 021648           15 SSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYL   91 (309)
Q Consensus        15 ~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~-~~~~~   91 (309)
                      -++.|++.+..++++-.+|.+-+-+...+.  ..++++.|++....+.|+.....+++.  +|-|+.+.-||+. .++.+
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvyt--GgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYT--GGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEe--cCCCceEEEEEecCCccee
Confidence            367788989899999999999854444333  345889999999999998755555544  2448999999998 44555


Q ss_pred             EE-eeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCC-Ccee
Q 021648           92 RY-FKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQR-AEKC  132 (309)
Q Consensus        92 ~~-~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~-~~~~  132 (309)
                      .. .+-|+..|.++.-+| .+.+++||+.|-.|++||.| .+++
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP  246 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP  246 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence            44 567888999988775 57799999999999999988 3443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.69  E-value=5.6e-05  Score=68.04  Aligned_cols=255  Identities=11%  Similarity=0.058  Sum_probs=142.5

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEE
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  102 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~  102 (309)
                      +..+..++.++.+.-+|.++|+.+............-..  .+..++....   ++.+..+|.++|+.++.+........
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~~~~~~  194 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTS---NGMLQALNESDGAVKWTVNLDVPSLT  194 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECC---CCEEEEEEccCCCEeeeecCCCCccc
Confidence            345666778999999999999988765543211111111  2334555442   67899999999998887753211100


Q ss_pred             E-EEecC--CCCeEEEecCCCcEEEeeCCCceeeeeeeecCc-------------eeEEECCCCcEEEEEECCEEEEEEC
Q 021648          103 S-LSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------------PAAAYDDQGLVFAVAFGGYIRMFDA  166 (309)
Q Consensus       103 ~-v~~~~--~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~i~~~d~  166 (309)
                      . ..-+|  .+..++.++.++.+...|.++++..........             ..... .++.++.++.++.+..+|.
T Consensus       195 ~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~~g~l~ald~  273 (394)
T PRK11138        195 LRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALAYNGNLVALDL  273 (394)
T ss_pred             ccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEEcCCeEEEEEC
Confidence            0 00011  123566677789998888888765543322110             00011 2455666677888888887


Q ss_pred             CCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648          167 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  246 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~  246 (309)
                      .+.+.    .....  .......  ..++..+...+.+|.++.+|..+|+.+=.....  ..........  .+.+|+.+
T Consensus       274 ~tG~~----~W~~~--~~~~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~sp~v--~~g~l~v~  341 (394)
T PRK11138        274 RSGQI----VWKRE--YGSVNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LHRLLTAPVL--YNGYLVVG  341 (394)
T ss_pred             CCCCE----EEeec--CCCccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEccccc--CCCcccCCEE--ECCEEEEE
Confidence            65432    11111  0111111  124556667778999999999888764322110  0010011111  35678889


Q ss_pred             cCCCcEEEEECCCCceEEEeecCCCCCcE-EEECCCeeEEEEccceEEEeee
Q 021648          247 SGDGSVYAWSVRSGKEVASWMSFDTEPPV-IKWTPGSLMFVTGSSELSFWIP  297 (309)
Q Consensus       247 s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~-l~~~p~~~~l~s~~~d~~~~~~  297 (309)
                      +.||.+++.|..+++.+.........+.+ ..+ .+++ +..++.+.+++..
T Consensus       342 ~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~-l~v~t~~G~l~~~  391 (394)
T PRK11138        342 DSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDK-LLIQARDGTVYAI  391 (394)
T ss_pred             eCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCE-EEEEeCCceEEEE
Confidence            99999999999999987766443322221 112 2344 4444556555543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.66  E-value=2.6e-07  Score=77.49  Aligned_cols=166  Identities=19%  Similarity=0.158  Sum_probs=106.8

Q ss_pred             EEecCCCcEEEeeCCCceeeeeeeecCceeEEEC-CCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEc
Q 021648          114 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS  192 (309)
Q Consensus       114 ~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s  192 (309)
                      ++.+.+..+.+-|.+++.......-...-..-|. .+..++.+...|.|..+|+|...++.......--|.+.+.++..-
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L  307 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL  307 (425)
T ss_pred             ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence            5556677788888877754433211111111122 245677778899999999987644432221111244556665544


Q ss_pred             c-CCCEEEEEeCCCcEEEEECCCCeE---eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeec
Q 021648          193 N-DGRLMLLTTMEGHIHVLDSFRGTL---LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS  268 (309)
Q Consensus       193 ~-dg~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~  268 (309)
                      . ++.+|++.+++|+|.+||++.-+.   +..++.|.... .-.-+-..|....++++|.|...|||.++.+..+.+++-
T Consensus       308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~-a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS-AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             ccccceEeeccCcCceeEeeehhhhcccceeeeecccccc-cccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            4 788999999999999999876555   66666543221 122344567889999999999999999999998887642


Q ss_pred             C----CCCCcEEEECC
Q 021648          269 F----DTEPPVIKWTP  280 (309)
Q Consensus       269 ~----~~~v~~l~~~p  280 (309)
                      -    .-.+++++|..
T Consensus       387 ~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  387 PYSASEVDIPSVAFDS  402 (425)
T ss_pred             CCccccccccceehhc
Confidence            2    12355666654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.65  E-value=2.2e-06  Score=71.17  Aligned_cols=232  Identities=15%  Similarity=0.250  Sum_probs=140.8

Q ss_pred             ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc-----eEEEeeecc------------cCEEEEEecCCCC--eEEE
Q 021648           55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-----YLRYFKGHH------------DRVVSLSLCSSKD--CFIS  115 (309)
Q Consensus        55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~-----~~~~~~~h~------------~~v~~v~~~~~~~--~l~s  115 (309)
                      .++.+.|...|.+++++..+   +.|-+|.-+...     ....|++|.            ..|..+.|..++.  .|+-
T Consensus        28 ~ItaVefd~tg~YlatGDkg---GRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          28 KITAVEFDETGLYLATGDKG---GRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             eeeEEEeccccceEeecCCC---ceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            46677777777787776442   567777643321     122355553            3577888886543  5777


Q ss_pred             ecCCCcEEEeeCCCceeee----------------------ee---eecC----------------c----eeEEECCCC
Q 021648          116 GSLDRTVLLWDQRAEKCQG----------------------LL---RVQG----------------R----PAAAYDDQG  150 (309)
Q Consensus       116 ~s~Dg~v~~Wd~~~~~~~~----------------------~~---~~~~----------------~----~~~~~~~~~  150 (309)
                      .+.|++|++|.+......-                      .+   ++..                +    .+..+..+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            7789999999875431100                      00   0000                0    112223344


Q ss_pred             cEEEEEECCEEEEEECCCCCcCCceEEEeCCCC-----CCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEe------
Q 021648          151 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI-----SDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLL------  218 (309)
Q Consensus       151 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~------  218 (309)
                      ..+..+.+-.|.+|++.... +.+.+..+.++.     .-+++..|+|.- ..+...+..|.|++-|++...+-      
T Consensus       185 et~lSaDdLrINLWnl~i~D-~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSADDLRINLWNLEIID-GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeeccceeeeeccccccC-CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            45555667789999876533 455555555443     224566788865 45566778999999998732211      


Q ss_pred             EEeeec-------CCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCC-ceEEEeecC------------CCCCc---E
Q 021648          219 STYNVK-------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG-KEVASWMSF------------DTEPP---V  275 (309)
Q Consensus       219 ~~~~~~-------~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~------------~~~v~---~  275 (309)
                      ......       ......+..+.|+|+|+++++-+. -+++|||+... .++.+++.|            +..|.   .
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe  342 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE  342 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence            110000       111345677899999999998866 46999999764 457776544            22232   3


Q ss_pred             EEECCCeeEEEEccce
Q 021648          276 IKWTPGSLMFVTGSSE  291 (309)
Q Consensus       276 l~~~p~~~~l~s~~~d  291 (309)
                      +.||.|.+.+.+|+..
T Consensus       343 isfSgd~~~v~sgsy~  358 (460)
T COG5170         343 ISFSGDDKHVLSGSYS  358 (460)
T ss_pred             EEecCCcccccccccc
Confidence            7888888888888864

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.63  E-value=2.1e-07  Score=85.18  Aligned_cols=123  Identities=21%  Similarity=0.282  Sum_probs=89.7

Q ss_pred             eEecCCCcceEEEEeCCCC-CEEEEeeCCCcEEEEEcCCCc-eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            5 MSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAAT-CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ..+.+|..+|+.+.|.|.. ..++|++.|..+-.||..+.. .+..+..-......+.++--...+++.+.   ...|++
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlassh---g~~i~v  184 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH---GNDIFV  184 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhcc---CCceEE
Confidence            4578999999999999854 689999999999999987543 23333322223344555432223333332   468999


Q ss_pred             EEccC-CceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCc
Q 021648           83 LSLHD-NKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAE  130 (309)
Q Consensus        83 ~d~~~-~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~  130 (309)
                      ||+.. +.++..+++|...|+.++|..- ...+.+++.|++|++||.+..
T Consensus       185 wd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  185 WDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             EeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            99865 5688999999999999999853 447899999999999997644

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.63  E-value=1.3e-05  Score=67.77  Aligned_cols=195  Identities=18%  Similarity=0.230  Sum_probs=121.5

Q ss_pred             EEeCCCCCEEEEee-----CCCcEEEEEcC-CCceeeeeeccccceeEEEEecCCCEEEEEcCCC---------------
Q 021648           17 MDFHKSSSYLVTAS-----DDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG---------------   75 (309)
Q Consensus        17 i~~s~~~~~l~t~s-----~D~~v~iWd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g---------------   75 (309)
                      -.||+||++|.|.-     ..|.|-|||+. +-+.+.++..+.-....+.+.|+++.++.+. +|               
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN-GGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN-GGIETHPDSGRAKLNLD  134 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc-CCCccCcccCceecChh
Confidence            46999999998854     45689999998 6677788887766666778889998877763 23               


Q ss_pred             -CCceeEEEEccCCceEEE--e--eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCC
Q 021648           76 -WDESLRLLSLHDNKYLRY--F--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG  150 (309)
Q Consensus        76 -~d~~i~~~d~~~~~~~~~--~--~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~  150 (309)
                       ++..+-+.|..+|+.+..  +  .-|+-.|+.+++.++|..+...-+.|.-       ....                 
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~-------~~~~-----------------  190 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP-------GDAP-----------------  190 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCC-------CccC-----------------
Confidence             245666777777776554  4  3477788888888887554444333321       0000                 


Q ss_pred             cEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC-CCcEEEEECCCCeEeEEeeecCCCC
Q 021648          151 LVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSR  228 (309)
Q Consensus       151 ~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~  228 (309)
                      -+++.- .++.+...+........        -...+-+|+++++|..+++.+- .+.+.+||..++.++.....     
T Consensus       191 PLva~~~~g~~~~~~~~p~~~~~~--------l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-----  257 (305)
T PF07433_consen  191 PLVALHRRGGALRLLPAPEEQWRR--------LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-----  257 (305)
T ss_pred             CeEEEEcCCCcceeccCChHHHHh--------hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-----
Confidence            011111 12223333321100000        1134678999999998877665 67899999999998875432     


Q ss_pred             CccceEEECCCCCEEEEEcCCC
Q 021648          229 NSTLEASFSPEGMFVISGSGDG  250 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~Dg  250 (309)
                      ..++.++-.+++ |++|.+.-.
T Consensus       258 ~D~cGva~~~~~-f~~ssG~G~  278 (305)
T PF07433_consen  258 PDACGVAPTDDG-FLVSSGQGQ  278 (305)
T ss_pred             CceeeeeecCCc-eEEeCCCcc
Confidence            223445555566 666666533

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=1.2e-07  Score=84.05  Aligned_cols=160  Identities=22%  Similarity=0.323  Sum_probs=108.1

Q ss_pred             EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCC
Q 021648           91 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE  170 (309)
Q Consensus        91 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  170 (309)
                      +..+.||+..|+.+.-..+.+-|+++|.|++|++|.++...-.  +   + .                            
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~--~---~-t----------------------------  773 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE--I---G-T----------------------------  773 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc--c---c-c----------------------------
Confidence            5568899999999987777889999999999999998643100  0   0 0                            


Q ss_pred             cCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC--CCEEEEE-c
Q 021648          171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE--GMFVISG-S  247 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~--g~~l~s~-s  247 (309)
                        ..-.++...|..++..+.|-.+.++++  +.||-+++||..-+.++......+-+ +....+.--|+  ...+.+| +
T Consensus       774 --saCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcs  848 (1034)
T KOG4190|consen  774 --SACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCS  848 (1034)
T ss_pred             --ceeeeEhhhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeecc
Confidence              001223334556677888888888765  45889999999888877644433322 22223333343  3333333 7


Q ss_pred             CCCcEEEEECCCCceEEEeec-----CCCCCcEEEECCCeeEEEEcc
Q 021648          248 GDGSVYAWSVRSGKEVASWMS-----FDTEPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       248 ~Dg~i~vwd~~~~~~~~~~~~-----~~~~v~~l~~~p~~~~l~s~~  289 (309)
                      ...+++++|.+.++.+.+++-     -++.+.+++..|.|+.++.+=
T Consensus       849 aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L  895 (1034)
T KOG4190|consen  849 AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL  895 (1034)
T ss_pred             chhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHh
Confidence            899999999999887766643     345567889889888766554

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.62  E-value=3.7e-07  Score=73.83  Aligned_cols=163  Identities=9%  Similarity=0.076  Sum_probs=95.9

Q ss_pred             eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee----eeeeecCceeEEECCCCcEEEEEEC------C
Q 021648           90 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ----GLLRVQGRPAAAYDDQGLVFAVAFG------G  159 (309)
Q Consensus        90 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------~  159 (309)
                      +.+++..|+++-..-+.+.-++.++++..||.+.+.+.+.-...    ....... ....+-..+..+....-      +
T Consensus        81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d  159 (319)
T KOG4714|consen   81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQD  159 (319)
T ss_pred             ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeecc
Confidence            34555555544333333444567999999999999886541110    0011111 11111122222222222      3


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  238 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp  238 (309)
                      ..+.|+++....-..    .......+.+++-.|.. +.+++|+.||.+-+||.+.......+  ...|..+++.+-|+|
T Consensus       160 ~~~a~~~~p~~t~~~----~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~--l~ahk~~i~eV~FHp  233 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIP----SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL--LKAHKAEIWEVHFHP  233 (319)
T ss_pred             ceeeecccccccccc----cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH--HHHhhhhhhheeccC
Confidence            445555543221111    11112347788888865 56677888999999999876444332  224667899999999


Q ss_pred             -CCCEEEEEcCCCcEEEEECCC
Q 021648          239 -EGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       239 -~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                       ++..|.++++||.+--||..+
T Consensus       234 k~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  234 KNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             CCchheeEecCCCcEEEEcCCC
Confidence             579999999999999999975

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.62  E-value=0.00017  Score=71.31  Aligned_cols=246  Identities=13%  Similarity=0.161  Sum_probs=143.4

Q ss_pred             CcceEEEEeCCCCCEEEEeeC----C--CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648           11 NGRISSMDFHKSSSYLVTASD----D--ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~----D--~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      ...-..|+|=.||.++|..+.    +  +.+|||+=+ |+...+-+.-..-...++|.|.|+.+++.........|-.|.
T Consensus       209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE  287 (928)
T PF04762_consen  209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE  287 (928)
T ss_pred             CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence            334457899999999998875    3  689999854 554333332222245789999999888765422233344443


Q ss_pred             ccCCceEEEee----ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee--eeeecCc---eeEEECC-------
Q 021648           85 LHDNKYLRYFK----GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRVQGR---PAAAYDD-------  148 (309)
Q Consensus        85 ~~~~~~~~~~~----~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~--~~~~~~~---~~~~~~~-------  148 (309)
                       ++|-....|.    .....|..+.|++|+..|+..-.|. |.+|-..+.+...  .+.....   ....+++       
T Consensus       288 -rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~  365 (928)
T PF04762_consen  288 -RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH  365 (928)
T ss_pred             -cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence             2333222332    3456899999999999998877665 9999765433211  1111000   0011111       


Q ss_pred             --------------------------CCcEEEEEECCEEEEEECCCCC-cCCceEEEeCCCCCCCeEEEEccCCCEEEEE
Q 021648          149 --------------------------QGLVFAVAFGGYIRMFDARKYE-KGPFDIFSVGGDISDANVVKFSNDGRLMLLT  201 (309)
Q Consensus       149 --------------------------~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~  201 (309)
                                                +....++..+..+++-.++... +||.-.+.+.- ...++.++|++++..+++-
T Consensus       366 v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~-~~~v~~vaf~~~~~~~avl  444 (928)
T PF04762_consen  366 VLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL-PSPVNDVAFSPSNSRFAVL  444 (928)
T ss_pred             EEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC-CCCcEEEEEeCCCCeEEEE
Confidence                                      1223334444555555544322 23443344433 3678999999999989999


Q ss_pred             eCCCcEEEEECCCCeEe--------EEeee-------cCCCCCccceEEECCCCCEEEEEcCC---CcEEEEECCCC
Q 021648          202 TMEGHIHVLDSFRGTLL--------STYNV-------KPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSG  260 (309)
Q Consensus       202 ~~dg~v~i~d~~~~~~~--------~~~~~-------~~~~~~~~~~~~~sp~g~~l~s~s~D---g~i~vwd~~~~  260 (309)
                      ..||.+.+|........        ..+..       ..........++|..+...++....+   ..+.++++...
T Consensus       445 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  521 (928)
T PF04762_consen  445 TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS  521 (928)
T ss_pred             ECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence            99999999985332211        11111       01112345567787777766666554   67888888443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.55  E-value=8.6e-05  Score=68.96  Aligned_cols=123  Identities=14%  Similarity=0.184  Sum_probs=93.0

Q ss_pred             ccceEecCCCcceEEEEeCCCC------------CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecC---CC
Q 021648            2 EVGMSFRDYNGRISSMDFHKSS------------SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH---PT   66 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~------------~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~---~~   66 (309)
                      .+++++.-|+..|+.|.|.|..            -+||++..-|.|.+||+..+..+..++.+..++..+||-+.   ..
T Consensus        46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Sr  125 (1062)
T KOG1912|consen   46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSR  125 (1062)
T ss_pred             hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcch
Confidence            3567788899999999998642            26788888999999999999999999999989999998763   32


Q ss_pred             EEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEee
Q 021648           67 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWD  126 (309)
Q Consensus        67 ~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd  126 (309)
                      .++.+-. | ..++-+|+..+|+..+.+...+....+..+.| |.+.|.--+..|.+.+-+
T Consensus       126 d~LlaIh-~-ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~  184 (1062)
T KOG1912|consen  126 DVLLAIH-G-SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCK  184 (1062)
T ss_pred             heeEEec-C-CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEe
Confidence            4444332 2 56899999999998887776666667677776 666666555567666554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=6.6e-06  Score=75.47  Aligned_cols=230  Identities=13%  Similarity=0.213  Sum_probs=140.7

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeee--eccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      ..+++.||++.|.-+.|+.+...|-|...+|-|.+|-+-.|.=....  ...+..|..++|..+|..+.....   |+.|
T Consensus        63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe---DGav  139 (1189)
T KOG2041|consen   63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE---DGAV  139 (1189)
T ss_pred             hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc---cCCE
Confidence            46789999999999999998889999999999999998776543332  233455788999999998776654   5555


Q ss_pred             EEEEccCCce-EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee-----eeeecC-------c------
Q 021648           81 RLLSLHDNKY-LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LLRVQG-------R------  141 (309)
Q Consensus        81 ~~~d~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~-----~~~~~~-------~------  141 (309)
                      -+=.+..+.. -+.++|.  ....+.|++|.+.++-+-..|.+.++|...+-..+     .....+       +      
T Consensus       140 IVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w  217 (1189)
T KOG2041|consen  140 IVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW  217 (1189)
T ss_pred             EEEeeccceecchhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence            5544443221 0122222  12368899999988888889999999864321100     000000       0      


Q ss_pred             ---eeEEECCCCcEEEEEE-CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC---------cEE
Q 021648          142 ---PAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---------HIH  208 (309)
Q Consensus       142 ---~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg---------~v~  208 (309)
                         +.....|+...+++++ .|.+.+.--.+...+ . ++.. +  -.+....++++|..|+.++.+.         .|+
T Consensus       218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P-v-v~dt-g--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~  292 (1189)
T KOG2041|consen  218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP-V-VVDT-G--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVH  292 (1189)
T ss_pred             ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC-e-EEec-c--cEeecceecCCCcEEEEccCcccccCccccceEE
Confidence               0111224555677665 466666543332211 1 1111 1  2345568999999999888653         455


Q ss_pred             EEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648          209 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  246 (309)
Q Consensus       209 i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~  246 (309)
                      .+.. -|+.+.++..   ....+..++|-..|-.+|.+
T Consensus       293 Fysp-~G~i~gtlkv---pg~~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  293 FYSP-YGHIVGTLKV---PGSCITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             Eecc-chhheEEEec---CCceeeeeEEcCCceEEEEE
Confidence            5543 2555555543   33556667776655555544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.52  E-value=7.4e-05  Score=67.29  Aligned_cols=228  Identities=13%  Similarity=0.077  Sum_probs=130.2

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeecccc-ce-e-----EEE--EecCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKKY-GV-D-----LVC--FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY   93 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~-~v-~-----~~~--~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~   93 (309)
                      +..+..++.++.+.-+|..+|+.+........ .. .     .+.  ..-++..++.+.   .++.+..+|.++|+.++.
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~---~~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS---EKGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc---CCCEEEEEECCCCCCccc
Confidence            55777778889999999999998765443220 00 0     000  011234555554   267899999999998877


Q ss_pred             eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc-------eeEEECCCCcEEEEEECCEEEEEEC
Q 021648           94 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------PAAAYDDQGLVFAVAFGGYIRMFDA  166 (309)
Q Consensus        94 ~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~d~  166 (309)
                      .+... .+.+--.. .+..++.+..++.+...|.++++..........       ...... .+.++....++.+..+|.
T Consensus       146 ~~~~~-~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~  222 (394)
T PRK11138        146 TKVAG-EALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLM  222 (394)
T ss_pred             ccCCC-ceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEc
Confidence            65432 22221111 234566677799999999999887655433210       111111 234555556777877776


Q ss_pred             CCCCcCCceEEEeCCCC--C---CCeEEEEcc--CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          167 RKYEKGPFDIFSVGGDI--S---DANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~--~---~~~~v~~s~--dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      .+.+..- . .......  .   ....+..+|  .+..+..++.+|.++.+|..+|+.+=......     ....  ..+
T Consensus       223 ~~G~~~W-~-~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-----~~~~--~~~  293 (394)
T PRK11138        223 EQGQLIW-Q-QRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-----VNDF--AVD  293 (394)
T ss_pred             cCChhhh-e-eccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-----ccCc--EEE
Confidence            6533210 0 0000000  0   000011122  23445566678999999999987664332111     1111  125


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEE
Q 021648          240 GMFVISGSGDGSVYAWSVRSGKEVAS  265 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~~~~~~~~  265 (309)
                      +..++.++.||.++.+|..+++.+-.
T Consensus       294 ~~~vy~~~~~g~l~ald~~tG~~~W~  319 (394)
T PRK11138        294 GGRIYLVDQNDRVYALDTRGGVELWS  319 (394)
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEc
Confidence            67888888999999999999876544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.46  E-value=3.9e-05  Score=71.15  Aligned_cols=240  Identities=14%  Similarity=0.172  Sum_probs=157.9

Q ss_pred             eEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC----------EEEEEcCCCCCceeEEE
Q 021648           14 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT----------TVIYSSKNGWDESLRLL   83 (309)
Q Consensus        14 V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~s~~g~d~~i~~~   83 (309)
                      -.+++|+|.| ++|=|+. ..|-+-|..+.+.++.++.|+..|..+-|.|-+-          .++.++ ....|.|-+|
T Consensus        18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs-aD~~GrIil~   94 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS-ADISGRIILV   94 (1062)
T ss_pred             ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEe-ccccCcEEEE
Confidence            6688999977 6666654 4788889999999999999999899988876321          222233 2347899999


Q ss_pred             EccCCceEEEeeecccCEEEEEecC---CCC-eEEEecCCCcEEEeeCCCceeeeeeeecCcee--EEEC--CCCcEEEE
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCS---SKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA--AAYD--DQGLVFAV  155 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~---~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~  155 (309)
                      |...+..+..+..|.+++..++|-+   +.+ .|+.=..-.++.+|+..++.............  ..++  +...+...
T Consensus        95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l  174 (1062)
T KOG1912|consen   95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL  174 (1062)
T ss_pred             EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence            9999988889999999999999875   343 44444557799999988887665544332221  1222  22334444


Q ss_pred             EECCEEEEEECCCCCc--CCceEEEeCCCC------------------CC--------CeEEEEccCCCEEEEEeCCCcE
Q 021648          156 AFGGYIRMFDARKYEK--GPFDIFSVGGDI------------------SD--------ANVVKFSNDGRLMLLTTMEGHI  207 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~--~~~~~~~~~~~~------------------~~--------~~~v~~s~dg~~l~~~~~dg~v  207 (309)
                      +..|.+.+-+......  .+.+.+.+..+.                  .+        ...++|+|.-+.++-......+
T Consensus       175 ~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prel  254 (1062)
T KOG1912|consen  175 GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPREL  254 (1062)
T ss_pred             ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccce
Confidence            5555555554322111  111111111110                  00        0124678988888888889999


Q ss_pred             EEEECCCCeEeEEeeecCCCCCccceEEECCCC--CEEEEEcCCCcEEEEECCC
Q 021648          208 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG--MFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g--~~l~s~s~Dg~i~vwd~~~  259 (309)
                      .++|+.-...+....+   ..+.+-=+.+-|++  ..+.+.-.||.+.+|-.+.
T Consensus       255 lv~dle~~~~l~vvpi---er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  255 LVFDLEYECCLAVVPI---ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEEcchhhceeEEEEe---ccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            9999877666655443   33333335666765  5789999999999998765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=4.9e-05  Score=71.24  Aligned_cols=198  Identities=15%  Similarity=0.172  Sum_probs=124.6

Q ss_pred             EecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCC--CcEEEEEEC-C----EEEEEECCCCCcC--C
Q 021648          105 SLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQ--GLVFAVAFG-G----YIRMFDARKYEKG--P  173 (309)
Q Consensus       105 ~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~-~----~i~~~d~~~~~~~--~  173 (309)
                      ++++++..++-|+.||.|.+.+-. -+...-+......  ...+..+  ..+++.+.| +    .+++||+...+..  +
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            456778899999999999888632 2221222211111  1122222  345666654 2    6999998765322  1


Q ss_pred             c-----eEEEeCC--CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-CeEeEEeeecCCCCCccceEEECCCCCEEEE
Q 021648          174 F-----DIFSVGG--DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  245 (309)
Q Consensus       174 ~-----~~~~~~~--~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s  245 (309)
                      .     .+++...  ...++.+++.|.+-+.+|+|-.||.|..+...- ...............+|+.++|..+++-++=
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            1     1222222  245788999999999999999999999875311 0111111121223467889999888877333


Q ss_pred             EcCCCcEEEEECCCCc-eEEEeecCCCCCcEEEECCCee-EEEEccceEEEeeecCCCcc
Q 021648          246 GSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSL-MFVTGSSELSFWIPDLSKLG  303 (309)
Q Consensus       246 ~s~Dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~~p~~~-~l~s~~~d~~~~~~~~~~~~  303 (309)
                      +..-..|.+|.+.... ....+..|.....|-.|++... +++++++-++++.++..+++
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~c  248 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPC  248 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCccee
Confidence            3445669999997433 2455777888999999999766 55666667999998877665

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.42  E-value=3.9e-06  Score=68.05  Aligned_cols=161  Identities=16%  Similarity=0.202  Sum_probs=81.7

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCce-eeeeeccccceeEEEEecCCCEEEEEcCCCC--CceeE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--DESLR   81 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~--d~~i~   81 (309)
                      +.|..|+++=.+-+.+--++.++++..|+.+-+.+.+.-.. .+.+..-...-...+.-.+++.+.+...+.+  -+..+
T Consensus        83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~  162 (319)
T KOG4714|consen   83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY  162 (319)
T ss_pred             eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence            34444444444444444567899999999999998764111 1122211111112222234444433211100  12355


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCcee-eeeeeecCc--eeEEEC--CCCcEEEE
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKC-QGLLRVQGR--PAAAYD--DQGLVFAV  155 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~~  155 (309)
                      .|++...+.+..-+.-.+.|.+++-+|. ...++.|+.||.+-+||.+.... ...+..+..  ....|.  ++..++++
T Consensus       163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~  242 (319)
T KOG4714|consen  163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC  242 (319)
T ss_pred             eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence            6665443333222333345888888885 45677888999999999876521 111211111  112232  23456666


Q ss_pred             EECCEEEEEE
Q 021648          156 AFGGYIRMFD  165 (309)
Q Consensus       156 ~~~~~i~~~d  165 (309)
                      +.||.+-.||
T Consensus       243 sedGslw~wd  252 (319)
T KOG4714|consen  243 SEDGSLWHWD  252 (319)
T ss_pred             cCCCcEEEEc
Confidence            6666655554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.41  E-value=0.0009  Score=56.85  Aligned_cols=249  Identities=10%  Similarity=0.119  Sum_probs=140.6

Q ss_pred             EEEEeCC-CCCEEEEeeCCCc-EEEEEcCCCceeeeeeccccc--eeEEEEecCCCEEEEEcCC--CCCceeEEEEcc-C
Q 021648           15 SSMDFHK-SSSYLVTASDDES-IRLYDVTAATCLKTINSKKYG--VDLVCFTSHPTTVIYSSKN--GWDESLRLLSLH-D   87 (309)
Q Consensus        15 ~~i~~s~-~~~~l~t~s~D~~-v~iWd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~s~~--g~d~~i~~~d~~-~   87 (309)
                      ..++.+| .+..++-+=.-|+ +-+||..+++.++.+......  --..+|+++++.++++-.+  ...+.|-|||.. +
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            3567788 4555666666664 588999999988776543322  2246899999988876421  125789999998 4


Q ss_pred             CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEEC--CCCcEEEEEECCEEEEEE
Q 021648           88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD--DQGLVFAVAFGGYIRMFD  165 (309)
Q Consensus        88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~d  165 (309)
                      -+.+..+..|--.-..+.+.||++.|+.+  +|-|.- ..++++....+.. -.++..|-  .++.+        +.-|.
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVA--NGGI~T-hpd~GR~kLNl~t-M~psL~~ld~~sG~l--------l~q~~  155 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVA--NGGIET-HPDSGRAKLNLDT-MQPSLVYLDARSGAL--------LEQVE  155 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEE--cCCCcc-CcccCceecChhh-cCCceEEEecCCCce--------eeeee
Confidence            44566677666666778899999888777  333321 1112221111100 01111111  11111        12221


Q ss_pred             CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCc-------EEEEECCCCeEeEEeeec----CCCCCccceE
Q 021648          166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-------IHVLDSFRGTLLSTYNVK----PVSRNSTLEA  234 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~-------v~i~d~~~~~~~~~~~~~----~~~~~~~~~~  234 (309)
                      +.           ..-+...++-++.+++|..+...-..|.       |.+++.  +..+..+...    ....+.+-+|
T Consensus       156 Lp-----------~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSI  222 (305)
T PF07433_consen  156 LP-----------PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSI  222 (305)
T ss_pred             cC-----------ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEE
Confidence            10           0112334566777777776655443332       333332  2222222211    1123567789


Q ss_pred             EECCCCCEEEEE-cCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          235 SFSPEGMFVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       235 ~~sp~g~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      +++++|++++.. =.-+++.+||..+++.+....-.  .+-.|+-.+++ ++++.+..
T Consensus       223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  223 AADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             EEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCCCc
Confidence            999999887555 45679999999999988765332  23445555556 55554443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=0.00015  Score=62.52  Aligned_cols=94  Identities=9%  Similarity=0.163  Sum_probs=72.9

Q ss_pred             EEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCC-eE
Q 021648           35 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CF  113 (309)
Q Consensus        35 v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l  113 (309)
                      ++..+..+.+..+-+..+...+..++|+|..+.++...  ..+..|++.|+++...+..+..| ..+++++|..|.. ++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~a--sl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I  251 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLA--SLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI  251 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeee--ccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence            55555555555565666667789999999988644332  23789999999999988888888 8899999998765 56


Q ss_pred             EEecCCCcEEEeeCCCce
Q 021648          114 ISGSLDRTVLLWDQRAEK  131 (309)
Q Consensus       114 ~s~s~Dg~v~~Wd~~~~~  131 (309)
                      ..|-..|.|.++|++...
T Consensus       252 YaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  252 YAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             EEeccCceEEEEEccCCC
Confidence            677789999999998654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.24  E-value=0.0028  Score=58.70  Aligned_cols=251  Identities=15%  Similarity=0.185  Sum_probs=136.3

Q ss_pred             CEEEEeeCCCcEEEEEcCCCceeeeeeccccc-----ee-EEEEecCCCEEEEEcCC------CCCceeEEEEccCCceE
Q 021648           24 SYLVTASDDESIRLYDVTAATCLKTINSKKYG-----VD-LVCFTSHPTTVIYSSKN------GWDESLRLLSLHDNKYL   91 (309)
Q Consensus        24 ~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~~~~~s~~------g~d~~i~~~d~~~~~~~   91 (309)
                      ..+..++.|+.|.-+|.++|+.+..+......     +. ...+  .+..++.++..      +.++.+..+|.++|+.+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence            57777888999999999999988766543210     11 1111  12334444321      23678899999999988


Q ss_pred             EEeeeccc--------------------CEE-EEEecCCCCeEEEecCCC------------------cEEEeeCCCcee
Q 021648           92 RYFKGHHD--------------------RVV-SLSLCSSKDCFISGSLDR------------------TVLLWDQRAEKC  132 (309)
Q Consensus        92 ~~~~~h~~--------------------~v~-~v~~~~~~~~l~s~s~Dg------------------~v~~Wd~~~~~~  132 (309)
                      ..+.....                    .++ ...+.+.+..++.++.|+                  .+.-.|.++++.
T Consensus       189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~  268 (488)
T cd00216         189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV  268 (488)
T ss_pred             eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence            87754211                    111 123333455666666554                  788889988887


Q ss_pred             eeeeeecCc----------eeEEEC--CCC----cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCC
Q 021648          133 QGLLRVQGR----------PAAAYD--DQG----LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR  196 (309)
Q Consensus       133 ~~~~~~~~~----------~~~~~~--~~~----~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  196 (309)
                      .........          +.....  -++    .++....+|.+..+|.++.+.    +......   ....+.+| +.
T Consensus       269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~----~W~~~~~---~~~~~~~~-~~  340 (488)
T cd00216         269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL----ISARPEV---EQPMAYDP-GL  340 (488)
T ss_pred             EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE----eeEeEee---ccccccCC-ce
Confidence            765433211          011100  112    244455678898888876542    1111000   00112233 22


Q ss_pred             EEEE-----------------EeCCCcEEEEECCCCeEeEEeeecCCCC-----CccceEEECCCCCEEEEEcCCCcEEE
Q 021648          197 LMLL-----------------TTMEGHIHVLDSFRGTLLSTYNVKPVSR-----NSTLEASFSPEGMFVISGSGDGSVYA  254 (309)
Q Consensus       197 ~l~~-----------------~~~dg~v~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~sp~g~~l~s~s~Dg~i~v  254 (309)
                      .++.                 ...+|.+.-+|+.+|+.+=+........     .+...-.....+..|+.++.||.++.
T Consensus       341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a  420 (488)
T cd00216         341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA  420 (488)
T ss_pred             EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence            2221                 1235677777887777654333210000     01100011126688999999999999


Q ss_pred             EECCCCceEEEeecCCCCCcE--EEECCCeeEE
Q 021648          255 WSVRSGKEVASWMSFDTEPPV--IKWTPGSLMF  285 (309)
Q Consensus       255 wd~~~~~~~~~~~~~~~~v~~--l~~~p~~~~l  285 (309)
                      +|..+|+.+-.+.. .+.+..  +.|..++++.
T Consensus       421 ld~~tG~~lW~~~~-~~~~~a~P~~~~~~g~~y  452 (488)
T cd00216         421 FDATTGKELWKFRT-PSGIQATPMTYEVNGKQY  452 (488)
T ss_pred             EECCCCceeeEEEC-CCCceEcCEEEEeCCEEE
Confidence            99999998877643 333322  3344455543

The alignment model contains an 8-bladed beta-propeller.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.22  E-value=0.0004  Score=64.31  Aligned_cols=69  Identities=16%  Similarity=0.248  Sum_probs=51.3

Q ss_pred             eEEEEccCCCEEEEEe-CCCcEEEEECCCCeE------------eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEE
Q 021648          187 NVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTL------------LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY  253 (309)
Q Consensus       187 ~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~~~------------~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~  253 (309)
                      ..+.+||||+++.+++ .+.+|.|+|..+...            ..+.+.    .....-.+|.++|+-+.|--.|..|-
T Consensus       324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytslf~dsqv~  399 (635)
T PRK02888        324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTLFLDSQIV  399 (635)
T ss_pred             cceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeEeecceeE
Confidence            4678999999876654 589999999876442            222221    12234578999999888889999999


Q ss_pred             EEECCC
Q 021648          254 AWSVRS  259 (309)
Q Consensus       254 vwd~~~  259 (309)
                      .||+.+
T Consensus       400 kwn~~~  405 (635)
T PRK02888        400 KWNIEA  405 (635)
T ss_pred             EEehHH
Confidence            999976

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.21  E-value=4.3e-06  Score=70.37  Aligned_cols=124  Identities=13%  Similarity=0.215  Sum_probs=90.1

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC-----ceeeeeeccccceeEEEEec-CCCEEEEEcCCCCCceeEEEE
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAA-----TCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      ++-|.++.|...++++.-|...|.|-..|+..+     .|.+.+. |...|+++..-. +..+++++   +++++|++||
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS---~M~gkikLyD  327 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMAS---DMTGKIKLYD  327 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeec---cCcCceeEee
Confidence            556888899988999999999999999999753     3333333 444566555444 33344443   4689999999


Q ss_pred             ccCCce---EEEeeecccCEEEEEe--cCCCCeEEEecCCCcEEEeeCCCceeeeeeee
Q 021648           85 LHDNKY---LRYFKGHHDRVVSLSL--CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV  138 (309)
Q Consensus        85 ~~~~~~---~~~~~~h~~~v~~v~~--~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~  138 (309)
                      +.--++   +..+.||-+.-.-+.+  .+....+++++.|--.|+|.++.++...+++.
T Consensus       328 ~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  328 LRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             ehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            865444   8899999765444443  45566889999999999999999987766654

>smart00320 WD40 WD40 repeats

Probab=98.21  E-value=3.3e-06  Score=47.66  Aligned_cols=38  Identities=34%  Similarity=0.639  Sum_probs=35.2

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD   39 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd   39 (309)
                      +..+.+..|...|.++.|++++.++++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            46788899999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.18  E-value=0.00024  Score=64.34  Aligned_cols=73  Identities=27%  Similarity=0.457  Sum_probs=58.9

Q ss_pred             CCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc--eEEEeeecCCCc
Q 021648          228 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLSKL  302 (309)
Q Consensus       228 ~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~--d~~~~~~~~~~~  302 (309)
                      ...+.+++++|+...++.|..||+|.+||..++  +..+....-.++.++|||+|-.|+.|++  ++++|...|+.+
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRG--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             CCcceEEecCcccceEEEEecCCeEEEEEcCCC--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            356788999999999999999999999999765  4444455556788999999999988887  477777666554

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.16  E-value=0.00069  Score=62.81  Aligned_cols=178  Identities=15%  Similarity=0.148  Sum_probs=99.3

Q ss_pred             ecCCCCeEE-EecCCCcEEEeeCCCceeeeeeeecCce-eEEECCCCcEEEEE-E----CCEEEEEECCCCCcCCceEEE
Q 021648          106 LCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVA-F----GGYIRMFDARKYEKGPFDIFS  178 (309)
Q Consensus       106 ~~~~~~~l~-s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~----~~~i~~~d~~~~~~~~~~~~~  178 (309)
                      +.+||+.+. +.-..+.+.+.|.++.+....+.+.+.+ ...+.+++.++.+. +    +..+...+...  ......+.
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--~d~~vvfn  277 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--RDWVVVFN  277 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecccc--CceEEEEc
Confidence            445665443 2334556667777766665555554433 34445555544333 2    12233332211  00000111


Q ss_pred             eCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-----CeEeEEeeecCCCCCccceEEECCCCCEEEEEc-CCCcE
Q 021648          179 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-----GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSV  252 (309)
Q Consensus       179 ~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s-~Dg~i  252 (309)
                      ..      ...++.++|++...  .+++|.++|..+     ...+..+..    ......+.+||||++++.++ .+.++
T Consensus       278 i~------~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV----GKsPHGV~vSPDGkylyVanklS~tV  345 (635)
T PRK02888        278 IA------RIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV----PKNPHGVNTSPDGKYFIANGKLSPTV  345 (635)
T ss_pred             hH------HHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC----CCCccceEECCCCCEEEEeCCCCCcE
Confidence            00      00134557876655  367899999987     344444332    24456799999999887775 48899


Q ss_pred             EEEECCCCce------------EEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeec
Q 021648          253 YAWSVRSGKE------------VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  298 (309)
Q Consensus       253 ~vwd~~~~~~------------~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~  298 (309)
                      .|.|+.+.+.            +++. .........+|.++|+...|=--|  +--|..+
T Consensus       346 SVIDv~k~k~~~~~~~~~~~~vvaev-evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        346 TVIDVRKLDDLFDGKIKPRDAVVAEP-ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             EEEEChhhhhhhhccCCccceEEEee-ccCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence            9999988553            2332 224456678999999877665545  4445544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=0.00013  Score=62.83  Aligned_cols=82  Identities=13%  Similarity=0.188  Sum_probs=67.4

Q ss_pred             eEecCCCcceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            5 MSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      ..+.+|...|..++|||..+ ++..++.+++|+|.|+++..+...+..+ ..+..+||..+....+++..  ..+.|.+|
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl--~nG~Vlvy  263 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGL--QNGMVLVY  263 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEec--cCceEEEE
Confidence            34567888999999999776 7899999999999999999888888877 56889999888776665543  36789999


Q ss_pred             EccCCc
Q 021648           84 SLHDNK   89 (309)
Q Consensus        84 d~~~~~   89 (309)
                      |+...+
T Consensus       264 D~R~~~  269 (463)
T KOG1645|consen  264 DMRQPE  269 (463)
T ss_pred             EccCCC
Confidence            997644

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.13  E-value=0.0043  Score=53.49  Aligned_cols=245  Identities=15%  Similarity=0.163  Sum_probs=139.0

Q ss_pred             EEeCCCCCEEEEee----------CCCcEEEEEcCCCceeeeeeccc---cc----eeEEEEecCCCEEEEEcCCCCCce
Q 021648           17 MDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSKK---YG----VDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus        17 i~~s~~~~~l~t~s----------~D~~v~iWd~~~~~~~~~~~~~~---~~----v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      +..+||++.+.+++          ..--|-+||..+......+.-..   ..    ....+++.++++++.... .-...
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~-TPa~S  119 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF-TPATS  119 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE-SSSEE
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc-CCCCe
Confidence            55789999888765          23368999999988777654322   11    234677888887765432 22567


Q ss_pred             eEEEEccCCceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCC-Cceeeeeee-e---cCce---eEEE-CCC
Q 021648           80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQR-AEKCQGLLR-V---QGRP---AAAY-DDQ  149 (309)
Q Consensus        80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~-~~~~~~~~~-~---~~~~---~~~~-~~~  149 (309)
                      |.|-|++.++.+..+.-- +   |...-|. ++.|.+-+.||++.-..+. .++...... .   ...+   ...+ ...
T Consensus       120 VtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~  195 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG  195 (342)
T ss_dssp             EEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred             EEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence            999999988877655421 1   2222232 2467788889988877765 343331110 0   0011   1122 233


Q ss_pred             CcEEEEEECCEEEEEECCCCCcCCceEEEeCC--------CCCCCeEEEEccCC-CEEEEE--eCCC-------cEEEEE
Q 021648          150 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDG-RLMLLT--TMEG-------HIHVLD  211 (309)
Q Consensus       150 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~v~~s~dg-~~l~~~--~~dg-------~v~i~d  211 (309)
                      +.++-.++.|.|+-.|+.........-+.+..        ....-..+++++.. ++++..  +.++       .|=++|
T Consensus       196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D  275 (342)
T PF06433_consen  196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD  275 (342)
T ss_dssp             TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred             CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence            45555778888888887643211111111110        01233456777644 444332  1222       366789


Q ss_pred             CCCCeEeEEeeecCCCCCccceEEECCCCC-EEEEE-cCCCcEEEEECCCCceEEEeecCC
Q 021648          212 SFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG-SGDGSVYAWSVRSGKEVASWMSFD  270 (309)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~  270 (309)
                      +.+++.+.++...    ..+.++..+-|.+ .|++. ..++.+.|||..+++.+.++....
T Consensus       276 ~~t~krv~Ri~l~----~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG  332 (342)
T PF06433_consen  276 LKTHKRVARIPLE----HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG  332 (342)
T ss_dssp             TTTTEEEEEEEEE----EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred             CCCCeEEEEEeCC----CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence            9999999887653    2455788888776 44444 568999999999999998876544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.12  E-value=0.0056  Score=54.29  Aligned_cols=101  Identities=13%  Similarity=0.150  Sum_probs=64.2

Q ss_pred             CCCCCEEEEe---------eCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648           20 HKSSSYLVTA---------SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   90 (309)
Q Consensus        20 s~~~~~l~t~---------s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~   90 (309)
                      |||+++++..         +..+.+-|||+++++....... ...+....++|+++.+++..    ++.+.+.++.+++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~----~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR----DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE----TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe----cCceEEEECCCCCe
Confidence            6788877663         2456788999998765544443 44577889999999999886    67899998877654


Q ss_pred             EE-Eeee-------c---------ccCEEEEEecCCCCeEEEecC-CCcEEEe
Q 021648           91 LR-YFKG-------H---------HDRVVSLSLCSSKDCFISGSL-DRTVLLW  125 (309)
Q Consensus        91 ~~-~~~~-------h---------~~~v~~v~~~~~~~~l~s~s~-Dg~v~~W  125 (309)
                      ++ +..|       -         .+.-.++-|+||+++|+.... |..|+.+
T Consensus        76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~  128 (353)
T PF00930_consen   76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY  128 (353)
T ss_dssp             EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred             EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence            32 2222       0         122356789999999887754 3444444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.11  E-value=3.6e-06  Score=78.87  Aligned_cols=191  Identities=17%  Similarity=0.239  Sum_probs=121.8

Q ss_pred             ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEec-CCC-c
Q 021648           44 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDR-T  121 (309)
Q Consensus        44 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg-~  121 (309)
                      +..++|+.+....++++|+.+.+.++.++.   .+.|+++++.+|.......+|...|+-+.=+.||..+++.+ +.. .
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~---~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSH---AGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeec---cceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence            344567777778899999998888988876   56899999999998888999999999999888888665554 333 4


Q ss_pred             EEEeeCCCc-eeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEE
Q 021648          122 VLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL  200 (309)
Q Consensus       122 v~~Wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~  200 (309)
                      ..+|++.+. ...+.+                                               ..-.++.||..-..-+.
T Consensus      1169 saLW~~~s~~~~~Hsf-----------------------------------------------~ed~~vkFsn~~q~r~~ 1201 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF-----------------------------------------------DEDKAVKFSNSLQFRAL 1201 (1516)
T ss_pred             HHHhccccccCccccc-----------------------------------------------cccceeehhhhHHHHHh
Confidence            568876431 100000                                               01134455544333334


Q ss_pred             EeCCCcEEEEECCCCeEeEEeeec-CCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEEC
Q 021648          201 TTMEGHIHVLDSFRGTLLSTYNVK-PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT  279 (309)
Q Consensus       201 ~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~  279 (309)
                      |+.-..+.+||..++..+.++-.. .........+.|||+.+.++   .||  -+||++..+.+..|-.++- ...=.||
T Consensus      1202 gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FH 1275 (1516)
T KOG1832|consen 1202 GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFH 1275 (1516)
T ss_pred             cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhee-ccccccc
Confidence            444456677888887766653211 11111223467888877766   344  4788887776665544331 1112378


Q ss_pred             CCeeEEEEccc
Q 021648          280 PGSLMFVTGSS  290 (309)
Q Consensus       280 p~~~~l~s~~~  290 (309)
                      |.|..++.-++
T Consensus      1276 P~g~eVIINSE 1286 (1516)
T KOG1832|consen 1276 PSGNEVIINSE 1286 (1516)
T ss_pred             CCCceEEeech
Confidence            88888877765

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=0.00024  Score=66.34  Aligned_cols=175  Identities=11%  Similarity=0.142  Sum_probs=106.3

Q ss_pred             CCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCcee
Q 021648           64 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA  143 (309)
Q Consensus        64 ~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~  143 (309)
                      +.+.++.+..   ++.+++++.....  +....|...      .-+|.+++|||.||+|.+-.+-+.+...         
T Consensus        48 ~~~~~~~GtH---~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~---------  107 (846)
T KOG2066|consen   48 HDKFFALGTH---RGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT---------  107 (846)
T ss_pred             hcceeeeccc---cceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce---------
Confidence            3456666654   5678877764432  222234333      3468899999999998886544332211         


Q ss_pred             EEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-----CCEEEEEeCCCcEEEEECCCCeEe
Q 021648          144 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-----GRLMLLTTMEGHIHVLDSFRGTLL  218 (309)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-----g~~l~~~~~dg~v~i~d~~~~~~~  218 (309)
                                         .+|..                -++.+|+++||     .+.+++||.-| +.++.-.--...
T Consensus       108 -------------------~~df~----------------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk  151 (846)
T KOG2066|consen  108 -------------------QYDFK----------------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK  151 (846)
T ss_pred             -------------------eEecC----------------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence                               11111                13567778877     46788888888 666542111111


Q ss_pred             EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeec-C-----CCCCcEEEECCCeeEEEEccceE
Q 021648          219 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS-F-----DTEPPVIKWTPGSLMFVTGSSEL  292 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~-----~~~v~~l~~~p~~~~l~s~~~d~  292 (309)
                      .+...+ ...++|.++.|  .|.++|=++.+| |+|||+.+.+.+..++. +     .-..+.+.|.+..++++-=+..+
T Consensus       152 ~~v~l~-~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v  227 (846)
T KOG2066|consen  152 DSVVLS-EGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSV  227 (846)
T ss_pred             cceeee-cCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeE
Confidence            111111 23467888888  678999998888 99999999887766532 2     12346688988887776655556


Q ss_pred             EEeeec
Q 021648          293 SFWIPD  298 (309)
Q Consensus       293 ~~~~~~  298 (309)
                      .+....
T Consensus       228 ~i~~I~  233 (846)
T KOG2066|consen  228 KICSIK  233 (846)
T ss_pred             EEEEEe
Confidence            665543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.07  E-value=0.0018  Score=63.41  Aligned_cols=229  Identities=14%  Similarity=0.177  Sum_probs=126.4

Q ss_pred             cceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee
Q 021648           54 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ  133 (309)
Q Consensus        54 ~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~  133 (309)
                      ..+..+.|..+++.++.+..   ++.|-+.|.++.. +.....-.+.|.+.+|+||...++-...++++.+=+. +=.++
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~---~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i  143 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITA---LGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPI  143 (1265)
T ss_pred             cceEEEEEecccceEEEEec---CCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccch
Confidence            35667777777777776654   5577777877653 3333445578999999999999888887888776331 11111


Q ss_pred             eeeeecCceeEEECCCCcEEEEEECCEEEEEE---CCCCCcCCceEEEeCC---CCCCCeEEEEccCCCEEEEEe----C
Q 021648          134 GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD---ARKYEKGPFDIFSVGG---DISDANVVKFSNDGRLMLLTT----M  203 (309)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d---~~~~~~~~~~~~~~~~---~~~~~~~v~~s~dg~~l~~~~----~  203 (309)
                      ......    ....+.+..+.++.+..-.=+-   -|.....+..-.+..+   ..+.-..|++--||+++++..    .
T Consensus       144 ~E~~L~----~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~  219 (1265)
T KOG1920|consen  144 AEKPLD----ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET  219 (1265)
T ss_pred             hccccc----cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence            111110    0011122333344332110000   0000000000000000   112335688889999998732    2


Q ss_pred             C-CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE---cCCCcEEEEECCC---CceEEEeecCCCCCcEE
Q 021648          204 E-GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG---SGDGSVYAWSVRS---GKEVASWMSFDTEPPVI  276 (309)
Q Consensus       204 d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~---s~Dg~i~vwd~~~---~~~~~~~~~~~~~v~~l  276 (309)
                      + +++++||.. |.+-...+..   .+--.+++|-|.|..+|+-   +.|+.|.++....   +...-.++....++..|
T Consensus       220 ~~RkirV~drE-g~Lns~se~~---~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L  295 (1265)
T KOG1920|consen  220 GTRKIRVYDRE-GALNSTSEPV---EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL  295 (1265)
T ss_pred             CceeEEEeccc-chhhcccCcc---cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence            3 799999976 4332222111   1112358999999999987   4456799998743   22223344444558999


Q ss_pred             EECCCeeEEEEccc----e-EEEe
Q 021648          277 KWTPGSLMFVTGSS----E-LSFW  295 (309)
Q Consensus       277 ~~~p~~~~l~s~~~----d-~~~~  295 (309)
                      +|+.++..|+...+    + +++|
T Consensus       296 ~Wns~sdiLAv~~~~~e~~~v~lw  319 (1265)
T KOG1920|consen  296 AWNSNSDILAVVTSNLENSLVQLW  319 (1265)
T ss_pred             eecCCCCceeeeecccccceEEEE
Confidence            99999988877322    2 6676

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.02  E-value=7e-05  Score=67.65  Aligned_cols=72  Identities=19%  Similarity=0.292  Sum_probs=58.7

Q ss_pred             CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          183 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       183 ~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      .+.+.+++++|+.+.++.|..||.|.+||..++..... .    ..-.+..++|+|+|..+++|+.-|.+.+||+.-
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k----a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K----AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e----ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            46789999999999999999999999999876543322 1    112235689999999999999999999999864

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.01  E-value=0.00077  Score=61.13  Aligned_cols=172  Identities=13%  Similarity=0.142  Sum_probs=89.4

Q ss_pred             EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCC
Q 021648           91 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE  170 (309)
Q Consensus        91 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  170 (309)
                      ++.+....-....+.++|+++.++.++ ||.-.++.....+...   .......++...+.+......+.|.++.  +++
T Consensus        25 ~k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~---~G~g~~~vw~~~n~yAv~~~~~~I~I~k--n~~   98 (443)
T PF04053_consen   25 VKELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA---FGSGLSFVWSSRNRYAVLESSSTIKIYK--NFK   98 (443)
T ss_dssp             -EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE---EEE-SEEEE-TSSEEEEE-TTS-EEEEE--TTE
T ss_pred             eccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc---cCceeEEEEecCccEEEEECCCeEEEEE--cCc
Confidence            344444555678999999999887754 8888887633222211   1111234455555544444567888873  221


Q ss_pred             cCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC
Q 021648          171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG  250 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg  250 (309)
                      ......+.+     +..+-.+-+ |.+|...+.+ .|.+||..++..+.++..     ..+..+.|+++|.++|-.+.| 
T Consensus        99 ~~~~k~i~~-----~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~~g~~val~t~~-  165 (443)
T PF04053_consen   99 NEVVKSIKL-----PFSVEKIFG-GNLLGVKSSD-FICFYDWETGKLIRRIDV-----SAVKYVIWSDDGELVALVTKD-  165 (443)
T ss_dssp             E-TT----------SS-EEEEE--SSSEEEEETT-EEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--
T ss_pred             cccceEEcC-----CcccceEEc-CcEEEEECCC-CEEEEEhhHcceeeEEec-----CCCcEEEEECCCCEEEEEeCC-
Confidence            111111111     111222222 8877777555 899999999999987753     235679999999999999866 


Q ss_pred             cEEEEECCCC-----------ceEEEeecCCCCCcEEEECCC
Q 021648          251 SVYAWSVRSG-----------KEVASWMSFDTEPPVIKWTPG  281 (309)
Q Consensus       251 ~i~vwd~~~~-----------~~~~~~~~~~~~v~~l~~~p~  281 (309)
                      +++|++....           ..+......+..|.+.+|..+
T Consensus       166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  166 SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence            5888876432           033443333567888888777

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.99  E-value=0.00097  Score=60.24  Aligned_cols=196  Identities=14%  Similarity=0.154  Sum_probs=106.4

Q ss_pred             CceeeeeeccccceeEEEEecCCCEEEEEcCCCCC-ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeE-EEecCCC
Q 021648           43 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD-ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDR  120 (309)
Q Consensus        43 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d-~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~Dg  120 (309)
                      |...+.+......+..-+|++++..+++.+..... ..+.++|+++++....+. -.+.-..-.|+|||+.| .+...||
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg  260 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG  260 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence            33333333333344555778888876665443323 468999998876443332 22223355899998865 4666788


Q ss_pred             cEEEe--eCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEE
Q 021648          121 TVLLW--DQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM  198 (309)
Q Consensus       121 ~v~~W--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l  198 (309)
                      ...+|  |+...+... +.  .                                      ..+..   ..=.+||||+.+
T Consensus       261 ~~~iy~~dl~~~~~~~-Lt--~--------------------------------------~~gi~---~~Ps~spdG~~i  296 (425)
T COG0823         261 SPDIYLMDLDGKNLPR-LT--N--------------------------------------GFGIN---TSPSWSPDGSKI  296 (425)
T ss_pred             CccEEEEcCCCCccee-cc--c--------------------------------------CCccc---cCccCCCCCCEE
Confidence            76666  333222100 00  0                                      00000   011589999998


Q ss_pred             EEEeCC-C--cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC-Cc--EEEEECCCCceEEEeecCCCC
Q 021648          199 LLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-GS--VYAWSVRSGKEVASWMSFDTE  272 (309)
Q Consensus       199 ~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D-g~--i~vwd~~~~~~~~~~~~~~~~  272 (309)
                      +-.++. |  .|.+.|+..+.. ..+....  .+. ..-.|||||++|+-.+.. |.  |.+.|+.++.....+ ..+..
T Consensus       297 vf~Sdr~G~p~I~~~~~~g~~~-~riT~~~--~~~-~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~  371 (425)
T COG0823         297 VFTSDRGGRPQIYLYDLEGSQV-TRLTFSG--GGN-SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYL  371 (425)
T ss_pred             EEEeCCCCCcceEEECCCCCce-eEeeccC--CCC-cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-ccccc
Confidence            877653 3  466667665543 2222111  111 145799999999988754 44  677777665543322 22223


Q ss_pred             CcEEEECCCeeEEEEc
Q 021648          273 PPVIKWTPGSLMFVTG  288 (309)
Q Consensus       273 v~~l~~~p~~~~l~s~  288 (309)
                      ...-.|.|+++.+...
T Consensus       372 ~e~ps~~~ng~~i~~~  387 (425)
T COG0823         372 NESPSWAPNGRMIMFS  387 (425)
T ss_pred             CCCCCcCCCCceEEEe
Confidence            3344567777655443

>smart00320 WD40 WD40 repeats

Probab=97.97  E-value=3e-05  Score=43.48  Aligned_cols=38  Identities=34%  Similarity=0.573  Sum_probs=34.0

Q ss_pred             ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEee
Q 021648           89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD  126 (309)
Q Consensus        89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd  126 (309)
                      +++..+..|...|.++.|.++++.+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45667778999999999999989999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.94  E-value=0.02  Score=56.38  Aligned_cols=198  Identities=13%  Similarity=0.223  Sum_probs=119.8

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc------
Q 021648           12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL------   85 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~------   85 (309)
                      +.|.++.|..+++.++.+..+|.|.+=|.+++. +.....-..+|.+++|+||.+.++....   .+++.+-+-      
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~---~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITG---RQTLLFMTKDFEPIA  144 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeC---CcEEEEEeccccchh
Confidence            589999999999998889899999998887643 2222233457889999999987776642   233333221      


Q ss_pred             ---------cCCceE--------EEeeec---------------------ccCEEEEEecCCCCeEEEe----cCC-CcE
Q 021648           86 ---------HDNKYL--------RYFKGH---------------------HDRVVSLSLCSSKDCFISG----SLD-RTV  122 (309)
Q Consensus        86 ---------~~~~~~--------~~~~~h---------------------~~~v~~v~~~~~~~~l~s~----s~D-g~v  122 (309)
                               ..++.+        -.|.|.                     .+.=+.|+|-.||.+|+..    ..+ +++
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki  224 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI  224 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence                     001110        012211                     1112348899999988873    235 899


Q ss_pred             EEeeCCCceeeeeee--ecCceeEEECCCCcEEEEEE----CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCC
Q 021648          123 LLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR  196 (309)
Q Consensus       123 ~~Wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  196 (309)
                      ++||-+ +.....-.  .........-|.|.++++..    ++.|.+|.-...+.+.+.+.-.. ....+..++++.++.
T Consensus       225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~-de~~ve~L~Wns~sd  302 (1265)
T KOG1920|consen  225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPL-DEKEVEELAWNSNSD  302 (1265)
T ss_pred             EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcc-cccchheeeecCCCC
Confidence            999965 43322111  11123456667787777653    56788887433332322221111 112378899999999


Q ss_pred             EEEE---EeCCCcEEEEECCCC
Q 021648          197 LMLL---TTMEGHIHVLDSFRG  215 (309)
Q Consensus       197 ~l~~---~~~dg~v~i~d~~~~  215 (309)
                      .|++   ......|++|-....
T Consensus       303 iLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  303 ILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             ceeeeecccccceEEEEEecCe
Confidence            9988   444556999976543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.91  E-value=0.0005  Score=64.76  Aligned_cols=107  Identities=12%  Similarity=0.253  Sum_probs=79.3

Q ss_pred             EEEeCCCCCEEEEee----CCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCC-CceeEEEEccCCce
Q 021648           16 SMDFHKSSSYLVTAS----DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW-DESLRLLSLHDNKY   90 (309)
Q Consensus        16 ~i~~s~~~~~l~t~s----~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~-d~~i~~~d~~~~~~   90 (309)
                      -++|+|...++|.++    ..|+|-|| +++|++.+..... ..++.+||+|..  ++.+.  || -+.+-+|.-...+.
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P-~hatSLCWHpe~--~vLa~--gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYP-VHATSLCWHPEE--FVLAQ--GWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccc-eehhhhccChHH--HHHhh--ccccceeEEEecCCcee
Confidence            457999999998887    47899998 5778765433221 124568887643  33332  33 36788888777666


Q ss_pred             EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCC
Q 021648           91 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR  128 (309)
Q Consensus        91 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~  128 (309)
                      ......|+.+|..+.|+++|+.++|+..=|.+.+|...
T Consensus        94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            66667799999999999999999999999999999754

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=0.016  Score=51.96  Aligned_cols=219  Identities=15%  Similarity=0.141  Sum_probs=138.6

Q ss_pred             EEEEeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648           15 SSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY   93 (309)
Q Consensus        15 ~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~   93 (309)
                      ..+..+++++ ..++...+..|.+.|..+.++++...... ....++++++++.++.+..+..++++.+.|-.+++.+..
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            3567788777 56666677999999988888777766554 356789999998888775432478899999888887766


Q ss_pred             eeecccCEEEEEecCCCCeEEE-ecCCCcEEEeeCCCceeee-e----eeec-CceeEEECCCCcEEEEEEC----CEEE
Q 021648           94 FKGHHDRVVSLSLCSSKDCFIS-GSLDRTVLLWDQRAEKCQG-L----LRVQ-GRPAAAYDDQGLVFAVAFG----GYIR  162 (309)
Q Consensus        94 ~~~h~~~v~~v~~~~~~~~l~s-~s~Dg~v~~Wd~~~~~~~~-~----~~~~-~~~~~~~~~~~~~~~~~~~----~~i~  162 (309)
                      ...-..+ ..+++.|+++.+.. -..++.+.+.|........ .    .... ........+++..+.+..+    +.+.
T Consensus       156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~  234 (381)
T COG3391         156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL  234 (381)
T ss_pred             EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence            4433344 88999999995544 4578999999976665442 1    1111 1223455566654444332    4677


Q ss_pred             EEECCCCCcCCceEE-EeCCCCCCCeEEEEccCCCEEEEE-eCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          163 MFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~-~~~~~~~~~~~v~~s~dg~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      ..|.....-   ... ...+.. ....+.++|+|+.+-.. ...+.|.+.|..+..+.............+..+++.+.
T Consensus       235 ~id~~~~~v---~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         235 KIDTATGNV---TATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             EEeCCCceE---EEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence            777654221   111 011111 34567899999987776 44589999998887776655432222223444555543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.90  E-value=0.014  Score=51.29  Aligned_cols=271  Identities=13%  Similarity=0.128  Sum_probs=114.5

Q ss_pred             EEeCCCCCEEE-EeeCCCcEEEE--EcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648           17 MDFHKSSSYLV-TASDDESIRLY--DVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY   93 (309)
Q Consensus        17 i~~s~~~~~l~-t~s~D~~v~iW--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~   93 (309)
                      =+|.+||+.|+ .+..|+.-.+|  |+.+++..+.-.+........+.++..+.+++.-.   +..++..|+++.+....
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~---~~~l~~vdL~T~e~~~v  117 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN---GRSLRRVDLDTLEERVV  117 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET---TTEEEEEETTT--EEEE
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC---CCeEEEEECCcCcEEEE
Confidence            35678887654 45557766666  77888877766654332334566777777766532   45789999999887666


Q ss_pred             eeecccCEEEEEec--CCCCeEEEec---CC-------------------CcEEEeeCCCceeeeeeeecCc-eeEEECC
Q 021648           94 FKGHHDRVVSLSLC--SSKDCFISGS---LD-------------------RTVLLWDQRAEKCQGLLRVQGR-PAAAYDD  148 (309)
Q Consensus        94 ~~~h~~~v~~v~~~--~~~~~l~s~s---~D-------------------g~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~  148 (309)
                      +.-..+.+-...|.  .|+..++-.-   .|                   ..|.--|+++++....+....- .-..++|
T Consensus       118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP  197 (386)
T PF14583_consen  118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP  197 (386)
T ss_dssp             EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred             EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence            66666655444443  3444332211   11                   1122223333332222221110 0112222


Q ss_pred             -CCcEEEEEECC-----EEEEEECCCCCcCCceEEEeCCCCC--CCeEEEEccCCCEEEEEe-----CCCcEEEEECCCC
Q 021648          149 -QGLVFAVAFGG-----YIRMFDARKYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLLTT-----MEGHIHVLDSFRG  215 (309)
Q Consensus       149 -~~~~~~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~v~~s~dg~~l~~~~-----~dg~v~i~d~~~~  215 (309)
                       +..++.-+..|     .-|||-++.......   .+..+..  .+.---|+|||..+..-+     .+..|.-+|+.++
T Consensus       198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~---~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~  274 (386)
T PF14583_consen  198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVK---KVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG  274 (386)
T ss_dssp             TEEEEEEEEE-S-TTTSS-SEEEEETTS---E---ESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred             CCCCEEEEeccCCcceeceEEEEEEcCCCcce---eeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence             23344433321     136675543221111   1111111  111123789998766422     2335677788877


Q ss_pred             eEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC----------------cEEEEECCCCceEEEeecC----------
Q 021648          216 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG----------------SVYAWSVRSGKEVASWMSF----------  269 (309)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg----------------~i~vwd~~~~~~~~~~~~~----------  269 (309)
                      +.......     ....-..-++||+.++-=+.|.                -|+++++..++... +..|          
T Consensus       275 ~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~  348 (386)
T PF14583_consen  275 ERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGD  348 (386)
T ss_dssp             -EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BTTB
T ss_pred             CceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCC
Confidence            65432222     1222345678998876545542                56788887765432 2122          


Q ss_pred             CC-CCcEEEECCCeeEEEEccce---EEEeeecC
Q 021648          270 DT-EPPVIKWTPGSLMFVTGSSE---LSFWIPDL  299 (309)
Q Consensus       270 ~~-~v~~l~~~p~~~~l~s~~~d---~~~~~~~~  299 (309)
                      .. .-+...|+||++.++-.|..   ..++..++
T Consensus       349 ~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i  382 (386)
T PF14583_consen  349 RQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEI  382 (386)
T ss_dssp             SSTT----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred             CccCCCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence            11 24679999999987766642   55555443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.0034  Score=58.91  Aligned_cols=152  Identities=12%  Similarity=0.186  Sum_probs=98.8

Q ss_pred             ecCCCcceEEEEeCCC-------------CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecC-----CCEE
Q 021648            7 FRDYNGRISSMDFHKS-------------SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-----PTTV   68 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~-------------~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~   68 (309)
                      |..|.+.|.-..+.-+             |.+++|||.||+|.|-.+.+.+...++..+. ++..++++|+     .+.+
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~r-piksial~Pd~~~~~sk~f  132 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKR-PIKSIALHPDFSRQQSKQF  132 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecCC-cceeEEeccchhhhhhhhe
Confidence            4568887776666544             9999999999999999988877776665543 5778888887     2345


Q ss_pred             EEEcCCCCCceeEEEEccC--CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC---c--
Q 021648           69 IYSSKNGWDESLRLLSLHD--NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---R--  141 (309)
Q Consensus        69 ~~~s~~g~d~~i~~~d~~~--~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~---~--  141 (309)
                      +++   |.-+ +-++.-.-  .+-...+..-.++|.++.|.  |+++|=++ |--|+++|..+.+....+..+.   +  
T Consensus       133 v~G---G~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e  205 (846)
T KOG2066|consen  133 VSG---GMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPE  205 (846)
T ss_pred             eec---Ccce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CCCcEEEeccccceeeccCCCCCCCCcc
Confidence            544   3233 55554221  11111455567899999997  45555555 5557999988777665553322   1  


Q ss_pred             ---eeEEECCCCcEEEEEECCEEEEEECC
Q 021648          142 ---PAAAYDDQGLVFAVAFGGYIRMFDAR  167 (309)
Q Consensus       142 ---~~~~~~~~~~~~~~~~~~~i~~~d~~  167 (309)
                         +...+. +...+..|.+.+|++..++
T Consensus       206 ~fpphl~W~-~~~~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  206 LFPPHLHWQ-DEDRLVIGWGDSVKICSIK  233 (846)
T ss_pred             cCCCceEec-CCCeEEEecCCeEEEEEEe
Confidence               112222 3345667888899999887

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.77  E-value=0.02  Score=51.38  Aligned_cols=269  Identities=14%  Similarity=0.103  Sum_probs=133.2

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC----
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN----   88 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~----   88 (309)
                      +|+.++|+++..-|+.|-..|.|-||-....+.-.  .....+.....+.+     +    ...+..-.+-|+...    
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~-----~----~~~~~~~~l~di~~r~~~~   71 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRR-----F----SLNNSPGKLTDISDRAPPS   71 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S-----------GGGSS-SEEE-GGG--TT
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccc-----c----cccCCCcceEEehhhCCcc
Confidence            58899999998889999999999999765322111  00000000000000     0    000112223333221    


Q ss_pred             -----ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC---------c------eeEEECC
Q 021648           89 -----KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---------R------PAAAYDD  148 (309)
Q Consensus        89 -----~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~---------~------~~~~~~~  148 (309)
                           .+...+...+++|++++.+ |=.+++.|..+|.+.+-|+|.+..+....+..         .      ..+.+..
T Consensus        72 ~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~  150 (395)
T PF08596_consen   72 LKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG  150 (395)
T ss_dssp             -SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred             cccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence                 1233445568899999986 44589999999999999999887665432222         0      1122334


Q ss_pred             CC----cEEEEEECCEEEEEECCCCCcCCceEEE--eC-CCCCCCeEEE-EccC-----------------C---CEEEE
Q 021648          149 QG----LVFAVAFGGYIRMFDARKYEKGPFDIFS--VG-GDISDANVVK-FSND-----------------G---RLMLL  200 (309)
Q Consensus       149 ~~----~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~-~~~~~~~~v~-~s~d-----------------g---~~l~~  200 (309)
                      ++    .++.+...|.+.+|.+.-...+.+.+..  .. .+.+.+..+. |+.+                 |   ..++.
T Consensus       151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV  230 (395)
T PF08596_consen  151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV  230 (395)
T ss_dssp             SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred             CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence            43    2444445689999986422223333211  11 1223333322 3211                 1   22455


Q ss_pred             EeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE-----CCCCCEEEEEcCCCcEEEEECCCCceEEEeecCC----C
Q 021648          201 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF-----SPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD----T  271 (309)
Q Consensus       201 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-----sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~----~  271 (309)
                      ...+..++++...+.+..+.....   ...+..+.+     ...+..|++-..+|.|+++.+..-+.+....-..    .
T Consensus       231 vvSe~~irv~~~~~~k~~~K~~~~---~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~  307 (395)
T PF08596_consen  231 VVSESDIRVFKPPKSKGAHKSFDD---PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR  307 (395)
T ss_dssp             EE-SSEEEEE-TT---EEEEE-SS----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred             EEcccceEEEeCCCCcccceeecc---ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence            566888999998877665543311   111223444     2357788888999999999999988887765422    2


Q ss_pred             CCcEEEECCCeeEEEEcc-ceEEEee
Q 021648          272 EPPVIKWTPGSLMFVTGS-SELSFWI  296 (309)
Q Consensus       272 ~v~~l~~~p~~~~l~s~~-~d~~~~~  296 (309)
                      ......++++|..+.-.+ .+..++.
T Consensus       308 ~~~~ssis~~Gdi~~~~gpsE~~l~s  333 (395)
T PF08596_consen  308 RLSSSSISRNGDIFYWTGPSEIQLFS  333 (395)
T ss_dssp             HHTT-EE-TTS-EEEE-SSSEEEEEE
T ss_pred             cccccEECCCCCEEEEeCcccEEEEE
Confidence            244577899998775554 4655553

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.73  E-value=0.0012  Score=62.62  Aligned_cols=172  Identities=17%  Similarity=0.290  Sum_probs=112.2

Q ss_pred             CCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCC-cEEE
Q 021648           76 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG-LVFA  154 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  154 (309)
                      .-..+-.+|+.+.+..+...--...|.-+  ..+++.+.+|...|+|.+-|+++-+.++.+..+......++-.| .+++
T Consensus       155 ~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLit  232 (1118)
T KOG1275|consen  155 LQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLIT  232 (1118)
T ss_pred             hhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEE
Confidence            34567778888877665554333344444  45678999999999999999998888887765544444444444 4556


Q ss_pred             EEE---------CCEEEEEECCCCCc-CCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCC-CeE-eEEe
Q 021648          155 VAF---------GGYIRMFDARKYEK-GPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFR-GTL-LSTY  221 (309)
Q Consensus       155 ~~~---------~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~-~~~-~~~~  221 (309)
                      +|.         |..|++||+|.++. .++.+     + ..-.-+.|.|.- ..++..+..|...+-|..+ ++. ...+
T Consensus       233 CG~S~R~~~l~~D~FvkVYDLRmmral~PI~~-----~-~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~  306 (1118)
T KOG1275|consen  233 CGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF-----P-YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK  306 (1118)
T ss_pred             eecccccccccccchhhhhhhhhhhccCCccc-----c-cCchhhhhcccccceEEEEecccceeeccccccCCCcccee
Confidence            654         46789999997652 11111     1 011234555543 4567788888988888322 222 2222


Q ss_pred             eecCCCCCccceEEECCCCCEEEEEcCCCcEEEEE
Q 021648          222 NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS  256 (309)
Q Consensus       222 ~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd  256 (309)
                      ...+. ...+...++|++|+.+|-|..+|.|.+|-
T Consensus       307 ~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  307 MVNPN-GSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             EEccC-CCcceeEEecCCCceEEEecccCcEeeec
Confidence            22221 23367889999999999999999999998

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.0068  Score=57.45  Aligned_cols=193  Identities=16%  Similarity=0.226  Sum_probs=110.7

Q ss_pred             EEEEecCCCEEEEEcCCCCCceeEEEEccCCce-EEEeeecccC-EEEEEecCCCCeEEEecCCCc-----EEEeeCCC-
Q 021648           58 LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-LRYFKGHHDR-VVSLSLCSSKDCFISGSLDRT-----VLLWDQRA-  129 (309)
Q Consensus        58 ~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~-~~~~~~h~~~-v~~v~~~~~~~~l~s~s~Dg~-----v~~Wd~~~-  129 (309)
                      .-|+++.+..++.++.   ++  +||-++++-. +..++.+... |..+....+.++|++-+.|+.     +++||++. 
T Consensus        28 isc~~s~~~~vvigt~---~G--~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   28 ISCCSSSTGSVVIGTA---DG--RVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             eeEEcCCCceEEEeec---cc--cEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence            4466777777777764   44  4455545443 3777888777 444444444468888887764     89999753 


Q ss_pred             -----ceeeeeeee-----c--C--ceeEEECCCCcEEEEEE-CCEEEEEE--CCCCCcCCceEEEeCCCCCCCeEEEEc
Q 021648          130 -----EKCQGLLRV-----Q--G--RPAAAYDDQGLVFAVAF-GGYIRMFD--ARKYEKGPFDIFSVGGDISDANVVKFS  192 (309)
Q Consensus       130 -----~~~~~~~~~-----~--~--~~~~~~~~~~~~~~~~~-~~~i~~~d--~~~~~~~~~~~~~~~~~~~~~~~v~~s  192 (309)
                           +++....+.     +  .  .+..+.+.+-..+++|+ +|.|..+.  +... ++. ...-......+++.+++-
T Consensus       103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD-rgs-r~~~~~~~~~pITgL~~~  180 (933)
T KOG2114|consen  103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD-RGS-RQDYSHRGKEPITGLALR  180 (933)
T ss_pred             CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc-ccc-ceeeeccCCCCceeeEEe
Confidence                 233311221     1  1  12334445556677775 67888774  2211 111 122222234689999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeE-eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 021648          193 NDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       193 ~dg~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~  261 (309)
                      .+++.++-...-.+|.+|.+....+ .....   .+.....+.+|++....++.|+. ..+++|+.....
T Consensus       181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld---~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~  246 (933)
T KOG2114|consen  181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLD---NNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRG  246 (933)
T ss_pred             cCCceeEEEEecceeEEEEecCCCcceeeec---cCCccceeeecCCCCccEEEecC-ceEEEEcCCCcc
Confidence            9998855555566788888763331 22222   23344556677776554555554 459999986543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.72  E-value=0.04  Score=51.18  Aligned_cols=228  Identities=19%  Similarity=0.241  Sum_probs=122.8

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeecccc------c-ee-EEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKKY------G-VD-LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF   94 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~------~-v~-~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~   94 (309)
                      +..+..++.|+.|.-.|..+|+.+..+.....      . +. .++.. ++..++.++.   ++.+..+|.++|+.+..+
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~---~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF---DGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC---CCeEEEEECCCCCEeeee
Confidence            34566677889999999999988766543321      0 00 01111 2245665543   789999999999988877


Q ss_pred             eecccC--EEEEEecC--CCCeEEEec---------CCCcEEEeeCCCceeeeeeeecCc--------------------
Q 021648           95 KGHHDR--VVSLSLCS--SKDCFISGS---------LDRTVLLWDQRAEKCQGLLRVQGR--------------------  141 (309)
Q Consensus        95 ~~h~~~--v~~v~~~~--~~~~l~s~s---------~Dg~v~~Wd~~~~~~~~~~~~~~~--------------------  141 (309)
                      ......  -..+.-+|  .+..++.++         .++.+...|.++++..........                    
T Consensus       137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            543221  00111111  123444443         468888889988877655433110                    


Q ss_pred             ---eeEEECC-CCcEEEEEECC------------------EEEEEECCCCCcCCceEEEeC--CCC-------CCCeEEE
Q 021648          142 ---PAAAYDD-QGLVFAVAFGG------------------YIRMFDARKYEKGPFDIFSVG--GDI-------SDANVVK  190 (309)
Q Consensus       142 ---~~~~~~~-~~~~~~~~~~~------------------~i~~~d~~~~~~~~~~~~~~~--~~~-------~~~~~v~  190 (309)
                         ....+++ .+.++....++                  .+.-+|..+.+.    .....  .+.       .......
T Consensus       217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~----~W~~~~~~~~~~~~~~~s~p~~~~  292 (488)
T cd00216         217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV----KWFYQTTPHDLWDYDGPNQPSLAD  292 (488)
T ss_pred             CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE----EEEeeCCCCCCcccccCCCCeEEe
Confidence               0122232 23444443332                  566667655432    11111  000       0000001


Q ss_pred             E-ccCCC---EEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE------------------cC
Q 021648          191 F-SNDGR---LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG------------------SG  248 (309)
Q Consensus       191 ~-s~dg~---~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~------------------s~  248 (309)
                      . .-+|.   .++.++.+|.++.+|..+|+.+=......      ..++.+|  ..+..+                  ..
T Consensus       293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~------~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~  364 (488)
T cd00216         293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE------QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPG  364 (488)
T ss_pred             ccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec------cccccCC--ceEEEccccccccCcccccCCCCCCC
Confidence            1 12343   57778889999999999999876544210      1123444  223222                  24


Q ss_pred             CCcEEEEECCCCceEEEe
Q 021648          249 DGSVYAWSVRSGKEVASW  266 (309)
Q Consensus       249 Dg~i~vwd~~~~~~~~~~  266 (309)
                      +|.+.-.|+.+++.+-+.
T Consensus       365 ~G~l~AlD~~tG~~~W~~  382 (488)
T cd00216         365 KGGLAALDPKTGKVVWEK  382 (488)
T ss_pred             ceEEEEEeCCCCcEeeEe
Confidence            678888999888876554

The alignment model contains an 8-bladed beta-propeller.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.69  E-value=0.023  Score=51.70  Aligned_cols=224  Identities=13%  Similarity=0.142  Sum_probs=111.2

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE-EccC
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL-SLHD   87 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~-d~~~   87 (309)
                      ...-....++++|+|+.++. ..||...|+.........  .+   .....+|.+.+.+.+.-+    ..+|+++ +++.
T Consensus        30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~--~G---~g~~~vw~~~n~yAv~~~----~~~I~I~kn~~~   99 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA--FG---SGLSFVWSSRNRYAVLES----SSTIKIYKNFKN   99 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE--EE---E-SEEEE-TSSEEEEE-T----TS-EEEEETTEE
T ss_pred             CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc--cC---ceeEEEEecCccEEEEEC----CCeEEEEEcCcc
Confidence            34445779999999998877 568888888844332222  11   234567777554433322    4678885 4433


Q ss_pred             CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECC
Q 021648           88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR  167 (309)
Q Consensus        88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  167 (309)
                      .. ++.++-. ..+..+  .+ |..|...+.+ .|.+||.++++.+..+.......+..++++.+++...+..+.+++..
T Consensus       100 ~~-~k~i~~~-~~~~~I--f~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~  173 (443)
T PF04053_consen  100 EV-VKSIKLP-FSVEKI--FG-GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYN  173 (443)
T ss_dssp             -T-T-----S-S-EEEE--E--SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred             cc-ceEEcCC-cccceE--Ec-CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEec
Confidence            22 2222211 122332  22 7777766644 89999999999888777654445677888888888888888888643


Q ss_pred             CC------CcC---CceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648          168 KY------EKG---PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  238 (309)
Q Consensus       168 ~~------~~~---~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp  238 (309)
                      ..      +.+   .+....  .....|.+.++..|  .++..+.. +++-  +..|+.-. +..   -..+..-+.+.|
T Consensus       174 ~~~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~-i~~---ld~~~yllgy~~  242 (443)
T PF04053_consen  174 LEAVAAIPEEGVEDAFELIH--EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGI-IAH---LDKPLYLLGYLP  242 (443)
T ss_dssp             HHHHHHBTTTB-GGGEEEEE--EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEE-EEE----SS--EEEEEET
T ss_pred             chhcccccccCchhceEEEE--EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcce-EEE---cCCceEEEEEEc
Confidence            21      001   111111  11235666777655  55555555 6664  33343221 111   123445567777


Q ss_pred             CCCEEEEEcCCCcEEEEECCC
Q 021648          239 EGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      +.+.+.....|+.+..+.+..
T Consensus       243 ~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  243 KENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             TTTEEEEE-TT--EEEEE--H
T ss_pred             cCCEEEEEECCCCEEEEEECH
Confidence            777888888888888777643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.58  E-value=0.056  Score=49.00  Aligned_cols=244  Identities=15%  Similarity=0.140  Sum_probs=121.5

Q ss_pred             eEEEEeCCCCCEEEEe-eCCC----cEEEEEcCCCceeeee-eccccceeEEEEecCCCEEEEEcCCCC--------Cce
Q 021648           14 ISSMDFHKSSSYLVTA-SDDE----SIRLYDVTAATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGW--------DES   79 (309)
Q Consensus        14 V~~i~~s~~~~~l~t~-s~D~----~v~iWd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~s~~g~--------d~~   79 (309)
                      +...+++|||+++|-+ +..|    ++++.|+.+|+.+... ....  ...++|.++++.+++...+..        ...
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            4467899999987633 3333    5999999999766432 2221  123899999998887754331        456


Q ss_pred             eEEEEccCCce--EEEeeecccC--EEEEEecCCCCeEEEe-cCC---CcEEEeeCCCc----eeeeeeee--cCceeEE
Q 021648           80 LRLLSLHDNKY--LRYFKGHHDR--VVSLSLCSSKDCFISG-SLD---RTVLLWDQRAE----KCQGLLRV--QGRPAAA  145 (309)
Q Consensus        80 i~~~d~~~~~~--~~~~~~h~~~--v~~v~~~~~~~~l~s~-s~D---g~v~~Wd~~~~----~~~~~~~~--~~~~~~~  145 (309)
                      |..|.+.+...  ...+......  ...+..++|+++++.. ...   ..+.+-|...+    .....+..  .......
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            78888876543  3555554443  5678889999976533 322   34566676653    11111211  1111111


Q ss_pred             ECCCCcEEEEEE----CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEE-EeCCC--cEEEEECCCCeEe
Q 021648          146 YDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL-TTMEG--HIHVLDSFRGTLL  218 (309)
Q Consensus       146 ~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~-~~~dg--~v~i~d~~~~~~~  218 (309)
                      ....+.++..+.    .+.|...++............+ .+...+....++..+..|+. ...++  .|+++|+..+...
T Consensus       284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~  362 (414)
T PF02897_consen  284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKES  362 (414)
T ss_dssp             EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred             EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEE
Confidence            112333333332    2456666665443211111111 11222233334444444444 34444  6888888734444


Q ss_pred             EEeeecCCCCCccceEEECCCCCEE-EEEcC---CCcEEEEECCCCce
Q 021648          219 STYNVKPVSRNSTLEASFSPEGMFV-ISGSG---DGSVYAWSVRSGKE  262 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~sp~g~~l-~s~s~---Dg~i~vwd~~~~~~  262 (309)
                      ......  ..+.+..+...+++..+ ++.+.   =.+++.||+.+++.
T Consensus       363 ~~~~~p--~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  363 REIPLP--EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEESS--SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             eeecCC--cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            433322  12333344444544333 22222   24788888888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.53  E-value=0.038  Score=50.11  Aligned_cols=110  Identities=14%  Similarity=0.117  Sum_probs=69.7

Q ss_pred             CcceEEEEeCCCCCEEEEeeC---C-CcEEEEEcCCCceeeeee--ccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648           11 NGRISSMDFHKSSSYLVTASD---D-ESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~---D-~~v~iWd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      ...+..-+|+|++..++-.+.   . ..+.++|+++++....+.  ++.   ..-.|+|++++++.+........|.+.|
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~d  268 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMD  268 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEc
Confidence            345666789999987655432   2 358888998776544433  332   3457899999988877654466777888


Q ss_pred             ccCCceEEEeeecccCEEEEEecCCCCeEEEec-CCCcEEE
Q 021648           85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLL  124 (309)
Q Consensus        85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~  124 (309)
                      +.+++..+ +..-.+.-..=.|+|||+.++=.+ ..|.-.+
T Consensus       269 l~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I  308 (425)
T COG0823         269 LDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQI  308 (425)
T ss_pred             CCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcce
Confidence            87776333 443333334567899998766543 3443333

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.52  E-value=0.039  Score=53.36  Aligned_cols=129  Identities=19%  Similarity=0.223  Sum_probs=81.5

Q ss_pred             CceeEEEEccCCceEEEeeecccC-EEEEEecCCC-------CeEEEecCCCcEEEeeCCCce--eeee--eeec---Cc
Q 021648           77 DESLRLLSLHDNKYLRYFKGHHDR-VVSLSLCSSK-------DCFISGSLDRTVLLWDQRAEK--CQGL--LRVQ---GR  141 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h~~~-v~~v~~~~~~-------~~l~s~s~Dg~v~~Wd~~~~~--~~~~--~~~~---~~  141 (309)
                      ...+.-.|++.|+.+...+-|... |..+  .|+.       .....|-.+..+..||+|-..  ++..  ....   ..
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            567888899999999988887754 5544  4532       234566668899999998643  2211  0111   11


Q ss_pred             eeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEEC
Q 021648          142 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS  212 (309)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~  212 (309)
                      .+.+-..+|.++.++.+|.||+||-- ..+-+..+.   +-..+|..|..+.||+++++.+ +..+.+++.
T Consensus       581 s~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp---~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  581 SCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALP---GLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             eEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCC---CCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            23444566777777788999999932 121111111   2235789999999999987665 445556663

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.51  E-value=0.068  Score=48.37  Aligned_cols=189  Identities=16%  Similarity=0.178  Sum_probs=98.6

Q ss_pred             eeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeee----eecCceeE-----EECCC
Q 021648           79 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAA-----AYDDQ  149 (309)
Q Consensus        79 ~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~----~~~~~~~~-----~~~~~  149 (309)
                      .|++|+... +.+..+.--.+.+.++.|..+. .|+.-..||+++++|+.... ...+    ........     .+...
T Consensus        62 ~I~iys~sG-~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSSG-KLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCCC-CEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence            477777644 3444444333899999998754 56666689999999985333 1111    00010001     11123


Q ss_pred             CcEEEEEECCEEEEEECCCCCcC-C---c-eEEE----eCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEE
Q 021648          150 GLVFAVAFGGYIRMFDARKYEKG-P---F-DIFS----VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST  220 (309)
Q Consensus       150 ~~~~~~~~~~~i~~~d~~~~~~~-~---~-~~~~----~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~  220 (309)
                      | ++....++.+.+.+  +...+ .   . .+..    ............++.+....+....++.+++.+......+  
T Consensus       139 G-ivvLt~~~~~~~v~--n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i--  213 (410)
T PF04841_consen  139 G-IVVLTGNNRFYVVN--NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQI--  213 (410)
T ss_pred             C-EEEECCCCeEEEEe--CccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccc--
Confidence            3 33333344443332  21111 0   0 0000    0001111111345556666666666666765553321110  


Q ss_pred             eeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC-CCCCcEEEECC
Q 021648          221 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTP  280 (309)
Q Consensus       221 ~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~~p  280 (309)
                           ...+++..++.||+|+++|.-..+|.+.|.+..-.+...++... ...+..++|--
T Consensus       214 -----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG  269 (410)
T PF04841_consen  214 -----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG  269 (410)
T ss_pred             -----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence                 12356788999999999999999999999987666555554333 23444555543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.50  E-value=4.9e-05  Score=69.13  Aligned_cols=200  Identities=15%  Similarity=0.137  Sum_probs=121.4

Q ss_pred             ceEEEEeCC--CCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCEEEEEcCC--CCCceeEEEEcc
Q 021648           13 RISSMDFHK--SSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKN--GWDESLRLLSLH   86 (309)
Q Consensus        13 ~V~~i~~s~--~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~--g~d~~i~~~d~~   86 (309)
                      .+.|+++.-  +.-+++.|..+|.|-+=.+....  ......++...+++++|.+-...+++++..  .-|..+.+||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            456666654  33578899999999887665321  123345555668888888754444433222  126689999998


Q ss_pred             CC--c--eEEEeee-cccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee-eeeeeecCceeEEECC-CCcEEEEEECC
Q 021648           87 DN--K--YLRYFKG-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQGRPAAAYDD-QGLVFAVAFGG  159 (309)
Q Consensus        87 ~~--~--~~~~~~~-h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~  159 (309)
                      ++  .  .-..|.+ -.....+++|..+.+.+++|...+.+.+.|++...- ...+..+.+.....+| .+.+++...++
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg  217 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDG  217 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccC
Confidence            76  2  1222333 445667888888899999999999999999874311 1111111222334444 55677777899


Q ss_pred             EEEEEE-CCCCCcCCceEEEeC--CCCCCCeEEEEccCC--CEEEEEeCCCcEEEEECC
Q 021648          160 YIRMFD-ARKYEKGPFDIFSVG--GDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSF  213 (309)
Q Consensus       160 ~i~~~d-~~~~~~~~~~~~~~~--~~~~~~~~v~~s~dg--~~l~~~~~dg~v~i~d~~  213 (309)
                      .|-+|| .++.+.+ +......  .....+..++++|-.  ...+..-..++|+++|+.
T Consensus       218 ~iAiwD~~rnienp-l~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  218 DIAIWDTYRNIENP-LQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ceeeccchhhhccH-HHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            999999 5554432 1111110  111246778888854  333334456899999864

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.45  E-value=0.00046  Score=63.60  Aligned_cols=112  Identities=14%  Similarity=0.256  Sum_probs=83.2

Q ss_pred             CeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCce---
Q 021648          186 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE---  262 (309)
Q Consensus       186 ~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~---  262 (309)
                      +..-+++..+++++.|+.-|.+++|+...+..+.... . ...+.+..+..|++..++|.|+..|.|.|+-+....+   
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~-~-~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN-E-GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhcccc-c-CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            3444678889999999999999999987766554221 1 1234455678999999999999999999999876432   


Q ss_pred             --EEEe-ecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          263 --VASW-MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       263 --~~~~-~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                        +..+ ..|+..|++++|++|+..+-+|.+-.++-...|
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L  153 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL  153 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence              1111 247889999999999999999988755544333

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.45  E-value=0.05  Score=45.42  Aligned_cols=213  Identities=12%  Similarity=0.180  Sum_probs=101.3

Q ss_pred             eEecCCCcceEEEEeCCCCCE-EEEeeCCCcEEEEEcCCCceeeeeeccc-cceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSY-LVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~-l~t~s~D~~v~iWd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      +.+.+-...++.|+|+|+.+. ++.....+.|-..+. +|+.++.+.... .-...+++..++.+++..-   -++.+.+
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~E---r~~~L~~   90 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEE---RDQRLYI   90 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEET---TTTEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEc---CCCcEEE
Confidence            455666678999999998664 555555666666665 578887775433 2256677766665554432   1567888


Q ss_pred             EEccCCc---eE---EEee-----ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCc
Q 021648           83 LSLHDNK---YL---RYFK-----GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL  151 (309)
Q Consensus        83 ~d~~~~~---~~---~~~~-----~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~  151 (309)
                      +++....   ..   ..+.     .+...+-+++|.+.++.|..+-.....+++.+..-.                    
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~--------------------  150 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP--------------------  150 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--------------------
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc--------------------
Confidence            8773321   11   1111     233457778888876666666444444444321100                    


Q ss_pred             EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCC--
Q 021648          152 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR--  228 (309)
Q Consensus       152 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~--  228 (309)
                           .+..+.+.+.....       .......+...+++.|. |++++....+..+..+| .+|+.+..+.......  
T Consensus       151 -----~~~~~~~~~~~~~~-------~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl  217 (248)
T PF06977_consen  151 -----GGFDLFVSDDQDLD-------DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL  217 (248)
T ss_dssp             ------SS--EEEE-HHHH--------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-
T ss_pred             -----Cccceeeccccccc-------cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc
Confidence                 00111111100000       00111234677888875 56777777788888898 5677777665432111  


Q ss_pred             ----CccceEEECCCCCEEEEEcCCCcEEEE
Q 021648          229 ----NSTLEASFSPEGMFVISGSGDGSVYAW  255 (309)
Q Consensus       229 ----~~~~~~~~sp~g~~l~s~s~Dg~i~vw  255 (309)
                          ...-.++|.|+|+..++ |+-...+++
T Consensus       218 ~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  218 SKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             ccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence                11235899999855444 455555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.41  E-value=0.056  Score=47.20  Aligned_cols=133  Identities=16%  Similarity=0.146  Sum_probs=77.4

Q ss_pred             CcEEEeeCCCc-----eee--eeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEc
Q 021648          120 RTVLLWDQRAE-----KCQ--GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS  192 (309)
Q Consensus       120 g~v~~Wd~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s  192 (309)
                      |.+.++++...     +..  ......+.......-.+. +.++.++.|.+|++...+  .+.  ...........++..
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~-lv~~~g~~l~v~~l~~~~--~l~--~~~~~~~~~~i~sl~  136 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGR-LVVAVGNKLYVYDLDNSK--TLL--KKAFYDSPFYITSLS  136 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTE-EEEEETTEEEEEEEETTS--SEE--EEEEE-BSSSEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCE-EEEeecCEEEEEEccCcc--cch--hhheecceEEEEEEe
Confidence            88999998773     221  111222222222222444 777788999999987644  121  111111223455555


Q ss_pred             cCCCEEEEEeCCCcEEEEECCC-CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648          193 NDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       193 ~dg~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~  258 (309)
                      ..+.+++.|..-+.+.++.... +..+...... .....+.++.|-++++.++.+..+|.+.++...
T Consensus       137 ~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d-~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  137 VFKNYILVGDAMKSVSLLRYDEENNKLILVARD-YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EETTEEEEEESSSSEEEEEEETTTE-EEEEEEE-SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ccccEEEEEEcccCEEEEEEEccCCEEEEEEec-CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            5677999998888888764322 3323332221 223456778887777899999999999999986

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.11  Score=46.55  Aligned_cols=261  Identities=15%  Similarity=0.119  Sum_probs=152.8

Q ss_pred             eEEEEeCCCCCEE-EEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE
Q 021648           14 ISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR   92 (309)
Q Consensus        14 V~~i~~s~~~~~l-~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~   92 (309)
                      ...+...|++..+ ++-..-..+..-+...................++.++.++.++....  .++.|.+.|..+.+.+.
T Consensus        33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~--~~~~v~vid~~~~~~~~  110 (381)
T COG3391          33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTG--DSNTVSVIDTATNTVLG  110 (381)
T ss_pred             CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecC--CCCeEEEEcCcccceee
Confidence            3456677777433 33322224444444311111212222123345677777776665542  26789999977766655


Q ss_pred             EeeecccCEEEEEecCCCCeEEEecC---CCcEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEEEEE--CCEEEEEEC
Q 021648           93 YFKGHHDRVVSLSLCSSKDCFISGSL---DRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAF--GGYIRMFDA  166 (309)
Q Consensus        93 ~~~~h~~~v~~v~~~~~~~~l~s~s~---Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~i~~~d~  166 (309)
                      ...--. ....+++.++++.+..+..   ++++.+-|..+++.......... ....+.+.+..+....  ++.+.++|.
T Consensus       111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~  189 (381)
T COG3391         111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDT  189 (381)
T ss_pred             Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeC
Confidence            443222 5678899999876554433   78888888888777666444322 3466777776444443  789999996


Q ss_pred             CCCCcCC-ceEEEeCCCCCCCeEEEEccCCCEEEEE-eCC--CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE
Q 021648          167 RKYEKGP-FDIFSVGGDISDANVVKFSNDGRLMLLT-TME--GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  242 (309)
Q Consensus       167 ~~~~~~~-~~~~~~~~~~~~~~~v~~s~dg~~l~~~-~~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  242 (309)
                      ....... ...... ........+.++|+|..+-.. ..+  +.+...|..++.....-... ... ....+.++|+|++
T Consensus       190 ~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~  266 (381)
T COG3391         190 SGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKA  266 (381)
T ss_pred             CCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCE
Confidence            5432110 000001 111233567899999854443 333  69999999887766541111 111 3346899999999


Q ss_pred             EEEE-cCCCcEEEEECCCCceEEEeecCCC---CCcEEEECC
Q 021648          243 VISG-SGDGSVYAWSVRSGKEVASWMSFDT---EPPVIKWTP  280 (309)
Q Consensus       243 l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~---~v~~l~~~p  280 (309)
                      +... +..+.+.+-|..+.+..........   .+..+++.+
T Consensus       267 ~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~  308 (381)
T COG3391         267 AYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP  308 (381)
T ss_pred             EEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence            9998 4458999999988777665543332   244444444

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.30  E-value=0.0022  Score=59.35  Aligned_cols=116  Identities=17%  Similarity=0.172  Sum_probs=80.5

Q ss_pred             CeEEEEccCCCEEEEEeCCCcEEEEECCCCe---EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc-
Q 021648          186 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT---LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK-  261 (309)
Q Consensus       186 ~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~-  261 (309)
                      +..++.|++.+++|+|+..|.|.++.+..+.   ++..-.....|...|.+++|++|+..+++|..-|.|..-.+.+.. 
T Consensus        79 ~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~  158 (726)
T KOG3621|consen   79 TCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQA  158 (726)
T ss_pred             EEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhh
Confidence            3456789999999999999999999876522   111111112245778999999999999999999999998887621 


Q ss_pred             ---eEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCCCc
Q 021648          262 ---EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL  302 (309)
Q Consensus       262 ---~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~  302 (309)
                         ...++....++|..|.+ -++.+|++...-+.++..+.+..
T Consensus       159 ~~~~~q~il~~ds~IVQlD~-~q~~LLVStl~r~~Lc~tE~eti  201 (726)
T KOG3621|consen  159 FLSKSQEILSEDSEIVQLDY-LQSYLLVSTLTRCILCQTEAETI  201 (726)
T ss_pred             hccccceeeccCcceEEeec-ccceehHhhhhhhheeecchhHH
Confidence               23344455666766664 35667777766666666655443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.25  E-value=0.089  Score=43.95  Aligned_cols=197  Identities=12%  Similarity=0.147  Sum_probs=100.2

Q ss_pred             EeeecccCEEEEEecCCCCe-EEEecCCCcEEEeeCCCceeeeeeeecCc---eeEEECCCCcEEEEE-ECCEEEEEECC
Q 021648           93 YFKGHHDRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVFAVA-FGGYIRMFDAR  167 (309)
Q Consensus        93 ~~~~h~~~v~~v~~~~~~~~-l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~i~~~d~~  167 (309)
                      .+.+-.+.+.++.|.|+.+. ++.....+.|...|. +++.+..+...+.   -...+..++.++... .++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            34456667999999998664 555566777777775 4666666655441   234555555544433 26788888874


Q ss_pred             CCC----cCCceEEEeCC---CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC---CeEeEEeee-----cCCCCCccc
Q 021648          168 KYE----KGPFDIFSVGG---DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR---GTLLSTYNV-----KPVSRNSTL  232 (309)
Q Consensus       168 ~~~----~~~~~~~~~~~---~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~---~~~~~~~~~-----~~~~~~~~~  232 (309)
                      ...    ...+..+.+..   .......++++|.+..|..+-......++....   ...+.....     .......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321    11112222221   234578899999877766666665555555432   222211110     011223456


Q ss_pred             eEEECCC-CCEEEEEcCCCcEEEEECCCCceEEEeecCC---------CCCcEEEECCCeeEEEEccce
Q 021648          233 EASFSPE-GMFVISGSGDGSVYAWSVRSGKEVASWMSFD---------TEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       233 ~~~~sp~-g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~---------~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      .+.++|. |.+++-......+-++| .+|+.+..+.--.         .+.=.|+|.|+|++.++.-..
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN  242 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN  242 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence            7889996 56666677778899999 5777666543221         134459999999888776443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.18  E-value=0.15  Score=45.16  Aligned_cols=226  Identities=12%  Similarity=0.172  Sum_probs=114.1

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccc-----------------cceeEEEEecCCCEEEEEcC
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-----------------YGVDLVCFTSHPTTVIYSSK   73 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~~~~~s~   73 (309)
                      ...+....|||+|+.+|-. .|+.|-+++..++...+.-....                 ..-..+.|+|+++++++...
T Consensus        42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            4578889999999999888 47899999987775543222110                 01245778999988876542


Q ss_pred             CCC-------------------------------Cc--eeEEEEccCCceEEE--e---eecccCEEEEEecCCCCeEE-
Q 021648           74 NGW-------------------------------DE--SLRLLSLHDNKYLRY--F---KGHHDRVVSLSLCSSKDCFI-  114 (309)
Q Consensus        74 ~g~-------------------------------d~--~i~~~d~~~~~~~~~--~---~~h~~~v~~v~~~~~~~~l~-  114 (309)
                      +.-                               +.  .+.++|+++++....  .   ..-..-+..+.|.++++.|+ 
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            210                               11  334556666654221  1   12234577888888887333 


Q ss_pred             -EecCCC---cEEEeeCCCceeeeeeeecC------ceeEEE--CCCCcEEE-EEECCE--EEEEECCCCCcCCceEEEe
Q 021648          115 -SGSLDR---TVLLWDQRAEKCQGLLRVQG------RPAAAY--DDQGLVFA-VAFGGY--IRMFDARKYEKGPFDIFSV  179 (309)
Q Consensus       115 -s~s~Dg---~v~~Wd~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~-~~~~~~--i~~~d~~~~~~~~~~~~~~  179 (309)
                       ..+.+.   .+.+.|.+++.+........      .....+  .+...++- .-.+|.  |.+++.....     ...+
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-----~~~l  275 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-----PRQL  275 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-----EEES
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-----eecc
Confidence             223333   34455666554433222111      112222  23333333 334554  4444443221     1122


Q ss_pred             CCCCCCC-eEEEEccCCCEEE-EEeC----CCcEEEEECC-CCeEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648          180 GGDISDA-NVVKFSNDGRLML-LTTM----EGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  246 (309)
Q Consensus       180 ~~~~~~~-~~v~~s~dg~~l~-~~~~----dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~  246 (309)
                      ....-.| ..+.++++++.+. ++..    ..+++..++. .+.. ..+....   .....+.|||+|++++-.
T Consensus       276 T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~---~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  276 TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCED---GDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTS---STTEEEEE-TTSSEEEEE
T ss_pred             ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCC---CCceEEEECCCCCEEEEE
Confidence            2222334 3467788876654 3433    2356666666 4443 3333211   111478999999988654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.17  E-value=0.11  Score=43.44  Aligned_cols=199  Identities=14%  Similarity=0.169  Sum_probs=110.5

Q ss_pred             ccceEecCCCcc-eEEEEeCCCCCEEEEeeCCC--cEEEEEcCCCceeeeeecc-ccceeEEEEecCCCEEEEEcCCCCC
Q 021648            2 EVGMSFRDYNGR-ISSMDFHKSSSYLVTASDDE--SIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWD   77 (309)
Q Consensus         2 ~~~~~~~~h~~~-V~~i~~s~~~~~l~t~s~D~--~v~iWd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~s~~g~d   77 (309)
                      +++.++...... -..+.|..+|.++-|.|.-|  .|+.+|+.+|+.++...-. .+--..++...+  .++.-.  -.+
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLT--Wk~  109 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLT--WKE  109 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEE--SSS
T ss_pred             EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEE--ecC
Confidence            344555432333 34788878888888888766  8999999999877554332 222333444432  333222  227


Q ss_pred             ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEE
Q 021648           78 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF  157 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (309)
                      +...+||.++-+.+..+. ..+.=+.++  .|++.|+.+.....+.++|+++-+....+.+.                 .
T Consensus       110 ~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-----------------~  169 (264)
T PF05096_consen  110 GTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-----------------D  169 (264)
T ss_dssp             SEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-----------------E
T ss_pred             CeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-----------------E
Confidence            789999999888888775 446678887  45666666655667888887665443333221                 1


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC-------C---
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-------S---  227 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-------~---  227 (309)
                      ++.            +         ...++.+.+- +|...|---....|...|+.+|.+...+.....       .   
T Consensus       170 ~g~------------p---------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~  227 (264)
T PF05096_consen  170 NGR------------P---------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQ  227 (264)
T ss_dssp             TTE------------E------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST-
T ss_pred             CCE------------E---------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhccccccccc
Confidence            110            0         0112222222 566666666667777888888888876643211       0   


Q ss_pred             --CCccceEEECCCC-CEEEEE
Q 021648          228 --RNSTLEASFSPEG-MFVISG  246 (309)
Q Consensus       228 --~~~~~~~~~sp~g-~~l~s~  246 (309)
                        ......+||.|.+ ++++||
T Consensus       228 ~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  228 PDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             -TTS-EEEEEEETTTTEEEEEE
T ss_pred             ccCCeeEeEeEeCCCCEEEEEe
Confidence              1223468998865 455555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.13  E-value=0.00019  Score=65.39  Aligned_cols=193  Identities=16%  Similarity=0.235  Sum_probs=111.3

Q ss_pred             CEEEEEecCCCC--eEEEecCCCcEEEeeCCCceeee-e-eeecCcee--EEECC-CCcEEEEEE-----CCEEEEEECC
Q 021648          100 RVVSLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQG-L-LRVQGRPA--AAYDD-QGLVFAVAF-----GGYIRMFDAR  167 (309)
Q Consensus       100 ~v~~v~~~~~~~--~l~s~s~Dg~v~~Wd~~~~~~~~-~-~~~~~~~~--~~~~~-~~~~~~~~~-----~~~i~~~d~~  167 (309)
                      .+.+++...+.+  .++.|..+|.|-+=..+...-.. . .......+  .++.+ +...++++.     +..+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            456666655433  67788889999887766443321 1 11111111  22222 234555554     4689999987


Q ss_pred             CCCcCCceEEEeC-CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe-EeEEeeecCCCCCccceEEECC-CCCEEE
Q 021648          168 KYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSP-EGMFVI  244 (309)
Q Consensus       168 ~~~~~~~~~~~~~-~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~sp-~g~~l~  244 (309)
                      ..-..++.-..+. +...+.+++|+-.+.+++.+|...+.++++|++... ....+.     +..+..+...| .+.|++
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn-----Tk~vqG~tVdp~~~nY~c  212 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN-----TKYVQGITVDPFSPNYFC  212 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh-----hhhcccceecCCCCCcee
Confidence            6533333322222 244566788888999999999999999999987322 111222     12333466777 677877


Q ss_pred             EEcCCCcEEEEEC-CCCc-eEEEee----cCCCCCcEEEECCCee-EEEEccce-EEEeeec
Q 021648          245 SGSGDGSVYAWSV-RSGK-EVASWM----SFDTEPPVIKWTPGSL-MFVTGSSE-LSFWIPD  298 (309)
Q Consensus       245 s~s~Dg~i~vwd~-~~~~-~~~~~~----~~~~~v~~l~~~p~~~-~l~s~~~d-~~~~~~~  298 (309)
                      +-+ ||.|-+||. .+-+ ++..+.    ....++..++|.|... ++++-..| ..+..-+
T Consensus       213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd  273 (783)
T KOG1008|consen  213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD  273 (783)
T ss_pred             ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence            766 999999994 2211 222221    1223588999999754 44444444 3443333

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.11  E-value=0.029  Score=40.19  Aligned_cols=100  Identities=17%  Similarity=0.256  Sum_probs=60.5

Q ss_pred             eEEEEeC---CCC-CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648           14 ISSMDFH---KSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   89 (309)
Q Consensus        14 V~~i~~s---~~~-~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~   89 (309)
                      |+++++.   -|| +-|+.||.|..||+|+-+  +.+..+.... .+..++-... ..++++..   +++|.+|+-.  +
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~-~v~~L~~~~~-~~F~Y~l~---NGTVGvY~~~--~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD-KVTSLCSLGG-GRFAYALA---NGTVGVYDRS--Q   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc-ceEEEEEcCC-CEEEEEec---CCEEEEEeCc--c
Confidence            5666654   343 579999999999999854  4555554433 3555555444 45666654   5678888642  2


Q ss_pred             eEEEeeecccCEEEEEecC---CCC-eEEEecCCCcEE
Q 021648           90 YLRYFKGHHDRVVSLSLCS---SKD-CFISGSLDRTVL  123 (309)
Q Consensus        90 ~~~~~~~h~~~v~~v~~~~---~~~-~l~s~s~Dg~v~  123 (309)
                      .++..+. +..+.++.+..   ||. .|++|=.+|.|-
T Consensus        73 RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3344432 22366665543   332 688887777764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.10  E-value=0.14  Score=43.46  Aligned_cols=229  Identities=11%  Similarity=0.154  Sum_probs=116.9

Q ss_pred             CCCCCEEEEeeCCCcEEEEEcCC-CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe----
Q 021648           20 HKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF----   94 (309)
Q Consensus        20 s~~~~~l~t~s~D~~v~iWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~----   94 (309)
                      ...++.|+.|..|| +.+++... ....+.....  .|..+...+.-+.++.-+    |+.+.++++..-......    
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~--~I~ql~vl~~~~~llvLs----d~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS--SITQLSVLPELNLLLVLS----DGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccceeEeecc--eEEEEEEecccCEEEEEc----CCccEEEEchhhcccccccccc
Confidence            34578899998888 88888832 2222222222  277777777777666655    678999998653322210    


Q ss_pred             ----------eecccCEEEEE--ecCCCCeEEEecCCCcEEEeeCCCc-----eeeeeeeecCcee-EEECCCCcEEEEE
Q 021648           95 ----------KGHHDRVVSLS--LCSSKDCFISGSLDRTVLLWDQRAE-----KCQGLLRVQGRPA-AAYDDQGLVFAVA  156 (309)
Q Consensus        95 ----------~~h~~~v~~v~--~~~~~~~l~s~s~Dg~v~~Wd~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~  156 (309)
                                ......+...+  -...+...+.....++|.+|.....     +....+.++..+. ..+.  +..++.+
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~  154 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVG  154 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEE
Confidence                      01122233333  1123334444445668888876543     2223333333222 2222  3445555


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCC----------CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGG----------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  226 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~----------~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  226 (309)
                      ..+...+.|+.+....  .+.....          ...++..+..+ ++++|++.  |..-...| ..|+.......  .
T Consensus       155 ~~~~f~~idl~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i--~  226 (275)
T PF00780_consen  155 TSKGFYLIDLNTGSPS--ELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVN-KNGEPSRKSTI--Q  226 (275)
T ss_pred             eCCceEEEecCCCCce--EEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEc-CCCCcCcccEE--E
Confidence            5666777777643321  1221111          11223333333 35666543  22222333 33443331111  0


Q ss_pred             CCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeec
Q 021648          227 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS  268 (309)
Q Consensus       227 ~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~  268 (309)
                      -...+..+++.  ..||+..+.++ |.||++.+++.+.++..
T Consensus       227 W~~~p~~~~~~--~pyli~~~~~~-iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  227 WSSAPQSVAYS--SPYLIAFSSNS-IEVRSLETGELVQTIPL  265 (275)
T ss_pred             cCCchhEEEEE--CCEEEEECCCE-EEEEECcCCcEEEEEEC
Confidence            11233445553  34887777655 99999999998887753

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.0031  Score=61.06  Aligned_cols=111  Identities=18%  Similarity=0.291  Sum_probs=77.6

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee
Q 021648          188 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM  267 (309)
Q Consensus       188 ~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~  267 (309)
                      .++..-.+..++.+++.|+|-.+|... ++ ..+.-......++.+++|+.||++++.|-.+|.|.+||+.+++....+.
T Consensus        92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~-nL-~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~  169 (1206)
T KOG2079|consen   92 VISSAIVVVPIVIGTSHGHVLLSDMTG-NL-GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT  169 (1206)
T ss_pred             eeeeeeeeeeEEEEcCchhhhhhhhhc-cc-chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence            333333566788899999999888653 21 1111111234678899999999999999999999999999998888887


Q ss_pred             cCCCCCcEEE---ECCCeeEEEEccceEEEeeecCC
Q 021648          268 SFDTEPPVIK---WTPGSLMFVTGSSELSFWIPDLS  300 (309)
Q Consensus       268 ~~~~~v~~l~---~~p~~~~l~s~~~d~~~~~~~~~  300 (309)
                      -|.++.+.+-   +..++..+.++.....+|.-...
T Consensus       170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~lv~n  205 (1206)
T KOG2079|consen  170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKLVFN  205 (1206)
T ss_pred             ecCCccceEEEEEEeCCCcEEEEccCCCceEEEEec
Confidence            7776665543   44455567776666777755433

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.01  E-value=0.15  Score=42.18  Aligned_cols=132  Identities=13%  Similarity=0.123  Sum_probs=84.8

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCE
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV  101 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v  101 (309)
                      ..+++-||.-+.++--|..+|+.+..-. +..  +.+-++. -+++++.+.-   .+.+.+.+.++|+..+.+..-. .|
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~R--iE~sa~v-vgdfVV~GCy---~g~lYfl~~~tGs~~w~f~~~~-~v   95 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVR--IECSAIV-VGDFVVLGCY---SGGLYFLCVKTGSQIWNFVILE-TV   95 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCce--eeeeeEE-ECCEEEEEEc---cCcEEEEEecchhheeeeeehh-hh
Confidence            3578889999999999999998875422 222  2222221 2456776653   5678888999997777665432 22


Q ss_pred             EE-EEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCcee--EEECC-CCcEEEEEECCEE
Q 021648          102 VS-LSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA--AAYDD-QGLVFAVAFGGYI  161 (309)
Q Consensus       102 ~~-v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~i  161 (309)
                      .. ....+++..+..++.|++...-|+++..++...+..+...  .+..+ ++.++++...|.+
T Consensus        96 k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen   96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence            22 2335678899999999999999999988876665544322  12223 4445555544443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.01  E-value=0.047  Score=49.41  Aligned_cols=129  Identities=19%  Similarity=0.262  Sum_probs=81.2

Q ss_pred             CceeEEEEccCCceEEEeeecccCEEEEEecCCCCe-------EEEecCCCcEEEeeCCCceeeeeeeecC--------c
Q 021648           77 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC-------FISGSLDRTVLLWDQRAEKCQGLLRVQG--------R  141 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~-------l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--------~  141 (309)
                      ...+.-.|++.|+.+..-+-|.+ |+-+.+.|+.+.       -+.|-.|..|.-||+|-+........+.        .
T Consensus       355 ~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF  433 (644)
T KOG2395|consen  355 QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF  433 (644)
T ss_pred             cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccc
Confidence            35677789999999888887777 788888887652       2345568899999998543311111111        1


Q ss_pred             eeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEE
Q 021648          142 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  211 (309)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d  211 (309)
                      .+.+--.+|.++.++.+|.||+||-. ..+.+..+..+   ...|.-|..+.||+++++.+ +-.+.+.|
T Consensus       434 sc~aTT~sG~IvvgS~~GdIRLYdri-~~~AKTAlPgL---G~~I~hVdvtadGKwil~Tc-~tyLlLi~  498 (644)
T KOG2395|consen  434 SCFATTESGYIVVGSLKGDIRLYDRI-GRRAKTALPGL---GDAIKHVDVTADGKWILATC-KTYLLLID  498 (644)
T ss_pred             ceeeecCCceEEEeecCCcEEeehhh-hhhhhhccccc---CCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence            22333456778878889999999942 11111111122   24677888999999987654 44455555

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.87  E-value=0.22  Score=41.74  Aligned_cols=181  Identities=16%  Similarity=0.152  Sum_probs=112.1

Q ss_pred             EEEEEecCCCCeEEEecCCC--cEEEeeCCCceeeeeeeecCce---eEEECCCCcEEEEE-ECCEEEEEECCCCCcCCc
Q 021648          101 VVSLSLCSSKDCFISGSLDR--TVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPF  174 (309)
Q Consensus       101 v~~v~~~~~~~~l~s~s~Dg--~v~~Wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~  174 (309)
                      .-++.|..++..+-|.+.-|  .|+.+|+.+++......++...   ..... .+.++-.. .++...+||..+++.  .
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~--~  123 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK--I  123 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE--E
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceE--E
Confidence            45677777787888887766  8899999998876655544321   11222 23444455 368889999876542  2


Q ss_pred             eEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecC--CCCCccceEEECCCCCEEEEEcCCCcE
Q 021648          175 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP--VSRNSTLEASFSPEGMFVISGSGDGSV  252 (309)
Q Consensus       175 ~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~sp~g~~l~s~s~Dg~i  252 (309)
                      ..+...+   .-..++  .||+.|+......+++.+|..+-+...+.....  .....+..+.|- +|...|=.-....|
T Consensus       124 ~~~~y~~---EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I  197 (264)
T PF05096_consen  124 GTFPYPG---EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRI  197 (264)
T ss_dssp             EEEE-SS---S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred             EEEecCC---cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence            2233322   234455  578888888888899999998877777665431  112234556664 78888888888889


Q ss_pred             EEEECCCCceEEEee-----c-------C---CCCCcEEEECCC-eeEEEEccc
Q 021648          253 YAWSVRSGKEVASWM-----S-------F---DTEPPVIKWTPG-SLMFVTGSS  290 (309)
Q Consensus       253 ~vwd~~~~~~~~~~~-----~-------~---~~~v~~l~~~p~-~~~l~s~~~  290 (309)
                      ...|..+|+.+..+-     .       .   ..-.+.|||.|. +++++||-.
T Consensus       198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            999999998766541     0       0   123577999885 577888754

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.86  E-value=0.097  Score=49.36  Aligned_cols=113  Identities=11%  Similarity=0.139  Sum_probs=81.3

Q ss_pred             CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE--CCCCCEEEEEcCCCcEEEEECCC---
Q 021648          185 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF--SPEGMFVISGSGDGSVYAWSVRS---  259 (309)
Q Consensus       185 ~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--sp~g~~l~s~s~Dg~i~vwd~~~---  259 (309)
                      ....+..|+-++..+..+...++.|||...+.+..+-..  .....|.++.|  .|||+.+++.|-...|.++--..   
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            345566677777777766777899999988875544332  23456777776  57999999999999999986421   


Q ss_pred             ------CceEEE--eecCC-CCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          260 ------GKEVAS--WMSFD-TEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       260 ------~~~~~~--~~~~~-~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                            ...++.  +..|+ .+|.+..|.++|.+++..+....++...+
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~~  157 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKWL  157 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCCc
Confidence                  223333  23444 57899999999999999988888765544

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.85  E-value=0.45  Score=45.16  Aligned_cols=210  Identities=15%  Similarity=0.129  Sum_probs=104.6

Q ss_pred             CCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcC-----CCCCceeEEEEccCCceEEEeeecccCEEEEEe
Q 021648           32 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-----NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSL  106 (309)
Q Consensus        32 D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~-----~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~  106 (309)
                      ||.+.--+-.....+.-..+....+...+++++++.+++...     +.....+.+.+. .++......+.  ....-.|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceE
Confidence            666644432222222222222234667889999998877652     112234555554 23333333333  3677789


Q ss_pred             cCCCCeEEEecCCCc-EEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCC
Q 021648          107 CSSKDCFISGSLDRT-VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD  185 (309)
Q Consensus       107 ~~~~~~l~s~s~Dg~-v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  185 (309)
                      +|||+.+++.+.... +++.+...                            .+.+.+.++...+..   . .   ....
T Consensus       405 spDG~~lw~v~dg~~~~~v~~~~~----------------------------~gql~~~~vd~ge~~---~-~---~~g~  449 (591)
T PRK13616        405 SLDADAVWVVVDGNTVVRVIRDPA----------------------------TGQLARTPVDASAVA---S-R---VPGP  449 (591)
T ss_pred             CCCCCceEEEecCcceEEEeccCC----------------------------CceEEEEeccCchhh---h-c---cCCC
Confidence            999888888763322 22221100                            112222222211110   0 1   1135


Q ss_pred             CeEEEEccCCCEEEEEeCCCcEEE---EECCCCeE-e-EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC-
Q 021648          186 ANVVKFSNDGRLMLLTTMEGHIHV---LDSFRGTL-L-STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS-  259 (309)
Q Consensus       186 ~~~v~~s~dg~~l~~~~~dg~v~i---~d~~~~~~-~-~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~-  259 (309)
                      +..+.+||||..++... +++|++   -....|.. + ............+..+.|.+++..+ .+..++.-.+|.+.- 
T Consensus       450 Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vD  527 (591)
T PRK13616        450 ISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLD  527 (591)
T ss_pred             cCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecC
Confidence            78899999999988765 578877   44444541 1 1111112222334678999998854 555555455555421 


Q ss_pred             CceEEEeec--CCCCCcEEEECCC
Q 021648          260 GKEVASWMS--FDTEPPVIKWTPG  281 (309)
Q Consensus       260 ~~~~~~~~~--~~~~v~~l~~~p~  281 (309)
                      |.....+..  ....+..|+=+|+
T Consensus       528 G~~~~~~~~~n~~~~v~~vaa~~~  551 (591)
T PRK13616        528 GSNSDALPSRNLSAPVVAVAASPS  551 (591)
T ss_pred             CccccccCCCCccCceEEEecCCc
Confidence            222111122  2456667776664

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.84  E-value=0.35  Score=43.80  Aligned_cols=192  Identities=16%  Similarity=0.212  Sum_probs=99.3

Q ss_pred             EEeCCCCCEEEEeeCC-----------CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648           17 MDFHKSSSYLVTASDD-----------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus        17 i~~s~~~~~l~t~s~D-----------~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      ++.+|.|..+|..-.+           ..|+||+. .|+.+..+.-....+-.+.|+.+.+.++...    |+.++++|+
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~----dG~v~vy~~  108 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQS----DGTVRVYDL  108 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEc----CCEEEEEeC
Confidence            4556666666665443           15889986 4777777665556678888887655555543    789999998


Q ss_pred             cCCc------eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEee-CCCceeeeee-eecCc-------e----eEEE
Q 021648           86 HDNK------YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD-QRAEKCQGLL-RVQGR-------P----AAAY  146 (309)
Q Consensus        86 ~~~~------~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd-~~~~~~~~~~-~~~~~-------~----~~~~  146 (309)
                      ....      .+....-....+....+..+|-.+++.  ++.+.+-+ .........+ ..+..       .    ...+
T Consensus       109 ~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l  186 (410)
T PF04841_consen  109 FGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL  186 (410)
T ss_pred             CCceeechhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence            6333      111111112222222333344333443  33333322 2211010000 00000       0    0011


Q ss_pred             CC-CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648          147 DD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  223 (309)
Q Consensus       147 ~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~  223 (309)
                      .. ....+....++.+.+.+....+.       +. ...++..+++||+|+++|.-..+|++.+....-.+.+.++..
T Consensus       187 ~~~~~~~i~~~~g~~i~~i~~~~~~~-------i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~  256 (410)
T PF04841_consen  187 SSDRVVEILLANGETIYIIDENSFKQ-------ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT  256 (410)
T ss_pred             ecCcceEEEEecCCEEEEEEcccccc-------cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence            11 22233334455566444322110       11 124678899999999999999999999887655555555543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.75  E-value=0.32  Score=42.08  Aligned_cols=217  Identities=17%  Similarity=0.184  Sum_probs=110.0

Q ss_pred             cCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee--cC
Q 021648           63 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--QG  140 (309)
Q Consensus        63 ~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~--~~  140 (309)
                      ++...++++--  ..+.|.-|+.++++. ..+. +.+.+.++.....+..|+++.  .-+.+++++++.....+..  ..
T Consensus        34 ~~~~~L~w~DI--~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~  107 (307)
T COG3386          34 PDRGALLWVDI--LGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDG  107 (307)
T ss_pred             CCCCEEEEEeC--CCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCC
Confidence            34444444422  245677777765532 2222 233334444434444566653  3445666654443222211  11


Q ss_pred             -----ceeEEECCCCcEEEEEEC------------CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEE-e
Q 021648          141 -----RPAAAYDDQGLVFAVAFG------------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-T  202 (309)
Q Consensus       141 -----~~~~~~~~~~~~~~~~~~------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~-~  202 (309)
                           -+-....+++.+..+...            +.++.+|....     ....+..+..--+.++||||++.+..+ +
T Consensus       108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDLTIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcEEecCceEECCCCCEEEEEeC
Confidence                 112333444544443322            33444442110     011111223345789999999665554 5


Q ss_pred             CCCcEEEEECCC--CeEeEE--eeecCCCCCccceEEECCCCCEEEEEcCCC-cEEEEECCCCceEEEeecCCCCCcEEE
Q 021648          203 MEGHIHVLDSFR--GTLLST--YNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVYAWSVRSGKEVASWMSFDTEPPVIK  277 (309)
Q Consensus       203 ~dg~v~i~d~~~--~~~~~~--~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg-~i~vwd~~~~~~~~~~~~~~~~v~~l~  277 (309)
                      ..+.|+-|+...  +.....  +-......+..=.++...+|.+.+++-.+| .|.+|+.. ++++....-.-..+++++
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~  261 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA  261 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence            568888887642  111110  111111223333456667888886555554 89999998 888887765546888999


Q ss_pred             ECC-C-eeEEEEccce
Q 021648          278 WTP-G-SLMFVTGSSE  291 (309)
Q Consensus       278 ~~p-~-~~~l~s~~~d  291 (309)
                      |-- + ..++++....
T Consensus       262 FgG~~~~~L~iTs~~~  277 (307)
T COG3386         262 FGGPDLNTLYITSARS  277 (307)
T ss_pred             EeCCCcCEEEEEecCC
Confidence            855 3 3566665543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.75  E-value=0.069  Score=51.70  Aligned_cols=92  Identities=12%  Similarity=0.133  Sum_probs=60.9

Q ss_pred             EEEEeCCCcEEEEECCCCe--EeEEeeecCC-CCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCc
Q 021648          198 MLLTTMEGHIHVLDSFRGT--LLSTYNVKPV-SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP  274 (309)
Q Consensus       198 l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~-~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~  274 (309)
                      ...|-.+..+..||++-..  ++.. ..+.. ......+++=+.+ .+||.||.+|.||+||.-..+.-..+++...+|.
T Consensus       545 tflGls~n~lfriDpR~~~~k~v~~-~~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~  622 (794)
T PF08553_consen  545 TFLGLSDNSLFRIDPRLSGNKLVDS-QSKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPII  622 (794)
T ss_pred             eEEEECCCceEEeccCCCCCceeec-cccccccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCee
Confidence            3456677788889987632  2221 11111 2223334444444 5889999999999999643333334678889999


Q ss_pred             EEEECCCeeEEEEccce
Q 021648          275 VIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       275 ~l~~~p~~~~l~s~~~d  291 (309)
                      .|..+.||++++..+..
T Consensus       623 ~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  623 GIDVTADGKWILATCKT  639 (794)
T ss_pred             EEEecCCCcEEEEeecc
Confidence            99999999988777764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.73  E-value=0.43  Score=43.26  Aligned_cols=239  Identities=13%  Similarity=0.076  Sum_probs=112.2

Q ss_pred             eEEEEecCCCEEEEEc-CCCC-CceeEEEEccCCceEEEe-eecccCEEEEEecCCCCeEEEecCCC-----------cE
Q 021648           57 DLVCFTSHPTTVIYSS-KNGW-DESLRLLSLHDNKYLRYF-KGHHDRVVSLSLCSSKDCFISGSLDR-----------TV  122 (309)
Q Consensus        57 ~~~~~~~~~~~~~~~s-~~g~-d~~i~~~d~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~s~Dg-----------~v  122 (309)
                      ...+++|++++++++. .+|. ..+++++|+++++.+... ..- . -..+.|.++++.|+-...|.           .|
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-K-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-E-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-c-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            3578899999888763 3332 267999999999765432 221 1 12389999988765554333           37


Q ss_pred             EEeeCCCceee--eeeeecC----ceeEEECCCCcEEEEE-E---C-CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEE
Q 021648          123 LLWDQRAEKCQ--GLLRVQG----RPAAAYDDQGLVFAVA-F---G-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKF  191 (309)
Q Consensus       123 ~~Wd~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~-~---~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~  191 (309)
                      .+|.+.+....  .++....    ......+.++.++... .   + ..+.+.|+.....+......+......+.....
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            78887655433  1222211    1233445555554433 2   2 457777776531111111112112223333333


Q ss_pred             ccCCCEEEEEe---CCCcEEEEECCCCeE--eEEeeecCCCCCccceEEECCCCCEEEEE-cCCC--cEEEEECCCCceE
Q 021648          192 SNDGRLMLLTT---MEGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDG--SVYAWSVRSGKEV  263 (309)
Q Consensus       192 s~dg~~l~~~~---~dg~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~sp~g~~l~s~-s~Dg--~i~vwd~~~~~~~  263 (309)
                      ..++.+++...   .++.|.-.++.....  ....-..  +...+.-..+...+++|+.. -.++  .|+++++..+...
T Consensus       285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~--~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~  362 (414)
T PF02897_consen  285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP--EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKES  362 (414)
T ss_dssp             EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred             ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcC--CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEE
Confidence            33444444332   235666667665542  1111111  11212223344444455444 4444  7899999834444


Q ss_pred             EEeecC-CCCCcEEEECCCe-eEEEEccce---EEEeeecC
Q 021648          264 ASWMSF-DTEPPVIKWTPGS-LMFVTGSSE---LSFWIPDL  299 (309)
Q Consensus       264 ~~~~~~-~~~v~~l~~~p~~-~~l~s~~~d---~~~~~~~~  299 (309)
                      .....- .+.+..+...+++ .++.+.++-   -.+|..++
T Consensus       363 ~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~  403 (414)
T PF02897_consen  363 REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDL  403 (414)
T ss_dssp             EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEET
T ss_pred             eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence            333221 2234455555544 344444331   55555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.72  E-value=0.27  Score=40.78  Aligned_cols=87  Identities=9%  Similarity=0.004  Sum_probs=61.1

Q ss_pred             EecCCCcceEEEEeCC-------------------CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC
Q 021648            6 SFRDYNGRISSMDFHK-------------------SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT   66 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~-------------------~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~   66 (309)
                      ....|++.+.++.+-.                   -|++++.|.+.+.+-+-++.+|+.+..+.....--......+++.
T Consensus        27 ~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~g  106 (354)
T KOG4649|consen   27 VIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGG  106 (354)
T ss_pred             EEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCc
Confidence            3456777777765432                   156788999999999999999988877654432112234456676


Q ss_pred             EEEEEcCCCCCceeEEEEccCCceEEEee
Q 021648           67 TVIYSSKNGWDESLRLLSLHDNKYLRYFK   95 (309)
Q Consensus        67 ~~~~~s~~g~d~~i~~~d~~~~~~~~~~~   95 (309)
                      .+..++.   |++....|..+..++...+
T Consensus       107 lIycgsh---d~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen  107 LIYCGSH---DGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             eEEEecC---CCcEEEecccccceEEecc
Confidence            7777764   8899999999888776654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.013  Score=53.72  Aligned_cols=91  Identities=18%  Similarity=0.301  Sum_probs=66.5

Q ss_pred             CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccc-eEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 021648          185 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSPEGMFVISGSGDGSVYAWSVRSGKEV  263 (309)
Q Consensus       185 ~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~  263 (309)
                      .+.-+.++|.-..+|.+..+|.|.+.... -..+-++.   .+...+. +++|.|||+.||.|-.||+|++-|+.++..+
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip---~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP---IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc---CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            35567789999999999999988776543 23333332   2334444 8999999999999999999999999999887


Q ss_pred             EEee-cCCCCCcEEEEC
Q 021648          264 ASWM-SFDTEPPVIKWT  279 (309)
Q Consensus       264 ~~~~-~~~~~v~~l~~~  279 (309)
                      ..+. .....|.+.-|.
T Consensus        98 ~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWD  114 (665)
T ss_pred             eccccccccchheeecc
Confidence            7631 234466777675

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.72  E-value=0.13  Score=36.94  Aligned_cols=99  Identities=12%  Similarity=0.235  Sum_probs=54.5

Q ss_pred             EEEEEecC---CC-CeEEEecCCCcEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEEEEECCEEEEEECCCCCcCCce
Q 021648          101 VVSLSLCS---SK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD  175 (309)
Q Consensus       101 v~~v~~~~---~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  175 (309)
                      |++++++.   || +.|+.||.|..||+|+-  ......+..... ........+.+..+-.+|+|.+|+-..      .
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~------R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ------R   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcc------e
Confidence            56666653   33 47999999999999973  334444433332 233444445555555678888876321      1


Q ss_pred             EEEeCCCCCCCeEEE-Ecc--CC-CEEEEEeCCCcEE
Q 021648          176 IFSVGGDISDANVVK-FSN--DG-RLMLLTTMEGHIH  208 (309)
Q Consensus       176 ~~~~~~~~~~~~~v~-~s~--dg-~~l~~~~~dg~v~  208 (309)
                      ++.+..... +.+++ +..  || ..|++|-.+|.|-
T Consensus        74 lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            222222222 33332 333  33 3577887888763

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.67  E-value=0.0077  Score=48.55  Aligned_cols=103  Identities=17%  Similarity=0.223  Sum_probs=65.3

Q ss_pred             CCEEEEeeCCCcEEEEEcCC-CceeeeeeccccceeEEEEecCCCE--EEEEcCCCCCceeEEEEccCCceEEEeeecc-
Q 021648           23 SSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRLLSLHDNKYLRYFKGHH-   98 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~-   98 (309)
                      +.-++.|+.|+.|.+|.... |.....+......  ..+..|.+..  +.+..  .+|+.||.|+++-++.+....+|. 
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~--i~~~Ip~~~~~~~~c~~--~~dg~ir~~n~~p~k~~g~~g~h~~  145 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES--IDLGIPNGRDSSLGCVG--AQDGRIRACNIKPNKVLGYVGQHNF  145 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhccccc--ceeccccccccceeEEe--ccCCceeeeccccCceeeeeccccC
Confidence            35678888999999998751 2211111111111  1223343333  33332  458999999999988888777787 


Q ss_pred             cCEEEEEecCCCCeEEEe--cCCCcEEEeeCCC
Q 021648           99 DRVVSLSLCSSKDCFISG--SLDRTVLLWDQRA  129 (309)
Q Consensus        99 ~~v~~v~~~~~~~~l~s~--s~Dg~v~~Wd~~~  129 (309)
                      .++.....+..++.++.+  |.|..++.|+++.
T Consensus       146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            566666666666677777  7788888887654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.65  E-value=0.0082  Score=35.95  Aligned_cols=33  Identities=15%  Similarity=0.357  Sum_probs=29.3

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT   44 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~   44 (309)
                      ...|..++|+|..+++|.|..||.|.++.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            457999999999999999999999999988 443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.62  E-value=0.42  Score=41.73  Aligned_cols=216  Identities=13%  Similarity=0.137  Sum_probs=108.0

Q ss_pred             cEEEEEcCCCceeeeeecccc-ceeEEE---EecC----CCEEEEEcCC--C----CC-ceeEEEEccCC----ceEEEe
Q 021648           34 SIRLYDVTAATCLKTINSKKY-GVDLVC---FTSH----PTTVIYSSKN--G----WD-ESLRLLSLHDN----KYLRYF   94 (309)
Q Consensus        34 ~v~iWd~~~~~~~~~~~~~~~-~v~~~~---~~~~----~~~~~~~s~~--g----~d-~~i~~~d~~~~----~~~~~~   94 (309)
                      .|+|.|..+.+.+.++.-.+. .+.+++   +..+    ..+++.+..-  +    .. |.+.++++...    ..++.+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            578888888777766554332 233322   3222    2355544311  1    12 78999999874    223322


Q ss_pred             --eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCce-eeeeeee--cCceeEEECCCCcEEEEEECCEEEEEECCCC
Q 021648           95 --KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRV--QGRPAAAYDDQGLVFAVAFGGYIRMFDARKY  169 (309)
Q Consensus        95 --~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  169 (309)
                        ....++|.+++-. +++ |+.+. .+.+.+|++...+ ....-..  +............++.+.....+.++..+. 
T Consensus        83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~-  158 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE-  158 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET-
T ss_pred             EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc-
Confidence              3457889998866 444 44443 5899999987766 3222111  111111111233444443445566553322 


Q ss_pred             CcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-------C--eEeEEeeecCCCCCccceE---EEC
Q 021648          170 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-------G--TLLSTYNVKPVSRNSTLEA---SFS  237 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-------~--~~~~~~~~~~~~~~~~~~~---~~s  237 (309)
                      +...+....-......+.++.|-+|++.++.+..+|.+.++....       +  .+......+  ....+..+   ++.
T Consensus       159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~--lg~~v~~~~~~~l~  236 (321)
T PF03178_consen  159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH--LGDIVNSFRRGSLI  236 (321)
T ss_dssp             TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE---SS-EEEEEE--SS
T ss_pred             cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE--CCCccceEEEEEee
Confidence            111222222222233466777776777999999999999987542       2  222222221  11233333   344


Q ss_pred             C--CCC------EEEEEcCCCcEEEE
Q 021648          238 P--EGM------FVISGSGDGSVYAW  255 (309)
Q Consensus       238 p--~g~------~l~s~s~Dg~i~vw  255 (309)
                      |  .+.      .++-++.+|.|.+.
T Consensus       237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  237 PRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ecCCCCcccccceEEEEecCCEEEEE
Confidence            5  222      47888889988843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.59  E-value=0.14  Score=46.40  Aligned_cols=106  Identities=12%  Similarity=0.160  Sum_probs=68.3

Q ss_pred             CeEEEEccCCCE-------EEEEeCCCcEEEEECCCCe--EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEE
Q 021648          186 ANVVKFSNDGRL-------MLLTTMEGHIHVLDSFRGT--LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS  256 (309)
Q Consensus       186 ~~~v~~s~dg~~-------l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd  256 (309)
                      ++.+.+.|+.+.       -+.|-.|..|.-||++-..  .+..-+.+........++.-.-...+|+.||.+|.||+||
T Consensus       378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYd  457 (644)
T KOG2395|consen  378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYD  457 (644)
T ss_pred             cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeeh
Confidence            566667666542       2456678888889986322  1211111111222222233333456999999999999999


Q ss_pred             CCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          257 VRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       257 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      .-..+.-..+++...+|..|.-+.+|+.++..+..
T Consensus       458 ri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  458 RIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             hhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence            94333344578999999999999999988776653

>PHA02713 hypothetical protein; Provisional

Probab=96.38  E-value=0.73  Score=43.61  Aligned_cols=69  Identities=4%  Similarity=-0.034  Sum_probs=40.3

Q ss_pred             ccCCCEEEEEeCCC------cEEEEECCC-CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC--cEEEEECCCCce
Q 021648          192 SNDGRLMLLTTMEG------HIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--SVYAWSVRSGKE  262 (309)
Q Consensus       192 s~dg~~l~~~~~dg------~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg--~i~vwd~~~~~~  262 (309)
                      .-+|++.+.|+.++      .|..||+.+ .+-...... +........+.  -+|+..+.||.|+  ++..||..+.+-
T Consensus       461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-CcccccceeEE--ECCEEEEEeeecceeehhhcCcccccc
Confidence            34678888887542      366788876 332211111 11111111222  2889999999998  788888877654


Q ss_pred             E
Q 021648          263 V  263 (309)
Q Consensus       263 ~  263 (309)
                      .
T Consensus       538 ~  538 (557)
T PHA02713        538 N  538 (557)
T ss_pred             c
Confidence            3

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.34  E-value=0.008  Score=57.04  Aligned_cols=104  Identities=12%  Similarity=0.212  Sum_probs=75.8

Q ss_pred             EEccCCCEEEEEe----CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEE
Q 021648          190 KFSNDGRLMLLTT----MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS  265 (309)
Q Consensus       190 ~~s~dg~~l~~~~----~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~  265 (309)
                      .+.|...+++.++    ..|.|.|| ..+|++...... |   -.+.+++|+|.--.|+.|-.-|.+.+|...+.+.-..
T Consensus        22 SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~-P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   22 SWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTY-P---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             ccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccccc-c---eehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            4566666665554    24677777 356664432221 1   1234689999988999999999999999988766555


Q ss_pred             eecCCCCCcEEEECCCeeEEEEccce--EEEeeec
Q 021648          266 WMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  298 (309)
Q Consensus       266 ~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~  298 (309)
                      ...|+.++..+.|||+|..++++..-  +.+|.-+
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            66899999999999999999999865  6666554

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.015  Score=53.38  Aligned_cols=76  Identities=12%  Similarity=0.220  Sum_probs=63.2

Q ss_pred             cceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCc-EEEECCCeeEEEEccceEEEeeecCCCcccccc
Q 021648          231 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP-VIKWTPGSLMFVTGSSELSFWIPDLSKLGAYVG  307 (309)
Q Consensus       231 ~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~-~l~~~p~~~~l~s~~~d~~~~~~~~~~~~~~~~  307 (309)
                      +..+.|+|.-..+|.+..+|.+-+..+. .+++.+++-++..++ +++|.|||+++|.|-+|.++-.-|-.+-+.+.+
T Consensus        23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             eEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            4467899999999999999999999886 888999887777777 999999999999999997776666555444433

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.26  E-value=1  Score=42.26  Aligned_cols=107  Identities=16%  Similarity=0.141  Sum_probs=63.3

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeeccc-cceeE----------EEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDL----------VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL   91 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~-~~v~~----------~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~   91 (309)
                      +..+..++.++.|.-.|..+|+.+-.+.... ..+..          +++  .+..++.+.   .|+.+...|.++|+.+
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t---~dg~l~ALDa~TGk~~  143 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGT---LDARLVALDAKTGKVV  143 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEc---CCCEEEEEECCCCCEE
Confidence            4566667778889999999999887654321 11110          111  223455544   3778999999999988


Q ss_pred             EEeee--ccc--CEEEEEecCCCCeEEEec------CCCcEEEeeCCCceeeee
Q 021648           92 RYFKG--HHD--RVVSLSLCSSKDCFISGS------LDRTVLLWDQRAEKCQGL  135 (309)
Q Consensus        92 ~~~~~--h~~--~v~~v~~~~~~~~l~s~s------~Dg~v~~Wd~~~~~~~~~  135 (309)
                      .....  +..  .+.+--...++. ++.++      .+|.|...|.++++.+..
T Consensus       144 W~~~~~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       144 WSKKNGDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             eecccccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEe
Confidence            76542  111  122211112444 44432      378999999988876544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.22  E-value=0.015  Score=34.87  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=29.5

Q ss_pred             CccceEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 021648          229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV  263 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~  263 (309)
                      ..+..++|+|....||.|+.||.|.++.+ +++.+
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            45678899999999999999999999999 66553

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.18  E-value=0.011  Score=47.63  Aligned_cols=142  Identities=16%  Similarity=0.086  Sum_probs=71.0

Q ss_pred             EEEecCCCcEEEeeCCCceeeee-eeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEE
Q 021648          113 FISGSLDRTVLLWDQRAEKCQGL-LRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF  191 (309)
Q Consensus       113 l~s~s~Dg~v~~Wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~  191 (309)
                      +..-+.|+.|+-.+++..+.... .++...-...+.-...++.++.++.|.+|...-+.. ....+.. +...-...|..
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~-~~d~~~s-~~e~i~~~Ip~  110 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGA-HSDRVCS-GEESIDLGIPN  110 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccch-HHHhhhc-ccccceecccc
Confidence            34445678877766543321100 000000012222344577777899999997642111 0011110 01011112222


Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCC-CccceEEECCCCCEEEEE--cCCCcEEEEECCC
Q 021648          192 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR-NSTLEASFSPEGMFVISG--SGDGSVYAWSVRS  259 (309)
Q Consensus       192 s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~sp~g~~l~s~--s~Dg~i~vwd~~~  259 (309)
                      -.++.+..++..||.|+.|+...+..+....   +|. .+......+..+++++.+  |.|..++.|++..
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeec---cccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            3345578889999999999987766655432   222 223333444555666666  6666666666643

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.17  E-value=0.76  Score=39.82  Aligned_cols=220  Identities=14%  Similarity=0.127  Sum_probs=116.3

Q ss_pred             EeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe--
Q 021648           18 DFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF--   94 (309)
Q Consensus        18 ~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~--   94 (309)
                      .|.++.. ++.+--..+.|.-||..+++.. .+.... .+..+.....+..++.+     +..+.+++.+.+..+..+  
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~-~~~~~~~~d~~g~Lv~~-----~~g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPG-GFSSGALIDAGGRLIAC-----EHGVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCC-CcccceeecCCCeEEEE-----ccccEEEeccCCceeEEecc
Confidence            4566665 4445556777777777655322 122111 22333333334444444     345777887655542222  


Q ss_pred             --eecc-cCEEEEEecCCCCeEEEecC-----------CCcEEEeeCCCceeeeeee--ecCceeEEECCCCcEEEEEE-
Q 021648           95 --KGHH-DRVVSLSLCSSKDCFISGSL-----------DRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAF-  157 (309)
Q Consensus        95 --~~h~-~~v~~v~~~~~~~~l~s~s~-----------Dg~v~~Wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-  157 (309)
                        .+.. .+-+.+...|+|++-++-..           -|.+...|. .++....+.  ....+.+++++++..+..+. 
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence              1222 45567778888875544332           123444443 222222221  12234578888886665554 


Q ss_pred             -CCEEEEEECCC--CCc-CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC-cEEEEECCCCeEeEEeeecCCCCCccc
Q 021648          158 -GGYIRMFDARK--YEK-GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNSTL  232 (309)
Q Consensus       158 -~~~i~~~d~~~--~~~-~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~  232 (309)
                       .+.|.-|+...  ... ++-............-.++...+|.+.+++..+| .|.+|+.. |+++..+....   ..+.
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~---~~~t  258 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV---KRPT  258 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC---CCCc
Confidence             37787777642  110 1111111111222233467788888886555554 99999988 99998887542   3455


Q ss_pred             eEEE-CCCCCEEEEEcCC
Q 021648          233 EASF-SPEGMFVISGSGD  249 (309)
Q Consensus       233 ~~~~-sp~g~~l~s~s~D  249 (309)
                      +++| .|+.+.|...+..
T Consensus       259 ~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         259 NPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             cceEeCCCcCEEEEEecC
Confidence            6777 4666666555543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.10  E-value=1.6  Score=42.90  Aligned_cols=284  Identities=10%  Similarity=0.126  Sum_probs=144.3

Q ss_pred             CCcceEEEEeCCCC------CEEEEeeCCCcEEEEEc-CCCcee--eeeecccc--ceeEEEEecCCCEEEEEcCCCCCc
Q 021648           10 YNGRISSMDFHKSS------SYLVTASDDESIRLYDV-TAATCL--KTINSKKY--GVDLVCFTSHPTTVIYSSKNGWDE   78 (309)
Q Consensus        10 h~~~V~~i~~s~~~------~~l~t~s~D~~v~iWd~-~~~~~~--~~~~~~~~--~v~~~~~~~~~~~~~~~s~~g~d~   78 (309)
                      .+.+|.|++++|-|      ++++.|.|+..+++--. .....+  ..+.....  .+...++-.+..+++++..   |+
T Consensus       529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalg---dG  605 (1096)
T KOG1897|consen  529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALG---DG  605 (1096)
T ss_pred             ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcC---Cc
Confidence            34689999999753      37899999887765533 232222  22333322  2444555555667777653   67


Q ss_pred             eeEEEEc--cCCceEEEeeec--ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCcee-EEECCC--Cc
Q 021648           79 SLRLLSL--HDNKYLRYFKGH--HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYDDQ--GL  151 (309)
Q Consensus        79 ~i~~~d~--~~~~~~~~~~~h--~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~-~~~~~~--~~  151 (309)
                      .+..+.+  .++..-..-+.|  ..++.==.|+..++.-+-+..|+-..++..+..-+...+.++.... +.+..+  +-
T Consensus       606 ~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d  685 (1096)
T KOG1897|consen  606 ALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPD  685 (1096)
T ss_pred             eEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCc
Confidence            7876654  444321111111  2233333455555544444447777777643333333333332211 222211  22


Q ss_pred             EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe-----------CCC---cEEEEECCCCeE
Q 021648          152 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-----------MEG---HIHVLDSFRGTL  217 (309)
Q Consensus       152 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~-----------~dg---~v~i~d~~~~~~  217 (309)
                      -++.+.++.+++..+...  +.+++.++--. ...+.+++.+....+...+           .+.   .++++|..+-+.
T Consensus       686 ~l~~~~~~~l~i~tid~i--qkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v  762 (1096)
T KOG1897|consen  686 SLASANGGALTIGTIDEI--QKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV  762 (1096)
T ss_pred             eEEEecCCceEEEEecch--hhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence            444555666777654322  12222221111 1233444444222222211           122   366777777666


Q ss_pred             eEEeeecCC-CCCccceEEECCC-CCEEEEEcC----------CCcEEEEECCCCceEEEeec--CCCCCcEEEECCCee
Q 021648          218 LSTYNVKPV-SRNSTLEASFSPE-GMFVISGSG----------DGSVYAWSVRSGKEVASWMS--FDTEPPVIKWTPGSL  283 (309)
Q Consensus       218 ~~~~~~~~~-~~~~~~~~~~sp~-g~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~  283 (309)
                      +...+.... ..-.+.++.|..| +.+++.|..          -|.|.|+.......+.....  -.+.+.++. --+|+
T Consensus       763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~-~fngk  841 (1096)
T KOG1897|consen  763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV-EFNGK  841 (1096)
T ss_pred             EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh-hhCCe
Confidence            654432211 1123455668887 677777743          37888888877444433322  233444443 24899


Q ss_pred             EEEEccceEEEeeecCC
Q 021648          284 MFVTGSSELSFWIPDLS  300 (309)
Q Consensus       284 ~l~s~~~d~~~~~~~~~  300 (309)
                      ++|.-++-++++.|...
T Consensus       842 llA~In~~vrLye~t~~  858 (1096)
T KOG1897|consen  842 LLAGINQSVRLYEWTTE  858 (1096)
T ss_pred             EEEecCcEEEEEEcccc
Confidence            99999999999988665

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.08  E-value=0.067  Score=50.62  Aligned_cols=103  Identities=11%  Similarity=0.029  Sum_probs=60.5

Q ss_pred             CCCeEEEEccCCCEEEEEe------CCC--cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC------
Q 021648          184 SDANVVKFSNDGRLMLLTT------MEG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD------  249 (309)
Q Consensus       184 ~~~~~v~~s~dg~~l~~~~------~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D------  249 (309)
                      ..+...++||||+.++.-.      .|+  .+.+++. .+.. ..+..    ......-.|+|||+.|++.+..      
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~----g~~~t~PsWspDG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE----GHSLTRPSWSLDADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec----CCCCCCceECCCCCceEEEecCcceEEE
Confidence            3567789999999887665      243  4445453 2222 22211    1124456899999988887533      


Q ss_pred             ------CcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEee
Q 021648          250 ------GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWI  296 (309)
Q Consensus       250 ------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~  296 (309)
                            +.+.+.++..++...   ...+.|..++|||||..++.... .++++
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~-g~v~V  472 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG-GKVYL  472 (591)
T ss_pred             eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC-CEEEE
Confidence                  233333444433222   34567999999999986655332 34554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.02  E-value=0.03  Score=54.63  Aligned_cols=72  Identities=21%  Similarity=0.382  Sum_probs=59.2

Q ss_pred             CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEEC
Q 021648          184 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  257 (309)
Q Consensus       184 ~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~  257 (309)
                      .+|.+++|+.+|+.++.|-.+|.|.+||...+..++.+.........+.-+.+..++..++++..-|.  +|..
T Consensus       131 ~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  131 GPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            57899999999999999999999999999998888877655444556666777778888888888886  5554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.01  E-value=0.93  Score=39.44  Aligned_cols=268  Identities=12%  Similarity=0.094  Sum_probs=143.5

Q ss_pred             CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC---C----CCceeEEEEccCCceEEEeeeccc------
Q 021648           33 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN---G----WDESLRLLSLHDNKYLRYFKGHHD------   99 (309)
Q Consensus        33 ~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~---g----~d~~i~~~d~~~~~~~~~~~~h~~------   99 (309)
                      +.+.+.|.++++.+-.+...-.  ..+.++|+++.++.+..-   +    -...|.+||.++-+....+.--.+      
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            3788999999887776665432  235678999988765310   1    134688999988765554332111      


Q ss_pred             -CEEEEEecCCCCeEEEe--cCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceE
Q 021648          100 -RVVSLSLCSSKDCFISG--SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI  176 (309)
Q Consensus       100 -~v~~v~~~~~~~~l~s~--s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  176 (309)
                       ......++.|++++...  +---+|-+-|+..++....+..++-.......+..+.+.+.||.+....+...-+.....
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence             11224566677754433  445567777777777776666555322222233456667777777666654211110000


Q ss_pred             EEe-CCCCCCC-eEEEEccCCCEEEEEeCCCcEEEEECCCCeEe--EEeeecCCC---C----CccceEEECCCCCEEEE
Q 021648          177 FSV-GGDISDA-NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL--STYNVKPVS---R----NSTLEASFSPEGMFVIS  245 (309)
Q Consensus       177 ~~~-~~~~~~~-~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~--~~~~~~~~~---~----~~~~~~~~sp~g~~l~s  245 (309)
                      ... .....++ ..-.++..+..+..-+.+|.|+-.|.......  .........   .    +---.+++++..+.|..
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence            001 1111111 11234555666667888999998887543322  222211000   0    00113678876544443


Q ss_pred             E---cCCC-------cEEEEECCCCceEEEeecCCCCCcEEEECCCee-EEEE--c-cceEEEeeecCCCcc
Q 021648          246 G---SGDG-------SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVT--G-SSELSFWIPDLSKLG  303 (309)
Q Consensus       246 ~---s~Dg-------~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s--~-~~d~~~~~~~~~~~~  303 (309)
                      -   +.++       .|=++|+.+++.+..+.. ..++.+|+.+.+.+ +|..  + ..++.++.+.-.++-
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence            3   2222       677888999999988763 23577899998764 5533  3 245777777554443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.96  E-value=0.99  Score=40.26  Aligned_cols=102  Identities=14%  Similarity=0.168  Sum_probs=55.7

Q ss_pred             CeEEEEccCCCEEEEEeCCCcEEEE-ECCC-------CeEeE-Eeeec-CCCCCccceEEECCCCCEEEEEcCC------
Q 021648          186 ANVVKFSNDGRLMLLTTMEGHIHVL-DSFR-------GTLLS-TYNVK-PVSRNSTLEASFSPEGMFVISGSGD------  249 (309)
Q Consensus       186 ~~~v~~s~dg~~l~~~~~dg~v~i~-d~~~-------~~~~~-~~~~~-~~~~~~~~~~~~sp~g~~l~s~s~D------  249 (309)
                      ...+++.++| ++++ .. ..|..+ |...       .+.+. .+... ..+......++|.|||+..++-+.-      
T Consensus        74 p~Gi~~~~~G-lyV~-~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~  150 (367)
T TIGR02604        74 VTGLAVAVGG-VYVA-TP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT  150 (367)
T ss_pred             ccceeEecCC-EEEe-CC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence            4667888888 5554 33 345444 4321       11121 11111 0012335578999999887766621      


Q ss_pred             -------------CcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          250 -------------GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       250 -------------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                                   |.|.-++..+++ +..+..--.....++|+|+++++++-..+
T Consensus       151 ~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       151 RPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             cCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEccCC
Confidence                         445566665443 22222212346789999999998875543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.80  E-value=1.3  Score=39.98  Aligned_cols=223  Identities=12%  Similarity=0.153  Sum_probs=99.0

Q ss_pred             ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee--c------cccceeEEEEec-----CC---CEEEE
Q 021648            7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--S------KKYGVDLVCFTS-----HP---TTVIY   70 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---~~~~~   70 (309)
                      ++...++|++++.|.-| ++|.|..||++.|-|......+..-.  .      ....++.+.|..     ++   -.+++
T Consensus        82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            45568999999998544 99999999999999998776665422  1      112355555541     11   12233


Q ss_pred             EcCCCCCceeEEEEcc--C-CceEEEee----ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee-ee-eecCc
Q 021648           71 SSKNGWDESLRLLSLH--D-NKYLRYFK----GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LL-RVQGR  141 (309)
Q Consensus        71 ~s~~g~d~~i~~~d~~--~-~~~~~~~~----~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~-~~-~~~~~  141 (309)
                      +..   .+.+.+|.+.  . +.....+.    .+.++|..+.                  ..|.++++... .. .++..
T Consensus       161 GTn---~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~------------------~i~~~~G~~a~At~~~~~~l  219 (395)
T PF08596_consen  161 GTN---SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII------------------PINADTGESALATISAMQGL  219 (395)
T ss_dssp             EET---TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE------------------EEETTT--B-B-BHHHHHGG
T ss_pred             EeC---CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE------------------EEECCCCCcccCchhHhhcc
Confidence            322   3456666542  1 11111111    1222222222                  11222221100 00 00000


Q ss_pred             eeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEE-----ccCCCEEEEEeCCCcEEEEECCCCe
Q 021648          142 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF-----SNDGRLMLLTTMEGHIHVLDSFRGT  216 (309)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~-----s~dg~~l~~~~~dg~v~i~d~~~~~  216 (309)
                      .. .. .-..++.+..+..+|++...+.+.   ..... ........+++     ...+..|++-..+|.|+++-+..-+
T Consensus       220 ~~-g~-~i~g~vVvvSe~~irv~~~~~~k~---~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk  293 (395)
T PF08596_consen  220 SK-GI-SIPGYVVVVSESDIRVFKPPKSKG---AHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK  293 (395)
T ss_dssp             GG-T-----EEEEEE-SSEEEEE-TT---E---EEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred             cc-CC-CcCcEEEEEcccceEEEeCCCCcc---cceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence            00 00 012245556678888887654321   11111 11011122333     2367788888999999999998877


Q ss_pred             EeEEeeecC-CCCCccceEEECCCCCEEEEEcCCC--cEEEEEC
Q 021648          217 LLSTYNVKP-VSRNSTLEASFSPEGMFVISGSGDG--SVYAWSV  257 (309)
Q Consensus       217 ~~~~~~~~~-~~~~~~~~~~~sp~g~~l~s~s~Dg--~i~vwd~  257 (309)
                      .+....... ..........++++|..++-.|...  .+.+|.-
T Consensus       294 ei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~~  337 (395)
T PF08596_consen  294 EIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWGE  337 (395)
T ss_dssp             EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES-
T ss_pred             HhhcccCCCccccccccccEECCCCCEEEEeCcccEEEEEEEcc
Confidence            776665432 1223345678899999887776543  3344443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PHA02713 hypothetical protein; Provisional

Probab=95.78  E-value=1.6  Score=41.43  Aligned_cols=173  Identities=9%  Similarity=0.035  Sum_probs=83.2

Q ss_pred             CCCeEEEecCC------CcEEEeeCCCceeeeeeeecC---ceeEEECCCCcEEEE-EEC-----CEEEEEECCCCCcCC
Q 021648          109 SKDCFISGSLD------RTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAV-AFG-----GYIRMFDARKYEKGP  173 (309)
Q Consensus       109 ~~~~l~s~s~D------g~v~~Wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~-----~~i~~~d~~~~~~~~  173 (309)
                      +++..+.||.+      .++..+|++++.....-.++.   ....+. -++.+++. |.+     ..+..||....+=  
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W--  379 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKW--  379 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeE--
Confidence            56777888754      346788887765432222211   112222 23444443 333     3477788654210  


Q ss_pred             ceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC-----------------------cEEEEECCCCeEeEEeeecCCCCCc
Q 021648          174 FDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----------------------HIHVLDSFRGTLLSTYNVKPVSRNS  230 (309)
Q Consensus       174 ~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg-----------------------~v~i~d~~~~~~~~~~~~~~~~~~~  230 (309)
                      ..+..+.........+  .-+|++++.||.++                       .+..||+.+.+-...   .+.....
T Consensus       380 ~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v---~~m~~~r  454 (557)
T PHA02713        380 KMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL---PNFWTGT  454 (557)
T ss_pred             EECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec---CCCCccc
Confidence            0000000011111222  33788888887653                       466777766543221   1111111


Q ss_pred             cceEEECCCCCEEEEEcCCC------cEEEEECCC---CceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          231 TLEASFSPEGMFVISGSGDG------SVYAWSVRS---GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       231 ~~~~~~sp~g~~l~s~s~Dg------~i~vwd~~~---~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      ....+..-+|+..+.||.++      .+..||..+   ++.+..++..-.....+++  ++++.+.|+.+
T Consensus       455 ~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~  522 (557)
T PHA02713        455 IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYE  522 (557)
T ss_pred             ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeec
Confidence            11112223677777787652      467899886   3334444332222222332  77888888854

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.76  E-value=1.9  Score=40.98  Aligned_cols=227  Identities=13%  Similarity=0.143  Sum_probs=108.7

Q ss_pred             CCCCEEEEeeCC------CcEEEEEcCCCceeee--eeccccceeEEEEecCCCEEEEEcCCCCC------ceeEEEEcc
Q 021648           21 KSSSYLVTASDD------ESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWD------ESLRLLSLH   86 (309)
Q Consensus        21 ~~~~~l~t~s~D------~~v~iWd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g~d------~~i~~~d~~   86 (309)
                      ..+.+++.||.+      .++..+|..+++-...  +..... ...++... + .+++.  +|.|      .++..||..
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~~-~-~lYv~--GG~~~~~~~l~~ve~YD~~  357 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVLN-G-KLYVV--GGYDSGSDRLSSVERYDPR  357 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEEC-C-EEEEE--ccccCCCcccceEEEecCC
Confidence            345677888887      4778888876632221  221111 12223322 2 33322  2444      466777877


Q ss_pred             CCceEE--EeeecccCEEEEEecCCCCeEEEecCCC-----cEEEeeCCCceeeeeeeecC-c-eeEEECCCCcEEE-EE
Q 021648           87 DNKYLR--YFKGHHDRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAEKCQGLLRVQG-R-PAAAYDDQGLVFA-VA  156 (309)
Q Consensus        87 ~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~s~Dg-----~v~~Wd~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~-~~  156 (309)
                      .++=..  .+...... .+++. -+|...+.||.||     ++..||+++.+....-.+.. . ......-.+.+++ +|
T Consensus       358 ~~~W~~~a~M~~~R~~-~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG  435 (571)
T KOG4441|consen  358 TNQWTPVAPMNTKRSD-FGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGG  435 (571)
T ss_pred             CCceeccCCccCcccc-ceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcC
Confidence            665111  11111111 11111 2577888999886     57788887776543322211 1 1111222344443 44


Q ss_pred             EC------CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCc-----EEEEECCCCeEeEEeeecC
Q 021648          157 FG------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-----IHVLDSFRGTLLSTYNVKP  225 (309)
Q Consensus       157 ~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~-----v~i~d~~~~~~~~~~~~~~  225 (309)
                      .+      ..+..||..+..=.  .+...........  ...-++.+++.||.|+.     |..+|..+.+-...-... 
T Consensus       436 ~~~~~~~l~sve~YDP~t~~W~--~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~-  510 (571)
T KOG4441|consen  436 GDGSSNCLNSVECYDPETNTWT--LIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT-  510 (571)
T ss_pred             cCCCccccceEEEEcCCCCcee--ecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc-
Confidence            33      35677776542100  0000000111111  23347888888887763     666777665543321111 


Q ss_pred             CCCCccceEEECCCCCEEEEEcCCC-----cEEEEECCCCc
Q 021648          226 VSRNSTLEASFSPEGMFVISGSGDG-----SVYAWSVRSGK  261 (309)
Q Consensus       226 ~~~~~~~~~~~sp~g~~l~s~s~Dg-----~i~vwd~~~~~  261 (309)
                      .....+..+  .-+++..+.|+.||     +|..||..+.+
T Consensus       511 ~~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  511 SPRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             cccccccEE--EECCEEEEEecccCccccceeEEcCCCCCc
Confidence            111111111  23778888999887     66667766543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.58  E-value=2.1  Score=40.24  Aligned_cols=71  Identities=10%  Similarity=0.057  Sum_probs=43.3

Q ss_pred             CEEEEeeCCCcEEEEEcCCCceeeeeeccc----cceeEEEEecCCCEEEEEcCC---CCCceeEEEEccCCceEEEee
Q 021648           24 SYLVTASDDESIRLYDVTAATCLKTINSKK----YGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRYFK   95 (309)
Q Consensus        24 ~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~s~~---g~d~~i~~~d~~~~~~~~~~~   95 (309)
                      ..+..++.|+.+.-.|..+|+.+.......    +.+...-.. .+..++.++..   +.++.|..+|.++|+.+..+.
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            456677789999999999999876544221    111110000 12344444321   236789999999999877653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.56  E-value=2.7  Score=41.31  Aligned_cols=111  Identities=12%  Similarity=0.073  Sum_probs=68.0

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeecccc--------ceeEEEEec----------------CCCEEEEEcCCCCCc
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKKY--------GVDLVCFTS----------------HPTTVIYSSKNGWDE   78 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~--------~v~~~~~~~----------------~~~~~~~~s~~g~d~   78 (309)
                      +..|..++.++.|.-.|..+|+.+-.+..+..        .+..+++..                .+..++..+.   |+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~---Dg  270 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS---DA  270 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC---CC
Confidence            45677777889999999999998876643321        012223321                1235555543   78


Q ss_pred             eeEEEEccCCceEEEeeecccCEE-------------EEEecC--CCCeEEEecC----------CCcEEEeeCCCceee
Q 021648           79 SLRLLSLHDNKYLRYFKGHHDRVV-------------SLSLCS--SKDCFISGSL----------DRTVLLWDQRAEKCQ  133 (309)
Q Consensus        79 ~i~~~d~~~~~~~~~~~~h~~~v~-------------~v~~~~--~~~~l~s~s~----------Dg~v~~Wd~~~~~~~  133 (309)
                      .+.-.|.++|+....+.. .+.|.             .+.-.|  .+..++.++.          +|.|+-+|.++++..
T Consensus       271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            899999999998877632 22221             011112  1335555542          688999999999877


Q ss_pred             eeee
Q 021648          134 GLLR  137 (309)
Q Consensus       134 ~~~~  137 (309)
                      ....
T Consensus       350 W~~~  353 (764)
T TIGR03074       350 WAWD  353 (764)
T ss_pred             eEEe
Confidence            6554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.45  E-value=1.7  Score=38.51  Aligned_cols=244  Identities=14%  Similarity=0.134  Sum_probs=103.3

Q ss_pred             EcCCCceeeeeecccc-----ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeE
Q 021648           39 DVTAATCLKTINSKKY-----GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF  113 (309)
Q Consensus        39 d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l  113 (309)
                      |..||..+..+.....     -...-||.++|+.+++++...-...+.+.|+++++.+.--.+-.+......++++++.+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence            5566665544432221     12334788999988887654446677788999987554433322223345667877776


Q ss_pred             EEecCCCcEEEeeCCCceeeeeeeecCc----eeEEECCCCcEEEEEE----C-------------------CEEEEEEC
Q 021648          114 ISGSLDRTVLLWDQRAEKCQGLLRVQGR----PAAAYDDQGLVFAVAF----G-------------------GYIRMFDA  166 (309)
Q Consensus       114 ~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~-------------------~~i~~~d~  166 (309)
                      +=....+.++--|+++.+.......+..    .......+...+++..    +                   ..|...|+
T Consensus        96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            5554556788888888765444443321    1122233333333221    0                   12222333


Q ss_pred             CCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC-----cEEEEECCC-CeEeEEeeecCCCCCccc-eEEECCC
Q 021648          167 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFR-GTLLSTYNVKPVSRNSTL-EASFSPE  239 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg-----~v~i~d~~~-~~~~~~~~~~~~~~~~~~-~~~~sp~  239 (309)
                      ++.+.  ..++.   ....+.-+-|||....+++-+-+|     .-|||-+.+ +.......-  ....... -=-|.||
T Consensus       176 ~tG~~--~~v~~---~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~--~~~~e~~gHEfw~~D  248 (386)
T PF14583_consen  176 KTGER--KVVFE---DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR--RMEGESVGHEFWVPD  248 (386)
T ss_dssp             TT--E--EEEEE---ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TT
T ss_pred             CCCce--eEEEe---cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec--CCCCcccccccccCC
Confidence            32111  11111   112344567888776666666554     136665433 333322211  1111111 1238999


Q ss_pred             CCEEEEE-----cCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          240 GMFVISG-----SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       240 g~~l~s~-----s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      |..|.--     +.+..|.-.|..+++.-. +...+ ....+--++|++++|--+.|
T Consensus       249 G~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-~~~~p-~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  249 GSTIWYDSYTPGGQDFWIAGYDPDTGERRR-LMEMP-WCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             SS-EEEEEEETTT--EEEEEE-TTT--EEE-EEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred             CCEEEEEeecCCCCceEEEeeCCCCCCceE-EEeCC-ceeeeEEcCCCCEEEecCCC
Confidence            9776542     335577788888875432 22222 23455568899998664443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.87  E-value=0.79  Score=41.76  Aligned_cols=104  Identities=11%  Similarity=0.169  Sum_probs=64.2

Q ss_pred             EEEEccCCCE-------EEEEeCCCcEEEEECCC-CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          188 VVKFSNDGRL-------MLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       188 ~v~~s~dg~~-------l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      .|.|.|+.++       -+.|-.+..|--.|++- |..+..-+.+......-.+..-.-...|+|.||.-|-|++||.-.
T Consensus       513 vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig  592 (776)
T COG5167         513 VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG  592 (776)
T ss_pred             eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhc
Confidence            5666664321       23455555555557653 333322221111111112223334567999999999999999865


Q ss_pred             CceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          260 GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       260 ~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      .+....+++....|..+..+.+|+.+...+..
T Consensus       593 ~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         593 KRAKTALPGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             chhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence            55555678888899999999999987777664

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.78  E-value=2.3  Score=36.35  Aligned_cols=218  Identities=16%  Similarity=0.223  Sum_probs=117.0

Q ss_pred             eEEEEecCCCEEEEEcCCCCCceeEEEEcc------CCce-EEEeee-----cccCEEEEEecCCCC------------e
Q 021648           57 DLVCFTSHPTTVIYSSKNGWDESLRLLSLH------DNKY-LRYFKG-----HHDRVVSLSLCSSKD------------C  112 (309)
Q Consensus        57 ~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~------~~~~-~~~~~~-----h~~~v~~v~~~~~~~------------~  112 (309)
                      ..++++|.+.  ++.+.++ -+...+||.+      ..+. +-++..     -....+.+.|+....            .
T Consensus        26 WGia~~p~~~--~WVadng-T~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        26 WGLSYRPGGP--FWVANTG-TGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ceeEecCCCC--EEEecCC-cceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            4577777653  3444344 4678888876      1222 222221     234567777764332            3


Q ss_pred             EEEecCCCcEEEeeCCCcee---eeeeeec----C--ceeEEEC--C-CCcEEEEE-ECCEEEEEECCCC--------Cc
Q 021648          113 FISGSLDRTVLLWDQRAEKC---QGLLRVQ----G--RPAAAYD--D-QGLVFAVA-FGGYIRMFDARKY--------EK  171 (309)
Q Consensus       113 l~s~s~Dg~v~~Wd~~~~~~---~~~~~~~----~--~~~~~~~--~-~~~~~~~~-~~~~i~~~d~~~~--------~~  171 (309)
                      |+-++.||+|.-|...-...   ...+.+.    .  ...++..  . ...++++- ..++|.+||-.-.        ..
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D  182 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID  182 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence            67788999999998532221   1111111    1  0111111  1 22344333 3588998884311        01


Q ss_pred             -------CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC------
Q 021648          172 -------GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP------  238 (309)
Q Consensus       172 -------~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp------  238 (309)
                             .++.+..+.+.. -|....-.++++.=+.+-.-|.|-+||+ .|.+++++... ..-+..|.++..|      
T Consensus       183 P~iPagyAPFnIqnig~~l-yVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~-g~LNaPWG~a~APa~FG~~  259 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTL-YVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASS-GRLNAPWGLAIAPESFGSL  259 (336)
T ss_pred             CCCCCCCCCcceEEECCeE-EEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccC-CcccCCceeeeChhhhCCC
Confidence                   122222222210 1111222444444455556678999997 47888776432 2235567777655      


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCC------CcEEEECC
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE------PPVIKWTP  280 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~------v~~l~~~p  280 (309)
                      .|..|+-==-||+|.++|..+++.+..+..-++.      +..|+|..
T Consensus       260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            5566665566999999999999988777654332      34577755

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.59  E-value=0.84  Score=39.37  Aligned_cols=107  Identities=17%  Similarity=0.198  Sum_probs=57.5

Q ss_pred             CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 021648          184 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV  263 (309)
Q Consensus       184 ~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~  263 (309)
                      ..+..+..++||++++++..-.-..-||.-... -..+..  ....++..+.|+|++...+.+ ..|.|+.=+...  ..
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r--~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~  218 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNR--NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DG  218 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EE
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEcc--CccceehhceecCCCCEEEEe-CCcEEEEccCCC--Cc
Confidence            346667788999988777555555567753211 122221  124567789999998887766 788888877211  22


Q ss_pred             EEeec-------CCCCCcEEEECCCeeEEEEccceEEEee
Q 021648          264 ASWMS-------FDTEPPVIKWTPGSLMFVTGSSELSFWI  296 (309)
Q Consensus       264 ~~~~~-------~~~~v~~l~~~p~~~~l~s~~~d~~~~~  296 (309)
                      .++..       -.-.+..++|.|++...+.|++..-+..
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S  258 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVS  258 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEE
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEe
Confidence            22221       1112577899999998888887643333

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.56  E-value=2.5  Score=40.11  Aligned_cols=204  Identities=15%  Similarity=0.193  Sum_probs=99.4

Q ss_pred             ceeEEEEccCCceEEEeee-cccCEEEEEecCCCCeEEEecCC------CcEEEeeCCCceeeeeeeecC-c-eeEEECC
Q 021648           78 ESLRLLSLHDNKYLRYFKG-HHDRVVSLSLCSSKDCFISGSLD------RTVLLWDQRAEKCQGLLRVQG-R-PAAAYDD  148 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~s~D------g~v~~Wd~~~~~~~~~~~~~~-~-~~~~~~~  148 (309)
                      ..+..+|..+++-.....- +...-.+++.. ++...++||.|      .++..+|++.++....-.+.. + ......-
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l  379 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL  379 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence            4788888877743222111 11122333333 45788999999      366788887776543222221 1 1111122


Q ss_pred             CCcEEEE-EECC-----EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC------cEEEEECCCCe
Q 021648          149 QGLVFAV-AFGG-----YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG------HIHVLDSFRGT  216 (309)
Q Consensus       149 ~~~~~~~-~~~~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg------~v~i~d~~~~~  216 (309)
                      .+.++++ |.+|     .+-.||.+..+=....  .........  -...-+|++.++||.++      .|..||+.+..
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~--gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGH--GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccC--CCCcceeee--EEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence            3444444 4553     5666765542100000  000001111  12334788999988654      46678877655


Q ss_pred             EeEEeeecCCCCCcc-ceEEECCCCCEEEEEcCCC-----cEEEEECCCCceEEE-eecCCCCCcEEEECCCeeEEEEcc
Q 021648          217 LLSTYNVKPVSRNST-LEASFSPEGMFVISGSGDG-----SVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~-~~~~~sp~g~~l~s~s~Dg-----~i~vwd~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~s~~  289 (309)
                      -...-.   ....+. ..++ .-+++.++.||.|+     ++..+|..+.+-... .+........++ .-++++.+.|+
T Consensus       456 W~~~~~---M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG  530 (571)
T KOG4441|consen  456 WTLIAP---MNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGG  530 (571)
T ss_pred             eeecCC---cccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEec
Confidence            432111   111111 1122 23778888888887     377788877543222 112221111122 23567777777


Q ss_pred             ce
Q 021648          290 SE  291 (309)
Q Consensus       290 ~d  291 (309)
                      .|
T Consensus       531 ~~  532 (571)
T KOG4441|consen  531 FD  532 (571)
T ss_pred             cc
Confidence            65

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.18  E-value=0.18  Score=29.30  Aligned_cols=30  Identities=23%  Similarity=0.470  Sum_probs=25.2

Q ss_pred             CCeEEEEccCC---CEEEEEeCCCcEEEEECCC
Q 021648          185 DANVVKFSNDG---RLMLLTTMEGHIHVLDSFR  214 (309)
Q Consensus       185 ~~~~v~~s~dg---~~l~~~~~dg~v~i~d~~~  214 (309)
                      .++++.|||+.   .+|+.+-.-|.|+|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            36789999855   4888898999999999985

It contains a characteristic DLL sequence motif.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.05  E-value=3.2  Score=34.92  Aligned_cols=103  Identities=23%  Similarity=0.309  Sum_probs=63.4

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEE-CCCCeEeE-EeeecCCCCCccceEEECCCCCEEEEEc---CCCcEEEEECCC--
Q 021648          187 NVVKFSNDGRLMLLTTMEGHIHVLD-SFRGTLLS-TYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVYAWSVRS--  259 (309)
Q Consensus       187 ~~v~~s~dg~~l~~~~~dg~v~i~d-~~~~~~~~-~~~~~~~~~~~~~~~~~sp~g~~l~s~s---~Dg~i~vwd~~~--  259 (309)
                      ..-.|+++|...+....+...+++. ...+.... .... +.....|..+.+||||..+|...   .++.|.|=-+..  
T Consensus        69 ~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~-~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~  147 (253)
T PF10647_consen   69 TRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDW-PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG  147 (253)
T ss_pred             ccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecc-cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence            3446888988877777666666663 23333221 1111 11112688999999999888776   356777766532  


Q ss_pred             -C--ceE----EEeecCCCCCcEEEECCCeeEEEEccc
Q 021648          260 -G--KEV----ASWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       260 -~--~~~----~~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                       +  ..+    .........+..++|.+++.+++.+..
T Consensus       148 ~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~  185 (253)
T PF10647_consen  148 DGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRS  185 (253)
T ss_pred             CCCcceeccceEecccccCcceeeeecCCCEEEEEeCC
Confidence             2  111    111233457889999999998877665

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.98  E-value=2.9  Score=40.68  Aligned_cols=77  Identities=14%  Similarity=0.212  Sum_probs=51.1

Q ss_pred             CCCeEEEEccCCCEEEEEeCCCcEEEEECCC-----C-----eE--e-EEeee-----cCCCCCccceEEECCC---CCE
Q 021648          184 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-----G-----TL--L-STYNV-----KPVSRNSTLEASFSPE---GMF  242 (309)
Q Consensus       184 ~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-----~-----~~--~-~~~~~-----~~~~~~~~~~~~~sp~---g~~  242 (309)
                      ..|..|.+||+|+.++..|..|-+.+ .+..     +     ..  . .++..     .......+..+.|+|.   +.+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            35778899999999999888665443 3211     1     10  1 11111     1112235678999996   589


Q ss_pred             EEEEcCCCcEEEEECCCCc
Q 021648          243 VISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       243 l~s~s~Dg~i~vwd~~~~~  261 (309)
                      |+.=..|+++|+||+...+
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            9999999999999997643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.82  E-value=0.39  Score=39.45  Aligned_cols=72  Identities=22%  Similarity=0.362  Sum_probs=52.1

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEe-eecC----------CCCCccceEEECCCCCEEEEEcCCCcEEEEE
Q 021648          188 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY-NVKP----------VSRNSTLEASFSPEGMFVISGSGDGSVYAWS  256 (309)
Q Consensus       188 ~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~----------~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd  256 (309)
                      .+.+..+++++++-+.+|.+++||+.+++.+... ...+          .....+..+.++.+|.-+++-+ +|..+.|+
T Consensus        15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence            3446678999999999999999999988766433 1111          1234566778888898888776 47889998


Q ss_pred             CCCC
Q 021648          257 VRSG  260 (309)
Q Consensus       257 ~~~~  260 (309)
                      ..-+
T Consensus        94 ~~L~   97 (219)
T PF07569_consen   94 PDLG   97 (219)
T ss_pred             cccc
Confidence            7543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.78  E-value=4.3  Score=35.53  Aligned_cols=117  Identities=18%  Similarity=0.254  Sum_probs=73.2

Q ss_pred             CCeEEEEccCCCEEEEEeCC------CcEEEEECCCCeEeEEeeecCC------------CCCccceEEECCCCCEEEEE
Q 021648          185 DANVVKFSNDGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPV------------SRNSTLEASFSPEGMFVISG  246 (309)
Q Consensus       185 ~~~~v~~s~dg~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~------------~~~~~~~~~~sp~g~~l~s~  246 (309)
                      +..++++.++|.++++.-.+      ..|+.++.. |..+..+.....            .....-.++++|||+.|+++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            45567788899998888778      889888876 776665532211            11223368999999977766


Q ss_pred             cCC-----C--c-------EEE--EECCC-CceEEEee--c-------CCCCCcEEEECCCeeEEEEcc-------ceEE
Q 021648          247 SGD-----G--S-------VYA--WSVRS-GKEVASWM--S-------FDTEPPVIKWTPGSLMFVTGS-------SELS  293 (309)
Q Consensus       247 s~D-----g--~-------i~v--wd~~~-~~~~~~~~--~-------~~~~v~~l~~~p~~~~l~s~~-------~d~~  293 (309)
                      -+.     +  .       +++  +|..+ ++....+.  .       ....++.+.+-|++++|+-=-       ...+
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~r  244 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKR  244 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEE
Confidence            443     2  1       455  44444 32333321  1       234678899999998776522       2477


Q ss_pred             EeeecCCCc
Q 021648          294 FWIPDLSKL  302 (309)
Q Consensus       294 ~~~~~~~~~  302 (309)
                      ++..++...
T Consensus       245 i~~v~l~~a  253 (326)
T PF13449_consen  245 IYRVDLSDA  253 (326)
T ss_pred             EEEEEcccc
Confidence            777776544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.73  E-value=3.8  Score=34.67  Aligned_cols=222  Identities=14%  Similarity=0.150  Sum_probs=111.9

Q ss_pred             cCCCEEEEEcCCCCCceeEEEEc-cCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee-------
Q 021648           63 SHPTTVIYSSKNGWDESLRLLSL-HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-------  134 (309)
Q Consensus        63 ~~~~~~~~~s~~g~d~~i~~~d~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~-------  134 (309)
                      ..++.++.+..   +| +.++++ ...+..+..  +...|..+...++-+.|+.-+ |+.+.++++..-....       
T Consensus         5 ~~~~~L~vGt~---~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    5 SWGDRLLVGTE---DG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             cCCCEEEEEEC---CC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence            34567777754   34 888888 333333333  233499999998877666655 6999999975432222       


Q ss_pred             --------eee-ecCceeEE---ECCCCcEEEEEECCEEEEEECCCCCcCC-ceEEEeCCCCCCCeEEEEccCCCEEEEE
Q 021648          135 --------LLR-VQGRPAAA---YDDQGLVFAVAFGGYIRMFDARKYEKGP-FDIFSVGGDISDANVVKFSNDGRLMLLT  201 (309)
Q Consensus       135 --------~~~-~~~~~~~~---~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~v~~s~dg~~l~~~  201 (309)
                              .+. ..+.....   .......++++....|.+|......... .....+.- ...+..+++.  +..++.+
T Consensus        78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~  154 (275)
T PF00780_consen   78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVG  154 (275)
T ss_pred             cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEE
Confidence                    110 01111111   1234467777778899999876521111 11222211 2456777777  5666666


Q ss_pred             eCCCcEEEEECCCCeEeEEeeecCCC--------CCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEE-EeecCCCC
Q 021648          202 TMEGHIHVLDSFRGTLLSTYNVKPVS--------RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA-SWMSFDTE  272 (309)
Q Consensus       202 ~~dg~v~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~-~~~~~~~~  272 (309)
                      ..++ ..+.|+.++....-+......        ......+---+++.+|++-  |..-..-|. .|+..+ ....-+..
T Consensus       155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~  230 (275)
T PF00780_consen  155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSA  230 (275)
T ss_pred             eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcC-CCCcCcccEEEcCCc
Confidence            6444 567788866554433211100        0111122222455666543  333333333 444433 22223445


Q ss_pred             CcEEEECCCeeEEEEccceEEEeeecC
Q 021648          273 PPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       273 v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      +..+++... -+++....-+.+|...-
T Consensus       231 p~~~~~~~p-yli~~~~~~iEV~~~~~  256 (275)
T PF00780_consen  231 PQSVAYSSP-YLIAFSSNSIEVRSLET  256 (275)
T ss_pred             hhEEEEECC-EEEEECCCEEEEEECcC
Confidence            566666332 22333333488886643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.69  E-value=3.9  Score=34.76  Aligned_cols=46  Identities=9%  Similarity=0.078  Sum_probs=33.2

Q ss_pred             eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec
Q 021648           94 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ  139 (309)
Q Consensus        94 ~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~  139 (309)
                      +.|-++.+.++.|+|+.+.|.+......-.+|=...++.+.++...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~  126 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT  126 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc
Confidence            3455666999999999998888877777666655566666665544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.55  E-value=0.38  Score=28.02  Aligned_cols=31  Identities=16%  Similarity=0.328  Sum_probs=26.5

Q ss_pred             cceEEEEeCCCC---CEEEEeeCCCcEEEEEcCC
Q 021648           12 GRISSMDFHKSS---SYLVTASDDESIRLYDVTA   42 (309)
Q Consensus        12 ~~V~~i~~s~~~---~~l~t~s~D~~v~iWd~~~   42 (309)
                      |+|.+++|+|+.   .+|+-+-.-+.|-|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            579999999854   5888888889999999975

It contains a characteristic DLL sequence motif.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.40  E-value=0.6  Score=26.65  Aligned_cols=40  Identities=20%  Similarity=0.209  Sum_probs=28.6

Q ss_pred             CCCCEEEEE-cCCCcEEEEECCCCceEEEeecCCCCCcEEEE
Q 021648          238 PEGMFVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW  278 (309)
Q Consensus       238 p~g~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~  278 (309)
                      |++++|+++ -.+++|.++|..+++.+..+.. ......++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence            677777665 4578999999999888777654 344555555

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.32  E-value=2.6  Score=38.01  Aligned_cols=99  Identities=11%  Similarity=0.145  Sum_probs=66.7

Q ss_pred             CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeE--EeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCC
Q 021648          183 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS--TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       183 ~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~  260 (309)
                      ...+.++.||+|.+.+|.--.+..|.+++....+...  ..+.+ .....+....|+.+ +-+|-.+..| +-+|-+...
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck-~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK-TKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc-cCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            3478999999999999999999999998863322221  11111 12234566778655 7777776655 777776443


Q ss_pred             -ceEEEeecCCCCCcEEEECCCeeE
Q 021648          261 -KEVASWMSFDTEPPVIKWTPGSLM  284 (309)
Q Consensus       261 -~~~~~~~~~~~~v~~l~~~p~~~~  284 (309)
                       +.++....|+..|+--.|.|+.+.
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v  167 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAV  167 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccce
Confidence             335555678888999999987653

>PRK10115 protease 2; Provisional

Probab=93.29  E-value=8.7  Score=37.49  Aligned_cols=112  Identities=15%  Similarity=0.181  Sum_probs=69.0

Q ss_pred             ceEEEEeCCCCCEEEEeeC-CC----cEEEEEcCCCceeee-eeccccceeEEEEecCCCEEEEEcCC---CCCceeEEE
Q 021648           13 RISSMDFHKSSSYLVTASD-DE----SIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKN---GWDESLRLL   83 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~-D~----~v~iWd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~---g~d~~i~~~   83 (309)
                      .+..+.++|||++|+-+-. +|    ++++-|+.+|+.+.. +..-.   ..++|.++++.++++...   .....+..+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            4777889999998765432 22    577889888864322 22221   348999999888776542   123578888


Q ss_pred             EccCC--ceEEEeeecccCEE-EEEecCCCCeEEEec---CCCcEEEeeC
Q 021648           84 SLHDN--KYLRYFKGHHDRVV-SLSLCSSKDCFISGS---LDRTVLLWDQ  127 (309)
Q Consensus        84 d~~~~--~~~~~~~~h~~~v~-~v~~~~~~~~l~s~s---~Dg~v~~Wd~  127 (309)
                      ++.++  +-...+........ .+..+.++++++..+   .++.+.+++.
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            88887  44555554444333 333344777544332   3467888884

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.29  E-value=1.3  Score=38.86  Aligned_cols=103  Identities=20%  Similarity=0.353  Sum_probs=56.2

Q ss_pred             CeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee----ecCCCCCccceEEECCC----CCEEEEEcCC--------
Q 021648          186 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN----VKPVSRNSTLEASFSPE----GMFVISGSGD--------  249 (309)
Q Consensus       186 ~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~sp~----g~~l~s~s~D--------  249 (309)
                      ...++|.|||+++++-- .|.|++++ ..+.....+.    .......-...++|+|+    +...++-+..        
T Consensus         4 P~~~a~~pdG~l~v~e~-~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVAER-SGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEEET-TTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEEeC-CceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            36789999999887654 99999999 4455422211    11122334567899994    4433433422        


Q ss_pred             CcEEEEECCCC-------ce-EEEeec---CCCCCcEEEECCCeeEEEEccc
Q 021648          250 GSVYAWSVRSG-------KE-VASWMS---FDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       250 g~i~vwd~~~~-------~~-~~~~~~---~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      ..|.-|.....       +. +..+..   ....-..|+|.||+.+.++.+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence            24555555443       11 122222   1122355999999988877664

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.15  E-value=0.31  Score=40.99  Aligned_cols=57  Identities=19%  Similarity=0.422  Sum_probs=47.7

Q ss_pred             EECCCCCEEEEEcCC-----CcEEEEECCCC-ceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          235 SFSPEGMFVISGSGD-----GSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       235 ~~sp~g~~l~s~s~D-----g~i~vwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      .|||||++|++.-.|     |.|-|||.+.+ +.+.++..|.=....+.|.+||+.++.+...
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGG  182 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGG  182 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCc
Confidence            699999999887555     68999999764 4588899998888889999999988876653

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.12  E-value=4.2  Score=34.59  Aligned_cols=117  Identities=16%  Similarity=0.229  Sum_probs=79.1

Q ss_pred             CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          180 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       180 ~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      .+....+++++++|+-+.|.+-.....-.++=...|.++.+......+.  .-.+.+.-+|+|+++--.+..++++.+..
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D--pE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD--PETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC--hhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            3444568999999999999888887776666566788888765443332  23578888999999999999999998876


Q ss_pred             CceEEEe-----e----cC-CCCCcEEEECCCeeEEEEcc-ce-EEEeeec
Q 021648          260 GKEVASW-----M----SF-DTEPPVIKWTPGSLMFVTGS-SE-LSFWIPD  298 (309)
Q Consensus       260 ~~~~~~~-----~----~~-~~~v~~l~~~p~~~~l~s~~-~d-~~~~~~~  298 (309)
                      ...+..+     +    .+ +...-.+||.|....|.-+- .+ ..++.+.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            5332211     1    11 34455699999765444443 33 5555554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.08  E-value=4.9  Score=34.08  Aligned_cols=227  Identities=15%  Similarity=0.160  Sum_probs=112.1

Q ss_pred             EEEeCCCCCE-EEEeeCCCc-EEEEEcCCCceeeeeeccccc--eeEEEEecCCCEEEEEcCCCCC---ceeEEEEccCC
Q 021648           16 SMDFHKSSSY-LVTASDDES-IRLYDVTAATCLKTINSKKYG--VDLVCFTSHPTTVIYSSKNGWD---ESLRLLSLHDN   88 (309)
Q Consensus        16 ~i~~s~~~~~-l~t~s~D~~-v~iWd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~s~~g~d---~~i~~~d~~~~   88 (309)
                      .|.|+|.-.+ ++-+=.=|+ ..++|..+...+.++...+..  --.-+|++++..++..- ++.|   +.|-+||...+
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATE-ndfd~~rGViGvYd~r~~  150 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATE-NDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeec-CCCCCCCceEEEEecccc
Confidence            3555554332 333333333 356777766665554332211  12247889998777653 4433   57889998643


Q ss_pred             -ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEe-eCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEEC
Q 021648           89 -KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW-DQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDA  166 (309)
Q Consensus        89 -~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~W-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  166 (309)
                       +.+..+..|--.-..+.+.+||+.++.+  +|-|+.- |+  ++....+.       ...| +.++.-..+|.+.    
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIethpdf--gR~~lNld-------sMeP-Slvlld~atG~li----  214 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETHPDF--GRTELNLD-------SMEP-SLVLLDAATGNLI----  214 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEe--CCceeccccc--Cccccchh-------hcCc-cEEEEeccccchh----
Confidence             3355566776667788899999988876  4555543 21  11100000       0001 1111110111100    


Q ss_pred             CCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEE----EEE-CCCCeEeEEeeecC----CCCCccceEEEC
Q 021648          167 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH----VLD-SFRGTLLSTYNVKP----VSRNSTLEASFS  237 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~----i~d-~~~~~~~~~~~~~~----~~~~~~~~~~~s  237 (309)
                         ++   ..+....+...++-++..+||+.+..+-..|.-.    +.- ...++.+..+....    ...+.+-+++.+
T Consensus       215 ---ek---h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n  288 (366)
T COG3490         215 ---EK---HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN  288 (366)
T ss_pred             ---hh---ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeec
Confidence               00   0001011223456677777887665544333210    000 12233333222111    012345567777


Q ss_pred             CCCCEEEEEcCCC-cEEEEECCCCceEEE
Q 021648          238 PEGMFVISGSGDG-SVYAWSVRSGKEVAS  265 (309)
Q Consensus       238 p~g~~l~s~s~Dg-~i~vwd~~~~~~~~~  265 (309)
                      -+...++..|-.| ..-+||..++..+..
T Consensus       289 ~~~glV~lTSP~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         289 RRDGLVALTSPRGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             ccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence            6666666655554 677899999987654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.91  E-value=8.5  Score=37.25  Aligned_cols=104  Identities=10%  Similarity=0.105  Sum_probs=65.4

Q ss_pred             CCCEEEEEeCCCcEEEEECCC-------C----eE------eEE-eeecCCCCCccceEEEC--CCCCEEEEEcCCCcEE
Q 021648          194 DGRLMLLTTMEGHIHVLDSFR-------G----TL------LST-YNVKPVSRNSTLEASFS--PEGMFVISGSGDGSVY  253 (309)
Q Consensus       194 dg~~l~~~~~dg~v~i~d~~~-------~----~~------~~~-~~~~~~~~~~~~~~~~s--p~g~~l~s~s~Dg~i~  253 (309)
                      +.+.|+.+.+||.|.+|...+       .    ..      +.. +..  .....+|.++++  ...++||.++.-..|.
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~--~v~~SaWGLdIh~~~~~rlIAVSsNs~~VT  190 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL--RVGASAWGLDIHDYKKSRLIAVSSNSQEVT  190 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe--ecCCceeEEEEEecCcceEEEEecCCceEE
Confidence            557888999999999996411       0    00      000 111  113467889998  7889999998888898


Q ss_pred             EEECCCC--ce-EEEeecCCCCCcEEEECCCe---e---EEEEccceEEEeeecC
Q 021648          254 AWSVRSG--KE-VASWMSFDTEPPVIKWTPGS---L---MFVTGSSELSFWIPDL  299 (309)
Q Consensus       254 vwd~~~~--~~-~~~~~~~~~~v~~l~~~p~~---~---~l~s~~~d~~~~~~~~  299 (309)
                      ||-....  +. ...-..|...|++|+|-++.   .   .+++++-...+|.++.
T Consensus       191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8876542  11 11112356789999998854   2   5555555555555444

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.88  E-value=7.5  Score=35.66  Aligned_cols=106  Identities=11%  Similarity=0.216  Sum_probs=60.0

Q ss_pred             CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeec----CCCCCccceEEECCCC------CEEEEEc-----
Q 021648          183 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----PVSRNSTLEASFSPEG------MFVISGS-----  247 (309)
Q Consensus       183 ~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~sp~g------~~l~s~s-----  247 (309)
                      ......++|.|||++|++--..|+|++++...+.........    .....-...++|+|+-      ++|...-     
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            344578899999998887766799999986554322111111    0113446789999874      3443331     


Q ss_pred             -----CCCcEEEEECCCC-------ce-EEEee---cCCCCCcEEEECCCeeEEEEccc
Q 021648          248 -----GDGSVYAWSVRSG-------KE-VASWM---SFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       248 -----~Dg~i~vwd~~~~-------~~-~~~~~---~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                           ....|.-|.+...       +. +..++   .|.  -..|+|.||+.++++.+.
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD  165 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGE  165 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECC
Confidence                 1234544555321       11 11111   122  356899999987776554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.79  E-value=0.49  Score=38.83  Aligned_cols=66  Identities=23%  Similarity=0.375  Sum_probs=46.6

Q ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCceEEEe------e--------cCCCCCcEEEECCCeeEEEEcc-ceEEEeeecC
Q 021648          235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASW------M--------SFDTEPPVIKWTPGSLMFVTGS-SELSFWIPDL  299 (309)
Q Consensus       235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~------~--------~~~~~v~~l~~~p~~~~l~s~~-~d~~~~~~~~  299 (309)
                      .+..++.++++...+|.+++||+.+++.+...      .        .....|..+..+.+|.-+++=+ .+.+.|.+++
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L   96 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL   96 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence            35568999999999999999999988764322      1        2334677788888887665544 3566666655


Q ss_pred             C
Q 021648          300 S  300 (309)
Q Consensus       300 ~  300 (309)
                      .
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.67  E-value=4.6  Score=32.65  Aligned_cols=167  Identities=14%  Similarity=0.140  Sum_probs=81.2

Q ss_pred             CceeEEEEccCCceEEEeeecccCEEEEEec--CCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce-eEEECCCCcEE
Q 021648           77 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLC--SSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVF  153 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~--~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~  153 (309)
                      ...||+||+.+++.+..-.-....+.+=-..  .|.-+.+|- .||.-..+|.++-++...+..++.- ..+++ +..++
T Consensus        67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw-~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d-~~~Li  144 (262)
T COG3823          67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW-KEGVAFKYDADTLEELGRFSYEGEGWGLTSD-DKNLI  144 (262)
T ss_pred             cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe-ccceeEEEChHHhhhhcccccCCcceeeecC-CcceE
Confidence            4679999999988765433221222221111  121123333 3666677777665555555444432 12222 22233


Q ss_pred             EEEECCEEEEEECCCCCcCCceEEEeCCC-CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCC-----
Q 021648          154 AVAFGGYIRMFDARKYEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS-----  227 (309)
Q Consensus       154 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-----  227 (309)
                      .+....+++.-|...+........+..+. ....+.+.+ =||..+|---.+..|...|..+|+....+...+..     
T Consensus       145 msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~  223 (262)
T COG3823         145 MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNL  223 (262)
T ss_pred             eeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCc
Confidence            22223345554554433211111122211 111222221 16776666666667777788888887766532211     


Q ss_pred             ----CCccceEEECCCC-CEEEEE
Q 021648          228 ----RNSTLEASFSPEG-MFVISG  246 (309)
Q Consensus       228 ----~~~~~~~~~sp~g-~~l~s~  246 (309)
                          .+....+++-|++ ++++||
T Consensus       224 ~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         224 DKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cccccccccceeecCcCCeEEEec
Confidence                1233457888876 666665

>PHA02790 Kelch-like protein; Provisional

Probab=92.53  E-value=8.9  Score=35.63  Aligned_cols=109  Identities=7%  Similarity=-0.008  Sum_probs=50.7

Q ss_pred             CCCEEEEeeCCC-----cEEEEEcCCCceeee--eeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe
Q 021648           22 SSSYLVTASDDE-----SIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF   94 (309)
Q Consensus        22 ~~~~l~t~s~D~-----~v~iWd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~   94 (309)
                      ++.+++.||.++     ++-.||..+++-...  +....... .+ ...++...+.+..++ ...+..||..+++=.. +
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~-~~sve~ydp~~n~W~~-~  346 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPN-PTSVERWFHGDAAWVN-M  346 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCC-CCceEEEECCCCeEEE-C
Confidence            345667887653     466778776543221  11111111 11 123443333332211 2457778876543111 1


Q ss_pred             eecc-cCEEEEEecCCCCeEEEecCCC---cEEEeeCCCceeee
Q 021648           95 KGHH-DRVVSLSLCSSKDCFISGSLDR---TVLLWDQRAEKCQG  134 (309)
Q Consensus        95 ~~h~-~~v~~v~~~~~~~~l~s~s~Dg---~v~~Wd~~~~~~~~  134 (309)
                      ..-. .........-+++..+.||.++   ++..||+++++...
T Consensus       347 ~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~  390 (480)
T PHA02790        347 PSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF  390 (480)
T ss_pred             CCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe
Confidence            1111 1111111123567778877654   57788988776543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.34  E-value=4.1  Score=36.32  Aligned_cols=102  Identities=12%  Similarity=0.202  Sum_probs=55.3

Q ss_pred             CCCeEEEEccCCCEEEEEe-----------CCC-cEEEEECCC--CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC
Q 021648          184 SDANVVKFSNDGRLMLLTT-----------MEG-HIHVLDSFR--GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD  249 (309)
Q Consensus       184 ~~~~~v~~s~dg~~l~~~~-----------~dg-~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D  249 (309)
                      .....+++.++|+++++-.           ..+ .|.+++...  |.......... .-.....+++.++| .++ +...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G-lyV-~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG-VYV-ATPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC-EEE-eCCC
Confidence            4456789999999888753           223 787776543  32211111111 11234568898998 434 4444


Q ss_pred             CcEEEE-ECCC-------CceEE-Eeec----CCCCCcEEEECCCeeEEEEcc
Q 021648          250 GSVYAW-SVRS-------GKEVA-SWMS----FDTEPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       250 g~i~vw-d~~~-------~~~~~-~~~~----~~~~v~~l~~~p~~~~l~s~~  289 (309)
                      . |..+ |...       .+.+. .+..    +......++|.|||++.++-+
T Consensus        91 ~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        91 D-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             e-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            4 4434 5421       11122 2322    123467899999998776654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.16  E-value=3.9  Score=38.14  Aligned_cols=115  Identities=15%  Similarity=0.115  Sum_probs=69.5

Q ss_pred             CCCeEEEEccCC----CEEEEEeCCCcEEEEECC-----CCeEeEEeeecCCCCCcc--ceEEECCCCCEEEEEcCCCcE
Q 021648          184 SDANVVKFSNDG----RLMLLTTMEGHIHVLDSF-----RGTLLSTYNVKPVSRNST--LEASFSPEGMFVISGSGDGSV  252 (309)
Q Consensus       184 ~~~~~v~~s~dg----~~l~~~~~dg~v~i~d~~-----~~~~~~~~~~~~~~~~~~--~~~~~sp~g~~l~s~s~Dg~i  252 (309)
                      ..|..+.++|-+    ..+++--..++|.||.+-     +++.+......-...-++  -.+-|+|....|+.-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            346667777643    356666778899999863     233333222110001111  136799998887777666655


Q ss_pred             EEEECCC-CceEEEeecCCCCCcEEEECCCeeEE-EEccceEEEeeec
Q 021648          253 YAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMF-VTGSSELSFWIPD  298 (309)
Q Consensus       253 ~vwd~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l-~s~~~d~~~~~~~  298 (309)
                      .+.+++. ...++.=..-.+.|.|.+|.+||+.| +..++-++.++||
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence            6666643 23343322445689999999999654 5556677777775

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=92.14  E-value=11  Score=36.77  Aligned_cols=193  Identities=15%  Similarity=0.284  Sum_probs=96.2

Q ss_pred             ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc----e-e--------eeeeee---------cCc--------eeEE
Q 021648           96 GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE----K-C--------QGLLRV---------QGR--------PAAA  145 (309)
Q Consensus        96 ~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~----~-~--------~~~~~~---------~~~--------~~~~  145 (309)
                      .-.+.|.+.+|+.|.+.+.....+++|.+.|..-.    . .        -..+++         .++        +...
T Consensus       110 ~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp  189 (1243)
T COG5290         110 KVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMP  189 (1243)
T ss_pred             cccCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCc
Confidence            34567888899999886555555778887763111    0 0        000110         000        0000


Q ss_pred             E-CCCCcEEEEEECCEEEEE--ECC--------CCCcCCceEEEeCCCC--------CCCeEEEEccCCCEEEEEeCCC-
Q 021648          146 Y-DDQGLVFAVAFGGYIRMF--DAR--------KYEKGPFDIFSVGGDI--------SDANVVKFSNDGRLMLLTTMEG-  205 (309)
Q Consensus       146 ~-~~~~~~~~~~~~~~i~~~--d~~--------~~~~~~~~~~~~~~~~--------~~~~~v~~s~dg~~l~~~~~dg-  205 (309)
                      + -+-|.+.++-.+..+..|  |..        ...+..+.+++-.|..        .....+.+-|+|..+++.+.|| 
T Consensus       190 ~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~  269 (1243)
T COG5290         190 YMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGC  269 (1243)
T ss_pred             ccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeeccCCC
Confidence            1 123456666666677777  421        1112234444433221        2224477899999999988766 


Q ss_pred             ----cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCce-EEEeecCCCCCcEEEECC
Q 021648          206 ----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE-VASWMSFDTEPPVIKWTP  280 (309)
Q Consensus       206 ----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~~p  280 (309)
                          .|..+.. .|-.-..+............++|+..... .+.+....+.+|-..+..- ++.- -.-..+.-+.|+|
T Consensus       270 ~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~v-lav~~~n~~~lwttkNyhWYLK~e-~~ip~~s~vkwhp  346 (1243)
T COG5290         270 STSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTV-LAVAEGNLLKLWTTKNYHWYLKVE-RQIPGISYVKWHP  346 (1243)
T ss_pred             CCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHH-HHHhhcceEEEEEccceEEEEEEe-ecCCCcceeeecc
Confidence                3555542 22111111110001112233556544433 3344567799999877432 2221 1223566688999


Q ss_pred             C--eeEEEEccce
Q 021648          281 G--SLMFVTGSSE  291 (309)
Q Consensus       281 ~--~~~l~s~~~d  291 (309)
                      .  ..++.+++.-
T Consensus       347 e~~nTl~f~d~~~  359 (1243)
T COG5290         347 EEKNTLLFRDGER  359 (1243)
T ss_pred             ccCcEEEEecCCe
Confidence            5  3566665553

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.83  E-value=8.4  Score=33.82  Aligned_cols=57  Identities=16%  Similarity=0.403  Sum_probs=37.0

Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEE---e-ecCCCCCcEEEECCCeeEEEEccceEEEe
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGKEVAS---W-MSFDTEPPVIKWTPGSLMFVTGSSELSFW  295 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~---~-~~~~~~v~~l~~~p~~~~l~s~~~d~~~~  295 (309)
                      .|.++++.-..+.|....+.+...+..   + ......+..+++.|||.++++...+.+||
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            556777776677888888765533322   2 23444688999999999888876655554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA03098 kelch-like protein; Provisional

Probab=91.78  E-value=12  Score=35.31  Aligned_cols=23  Identities=4%  Similarity=0.248  Sum_probs=16.4

Q ss_pred             CCCEEEEEcCC-----CcEEEEECCCCc
Q 021648          239 EGMFVISGSGD-----GSVYAWSVRSGK  261 (309)
Q Consensus       239 ~g~~l~s~s~D-----g~i~vwd~~~~~  261 (309)
                      +++.++.||.+     ..+.+||..+.+
T Consensus       487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        487 NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            67777777765     468888887643

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.21  E-value=16  Score=35.79  Aligned_cols=33  Identities=12%  Similarity=0.109  Sum_probs=26.2

Q ss_pred             cccCEEEEEecCC---CCeEEEecCCCcEEEeeCCC
Q 021648           97 HHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRA  129 (309)
Q Consensus        97 h~~~v~~v~~~~~---~~~l~s~s~Dg~v~~Wd~~~  129 (309)
                      +...|..+.|+|.   +.+|+.=..|+++|+||+..
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            4457889999985   46777777899999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.12  E-value=3  Score=37.69  Aligned_cols=79  Identities=23%  Similarity=0.433  Sum_probs=53.1

Q ss_pred             CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEEC----CC----------------CC-EE
Q 021648          185 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS----PE----------------GM-FV  243 (309)
Q Consensus       185 ~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~s----p~----------------g~-~l  243 (309)
                      .+..++.+|++++.++...-|+|.++|..++..+.-.+...   .  -.+.|-    +.                .. .+
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR---d--Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv  383 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR---D--AQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV  383 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc---c--ceEEEEEeecccccccccccccCCCCcceEEEE
Confidence            46778999999998888778999999998877665433211   0  011221    11                11 22


Q ss_pred             EEEcCCCcEEEEECCCCceEEEeec
Q 021648          244 ISGSGDGSVYAWSVRSGKEVASWMS  268 (309)
Q Consensus       244 ~s~s~Dg~i~vwd~~~~~~~~~~~~  268 (309)
                      +=+-.-|.|.||.++.+.++..+.-
T Consensus       384 IyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  384 IYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEeccCCeEEEEecCCCCEEEEEEe
Confidence            3445678999999999999887753

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=90.92  E-value=8.4  Score=32.15  Aligned_cols=111  Identities=16%  Similarity=0.218  Sum_probs=62.2

Q ss_pred             EEccCCCEEEEEeC-C--CcEEEEECCC---CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC-cEEEEECCC-Cc
Q 021648          190 KFSNDGRLMLLTTM-E--GHIHVLDSFR---GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVYAWSVRS-GK  261 (309)
Q Consensus       190 ~~s~dg~~l~~~~~-d--g~v~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg-~i~vwd~~~-~~  261 (309)
                      .+-|||+++.+|+. +  ..+++++.-.   .....+....-.....--.+.--|||+.|+.||.+. +...|.-.. ..
T Consensus        73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~  152 (243)
T PF07250_consen   73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP  152 (243)
T ss_pred             CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Confidence            36689999998875 2  3688888643   111111100001111111234458999999998885 344454422 11


Q ss_pred             eEEEe--ec------CCCCCcEEEECCCeeEEEEccceEEEeeecCC
Q 021648          262 EVASW--MS------FDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS  300 (309)
Q Consensus       262 ~~~~~--~~------~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~  300 (309)
                      ....+  ..      ..---+-+-..|+|++|+.+..+..++.+.-.
T Consensus       153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n  199 (243)
T PF07250_consen  153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTN  199 (243)
T ss_pred             CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCC
Confidence            11111  11      01123457778999999999988888777544

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.86  E-value=0.47  Score=44.77  Aligned_cols=38  Identities=26%  Similarity=0.564  Sum_probs=28.9

Q ss_pred             cceEEEEeCC----CCCEEEEeeCCCcEEEEEcCCCceeeee
Q 021648           12 GRISSMDFHK----SSSYLVTASDDESIRLYDVTAATCLKTI   49 (309)
Q Consensus        12 ~~V~~i~~s~----~~~~l~t~s~D~~v~iWd~~~~~~~~~~   49 (309)
                      +.+.++++++    +..+|+|.+.|+++|+||+.++.|+++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            3455666666    6789999999999999999999997654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.50  E-value=1.6  Score=41.27  Aligned_cols=74  Identities=18%  Similarity=0.291  Sum_probs=43.2

Q ss_pred             cCCCEEEEEeCCCcEEEEECCC----CeEeEEeeecCC-------------------CCCccceEEECC----CCCEEEE
Q 021648          193 NDGRLMLLTTMEGHIHVLDSFR----GTLLSTYNVKPV-------------------SRNSTLEASFSP----EGMFVIS  245 (309)
Q Consensus       193 ~dg~~l~~~~~dg~v~i~d~~~----~~~~~~~~~~~~-------------------~~~~~~~~~~sp----~g~~l~s  245 (309)
                      ++...++.+..||.+..+....    +...........                   .......++.++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3566777777888777776543    222222111000                   112234456666    7789999


Q ss_pred             EcCCCcEEEEECCCCceEEEe
Q 021648          246 GSGDGSVYAWSVRSGKEVASW  266 (309)
Q Consensus       246 ~s~Dg~i~vwd~~~~~~~~~~  266 (309)
                      .+.|+++|+||+.+++++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=90.05  E-value=12  Score=32.41  Aligned_cols=105  Identities=20%  Similarity=0.237  Sum_probs=53.4

Q ss_pred             CCeEEEEccCCCEEEEEeCCCcEEEEE-CCCCeEeEEeeecC-CCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 021648          185 DANVVKFSNDGRLMLLTTMEGHIHVLD-SFRGTLLSTYNVKP-VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  262 (309)
Q Consensus       185 ~~~~v~~s~dg~~l~~~~~dg~v~i~d-~~~~~~~~~~~~~~-~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~  262 (309)
                      .+..+.|+|++.+.+.+ ..|.++.=+ ....+......... .....+..++|.|++...|+|+.. ++.+ ....|+.
T Consensus       188 riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~~-S~DgGkt  264 (302)
T PF14870_consen  188 RIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TLLV-STDGGKT  264 (302)
T ss_dssp             -EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--EEE-ESSTTSS
T ss_pred             eehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cEEE-eCCCCcc
Confidence            45677888887765544 777877765 22222221111111 112236789999998887777654 3433 3333332


Q ss_pred             ---EEEeecCCCCCcEEEECCCeeEEEEccceE
Q 021648          263 ---VASWMSFDTEPPVIKWTPGSLMFVTGSSEL  292 (309)
Q Consensus       263 ---~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~  292 (309)
                         ...-...++....+.|.++.+.|+-|...+
T Consensus       265 W~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~  297 (302)
T PF14870_consen  265 WQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV  297 (302)
T ss_dssp             -EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred             ceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence               222223456788899988888998887653

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=89.98  E-value=7.2  Score=32.18  Aligned_cols=100  Identities=10%  Similarity=0.116  Sum_probs=63.3

Q ss_pred             EEEeCCCCCE-EEEeeCCCcEEEEE--cCCCce-----eeeeec---c-ccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648           16 SMDFHKSSSY-LVTASDDESIRLYD--VTAATC-----LKTINS---K-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus        16 ~i~~s~~~~~-l~t~s~D~~v~iWd--~~~~~~-----~~~~~~---~-~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      .++|+.+.+. -.+-+.+-+|.-||  ..+|..     +..++-   . ......+++...|...+++- +  -++|.-.
T Consensus       162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~-n--g~~V~~~  238 (310)
T KOG4499|consen  162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF-N--GGTVQKV  238 (310)
T ss_pred             cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe-c--CcEEEEE
Confidence            5778876654 47778899999998  445532     222221   1 11122344444555444443 2  3589999


Q ss_pred             EccCCceEEEeeecccCEEEEEecCC-CC-eEEEecC
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSS-KD-CFISGSL  118 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~-~~-~l~s~s~  118 (309)
                      |..+|+.+..++-....|++++|-.. -. +.+|+..
T Consensus       239 dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  239 DPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             CCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence            99999999999988999999999743 22 4455544

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.81  E-value=9.4  Score=30.93  Aligned_cols=172  Identities=16%  Similarity=0.126  Sum_probs=92.3

Q ss_pred             CCCeEEEecC--CCcEEEeeCCCceeeeeeeecCceeEEEC-----CCCcEEEEE-ECCEEEEEECCCCCcCCceEEEeC
Q 021648          109 SKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYD-----DQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVG  180 (309)
Q Consensus       109 ~~~~l~s~s~--Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~  180 (309)
                      ++.++.|.+.  ...|+.||+++++.+....... + ..+.     -...+.... .++.-..+|.+.++  .+..+...
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~-~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~--~lg~~~y~  130 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-D-TVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE--ELGRFSYE  130 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCC-c-cccccceeeccceEEEEEeccceeEEEChHHhh--hhcccccC
Confidence            4456666664  4589999999887665443331 0 0110     112233333 35666677765432  11122222


Q ss_pred             CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee--cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648          181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV--KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       181 ~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~  258 (309)
                      |+     .=....|++.+.++....+++.-|+.+-....+...  ..........+.| -||...|-.-.+..|-..+..
T Consensus       131 Ge-----GWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~  204 (262)
T COG3823         131 GE-----GWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPD  204 (262)
T ss_pred             Cc-----ceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCC
Confidence            21     123345666677777677777767654333332221  1111222334444 367777777666777777777


Q ss_pred             CCceEEEe------------ecCCCCCcEEEECCCe-eEEEEccc
Q 021648          259 SGKEVASW------------MSFDTEPPVIKWTPGS-LMFVTGSS  290 (309)
Q Consensus       259 ~~~~~~~~------------~~~~~~v~~l~~~p~~-~~l~s~~~  290 (309)
                      +|+.++.+            ..|..-.+.+|+-|++ +++++|-.
T Consensus       205 sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~  249 (262)
T COG3823         205 SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL  249 (262)
T ss_pred             CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence            77765433            1233356779999986 78888753

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.19  E-value=2.6  Score=38.07  Aligned_cols=100  Identities=17%  Similarity=0.343  Sum_probs=67.0

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee----eeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL----KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      -.|+|.+|+||+|.+.||.-=.|++|.+.+....+..    ++-......+...+|+.+ ..++.....|    +.+|-.
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G----~e~y~v  139 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG----IEFYQV  139 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC----eEEEEE
Confidence            4679999999999999999999999999987422221    122223334666677655 4555554333    555554


Q ss_pred             cC-CceEEEeeecccCEEEEEecCCCCeEE
Q 021648           86 HD-NKYLRYFKGHHDRVVSLSLCSSKDCFI  114 (309)
Q Consensus        86 ~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~  114 (309)
                      .. ...++..+.|...|+--.|+++.+.+.
T Consensus       140 ~pekrslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  140 LPEKRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             chhhhhhhhhhhcccCccEEEEccccceEe
Confidence            33 234566677888899989999877433

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.78  E-value=7.2  Score=35.33  Aligned_cols=47  Identities=13%  Similarity=0.103  Sum_probs=38.8

Q ss_pred             EecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecc
Q 021648            6 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK   52 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~   52 (309)
                      .|......+.+|..+|++++.|....=|.|.|+|+.++..++.+++=
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY  348 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY  348 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC
Confidence            34555667899999999999888877889999999999888877653

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=88.60  E-value=28  Score=34.79  Aligned_cols=100  Identities=15%  Similarity=0.144  Sum_probs=55.4

Q ss_pred             CeEEEEccC-CCEEEEEeC----------CCcEEEEECCCCeEeEEeeecCCCCCccceE-EECCCCCEEEEEcCCCcEE
Q 021648          186 ANVVKFSND-GRLMLLTTM----------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA-SFSPEGMFVISGSGDGSVY  253 (309)
Q Consensus       186 ~~~v~~s~d-g~~l~~~~~----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~sp~g~~l~s~s~Dg~i~  253 (309)
                      +.++.|..| +.+++.|+.          .|.|.+|....+..+....-+ .-.+.+.++ .|  +|+++|.=  ...|+
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL~~f--ngkllA~I--n~~vr  851 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYALVEF--NGKLLAGI--NQSVR  851 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeehhhh--CCeEEEec--CcEEE
Confidence            344457666 677777752          367777776552222211100 112333332 23  67776654  46799


Q ss_pred             EEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648          254 AWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       254 vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      +|++.+.+.+..--.|...+..+...-.+..++.|..
T Consensus       852 Lye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl  888 (1096)
T KOG1897|consen  852 LYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDL  888 (1096)
T ss_pred             EEEccccceehhhhcccCCeEEEEEEecCcEEEEeec
Confidence            9999887665544445555666666555656655554

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=87.63  E-value=1.3  Score=43.22  Aligned_cols=77  Identities=21%  Similarity=0.287  Sum_probs=47.1

Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccc-----------eEEECCCCCEEEEEcCCCcEEEEECC-
Q 021648          191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-----------EASFSPEGMFVISGSGDGSVYAWSVR-  258 (309)
Q Consensus       191 ~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-----------~~~~sp~g~~l~s~s~Dg~i~vwd~~-  258 (309)
                      |-++.-++..+-.++.|++....+... .-+..   |...+.           -...||||+.+|++..||.++.|.+. 
T Consensus       191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs---Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi  266 (1283)
T KOG1916|consen  191 IAVNKVYICYGLKGGEIRLLNINRALR-SLFRS---HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI  266 (1283)
T ss_pred             cccccceeeeccCCCceeEeeechHHH-HHHHh---cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence            334556666777788888765433221 11111   222222           23479999999999999988877753 


Q ss_pred             ----CCceEEEeecCCC
Q 021648          259 ----SGKEVASWMSFDT  271 (309)
Q Consensus       259 ----~~~~~~~~~~~~~  271 (309)
                          ..+++..++.|.+
T Consensus       267 ~g~~~~rclhewkphd~  283 (1283)
T KOG1916|consen  267 TGKIVHRCLHEWKPHDK  283 (1283)
T ss_pred             eccccHhhhhccCCCCC
Confidence                3345666777773

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=86.99  E-value=20  Score=32.61  Aligned_cols=30  Identities=17%  Similarity=0.478  Sum_probs=24.7

Q ss_pred             ccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          230 STLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      .+..++..+..+.+++.+.+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            377888888889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=86.63  E-value=25  Score=32.00  Aligned_cols=50  Identities=26%  Similarity=0.149  Sum_probs=34.2

Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      .+|..=|.||.+.+++-+.-.....++. ---+.-++|.|....|+++++.
T Consensus       146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss  195 (418)
T PF14727_consen  146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSS  195 (418)
T ss_pred             eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCc
Confidence            4666669999999999876543333433 2234558888887777777765

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=86.60  E-value=18  Score=30.37  Aligned_cols=149  Identities=18%  Similarity=0.241  Sum_probs=77.2

Q ss_pred             CEEEEEecCCCCeEEEec---CCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEEC-CEEEEEE-CCCCCcCCc
Q 021648          100 RVVSLSLCSSKDCFISGS---LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG-GYIRMFD-ARKYEKGPF  174 (309)
Q Consensus       100 ~v~~v~~~~~~~~l~s~s---~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d-~~~~~~~~~  174 (309)
                      .+.+.+++++++.++...   ....+.++..... ....+.........+++.+.+.+...+ ...+++. .........
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            578889999998766554   2334555543222 111111111222345566777766543 3444442 221111111


Q ss_pred             eEEEeCCCCCCCeEEEEccCCCEEEEEe---CCCcEEEEECC---CC---eEeEEeeecCCCCCccceEEECCCCCEEEE
Q 021648          175 DIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSF---RG---TLLSTYNVKPVSRNSTLEASFSPEGMFVIS  245 (309)
Q Consensus       175 ~~~~~~~~~~~~~~v~~s~dg~~l~~~~---~dg~v~i~d~~---~~---~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s  245 (309)
                      .+... .....|..+.+||||..++.-.   .+++|.+=-+.   .+   .+.............+..++|.+++..++.
T Consensus       104 ~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~  182 (253)
T PF10647_consen  104 EVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL  182 (253)
T ss_pred             Eeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence            11111 1111689999999999887765   35677664321   22   111122222222346678999999988877


Q ss_pred             EcCCC
Q 021648          246 GSGDG  250 (309)
Q Consensus       246 ~s~Dg  250 (309)
                      +...+
T Consensus       183 ~~~~~  187 (253)
T PF10647_consen  183 GRSAG  187 (253)
T ss_pred             eCCCC
Confidence            75544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK13684 Ycf48-like protein; Provisional

Probab=85.77  E-value=24  Score=31.03  Aligned_cols=147  Identities=11%  Similarity=0.093  Sum_probs=73.4

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcE-EEEEcCCCceeeeee-ccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESI-RLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v-~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      .+.+.++.+.|++.+++++. .|.+ +.+|- .++.-.... .....+..+.+.+++..++++.    .+.+++-.-..+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~----~G~~~~~s~d~G  245 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR----GGQIRFNDPDDL  245 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEec----CCEEEEccCCCC
Confidence            45688999999887776664 4443 33332 223222222 2234567777888777666553    334432223333


Q ss_pred             ceEEEeeec----ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee-c----CceeEEECCCCcEEEEEECC
Q 021648           89 KYLRYFKGH----HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-Q----GRPAAAYDDQGLVFAVAFGG  159 (309)
Q Consensus        89 ~~~~~~~~h----~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~  159 (309)
                      +.-.....+    ...+.++.+.+++.. +.++.+|.+.. ....++.-..++. .    ......+.+++..++++..|
T Consensus       246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G  323 (334)
T PRK13684        246 ESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG  323 (334)
T ss_pred             CccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence            321111111    134778888887654 45556776653 3333322111111 1    11123444555666667666


Q ss_pred             EEEEEE
Q 021648          160 YIRMFD  165 (309)
Q Consensus       160 ~i~~~d  165 (309)
                      .|--++
T Consensus       324 ~il~~~  329 (334)
T PRK13684        324 VLLRYV  329 (334)
T ss_pred             eEEEec
Confidence            665543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=84.67  E-value=44  Score=33.12  Aligned_cols=72  Identities=10%  Similarity=0.138  Sum_probs=45.0

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeeccccce---------e----EEEEec--CCCEEEEEcCC-------CCCcee
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGV---------D----LVCFTS--HPTTVIYSSKN-------GWDESL   80 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v---------~----~~~~~~--~~~~~~~~s~~-------g~d~~i   80 (309)
                      +.++..++.|+.+.-.|.++|+.+..+.... .+         .    ...-.|  .+..++.++..       ..++.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            3477788889999999999999886553211 00         0    000001  12345554321       125789


Q ss_pred             EEEEccCCceEEEee
Q 021648           81 RLLSLHDNKYLRYFK   95 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~   95 (309)
                      +-+|.++|+.+..+.
T Consensus       339 ~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       339 RAFDVNTGALVWAWD  353 (764)
T ss_pred             EEEECCCCcEeeEEe
Confidence            999999999988775

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=84.42  E-value=40  Score=32.48  Aligned_cols=156  Identities=12%  Similarity=0.167  Sum_probs=84.9

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceee--eeecc-ccceeEEEEecC------CCEEEEEcC-CCCCcee
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK--TINSK-KYGVDLVCFTSH------PTTVIYSSK-NGWDESL   80 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~--~~~~~-~~~v~~~~~~~~------~~~~~~~s~-~g~d~~i   80 (309)
                      +..|-.|.|.++++.++..-..|.|.+||.+.+....  .+... ...+..-+|.++      ...++..+. .+..-..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            5678899999999999999999999999993222111  22111 111111122221      223333332 2334567


Q ss_pred             EEEEcc-CCceEEEee---ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC----c---eeEEECCC
Q 021648           81 RLLSLH-DNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG----R---PAAAYDDQ  149 (309)
Q Consensus        81 ~~~d~~-~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~----~---~~~~~~~~  149 (309)
                      |++.+. ....+..+.   -+........|+.+...|.-- .++++.+|++-.-+....+.++.    .   ......++
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s  287 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS  287 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Confidence            888871 122223332   222334445566543333332 68899999986666555555441    1   11122344


Q ss_pred             CcEEEEEECCEEEEEECC
Q 021648          150 GLVFAVAFGGYIRMFDAR  167 (309)
Q Consensus       150 ~~~~~~~~~~~i~~~d~~  167 (309)
                      ...+..+.++.|++.|+.
T Consensus       288 ~nRvLLs~~nkIyLld~~  305 (670)
T PF10395_consen  288 PNRVLLSVNNKIYLLDLK  305 (670)
T ss_pred             CCeEEEEcCCEEEEEeeh
Confidence            445556778899999964

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.28  E-value=42  Score=32.59  Aligned_cols=182  Identities=13%  Similarity=0.142  Sum_probs=87.3

Q ss_pred             CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE---EeeecccCEEEEEecCC
Q 021648           33 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR---YFKGHHDRVVSLSLCSS  109 (309)
Q Consensus        33 ~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~---~~~~h~~~v~~v~~~~~  109 (309)
                      -.|+|++. +|..+..+.-.+..+-...|+.+...++. ..   |+++.+|++.......   -+......|..+.+..+
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v-~k---~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~  138 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICV-QK---DGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN  138 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEE-ec---cceEEEeecchhhhcccccccccccCceeEEEEecC
Confidence            45888886 46666555443334555666665554444 33   7899999985432111   01222334666666556


Q ss_pred             CCeEEEecCCCcEEEeeCCCceeeeeeeecC----ceeEEECCCCcEEE--EEECCE--EEEEECCCCCcCCceEEEeCC
Q 021648          110 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG----RPAAAYDDQGLVFA--VAFGGY--IRMFDARKYEKGPFDIFSVGG  181 (309)
Q Consensus       110 ~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~--i~~~d~~~~~~~~~~~~~~~~  181 (309)
                      |-.+.+.+ +.-+.+-+.+.......-..+.    ..+....+++....  ...+-.  ..++....   .......+..
T Consensus       139 GVavlt~~-g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~---~~~q~~~~~~  214 (829)
T KOG2280|consen  139 GVAVLTVS-GQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEE---SRVQLHALSW  214 (829)
T ss_pred             ceEEEecC-CcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceec---ccccccccCC
Confidence            65555543 2223333332221111111111    11222222211111  111100  01111100   0001111111


Q ss_pred             CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648          182 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  223 (309)
Q Consensus       182 ~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~  223 (309)
                      ..+.+.-+++||+.++|+.-...|.|.+.+....+.+.++++
T Consensus       215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~  256 (829)
T KOG2280|consen  215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC  256 (829)
T ss_pred             CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence            224566788999999999999999999988776666666553

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=83.87  E-value=29  Score=33.27  Aligned_cols=110  Identities=9%  Similarity=0.123  Sum_probs=65.0

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEe--cCCCEEEEEcCCCCCceeEEEEcc---
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFT--SHPTTVIYSSKNGWDESLRLLSLH---   86 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~~~~s~~g~d~~i~~~d~~---   86 (309)
                      ..+-+.-+.-++..+.-+.-.++.|||...+.....-. .....|..+.|.  |+++.+++..   ..+.|.++.-.   
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG---f~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG---FPHHVLLYTQLRYD  107 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE---cCcEEEEEEccchh
Confidence            34445555545554444455688999998776432221 234457777665  4566666653   46778877532   


Q ss_pred             --CCc----eEEE--eeecc-cCEEEEEecCCCCeEEEecCCCcEEEeeC
Q 021648           87 --DNK----YLRY--FKGHH-DRVVSLSLCSSKDCFISGSLDRTVLLWDQ  127 (309)
Q Consensus        87 --~~~----~~~~--~~~h~-~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~  127 (309)
                        +..    .++.  +..|+ .+|.+..|.++|..++.++  ..+.+.|-
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence              111    1222  34455 5799999999997666553  46666663

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.65  E-value=5.7  Score=22.36  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=23.3

Q ss_pred             CCCCEE-EEeeCCCcEEEEEcCCCceeeeeecc
Q 021648           21 KSSSYL-VTASDDESIRLYDVTAATCLKTINSK   52 (309)
Q Consensus        21 ~~~~~l-~t~s~D~~v~iWd~~~~~~~~~~~~~   52 (309)
                      |++++| ++.-.+++|.++|..+++.+..+...
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            566655 44556889999999888877776653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.30  E-value=4.3  Score=40.77  Aligned_cols=113  Identities=11%  Similarity=0.066  Sum_probs=66.7

Q ss_pred             EEEEccCCCEEEEE--eCCCcEEEEECCCCeEeE-----Eeeec---CCCCCccceEEECCCC-CEEEEEcCCCcEEEEE
Q 021648          188 VVKFSNDGRLMLLT--TMEGHIHVLDSFRGTLLS-----TYNVK---PVSRNSTLEASFSPEG-MFVISGSGDGSVYAWS  256 (309)
Q Consensus       188 ~v~~s~dg~~l~~~--~~dg~v~i~d~~~~~~~~-----~~~~~---~~~~~~~~~~~~sp~g-~~l~s~s~Dg~i~vwd  256 (309)
                      ....++|++..++-  +.+..|+.||+++-+.-.     .+..+   -....-..++.|+|.- ...|....|+.|+|..
T Consensus       105 ~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~  184 (1405)
T KOG3630|consen  105 IFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKS  184 (1405)
T ss_pred             EEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhh
Confidence            34455666554433  333478889986532211     11100   0112233467788853 4567778899999988


Q ss_pred             CCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeecCC
Q 021648          257 VRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS  300 (309)
Q Consensus       257 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~~~  300 (309)
                      +.-.....+-.......++++|+|.|++++.|...  ..=+.|.|.
T Consensus       185 ~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le  230 (1405)
T KOG3630|consen  185 TKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE  230 (1405)
T ss_pred             hhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc
Confidence            85543332222345678999999999999998864  222556554

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.49  E-value=52  Score=33.74  Aligned_cols=30  Identities=17%  Similarity=0.377  Sum_probs=25.7

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCcEEEEEcC
Q 021648           12 GRISSMDFHKSSSYLVTASDDESIRLYDVT   41 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~   41 (309)
                      ..-..++|+|...++|-+..+|.++++-..
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEeccc
Confidence            355678999999999999999999999653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	309
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-19
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-19
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-19
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-19
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-19
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-19
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-04
2h9l_A	329	Wdr5delta23 Length = 329		2e-19
2h9l_A	329	Wdr5delta23 Length = 329		5e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-19
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-19
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-19
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-19
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-19
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		5e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-19
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-19
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-19
2gnq_A	336	Structure Of Wdr5 Length = 336		6e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		8e-19
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		8e-19
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-08
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		6e-08
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-07
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-07
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-07
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-07
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		8e-07
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-06
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		5e-05
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		9e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		9e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-04

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 92  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 205
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 264
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 265 NLVYIWNLQT-KEI 277

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 50  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
           +              VF                                     F+    
Sbjct: 110 KGHSN---------YVFCC----------------------------------NFNPQSN 126
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 257 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 309
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 184 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 240

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 27  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 86
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 87  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 143
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 200
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 201 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 259
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 260 NLVYIWNLQT-KEI 272

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 45  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 104
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
           +              VF                                     F+    
Sbjct: 105 KGHSN---------YVFCC----------------------------------NFNPQSN 121
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Query: 257 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 309
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 179 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 235

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 22  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 81
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 82  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 138
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 195
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 196 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 254
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 255 NLVYIWNLQT-KEI 267

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 40  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 99
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
           +              VF                                     F+    
Sbjct: 100 KGHSN---------YVFCC----------------------------------NFNPQSN 116
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Query: 257 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 309
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 174 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 230

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 92  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 205
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 264
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 265 NLVYIWNLQT-KEI 277

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 50  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
           +              VF                                     F+    
Sbjct: 110 KGHSN---------YVFCC----------------------------------NFNPQSN 126
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 257 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 309
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 184 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 240

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 25  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 84
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 85  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 141
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 142 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 198
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 199 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 257
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 258 NLVYIWNLQT-KEI 270

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 43  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 102
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
           +              VF                                     F+    
Sbjct: 103 KGHSN---------YVFCC----------------------------------NFNPQSN 119
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Query: 257 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 309
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 177 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 233

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 31  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 90
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 91  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 147
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 204
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 205 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 263
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 264 NLVYIWNLQT-KEI 276

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 49  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 108
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
           +              VF                                     F+    
Sbjct: 109 KGHSN---------YVFCC----------------------------------NFNPQSN 125
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Query: 257 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 309
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 183 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 239

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 43  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 102
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 103 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 159
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 216
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 217 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 275
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 276 NLVYIWNLQT-KEI 288

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 61  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 120
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
           +              VF                                     F+    
Sbjct: 121 KGHSN---------YVFCC----------------------------------NFNPQSN 137
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Query: 257 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 309
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 195 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 251

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 92  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 205
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 264
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 265 NLVYIWNLQT-KEI 277

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 50  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
           +              VF                                     F+    
Sbjct: 110 KGHSN---------YVFCC----------------------------------NFNPQSN 126
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 257 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 309
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 184 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 240

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 26  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 86  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 199
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 258
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 259 NLVYIWNLQT-KEI 271

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 44  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
           +              VF                                     F+    
Sbjct: 104 KGHSN---------YVFCC----------------------------------NFNPQSN 120
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Query: 257 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 309
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 178 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 234

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 26  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 86  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 199
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 258
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 259 NLVYIWNLQT-KEI 271

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 44  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
           +              VF                                     F+    
Sbjct: 104 KGHSN---------YVFCC----------------------------------NFNPQSN 120
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Query: 257 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 309
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 178 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 234

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 48  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 108 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 164
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 221
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 280
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 281 NLVYIWNLQT-KEI 293

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 66  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 125
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
           +              VF                                     F+    
Sbjct: 126 KGHSN---------YVFCC----------------------------------NFNPQSN 142
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Query: 257 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 309
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 200 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 256

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 124/254 (48%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L  +S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 29  VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 89  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 202
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 261
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 262 NLVYIWNLQT-KEI 274

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
           +              VF                                     F+    
Sbjct: 107 KGHSN---------YVFCC----------------------------------NFNPQSN 123
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 257 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 309
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 181 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 237

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 89  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 202
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 261
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 262 NLVYIWNLQT-KEI 274

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
           +              VF                                     F+    
Sbjct: 107 KGHSN---------YVFCC----------------------------------NFNPQSN 123
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 257 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 309
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 181 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 237

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 89  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 202
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 261
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 262 NLVYIWNLQT-KEI 274

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
           +              VF                                     F+    
Sbjct: 107 KGHSN---------YVFCC----------------------------------NFNPQSN 123
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 257 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 309
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 181 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 237

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 50  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 109
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 110 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 166
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 223
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 282
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 283 NLVYIWNLQT-KEI 295

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 68  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 127
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
           +              VF                                     F+    
Sbjct: 128 KGHSN---------YVFCC----------------------------------NFNPQSN 144
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Query: 257 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 309
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 202 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 258

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 124/254 (48%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +   C 
Sbjct: 89  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 202
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 261
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 262 NMVYIWNLQT-KEI 274

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 62/243 (25%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 137 RVQGRP--AAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 193
           +          ++ Q  L+ + +F   +R++D +                          
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------------------------ 142
Query: 194 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 253
               M L T+  H                  PVS        F+ +G  ++S S DG   
Sbjct: 143 ----MCLKTLPAH----------------SDPVS-----AVHFNRDGSLIVSSSYDGLCR 177
Query: 254 AWSVRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYV 306
            W   SG+ + + +  D  PPV  +K++P    ++  T  ++L  W  D SK   L  Y 
Sbjct: 178 IWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNDLKLW--DYSKGKCLKTYT 234
Query: 307 GRK 309
           G K
Sbjct: 235 GHK 237

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 124/254 (48%), Gaps = 12/254 (4%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +   C 
Sbjct: 89  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 134 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 202
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 249
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 261
Query: 250 GSVYAWSVRSGKEV 263
             VY W++++ KE+
Sbjct: 262 NMVYIWNLQT-KEI 274

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 62/243 (25%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 137 RVQGRP--AAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 193
           +          ++ Q  L+ + +F   +R++D +                          
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------------------------ 142
Query: 194 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 253
               M L T+  H                  PVS        F+ +G  ++S S DG   
Sbjct: 143 ----MCLKTLPAH----------------SDPVS-----AVHFNRDGSLIVSSSYDGLCR 177
Query: 254 AWSVRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYV 306
            W   SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y 
Sbjct: 178 IWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 234
Query: 307 GRK 309
           G K
Sbjct: 235 GHK 237

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 47/244 (19%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS-S 72
           +S+  F  S   ++TAS D +  L+DV +   L++ +   +G D++C    P+    +  
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG--HGADVLCLDLAPSETGNTFV 214
Query: 73  KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 132
             G D+   +  +   + ++ F+ H   V S+    S D F SGS D T  L+D RA+  
Sbjct: 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-- 272
Query: 133 QGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS 192
                   R  A Y  + ++F                                A+ V FS
Sbjct: 273 --------REVAIYSKESIIFG-------------------------------ASSVDFS 293
Query: 193 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 252
             GRL+     +  I+V D  +G+ +S       +R STL    SP+G    SGS D ++
Sbjct: 294 LSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGHENRVSTLR--VSPDGTAFCSGSWDHTL 350
Query: 253 YAWS 256
             W+
Sbjct: 351 RVWA 354

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 14/220 (6%)
Query: 89  KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAY 146
           K  R  KGH ++V+ +  C  K   +S S D  V++WD      +  + +      A AY
Sbjct: 55  KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 147 DDQGLVFAVAFGG-------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML 199
              G   A+A GG       Y   FD  K E       SV    +  +   F+N    +L
Sbjct: 115 APSGC--AIACGGLDNKCSVYPLTFD--KNENMAAKKKSVAMHTNYLSACSFTNSDMQIL 170
Query: 200 LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 259
             + +G   + D   G LL +++         L+ + S  G   +SG  D     W +RS
Sbjct: 171 TASGDGTCALWDVESGQLLQSFHGHGADV-LCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229
Query: 260 GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 299
           G+ V ++ + +++   +++ P    F +GS + +  + DL
Sbjct: 230 GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 6   SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 64
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 65  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 115
              V          Y+    WD++LRL  +   +  + F GH   V+S+ +       IS
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 116 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 168
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +M  A  
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 169 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 228
             +   +   +G + S+ N +  S DG L+     +G I + +      + T +    ++
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ 237
Query: 229 NSTLEASFSPEGMFVISGSGDG 250
           +     +FSP   ++ + +  G
Sbjct: 238 DEVFSLAFSPNRYWLAAATATG 259

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 6   SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 64
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 65  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 115
              V          Y+    WD++LRL  +   +  + F GH   V+S+ +       IS
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 116 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 168
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +M  A  
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 169 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 228
             +   +   +G + S+ N +  S DG L+     +G I + +      + T +    ++
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ 237
Query: 229 NSTLEASFSPEGMFVISGSGDG 250
           +     +FSP   ++ + +  G
Sbjct: 238 DEVFSLAFSPNRYWLAAATATG 259

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 6   SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 64
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 65  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 115
              V          Y+    WD++LRL  +   +  + F GH   V+S+ +       IS
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 116 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 168
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +M  A  
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 169 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 228
             +   +   +G + S+ N +  S DG L+     +G I + +      + T +    ++
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ 237
Query: 229 NSTLEASFSPEGMFVISGSGDG 250
           +     +FSP   ++ + +  G
Sbjct: 238 DEVFSLAFSPNRYWLAAATATG 259

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 6   SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 64
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 65  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 115
              V          Y+    WD++LRL  +   +  + F GH   V+S+ +       IS
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 116 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 168
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +M  A  
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 169 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 228
             +   +   +G + S+ N +  S DG L+     +G I + +      + T +    ++
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ 237
Query: 229 NSTLEASFSPEGMFVISGSGDG 250
           +     +FSP   ++ + +  G
Sbjct: 238 DEVFSLAFSPNRYWLAAATATG 259

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 6   SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 64
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 6   TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 58
Query: 65  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 115
              V          Y+    WD++LRL  +   +  + F GH   V+S+ +       IS
Sbjct: 59  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 118
Query: 116 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 168
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +M  A  
Sbjct: 119 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 176
Query: 169 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 228
             +   +   +G + S+ N +  S DG L+     +G I + +      + T +    ++
Sbjct: 177 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ 231
Query: 229 NSTLEASFSPEGMFVISGSGDG 250
           +     +FSP   ++ + +  G
Sbjct: 232 DEVFSLAFSPNRYWLAAATATG 253

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 102/247 (41%), Gaps = 29/247 (11%)
Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           ++ + FH   S +V+AS+D +I+++D       +T+      V  + F  H   ++ S  
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF-DHSGKLLASCS 169
Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
              D +++L      + +R   GH   V S+S+  + D  +S S D+T+ +W+ +   C 
Sbjct: 170 A--DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 134 GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 193
                                     ++RM   R  + G   I S   D +    V  + 
Sbjct: 228 KTF------------------TGHREWVRM--VRPNQDGTL-IASCSNDQTVRVWVVATK 266
Query: 194 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 253
           + +  L      H HV++       S+Y+    +  S  + S  P G F++SGS D ++ 
Sbjct: 267 ECKAEL----REHRHVVECISWAPESSYSSISEATGSETKKSGKP-GPFLLSGSRDKTIK 321
Query: 254 AWSVRSG 260
            W V +G
Sbjct: 322 MWDVSTG 328

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 103/266 (38%), Gaps = 58/266 (21%)
Query: 6   SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 64
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 65  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 115
              V          Y+    WD++LRL  +   +  + F GH   V S+ +       IS
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 116 GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD 175
           GS D+T+ +W  + +    LL         ++D        +   +R+    K +     
Sbjct: 125 GSRDKTIKVWTIKGQCLATLL--------GHND--------WVSQVRVVPNEKADDDSVT 168
Query: 176 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 235
           I S G D      VK  N  +  +     GH                    S  +TL A 
Sbjct: 169 IISAGND----KXVKAWNLNQFQIEADFIGH-------------------NSNINTLTA- 204
Query: 236 FSPEGMFVISGSGDGSVYAWSVRSGK 261
            SP+G  + S   DG +  W++ + K
Sbjct: 205 -SPDGTLIASAGKDGEIXLWNLAAKK 229

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 111/271 (40%), Gaps = 51/271 (18%)
Query: 10  YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 69
           ++  ++ + F      + +ASDD++++L++      L+T+      V  V F+    T+ 
Sbjct: 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIA 319
Query: 70  YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 129
            +S    D++++L +  + ++L+   GH   V  ++         S S D+TV LW++  
Sbjct: 320 SASD---DKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375
Query: 130 EKCQGLL----RVQG---RP-----AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF 177
           +  Q L      V+G    P     A+A DD+ +      G  ++             ++
Sbjct: 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS-----VW 430
Query: 178 SVGGDISDANVVKFSNDGRL-------MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 230
            V     D  +   S+D  +        LL T+ GH     S RG               
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVRG--------------- 472
Query: 231 TLEASFSPEGMFVISGSGDGSVYAWSVRSGK 261
               +FSP+G  + S S D +V  W+ R+G+
Sbjct: 473 ---VAFSPDGQTIASASDDKTVKLWN-RNGQ 499

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 112/253 (44%), Gaps = 24/253 (9%)
Query: 24  SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 83
           + +++ S D ++++++     C+ T+      V   C   H   V+  S+   D +LR+ 
Sbjct: 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHEKRVVSGSR---DATLRVW 224
Query: 84  SLHDNKYLRYFKGHHDRVVSLSLCSSKDC--FISGSLDRTVLLWDQRAEKCQGLLRVQGR 141
            +   + L    GH    V+   C   D    +SG+ D  V +WD   E C  L  +QG 
Sbjct: 225 DIETGQCLHVLMGH----VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC--LHTLQGH 278
Query: 142 PAAAYDDQ--GL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM 198
               Y  Q  G+ V + +    IR++D    E G   I ++ G  S  + ++  ++  ++
Sbjct: 279 TNRVYSLQFDGIHVVSGSLDTSIRVWDV---ETGNC-IHTLTGHQSLTSGMELKDN--IL 332
Query: 199 LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 258
           +    +  + + D   G  L T       +++     F+    FVI+ S DG+V  W ++
Sbjct: 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLK 390
Query: 259 SGKEVASWMSFDT 271
           +G+ + + ++ ++
Sbjct: 391 TGEFIRNLVTLES 403

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 47/190 (24%)
Query: 77  DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136
           D  +R+  + + K +   +GH   + SL    S D  +SGS DRTV +WD R  +C   L
Sbjct: 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203
Query: 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196
            ++        D     AV+ G                                   DG+
Sbjct: 204 SIE--------DGVTTVAVSPG-----------------------------------DGK 220
Query: 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS----RNSTLEASFSPEGMFVISGSGDGSV 252
            +   +++  + V DS  G L+   + +  S    ++S     F+ +G  V+SGS D SV
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 253 YAWSVRSGKE 262
             W++++   
Sbjct: 281 KLWNLQNANN 290

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 91/255 (35%), Gaps = 61/255 (23%)
Query: 22  SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP---TTVIYSS------ 72
           ++  +V+AS D+SI L+ +T        + K YGV     T H      V+ SS      
Sbjct: 394 NADIIVSASRDKSIILWKLTK-------DDKAYGVAQRRLTGHSHFVEDVVLSSDGQFAL 446
Query: 73  KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 132
              WD  LRL  L      R F GH   V+S++        +S S DRT+ LW+   E C
Sbjct: 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-C 505
Query: 133 QGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD--IFSVGGDISDANVVK 190
           +  +   G                  G+       ++        I S   D      VK
Sbjct: 506 KYTISEGGE-----------------GHRDWVSCVRFSPNTLQPTIVSASWD----KTVK 544
Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 250
             N     L +T+ GH   + +                      + SP+G    SG  DG
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTV---------------------AVSPDGSLCASGGKDG 583
Query: 251 SVYAWSVRSGKEVAS 265
            V  W +  GK++ S
Sbjct: 584 VVLLWDLAEGKKLYS 598

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 100/273 (36%), Gaps = 60/273 (21%)
Query: 1   MEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLV 59
           M +  + + +NG ++ +         +++AS D++I ++ +T        +   YG+   
Sbjct: 5   MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR-------DETNYGIPQR 57
Query: 60  CFTSHP---TTVIYSS------KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 110
               H    + V+ SS         WD +LRL  L      R F GH   V+S++  S  
Sbjct: 58  ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 117
Query: 111 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE 170
              +SGS D+T+ LW+     C+    VQ    + +     V  V F             
Sbjct: 118 RQIVSGSRDKTIKLWNTLGV-CK--YTVQDESHSEW-----VSCVRFS---------PNS 160
Query: 171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 230
             P  I S G D     +VK  N     L T   GH   L++                  
Sbjct: 161 SNPI-IVSCGWD----KLVKVWNLANCKLKTNHIGHTGYLNT------------------ 197
Query: 231 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV 263
               + SP+G    SG  DG    W +  GK +
Sbjct: 198 ---VTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 100/273 (36%), Gaps = 60/273 (21%)
Query: 1   MEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLV 59
           M +  + + +NG ++ +         +++AS D++I ++ +T        +   YG+   
Sbjct: 28  MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR-------DETNYGIPQR 80
Query: 60  CFTSHP---TTVIYSS------KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 110
               H    + V+ SS         WD +LRL  L      R F GH   V+S++  S  
Sbjct: 81  ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 140
Query: 111 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE 170
              +SGS D+T+ LW+     C+    VQ    + +     V  V F             
Sbjct: 141 RQIVSGSRDKTIKLWNTLG-VCK--YTVQDESHSEW-----VSCVRFS---------PNS 183
Query: 171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 230
             P  I S G D     +VK  N     L T   GH   L++                  
Sbjct: 184 SNPI-IVSCGWD----KLVKVWNLANCKLKTNHIGHTGYLNT------------------ 220
Query: 231 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV 263
               + SP+G    SG  DG    W +  GK +
Sbjct: 221 ---VTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
           +++  +F + + R+  +DFH +  +++T      + L++      +++I   +  V    
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           F +    +I  S    D  +R+ + +  + +  F+ H D + S+++  +K   +SGS D 
Sbjct: 63  FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 121 TVLLWD 126
           TV LW+
Sbjct: 120 TVKLWN 125

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 113/270 (41%), Gaps = 30/270 (11%)
Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
           +++  +F + + R+  +DFH +  +++T      + L++      +++I   +  V    
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           F +    +I  S    D  +R+ + +  + +  F+ H D + S+++  +K   +SGS D 
Sbjct: 63  FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 121 TVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD---- 175
           TV LW+   E    L +  +G        +  V  VAF       D   +  G  D    
Sbjct: 120 TVKLWNW--ENNWALEQTFEGH-------EHFVMCVAFNPK----DPSTFASGCLDRTVK 166
Query: 176 IFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE- 233
           ++S+G    +  +      G   +    +    +++ +     +  ++ +  S  +TLE 
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 234 -------ASFSPEGMFVISGSGDGSVYAWS 256
                  A F P    +ISGS DG++  W+
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 113/270 (41%), Gaps = 30/270 (11%)
Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
           +++  +F + + R+  +DFH +  +++T      + L++      +++I   +  V    
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           F +    +I  S    D  +R+ + +  + +  F+ H D + S+++  +K   +SGS D 
Sbjct: 63  FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 121 TVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD---- 175
           TV LW+   E    L +  +G        +  V  VAF       D   +  G  D    
Sbjct: 120 TVKLWNW--ENNWALEQTFEGH-------EHFVMCVAFNPK----DPSTFASGCLDRTVK 166
Query: 176 IFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE- 233
           ++S+G    +  +      G   +    +    +++ +     +  ++ +  S  +TLE 
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 234 -------ASFSPEGMFVISGSGDGSVYAWS 256
                  A F P    +ISGS DG++  W+
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 62/169 (36%), Gaps = 47/169 (27%)
Query: 92  RYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG 150
            +  GH   V+SLS+ S + + FISGS D TV LWD         LR+  R    Y    
Sbjct: 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD---------LRITSRAVRTYH--- 246
Query: 151 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 210
                                         G   D N VKF  DG+     + +G   + 
Sbjct: 247 ------------------------------GHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276
Query: 211 DSFRGTLLSTYNVKPVSRNSTL----EASFSPEGMFVISGSGDGSVYAW 255
           D   G  L  YN +P   ++ L      +FS  G  + +G  +G  Y W
Sbjct: 277 DMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 19/216 (8%)
Query: 88  NKYLRYFK---GHHDRVVSLSLCSSK----DCFISGSLDRTVLLWDQRAEKCQGLLRVQG 140
           N+Y   FK    H D + S++  ++K    +  ++GSLD  V +W  R E+      ++G
Sbjct: 19  NQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG 78
Query: 141 RPAAAYD-DQGLVFAVA----FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG 195
                   D      +A       +IR++D    ++    I S+     DA  + FS D 
Sbjct: 79  HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ----IKSIDAGPVDAWTLAFSPDS 134
Query: 196 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAW 255
           + +   T  G +++     G    + + +       L  ++SP+G ++ SG+ DG +  +
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRG---KFILSIAYSPDGKYLASGAIDGIINIF 191
Query: 256 SVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 291
            + +GK + +          + ++P S + VT S +
Sbjct: 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD 227

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/126 (20%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
           +++  +F + + R+  +DFH +  +++T      + +++      +++I   +  V    
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           F +    +I  S    D  +R+ + +  + +  F+ H D + S+++  +K   +SGS D 
Sbjct: 63  FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 121 TVLLWD 126
           TV LW+
Sbjct: 120 TVKLWN 125

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 10  YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 69
           +   ++ +DF     Y+V+AS D +I++++ +    ++T+N  K G+   C       V+
Sbjct: 255 HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVV 310
Query: 70  YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 126
             S    D ++RL  +     LR  +GH + V  +   + +   +SG+ D  + +WD
Sbjct: 311 SGSS---DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWD 362

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVD 57
            E   +   +   + S+ +  S + L T S D+S+ +++V       C+  +NS    V 
Sbjct: 95  FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 58  LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL--RYFKGHHDRVVSLSLCSSKDCFIS 115
            V +  HP+  + +S + +D++++L    ++ ++     +GH   V SL+   S     S
Sbjct: 155 HVVW--HPSQELLASAS-YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 211
Query: 116 GSLDRTVLLWDQ 127
            S DRTV +W Q
Sbjct: 212 CSDDRTVRIWRQ 223

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 29/190 (15%)
Query: 7   FRDYNGRISSMDF--HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 64
           F  +N  +  +D   +K+  Y+VT S D ++ ++ +   + +   + +++   LV  T  
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-HGEEHDYPLVFHTPE 257
Query: 65  PTTVIYSSKNGWDESLRLLSLHDN-------------------KYLRYFKGHHDRVVSLS 105
                     G   S+R +S H N                   K L    GH DR+ S  
Sbjct: 258 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 317
Query: 106 LCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA----YDDQGLVFAVAFGGYI 161
               +   IS S+D T+ +WD   E  + +  +QG  A        D+ LV A A  G I
Sbjct: 318 YDHERKRCISASMDTTIRIWD--LENGELMYTLQGHTALVGLLRLSDKFLVSAAA-DGSI 374
Query: 162 RMFDARKYEK 171
           R +DA  Y +
Sbjct: 375 RGWDANDYSR 384

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.88
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.79
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.78
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.77
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.77
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.76
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.74
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.73
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.71
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.69
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.69
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.68
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.68
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.67
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.66
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.63
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.63
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.63
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.6
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.57
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.57
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.56
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.55
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.54
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.54
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.51
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.51
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.51
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.48
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.48
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.47
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.47
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.44
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.41
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.38
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.36
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.36
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.35
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.29
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.29
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.24
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.23
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.22
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.19
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.19
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.17
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.16
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.16
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.15
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.15
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.14
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.12
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.11
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.1
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.07
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.06
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.03
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.02
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.02
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.96
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.95
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.94
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.92
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.92
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.89
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.89
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.86
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.85
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.84
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.79
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.78
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.77
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.74
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.71
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.69
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.65
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.63
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.63
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.62
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.62
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.57
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.56
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.37
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.37
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.35
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.32
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.27
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.26
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.11
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.07
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.05
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.0
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.99
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.99
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.97
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.85
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.83
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.81
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.81
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.73
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.72
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.68
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.66
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.65
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.55
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.49
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.44
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.42
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.41
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.33
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.27
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.23
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.22
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.1
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.1
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.95
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.94
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.93
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.87
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.62
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.56
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.53
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.49
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.38
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.33
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.28
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.18
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.12
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.07
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.01
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.81
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.71
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.7
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.68
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.38
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.18
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.1
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.95
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.86
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.76
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.69
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.47
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.44
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.38
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.78
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.6
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.49
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.3
3ott_A	758	Two-component system sensor histidine kinase; beta	91.53
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.08
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	90.88
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	90.45
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.08
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.65
3ott_A	758	Two-component system sensor histidine kinase; beta	89.6
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.58
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.92
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	88.91
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	87.42
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	86.06
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	85.29
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	84.2
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	82.78
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.29
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	81.56
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	81.08
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	80.88
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	80.65

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-48  Score=349.04  Aligned_cols=286  Identities=17%  Similarity=0.284  Sum_probs=251.9

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      ...+.+|.++|++++|+|++++|+||+.|++|+|||+.++++++++.+|...|..++|+++++.+++++.   |++|++|
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~---D~~i~iw  177 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA---DMTIKLW  177 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET---TSCCCEE
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeC---CCeEEEE
Confidence            4578899999999999999999999999999999999999999999999999999999999998888764   8899999


Q ss_pred             EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEE-EEECCE
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFA-VAFGGY  160 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~  160 (309)
                      |+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++.+...+..+.  .....+.+++.+++ ++.|+.
T Consensus       178 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~  257 (410)
T 1vyh_C          178 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  257 (410)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence            999999999999999999999999999999999999999999999998877665433  23456667766555 456899


Q ss_pred             EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC--------------------CCEEEEEeCCCcEEEEECCCCeEeEE
Q 021648          161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSND--------------------GRLMLLTTMEGHIHVLDSFRGTLLST  220 (309)
Q Consensus       161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d--------------------g~~l~~~~~dg~v~i~d~~~~~~~~~  220 (309)
                      |++||++..+    ....+.++...+.+++|+|+                    |.++++++.|++|++||+.++..+..
T Consensus       258 v~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~  333 (410)
T 1vyh_C          258 VRVWVVATKE----CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT  333 (410)
T ss_dssp             EEEEETTTCC----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEECCCCc----eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            9999987643    23455667788999999996                    67899999999999999999998887


Q ss_pred             eeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          221 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       221 ~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      +.   .|...+.+++|+|+|++|++|+.|++|++||+.+++.+.++.+|...|++++|+|++++|++|+.|..+.+|++
T Consensus       334 ~~---~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          334 LV---GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EE---CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EE---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            75   35677889999999999999999999999999999999999999999999999999999999999966555553

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.5e-47  Score=330.74  Aligned_cols=288  Identities=17%  Similarity=0.250  Sum_probs=244.7

Q ss_pred             CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      +++.++|++|+++|.+++|+|++++|+||+.|++|+|||+.++++++.+..|..++..++|+++++.+++++.   |++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~---d~~i   79 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD---DFRI   79 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET---TSEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECC---CCEE
Confidence            3567899999999999999999999999999999999999999999999999999999999999999998875   8899


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee-eeeeeecC--ceeEEECC-CCc-EEEE
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQG--RPAAAYDD-QGL-VFAV  155 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~-~~~~~~~~--~~~~~~~~-~~~-~~~~  155 (309)
                      ++||+++++.+..+.+|.+.|++++|+|++++|+||+.|++|++||++++.. ...+..+.  ...+.+.| ++. ++++
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg  159 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence            9999999999999999999999999999999999999999999999987633 33333222  23456766 444 5556


Q ss_pred             EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc--CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648          156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  233 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~  233 (309)
                      +.|+.|++||++.... .  .....++...+..+.++|  ++.++++++.|++|++||+.+++++.++..   |...+..
T Consensus       160 s~D~~v~iwd~~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~---h~~~v~~  233 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTP-N--FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---HMSNVSF  233 (304)
T ss_dssp             ETTSEEEEEETTCSSC-S--EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC---CSSCEEE
T ss_pred             eCCCeEEEEECCCCCc-c--ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC---CCCCEEE
Confidence            6799999999876432 1  122234446788888876  788999999999999999999998887763   5677889


Q ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCee--EEEEccce-EEEeee
Q 021648          234 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTGSSE-LSFWIP  297 (309)
Q Consensus       234 ~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~s~~~d-~~~~~~  297 (309)
                      ++|+|++++|++|+.||+|++||+.+++.+.++..|...+.+++|+|++.  ++++|+.+ ..+|..
T Consensus       234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~  300 (304)
T 2ynn_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (304)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEEC
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEe
Confidence            99999999999999999999999999999999999999999999999874  58888776 444543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.3e-47  Score=332.32  Aligned_cols=287  Identities=17%  Similarity=0.206  Sum_probs=246.4

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +..++|++|.++|.+++|+|++++|+||+.|++|+|||+.+++++..+..|...+..++|+|+++.+++++.   |+.++
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~v~  122 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL---DNICS  122 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEET---TCEEE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeC---CCeEE
Confidence            345789999999999999999999999999999999999999999999999999999999999999988764   88999


Q ss_pred             EEEccCCc----eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEE-
Q 021648           82 LLSLHDNK----YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFA-  154 (309)
Q Consensus        82 ~~d~~~~~----~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-  154 (309)
                      +||+.+++    ....+.+|.+.|.++.|++++ .+++++.|++|++||++++++...+..+.  ...+.+.+++.+++ 
T Consensus       123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  201 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence            99997753    466788999999999999876 48999999999999999988776664332  34566777776555 


Q ss_pred             EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          155 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       155 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                      ++.|+.|++||++...    ....+.++...+.+++|+|+++++++++.||+|++||++++..+..+.. ..+...+.++
T Consensus       202 g~~d~~v~~wd~~~~~----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~~~~v~~~  276 (340)
T 1got_B          202 GACDASAKLWDVREGM----CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIICGITSV  276 (340)
T ss_dssp             EETTSCEEEEETTTCS----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEE
T ss_pred             EeCCCcEEEEECCCCe----eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc-CCcccceEEE
Confidence            4568999999997643    2445667788899999999999999999999999999999887766542 2233467889


Q ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648          235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP  297 (309)
Q Consensus       235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~  297 (309)
                      +|+|+|++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|..+.+|
T Consensus       277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence            999999999999999999999999999999999999999999999999999999998444433

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.8e-47  Score=330.80  Aligned_cols=285  Identities=20%  Similarity=0.267  Sum_probs=245.6

Q ss_pred             ceEecCCCcceEEEEeCCC----CCEEEEeeCCCcEEEEEcCCCce--eeeeeccccceeEEEEecCCCEEEEEcCCCCC
Q 021648            4 GMSFRDYNGRISSMDFHKS----SSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD   77 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~----~~~l~t~s~D~~v~iWd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d   77 (309)
                      .+++++|+++|.+++|+|+    +.+|+|||.|++|||||+.+++.  ...+.+|...|..+++++++..+++++.   |
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~---D  101 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL---D  101 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET---T
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC---C
Confidence            4667899999999999975    57999999999999999976654  4568899999999999999998888764   8


Q ss_pred             ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEE
Q 021648           78 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAV  155 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  155 (309)
                      ++|++||+.+++.+..+..|...+.+++|+|++++|++++.|+.+++||+++++....+....  .....+.+++.++++
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las  181 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS  181 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999887765554433  235677888776665


Q ss_pred             E-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          156 A-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       156 ~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                      + .|+.|++||++..+    .+..+.++...+.+++|+|++++|++++.|+.|++||+.+++....+.   .|...+.++
T Consensus       182 g~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~  254 (321)
T 3ow8_A          182 GAIDGIINIFDIATGK----LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS---GHASWVLNV  254 (321)
T ss_dssp             EETTSCEEEEETTTTE----EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC---CCSSCEEEE
T ss_pred             EcCCCeEEEEECCCCc----EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc---CCCCceEEE
Confidence            5 58999999987642    245567777889999999999999999999999999999988877665   356778999


Q ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeec
Q 021648          235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD  298 (309)
Q Consensus       235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~  298 (309)
                      +|+|++++|++++.|++|++||+.+++++.++.+|...|.+++|+|++++|++++.|..+.+|+
T Consensus       255 ~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          255 AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999985544444

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.2e-46  Score=331.90  Aligned_cols=288  Identities=15%  Similarity=0.213  Sum_probs=245.6

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +..++|++|.++|.+++|+|++++|||||.|++|+|||..++++.+.+..+...+..++|+|++..+++++.   |+.++
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~---d~~i~  131 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL---DNKCS  131 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEEST---TSEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeC---CCCEE
Confidence            456789999999999999999999999999999999999999999999988889999999999999988754   89999


Q ss_pred             EEEccCC------ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc--eeEEECC--CC-
Q 021648           82 LLSLHDN------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDD--QG-  150 (309)
Q Consensus        82 ~~d~~~~------~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~--~~~~~~~--~~-  150 (309)
                      +|++...      .....+.+|.+.|.++.|+|+++.|++++.|++|++||++++++...+..+..  ....+.+  ++ 
T Consensus       132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred             EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence            9998643      34567889999999999999999999999999999999999988776654332  2334443  33 


Q ss_pred             cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCc
Q 021648          151 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  230 (309)
Q Consensus       151 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  230 (309)
                      .+++++.|+.|++||++..+    .+..+.++...+.+++|+|++.++++++.|++|++||++++..+..+... .....
T Consensus       212 ~l~sgs~Dg~v~~wd~~~~~----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~-~~~~~  286 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDMRSGQ----CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE-SIIFG  286 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-TCCSC
T ss_pred             EEEEEeCCCeEEEEECCCCc----EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-Ccccc
Confidence            45666679999999998643    24456677889999999999999999999999999999988777655422 12345


Q ss_pred             cceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648          231 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP  297 (309)
Q Consensus       231 ~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~  297 (309)
                      +..++|+|+|++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|..+.+|
T Consensus       287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             eeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence            6789999999999999999999999999999999999999999999999999999999998555444

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.3e-47  Score=339.60  Aligned_cols=292  Identities=20%  Similarity=0.308  Sum_probs=242.6

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ..++|++|+++|++++|+|++++|+|||.|++|+|||+.+++++..+..|...|..++|+|+++.+++++   .|+.+++
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~---~d~~v~i  134 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGG---LDSACSI  134 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECC---SSSCCEE
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEee---CCCcEEE
Confidence            4578999999999999999999999999999999999999999999999999999999999999988765   4899999


Q ss_pred             EEccCCc-------eEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeee-----cC--ceeEEEC
Q 021648           83 LSLHDNK-------YLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRV-----QG--RPAAAYD  147 (309)
Q Consensus        83 ~d~~~~~-------~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~-----~~--~~~~~~~  147 (309)
                      ||+.+..       ....+.+|.+.|.++.|+|+ +..|+||+.|++|++||++++++...+..     +.  .....+.
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            9986532       34568899999999999997 45799999999999999999887665421     11  1233443


Q ss_pred             C-CC-cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecC
Q 021648          148 D-QG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP  225 (309)
Q Consensus       148 ~-~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  225 (309)
                      + ++ .+++++.|+.|++||++....   .+..+.+|...+.+++|+|+|++|++++.||+|++||+.++..+..+..+.
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~---~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~  291 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSR---AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP  291 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCC---CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCc---ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc
Confidence            3 34 455666799999999974322   234566788899999999999999999999999999999999887765432


Q ss_pred             C----CCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe----ecCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648          226 V----SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW----MSFDTEPPVIKWTPGSLMFVTGSSELSFWIP  297 (309)
Q Consensus       226 ~----~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~----~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~  297 (309)
                      .    +...+..++|+|+|++|++|+.||.|++||+.+++.+..+    .+|...|.+++|+|++++|++|+.|..+.+|
T Consensus       292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW  371 (380)
T 3iz6_a          292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW  371 (380)
T ss_dssp             SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence            1    1224778999999999999999999999999998888776    6799999999999999999999998555444


Q ss_pred             cCC
Q 021648          298 DLS  300 (309)
Q Consensus       298 ~~~  300 (309)
                      +++
T Consensus       372 ~~~  374 (380)
T 3iz6_a          372 AFS  374 (380)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-44  Score=313.26  Aligned_cols=289  Identities=22%  Similarity=0.443  Sum_probs=243.2

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      +..++.+|.++|++++|+|++++|++|+.|++|++||+.+++....+.+|...|..++|+|+++.+++++.   |+.|++
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~v   91 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI   91 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEE
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC---CCEEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999988864   889999


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEE-EEECC
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFA-VAFGG  159 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~  159 (309)
                      ||+.+++.+..+.+|...|.++.|+|++++|++++.|++|++||++++++...+..+.  .....+.+++.+++ ++.|+
T Consensus        92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
T 4ery_A           92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  171 (312)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            9999999999999999999999999999999999999999999999888776665433  23456777765554 55689


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE-CC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF-SP  238 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-sp  238 (309)
                      .|++||++..+.   .......+...+..++|+|+++++++++.|+.|++||+.+++.+..+..+...... ....| .+
T Consensus       172 ~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~  247 (312)
T 4ery_A          172 LCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-IFANFSVT  247 (312)
T ss_dssp             CEEEEETTTCCE---EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSC-CCEEEECS
T ss_pred             cEEEEECCCCce---eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEE-EEEEEEeC
Confidence            999999876431   11112234457888999999999999999999999999999988877643322222 23344 46


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEcc--ce--EEEeeec
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SE--LSFWIPD  298 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~--~d--~~~~~~~  298 (309)
                      ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++++++++  .|  +++|..+
T Consensus       248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            789999999999999999999999999999999999999999999999886  45  6667543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.8e-45  Score=318.63  Aligned_cols=283  Identities=17%  Similarity=0.296  Sum_probs=233.8

Q ss_pred             ccceEecCCCcceEEEEeCCCC-CEEEEeeCCCcEEEEEcCC-----CceeeeeeccccceeEEEEecCCCEEEEEcCCC
Q 021648            2 EVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTA-----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   75 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g   75 (309)
                      .+..+|++|+++|.+++|+|++ ++|+|||.|++|++||+.+     +.+++.+.+|...|..++|++++..+++++.  
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~--   85 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW--   85 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC--
Confidence            4567899999999999999965 8999999999999999864     3457788999999999999999999998864  


Q ss_pred             CCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCC----
Q 021648           76 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQ----  149 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~----  149 (309)
                       |++|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||++... ...+..+.  .....+.+.    
T Consensus        86 -D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~-~~~~~~h~~~v~~~~~~~~~~~~  163 (319)
T 3frx_A           86 -DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKAD  163 (319)
T ss_dssp             -TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE-EEEECCCSSCEEEEEECCC----
T ss_pred             -CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEeccCCcEEEEEEccCCCCC
Confidence             8999999999999999999999999999999999999999999999999987543 33332221  122333332    


Q ss_pred             --C-cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC
Q 021648          150 --G-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  226 (309)
Q Consensus       150 --~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  226 (309)
                        + .+++++.|+.|++||++..+    ....+.+|...+.+++|+|+|++|++++.||+|++||+.+++.+..+..   
T Consensus       164 ~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~---  236 (319)
T 3frx_A          164 DDSVTIISAGNDKMVKAWNLNQFQ----IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA---  236 (319)
T ss_dssp             --CCEEEEEETTSCEEEEETTTTE----EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---
T ss_pred             CCccEEEEEeCCCEEEEEECCcch----hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---
Confidence              2 46666779999999987643    2345667888999999999999999999999999999999998877653   


Q ss_pred             CCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee--------cCCCCCcEEEECCCeeEEEEccce--EEEee
Q 021648          227 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--------SFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  296 (309)
Q Consensus       227 ~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~--------~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~  296 (309)
                       ...+..++|+|++.++++++.++ +++|++.....+..+.        .|...+.+++|+|++++|++|+.|  +++|.
T Consensus       237 -~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          237 -QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             -CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             -CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence             35688999999999999987655 9999998876666553        345667899999999999999998  55554


Q ss_pred             e
Q 021648          297 P  297 (309)
Q Consensus       297 ~  297 (309)
                      .
T Consensus       315 ~  315 (319)
T 3frx_A          315 V  315 (319)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.3e-45  Score=324.15  Aligned_cols=283  Identities=17%  Similarity=0.167  Sum_probs=218.5

Q ss_pred             ecCCCcceEEEEeCCCCCEEEEeeC------CCcEEEEEcCCCceeee----eeccccceeEEEEecCCCEEEEEcCCCC
Q 021648            7 FRDYNGRISSMDFHKSSSYLVTASD------DESIRLYDVTAATCLKT----INSKKYGVDLVCFTSHPTTVIYSSKNGW   76 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~~~~l~t~s~------D~~v~iWd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~s~~g~   76 (309)
                      ...|++.|++++|+|||++|||||.      |+++++|+..++.....    ...|...|..++|+|++.. ++++.   
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~---  113 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASD---  113 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEET---
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEEC---
Confidence            3579999999999999999999996      78899999887765433    3467778999999998754 44443   


Q ss_pred             CceeEEEEccCCceEE----EeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCC
Q 021648           77 DESLRLLSLHDNKYLR----YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG  150 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~----~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~  150 (309)
                      |++|++||+.+++.+.    ...+|.+.|++++|+|++++|++++.|++|++||++++++...+..+.  ...+.+.+++
T Consensus       114 dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~  193 (357)
T 4g56_B          114 SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGK  193 (357)
T ss_dssp             TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTC
T ss_pred             CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCC
Confidence            7899999998876543    345899999999999999999999999999999999998877765433  2345565543


Q ss_pred             --cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCeEeEEeeecCCC
Q 021648          151 --LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  227 (309)
Q Consensus       151 --~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  227 (309)
                        .+++++.|+.|++||++..+.  ........+...+.+++|+|+ +.++++++.|+.|++||+.+++.+..+.   .+
T Consensus       194 ~~~~~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~---~~  268 (357)
T 4g56_B          194 DTIFLSCGEDGRILLWDTRKPKP--ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA---VH  268 (357)
T ss_dssp             SSCEEEEETTSCEEECCTTSSSC--BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC---CC
T ss_pred             CceeeeeccCCceEEEECCCCce--eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe---cc
Confidence              466677799999999986542  122233344556889999997 5688999999999999999988887765   35


Q ss_pred             CCccceEEECCCC-CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECC-CeeEEEEccceEEEeeecC
Q 021648          228 RNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       228 ~~~~~~~~~sp~g-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~s~~~d~~~~~~~~  299 (309)
                      ...+.+++|+|++ ++||+|+.|++|+|||+.+++.+..+ +|...|++|+|+| ++++|++++.|.++.+|++
T Consensus       269 ~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~  341 (357)
T 4g56_B          269 SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL  341 (357)
T ss_dssp             SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence            5778899999997 68999999999999999998877654 7999999999999 7899999999844444443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.8e-44  Score=313.27  Aligned_cols=284  Identities=14%  Similarity=0.218  Sum_probs=226.2

Q ss_pred             ccceEecCCCcceEEEEe-----CC-CCCEEEEeeCCCcEEEEEcCCC-------ceeeeeeccccceeEEEEecCCCEE
Q 021648            2 EVGMSFRDYNGRISSMDF-----HK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPTTV   68 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~-----s~-~~~~l~t~s~D~~v~iWd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~   68 (309)
                      ++..+|++|++.|++++|     ++ ++++|+|||.|++|+|||+.++       .+...+.+|...|..++|+|++..+
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            356789999999999999     76 8999999999999999999743       4567788999999999999999998


Q ss_pred             EEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee--c--CceeE
Q 021648           69 IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--Q--GRPAA  144 (309)
Q Consensus        69 ~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~--~--~~~~~  144 (309)
                      ++++.   |++|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||++..........  +  .....
T Consensus        92 ~s~s~---D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~  168 (343)
T 2xzm_R           92 ISSSW---DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV  168 (343)
T ss_dssp             EEEET---TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEE
T ss_pred             EEEcC---CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeee
Confidence            88764   89999999999999999999999999999999999999999999999999874432222111  1  12334


Q ss_pred             EECCCC-----------cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC
Q 021648          145 AYDDQG-----------LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  213 (309)
Q Consensus       145 ~~~~~~-----------~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~  213 (309)
                      .+.+.+           .+++++.|+.|++||...     .....+.++...+.+++|+|+|++|++++.||+|++||+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             EECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred             eeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            555543           456666799999999432     1234556677889999999999999999999999999984


Q ss_pred             C-CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEE--Eee-----------cCCCCCcEEEEC
Q 021648          214 R-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA--SWM-----------SFDTEPPVIKWT  279 (309)
Q Consensus       214 ~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~--~~~-----------~~~~~v~~l~~~  279 (309)
                      . ......+.    +...+.+++|+|++++++++ .|+.|++||+.+++...  .+.           +|...+.+++|+
T Consensus       244 ~~~~~~~~~~----~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  318 (343)
T 2xzm_R          244 NLTYPQREFD----AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN  318 (343)
T ss_dssp             CCSSCSEEEE----CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred             CCcccceeec----CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence            3 33333332    23458899999999887655 68889999998776543  333           677889999999


Q ss_pred             CCeeEEEEccceEEEeeec
Q 021648          280 PGSLMFVTGSSELSFWIPD  298 (309)
Q Consensus       280 p~~~~l~s~~~d~~~~~~~  298 (309)
                      |++++|++|+.|..+.+|+
T Consensus       319 p~g~~l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          319 ALGKKLFAGFTDGVIRTFS  337 (343)
T ss_dssp             SSSCCEEEEETTSEEEEEE
T ss_pred             CCCCeEEEecCCceEEEEE
Confidence            9999999999984444443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.5e-44  Score=315.02  Aligned_cols=289  Identities=11%  Similarity=0.234  Sum_probs=230.6

Q ss_pred             ccceEecCCCc-ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee--ee-eeccccceeEEEEecCCCEEEEEcCCCCC
Q 021648            2 EVGMSFRDYNG-RISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KT-INSKKYGVDLVCFTSHPTTVIYSSKNGWD   77 (309)
Q Consensus         2 ~~~~~~~~h~~-~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~--~~-~~~~~~~v~~~~~~~~~~~~~~~s~~g~d   77 (309)
                      +++.+|.+|.+ .|.+++|+|+|++||||+.|++|+|||+.+++.+  .. ..+|...|..++|+|+++.+++++.   |
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~---D   82 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF---D   82 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET---T
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC---C
Confidence            57788999998 9999999999999999999999999999877643  22 3678889999999999999998864   8


Q ss_pred             ceeEEEEccCCc--eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee---eeeeeec--CceeEEECCCC
Q 021648           78 ESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC---QGLLRVQ--GRPAAAYDDQG  150 (309)
Q Consensus        78 ~~i~~~d~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~---~~~~~~~--~~~~~~~~~~~  150 (309)
                      +++++||+..++  .+..+.+|.+.|.+++|+|++++|++++.|++|++||++++..   ...+..+  ....+.+.+++
T Consensus        83 ~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  162 (345)
T 3fm0_A           83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ  162 (345)
T ss_dssp             SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred             CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence            899999998764  5788999999999999999999999999999999999876543   2222222  12345677776


Q ss_pred             cEE-EEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe-------------
Q 021648          151 LVF-AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-------------  216 (309)
Q Consensus       151 ~~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~-------------  216 (309)
                      .++ +++.|+.|++||.+..+  ......+.++...+.+++|+|+|++|++++.|++|++||.....             
T Consensus       163 ~~l~s~s~d~~i~~w~~~~~~--~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~  240 (345)
T 3fm0_A          163 ELLASASYDDTVKLYREEEDD--WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS  240 (345)
T ss_dssp             SCEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CE
T ss_pred             CEEEEEeCCCcEEEEEecCCC--EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCc
Confidence            544 45568999999986432  12345677888899999999999999999999999999963221             


Q ss_pred             --EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCce---------EEEeecCCCCCcEEEECCCe-eE
Q 021648          217 --LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE---------VASWMSFDTEPPVIKWTPGS-LM  284 (309)
Q Consensus       217 --~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~---------~~~~~~~~~~v~~l~~~p~~-~~  284 (309)
                        .+..+  ...|...+..++|+|++..|++++.|+.|++|+......         .....+|...|++|+|+|++ .+
T Consensus       241 ~~~~~~~--~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~  318 (345)
T 3fm0_A          241 WKCICTL--SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL  318 (345)
T ss_dssp             EEEEEEE--CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTE
T ss_pred             cceeEEe--cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceE
Confidence              11122  223567789999999999999999999999999875421         11235789999999999998 59


Q ss_pred             EEEccce--EEEeee
Q 021648          285 FVTGSSE--LSFWIP  297 (309)
Q Consensus       285 l~s~~~d--~~~~~~  297 (309)
                      |++++.|  +++|..
T Consensus       319 laS~s~Dg~v~~W~~  333 (345)
T 3fm0_A          319 LASCSDDGEVAFWKY  333 (345)
T ss_dssp             EEEEETTSCEEEEEE
T ss_pred             EEEcCCCCcEEEEEe
Confidence            9999998  666644

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8.2e-44  Score=318.07  Aligned_cols=284  Identities=20%  Similarity=0.337  Sum_probs=229.7

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecccc------------------ceeEEEEecCCCEEEE
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY------------------GVDLVCFTSHPTTVIY   70 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~~~~   70 (309)
                      +|.+.|.+++|+|||++||+|+ |++++||++.+++.+..+..+..                  .|..++|+|+++.+++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999986 78999999999998887765432                  3789999999999998


Q ss_pred             EcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC-ceeEEECC-
Q 021648           71 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDD-  148 (309)
Q Consensus        71 ~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~~~-  148 (309)
                      ++.   |++|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+.... .....+.+ 
T Consensus       141 ~~~---d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~  217 (393)
T 1erj_A          141 GAE---DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG  217 (393)
T ss_dssp             EET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred             EcC---CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC
Confidence            864   8899999999999999999999999999999999999999999999999999988776655433 23455555 


Q ss_pred             CCcEE-EEEECCEEEEEECCCCCcCC-c--eEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeE-------
Q 021648          149 QGLVF-AVAFGGYIRMFDARKYEKGP-F--DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-------  217 (309)
Q Consensus       149 ~~~~~-~~~~~~~i~~~d~~~~~~~~-~--~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~-------  217 (309)
                      ++.++ +++.|+.|++||++...... +  ......++...+.+++|+|+|+++++++.|++|++||+.+...       
T Consensus       218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  297 (393)
T 1erj_A          218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  297 (393)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence            55544 45568999999987543100 0  0011145677899999999999999999999999999876432       


Q ss_pred             -----eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECC------CeeEEE
Q 021648          218 -----LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP------GSLMFV  286 (309)
Q Consensus       218 -----~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p------~~~~l~  286 (309)
                           ...+.   .|...+.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|      ++++|+
T Consensus       298 ~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~  374 (393)
T 1erj_A          298 NSGTCEVTYI---GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA  374 (393)
T ss_dssp             ---CEEEEEE---CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred             CCCcceEEEe---cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEE
Confidence                 22222   3556788999999999999999999999999999999999999999999999876      689999


Q ss_pred             EccceEEEeeecC
Q 021648          287 TGSSELSFWIPDL  299 (309)
Q Consensus       287 s~~~d~~~~~~~~  299 (309)
                      +|+.|..+.+|++
T Consensus       375 sgs~Dg~i~iW~~  387 (393)
T 1erj_A          375 TGSGDCKARIWKY  387 (393)
T ss_dssp             EEETTSEEEEEEE
T ss_pred             EECCCCcEEECcc
Confidence            9999855555444

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.5e-44  Score=315.91  Aligned_cols=281  Identities=15%  Similarity=0.164  Sum_probs=216.8

Q ss_pred             cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC-----------CceeeeeeccccceeEEEEecCCCEEEEEcCCCC
Q 021648            8 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-----------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   76 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   76 (309)
                      ..|...|.+++|+|||++|++++ |+++|+||...           .........+..+|..++|++++ .+++++.   
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~---  101 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASD---  101 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEET---
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEEC---
Confidence            45788899999999999999887 78889987421           01111122345679999999985 5666654   


Q ss_pred             CceeEEEEccCCceEEE----eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCC
Q 021648           77 DESLRLLSLHDNKYLRY----FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG  150 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~----~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~  150 (309)
                      |++|++||+++++.+..    +.+|.+.|++++|+|++++|+||+.|++|++||++++++...+..+.  .....+.+++
T Consensus       102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~  181 (344)
T 4gqb_B          102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK  181 (344)
T ss_dssp             TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred             CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence            88999999998875543    45899999999999999999999999999999999998877765433  2345666554


Q ss_pred             -c-EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCeEeEEeeecCCC
Q 021648          151 -L-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  227 (309)
Q Consensus       151 -~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  227 (309)
                       . +++++.|+.|++||++..+.  ...+....+...+.+++|+|+ ++++++++.||+|++||+++++++.++.   .|
T Consensus       182 ~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~---~h  256 (344)
T 4gqb_B          182 DSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA---VH  256 (344)
T ss_dssp             TTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE---CC
T ss_pred             CCceeeeccccccccccccccce--eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc---CC
Confidence             3 45566789999999986542  222222233346789999985 5788999999999999999999888776   35


Q ss_pred             CCccceEEECCCC-CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCee-EEEEccce--EEEeeecC
Q 021648          228 RNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGSSE--LSFWIPDL  299 (309)
Q Consensus       228 ~~~~~~~~~sp~g-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~~~d--~~~~~~~~  299 (309)
                      ...|.+++|+|+| ++|++||.|++|+|||+.+++.+ .+.+|...|.+|+|+|+++ +|++++.|  +++|....
T Consensus       257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            6788999999998 68999999999999999988654 5679999999999999985 67889888  66675543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.4e-44  Score=336.64  Aligned_cols=292  Identities=16%  Similarity=0.259  Sum_probs=234.5

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee-------ccccceeEEEEecCCCEEEEEcCC
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-------SKKYGVDLVCFTSHPTTVIYSSKN   74 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~s~~   74 (309)
                      ++.++|.+|.+.|.+++|+|+|++||||+.|++|+|||+.+++++..+.       +|...|..++|+|+++.+++++. 
T Consensus       181 ~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~-  259 (611)
T 1nr0_A          181 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-  259 (611)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET-
T ss_pred             eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC-
Confidence            3467889999999999999999999999999999999999999988884       78889999999999999998864 


Q ss_pred             CCCceeEEEEccCCceEE-------------------------------------------EeeecccCEEEEEecCCCC
Q 021648           75 GWDESLRLLSLHDNKYLR-------------------------------------------YFKGHHDRVVSLSLCSSKD  111 (309)
Q Consensus        75 g~d~~i~~~d~~~~~~~~-------------------------------------------~~~~h~~~v~~v~~~~~~~  111 (309)
                        |++|++||+.+++.+.                                           .+.+|.+.|++++|+|+++
T Consensus       260 --D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~  337 (611)
T 1nr0_A          260 --DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK  337 (611)
T ss_dssp             --TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             --CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC
Confidence              8899999998766443                                           3458999999999999999


Q ss_pred             eEEEecCCCcEEEeeCCCceeeeeeee-c--CceeEEECCCCcEEEEEECCEEEEEECCCCCcCC-----------ceEE
Q 021648          112 CFISGSLDRTVLLWDQRAEKCQGLLRV-Q--GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGP-----------FDIF  177 (309)
Q Consensus       112 ~l~s~s~Dg~v~~Wd~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-----------~~~~  177 (309)
                      +|+|++.|++|++||++++++...+.. +  ......+.+++.+++++.|+.+++|++.......           ....
T Consensus       338 ~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~  417 (611)
T 1nr0_A          338 TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL  417 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEE
T ss_pred             EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEE
Confidence            999999999999999998876554311 1  2234566677888888889999999975422100           0000


Q ss_pred             EeC-------------------------CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccc
Q 021648          178 SVG-------------------------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  232 (309)
Q Consensus       178 ~~~-------------------------~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  232 (309)
                      ...                         .+...+.+++|||||+++++++.|++|++||+..+.......  ..|...+.
T Consensus       418 ~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~--~~h~~~v~  495 (611)
T 1nr0_A          418 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT--IVHPAEIT  495 (611)
T ss_dssp             EECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE--EECSSCEE
T ss_pred             EEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec--cCCCCceE
Confidence            000                         122457889999999999999999999999997765432211  23567899


Q ss_pred             eEEECCCCCEEEEEcCCCcEEEEECCC-CceEEE--eecCCCCCcEEEECCCeeEEEEccce--EEEeeec
Q 021648          233 EASFSPEGMFVISGSGDGSVYAWSVRS-GKEVAS--WMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  298 (309)
Q Consensus       233 ~~~~sp~g~~l~s~s~Dg~i~vwd~~~-~~~~~~--~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~  298 (309)
                      +++|+|||++|++++.|++|++||+.+ ++.+..  +..|...|.+++|+||+++|++|+.|  +++|..+
T Consensus       496 ~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~  566 (611)
T 1nr0_A          496 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN  566 (611)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence            999999999999999999999999987 555443  34499999999999999999999998  5555543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-42  Score=302.13  Aligned_cols=289  Identities=17%  Similarity=0.288  Sum_probs=219.9

Q ss_pred             CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC--ceeeee-ec-cccceeEEEEecCCCEEEEEcCCCC
Q 021648            1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLKTI-NS-KKYGVDLVCFTSHPTTVIYSSKNGW   76 (309)
Q Consensus         1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~s~~g~   76 (309)
                      ++++++|++|.++|.+++|+|+  +||||+.|++|+|||+.++  +.+..+ .. |...|..++|+|+++.+++++.   
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~---   78 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF---   78 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET---
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC---
Confidence            3578899999999999999997  9999999999999999875  445555 34 8888999999999999888764   


Q ss_pred             CceeEEEEccC-------CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc----eeeeeeeecC--cee
Q 021648           77 DESLRLLSLHD-------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE----KCQGLLRVQG--RPA  143 (309)
Q Consensus        77 d~~i~~~d~~~-------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~----~~~~~~~~~~--~~~  143 (309)
                      |++|++||++.       .+.+..+.+|.+.|.+++|+|++++|+||+.|++|++||++..    ++...+..+.  ...
T Consensus        79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~  158 (330)
T 2hes_X           79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH  158 (330)
T ss_dssp             TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred             CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence            88999999853       3467788999999999999999999999999999999998532    2333333222  334


Q ss_pred             EEECCCCcEEE-EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC--CCEEEEEeCCCcEEEEECCCC-----
Q 021648          144 AAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSFRG-----  215 (309)
Q Consensus       144 ~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d--g~~l~~~~~dg~v~i~d~~~~-----  215 (309)
                      +.+.+++.+++ ++.|+.|++||.+....  ..+..+.+|...+.+++|+|+  +..+++++.|++|++||+..+     
T Consensus       159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~  236 (330)
T 2hes_X          159 VIWHPSEALLASSSYDDTVRIWKDYDDDW--ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ  236 (330)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCCe--eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence            66777776555 45689999999764211  124566788889999999999  779999999999999998653     


Q ss_pred             ---eEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc--eEEE-eecCCC-CCcEEEECC--CeeEEE
Q 021648          216 ---TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK--EVAS-WMSFDT-EPPVIKWTP--GSLMFV  286 (309)
Q Consensus       216 ---~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~--~~~~-~~~~~~-~v~~l~~~p--~~~~l~  286 (309)
                         .....+  ...|...+.+++|+|++ +|++++.||+|++||..+++  .+.. +..|.. .+.+++|+|  ++++|+
T Consensus       237 ~~~~~~~~~--~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~la  313 (330)
T 2hes_X          237 QEWVCEAIL--PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILA  313 (330)
T ss_dssp             EEEEEEEEC--CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEE
T ss_pred             ceeEEeeec--ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEE
Confidence               122221  22356788999999765 89999999999999998774  3333 356876 899999999  689999


Q ss_pred             EccceEEEeeecC
Q 021648          287 TGSSELSFWIPDL  299 (309)
Q Consensus       287 s~~~d~~~~~~~~  299 (309)
                      +|+.|..+.+|++
T Consensus       314 s~s~Dg~v~~W~~  326 (330)
T 2hes_X          314 TGGDDGIVNFWSL  326 (330)
T ss_dssp             EEETTSEEEEEEC
T ss_pred             EecCCCcEEEEEe
Confidence            9999855555554

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.7e-42  Score=326.45  Aligned_cols=286  Identities=16%  Similarity=0.225  Sum_probs=236.8

Q ss_pred             cceEecCCCcceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ...++.+|.+.|.+++|+|++. +|+||+.|++|++||..+++++.++.+|...|..++|+|+++.+++++.   |++|+
T Consensus       139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~---D~~i~  215 (611)
T 1nr0_A          139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG---DGTIV  215 (611)
T ss_dssp             BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEE
T ss_pred             CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC---CCcEE
Confidence            3456889999999999999987 5999999999999999999999999999999999999999999988764   89999


Q ss_pred             EEEccCCceEEEee-------ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC-----ceeEEECCC
Q 021648           82 LLSLHDNKYLRYFK-------GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-----RPAAAYDDQ  149 (309)
Q Consensus        82 ~~d~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-----~~~~~~~~~  149 (309)
                      +||+.+++.+..+.       +|.+.|.+++|+|++++|+|++.|++|++||++++++...+....     .....+ ..
T Consensus       216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~  294 (611)
T 1nr0_A          216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TK  294 (611)
T ss_dssp             EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE-CS
T ss_pred             EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE-cC
Confidence            99999999888884       799999999999999999999999999999999988776664321     112233 45


Q ss_pred             CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee-c----
Q 021648          150 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-K----  224 (309)
Q Consensus       150 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~----  224 (309)
                      ..+++++.++.+++||.....    ....+.+|...+.+++|+|||++|++++.|++|++||+.++.....+.. +    
T Consensus       295 ~~l~s~s~d~~i~~~~~~~~~----~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v  370 (611)
T 1nr0_A          295 QALVSISANGFINFVNPELGS----IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI  370 (611)
T ss_dssp             SCEEEEETTCCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred             CEEEEEeCCCcEEEEeCCCCC----cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceE
Confidence            567778889999999976432    2345667888999999999999999999999999999887654332100 0    


Q ss_pred             --------------------------------------------------C------------------------CCCCc
Q 021648          225 --------------------------------------------------P------------------------VSRNS  230 (309)
Q Consensus       225 --------------------------------------------------~------------------------~~~~~  230 (309)
                                                                        +                        .+...
T Consensus       371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~  450 (611)
T 1nr0_A          371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN  450 (611)
T ss_dssp             EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred             EEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCC
Confidence                                                              0                        01123


Q ss_pred             cceEEECCCCCEEEEEcCCCcEEEEECCCCce--EEEeecCCCCCcEEEECCCeeEEEEccce--EEEeee
Q 021648          231 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  297 (309)
Q Consensus       231 ~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~  297 (309)
                      +.+++|+|||++||+|+.|++|++||+.+++.  +.. ..|...|.+++|+||+++|++++.|  +++|..
T Consensus       451 v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~  520 (611)
T 1nr0_A          451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV  520 (611)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred             ceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEc
Confidence            45789999999999999999999999987643  334 6799999999999999999999998  555544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.6e-42  Score=297.36  Aligned_cols=286  Identities=17%  Similarity=0.263  Sum_probs=232.2

Q ss_pred             ccceEecCCCcceEEEEeCCC-CCEEEEeeCCCcEEEEEcCCCc-----eeeeeeccccceeEEEEecCCCEEEEEcCCC
Q 021648            2 EVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAAT-----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   75 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~-~~~l~t~s~D~~v~iWd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g   75 (309)
                      ++-.+|+||+++|++|+|+|+ +++|||||.|++|||||+.+++     +.+.+.+|...|..++|+|+++.+++++.  
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~--  106 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW--  106 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc--
Confidence            355689999999999999997 6899999999999999997643     46678899999999999999999998864  


Q ss_pred             CCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee-c--CceeEEECCC--C
Q 021648           76 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-Q--GRPAAAYDDQ--G  150 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~-~--~~~~~~~~~~--~  150 (309)
                       |+.|++|+............+...+..+.++++++.|++++.|+.+++||............ .  ......+.+.  .
T Consensus       107 -d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  185 (340)
T 4aow_A          107 -DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN  185 (340)
T ss_dssp             -TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred             -cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence             88999999999998888899999999999999999999999999999999876544322211 1  1223344332  2


Q ss_pred             -cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCC
Q 021648          151 -LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  229 (309)
Q Consensus       151 -~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  229 (309)
                       .+++++.|+.|++||++..+    ....+.++...+.+++|+|++++|++++.||.|++||+.+...+..+..    ..
T Consensus       186 ~~~~s~~~d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~----~~  257 (340)
T 4aow_A          186 PIIVSCGWDKLVKVWNLANCK----LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG----GD  257 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC----SS
T ss_pred             cEEEEEcCCCEEEEEECCCCc----eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC----Cc
Confidence             34556678999999987643    2445667778899999999999999999999999999999988877653    35


Q ss_pred             ccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe---------ecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          230 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW---------MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~---------~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      .+..++|+|++.+ ++++.|+.|++||++++..+..+         ..|...|++++|+|++++|++|+.|..+.+|++
T Consensus       258 ~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          258 IINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             CEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             eEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence            6788999998765 45667999999999988766554         368889999999999999999999844444443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2e-41  Score=323.45  Aligned_cols=285  Identities=18%  Similarity=0.257  Sum_probs=233.5

Q ss_pred             ceEecCCCcceEEEEeCCCC-CEEEEeeCCCcEEEEEcCCC-----ceeeeeeccccceeEEEEecCCCEEEEEcCCCCC
Q 021648            4 GMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAA-----TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD   77 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d   77 (309)
                      -..+++|++.|++|+|+|++ ++|+|||.|++|+|||+.+.     .+.+.+.+|...|.+++|+++++.+++++.   |
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~---D  451 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW---D  451 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET---T
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC---C
Confidence            34688999999999999865 79999999999999999753     455778899999999999999999998864   8


Q ss_pred             ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee---c--CceeEEECCCC--
Q 021648           78 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV---Q--GRPAAAYDDQG--  150 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~---~--~~~~~~~~~~~--  150 (309)
                      ++|++||+.+++.+..+.+|.+.|.+++|+|++++|+|++.|++|++||............   +  ......+++.+  
T Consensus       452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence            9999999999999999999999999999999999999999999999999865433222111   1  12345666654  


Q ss_pred             -cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCC
Q 021648          151 -LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  229 (309)
Q Consensus       151 -~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  229 (309)
                       .+++++.|+.|++||++..+    ....+.+|...+.+++|+|+|+++++++.||+|++||+.+++.+..+.    +..
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~----~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~----~~~  603 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCK----LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE----ANS  603 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB----CSS
T ss_pred             ceEEEEeCCCeEEEEECCCCc----EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec----CCC
Confidence             46667779999999997643    234567788899999999999999999999999999999998876654    235


Q ss_pred             ccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCC-------------------CCcEEEECCCeeEEEEccc
Q 021648          230 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT-------------------EPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-------------------~v~~l~~~p~~~~l~s~~~  290 (309)
                      .+..++|+|++.++++++ |+.|++||+.+++.+..+..+..                   .+++++|+|++++|++|+.
T Consensus       604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~  682 (694)
T 3dm0_A          604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT  682 (694)
T ss_dssp             CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence            678899999999888776 55699999999988776643211                   2578999999999999999


Q ss_pred             eEEEeeecCC
Q 021648          291 ELSFWIPDLS  300 (309)
Q Consensus       291 d~~~~~~~~~  300 (309)
                      |..+.+|++.
T Consensus       683 Dg~i~iW~i~  692 (694)
T 3dm0_A          683 DGVIRVWGIG  692 (694)
T ss_dssp             TSEEEEEEC-
T ss_pred             CCeEEEEecc
Confidence            9777666654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.4e-41  Score=313.71  Aligned_cols=280  Identities=19%  Similarity=0.313  Sum_probs=236.5

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ++...+.+|.+.|.+++|+|++++|++++.|++|++||.. +..+..+..|...+..++|+|+++.+++++.   |+.++
T Consensus       294 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---dg~v~  369 (577)
T 2ymu_A          294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASD---DKTVK  369 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEE
T ss_pred             cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeC---CCEEE
Confidence            4567788999999999999999999999999999999975 4567778888889999999999999988765   78999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEE-EEC
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAV-AFG  158 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~  158 (309)
                      +||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. +++....+..+.  .....+++++.++++ +.|
T Consensus       370 ~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d  447 (577)
T 2ymu_A          370 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD  447 (577)
T ss_dssp             EEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence            9995 56788899999999999999999999999999999999995 444444443322  234567777766655 468


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  238 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp  238 (309)
                      +.|++||...     ..+..+.++...+.+++|+||+++|++++.|+.|++||. +++++.++.   .|...+.+++|+|
T Consensus       448 ~~v~~w~~~~-----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~---~h~~~v~~l~~s~  518 (577)
T 2ymu_A          448 KTVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSP  518 (577)
T ss_dssp             SEEEEEETTS-----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE---CCSSCEEEEEECT
T ss_pred             CEEEEEECCC-----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe---CCCCCEEEEEEcC
Confidence            9999999632     123455667788999999999999999999999999995 677777765   3567889999999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP  297 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~  297 (309)
                      ||++|++++.|+.|++||. +++.+.++.+|...|.+++|+||+++|++++.|..+.+|
T Consensus       519 dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          519 DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence            9999999999999999996 678899999999999999999999999999998444443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-40  Score=292.01  Aligned_cols=284  Identities=13%  Similarity=0.187  Sum_probs=241.8

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      ...|.+|++.|++++|+|++++|++|+.|+.|++||+.+++++..+.+|...|..++|+++++.+++++.   |+.|++|
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---dg~i~iw  101 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA---DYSIKLW  101 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET---TTEEEEE
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeC---CCeEEEE
Confidence            3568999999999999999999999999999999999999999999999999999999999999988764   8899999


Q ss_pred             EccCCceEEEeeecccCEEEEEecCCCCeEEEecCC-----CcEEEeeCCCceeeeeee-----------ec----Ccee
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGLLR-----------VQ----GRPA  143 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D-----g~v~~Wd~~~~~~~~~~~-----------~~----~~~~  143 (309)
                      |+.+++.+..+. |...|.+++|+|++++|++++.+     +.|++||++.......+.           ..    ....
T Consensus       102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          102 DVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             ECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            999999888888 89999999999999999999999     999999987554221111           00    2234


Q ss_pred             EEECCCCcEEEE-EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648          144 AAYDDQGLVFAV-AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  222 (309)
Q Consensus       144 ~~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~  222 (309)
                      ..+.+++.++++ +.++.|++||++...   .....+..+...+.+++|+|++++|++++.|+.|++||+.+++.+..+.
T Consensus       181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          181 AGWSTKGKYIIAGHKDGKISKYDVSNNY---EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EEECGGGCEEEEEETTSEEEEEETTTTT---EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEcCCCCEEEEEcCCCEEEEEECCCCc---EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence            556666655554 568999999987521   1234455567789999999999999999999999999999998888775


Q ss_pred             ecCCCCCccceEEECCCCCEEEEEcCCC--------------cEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEc
Q 021648          223 VKPVSRNSTLEASFSPEGMFVISGSGDG--------------SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG  288 (309)
Q Consensus       223 ~~~~~~~~~~~~~~sp~g~~l~s~s~Dg--------------~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~  288 (309)
                          +...+..++|+|+++++++++.++              .+++||+.+++.+..+.+|...|.+++|+|++++|+++
T Consensus       258 ----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  333 (369)
T 3zwl_B          258 ----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG  333 (369)
T ss_dssp             ----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence                345678899999999999999998              89999999999999999999999999999999999999


Q ss_pred             cce--EEEeeec
Q 021648          289 SSE--LSFWIPD  298 (309)
Q Consensus       289 ~~d--~~~~~~~  298 (309)
                      +.|  +++|..+
T Consensus       334 ~~dg~v~iw~~~  345 (369)
T 3zwl_B          334 GEDGFIRLHHFE  345 (369)
T ss_dssp             ETTSEEEEEEEC
T ss_pred             cCCCeEEEEECc
Confidence            988  5555443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3e-41  Score=290.25  Aligned_cols=250  Identities=14%  Similarity=0.181  Sum_probs=202.4

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC--CceeeeeeccccceeEEEEecC--CCEEEEEcCCCCCce
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDES   79 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~s~~g~d~~   79 (309)
                      ++.+.+|++.|.+++|+|+|++||||+.|++|+|||+.+  ++++.++.+|..+|..++|+++  ++.+++++.   |++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~---D~~   78 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY---DGK   78 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET---TTE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC---CCE
Confidence            578899999999999999999999999999999999974  4678899999999999999864  677887764   899


Q ss_pred             eEEEEccCCc--eEEEeeecccCEEEEEecCC--CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEE
Q 021648           80 LRLLSLHDNK--YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  155 (309)
Q Consensus        80 i~~~d~~~~~--~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (309)
                      |++||+++++  .+..+.+|...|.+++|+|+  +++|++++.|++|++||++++......                   
T Consensus        79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~-------------------  139 (297)
T 2pm7_B           79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI-------------------  139 (297)
T ss_dssp             EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE-------------------
T ss_pred             EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee-------------------
Confidence            9999998874  56778899999999999997  889999999999999998765311000                   


Q ss_pred             EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-------------CCEEEEEeCCCcEEEEECCCCe----Ee
Q 021648          156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-------------GRLMLLTTMEGHIHVLDSFRGT----LL  218 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-------------g~~l~~~~~dg~v~i~d~~~~~----~~  218 (309)
                                            .+.++...+.+++|+|+             +++|++++.|++|++||..++.    +.
T Consensus       140 ----------------------~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~  197 (297)
T 2pm7_B          140 ----------------------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  197 (297)
T ss_dssp             ----------------------EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             ----------------------eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE
Confidence                                  01122334556666665             6799999999999999987765    33


Q ss_pred             EEeeecCCCCCccceEEECCCC---CEEEEEcCCCcEEEEECCCCc---eEEEe--ecCCCCCcEEEECCCeeEEEEccc
Q 021648          219 STYNVKPVSRNSTLEASFSPEG---MFVISGSGDGSVYAWSVRSGK---EVASW--MSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~sp~g---~~l~s~s~Dg~i~vwd~~~~~---~~~~~--~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      .++.   .|...|.+++|+|++   ++||+++.|++|++||+.+.+   ....+  ..|...+.+++|+|++++|++++.
T Consensus       198 ~~l~---~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~  274 (297)
T 2pm7_B          198 STLE---GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (297)
T ss_dssp             EEEC---CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred             EEec---CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence            3333   466789999999995   899999999999999997743   12223  467888999999999999999998


Q ss_pred             e--EEEeeecCC
Q 021648          291 E--LSFWIPDLS  300 (309)
Q Consensus       291 d--~~~~~~~~~  300 (309)
                      |  +++|...+.
T Consensus       275 D~~v~lw~~~~~  286 (297)
T 2pm7_B          275 DNKVTLWKENLE  286 (297)
T ss_dssp             TSCEEEEEECTT
T ss_pred             CCcEEEEEECCC
Confidence            8  777766543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.7e-41  Score=301.93  Aligned_cols=247  Identities=19%  Similarity=0.362  Sum_probs=215.0

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ++.++|.+|.+.|.+++|+|++++|+||+.|++|+|||+.++++++++.+|...|..++|+|++..+++++.   |++|+
T Consensus       141 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~---D~~i~  217 (410)
T 1vyh_C          141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR---DKTIK  217 (410)
T ss_dssp             CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET---TSEEE
T ss_pred             cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeC---CCeEE
Confidence            467889999999999999999999999999999999999999999999999999999999999999988764   89999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCC----------
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQ----------  149 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~----------  149 (309)
                      +||+.+++++..+.+|...|.++.++|++++|++|+.|++|++||++++++...+..+.  .....+.+.          
T Consensus       218 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  297 (410)
T 1vyh_C          218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT  297 (410)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred             EEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc
Confidence            99999999999999999999999999999999999999999999999887766554332  223444442          


Q ss_pred             ----------C-cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe
Q 021648          150 ----------G-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL  218 (309)
Q Consensus       150 ----------~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~  218 (309)
                                + .+++++.|+.|++||++...    .+..+.+|...+.+++|+|+|++|++++.||+|++||..+++.+
T Consensus       298 ~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~  373 (410)
T 1vyh_C          298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM  373 (410)
T ss_dssp             SCC-------CCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC
T ss_pred             cccccccCCCCCEEEEEeCCCeEEEEECCCCc----eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE
Confidence                      3 45556678999999987643    34556677788999999999999999999999999999998888


Q ss_pred             EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648          219 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~  258 (309)
                      ..+.   .|...|.+++|+|++.+|++||.|++|++|+++
T Consensus       374 ~~~~---~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          374 KTLN---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEE---CCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEc---CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            7775   356789999999999999999999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3e-40  Score=287.29  Aligned_cols=245  Identities=15%  Similarity=0.223  Sum_probs=217.4

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      ...+.+|...|.+++|+|++.+++|++.|++|++||+.+++++..+..+...+..++|+|+++.+++++.   |+.+++|
T Consensus        73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~---dg~v~i~  149 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH---VGKVNIF  149 (321)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT---TSEEEEE
T ss_pred             eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC---CCcEEEE
Confidence            4568899999999999999999999999999999999999999999998888999999999999988764   8899999


Q ss_pred             EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEE-ECCE
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVA-FGGY  160 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~  160 (309)
                      |+++++....+..|...|.+++|+|++++|++++.|++|++||++++++...+....  ...+.+.+++.+++++ .|+.
T Consensus       150 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~  229 (321)
T 3ow8_A          150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY  229 (321)
T ss_dssp             ETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC
T ss_pred             EcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe
Confidence            999999999999999999999999999999999999999999999998877665332  3456788877666655 5899


Q ss_pred             EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC
Q 021648          161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  240 (309)
Q Consensus       161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g  240 (309)
                      |++||++..+    ....+.++...+.+++|+|++++|++++.|++|++||+.+++++.++.   .|...+..++|+|+|
T Consensus       230 i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~h~~~v~~v~~s~~g  302 (321)
T 3ow8_A          230 IKIYDVQHAN----LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF---DHQDQVWGVKYNGNG  302 (321)
T ss_dssp             EEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTS
T ss_pred             EEEEECCCcc----eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc---CCCCcEEEEEECCCC
Confidence            9999987543    244667788889999999999999999999999999999999888775   356788999999999


Q ss_pred             CEEEEEcCCCcEEEEECC
Q 021648          241 MFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       241 ~~l~s~s~Dg~i~vwd~~  258 (309)
                      ++|++++.|++|++||..
T Consensus       303 ~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          303 SKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             SEEEEEETTCCEEEEECC
T ss_pred             CEEEEEeCCCeEEEEeCC
Confidence            999999999999999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.7e-41  Score=299.16  Aligned_cols=287  Identities=14%  Similarity=0.172  Sum_probs=237.0

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc------eeeeeeccccceeEEEEecC----C---CEEE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT------CLKTINSKKYGVDLVCFTSH----P---TTVI   69 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~~~   69 (309)
                      +.+.+.+|++.|++++|+|  ++|++|+.|++|+|||+.+++      ++..+..|...|..++|+++    +   ..++
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            4567789999999999999  799999999999999999887      78888999999999999999    8   8888


Q ss_pred             EEcCCCCCceeEEEEccCCce-----EEEeeec-----ccCEEEEEec----CCCCe-EEEecCCCcEEEeeCCC-----
Q 021648           70 YSSKNGWDESLRLLSLHDNKY-----LRYFKGH-----HDRVVSLSLC----SSKDC-FISGSLDRTVLLWDQRA-----  129 (309)
Q Consensus        70 ~~s~~g~d~~i~~~d~~~~~~-----~~~~~~h-----~~~v~~v~~~----~~~~~-l~s~s~Dg~v~~Wd~~~-----  129 (309)
                      +++.   |+.|++||+.+++.     +..+.+|     ...|.+++|+    |+++. |++++.||.|++||+++     
T Consensus        86 s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           86 TTSF---SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  162 (397)
T ss_dssp             EEET---TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEcC---CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence            7764   88999999999887     8889999     5999999999    99999 99999999999999987     


Q ss_pred             -ceeee-----eeee---------cCceeEEECCCCcEEEEE-ECCEEEEEECCCCCcCCceEEEeCC---C---CCCCe
Q 021648          130 -EKCQG-----LLRV---------QGRPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGG---D---ISDAN  187 (309)
Q Consensus       130 -~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~---~---~~~~~  187 (309)
                       .+...     .+..         .....+.+.+++ +++++ .++.|++||++..+    .+..+..   +   ...+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~h~~~~~~i~  237 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR----PLYNFESQHSMINNSNSIR  237 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE----EEEEEECCC---CCCCCEE
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc----eeEEEeccccccccCCccc
Confidence             55443     3321         123456677777 55554 57999999997632    2334444   5   67899


Q ss_pred             EEEEccCCCEEEEEeCC---CcEEEEECCCCeEeEEeeecC----------CCCCccceEEECCCCCEEEEEcCCCcEEE
Q 021648          188 VVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKP----------VSRNSTLEASFSPEGMFVISGSGDGSVYA  254 (309)
Q Consensus       188 ~v~~s~dg~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~----------~~~~~~~~~~~sp~g~~l~s~s~Dg~i~v  254 (309)
                      +++|+|++++|++++.|   +.|++||+.+++.+..+....          .+...+..++|+|++++|++++.|+.|++
T Consensus       238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  317 (397)
T 1sq9_A          238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF  317 (397)
T ss_dssp             EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence            99999999999999999   999999999998887765310          05577889999999999999999999999


Q ss_pred             EECCCCceEEEee------cC---------------CCCCcEEEECCCe----------eEEEEccceEEEeeecC
Q 021648          255 WSVRSGKEVASWM------SF---------------DTEPPVIKWTPGS----------LMFVTGSSELSFWIPDL  299 (309)
Q Consensus       255 wd~~~~~~~~~~~------~~---------------~~~v~~l~~~p~~----------~~l~s~~~d~~~~~~~~  299 (309)
                      ||+.+++.+..+.      .|               ...|.+++|+|++          ++|++++.|..+.+|++
T Consensus       318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  393 (397)
T ss_dssp             EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence            9999999999998      78               8999999999998          79999998844444443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.3e-40  Score=293.01  Aligned_cols=289  Identities=13%  Similarity=0.170  Sum_probs=226.2

Q ss_pred             ccceEecCCCcceEEEEeCCCC-CEEEEeeCCCcEEEEEcCCCceeeeee--ccccceeEEEEec-CCCEEEEEcCCCCC
Q 021648            2 EVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTS-HPTTVIYSSKNGWD   77 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~~~~~s~~g~d   77 (309)
                      ++..++.+|.+.|.+++|+|++ ++|++|+.|++|+|||+.+++....+.  +|...|..++|+| ++..+++++.   |
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---d  140 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI---R  140 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET---T
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC---C
Confidence            4567889999999999999999 999999999999999999888877765  5888999999999 5667777654   8


Q ss_pred             ceeEEEEccCCceEEEeeecc---cCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCc-
Q 021648           78 ESLRLLSLHDNKYLRYFKGHH---DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGL-  151 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~-  151 (309)
                      +.|++||+.+ +.+..+..|.   ..|.+++|+|++++|++++.|+.|++||++ +++...+..+.  ...+.+.+++. 
T Consensus       141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred             CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCC
Confidence            8999999986 5566665544   889999999999999999999999999985 44444443322  33466777765 


Q ss_pred             -EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC---
Q 021648          152 -VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---  226 (309)
Q Consensus       152 -~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~---  226 (309)
                       +++++.|+.|++||++..+......... ++...+.+++|+| +++++++++.|+.|++||+.+++....+..+..   
T Consensus       219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  297 (383)
T 3ei3_B          219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF  297 (383)
T ss_dssp             EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred             EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence             5555568999999998754322222233 4667899999999 999999999999999999988776655443211   


Q ss_pred             -CC----------CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeec--CCCCCcEEEECCCeeEEEEccceEE
Q 021648          227 -SR----------NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS--FDTEPPVIKWTPGSLMFVTGSSELS  293 (309)
Q Consensus       227 -~~----------~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~s~~~d~~  293 (309)
                       +.          ..+..++|+|+|++  +|+.|+.|++||+.+++.+..+..  |...+..++|+|++++|++++ |..
T Consensus       298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~  374 (383)
T 3ei3_B          298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN  374 (383)
T ss_dssp             TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred             ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence             11          22334667777776  888999999999999999999876  567788889999999999996 644


Q ss_pred             EeeecC
Q 021648          294 FWIPDL  299 (309)
Q Consensus       294 ~~~~~~  299 (309)
                      +.+|++
T Consensus       375 i~iw~~  380 (383)
T 3ei3_B          375 ILIWNR  380 (383)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            544444

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.2e-39  Score=303.87  Aligned_cols=291  Identities=19%  Similarity=0.339  Sum_probs=243.4

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +.++.+.+|...|.+++|+|++++|++++.|++|++||. ++++++.+.+|...+..++|+|++..+++++.   |++++
T Consensus       253 ~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~---d~~i~  328 (577)
T 2ymu_A          253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASD---DKTVK  328 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEE
T ss_pred             CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeC---CCeEE
Confidence            456788999999999999999999999999999999996 46788889999999999999999999988764   88999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEE-EEEC
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFA-VAFG  158 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~  158 (309)
                      +||+.. +.+..+.+|...|.+++|+|++++|++++.|+++++||. +++....+..+.  ...+.+++++.+++ ++.|
T Consensus       329 ~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d  406 (577)
T 2ymu_A          329 LWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD  406 (577)
T ss_dssp             EEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             EEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCC
Confidence            999865 457788999999999999999999999999999999995 444544443322  23466777776555 4568


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  238 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp  238 (309)
                      +.|++||...    . .+..+.++...+.+++|+||++++++++.|+.|++||. +++.+..+.   .|...+.+++|+|
T Consensus       407 ~~v~~~~~~~----~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~---~~~~~v~~~~~sp  477 (577)
T 2ymu_A          407 KTVKLWNRNG----Q-LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSP  477 (577)
T ss_dssp             SEEEEECTTC----C-EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEE---CCSSCEEEEEECT
T ss_pred             CEEEEEeCCC----C-EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEc---CCCCCEEEEEEcC
Confidence            9999999532    1 23455567788999999999999999999999999996 456666554   3557788999999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeecCCCccccccC
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKLGAYVGR  308 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~~~~~~~~~~~  308 (309)
                      |+++|++++.|++|++||. +++.+..+.+|...|++++|+|++++|++++.|  +++|......+..+.||
T Consensus       478 d~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h  548 (577)
T 2ymu_A          478 DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH  548 (577)
T ss_dssp             TSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECC
T ss_pred             CCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCC
Confidence            9999999999999999996 678899999999999999999999999999988  66666555566667665

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.1e-40  Score=288.48  Aligned_cols=241  Identities=20%  Similarity=0.285  Sum_probs=198.7

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeee----eccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI----NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      .|...|.+++|+|++ .|++|+.|++|+|||+.+++++..+    .+|...|.+++|+|+++.+++++.   |++|++||
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~---d~~i~iwd  155 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK---DICIKVWD  155 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET---TSCEEEEE
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC---CCeEEEEE
Confidence            466789999999985 7889999999999999998876543    478889999999999999998865   88999999


Q ss_pred             ccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeeecC----ceeEEECC-CCcEEEE-EE
Q 021648           85 LHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQG----RPAAAYDD-QGLVFAV-AF  157 (309)
Q Consensus        85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~-~~  157 (309)
                      +++++.+..+.+|.+.|++++|++++. .|+|++.|++|++||++++++...+....    ...+.+.+ .+.++++ +.
T Consensus       156 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~  235 (344)
T 4gqb_B          156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE  235 (344)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred             CCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc
Confidence            999999999999999999999999875 78999999999999999988776654322    23455555 4455554 56


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      |+.|++||++..+.    +..+.+|...+.+++|+|+| ++|++++.|++|++||..+++++.. .   .|...|.+++|
T Consensus       236 dg~v~~wd~~~~~~----~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~-~---~H~~~V~~v~~  307 (344)
T 4gqb_B          236 NGTVSLVDTKSTSC----VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-Q---AHRDFVRDATW  307 (344)
T ss_dssp             TSEEEEEESCC--C----CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE-C---CCSSCEEEEEE
T ss_pred             CCcEEEEECCCCcE----EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE-c---CCCCCEEEEEE
Confidence            89999999986432    34566788899999999998 5789999999999999998876542 2   46788999999


Q ss_pred             CCCCC-EEEEEcCCCcEEEEECCCCc
Q 021648          237 SPEGM-FVISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       237 sp~g~-~l~s~s~Dg~i~vwd~~~~~  261 (309)
                      +|+++ .|+|||.|++|++|++.+..
T Consensus       308 sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          308 SPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             eCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            99986 57799999999999998753

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.4e-40  Score=288.33  Aligned_cols=283  Identities=15%  Similarity=0.207  Sum_probs=229.3

Q ss_pred             ccceEecCCCcceEEEEeCCC---CCEEEEeeCCCcEEEEEcCC-Ccee-eeeeccccceeEEEEecCCCEEEEEcCCCC
Q 021648            2 EVGMSFRDYNGRISSMDFHKS---SSYLVTASDDESIRLYDVTA-ATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGW   76 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~---~~~l~t~s~D~~v~iWd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   76 (309)
                      +..+.+.+|.+.|++++|+|+   |++|++|+.|++|+|||+.+ +..+ ..+.+|...|..++|+|+++.+++++.   
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---  106 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC---  106 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET---
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC---
Confidence            456778999999999999999   69999999999999999997 5555 778889999999999999999998864   


Q ss_pred             CceeEEEEccCCceEEEeeecccCEEEEEe--cCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEE
Q 021648           77 DESLRLLSLHDNKYLRYFKGHHDRVVSLSL--CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA  154 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~--~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (309)
                      |+.|++||+++++.+. +.+|...|.+++|  ++++++|++++.|+.|++||++++++...+...............++.
T Consensus       107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (368)
T 3mmy_A          107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVV  185 (368)
T ss_dssp             TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEE
T ss_pred             CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEE
Confidence            8899999999988665 6779999999999  889999999999999999999988877666554433222222346666


Q ss_pred             EEECCEEEEEECCCCCcCCceEEEe-CCCCCCCeEEEEccCCCE----EEEEeCCCcEEEEECCCC---eEeEEeeecCC
Q 021648          155 VAFGGYIRMFDARKYEKGPFDIFSV-GGDISDANVVKFSNDGRL----MLLTTMEGHIHVLDSFRG---TLLSTYNVKPV  226 (309)
Q Consensus       155 ~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~v~~s~dg~~----l~~~~~dg~v~i~d~~~~---~~~~~~~~~~~  226 (309)
                      +..++.+++|+++....   ..... ........++++.+++..    +++++.||.|++||....   ..+..+..+..
T Consensus       186 ~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  262 (368)
T 3mmy_A          186 ATAERGLIVYQLENQPS---EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS  262 (368)
T ss_dssp             EEGGGCEEEEECSSSCE---EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred             EeCCCcEEEEEeccccc---hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence            77789999999876432   11111 122235567777766655    999999999999999876   33444432211


Q ss_pred             ---------CCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          227 ---------SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       227 ---------~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                               +...+.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|
T Consensus       263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred             ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence                     11158899999999999999999999999999999999999999999999999999999999876

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-39  Score=278.76  Aligned_cols=279  Identities=18%  Similarity=0.271  Sum_probs=229.9

Q ss_pred             CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      +++.++|.+|++.|++++| |++++|++|+.|++|++||+.++++...+..|...+..++|+|++..+++++.   |+.+
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i   83 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK---DTMI   83 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET---TSCE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC---CCeE
Confidence            3577889999999999999 99999999999999999999999999999999999999999999999998865   7899


Q ss_pred             EEEEccCC---ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc--eeEEEC--CCCcEE
Q 021648           81 RLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYD--DQGLVF  153 (309)
Q Consensus        81 ~~~d~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~--~~~~~~--~~~~~~  153 (309)
                      ++|++...   +.+..+.+|...|.++.|  +++.|++++.|+.|++||  ..+....+.....  ....+.  ....++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (313)
T 3odt_A           84 NGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFL  159 (313)
T ss_dssp             EEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred             EEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence            99998654   567788999999999999  567999999999999999  3444444433222  223333  344566


Q ss_pred             EEEECCEEEEEECCCCCcCCceEEEeCC-CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccc
Q 021648          154 AVAFGGYIRMFDARKYEKGPFDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  232 (309)
Q Consensus       154 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  232 (309)
                      +++.++.|++||...      ....... +...+.+++++|++. +++++.||.|++||+.+++.+..+..   +...+.
T Consensus       160 ~~~~d~~i~i~d~~~------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~  229 (313)
T 3odt_A          160 TASADKTIKLWQNDK------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG---HESFVY  229 (313)
T ss_dssp             EEETTSCEEEEETTE------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEEC---CSSCEE
T ss_pred             EEECCCCEEEEecCc------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhc---CCceEE
Confidence            666789999999432      1223333 567899999999999 89999999999999999998887763   557788


Q ss_pred             eEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeecC
Q 021648          233 EASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  299 (309)
Q Consensus       233 ~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~~  299 (309)
                      .++|+|++ .+++++.||.|++||+.+++.+..+..|...+.+++|+|++++ ++++.|  +++|..+.
T Consensus       230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDI-IVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCE-EEEETTSCEEEEESCG
T ss_pred             EEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCE-EEEeCCCcEEEEeCCC
Confidence            99999999 6899999999999999999999999999999999999999984 456666  66665543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.1e-40  Score=290.32  Aligned_cols=291  Identities=15%  Similarity=0.231  Sum_probs=226.6

Q ss_pred             eEecCCCcceEEEEeCCCCCE-EEEeeC---CCcEEEEEcCCCceeeeee-ccccceeEEEEecC---CCEEEEEcCCCC
Q 021648            5 MSFRDYNGRISSMDFHKSSSY-LVTASD---DESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSH---PTTVIYSSKNGW   76 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~-l~t~s~---D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~~~~~s~~g~   76 (309)
                      ..+++|.+.|.+++|+|++.. +++|+.   |++|+|||+.+++...... .|...|.+++|+|+   +..+++++.   
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---   88 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF---   88 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET---
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC---
Confidence            456789999999999999965 556666   9999999999888765443 67788999999998   577887764   


Q ss_pred             CceeEEEEccCCc-eEEEeeecccCEEEEE------ecCCCCeEEEecCCCcEEEeeCCCce-eeeeeeec-C-----ce
Q 021648           77 DESLRLLSLHDNK-YLRYFKGHHDRVVSLS------LCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQ-G-----RP  142 (309)
Q Consensus        77 d~~i~~~d~~~~~-~~~~~~~h~~~v~~v~------~~~~~~~l~s~s~Dg~v~~Wd~~~~~-~~~~~~~~-~-----~~  142 (309)
                      |+.|++||+.+++ .+..+.+|...|.++.      |+|+++.|++++.|+.|++||+++++ ....+... .     ..
T Consensus        89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  168 (357)
T 3i2n_A           89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW  168 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred             CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence            8899999999988 8899999999999995      46789999999999999999998876 44443221 1     11


Q ss_pred             eEE----ECCCCcEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc---CCCEEEEEeCCCcEEEEECCC
Q 021648          143 AAA----YDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN---DGRLMLLTTMEGHIHVLDSFR  214 (309)
Q Consensus       143 ~~~----~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~---dg~~l~~~~~dg~v~i~d~~~  214 (309)
                      ...    +++++.+++++ .++.|++||++..+.     .....+...+.+++|+|   ++.++++++.||.|++||+.+
T Consensus       169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  243 (357)
T 3i2n_A          169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT  243 (357)
T ss_dssp             EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred             EEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence            223    44566555555 579999999986432     22233456799999999   999999999999999999877


Q ss_pred             CeEeEEee--ecCCCCCccceEEECCCCC-EEEEEcCCCcEEEEECCCC-------------------ceEEEeecCCCC
Q 021648          215 GTLLSTYN--VKPVSRNSTLEASFSPEGM-FVISGSGDGSVYAWSVRSG-------------------KEVASWMSFDTE  272 (309)
Q Consensus       215 ~~~~~~~~--~~~~~~~~~~~~~~sp~g~-~l~s~s~Dg~i~vwd~~~~-------------------~~~~~~~~~~~~  272 (309)
                      +..+..+.  ....+...+..++|+|+++ ++++++.||.|++||+.++                   +.+..+..|...
T Consensus       244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  323 (357)
T 3i2n_A          244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP  323 (357)
T ss_dssp             EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC
T ss_pred             CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC
Confidence            65543332  1123567889999999998 8999999999999999754                   356778899999


Q ss_pred             CcEEEECCCeeEEE-EccceEEEeeecCCCcc
Q 021648          273 PPVIKWTPGSLMFV-TGSSELSFWIPDLSKLG  303 (309)
Q Consensus       273 v~~l~~~p~~~~l~-s~~~d~~~~~~~~~~~~  303 (309)
                      |.+++|+|++++|+ +++.|..+.+|++.++.
T Consensus       324 v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          324 ISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             eeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            99999999999887 79888666666665553

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1e-38  Score=277.18  Aligned_cols=278  Identities=11%  Similarity=0.172  Sum_probs=228.7

Q ss_pred             ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeee---e--ccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI---N--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~---~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ..+|.+.|.+++|+|++++|++++ |++|++||+.+++....+   .  .|...+..++|+|+++.+++++.   |+.|+
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~  122 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE---ASTLS  122 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES---SSEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC---CCcEE
Confidence            347999999999999999999999 999999999887654433   3  67788999999999998888764   78999


Q ss_pred             EEEccCCc--eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEE-EE
Q 021648           82 LLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFA-VA  156 (309)
Q Consensus        82 ~~d~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~  156 (309)
                      +||+.+++  ....+.+|...|.+++|+|++++|++++.|+.|++||+++++....+..+.  .....+.+++..++ ++
T Consensus       123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  202 (337)
T 1gxr_A          123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG  202 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe
Confidence            99999877  667788999999999999999999999999999999999888776665332  23456777765554 45


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      .++.|++||++..+.    .... .+...+.+++++|+++++++++.++.|++||..+++... +.   .+...+..++|
T Consensus       203 ~dg~i~~~d~~~~~~----~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~---~~~~~v~~~~~  273 (337)
T 1gxr_A          203 LDNTVRSWDLREGRQ----LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH---LHESCVLSLKF  273 (337)
T ss_dssp             TTSEEEEEETTTTEE----EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC---CCSSCEEEEEE
T ss_pred             cCCcEEEEECCCCce----Eeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec---CCccceeEEEE
Confidence            689999999876431    1112 234578999999999999999999999999998877543 22   35577889999


Q ss_pred             CCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeec
Q 021648          237 SPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD  298 (309)
Q Consensus       237 sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~  298 (309)
                      +|++++|++++.||.|++||+.+++.+.. ..|...+.+++|+|++++|++++.|..+.+|+
T Consensus       274 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            99999999999999999999999887754 45788999999999999999999885444444

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-39  Score=290.88  Aligned_cols=278  Identities=15%  Similarity=0.199  Sum_probs=232.1

Q ss_pred             cCCCcceEEEEeCCCCC-EEEEeeCCCcEEEEEc----CCCc------eeeeeec----------cccceeEEEEecCCC
Q 021648            8 RDYNGRISSMDFHKSSS-YLVTASDDESIRLYDV----TAAT------CLKTINS----------KKYGVDLVCFTSHPT   66 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~   66 (309)
                      ..|.++|.+++|+|+++ +||+|+.|++|++||+    .+++      ....+..          |...|..++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            34669999999999999 9999999999999999    8887      3444443          566899999999999


Q ss_pred             EEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC------
Q 021648           67 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG------  140 (309)
Q Consensus        67 ~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~------  140 (309)
                      .+++++.   |+.|++|| .+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+....      
T Consensus       122 ~l~~~~~---dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          122 SIVTGVE---NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             EEEEEET---TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred             EEEEEeC---CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence            9988864   78999999 6778889999999999999999999999999999999999999888766554322      


Q ss_pred             -----------ceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEE
Q 021648          141 -----------RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV  209 (309)
Q Consensus       141 -----------~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i  209 (309)
                                 .....+.+++.+++++.++.|++||++..+.    ...+..+...+.+++++|+++++++++.|+.|++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  273 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP----TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI  273 (425)
T ss_dssp             --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC----SEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce----eeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence                       2234455667788888899999999886432    2344466678999999999999999999999999


Q ss_pred             EECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEcc
Q 021648          210 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       210 ~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~  289 (309)
                      ||+.+++.+..+.   .+...+..++|+|++ ++++++.|+.|++||+.+++.+..+..|...+.+++|+|++++|++++
T Consensus       274 ~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  349 (425)
T 1r5m_A          274 WHGGNGNSQNCFY---GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF  349 (425)
T ss_dssp             ECSSSBSCSEEEC---CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE
T ss_pred             EECCCCccceEec---CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE
Confidence            9999888777664   355678899999999 999999999999999999999999999999999999999999999999


Q ss_pred             ce--EEEeee
Q 021648          290 SE--LSFWIP  297 (309)
Q Consensus       290 ~d--~~~~~~  297 (309)
                      .|  +++|..
T Consensus       350 ~dg~i~i~~~  359 (425)
T 1r5m_A          350 MDGQVNVYDL  359 (425)
T ss_dssp             TTSCEEEEEC
T ss_pred             CCCeEEEEEC
Confidence            87  555544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.3e-40  Score=288.73  Aligned_cols=248  Identities=14%  Similarity=0.184  Sum_probs=191.5

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEec--CCCEEEEEcCCCCCcee
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESL   80 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~~~~~s~~g~d~~i   80 (309)
                      +.+.+|++.|++++|+|+|++|||||.|++|+|||+.++.  ++.++.+|...|..++|++  +++.+++++.   |++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~---D~~v   83 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY---DRKV   83 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET---TSCE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC---CCEE
Confidence            4457999999999999999999999999999999998764  4678899999999999976  3778887764   8999


Q ss_pred             EEEEccCCc--eEEEeeecccCEEEEEecCC--CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEE
Q 021648           81 RLLSLHDNK--YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA  156 (309)
Q Consensus        81 ~~~d~~~~~--~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (309)
                      ++||+++++  .+..+.+|.+.|++++|+|+  +.+|++++.|++|++||++.+........                  
T Consensus        84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~------------------  145 (316)
T 3bg1_A           84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKI------------------  145 (316)
T ss_dssp             EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCB------------------
T ss_pred             EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeee------------------
Confidence            999998874  56778899999999999997  78999999999999999876521111000                  


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-----------------CCEEEEEeCCCcEEEEECCCCe---
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-----------------GRLMLLTTMEGHIHVLDSFRGT---  216 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-----------------g~~l~~~~~dg~v~i~d~~~~~---  216 (309)
                                            ..++...+.+++|+|+                 +++|++++.|++|++||...+.   
T Consensus       146 ----------------------~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~  203 (316)
T 3bg1_A          146 ----------------------NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK  203 (316)
T ss_dssp             ----------------------TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE
T ss_pred             ----------------------eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc
Confidence                                  0011122333444443                 5789999999999999987542   


Q ss_pred             EeEEeeecCCCCCccceEEECCCC----CEEEEEcCCCcEEEEECCCC---c-eEEEeecCCCCCcEEEECCCeeEEEEc
Q 021648          217 LLSTYNVKPVSRNSTLEASFSPEG----MFVISGSGDGSVYAWSVRSG---K-EVASWMSFDTEPPVIKWTPGSLMFVTG  288 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~sp~g----~~l~s~s~Dg~i~vwd~~~~---~-~~~~~~~~~~~v~~l~~~p~~~~l~s~  288 (309)
                      .+..+.   .|...|.+++|+|++    ++|++|+.|++|++||+.+.   + ....+..|...|.+++|+|++++|+++
T Consensus       204 ~~~~l~---~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~  280 (316)
T 3bg1_A          204 EEQKLE---AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS  280 (316)
T ss_dssp             EEECCB---CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred             eeeecc---cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence            333333   466789999999987    89999999999999999763   1 233456788999999999999999999


Q ss_pred             cce--EEEeeec
Q 021648          289 SSE--LSFWIPD  298 (309)
Q Consensus       289 ~~d--~~~~~~~  298 (309)
                      +.|  +++|...
T Consensus       281 ~~D~~v~lw~~~  292 (316)
T 3bg1_A          281 GGDNKVTLWKES  292 (316)
T ss_dssp             ESSSCEEEEEEC
T ss_pred             cCCCeEEEEEEC
Confidence            988  6667654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-38  Score=279.38  Aligned_cols=246  Identities=22%  Similarity=0.313  Sum_probs=206.2

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc----eeeeeeccccceeEEEEecCCCEEEEEcCCCCC
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD   77 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d   77 (309)
                      +....+..|...|.+++|+|++++|++|+.|+++++||+.+++    ....+.+|...+.++.|++++. +++++.   |
T Consensus        88 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~---d  163 (340)
T 1got_B           88 NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG---D  163 (340)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEET---T
T ss_pred             CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEEC---C
Confidence            3456788999999999999999999999999999999998653    4566788888899999988764 666553   8


Q ss_pred             ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEE
Q 021648           78 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAV  155 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  155 (309)
                      ++|++||+++++.+..+.+|.+.|.+++|+|++++|++++.|++|++||++++++...+..+.  .....+.+++.++++
T Consensus       164 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s  243 (340)
T 1got_B          164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT  243 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEE
Confidence            899999999999999999999999999999999999999999999999999888776664332  345677777765555


Q ss_pred             -EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          156 -AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       156 -~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                       +.|+.|++||++...  ....+........+.+++|+|+|+++++++.|+.|++||..++..+..+.   .|...+.++
T Consensus       244 ~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~---~h~~~v~~~  318 (340)
T 1got_B          244 GSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA---GHDNRVSCL  318 (340)
T ss_dssp             EETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEE
T ss_pred             EcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee---cCCCcEEEE
Confidence             468999999997643  11222222333468999999999999999999999999999988887765   366789999


Q ss_pred             EECCCCCEEEEEcCCCcEEEEE
Q 021648          235 SFSPEGMFVISGSGDGSVYAWS  256 (309)
Q Consensus       235 ~~sp~g~~l~s~s~Dg~i~vwd  256 (309)
                      +|+|+|++|+|||.|++|+|||
T Consensus       319 ~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          319 GVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECTTSSCEEEEETTSCEEEEC
T ss_pred             EEcCCCCEEEEEcCCccEEecC
Confidence            9999999999999999999997

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.1e-39  Score=282.65  Aligned_cols=283  Identities=13%  Similarity=0.141  Sum_probs=233.3

Q ss_pred             CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc---eeeeeeccccceeEEEEecCCC-EEEEEcCCCC
Q 021648            1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---CLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGW   76 (309)
Q Consensus         1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~   76 (309)
                      |+......+|++.|++++|+|++++|++++.|++|+|||+.+++   ....+..|...+..++|+++++ .+++++.   
T Consensus         1 m~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---   77 (342)
T 1yfq_A            1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV---   77 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET---
T ss_pred             CcceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcC---
Confidence            44555667999999999999999999999999999999998776   3455668888999999999999 8888764   


Q ss_pred             CceeEEEEc-cCCceEEEeee--cccCEEEEEecCCCCeEEEecCCCcEEEeeCCC---------ceeeeeeeecC-cee
Q 021648           77 DESLRLLSL-HDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA---------EKCQGLLRVQG-RPA  143 (309)
Q Consensus        77 d~~i~~~d~-~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~---------~~~~~~~~~~~-~~~  143 (309)
                      |+.|++||+ ++++. ..+.+  |...|.+++|+| ++.|++++.|+.|++||+++         .++...+.... ...
T Consensus        78 dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  155 (342)
T 1yfq_A           78 QGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT  155 (342)
T ss_dssp             TSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred             CCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEE
Confidence            789999999 77754 77888  999999999999 99999999999999999887         65554444322 233


Q ss_pred             EEECCCCcEEEEEECCEEEEEECCC-CCcCCceEEEeCCCCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCC------
Q 021648          144 AAYDDQGLVFAVAFGGYIRMFDARK-YEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRG------  215 (309)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~------  215 (309)
                      +.+.+++ +++++.++.|++||++. .... . ......+...+.+++++| +++++++++.||.|++||....      
T Consensus       156 ~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~-~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~  232 (342)
T 1yfq_A          156 MDTNSSR-LIVGMNNSQVQWFRLPLCEDDN-G-TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS  232 (342)
T ss_dssp             EEECSSE-EEEEESTTEEEEEESSCCTTCC-C-EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred             EEecCCc-EEEEeCCCeEEEEECCcccccc-c-eeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence            4555555 77777899999999986 4321 1 122334556789999999 9999999999999999998776      


Q ss_pred             eEeEEeeecCC------CCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC-CCCCcEEEECCCeeEEEEc
Q 021648          216 TLLSTYNVKPV------SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTPGSLMFVTG  288 (309)
Q Consensus       216 ~~~~~~~~~~~------~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~~p~~~~l~s~  288 (309)
                      .....+..+..      +...+.+++|+|++++|++++.||.|++||+.+++.+..+..| ...|.+++  |++++|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~  310 (342)
T 1yfq_A          233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLA  310 (342)
T ss_dssp             TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEE
T ss_pred             ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEE
Confidence            66666654321      2337889999999999999999999999999999999999988 99999999  999999999


Q ss_pred             cceEE
Q 021648          289 SSELS  293 (309)
Q Consensus       289 ~~d~~  293 (309)
                      +.|..
T Consensus       311 s~Dg~  315 (342)
T 1yfq_A          311 TSDDT  315 (342)
T ss_dssp             EECTH
T ss_pred             ecCCc
Confidence            99865

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-40  Score=292.26  Aligned_cols=282  Identities=15%  Similarity=0.225  Sum_probs=229.5

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC----CceeeeeeccccceeEEEEecC-CCEEEEEcCCCCCceeEEE
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~s~~g~d~~i~~~   83 (309)
                      .|...|.+++|+|++++|++|+.|++|++||+.+    .+++..+..|...|..++|+|+ +..+++++.   |+.|++|
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~iw  141 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN---NGEIFIW  141 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS---SSCEEBC
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC---CCeEEEE
Confidence            5899999999999999999999999999999987    4578889999999999999998 777777754   8899999


Q ss_pred             EccCCc------eEE---EeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeec------C--ceeEE
Q 021648           84 SLHDNK------YLR---YFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQ------G--RPAAA  145 (309)
Q Consensus        84 d~~~~~------~~~---~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~------~--~~~~~  145 (309)
                      |+.+++      ...   .+.+|...|.+++|+|+ ++.|++++.|+.|++||++++++...+...      .  ...+.
T Consensus       142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~  221 (416)
T 2pm9_A          142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVE  221 (416)
T ss_dssp             BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEE
T ss_pred             ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEE
Confidence            998876      322   34689999999999998 789999999999999999998877666543      1  23456


Q ss_pred             ECCCC-cEEE-EEECC---EEEEEECCCCCcCCceEEEeC-CCCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEe
Q 021648          146 YDDQG-LVFA-VAFGG---YIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLL  218 (309)
Q Consensus       146 ~~~~~-~~~~-~~~~~---~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~~~~  218 (309)
                      +.+++ .+++ ++.++   .|++||++.....   ...+. ++...+.+++|+| +++++++++.||.|++||+.+++.+
T Consensus       222 ~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~  298 (416)
T 2pm9_A          222 WHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL  298 (416)
T ss_dssp             ECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE
T ss_pred             ECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc
Confidence            77765 4444 45566   9999999864321   22334 5667899999999 9999999999999999999999888


Q ss_pred             EEeeecCCCCCccceEEECCCC-CEEEEEcCCCcEEEEECCCCceEEEee------------------------------
Q 021648          219 STYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGKEVASWM------------------------------  267 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~sp~g-~~l~s~s~Dg~i~vwd~~~~~~~~~~~------------------------------  267 (309)
                      ..+..   |...+..++|+|++ ++|++++.|+.|++||+.+.+......                              
T Consensus       299 ~~~~~---~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (416)
T 2pm9_A          299 SQFPA---RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFH  375 (416)
T ss_dssp             EEEEC---SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSC
T ss_pred             eeecC---CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccccc
Confidence            87763   45678899999999 899999999999999998765432211                              


Q ss_pred             -----cCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          268 -----SFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       268 -----~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                           .|...+.+++|+|+|++|++++.|..+.+|++
T Consensus       376 ~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~  412 (416)
T 2pm9_A          376 LQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP  412 (416)
T ss_dssp             CCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred             ccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence                 15667789999999999999998844444443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.4e-39  Score=283.30  Aligned_cols=286  Identities=14%  Similarity=0.216  Sum_probs=227.5

Q ss_pred             ecCCCcceEEEEeCCC----CCEEEEeeCCCcEEEEEcCCCceeeeeeccc-----cceeEEEEecC----CCEEEEEcC
Q 021648            7 FRDYNGRISSMDFHKS----SSYLVTASDDESIRLYDVTAATCLKTINSKK-----YGVDLVCFTSH----PTTVIYSSK   73 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~----~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~-----~~v~~~~~~~~----~~~~~~~s~   73 (309)
                      ..+|+++|.+++|+|+    ...+++++.|+.|++||+.+++.++.+..+.     ..+..++|+++    +..+++++.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            4489999999999984    4566666677799999999888887776543     56999999998    446776654


Q ss_pred             CCCCceeEEEEccCCceEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeee---ec--CceeEEEC
Q 021648           74 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQ--GRPAAAYD  147 (309)
Q Consensus        74 ~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~---~~--~~~~~~~~  147 (309)
                         |+.|++||+.+++.+..+.+|...|.+++|+| +++.|++++.||+|++||+++++....+.   ..  ....+.+.
T Consensus        94 ---dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  170 (366)
T 3k26_A           94 ---RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD  170 (366)
T ss_dssp             ---TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred             ---CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence               88999999999999999999999999999999 89999999999999999999888776652   12  23345677


Q ss_pred             CCCcEEE-EEECCEEEEEECCCCCcCC------------------------ceEEEeCCCCCCCeEEEEccCCCEEEEEe
Q 021648          148 DQGLVFA-VAFGGYIRMFDARKYEKGP------------------------FDIFSVGGDISDANVVKFSNDGRLMLLTT  202 (309)
Q Consensus       148 ~~~~~~~-~~~~~~i~~~d~~~~~~~~------------------------~~~~~~~~~~~~~~~v~~s~dg~~l~~~~  202 (309)
                      +++..++ ++.|+.|++||++..+...                        .......++...+.+++|+  ++++++++
T Consensus       171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~  248 (366)
T 3k26_A          171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS  248 (366)
T ss_dssp             TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred             CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence            7665554 5568999999987532100                        0112233366789999998  78999999


Q ss_pred             CCCcEEEEECCCCeE--------------eEEeeecCCCCCccceEEECCC--CCEEEEEcCCCcEEEEECCCCce----
Q 021648          203 MEGHIHVLDSFRGTL--------------LSTYNVKPVSRNSTLEASFSPE--GMFVISGSGDGSVYAWSVRSGKE----  262 (309)
Q Consensus       203 ~dg~v~i~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~sp~--g~~l~s~s~Dg~i~vwd~~~~~~----  262 (309)
                      .|+.|++||+.++..              +..+.   .+...+..++|+|+  +++|++|+.||.|++||+.+++.    
T Consensus       249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  325 (366)
T 3k26_A          249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD---YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK  325 (366)
T ss_dssp             SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE---CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred             cCCEEEEEeCCCccccccccccCCcchheecccc---ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence            999999999877643              44443   34567888999999  99999999999999999998764    


Q ss_pred             EEEeecC--CCCCcEEEECCCeeEEEEccceEEEeeecCC
Q 021648          263 VASWMSF--DTEPPVIKWTPGSLMFVTGSSELSFWIPDLS  300 (309)
Q Consensus       263 ~~~~~~~--~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~  300 (309)
                      ...+..|  ...|.+++|+|++++|++++.|..+.+|++.
T Consensus       326 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          326 CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            3467777  7899999999999999999999777777653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=287.85  Aligned_cols=282  Identities=17%  Similarity=0.271  Sum_probs=216.1

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc-----------eeeeeeccc------------cceeEEEEecCC-
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----------CLKTINSKK------------YGVDLVCFTSHP-   65 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~-   65 (309)
                      |.+.|++++|+|+|++||+|+.|++|+|||+.+++           +...+.+|.            ..|..++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            67899999999999999999999999999999877           577888887            779999999998 


Q ss_pred             -CEEEEEcCCCCCceeEEEEccCCceE---------------------------------------EE-eeecccCEEEE
Q 021648           66 -TTVIYSSKNGWDESLRLLSLHDNKYL---------------------------------------RY-FKGHHDRVVSL  104 (309)
Q Consensus        66 -~~~~~~s~~g~d~~i~~~d~~~~~~~---------------------------------------~~-~~~h~~~v~~v  104 (309)
                       ..+++++.   |++|++||+.+++..                                       +. ..+|...|.++
T Consensus       107 ~~~l~s~s~---d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          107 AAQFLLSTN---DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             SSEEEEEEC---SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             cceEEEeCC---CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence             67777754   899999999764432                                       12 36899999999


Q ss_pred             EecCCCCeEEEecCCCcEEEeeCCC-ceeeeee-------eec--CceeEEECCCC-c-EEEEEECCEEEEEECCCCCcC
Q 021648          105 SLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLL-------RVQ--GRPAAAYDDQG-L-VFAVAFGGYIRMFDARKYEKG  172 (309)
Q Consensus       105 ~~~~~~~~l~s~s~Dg~v~~Wd~~~-~~~~~~~-------~~~--~~~~~~~~~~~-~-~~~~~~~~~i~~~d~~~~~~~  172 (309)
                      +|+|++++|++| .|++|++||+++ .++...+       ...  ....+.+.+++ . +++++.|+.|++||++.....
T Consensus       184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            999999999998 799999999984 4343322       111  13356777775 4 555556899999999875432


Q ss_pred             CceEEEeCCCCC------------CCeEEEEccCCCEEEEEeCCCcEEEEECCC-CeEeEEeeecCCCCC---------c
Q 021648          173 PFDIFSVGGDIS------------DANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRN---------S  230 (309)
Q Consensus       173 ~~~~~~~~~~~~------------~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~---------~  230 (309)
                      ......+..+..            .+.+++|+|+|++|++++. +.|++||+.+ +..+..+..+.....         .
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  341 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC  341 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred             cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence            111233444443            7999999999999999999 9999999987 777766654321111         1


Q ss_pred             ---cceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee---------------------------------cCCCCCc
Q 021648          231 ---TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM---------------------------------SFDTEPP  274 (309)
Q Consensus       231 ---~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~---------------------------------~~~~~v~  274 (309)
                         +..++|+|++++|++|+.||.|++||+.+++.+. +.                                 .++..+.
T Consensus       342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  420 (447)
T 3dw8_B          342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL  420 (447)
T ss_dssp             GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred             cccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence               2248999999999999999999999999887653 21                                 3356788


Q ss_pred             EEEECCCeeEEEEccce-EEEeee
Q 021648          275 VIKWTPGSLMFVTGSSE-LSFWIP  297 (309)
Q Consensus       275 ~l~~~p~~~~l~s~~~d-~~~~~~  297 (309)
                      +++|+|++++|++++.+ +++|..
T Consensus       421 ~~~~~p~~~~la~~~~~~~~~~~~  444 (447)
T 3dw8_B          421 HTAWHPKENIIAVATTNNLYIFQD  444 (447)
T ss_dssp             EEEECSSSSEEEEECSSCEEEEEC
T ss_pred             EEEECCCCCEEEEEecceeeeecc
Confidence            99999999999998876 677653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5e-39  Score=283.24  Aligned_cols=291  Identities=14%  Similarity=0.141  Sum_probs=233.9

Q ss_pred             EecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            6 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      .+..|.++|.+++|+|++++|++++.|++|++||+.+++  ++..+.+|...+..++|+|+++.+++++.   |+.|++|
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---dg~i~vw   79 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT---DRNAYVW   79 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET---TSCEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC---CCeEEEE
Confidence            456699999999999999999999999999999999887  88999999999999999999999988764   8899999


Q ss_pred             EccCCceEEE--eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee---eeeee---cCceeEEECCCCcEEEE
Q 021648           84 SLHDNKYLRY--FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ---GLLRV---QGRPAAAYDDQGLVFAV  155 (309)
Q Consensus        84 d~~~~~~~~~--~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~  155 (309)
                      |+++++....  +.+|...|.+++|+|++++|++++.|+.|++||++.....   ..+..   .......+.+++.++++
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  159 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  159 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence            9998875444  4679999999999999999999999999999998876521   11111   12335667777765555


Q ss_pred             -EECCEEEEEECCCCC--------------cCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEE
Q 021648          156 -AFGGYIRMFDARKYE--------------KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST  220 (309)
Q Consensus       156 -~~~~~i~~~d~~~~~--------------~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~  220 (309)
                       +.|+.|++||++...              .....+..+..+...+.+++|+|+++++++++.|+.|++||+.+++.+..
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  239 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT  239 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE
Confidence             468999999975211              01122445556777899999999999999999999999999999998887


Q ss_pred             eeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC--Cce--------------------------------E---
Q 021648          221 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS--GKE--------------------------------V---  263 (309)
Q Consensus       221 ~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~--~~~--------------------------------~---  263 (309)
                      +..   +...+..++|+|+++++++| .|+.|++|++.+  ++.                                .   
T Consensus       240 ~~~---~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (372)
T 1k8k_C          240 LAS---ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA  315 (372)
T ss_dssp             EEC---SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC------
T ss_pred             Ecc---CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCc
Confidence            763   45678899999999998888 899999999987  421                                0   


Q ss_pred             ---EEe-ecCCCCCcEEEEC-CCe---eEEEEccceEEEeeecCCCcc
Q 021648          264 ---ASW-MSFDTEPPVIKWT-PGS---LMFVTGSSELSFWIPDLSKLG  303 (309)
Q Consensus       264 ---~~~-~~~~~~v~~l~~~-p~~---~~l~s~~~d~~~~~~~~~~~~  303 (309)
                         ..+ .+|...|++++|+ +++   ++|++++.|..+.+|++..+.
T Consensus       316 ~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          316 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             ---CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             cccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence               223 3899999999976 566   999999999666666654443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5e-39  Score=290.73  Aligned_cols=292  Identities=15%  Similarity=0.170  Sum_probs=218.7

Q ss_pred             cceEecCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCcee--eeeeccccceeEEEEec-CCCEEEEEcCCCCCc
Q 021648            3 VGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDE   78 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~d~   78 (309)
                      +......|...|++|+|+| ++++||+|+.||+|+|||+.+++..  ..+.+|...|.+++|+| ++..+++++.   |+
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~---D~  187 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM---EG  187 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS---SS
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC---CC
Confidence            4556678999999999999 5679999999999999999876544  45668889999999998 5778887754   89


Q ss_pred             eeEEEEccCCceEEEeee--cccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCC-cEE
Q 021648           79 SLRLLSLHDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG-LVF  153 (309)
Q Consensus        79 ~i~~~d~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~  153 (309)
                      +|++||++++........  +...+.+++|+|++++|++|+.||+|++||++... ...+..+.  ...+.+.+.+ .++
T Consensus       188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~  266 (435)
T 4e54_B          188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWFL  266 (435)
T ss_dssp             CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCCSBCCSSCEEEEEECTTCSSEE
T ss_pred             EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEEEecccceEEeeeecCCCceEE
Confidence            999999987654333333  33457889999999999999999999999986543 33333222  2345666654 355


Q ss_pred             E-EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCC---CC
Q 021648          154 A-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS---RN  229 (309)
Q Consensus       154 ~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~---~~  229 (309)
                      + ++.|+.|++||++..+... ......+|...|.+++|+|+|++|++++.||.|++||+.++.....+..+...   ..
T Consensus       267 ~s~s~d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~  345 (435)
T 4e54_B          267 ATASVDQTVKIWDLRQVRGKA-SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHL  345 (435)
T ss_dssp             EEEETTSBCCEEETTTCCSSS-CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSS
T ss_pred             EEecCcceeeEEecccccccc-eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccc
Confidence            4 5568999999998754321 12233456678999999999999999999999999999988776655432211   12


Q ss_pred             ccceEEECCCCCEEEEEc------------CCCcEEEEECCCCceEEEee-cCCCCCcEE-EECCCeeEEEEccce-EEE
Q 021648          230 STLEASFSPEGMFVISGS------------GDGSVYAWSVRSGKEVASWM-SFDTEPPVI-KWTPGSLMFVTGSSE-LSF  294 (309)
Q Consensus       230 ~~~~~~~sp~g~~l~s~s------------~Dg~i~vwd~~~~~~~~~~~-~~~~~v~~l-~~~p~~~~l~s~~~d-~~~  294 (309)
                      .+..+.|+|++..+++++            .++.|++||+.+++.+..+. +|...|.++ +|+|++++|++|+.+ +++
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~i  425 (435)
T 4e54_B          346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILI  425 (435)
T ss_dssp             CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEE
T ss_pred             eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEE
Confidence            234567888777777664            33589999999999888764 688888887 699999999998744 555


Q ss_pred             eeecC
Q 021648          295 WIPDL  299 (309)
Q Consensus       295 ~~~~~  299 (309)
                      |.++-
T Consensus       426 W~~~~  430 (435)
T 4e54_B          426 WSQQE  430 (435)
T ss_dssp             CCCC-
T ss_pred             EECCc
Confidence            55543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.5e-39  Score=282.85  Aligned_cols=247  Identities=16%  Similarity=0.241  Sum_probs=195.3

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeee----eeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT----INSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      ....+|.+.|.+++|+|++. +++++.|++|+|||+.++++...    ..+|...|.+++|+|+++.+++++.   |++|
T Consensus        88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~---dg~v  163 (357)
T 4g56_B           88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK---DFSV  163 (357)
T ss_dssp             SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET---TSCE
T ss_pred             cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC---CCeE
Confidence            44567999999999999875 55788999999999998876533    3467888999999999999998864   8899


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeeecC----ceeEEECCC-CcEEE
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQG----RPAAAYDDQ-GLVFA  154 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~  154 (309)
                      ++||+++++.+..+.+|.+.|++++|++++. .+++++.|++|++||++++++...+....    ...+.+.|+ +.+++
T Consensus       164 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence            9999999999999999999999999999875 78999999999999999887765543322    234566654 45565


Q ss_pred             E-EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccc
Q 021648          155 V-AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  232 (309)
Q Consensus       155 ~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  232 (309)
                      + +.|+.|++||+++.+.    ...+.++...+.+++|+|++ ++|++++.|++|+|||+.+++++..+    .|...|.
T Consensus       244 ~g~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~----~H~~~V~  315 (357)
T 4g56_B          244 CGDETGNVSLVNIKNPDS----AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL----SHRDFVT  315 (357)
T ss_dssp             EEESSSCEEEEESSCGGG----CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC----CCSSCEE
T ss_pred             EeecccceeEEECCCCcE----eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC----CCCCCEE
Confidence            5 4689999999986432    34566777889999999997 57899999999999999999877654    3667899


Q ss_pred             eEEECC-CCCEEEEEcCCCcEEEEECCCCceE
Q 021648          233 EASFSP-EGMFVISGSGDGSVYAWSVRSGKEV  263 (309)
Q Consensus       233 ~~~~sp-~g~~l~s~s~Dg~i~vwd~~~~~~~  263 (309)
                      +++|+| |+++|+|||.||+|++|++.+....
T Consensus       316 ~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          316 GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             EEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred             EEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence            999999 8999999999999999999765443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.1e-38  Score=303.63  Aligned_cols=287  Identities=17%  Similarity=0.253  Sum_probs=243.1

Q ss_pred             CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      +++.++|.+|++.|.+++|+|++++||+|+.|++|+|||+.++++++.+..|..+|..++|+|+++.+++++.   |+.|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i   79 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD---DFRI   79 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET---TSEE
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC---CCeE
Confidence            4677899999999999999999999999999999999999999999999999999999999999999998865   8899


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc-eeeeeeeecC--ceeEEECC-CCc-EEEE
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLLRVQG--RPAAAYDD-QGL-VFAV  155 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~-~~~~~~~~~~--~~~~~~~~-~~~-~~~~  155 (309)
                      ++||+.+++.+..+.+|.+.|++++|+|++++|++++.||+|++||++++ .....+..+.  .....+.+ ++. ++++
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  159 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999876 4444443222  23456666 554 5555


Q ss_pred             EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc--CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648          156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  233 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~  233 (309)
                      +.|+.|++||++.... .  ......+...+..++++|  ++.++++++.||.|++||..++..+..+..   +...+..
T Consensus       160 ~~dg~v~vwd~~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~v~~  233 (814)
T 3mkq_A          160 CLDRTVKVWSLGQSTP-N--FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---HMSNVSF  233 (814)
T ss_dssp             ETTSEEEEEETTCSSC-S--EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC---CSSCEEE
T ss_pred             eCCCeEEEEECCCCcc-e--eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC---CCCCEEE
Confidence            5689999999875432 1  112223346789999999  999999999999999999999988877653   4567889


Q ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCee--EEEEccce-EEEee
Q 021648          234 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTGSSE-LSFWI  296 (309)
Q Consensus       234 ~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~s~~~d-~~~~~  296 (309)
                      ++|+|+|+++++++.||.|++||+.+++.+..+..|...+.+++|+|+++  ++++++.+ ..+|.
T Consensus       234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (814)
T 3mkq_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS  299 (814)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999986  45555543 44443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3e-38  Score=279.41  Aligned_cols=284  Identities=10%  Similarity=0.079  Sum_probs=213.2

Q ss_pred             cceEEEEeCCCCCEEEEeeCCC-------cEEEEEcCCCcee----------eeeeccccceeEEEEecCCCEEEEEcCC
Q 021648           12 GRISSMDFHKSSSYLVTASDDE-------SIRLYDVTAATCL----------KTINSKKYGVDLVCFTSHPTTVIYSSKN   74 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~-------~v~iWd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~~s~~   74 (309)
                      -+|.+++|+||+++||+||.|.       .|++|++..+...          ..+..+...+.+++  ++++.++++...
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~--~~~~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAID--ASKGIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEE--EETTEEEEECCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEE--eCCCEEEEEECC
Confidence            4899999999999999998654       5999999754321          13445555565554  456667665422


Q ss_pred             --------CCCceeEEEEccCCce-EEE--------eeecccCEEEEEecCCCCeEE--EecCCCcEEEeeCCCceeeee
Q 021648           75 --------GWDESLRLLSLHDNKY-LRY--------FKGHHDRVVSLSLCSSKDCFI--SGSLDRTVLLWDQRAEKCQGL  135 (309)
Q Consensus        75 --------g~d~~i~~~d~~~~~~-~~~--------~~~h~~~v~~v~~~~~~~~l~--s~s~Dg~v~~Wd~~~~~~~~~  135 (309)
                              +.|+++|+|++...+. +..        ...+...++.++|+|||++++  +++.|++|++||+++.++...
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~  172 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE  172 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence                    2478999999876542 211        123455699999999999876  555899999999999888776


Q ss_pred             eeecC-ceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC----cEEEE
Q 021648          136 LRVQG-RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG----HIHVL  210 (309)
Q Consensus       136 ~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg----~v~i~  210 (309)
                      +.... ...+.++|++.+++.+.++.+.+|+......  ........+...+.+++|+|+|+++++++.|+    .+++|
T Consensus       173 ~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          173 IETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSC--IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             EECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCE--EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             eCCCCceEEEEEccCCceEEeccceeEEEEEeccCcc--eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence            65433 3457889999999988888888888765321  11223344556789999999999999999887    68889


Q ss_pred             ECCCCeEeEE-eeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-ecCCCCCcEEEECCCeeEEEEc
Q 021648          211 DSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTG  288 (309)
Q Consensus       211 d~~~~~~~~~-~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~  288 (309)
                      |......... ......+...|.+++|||||++||+|+.|++|+|||+.+++++.++ .+|...|++|+|+||+++|+||
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~  330 (365)
T 4h5i_A          251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV  330 (365)
T ss_dssp             EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred             ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence            8876543221 1111235577889999999999999999999999999999999885 6899999999999999999999


Q ss_pred             cceEEEeeecC
Q 021648          289 SSELSFWIPDL  299 (309)
Q Consensus       289 ~~d~~~~~~~~  299 (309)
                      +.|..+.+|++
T Consensus       331 S~D~tvrvw~i  341 (365)
T 4h5i_A          331 SAANTIHIIKL  341 (365)
T ss_dssp             ETTSEEEEEEC
T ss_pred             eCCCeEEEEEc
Confidence            99944444443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.4e-38  Score=273.26  Aligned_cols=248  Identities=17%  Similarity=0.282  Sum_probs=204.6

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ..++|++|...|.+++|+|++++|+||+.|++|||||+.++++++.+.+|...|..++|++++..+++++.   |++|++
T Consensus        57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---D~~i~v  133 (319)
T 3frx_A           57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR---DKTIKV  133 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET---TSCEEE
T ss_pred             cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC---CCeEEE
Confidence            35678999999999999999999999999999999999999999999999999999999999999998875   889999


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCC------CCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEE
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSS------KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFA  154 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~------~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  154 (309)
                      ||++ ++.+..+.+|.+.|.++.++|.      +..|++++.|++|++||+++.+....+..+.  ...+.+++++.+++
T Consensus       134 wd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~  212 (319)
T 3frx_A          134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIA  212 (319)
T ss_dssp             EETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEE
T ss_pred             EECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEE
Confidence            9996 4678889999999999999984      4489999999999999999887665543322  34567788776655


Q ss_pred             E-EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeec-----CCCC
Q 021648          155 V-AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-----PVSR  228 (309)
Q Consensus       155 ~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-----~~~~  228 (309)
                      + +.|+.|++||++..+    .+..+.. ...+.+++|+|++.++++++.+ .+++|+...+..+..+...     ..+.
T Consensus       213 s~~~dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~  286 (319)
T 3frx_A          213 SAGKDGEIMLWNLAAKK----AMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAE  286 (319)
T ss_dssp             EEETTCEEEEEETTTTE----EEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGC
T ss_pred             EEeCCCeEEEEECCCCc----EEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcC
Confidence            5 568999999987643    1233332 3578999999999999888755 5999999887766655321     1123


Q ss_pred             CccceEEECCCCCEEEEEcCCCcEEEEECCCC
Q 021648          229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~  260 (309)
                      ..+.+++|+|||++|++|+.|+.|++||+.++
T Consensus       287 ~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          287 PHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             cceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            45778999999999999999999999999764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-39  Score=288.95  Aligned_cols=286  Identities=14%  Similarity=0.202  Sum_probs=224.1

Q ss_pred             ccceEe-cCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCC---Cceee-eee-ccccceeEEEEecCCCEEEEEcCC
Q 021648            2 EVGMSF-RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTA---ATCLK-TIN-SKKYGVDLVCFTSHPTTVIYSSKN   74 (309)
Q Consensus         2 ~~~~~~-~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~---~~~~~-~~~-~~~~~v~~~~~~~~~~~~~~~s~~   74 (309)
                      +++.+| .+|.+.|++++|+| ++++||||+.|++|+|||+.+   +.+.+ .+. .|...|.+++|++++..+++++. 
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-  131 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSK-  131 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEET-
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeC-
Confidence            456788 89999999999999 999999999999999999976   44322 222 47888999999999999988865 


Q ss_pred             CCCceeEEEEcc---CCceEEEeeec------------ccCEEEEE--ecCCCCeEEEecCCCcEEEeeCCCceeeeeee
Q 021648           75 GWDESLRLLSLH---DNKYLRYFKGH------------HDRVVSLS--LCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR  137 (309)
Q Consensus        75 g~d~~i~~~d~~---~~~~~~~~~~h------------~~~v~~v~--~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~  137 (309)
                        |++|++||++   +++.+..+.+|            ...+.++.  ++++++.|++++.|++|++||++++++...+.
T Consensus       132 --dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  209 (437)
T 3gre_A          132 --DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE  209 (437)
T ss_dssp             --TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             --CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence              8899999995   66666655544            34455555  44678899999999999999999988877765


Q ss_pred             e----cCceeEEECCCCcEEE-EEECCEEEEEECCCCCcCCceEEEeC-CCCCCCeEEEE----ccCCCEEEEEeCCCcE
Q 021648          138 V----QGRPAAAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVG-GDISDANVVKF----SNDGRLMLLTTMEGHI  207 (309)
Q Consensus       138 ~----~~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~v~~----s~dg~~l~~~~~dg~v  207 (309)
                      .    .....+.+++++.+++ ++.|+.|++||++..+    .+..+. .+...+.++++    +|++.++++++.||.|
T Consensus       210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i  285 (437)
T 3gre_A          210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV----LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL  285 (437)
T ss_dssp             CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE----EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred             cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc----EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence            4    1234566777776555 4568999999998632    122322 34457888854    5678899999999999


Q ss_pred             EEEECCCCeEeEEeeecC-----------------------CCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 021648          208 HVLDSFRGTLLSTYNVKP-----------------------VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA  264 (309)
Q Consensus       208 ~i~d~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~  264 (309)
                      ++||+.+++.+..+..+.                       .+...+.+++|+ ++++|++|+.|+.|++||+.+++.+.
T Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~  364 (437)
T 3gre_A          286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK  364 (437)
T ss_dssp             EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred             EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence            999999999888776321                       144567889999 78999999999999999999988777


Q ss_pred             Eeec-------------------------------------CCCCCcEEEECCC--eeEEEEccce--EEEe
Q 021648          265 SWMS-------------------------------------FDTEPPVIKWTPG--SLMFVTGSSE--LSFW  295 (309)
Q Consensus       265 ~~~~-------------------------------------~~~~v~~l~~~p~--~~~l~s~~~d--~~~~  295 (309)
                      .+.+                                     |...|++++|+++  +.+|++|+.|  +++|
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw  436 (437)
T 3gre_A          365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF  436 (437)
T ss_dssp             EEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred             EEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence            6655                                     8889999999998  8899999998  5555

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.4e-38  Score=283.85  Aligned_cols=281  Identities=13%  Similarity=0.149  Sum_probs=222.2

Q ss_pred             ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc
Q 021648            7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   86 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~   86 (309)
                      +..| ..+....|+|++++|++|+.|++|++||+.++++.+.+..|...|..++|+|+++.+++++.   |++|++||+.
T Consensus        94 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---d~~i~iwd~~  169 (420)
T 3vl1_A           94 LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQ---DMQLKIWSVK  169 (420)
T ss_dssp             SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEET---TSEEEEEETT
T ss_pred             EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeC---CCeEEEEeCC
Confidence            3444 44555678999999999999999999999999999988999999999999999998888764   8899999999


Q ss_pred             CCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC-----c--------------------
Q 021648           87 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-----R--------------------  141 (309)
Q Consensus        87 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-----~--------------------  141 (309)
                      +++.+..+.+|.+.|.+++|+|+++.|++++.|++|++||++++++...+....     .                    
T Consensus       170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  249 (420)
T 3vl1_A          170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK  249 (420)
T ss_dssp             TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred             CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence            999999999999999999999999999999999999999999888776654311     0                    


Q ss_pred             -eeEEECCCCcEEEE-EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCC-EEEEEeCCCcEEEEECCCCeE-
Q 021648          142 -PAAAYDDQGLVFAV-AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTL-  217 (309)
Q Consensus       142 -~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~dg~v~i~d~~~~~~-  217 (309)
                       ....+++++.++++ +.++.|++||++..+.   .......+...+.+++|+|+++ ++++++.||.|++||+.++.. 
T Consensus       250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~  326 (420)
T 3vl1_A          250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ---TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP  326 (420)
T ss_dssp             CCTTCSSCTTEEEEEEETTSCEEEEETTTCCE---EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC
T ss_pred             ccceEEcCCCCEEEEEcCCCeEEEEECCCCce---eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc
Confidence             11223456655554 4689999999976432   1222334567899999999999 999999999999999988743 


Q ss_pred             eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc---------eEEEeecCCCCCcEEEECCCee----E
Q 021648          218 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK---------EVASWMSFDTEPPVIKWTPGSL----M  284 (309)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~---------~~~~~~~~~~~v~~l~~~p~~~----~  284 (309)
                      +..+..+  +...+..+ ++|++++|++++.|+.|++||+.+.+         ....+..|...+.+++|+|+++    +
T Consensus       327 ~~~~~~~--~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l  403 (420)
T 3vl1_A          327 VGEFLIN--EGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEV  403 (420)
T ss_dssp             SEEEEES--TTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEE
T ss_pred             hhhhhcc--CCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceE
Confidence            5555432  33455555 55788999999999999999997732         2234567888999999999988    5


Q ss_pred             EEEccce-EEEeee
Q 021648          285 FVTGSSE-LSFWIP  297 (309)
Q Consensus       285 l~s~~~d-~~~~~~  297 (309)
                      +++|+.+ +.+|..
T Consensus       404 ~a~g~~g~~~~~~~  417 (420)
T 3vl1_A          404 LEVGKNNFCALYNL  417 (420)
T ss_dssp             EEEETTTEEEEEES
T ss_pred             EEEcCCceEEEEec
Confidence            5555543 666654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.1e-37  Score=268.99  Aligned_cols=247  Identities=13%  Similarity=0.122  Sum_probs=208.3

Q ss_pred             ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEE
Q 021648           44 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL  123 (309)
Q Consensus        44 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~  123 (309)
                      +..+++.+|...|..++|+|+++.+++++.   |++|++||+++++.+..+.+|...|.++.|+|++++|++|+.|++|+
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~---dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~   80 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLY---SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEET---TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcC---CCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence            456788999999999999999999998864   89999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCceeeeeeeecC--ceeEEECCCCcEE-EEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc-CCCEEE
Q 021648          124 LWDQRAEKCQGLLRVQG--RPAAAYDDQGLVF-AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLML  199 (309)
Q Consensus       124 ~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~  199 (309)
                      +||++++++...+..+.  ...+.+.+++.++ +++.|+.|++||++...   .....+.++...+.+++|+| ++..++
T Consensus        81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~~l~  157 (304)
T 2ynn_A           81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---ALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (304)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---EEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred             EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---chhhhhcccCCcEEEEEECCCCCCEEE
Confidence            99999988776665433  3356677776554 45568999999987532   22345667888899999999 689999


Q ss_pred             EEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC--CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEE
Q 021648          200 LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP--EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK  277 (309)
Q Consensus       200 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp--~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~  277 (309)
                      +++.|++|++||+.++.....+..  .+...+..++|+|  ++++|++|+.|++|++||+++++++.++.+|...|.+++
T Consensus       158 sgs~D~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~  235 (304)
T 2ynn_A          158 SGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV  235 (304)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEEC--CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEeCCCeEEEEECCCCCccceecc--CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE
Confidence            999999999999987766554432  2345667788876  788999999999999999999999999999999999999


Q ss_pred             ECCCeeEEEEccce--EEEeeec
Q 021648          278 WTPGSLMFVTGSSE--LSFWIPD  298 (309)
Q Consensus       278 ~~p~~~~l~s~~~d--~~~~~~~  298 (309)
                      |+|++++|++|+.|  +++|...
T Consensus       236 ~~p~~~~l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          236 FHPTLPIIISGSEDGTLKIWNSS  258 (304)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETT
T ss_pred             ECCCCCEEEEEcCCCeEEEEECC
Confidence            99999999999998  5666543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.4e-38  Score=294.29  Aligned_cols=289  Identities=16%  Similarity=0.205  Sum_probs=231.4

Q ss_pred             cceEecCCCcceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeecccc---ceeEEEEecC-CCEEEEEcCCCCC
Q 021648            3 VGMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKY---GVDLVCFTSH-PTTVIYSSKNGWD   77 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~~~s~~g~d   77 (309)
                      ....+.+|.+.|.+++|+|+++ ++++++.|++|++||+.+++++..+..|..   .+..++|+|+ ++.+++++.   |
T Consensus       152 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d  228 (615)
T 1pgu_A          152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS---D  228 (615)
T ss_dssp             EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---T
T ss_pred             cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---C
Confidence            4567889999999999999998 899999999999999999999999999988   8999999999 888888764   7


Q ss_pred             ceeEEEEccCCceEEEe-e---ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC------ceeEE--
Q 021648           78 ESLRLLSLHDNKYLRYF-K---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG------RPAAA--  145 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~~~-~---~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~------~~~~~--  145 (309)
                      +.|++||+.+++.+..+ .   +|...|.+++|+ ++++|++++.|+.|++||++++++...+....      .....  
T Consensus       229 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (615)
T 1pgu_A          229 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT  307 (615)
T ss_dssp             CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred             CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC
Confidence            89999999999999998 6   899999999999 99999999999999999998776554433220      00000  


Q ss_pred             ------------------------------------------------------------------------ECCCCcEE
Q 021648          146 ------------------------------------------------------------------------YDDQGLVF  153 (309)
Q Consensus       146 ------------------------------------------------------------------------~~~~~~~~  153 (309)
                                                                                              +.+...++
T Consensus       308 ~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~  387 (615)
T 1pgu_A          308 GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYS  387 (615)
T ss_dssp             ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCE
T ss_pred             CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEE
Confidence                                                                                    11122333


Q ss_pred             EEEECCEEEEEECCCCC-------------------------------------------------------------cC
Q 021648          154 AVAFGGYIRMFDARKYE-------------------------------------------------------------KG  172 (309)
Q Consensus       154 ~~~~~~~i~~~d~~~~~-------------------------------------------------------------~~  172 (309)
                      +++.++.+++||++..+                                                             .+
T Consensus       388 ~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~  467 (615)
T 1pgu_A          388 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN  467 (615)
T ss_dssp             EEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred             EEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCC
Confidence            33334444444432100                                                             01


Q ss_pred             CceE----------EEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC----
Q 021648          173 PFDI----------FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP----  238 (309)
Q Consensus       173 ~~~~----------~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp----  238 (309)
                      .+.+          ....++...+.+++|+|+|++|++++.||.|++||+.+++.+..+..  .|...+.+++|+|    
T Consensus       468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~  545 (615)
T 1pgu_A          468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA--FRTSKINAISWKPAEKG  545 (615)
T ss_dssp             CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC--CCSSCEEEEEECCCC--
T ss_pred             eEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec--CCCCceeEEEEcCcccc
Confidence            1111          22344567889999999999999999999999999999988876542  2567899999999    


Q ss_pred             ------CCCEEEEEcCCCcEEEEECCCC-ceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeec
Q 021648          239 ------EGMFVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  298 (309)
Q Consensus       239 ------~g~~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~  298 (309)
                            ++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|+++ |++++.|  +++|..+
T Consensus       546 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          546 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             ----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred             ccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence                  9999999999999999999997 78888999999999999999999 9999988  5555443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-39  Score=288.54  Aligned_cols=291  Identities=11%  Similarity=0.087  Sum_probs=217.9

Q ss_pred             CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC--ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCc
Q 021648            1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE   78 (309)
Q Consensus         1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~   78 (309)
                      |.....++.|.++|++++|+|++++||+|+.|++|+|||+.++  ++++.+.+|...|..++|+|+++.+++++.   |+
T Consensus         1 m~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---d~   77 (377)
T 3dwl_C            1 MATSQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ---DR   77 (377)
T ss_dssp             -CCEEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET---TS
T ss_pred             CCcceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC---CC
Confidence            4455667778899999999999999999999999999999988  788999999999999999999999988874   88


Q ss_pred             eeEEEEccCCc---eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee---eeeeee-c--CceeEEECCC
Q 021648           79 SLRLLSLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC---QGLLRV-Q--GRPAAAYDDQ  149 (309)
Q Consensus        79 ~i~~~d~~~~~---~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~---~~~~~~-~--~~~~~~~~~~  149 (309)
                      +|++||+.+++   ....+.+|...|.+++|+|++++|++++.|++|++||+++++.   ...+.. +  ......+.++
T Consensus        78 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  157 (377)
T 3dwl_C           78 NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN  157 (377)
T ss_dssp             SEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred             eEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence            99999999877   6778889999999999999999999999999999999988763   333332 1  2334667777


Q ss_pred             CcEEE-EEECCEEEEEECCCCCcC--------------CceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 021648          150 GLVFA-VAFGGYIRMFDARKYEKG--------------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  214 (309)
Q Consensus       150 ~~~~~-~~~~~~i~~~d~~~~~~~--------------~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~  214 (309)
                      +.+++ ++.|+.|++||++.....              ...+..+ ++...+.+++|+|+|++|++++.||.|++||+.+
T Consensus       158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred             CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            76555 456899999998532100              0112223 6677899999999999999999999999999988


Q ss_pred             CeE----eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc-e--------------------------E
Q 021648          215 GTL----LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK-E--------------------------V  263 (309)
Q Consensus       215 ~~~----~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~-~--------------------------~  263 (309)
                      ++.    +..+.   .+...+..++|+|+|++|++|+.|+.+ +|+..... .                          .
T Consensus       237 ~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (377)
T 3dwl_C          237 PEQPPRALITVK---LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEE  312 (377)
T ss_dssp             TTSCEEECCCEE---CSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-
T ss_pred             CCCcceeeEeec---CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccc
Confidence            876    44443   355678899999999999999877755 67664211 0                          0


Q ss_pred             ---------EEe----------------ecCCCCCcEEEECCCe----eEEEEccceEEEeeecC
Q 021648          264 ---------ASW----------------MSFDTEPPVIKWTPGS----LMFVTGSSELSFWIPDL  299 (309)
Q Consensus       264 ---------~~~----------------~~~~~~v~~l~~~p~~----~~l~s~~~d~~~~~~~~  299 (309)
                               ..+                ..|...|+++++.+..    ..|+|++.|..+.+|++
T Consensus       313 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          313 GPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                     001                1288899999977654    26999999977666653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-38  Score=280.46  Aligned_cols=277  Identities=13%  Similarity=0.173  Sum_probs=231.9

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   89 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~   89 (309)
                      |.+.|.+++|+|++++|++|+.|++|++|| .+++++..+..|...+..++|+|++..+++++.   |+.+++||+.+++
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~  182 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV---ENVTILWNVISGT  182 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEET---TCCEEEEETTTTE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEec---CCeEEEEECCCCc
Confidence            788999999999999999999999999999 678889999999999999999999999988764   7899999999999


Q ss_pred             eEEEeeecccC---------------EEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcE
Q 021648           90 YLRYFKGHHDR---------------VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLV  152 (309)
Q Consensus        90 ~~~~~~~h~~~---------------v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~  152 (309)
                      .+..+..|...               +.++.|++++ .+++++.|+.|++||+++++....+....  .....+.+++.+
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  261 (425)
T 1r5m_A          183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL  261 (425)
T ss_dssp             EEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTE
T ss_pred             EEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCE
Confidence            99999888877               9999999875 68899999999999999877665554322  234566666655


Q ss_pred             EEE-EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCcc
Q 021648          153 FAV-AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  231 (309)
Q Consensus       153 ~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  231 (309)
                      +++ +.++.|++||++..+.    ...+..+...+.+++++|++ .+++++.|+.|++||+.+++.+..+..   +...+
T Consensus       262 l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i  333 (425)
T 1r5m_A          262 LLSASDDGTLRIWHGGNGNS----QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV---DGVPI  333 (425)
T ss_dssp             EEEEETTSCEEEECSSSBSC----SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC---TTCCE
T ss_pred             EEEEcCCCEEEEEECCCCcc----ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc---CCccE
Confidence            554 5589999999876432    23445566789999999999 999999999999999999998877663   45678


Q ss_pred             ceEEECCCCCEEEEEcCCCcEEEEECCCCc--------------------eEEEeecCCC--CCcEEEECCCeeEEEEcc
Q 021648          232 LEASFSPEGMFVISGSGDGSVYAWSVRSGK--------------------EVASWMSFDT--EPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       232 ~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~--------------------~~~~~~~~~~--~v~~l~~~p~~~~l~s~~  289 (309)
                      ..++|+|++++|++++.||.|++||+.+++                    .+..+..|..  .|.+++|+|++++|++++
T Consensus       334 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  413 (425)
T 1r5m_A          334 FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY  413 (425)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe
Confidence            899999999999999999999999999888                    7888999976  999999999999999999


Q ss_pred             ceEEEeeecC
Q 021648          290 SELSFWIPDL  299 (309)
Q Consensus       290 ~d~~~~~~~~  299 (309)
                      .|..+.+|++
T Consensus       414 ~dg~i~iw~~  423 (425)
T 1r5m_A          414 SLQEGSVVAI  423 (425)
T ss_dssp             SSSCCEEEEC
T ss_pred             cCceEEEEee
Confidence            8854444443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.6e-37  Score=278.14  Aligned_cols=276  Identities=16%  Similarity=0.203  Sum_probs=222.0

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee--ccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   90 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~   90 (309)
                      ..+.|+||++ ++||+| .|++|+|||+.+|++++.+.  .|...|.+++|+|+++.+++++.   |++|++||+++++.
T Consensus       107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~---Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS---SAEVQLWDVQQQKR  181 (420)
T ss_dssp             TCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEE
T ss_pred             cceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC---CCeEEEEEcCCCcE
Confidence            3567999985 577766 59999999999999988765  55667999999999999998875   88999999999999


Q ss_pred             EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee-eeeeeec--CceeEEECCCCcEEE-EEECCEEEEEEC
Q 021648           91 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQ--GRPAAAYDDQGLVFA-VAFGGYIRMFDA  166 (309)
Q Consensus        91 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~i~~~d~  166 (309)
                      +..+.+|...+.++.++  ++.|++|+.|+.+++||.+.... ...+..+  ......+.+.+..++ ++.|+.+++||.
T Consensus       182 ~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~  259 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS  259 (420)
T ss_dssp             EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEee
Confidence            99999999999988774  57999999999999999876443 2233222  223445666665555 456899999998


Q ss_pred             CCCCcCCceEEEeCCCCCCCeEEEEccCCC-EEEE--EeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEE
Q 021648          167 RKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLL--TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV  243 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l  243 (309)
                      +..+.....+.....+...+.+++++|++. ++++  ++.|++|++||+.++..+..+..    ...+..+.|+|+++.+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~----~~~v~~~~~~~~~~~l  335 (420)
T 4gga_A          260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA----HSQVCSILWSPHYKEL  335 (420)
T ss_dssp             SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC----SSCEEEEEEETTTTEE
T ss_pred             ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc----ccceeeeeecCCCCeE
Confidence            876544444455566777899999999764 4444  34799999999999998887653    3457789999999999


Q ss_pred             EEEc--CCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          244 ISGS--GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       244 ~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      ++++  .|+.|+|||+.+++++.++.+|.+.|.+++|+|++++|+||+.|..+.+|++
T Consensus       336 v~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          336 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             EEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             EEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            8865  7999999999999999999999999999999999999999999844444443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2e-37  Score=273.02  Aligned_cols=246  Identities=23%  Similarity=0.342  Sum_probs=205.9

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC------ceeeeeeccccceeEEEEecCCCEEEEEcCCCC
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   76 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   76 (309)
                      ....+..|...|.+++|+|+|.+|++|+.|+++++|++...      .....+..|...+..++|++++..+++++.   
T Consensus        98 ~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~---  174 (354)
T 2pbi_B           98 KEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG---  174 (354)
T ss_dssp             EEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET---
T ss_pred             cceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeC---
Confidence            45567789999999999999999999999999999998643      345667788889999999999999998864   


Q ss_pred             CceeEEEEccCCceEEEeeecccCEEEEEecC--CCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcE
Q 021648           77 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLV  152 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~  152 (309)
                      |++|++||+++++.+..+.+|...|.+++|+|  +++.|++|+.||+|++||++++++...+..+.  ...+.+.+++.+
T Consensus       175 D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~  254 (354)
T 2pbi_B          175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA  254 (354)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE
T ss_pred             CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCE
Confidence            89999999999999999999999999999987  46899999999999999999998877664432  345677777665


Q ss_pred             EE-EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCcc
Q 021648          153 FA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  231 (309)
Q Consensus       153 ~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  231 (309)
                      ++ ++.|+.|++||++...  ....+........+.+++|+|+|+++++++.|++|++||+.+++.+..+.   .|...+
T Consensus       255 l~s~s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~---~h~~~v  329 (354)
T 2pbi_B          255 FASGSDDATCRLYDLRADR--EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF---GHENRV  329 (354)
T ss_dssp             EEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC---CCSSCE
T ss_pred             EEEEeCCCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE---CCCCcE
Confidence            55 4568999999998642  12222222233467899999999999999999999999999998877654   466789


Q ss_pred             ceEEECCCCCEEEEEcCCCcEEEEE
Q 021648          232 LEASFSPEGMFVISGSGDGSVYAWS  256 (309)
Q Consensus       232 ~~~~~sp~g~~l~s~s~Dg~i~vwd  256 (309)
                      .+++|+|||++|++|+.|++|++|+
T Consensus       330 ~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          330 STLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999999999999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.5e-37  Score=279.48  Aligned_cols=279  Identities=18%  Similarity=0.337  Sum_probs=226.7

Q ss_pred             ceEecCCCcce-EEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            4 GMSFRDYNGRI-SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         4 ~~~~~~h~~~V-~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ..+|.+|.+.| .++.+  ++++|+||+.|++|++||+.+++++..+.+|...|..++|++++ .+++++.   |++|++
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~---dg~i~v  187 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGST---DRTVRV  187 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEET---TSCEEE
T ss_pred             eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeC---CCCEEE
Confidence            45789999885 66666  56799999999999999999999999999999999999999877 6666654   889999


Q ss_pred             EEccCCceEEEeeecccCEEEEEec--CCCCeEEEecCCCcEEEeeCCCceeeee-----------------------ee
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLC--SSKDCFISGSLDRTVLLWDQRAEKCQGL-----------------------LR  137 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~--~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~-----------------------~~  137 (309)
                      ||+++++.+..+.+|.+.|.+++|+  +++++|++++.|++|++||+++......                       +.
T Consensus       188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (464)
T 3v7d_B          188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  267 (464)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred             EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence            9999999999999999999999998  5778999999999999999987653221                       11


Q ss_pred             ecCceeEEECCCC-cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe
Q 021648          138 VQGRPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  216 (309)
Q Consensus       138 ~~~~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~  216 (309)
                      ..........+.+ .+++++.|+.|++||++..+    .+..+.++...+.+++++|+++++++++.||.|++||+.+++
T Consensus       268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK----CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  343 (464)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc----EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence            1111122223333 45556678999999997533    245566777889999999999999999999999999999999


Q ss_pred             EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce-EEEe
Q 021648          217 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE-LSFW  295 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d-~~~~  295 (309)
                      .+..+..   |...+..++|+  ++++++++.||+|++||+.+++..... .|...+..++|+|+++++++++.. +++|
T Consensus       344 ~~~~~~~---h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~dg~i~iw  417 (464)
T 3v7d_B          344 LMYTLQG---HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGSENQFNIY  417 (464)
T ss_dssp             EEEEECC---CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEETTEEEEE
T ss_pred             EEEEEeC---CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEecCCeEEEE
Confidence            8887753   55678888886  589999999999999999988766554 466778899999999999998842 6666


Q ss_pred             eec
Q 021648          296 IPD  298 (309)
Q Consensus       296 ~~~  298 (309)
                      ..+
T Consensus       418 d~~  420 (464)
T 3v7d_B          418 NLR  420 (464)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            553

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-38  Score=284.23  Aligned_cols=282  Identities=16%  Similarity=0.253  Sum_probs=227.0

Q ss_pred             CCcceEEEEeCCCCC-EEEEe----------eCCCcEEEEEcCCCce---eeeeeccccceeEEEEecCCCEEEEEcCCC
Q 021648           10 YNGRISSMDFHKSSS-YLVTA----------SDDESIRLYDVTAATC---LKTINSKKYGVDLVCFTSHPTTVIYSSKNG   75 (309)
Q Consensus        10 h~~~V~~i~~s~~~~-~l~t~----------s~D~~v~iWd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g   75 (309)
                      +...|.+++|+|+++ +|++|          +.|++|+|||+.+++.   +..+ .|...+..++|++++..+++++.  
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~--   87 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALD--   87 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEES--
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEcc--
Confidence            456899999999987 99999          8999999999998763   3334 46778999999999999988764  


Q ss_pred             CCceeEEEEccC----CceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCce------eeeee---ee--c
Q 021648           76 WDESLRLLSLHD----NKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEK------CQGLL---RV--Q  139 (309)
Q Consensus        76 ~d~~i~~~d~~~----~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~------~~~~~---~~--~  139 (309)
                       |+.|++||+.+    .+.+..+.+|.+.|.+++|+|+ +++|++++.|++|++||+++.+      ....+   ..  .
T Consensus        88 -dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  166 (416)
T 2pm9_A           88 -NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD  166 (416)
T ss_dssp             -SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred             -CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence             78999999987    4578889999999999999998 8899999999999999998775      22221   11  1


Q ss_pred             CceeEEECCC-CcEEE-EEECCEEEEEECCCCCcCCceEEEeCCC------CCCCeEEEEccCC-CEEEEEeCCC---cE
Q 021648          140 GRPAAAYDDQ-GLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGD------ISDANVVKFSNDG-RLMLLTTMEG---HI  207 (309)
Q Consensus       140 ~~~~~~~~~~-~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~------~~~~~~v~~s~dg-~~l~~~~~dg---~v  207 (309)
                      ....+.+.++ +.+++ ++.++.|++||++..+    ....+..+      ...+.+++|+|++ .++++++.|+   .|
T Consensus       167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i  242 (416)
T 2pm9_A          167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKK----EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI  242 (416)
T ss_dssp             CCCEEEECSSCTTEEEEESSSSCEEEEETTTTE----EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred             CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC----cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence            2234667766 45444 4568999999987643    12233333      5679999999997 6899999998   99


Q ss_pred             EEEECCCC-eEeEEeeecCCCCCccceEEECC-CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCe-eE
Q 021648          208 HVLDSFRG-TLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LM  284 (309)
Q Consensus       208 ~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~~  284 (309)
                      ++||++++ ..+..+.  ..|...+..++|+| ++++|++++.|+.|++||+.+++.+..+..|...+.+++|+|++ ++
T Consensus       243 ~~~d~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  320 (416)
T 2pm9_A          243 LIWDLRNANTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL  320 (416)
T ss_dssp             CEEETTSTTSCSBCCC--SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTE
T ss_pred             EEEeCCCCCCCcEEee--cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCE
Confidence            99999876 4443332  13557788999999 99999999999999999999999999999999999999999999 89


Q ss_pred             EEEccceEEEeeecCCC
Q 021648          285 FVTGSSELSFWIPDLSK  301 (309)
Q Consensus       285 l~s~~~d~~~~~~~~~~  301 (309)
                      |++++.|..+.+|++..
T Consensus       321 l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          321 FACASFDNKIEVQTLQN  337 (416)
T ss_dssp             EEECCSSSEEEEEESCC
T ss_pred             EEEEecCCcEEEEEccC
Confidence            99999985555555443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.1e-37  Score=263.46  Aligned_cols=277  Identities=16%  Similarity=0.193  Sum_probs=219.1

Q ss_pred             eEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee--ccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648           14 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL   91 (309)
Q Consensus        14 V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~   91 (309)
                      .+.|+||+++ +||+| .|++|+|||+.++++++.+.  +|...|.+++|+++++.+++++.   |++|++||+++++.+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~---Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS---SAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC---CCcEEEeecCCceeE
Confidence            5779999976 66665 59999999999999988775  45667999999999999998865   889999999999999


Q ss_pred             EEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee-eeeeec--CceeEEECCCCc-EEEEEECCEEEEEECC
Q 021648           92 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ-GLLRVQ--GRPAAAYDDQGL-VFAVAFGGYIRMFDAR  167 (309)
Q Consensus        92 ~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~-~~~~~~--~~~~~~~~~~~~-~~~~~~~~~i~~~d~~  167 (309)
                      ..+.+|...+.++.+  +++.+++++.|+.+++|+....... ..+..+  ......+.+.+. +++++.|+.|++||++
T Consensus       103 ~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  180 (318)
T 4ggc_A          103 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  180 (318)
T ss_dssp             EEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             EEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence            999999999887655  5679999999999999998765432 222221  123345556555 4555568999999998


Q ss_pred             CCCcCCceEEEeCCCCCCCeEEEEccCCCEE---EEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEE
Q 021648          168 KYEKGPFDIFSVGGDISDANVVKFSNDGRLM---LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  244 (309)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l---~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~  244 (309)
                      ..+...........+...+..++++|++..+   ++++.+++|++||...........    +...+..+.|+|+++.++
T Consensus       181 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~  256 (318)
T 4ggc_A          181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELI  256 (318)
T ss_dssp             CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEETTTTEEE
T ss_pred             CCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc----ceeeeeeeeecccccceE
Confidence            7554333344455566678899999987543   356678999999998877765543    345677889999999887


Q ss_pred             EEc--CCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCCC
Q 021648          245 SGS--GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK  301 (309)
Q Consensus       245 s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~  301 (309)
                      +++  .|+.|++||+.+++++.++.+|.+.|++++|+|++++|+||+.|..+.+|++..
T Consensus       257 ~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            764  799999999999999999999999999999999999999999996665555543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.2e-38  Score=283.06  Aligned_cols=277  Identities=17%  Similarity=0.207  Sum_probs=220.5

Q ss_pred             eEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648           14 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY   93 (309)
Q Consensus        14 V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~   93 (309)
                      +++++|+|++++|++++.|+++++||+.+++....+..+ ..+...+++++++.+++++.   |+.|++||+++++.+..
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~  134 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTT---EGDIKVLDSNFNLQREI  134 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEET---TSCEEEECTTSCEEEEE
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEEC---CCCEEEEeCCCcceeee
Confidence            447899999999999999999999999998888877776 33555678899999888764   78999999999999888


Q ss_pred             eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCc-EEEEEECCEEEEEECCCCC
Q 021648           94 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGL-VFAVAFGGYIRMFDARKYE  170 (309)
Q Consensus        94 ~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~  170 (309)
                      +.+|.+.|.+++|+|++++|++++.|++|++||++++++...+..+.  ...+.+.+++. +++++.|+.|++||++..+
T Consensus       135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            89999999999999999999999999999999999887766664332  23456666665 5555568999999987542


Q ss_pred             cCCceEEEeCC---C---------------------CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC
Q 021648          171 KGPFDIFSVGG---D---------------------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  226 (309)
Q Consensus       171 ~~~~~~~~~~~---~---------------------~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  226 (309)
                      .    ...+..   +                     ...+.+++|+|+|+++++++.||.|++||+.++..+..+..  .
T Consensus       215 ~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~  288 (420)
T 3vl1_A          215 T----IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS--K  288 (420)
T ss_dssp             E----EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC--T
T ss_pred             e----eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc--c
Confidence            1    111111   1                     23455566789999999999999999999999887766532  3


Q ss_pred             CCCccceEEECCCCC-EEEEEcCCCcEEEEECCCCce-EEEeec-CCCCCcEEEECCCeeEEEEccceEEEeeecCCC
Q 021648          227 SRNSTLEASFSPEGM-FVISGSGDGSVYAWSVRSGKE-VASWMS-FDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK  301 (309)
Q Consensus       227 ~~~~~~~~~~sp~g~-~l~s~s~Dg~i~vwd~~~~~~-~~~~~~-~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~  301 (309)
                      +...+.+++|+|+++ +|++|+.||.|++||+++++. +..+.. |...+.++. .|++++|++++.|..+.+|++..
T Consensus       289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTEEEEEETTTEEEEEEEECC
T ss_pred             cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCCEEEEecCCccEEEEeccC
Confidence            556788999999999 999999999999999998754 677766 556666675 56788999999885555554433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=7.9e-38  Score=271.81  Aligned_cols=261  Identities=10%  Similarity=0.174  Sum_probs=212.3

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC----ceeeeeeccccceeEEEEec--CCCEEEEEcCCCCC
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWD   77 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~~~~~s~~g~d   77 (309)
                      -..+.+|++.|++++|+|++++||+|+.|++|+|||+.++    +.+..+.+|...|..++|++  ++..+++++.   |
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~---d   80 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY---D   80 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET---T
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC---C
Confidence            3567899999999999999999999999999999999876    45677888999999999999  5888888764   8


Q ss_pred             ceeEEEEccCC---------ceEEEeeecccCEEEEEecCC--CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEE
Q 021648           78 ESLRLLSLHDN---------KYLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY  146 (309)
Q Consensus        78 ~~i~~~d~~~~---------~~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~  146 (309)
                      ++|++||+.++         +.+..+.+|.+.|.+++|+|+  +++|++++.||.|++||+++++....+.....     
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----  155 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE-----  155 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE-----
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc-----
Confidence            89999999887         557888999999999999999  99999999999999999988765433321110     


Q ss_pred             CCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC---CCEEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648          147 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND---GRLMLLTTMEGHIHVLDSFRGTLLSTYNV  223 (309)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d---g~~l~~~~~dg~v~i~d~~~~~~~~~~~~  223 (309)
                                    +...   .        .....+...+.+++++|+   +.++++++.++.+.+|+...+........
T Consensus       156 --------------~~~~---~--------~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  210 (351)
T 3f3f_A          156 --------------MKVL---S--------IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL  210 (351)
T ss_dssp             --------------EESC---S--------CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC
T ss_pred             --------------cccc---c--------cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec
Confidence                          0000   0        011124457889999997   99999999999998888777665322222


Q ss_pred             cCCCCCccceEEECCCC----CEEEEEcCCCcEEEEECCCC---------------------------------------
Q 021648          224 KPVSRNSTLEASFSPEG----MFVISGSGDGSVYAWSVRSG---------------------------------------  260 (309)
Q Consensus       224 ~~~~~~~~~~~~~sp~g----~~l~s~s~Dg~i~vwd~~~~---------------------------------------  260 (309)
                       ..|...+.+++|+|++    ++|++|+.||.|++||+.++                                       
T Consensus       211 -~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (351)
T 3f3f_A          211 -PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE  289 (351)
T ss_dssp             -CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------------
T ss_pred             -CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeee
Confidence             2466788999999998    89999999999999999875                                       


Q ss_pred             -------ceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeec
Q 021648          261 -------KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  298 (309)
Q Consensus       261 -------~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~  298 (309)
                             +.+..+.+|...|++++|+|++++|++++.|  +++|..+
T Consensus       290 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          290 LQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             -CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence                   5667778899999999999999999999998  5556554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7.9e-37  Score=308.52  Aligned_cols=288  Identities=18%  Similarity=0.256  Sum_probs=236.4

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC--EEEEEcCCCCCce
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWDES   79 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~s~~g~d~~   79 (309)
                      +...++.+|.+.|.+++|+|++++|++|+.|++|+|||+.+++++..+.+|...+.+++|+++++  .+++++   .|+.
T Consensus       648 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~---~d~~  724 (1249)
T 3sfz_A          648 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS---NDFF  724 (1249)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEE---TTSC
T ss_pred             CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEe---CCCe
Confidence            45678899999999999999999999999999999999999999999999999999999999644  455554   3889


Q ss_pred             eEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC---------------ceeE
Q 021648           80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---------------RPAA  144 (309)
Q Consensus        80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~---------------~~~~  144 (309)
                      |++||+.+++.+..+.+|.+.|++++|+|+++.|++++.||+|++||+++++....+....               ....
T Consensus       725 v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  804 (1249)
T 3sfz_A          725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC  804 (1249)
T ss_dssp             EEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred             EEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence            9999999999999999999999999999999999999999999999998887655543211               1234


Q ss_pred             EECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeec
Q 021648          145 AYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  224 (309)
Q Consensus       145 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  224 (309)
                      .+.+++..++++.++.+.+||+.....   ......++...+.+++|+|+++++++++.||.|++||..++..+..+.  
T Consensus       805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--  879 (1249)
T 3sfz_A          805 SWSADGDKIIVAAKNKVLLFDIHTSGL---LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR--  879 (1249)
T ss_dssp             CBCTTSSEEEEEETTEEEEEETTTCCE---EEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC--
T ss_pred             EECCCCCEEEEEcCCcEEEEEecCCCc---eeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC--
Confidence            567888888888899999999876431   222334667789999999999999999999999999999988776654  


Q ss_pred             CCCCCccceEEECCCCCEEEEEcCCCcEEEEEC-----------------------------------------------
Q 021648          225 PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV-----------------------------------------------  257 (309)
Q Consensus       225 ~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~-----------------------------------------------  257 (309)
                       .|...+..++|+|+|+++++++.|+.|++||+                                               
T Consensus       880 -~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  958 (1249)
T 3sfz_A          880 -GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY  958 (1249)
T ss_dssp             -CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE
T ss_pred             -CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE
Confidence             34556677777777777777777777777764                                               


Q ss_pred             --------------------------------CCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeec
Q 021648          258 --------------------------------RSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  298 (309)
Q Consensus       258 --------------------------------~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~  298 (309)
                                                      .+++.+..+.+|...|.+++|+|+++.+++++.|  +++|...
T Consensus       959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A          959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp             ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETT
T ss_pred             cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence                                            3444555666788899999999999999999987  5555443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.4e-37  Score=268.36  Aligned_cols=256  Identities=15%  Similarity=0.211  Sum_probs=199.1

Q ss_pred             cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC--ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648            8 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      .+|.+.|.+++|+|++++|++|+.|++++|||+.++  +++.++.+|...|..++|+|+++.+++++.   |++|++||+
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~---D~~v~iwd~  134 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR---DKSVWVWEV  134 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC---CCeEEEEEC
Confidence            689999999999999999999999999999999866  567889999999999999999999998865   889999999


Q ss_pred             cCCc---eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee--eeeec--CceeEEECCCCcEEEE-EE
Q 021648           86 HDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRVQ--GRPAAAYDDQGLVFAV-AF  157 (309)
Q Consensus        86 ~~~~---~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~-~~  157 (309)
                      .+++   .+..+.+|...|.+++|+|++++|++++.|++|++||.++++...  .+..+  ....+.+++++.++++ +.
T Consensus       135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             CTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence            8763   466788999999999999999999999999999999987765332  22222  2335677887765555 56


Q ss_pred             CCEEEEEECCCCCcCC-----------ceEEEeCC-CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeE----eE--
Q 021648          158 GGYIRMFDARKYEKGP-----------FDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL----LS--  219 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~-----------~~~~~~~~-~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~----~~--  219 (309)
                      |+.|++||........           ..+..+.+ +...+..++|+|++..+++++.|+.|++|+...+..    ..  
T Consensus       215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~  294 (345)
T 3fm0_A          215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL  294 (345)
T ss_dssp             TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred             CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence            8999999964321110           01122333 566889999999999999999999999999765421    11  


Q ss_pred             EeeecCCCCCccceEEECCCC-CEEEEEcCCCcEEEEECCCCceEEEe
Q 021648          220 TYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGKEVASW  266 (309)
Q Consensus       220 ~~~~~~~~~~~~~~~~~sp~g-~~l~s~s~Dg~i~vwd~~~~~~~~~~  266 (309)
                      .......|...|.+++|+|++ .+|||||.||+|++|++.++++....
T Consensus       295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            112223567789999999998 59999999999999999988765443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-37  Score=268.32  Aligned_cols=252  Identities=15%  Similarity=0.207  Sum_probs=186.7

Q ss_pred             ceEe-cC-CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC-------CceeeeeeccccceeEEEEecCCCEEEEEcCC
Q 021648            4 GMSF-RD-YNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN   74 (309)
Q Consensus         4 ~~~~-~~-h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~   74 (309)
                      ...+ .+ |.+.|.+++|+|++++|++|+.|++|+|||+..       .+++..+.+|...|..++|+|+++++++++. 
T Consensus        49 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~-  127 (330)
T 2hes_X           49 IDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR-  127 (330)
T ss_dssp             EEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET-
T ss_pred             EEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC-
Confidence            3445 44 999999999999999999999999999999853       4567788899999999999999999998865 


Q ss_pred             CCCceeEEEEccC-C---ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc--eeeeeeeecC--ceeEEE
Q 021648           75 GWDESLRLLSLHD-N---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE--KCQGLLRVQG--RPAAAY  146 (309)
Q Consensus        75 g~d~~i~~~d~~~-~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~--~~~~~~~~~~--~~~~~~  146 (309)
                        |++|++||+.. +   +.+..+.+|...|.+++|+|++++|+|++.|++|++||.+++  ++...+..+.  .....+
T Consensus       128 --D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~  205 (330)
T 2hes_X          128 --DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF  205 (330)
T ss_dssp             --TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred             --CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEe
Confidence              88999999943 2   467788999999999999999999999999999999998765  3444443222  234556


Q ss_pred             CCC--Cc-EEEEEECCEEEEEECCCCCcCC----ceEEEeCC-CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe
Q 021648          147 DDQ--GL-VFAVAFGGYIRMFDARKYEKGP----FDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL  218 (309)
Q Consensus       147 ~~~--~~-~~~~~~~~~i~~~d~~~~~~~~----~~~~~~~~-~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~  218 (309)
                      .++  +. +++++.|+.|++||++......    .....+.+ +...+.+++|++++ ++++++.||.|++||..+++..
T Consensus       206 ~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~  284 (330)
T 2hes_X          206 DKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK  284 (330)
T ss_dssp             CCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE
T ss_pred             cCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE
Confidence            665  44 5556678999999986432111    11222322 66789999999766 7899999999999998877432


Q ss_pred             EEeeecCCCCC-ccceEEECC--CCCEEEEEcCCCcEEEEECCC
Q 021648          219 STYNVKPVSRN-STLEASFSP--EGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       219 ~~~~~~~~~~~-~~~~~~~sp--~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      ........|.. .+..++|+|  ++++|+|||.||+|++||+.+
T Consensus       285 ~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          285 VFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            11111123444 688899999  789999999999999999865

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.9e-36  Score=274.30  Aligned_cols=280  Identities=19%  Similarity=0.310  Sum_probs=232.8

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +..+++.+|.+.|.++.|+  ++++++|+.|++|++||+.+++++..+.+|...+.++++.  ++.+++++.   |++|+
T Consensus       150 ~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~---dg~i~  222 (445)
T 2ovr_B          150 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR---DATLR  222 (445)
T ss_dssp             CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET---TSEEE
T ss_pred             cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC---CCEEE
Confidence            4567889999999999998  5799999999999999999999999999999989888885  567777764   88999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCCcEEEEEECC
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVAFGG  159 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  159 (309)
                      +||+.+++.+..+.+|...|.++.+  +++.+++++.||.|++||++++++...+..+...  ...+ +...+++++.|+
T Consensus       223 ~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~  299 (445)
T 2ovr_B          223 VWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDT  299 (445)
T ss_dssp             EEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEEETTS
T ss_pred             EEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-CCCEEEEEeCCC
Confidence            9999999999999999999999998  6789999999999999999988877666533322  2333 444566666799


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      .|++||+++.+    .+..+.++...+.++.  ++++++++++.||.|++||+.+++.+..+.....+...+.+++|+  
T Consensus       300 ~i~i~d~~~~~----~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--  371 (445)
T 2ovr_B          300 SIRVWDVETGN----CIHTLTGHQSLTSGME--LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--  371 (445)
T ss_dssp             CEEEEETTTCC----EEEEECCCCSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--
T ss_pred             eEEEEECCCCC----EEEEEcCCcccEEEEE--EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--
Confidence            99999997643    2345556655555554  567899999999999999999999888877544466778888885  


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEe-----ecCCCCCcEEEECCCeeEEEEccceE----EEeeecC
Q 021648          240 GMFVISGSGDGSVYAWSVRSGKEVASW-----MSFDTEPPVIKWTPGSLMFVTGSSEL----SFWIPDL  299 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~~~~~~~~~-----~~~~~~v~~l~~~p~~~~l~s~~~d~----~~~~~~~  299 (309)
                      ++++++|+.||.|++||+.+++.+..+     ..|.+.|.+++|+|++..+++|+.|.    ++.+++.
T Consensus       372 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df  440 (445)
T 2ovr_B          372 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF  440 (445)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence            689999999999999999999998887     47888999999999999999999874    3665554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-37  Score=273.99  Aligned_cols=256  Identities=13%  Similarity=0.109  Sum_probs=206.2

Q ss_pred             CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcC--CCceeeeeeccccceeEEEEecC--CCEEEEEcCCCC
Q 021648            1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGW   76 (309)
Q Consensus         1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~s~~g~   76 (309)
                      +++.+.+.+|++.|.+++|+|++++||+|+.|++|+|||+.  +++++..+.+|...|..++|+++  +..+++++.   
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---   77 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY---   77 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc---
Confidence            36778899999999999999999999999999999999998  66778889999999999999877  788888764   


Q ss_pred             CceeEEEEccCCc--eEEEeeecccCEEEEEecCC--CCeEEEecCCCcEEEeeCCCceeeeeeee--c--CceeEEECC
Q 021648           77 DESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRV--Q--GRPAAAYDD  148 (309)
Q Consensus        77 d~~i~~~d~~~~~--~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~--~--~~~~~~~~~  148 (309)
                      |+.|++||+.+++  .+..+.+|...|.+++|+|+  ++.|++++.|+.|++||+++.........  .  ......+.+
T Consensus        78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~  157 (379)
T 3jrp_A           78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  157 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred             CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence            8899999999987  77888899999999999999  89999999999999999987744332222  1  123455665


Q ss_pred             -------------CC-cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC---CCEEEEEeCCCcEEEEE
Q 021648          149 -------------QG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND---GRLMLLTTMEGHIHVLD  211 (309)
Q Consensus       149 -------------~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d---g~~l~~~~~dg~v~i~d  211 (309)
                                   ++ .+++++.|+.|++||++...........+.++...+.+++|+|+   ++++++++.||.|++||
T Consensus       158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence                         34 45555668999999997654322234466677889999999999   89999999999999999


Q ss_pred             CCCCeEe--EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          212 SFRGTLL--STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       212 ~~~~~~~--~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      +.++...  ........+...+.+++|+|+|++|++++.||.|++|++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            9876421  11111222556788999999999999999999999999974

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-36  Score=271.85  Aligned_cols=241  Identities=17%  Similarity=0.258  Sum_probs=199.8

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR   92 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~   92 (309)
                      .|.+++|+|+|++|++|+.|++|+|||+.+++++..+.+|...|..++|+|+++.+++++.   |++|++||+.+++...
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~---d~~v~iwd~~~~~~~~  201 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG---DRTVRIWDLRTGQCSL  201 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC---CCcEEEEECCCCeeEE
Confidence            4999999999999999999999999999999999999999999999999999999988764   8999999999998877


Q ss_pred             EeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeee-------c--CceeEEECCCCcEEEE-EECCEE
Q 021648           93 YFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRV-------Q--GRPAAAYDDQGLVFAV-AFGGYI  161 (309)
Q Consensus        93 ~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~-~~~~~i  161 (309)
                      .+. |...+.+++|+| ++++|++++.|++|++||++++++...+..       +  ....+.+.+++.++++ +.|+.|
T Consensus       202 ~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v  280 (393)
T 1erj_A          202 TLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV  280 (393)
T ss_dssp             EEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence            765 667899999999 899999999999999999998876655421       1  1234667777765554 568999


Q ss_pred             EEEECCCCCcC--------CceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648          162 RMFDARKYEKG--------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  233 (309)
Q Consensus       162 ~~~d~~~~~~~--------~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~  233 (309)
                      ++||++.....        ......+.++...+.+++++|+++++++++.|+.|++||..+++.+..+.   .|...+.+
T Consensus       281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~---~h~~~v~~  357 (393)
T 1erj_A          281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ---GHRNSVIS  357 (393)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEE
T ss_pred             EEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC---CCCCCEEE
Confidence            99998753211        11233455677789999999999999999999999999999999887765   35677888


Q ss_pred             EEECC------CCCEEEEEcCCCcEEEEECCCC
Q 021648          234 ASFSP------EGMFVISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       234 ~~~sp------~g~~l~s~s~Dg~i~vwd~~~~  260 (309)
                      ++|+|      ++++|+|||.||+|+||++.+.
T Consensus       358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            99876      7899999999999999998643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=271.25  Aligned_cols=292  Identities=15%  Similarity=0.197  Sum_probs=227.7

Q ss_pred             cceEecCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCceeeeee-------------ccccceeEEEEec-CCCE
Q 021648            3 VGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTIN-------------SKKYGVDLVCFTS-HPTT   67 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~~   67 (309)
                      ....+++|.+.|++++|+| ++++|++|+.|++|++||+.+++....+.             +|...|..++|+| ++..
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            4567789999999999999 99999999999999999999887766654             4788899999999 6667


Q ss_pred             EEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCC---CCeEEEecCCCcEEEeeCCCceeeeeeeecC--ce
Q 021648           68 VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RP  142 (309)
Q Consensus        68 ~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~---~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~  142 (309)
                      +++++.   |+.|++||+.+++.+..+. +...+.++.+++.   +.++++++.|+.|++||++++++...+....  ..
T Consensus       115 l~s~~~---d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~  190 (408)
T 4a11_B          115 FTSSSF---DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL  190 (408)
T ss_dssp             EEEEET---TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred             EEEEeC---CCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence            777654   8899999999998887776 8889999999984   4499999999999999999887766654332  23


Q ss_pred             eEEECCCCc--EEEEEECCEEEEEECCCCCcCCceE------------EEeCCCCCCCeEEEEccCCCEEEEEeCCCcEE
Q 021648          143 AAAYDDQGL--VFAVAFGGYIRMFDARKYEKGPFDI------------FSVGGDISDANVVKFSNDGRLMLLTTMEGHIH  208 (309)
Q Consensus       143 ~~~~~~~~~--~~~~~~~~~i~~~d~~~~~~~~~~~------------~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~  208 (309)
                      ...+.+++.  +++++.|+.|++||++.........            .....+...+.+++|+|+++++++++.||.|+
T Consensus       191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  270 (408)
T 4a11_B          191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR  270 (408)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence            456777664  4456678999999997654211110            01134556789999999999999999999999


Q ss_pred             EEECCCCeEeEEeeecC--CCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEE
Q 021648          209 VLDSFRGTLLSTYNVKP--VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV  286 (309)
Q Consensus       209 i~d~~~~~~~~~~~~~~--~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  286 (309)
                      +||+.+++....+....  ..............+..+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|+
T Consensus       271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  350 (408)
T 4a11_B          271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY  350 (408)
T ss_dssp             EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred             EEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE
Confidence            99998877654332111  1111111122234466777888899999999999999999999999999999999999999


Q ss_pred             Eccce--EEEeeec
Q 021648          287 TGSSE--LSFWIPD  298 (309)
Q Consensus       287 s~~~d--~~~~~~~  298 (309)
                      +++.|  +++|.++
T Consensus       351 s~~~dg~i~iw~~~  364 (408)
T 4a11_B          351 SGSRDCNILAWVPS  364 (408)
T ss_dssp             EEETTSCEEEEEEC
T ss_pred             EECCCCeEEEEeCC
Confidence            99988  5556553

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-38  Score=290.40  Aligned_cols=283  Identities=13%  Similarity=0.118  Sum_probs=204.7

Q ss_pred             eEecCCCcceEEEEeCCC------CCEEEEeeCCCcEEEEEcCCCcee-----------eeeeccccceeEEEEecCCCE
Q 021648            5 MSFRDYNGRISSMDFHKS------SSYLVTASDDESIRLYDVTAATCL-----------KTINSKKYGVDLVCFTSHPTT   67 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~------~~~l~t~s~D~~v~iWd~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~   67 (309)
                      .++.+|.+.|.+++|+|+      +.+||||+.|++|||||+.++++.           .++.+|...|.+++|+++ ..
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~  279 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TT  279 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SE
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-Ce
Confidence            456788999999999997      579999999999999999876432           367788888999999875 46


Q ss_pred             EEEEcCCCCCceeEEEEccCCc-eEEEeeecccCEEEE--EecCCC-CeEEEecCCCcEEEeeCCCceeeeeeeec----
Q 021648           68 VIYSSKNGWDESLRLLSLHDNK-YLRYFKGHHDRVVSL--SLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQ----  139 (309)
Q Consensus        68 ~~~~s~~g~d~~i~~~d~~~~~-~~~~~~~h~~~v~~v--~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~----  139 (309)
                      +++++.   |++|++||+++++ ....+.+|.+.|++|  .|+|++ ++|+|+|.|++|++||++++++...+...    
T Consensus       280 lasgs~---DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~  356 (524)
T 2j04_B          280 VVCGFK---NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGS  356 (524)
T ss_dssp             EEEEET---TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCC
T ss_pred             EEEEeC---CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccC
Confidence            777654   8999999998764 456789999999999  567887 89999999999999999887765444321    


Q ss_pred             CceeEEECCCCcEEE-EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe
Q 021648          140 GRPAAAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL  218 (309)
Q Consensus       140 ~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~  218 (309)
                      ....+.++|++..++ ++.|+.|++||++....    ...+.+|...|.+++|||+|++|++++.||+|++||+..+ .+
T Consensus       357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~----~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~  431 (524)
T 2j04_B          357 NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA----VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LL  431 (524)
T ss_dssp             SCCCEEEETTTTEEEEECSSSEEEEEETTCTTC----CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TT
T ss_pred             cccceEeCCCcCeEEEeCCCCcEEEEECccccc----ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hc
Confidence            123467777665554 45678999999986432    2344567789999999999999999999999999998653 22


Q ss_pred             EEeeec--CCCCCccceEEECCCCCEEEEEcCCCcEEEEECC-CCceEEEeecCCCCCcEEEECCCee---EEEEccce-
Q 021648          219 STYNVK--PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR-SGKEVASWMSFDTEPPVIKWTPGSL---MFVTGSSE-  291 (309)
Q Consensus       219 ~~~~~~--~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~~p~~~---~l~s~~~d-  291 (309)
                      ..+...  ......++.++|+|+|+.+. ...  ..++|+.. ++..+.++.+|...|.+|+|+|+++   .+++|+.+ 
T Consensus       432 ~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g  508 (524)
T 2j04_B          432 HGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAG  508 (524)
T ss_dssp             TCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTS
T ss_pred             cccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCc
Confidence            111100  01112456889999998653 322  34455443 4667888899999999999999964   89999987 


Q ss_pred             -EEEeeecC
Q 021648          292 -LSFWIPDL  299 (309)
Q Consensus       292 -~~~~~~~~  299 (309)
                       +++|.+++
T Consensus       509 ~vrlw~l~~  517 (524)
T 2j04_B          509 LLTLEYLSL  517 (524)
T ss_dssp             EEEEEECSC
T ss_pred             eEEEEEccc
Confidence             66666554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.7e-36  Score=306.04  Aligned_cols=286  Identities=15%  Similarity=0.265  Sum_probs=242.2

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      ..+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++++.++.+|...|.+++|+|+++.+++++.   |++|++||
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---d~~v~vwd  685 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA---DKKVKIWD  685 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEE
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeC---CCeEEEEE
Confidence            467899999999999999999999999999999999999999999999999999999999999998864   88999999


Q ss_pred             ccCCceEEEeeecccCEEEEEecC--CCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEE-EEECC
Q 021648           85 LHDNKYLRYFKGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFA-VAFGG  159 (309)
Q Consensus        85 ~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~  159 (309)
                      +.+++.+..+.+|...|.+++|+|  ++..+++++.|++|++||++++++...+..+.  .....+.+++.+++ ++.|+
T Consensus       686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg  765 (1249)
T 3sfz_A          686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG  765 (1249)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSS
T ss_pred             CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCC
Confidence            999999999999999999999999  45589999999999999999988776654332  33456777775554 55689


Q ss_pred             EEEEEECCCCCcCCceEEEe-----------CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCC
Q 021648          160 YIRMFDARKYEKGPFDIFSV-----------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  228 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~  228 (309)
                      .|++||++.....  .....           ......+.+++|+|+|+.+++++ ++.+.+||..++..+..+..  .+.
T Consensus       766 ~v~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~--~~~  840 (1249)
T 3sfz_A          766 TLRLWDVRSANER--KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT--GHH  840 (1249)
T ss_dssp             EEEEEEGGGTEEE--EEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC--SSS
T ss_pred             eEEEEeCCCCccc--ceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC--CCC
Confidence            9999998754210  01110           11123577889999999999887 78999999999888776543  456


Q ss_pred             CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeec
Q 021648          229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD  298 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~  298 (309)
                      ..+..++|+|+++++++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++.|++++.|..+..|+
T Consensus       841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            7788999999999999999999999999999999999999999999999999999999999984444444

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.2e-37  Score=272.32  Aligned_cols=256  Identities=19%  Similarity=0.312  Sum_probs=204.2

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc-------eeeeeeccccceeEEEEecCCC-EEEEEcC
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-------CLKTINSKKYGVDLVCFTSHPT-TVIYSSK   73 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~   73 (309)
                      +....+.+|...|.+++|+|++++|++|+.|++++|||+.+..       ..+.+.+|...+..++|.|+.. .+++++.
T Consensus        99 ~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~  178 (380)
T 3iz6_a           99 QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG  178 (380)
T ss_dssp             EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECT
T ss_pred             ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECC
Confidence            3457788999999999999999999999999999999987532       3466788988899999998755 5666653


Q ss_pred             CCCCceeEEEEccCCceEEEe-----eecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCC-ceeeeeeeec--CceeE
Q 021648           74 NGWDESLRLLSLHDNKYLRYF-----KGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRA-EKCQGLLRVQ--GRPAA  144 (309)
Q Consensus        74 ~g~d~~i~~~d~~~~~~~~~~-----~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~-~~~~~~~~~~--~~~~~  144 (309)
                         |++|++||+.+++.+..+     .+|...|.++.|++ ++++|++|+.|++|++||++. .++...+..+  ....+
T Consensus       179 ---D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v  255 (380)
T 3iz6_a          179 ---DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV  255 (380)
T ss_dssp             ---TSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEE
T ss_pred             ---CCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEE
Confidence               899999999999988877     68999999999987 788999999999999999974 3444444322  23456


Q ss_pred             EECCCCcEEEE-EECCEEEEEECCCCCcCCceEEEeC-----CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe
Q 021648          145 AYDDQGLVFAV-AFGGYIRMFDARKYEKGPFDIFSVG-----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL  218 (309)
Q Consensus       145 ~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~  218 (309)
                      .+.+++.++++ +.|+.|++||++....  ...+...     .+...+.+++|+|+|+++++++.||.|++||..+++.+
T Consensus       256 ~~~p~~~~l~s~s~D~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~  333 (380)
T 3iz6_a          256 KFFPDGQRFGTGSDDGTCRLFDMRTGHQ--LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV  333 (380)
T ss_dssp             EECTTSSEEEEECSSSCEEEEETTTTEE--EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred             EEecCCCeEEEEcCCCeEEEEECCCCcE--EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE
Confidence            77887765554 5689999999986431  1111111     11234789999999999999999999999999988877


Q ss_pred             EEeee-cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 021648          219 STYNV-KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  262 (309)
Q Consensus       219 ~~~~~-~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~  262 (309)
                      ..+.. ...|...|.+++|+|||++|+|||.|++|++|++...+.
T Consensus       334 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          334 LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             EEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred             EEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence            66532 234677899999999999999999999999999976543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.4e-36  Score=269.24  Aligned_cols=277  Identities=17%  Similarity=0.225  Sum_probs=221.8

Q ss_pred             cCCCcce--EEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec-cccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            8 RDYNGRI--SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         8 ~~h~~~V--~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      .+|...+  .+++|++  ..+++++.|++|++||+.++++...+.. |...|..++|+|++..+++++.   |+.|++||
T Consensus        88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~---dg~i~iwd  162 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLG---NGLVDIYD  162 (401)
T ss_dssp             TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEET---TSCEEEEE
T ss_pred             CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECC---CCeEEEEE
Confidence            3666654  4455554  6688999999999999999998888776 6778999999999999988864   78999999


Q ss_pred             ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCC-ceeeeeeeecC--ceeEEECCCCcEEEE-EECCE
Q 021648           85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLLRVQG--RPAAAYDDQGLVFAV-AFGGY  160 (309)
Q Consensus        85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~  160 (309)
                      +++++.+..+.+|...|.+++|  +++.|++++.||.|++||++. ......+..+.  .....+.+++.++++ +.|+.
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~  240 (401)
T 4aez_A          163 VESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV  240 (401)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence            9999999999999999999999  457999999999999999984 44444433222  334567777765555 45899


Q ss_pred             EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCC-EEEEEe--CCCcEEEEECCCCeEeEEeeecCCCCCccceEEEC
Q 021648          161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  237 (309)
Q Consensus       161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~s  237 (309)
                      |++||++...    ....+..+...+.+++++|++. ++++++  .|+.|++||+.+++.+..+.    +...+..++|+
T Consensus       241 v~iwd~~~~~----~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s  312 (401)
T 4aez_A          241 VQIWDARSSI----PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWS  312 (401)
T ss_dssp             EEEEETTCSS----EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEC
T ss_pred             EEEccCCCCC----ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEEC
Confidence            9999998632    3445566778899999999774 555554  69999999999999888775    33568899999


Q ss_pred             CCCCEEEE--EcCCCcEEEEECCCCceE--EEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          238 PEGMFVIS--GSGDGSVYAWSVRSGKEV--ASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       238 p~g~~l~s--~s~Dg~i~vwd~~~~~~~--~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      |+++++++  |+.||.|++||+.+++..  ..+.+|...|.+++|+|++++|++++.|..+.+|++
T Consensus       313 ~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~  378 (401)
T 4aez_A          313 PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV  378 (401)
T ss_dssp             SSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred             CCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            99999999  558999999999986554  446789999999999999999999998844444433

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.4e-36  Score=264.78  Aligned_cols=247  Identities=13%  Similarity=0.208  Sum_probs=195.1

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      ...+.+|...|.+++|+|++.+++||+.|++|+|||+.++++++.+.+|...|..++|+|+++.+++++.   |++|++|
T Consensus        69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~---d~~i~~w  145 (343)
T 2xzm_R           69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA---EREIKLW  145 (343)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET---TSCEEEE
T ss_pred             cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC---CCEEEEE
Confidence            4678999999999999999999999999999999999999999999999999999999999999988764   8899999


Q ss_pred             EccCCceEEEee---ecccCEEEEEecCCC----------CeEEEecCCCcEEEeeCCCceeeeeeeec--CceeEEECC
Q 021648           84 SLHDNKYLRYFK---GHHDRVVSLSLCSSK----------DCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDD  148 (309)
Q Consensus        84 d~~~~~~~~~~~---~h~~~v~~v~~~~~~----------~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~~~~~~~~~  148 (309)
                      |+... ....+.   +|...|.++.|+|++          .+|++++.|++|++||.. .+....+..+  ....+.+++
T Consensus       146 d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~  223 (343)
T 2xzm_R          146 NILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISP  223 (343)
T ss_dssp             ESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECT
T ss_pred             eccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECC
Confidence            99743 333333   799999999999986          689999999999999953 4443333322  234567788


Q ss_pred             CCcEEEE-EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeE--Eeeec-
Q 021648          149 QGLVFAV-AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS--TYNVK-  224 (309)
Q Consensus       149 ~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~--~~~~~-  224 (309)
                      ++.++++ +.|+.|++||++..... ...+.   +...+.+++|+|+++++++ +.|+.|++||+.+++...  .+... 
T Consensus       224 ~g~~l~sgs~dg~v~iwd~~~~~~~-~~~~~---~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~  298 (343)
T 2xzm_R          224 NGKYIATGGKDKKLLIWDILNLTYP-QREFD---AGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEP  298 (343)
T ss_dssp             TSSEEEEEETTCEEEEEESSCCSSC-SEEEE---CSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCS
T ss_pred             CCCEEEEEcCCCeEEEEECCCCccc-ceeec---CCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCc
Confidence            8766655 46899999998643322 12222   1245899999999998765 468889999998765443  22211 


Q ss_pred             -------CCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCC
Q 021648          225 -------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       225 -------~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~  260 (309)
                             ..+...+.+++|+|+|++|++|+.||+|++|++.++
T Consensus       299 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          299 ITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             GGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             chhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence                   134556889999999999999999999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.5e-36  Score=258.16  Aligned_cols=247  Identities=17%  Similarity=0.310  Sum_probs=206.5

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ++...+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...+..++|+|+++.+++++.   |++|+
T Consensus        56 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~  132 (312)
T 4ery_A           56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---DESVR  132 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET---TSCEE
T ss_pred             ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC---CCcEE
Confidence            456778899999999999999999999999999999999999999999999999999999999999988764   88999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec---CceeEEECCCCcEEE-EEE
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---GRPAAAYDDQGLVFA-VAF  157 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~  157 (309)
                      +||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||++++++...+...   ......+.+++.+++ ++.
T Consensus       133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
T 4ery_A          133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL  212 (312)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET
T ss_pred             EEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC
Confidence            9999999999999999999999999999999999999999999999988776554322   123456777776555 456


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCCCCC---CeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGDISD---ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~---~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                      |+.|++||++..+    ......++...   +......++++++++++.||.|++||+.+++.+..+.   .|...+..+
T Consensus       213 d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~  285 (312)
T 4ery_A          213 DNTLKLWDYSKGK----CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ---GHTDVVIST  285 (312)
T ss_dssp             TTEEEEEETTTTE----EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC---CCSSCEEEE
T ss_pred             CCeEEEEECCCCc----EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh---ccCCcEEEE
Confidence            8999999987643    12333333322   2223334688999999999999999999999887775   356778999


Q ss_pred             EECCCCCEEEEEc--CCCcEEEEECC
Q 021648          235 SFSPEGMFVISGS--GDGSVYAWSVR  258 (309)
Q Consensus       235 ~~sp~g~~l~s~s--~Dg~i~vwd~~  258 (309)
                      +|+|+++++++++  .|++|++|+..
T Consensus       286 ~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          286 ACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             eecCcCCceEEEEccCCccEEEecCC
Confidence            9999999999997  69999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.7e-35  Score=269.07  Aligned_cols=280  Identities=18%  Similarity=0.351  Sum_probs=227.2

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEec--CCCEEEEEcCCCCCce
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDES   79 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~s~~g~d~~   79 (309)
                      +...++.+|.+.|.+++|+|++ +|++|+.|++|++||+.+++++..+.+|...|.++++.+  ++..+++++.   |++
T Consensus       153 ~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~---d~~  228 (464)
T 3v7d_B          153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR---DNT  228 (464)
T ss_dssp             EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEET---TSC
T ss_pred             cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcC---CCc
Confidence            4567889999999999999988 999999999999999999999999999999999999985  4556777654   889


Q ss_pred             eEEEEccCCc-----------------------eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeee
Q 021648           80 LRLLSLHDNK-----------------------YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL  136 (309)
Q Consensus        80 i~~~d~~~~~-----------------------~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~  136 (309)
                      |++||+.+++                       .+..+.+|...|.++  +++++++++++.|++|++||++++++...+
T Consensus       229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  306 (464)
T 3v7d_B          229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL  306 (464)
T ss_dssp             EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            9999998765                       256788999999987  577899999999999999999998887666


Q ss_pred             eecC--ceeEEECCCCc-EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC
Q 021648          137 RVQG--RPAAAYDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  213 (309)
Q Consensus       137 ~~~~--~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~  213 (309)
                      ..+.  .....+.+++. +++++.|+.|++||+++.+    .+..+.++...+.+++++  +.++++++.||.|++||+.
T Consensus       307 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~  380 (464)
T 3v7d_B          307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAN  380 (464)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECC
Confidence            4332  23456666665 5555568999999987643    345667787888888887  6899999999999999999


Q ss_pred             CCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEE-eecCCCCCcEEEECCCeeEEEEccce-
Q 021648          214 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVTGSSE-  291 (309)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~s~~~d-  291 (309)
                      ++.......    +...+..++|+|+++++++|+ ||.|++||+.+++.+.. +..|...|.+++|+ +..++++++.+ 
T Consensus       381 ~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g  454 (464)
T 3v7d_B          381 DYSRKFSYH----HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDG  454 (464)
T ss_dssp             TCCEEEEEE----CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETT
T ss_pred             CCceeeeec----CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCC
Confidence            877665543    234456689999999999999 89999999999999886 66788899999997 44555555544 


Q ss_pred             -EEEeeecC
Q 021648          292 -LSFWIPDL  299 (309)
Q Consensus       292 -~~~~~~~~  299 (309)
                       ..+|.+|.
T Consensus       455 ~~~i~~ldf  463 (464)
T 3v7d_B          455 QSFLEILDF  463 (464)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEeec
Confidence             56667664

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-36  Score=292.22  Aligned_cols=286  Identities=15%  Similarity=0.176  Sum_probs=209.6

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee-----------eeeeccccceeEEEEecCC-CEEEE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-----------KTINSKKYGVDLVCFTSHP-TTVIY   70 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~-----------~~~~~~~~~v~~~~~~~~~-~~~~~   70 (309)
                      .+.++. |.+.|++++|+|++++|++|+.|++|++||+.++++.           ..+.+|..+|..++|+|++ ..+++
T Consensus        91 ~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~  169 (902)
T 2oaj_A           91 VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI  169 (902)
T ss_dssp             EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred             EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence            345564 7789999999999999999999999999999988764           3446677889999999965 45555


Q ss_pred             EcCCCCCceeEEEEccCCceEEEeeec------------------ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee
Q 021648           71 SSKNGWDESLRLLSLHDNKYLRYFKGH------------------HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC  132 (309)
Q Consensus        71 ~s~~g~d~~i~~~d~~~~~~~~~~~~h------------------~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~  132 (309)
                      ++.   |++| +||+++++.++.+.+|                  ...|++++|+|++++|+|++.||+|++||++++++
T Consensus       170 g~~---dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          170 SYE---YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             ECS---SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred             EeC---CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence            543   8899 9999999988888766                  57899999999999999999999999999876554


Q ss_pred             eee--e-----e------------ecC-ceeEEE----------------------------------------------
Q 021648          133 QGL--L-----R------------VQG-RPAAAY----------------------------------------------  146 (309)
Q Consensus       133 ~~~--~-----~------------~~~-~~~~~~----------------------------------------------  146 (309)
                      ...  +     .            ... ...+.+                                              
T Consensus       246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~  325 (902)
T 2oaj_A          246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK  325 (902)
T ss_dssp             EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred             EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence            321  0     0            000 000000                                              


Q ss_pred             --------------------------------------------------------------------------------
Q 021648          147 --------------------------------------------------------------------------------  146 (309)
Q Consensus       147 --------------------------------------------------------------------------------  146 (309)
                                                                                                      
T Consensus       326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~  405 (902)
T 2oaj_A          326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT  405 (902)
T ss_dssp             HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred             hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence                                                                                            


Q ss_pred             --------------------------------------CCCCc-EEEEEECCEEEEEECCCCCcCCceEEE--eC-----
Q 021648          147 --------------------------------------DDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFS--VG-----  180 (309)
Q Consensus       147 --------------------------------------~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~-----  180 (309)
                                                            .+++. +++++.|++|++||+..........+.  +.     
T Consensus       406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~  485 (902)
T 2oaj_A          406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK  485 (902)
T ss_dssp             EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred             EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence                                                  00111 222223455555555432211101111  11     


Q ss_pred             CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeE-------------------------------------------
Q 021648          181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-------------------------------------------  217 (309)
Q Consensus       181 ~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~-------------------------------------------  217 (309)
                      ++...|.+++|||||++||+++.||+|++||..+++.                                           
T Consensus       486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  565 (902)
T 2oaj_A          486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF  565 (902)
T ss_dssp             SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred             CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence            4556799999999999999999999999999876521                                           


Q ss_pred             --eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEE-----Eee-cCCCCCcEEEEC-----CC---
Q 021648          218 --LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA-----SWM-SFDTEPPVIKWT-----PG---  281 (309)
Q Consensus       218 --~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~-----~~~-~~~~~v~~l~~~-----p~---  281 (309)
                        +..+.   .|...|.+++||||| +||+|+.|++|++||++++..+.     .+. +|+..|++|+|+     ||   
T Consensus       566 ~~~~~l~---~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~  641 (902)
T 2oaj_A          566 MPSTAVH---ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYS  641 (902)
T ss_dssp             EEEEEEC---CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSE
T ss_pred             ceeEEEE---cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCc
Confidence              22222   367889999999999 99999999999999998876553     233 889999999999     87   


Q ss_pred             eeEEEEccce--EEEeee
Q 021648          282 SLMFVTGSSE--LSFWIP  297 (309)
Q Consensus       282 ~~~l~s~~~d--~~~~~~  297 (309)
                      ++.|++|+.|  +++|..
T Consensus       642 ~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          642 SILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             EEEEEEEETTSEEEEEEE
T ss_pred             ceEEEEEecCCcEEEEEE
Confidence            4899999998  555644

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.4e-36  Score=270.09  Aligned_cols=252  Identities=12%  Similarity=0.163  Sum_probs=208.5

Q ss_pred             cceEecCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCC-------ceeeeeeccccceeEEEEecCC-CEEEEEcC
Q 021648            3 VGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHP-TTVIYSSK   73 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~s~   73 (309)
                      ....+.+|.+.|.+++|+| ++++|++|+.|++|+|||+.++       +++..+.+|...|..++|+|++ ..+++++.
T Consensus        73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~  152 (402)
T 2aq5_A           73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC  152 (402)
T ss_dssp             TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred             CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence            3456789999999999999 9999999999999999999987       6678899999999999999998 46666654


Q ss_pred             CCCCceeEEEEccCCceEEEe--eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCc
Q 021648           74 NGWDESLRLLSLHDNKYLRYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL  151 (309)
Q Consensus        74 ~g~d~~i~~~d~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~  151 (309)
                         |++|++||+.+++.+..+  .+|.+.|.+++|+|+++.|++++.|+.|++||+++++....+.              
T Consensus       153 ---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------------  215 (402)
T 2aq5_A          153 ---DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD--------------  215 (402)
T ss_dssp             ---TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--------------
T ss_pred             ---CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec--------------
Confidence               889999999999999999  8899999999999999999999999999999998775433221              


Q ss_pred             EEEEEECCEEEEEECCCCCcCCceEEEeCCCC-CCCeEEEEccCCCEEEEE---eCCCcEEEEECCCCeE-eEEeeecCC
Q 021648          152 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI-SDANVVKFSNDGRLMLLT---TMEGHIHVLDSFRGTL-LSTYNVKPV  226 (309)
Q Consensus       152 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~v~~s~dg~~l~~~---~~dg~v~i~d~~~~~~-~~~~~~~~~  226 (309)
                                                  .++. ..+..++|+|++++++++   +.|+.|++||+.++.. +.....  .
T Consensus       216 ----------------------------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~--~  265 (402)
T 2aq5_A          216 ----------------------------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL--D  265 (402)
T ss_dssp             ----------------------------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC--C
T ss_pred             ----------------------------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec--c
Confidence                                        0011 135778999999999999   7999999999987654 333222  2


Q ss_pred             CCCccceEEECCCCCEEE-EEcCCCcEEEEECCCCce-EEEeec--CCCCCcEEEECCCeeEEEEccceEEEeeecCCC
Q 021648          227 SRNSTLEASFSPEGMFVI-SGSGDGSVYAWSVRSGKE-VASWMS--FDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK  301 (309)
Q Consensus       227 ~~~~~~~~~~sp~g~~l~-s~s~Dg~i~vwd~~~~~~-~~~~~~--~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~  301 (309)
                      +...+..++|+|++++|+ +|+.|+.|++||+.+++. +..+..  |...+.+++|+|++.++++++..+++|.+....
T Consensus       266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERK  344 (402)
T ss_dssp             CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEETTE
T ss_pred             CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcCCCc
Confidence            345678899999999996 556899999999998874 555544  458999999999999999888889999876543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.4e-35  Score=267.94  Aligned_cols=269  Identities=15%  Similarity=0.294  Sum_probs=220.0

Q ss_pred             cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648            8 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   87 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~   87 (309)
                      .+|...|.++.|  ++++|++|+.|++|++||+.+++++..+.+|...|.++++  +++.+++++.   |++|++||+++
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~---dg~i~vwd~~~  202 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS---DSTVRVWDVNT  202 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEET---TSCEEEEESSS
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcC---CCeEEEEECCC
Confidence            356778998877  6899999999999999999999999999999998988887  6778888764   88999999999


Q ss_pred             CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee---eeeecCc--eeEEECCCCcEEEEEECCEEE
Q 021648           88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG---LLRVQGR--PAAAYDDQGLVFAVAFGGYIR  162 (309)
Q Consensus        88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~i~  162 (309)
                      ++.+..+.+|...|.+++|++  +.+++++.||+|++||++++....   .+..+..  ....+ +...+++++.|+.|+
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~  279 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIK  279 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEE
T ss_pred             CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCeEE
Confidence            999999999999999999974  599999999999999998776542   2221221  22333 444566666789999


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  242 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  242 (309)
                      +||+++.+    .+..+.++...+.++++  +++++++++.||.|++||+.+++.+..+..   |...+.+++|  ++++
T Consensus       280 vwd~~~~~----~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~--~~~~  348 (435)
T 1p22_A          280 VWNTSTCE----FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG---HEELVRCIRF--DNKR  348 (435)
T ss_dssp             EEETTTCC----EEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEC--CSSE
T ss_pred             EEECCcCc----EEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeC---CcCcEEEEEe--cCCE
Confidence            99997643    24455567677887777  578999999999999999999998887753   5567777777  8899


Q ss_pred             EEEEcCCCcEEEEECCCCc---------eEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          243 VISGSGDGSVYAWSVRSGK---------EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       243 l~s~s~Dg~i~vwd~~~~~---------~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      |++|+.||.|++||+.+++         .+..+.+|.+.|.+++|  ++++|++++.|..+.+|++
T Consensus       349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~  412 (435)
T 1p22_A          349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDF  412 (435)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-
T ss_pred             EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEEC
Confidence            9999999999999997765         78889999999999999  7788999999855555554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.3e-35  Score=257.54  Aligned_cols=277  Identities=13%  Similarity=0.117  Sum_probs=223.0

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   89 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~   89 (309)
                      |.++|.+++|+|||++++++..++.+.+|+............|...|..++|+|+++.+++++    |+.+++||+.+++
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----dg~i~iw~~~~~~   83 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG----KGCVKVWDISHPG   83 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC----BSEEEEEETTSTT
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC----CCeEEEEECCCCC
Confidence            567899999999999999998888887776665444444457888999999999999888764    7899999998765


Q ss_pred             e---EEEee--ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee--eeeeecC--ceeEEECCCCcEEE-EEECC
Q 021648           90 Y---LRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ--GLLRVQG--RPAAAYDDQGLVFA-VAFGG  159 (309)
Q Consensus        90 ~---~~~~~--~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~-~~~~~  159 (309)
                      .   +..+.  +|...|.+++|+|+++.|++++.|+.|++||+++++..  ..+....  .....+.+++.+++ ++.++
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  163 (337)
T 1gxr_A           84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG  163 (337)
T ss_dssp             CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC
Confidence            3   33333  79999999999999999999999999999999887632  2222222  23456777765554 45689


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      .|++||++..+    ....+..+...+.+++++|+++++++++.||.|++||+.+++.+..+.    +...+..++|+|+
T Consensus       164 ~v~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~~  235 (337)
T 1gxr_A          164 NIAVWDLHNQT----LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPT  235 (337)
T ss_dssp             CEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTT
T ss_pred             cEEEEeCCCCc----eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECCC
Confidence            99999987642    234555677789999999999999999999999999999998887664    3456788999999


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          240 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      ++++++++.|+.|++||+.+++. ..+..|...+.+++|+|++++|++++.|..+.+|++
T Consensus       236 ~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~  294 (337)
T 1gxr_A          236 GEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEEC
Confidence            99999999999999999988765 466789999999999999999999998855544444

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.3e-35  Score=264.28  Aligned_cols=274  Identities=19%  Similarity=0.349  Sum_probs=223.4

Q ss_pred             cceEecCCCcce-EEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            3 VGMSFRDYNGRI-SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         3 ~~~~~~~h~~~V-~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ....+.+|.+.| .+  +++++++|++|+.|++|++||+.+++++..+.+|...|..++++  ++.+++++.   |++|+
T Consensus       110 ~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~---dg~i~  182 (445)
T 2ovr_B          110 SPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGST---DRTLK  182 (445)
T ss_dssp             CCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEET---TSCEE
T ss_pred             eeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeC---CCeEE
Confidence            456789999975 55  45568999999999999999999999999999999999999887  557777654   88999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCCcEEEEEECC
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVAFGG  159 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  159 (309)
                      +||+++++.+..+.+|...|.++.++  ++.+++++.||+|++||++++++...+..+...  ...+ +...+++++.|+
T Consensus       183 vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg  259 (445)
T 2ovr_B          183 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDF  259 (445)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEETTS
T ss_pred             EEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-CCCEEEEEcCCC
Confidence            99999999999999999999999995  578999999999999999988877666543322  2333 455677777799


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      .|++||++..+    .+..+.++...+.++++  ++.++++++.||.|++||+.+++.+..+..   +...+..+.  ++
T Consensus       260 ~i~iwd~~~~~----~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~v~~~~--~~  328 (445)
T 2ovr_B          260 MVKVWDPETET----CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG---HQSLTSGME--LK  328 (445)
T ss_dssp             CEEEEEGGGTE----EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC---CCSCEEEEE--EE
T ss_pred             EEEEEECCCCc----EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC---CcccEEEEE--Ee
Confidence            99999987532    24455667778888887  899999999999999999999998877653   334454444  46


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEeec---CCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          240 GMFVISGSGDGSVYAWSVRSGKEVASWMS---FDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~---~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      ++++++|+.||.|++||+.+++.+..+..   |...|.+++|+  ++++++|+.|..+.+|++
T Consensus       329 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~  389 (445)
T 2ovr_B          329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL  389 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence            78999999999999999999999988876   88889999996  478999988844444443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=4.4e-35  Score=258.13  Aligned_cols=283  Identities=12%  Similarity=0.151  Sum_probs=205.5

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      .+.++.+|.+.|.+++|+|||++||+|+.| .++|||+++++++.....+  .+..+++.++++.++.++.  .|++|++
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~d~~v~i   85 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTG--VKEVVHI   85 (355)
T ss_dssp             --------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECS--STTEEEE
T ss_pred             CccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEEC--CccEEEE
Confidence            345668899999999999999999999876 5799999887766554332  4777888888887765542  3789999


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc-eeeeeeeecCceeEEECCCCcEEEE--EECC
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFAV--AFGG  159 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  159 (309)
                      ||+.+++.+..+. |...|.++.++++.  ++.+ .|+.|++||+++. +....+.. ......+.+ ..++..  ..++
T Consensus        86 Wd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~-~~la~~sg~~~g  159 (355)
T 3vu4_A           86 WDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-FGGVCEFSN-GLLVYSNEFNLG  159 (355)
T ss_dssp             EETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-EEEEEEEET-TEEEEEESSCTT
T ss_pred             EECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-CCceEEEEc-cEEEEeCCCcCc
Confidence            9999999988887 77899999998764  4443 4889999999887 55544443 112233334 333332  3579


Q ss_pred             EEEEEECCCCCc------CC-----ce-EEEeCCCCCCCeEEEEccCCCEEEEEeCCCc-EEEEECCCCeEeEEeeecCC
Q 021648          160 YIRMFDARKYEK------GP-----FD-IFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPV  226 (309)
Q Consensus       160 ~i~~~d~~~~~~------~~-----~~-~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~-v~i~d~~~~~~~~~~~~~~~  226 (309)
                      .|++||++....      ..     .+ ...+.+|...+.+++|+|+|++|++++.|++ |++||+.+++.+.++... .
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g-~  238 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG-L  238 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT-T
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC-C
Confidence            999999876330      00     01 3456778889999999999999999999998 999999999998877521 2


Q ss_pred             CCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceE--EEee---------------------cCCCCCcEEEECCCee
Q 021648          227 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV--ASWM---------------------SFDTEPPVIKWTPGSL  283 (309)
Q Consensus       227 ~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~--~~~~---------------------~~~~~v~~l~~~p~~~  283 (309)
                      |...+.+++|+|+|++|++++.|++|++||+.+....  ..+.                     ........++|+|+++
T Consensus       239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~  318 (355)
T 3vu4_A          239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS  318 (355)
T ss_dssp             CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC
Confidence            5578899999999999999999999999999765321  1110                     0112347799999999


Q ss_pred             EEEEccceE--EEeee
Q 021648          284 MFVTGSSEL--SFWIP  297 (309)
Q Consensus       284 ~l~s~~~d~--~~~~~  297 (309)
                      .+++++.|.  ++|..
T Consensus       319 ~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          319 LVVVWPHTRMIETFKV  334 (355)
T ss_dssp             EEEEETTTTEEEEEEE
T ss_pred             EEEEEeCCCeEEEEEE
Confidence            999999884  44543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.1e-35  Score=274.70  Aligned_cols=287  Identities=12%  Similarity=0.109  Sum_probs=236.3

Q ss_pred             ccceEecCCCcc-eEEEEeCC--CCCEEEEeeCCCcEEEEEcCCC--------ceeeeeeccccceeEEEEecCCCEEEE
Q 021648            2 EVGMSFRDYNGR-ISSMDFHK--SSSYLVTASDDESIRLYDVTAA--------TCLKTINSKKYGVDLVCFTSHPTTVIY   70 (309)
Q Consensus         2 ~~~~~~~~h~~~-V~~i~~s~--~~~~l~t~s~D~~v~iWd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~   70 (309)
                      +....|.+|.+. |++++|+|  ++++|++|+.|++|+|||+.++        +++..+..|..++..++|+|++..+++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            567889999999 99999999  9999999999999999999755        667788888999999999999999988


Q ss_pred             EcCCC-CCceeEEEEccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeeecC-----cee
Q 021648           71 SSKNG-WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQG-----RPA  143 (309)
Q Consensus        71 ~s~~g-~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-----~~~  143 (309)
                      ++.+. ..+.|++||  .++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+++.++...+..+.     ...
T Consensus       134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~  211 (615)
T 1pgu_A          134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD  211 (615)
T ss_dssp             EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred             eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEE
Confidence            76421 015677777  6778899999999999999999988 89999999999999999888777665332     234


Q ss_pred             EEECCC-CcEEE-EEECCEEEEEECCCCCcCCceEEEe-C---CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 021648          144 AAYDDQ-GLVFA-VAFGGYIRMFDARKYEKGPFDIFSV-G---GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL  217 (309)
Q Consensus       144 ~~~~~~-~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~-~---~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~  217 (309)
                      ..+.++ +.+++ ++.++.|++||++..+    .+..+ .   .+...+.+++|+ +++++++++.|+.|++||+.+++.
T Consensus       212 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~  286 (615)
T 1pgu_A          212 VEFSPDSGEFVITVGSDRKISCFDGKSGE----FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC  286 (615)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCC----EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred             EEECCCCCCEEEEEeCCCeEEEEECCCCC----EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence            667777 66555 5568999999987643    23334 3   667789999999 999999999999999999999998


Q ss_pred             eEEeeecC-CCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEee
Q 021648          218 LSTYNVKP-VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWI  296 (309)
Q Consensus       218 ~~~~~~~~-~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~  296 (309)
                      +..+..+. .....+..+.|+ +++++++++.|+.|++||+.+++.+..+.+|...|.+++| |+   +++++.|..+.+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~  361 (615)
T 1pgu_A          287 VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIME  361 (615)
T ss_dssp             EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEE
T ss_pred             EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEE
Confidence            88776531 122455667774 9999999999999999999999999999999999999999 88   788887755555


Q ss_pred             ecCC
Q 021648          297 PDLS  300 (309)
Q Consensus       297 ~~~~  300 (309)
                      |++.
T Consensus       362 w~~~  365 (615)
T 1pgu_A          362 WSSS  365 (615)
T ss_dssp             TTTT
T ss_pred             EEch
Confidence            5543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.1e-35  Score=260.84  Aligned_cols=245  Identities=18%  Similarity=0.274  Sum_probs=198.9

Q ss_pred             CCcceEEEEeCCC----CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEec-CCCEEEEEcCCCCCceeEEEE
Q 021648           10 YNGRISSMDFHKS----SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus        10 h~~~V~~i~~s~~----~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      |...|.+++|+|+    +++|++|+.|++|++||+.+++++..+.+|...|..++|+| ++..+++++.   |+.|++||
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~---dg~i~iwd  144 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK---DHALRLWN  144 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET---TSCEEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC---CCeEEEEE
Confidence            6688999999998    67999999999999999999999999999999999999999 8888888764   88999999


Q ss_pred             ccCCceEEEe---eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee-----------------------
Q 021648           85 LHDNKYLRYF---KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-----------------------  138 (309)
Q Consensus        85 ~~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~-----------------------  138 (309)
                      +.+++.+..+   .+|...|.+++|+|++++|++++.|+.|++||+++++....+..                       
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (366)
T 3k26_A          145 IQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF  224 (366)
T ss_dssp             TTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred             eecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence            9999988888   78999999999999999999999999999999987654332210                       


Q ss_pred             -----c--CceeEEECCCCcEEEEEECCEEEEEECCCCCcC----------CceEEEeCCCCCCCeEEEEccC--CCEEE
Q 021648          139 -----Q--GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG----------PFDIFSVGGDISDANVVKFSND--GRLML  199 (309)
Q Consensus       139 -----~--~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----------~~~~~~~~~~~~~~~~v~~s~d--g~~l~  199 (309)
                           .  ......+. ...+++++.|+.|++||++.....          ...+.....+...+.+++|+|+  +++|+
T Consensus       225 ~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~  303 (366)
T 3k26_A          225 STRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA  303 (366)
T ss_dssp             EECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred             ccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence                 1  11233343 445666667899999998764320          0123445566678899999999  99999


Q ss_pred             EEeCCCcEEEEECCCCeEe----EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          200 LTTMEGHIHVLDSFRGTLL----STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       200 ~~~~dg~v~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      +++.||.|++||+.+++..    ..+..+ .+...+..++|+|++++|++++.||.|++||+.+
T Consensus       304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHH-KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EECTTSCEEEEECCSSSGGGCEEEEECCT-TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EEecCCcEEEEECCCCCCccccceEEccc-ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            9999999999999887533    233321 1257889999999999999999999999999853

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-36  Score=287.31  Aligned_cols=250  Identities=13%  Similarity=0.143  Sum_probs=203.5

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcC--CCceeeeeeccccceeEEEEecC--CCEEEEEcCCCCCce
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDES   79 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~s~~g~d~~   79 (309)
                      .+.+.+|+++|++++|+|++++|++|+.||+|+|||+.  +++++..+.+|..+|..++|+++  +..+++++.   |++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~---Dg~   78 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY---DGK   78 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET---TSC
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC---CCe
Confidence            46789999999999999999999999999999999998  56778889999999999999988  788888764   889


Q ss_pred             eEEEEccCCc--eEEEeeecccCEEEEEecCC--CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEE
Q 021648           80 LRLLSLHDNK--YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  155 (309)
Q Consensus        80 i~~~d~~~~~--~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (309)
                      |++||+.+++  .+..+.+|...|.+++|+|+  ++.+++++.||+|++||++++.......                  
T Consensus        79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~------------------  140 (753)
T 3jro_A           79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------------------  140 (753)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE------------------
T ss_pred             EEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE------------------
Confidence            9999999987  77888999999999999999  9999999999999999987653221111                  


Q ss_pred             EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc-------------CCCEEEEEeCCCcEEEEECCCCe----Ee
Q 021648          156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-------------DGRLMLLTTMEGHIHVLDSFRGT----LL  218 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~-------------dg~~l~~~~~dg~v~i~d~~~~~----~~  218 (309)
                                             ..++...+.+++++|             ++.++++++.||.|++||++++.    ..
T Consensus       141 -----------------------~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~  197 (753)
T 3jro_A          141 -----------------------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  197 (753)
T ss_dssp             -----------------------EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             -----------------------eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence                                   112334566677777             69999999999999999998763    33


Q ss_pred             EEeeecCCCCCccceEEECCC---CCEEEEEcCCCcEEEEECCCCc-----eEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648          219 STYNVKPVSRNSTLEASFSPE---GMFVISGSGDGSVYAWSVRSGK-----EVASWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~sp~---g~~l~s~s~Dg~i~vwd~~~~~-----~~~~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      ..+.   .|...+.+++|+|+   ++++++|+.||.|++||+.+++     .+.....|...+.+++|+|+++++++++.
T Consensus       198 ~~~~---~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~  274 (753)
T 3jro_A          198 STLE---GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (753)
T ss_dssp             EEEC---CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred             eeec---CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence            3332   46678999999999   9999999999999999998864     33334568889999999999999999999


Q ss_pred             eEEEeeecCC
Q 021648          291 ELSFWIPDLS  300 (309)
Q Consensus       291 d~~~~~~~~~  300 (309)
                      |..+.+|++.
T Consensus       275 Dg~I~vwd~~  284 (753)
T 3jro_A          275 DNKVTLWKEN  284 (753)
T ss_dssp             SSCEECCBCC
T ss_pred             CCEEEEEecC
Confidence            8555555544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.5e-34  Score=256.20  Aligned_cols=253  Identities=17%  Similarity=0.252  Sum_probs=203.0

Q ss_pred             ceEecC-CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            4 GMSFRD-YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         4 ~~~~~~-h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ...+.. |.+.|.+++|+|++++|++|+.|++|++||+.++++++.+.+|...+..++|  ++..+++++.   |+.|++
T Consensus       126 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---dg~i~i  200 (401)
T 4aez_A          126 SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR---SGAIHH  200 (401)
T ss_dssp             EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEET---TSEEEE
T ss_pred             eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcC---CCCEEE
Confidence            344444 8999999999999999999999999999999999999999999999999888  4567777764   889999


Q ss_pred             EEcc-CCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCC-CcEEEEEE-
Q 021648           83 LSLH-DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQ-GLVFAVAF-  157 (309)
Q Consensus        83 ~d~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~-  157 (309)
                      ||+. .+..+..+.+|.+.|.+++|+|++++|++++.|+.|++||++++++...+....  .....+.+. ..+++++. 
T Consensus       201 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g  280 (401)
T 4aez_A          201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG  280 (401)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred             EecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC
Confidence            9998 567788999999999999999999999999999999999999887766554322  335666664 45666654 


Q ss_pred             --CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEE--eCCCcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648          158 --GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT--TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  233 (309)
Q Consensus       158 --~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~  233 (309)
                        |+.|++||++..+.    ...+. +...+.+++|+|++++++++  +.||.|++||+.++......... .|...+..
T Consensus       281 s~d~~i~i~d~~~~~~----~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-~h~~~v~~  354 (401)
T 4aez_A          281 TMDKQIHFWNAATGAR----VNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-AHDTRVLY  354 (401)
T ss_dssp             TTTCEEEEEETTTCCE----EEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-CCSSCCCE
T ss_pred             CCCCEEEEEECCCCCE----EEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-CCCCCEEE
Confidence              89999999876431    22222 33578999999999999995  48999999999887766554432 35678899


Q ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceEEEee
Q 021648          234 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM  267 (309)
Q Consensus       234 ~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~  267 (309)
                      ++|+|+|++|++++.||.|++||+.+++.+....
T Consensus       355 ~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          355 SALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             EEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence            9999999999999999999999999988776543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-35  Score=266.96  Aligned_cols=271  Identities=11%  Similarity=0.070  Sum_probs=207.5

Q ss_pred             CccceEe----cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCC
Q 021648            1 MEVGMSF----RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   76 (309)
Q Consensus         1 ~~~~~~~----~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   76 (309)
                      |++++.+    +.....|.+|+|+|||+++||+|.|++||  |...++   .+.+|...+..++|+|++          .
T Consensus         1 ~~~~~~~~~~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg----------~   65 (588)
T 2j04_A            1 MKLLKDLLVDRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE----------F   65 (588)
T ss_dssp             -CCCBCEEECSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC----------C
T ss_pred             CchhHhhcccHhHhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC----------C
Confidence            4555555    46778999999999999999999999999  765554   447899999999999987          1


Q ss_pred             CceeEEEEccCCceEEEee-ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec------CceeEEECCC
Q 021648           77 DESLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ------GRPAAAYDDQ  149 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~------~~~~~~~~~~  149 (309)
                      ++.+++|+.+.   ...+. +|.+.|.+++|+|+|++|++++.||+|++||.+.  +...+...      .....+++|+
T Consensus        66 ~~~~~~~~~~~---~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPD  140 (588)
T 2j04_A           66 ENKLDFELAQQ---NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPI  140 (588)
T ss_dssp             CCTTTTSCCCS---SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSS
T ss_pred             cceEEEEeCCC---ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCC
Confidence            45555555332   22233 5688999999999999999999999999999543  33333311      1345788898


Q ss_pred             CcEEEEEE-CCEEEEEECCCCCcCC---ceEEEe----CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe---
Q 021648          150 GLVFAVAF-GGYIRMFDARKYEKGP---FDIFSV----GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL---  218 (309)
Q Consensus       150 ~~~~~~~~-~~~i~~~d~~~~~~~~---~~~~~~----~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~---  218 (309)
                      +.+++++. ||+|++||+.......   ..+..+    .+|...|.+++|||||  +++++.|++|++||+..+...   
T Consensus       141 G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~  218 (588)
T 2j04_A          141 ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVS  218 (588)
T ss_dssp             SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCE
T ss_pred             CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccce
Confidence            88777665 8999999987643211   123443    5677899999999999  888999999999999876632   


Q ss_pred             EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEE--CCCeeEEEEccceEE-Ee
Q 021648          219 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW--TPGSLMFVTGSSELS-FW  295 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~--~p~~~~l~s~~~d~~-~~  295 (309)
                      .++.  +.|...|.+++|+  |+.||+++ |++|++||+.+++......+|.+.+..++|  +||++.+++++++.. +|
T Consensus       219 ~tL~--~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw  293 (588)
T 2j04_A          219 RMIQ--NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVL  293 (588)
T ss_dssp             EEEE--CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEE
T ss_pred             eeec--ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEE
Confidence            2332  2355788999999  69999998 699999999887764444489999999999  999999999998755 77


Q ss_pred             eec
Q 021648          296 IPD  298 (309)
Q Consensus       296 ~~~  298 (309)
                      ..+
T Consensus       294 ~~d  296 (588)
T 2j04_A          294 LED  296 (588)
T ss_dssp             ESS
T ss_pred             eec
Confidence            643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.1e-35  Score=260.10  Aligned_cols=248  Identities=10%  Similarity=0.123  Sum_probs=187.4

Q ss_pred             EecCCCcceEEEEeCCCCCEEEE-----------eeCCCcEEEEEcCCCcee-eee--------eccccceeEEEEecCC
Q 021648            6 SFRDYNGRISSMDFHKSSSYLVT-----------ASDDESIRLYDVTAATCL-KTI--------NSKKYGVDLVCFTSHP   65 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~~~~~l~t-----------~s~D~~v~iWd~~~~~~~-~~~--------~~~~~~v~~~~~~~~~   65 (309)
                      .|.+|...|.++++++  +.+++           ++.|+++|+|++.+.... ...        ..+...+..++|+|++
T Consensus        68 ~l~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg  145 (365)
T 4h5i_A           68 ALEDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG  145 (365)
T ss_dssp             ECCTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred             EccCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence            4678889999887754  45554           456889999998754322 111        1223347889999999


Q ss_pred             CEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee--cC--c
Q 021648           66 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--QG--R  141 (309)
Q Consensus        66 ~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~--~~--~  141 (309)
                      +.+++++ ++.|++|++||+++++.+..+. |...|.+++|+||++++++++.|+ +++|+..+++.......  +.  .
T Consensus       146 ~~la~as-~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v  222 (365)
T 4h5i_A          146 TVAAIAS-SKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSL  222 (365)
T ss_dssp             SCEEEEE-SCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEE
T ss_pred             CEEEEEE-CCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCE
Confidence            9987765 3568999999999999888875 888999999999999999999655 55555555554432221  11  2


Q ss_pred             eeEEECCCCcEEEE-EECC----EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe
Q 021648          142 PAAAYDDQGLVFAV-AFGG----YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  216 (309)
Q Consensus       142 ~~~~~~~~~~~~~~-~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~  216 (309)
                      ..+.+.+++..++. +.++    .+++|++............+.++...+.+++|||||++|++++.|++|+|||+.+++
T Consensus       223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~  302 (365)
T 4h5i_A          223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS  302 (365)
T ss_dssp             EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred             EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence            34566777765554 4554    688898765443333345566777889999999999999999999999999999999


Q ss_pred             EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCC
Q 021648          217 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~  260 (309)
                      ++.++.  ..|...|.+++|||||++|||||.|++|+|||++..
T Consensus       303 ~~~~~~--~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          303 MSKIFK--QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEET--TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEEec--CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            887653  246788999999999999999999999999999653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-36  Score=276.14  Aligned_cols=243  Identities=15%  Similarity=0.148  Sum_probs=187.9

Q ss_pred             CCcceEEEEeCCCC---------CEEEE-------------------eeCCCcEEEEEcCCCcee----eeeecccccee
Q 021648           10 YNGRISSMDFHKSS---------SYLVT-------------------ASDDESIRLYDVTAATCL----KTINSKKYGVD   57 (309)
Q Consensus        10 h~~~V~~i~~s~~~---------~~l~t-------------------~s~D~~v~iWd~~~~~~~----~~~~~~~~~v~   57 (309)
                      +.+.|.+++|+|++         ++||+                   ++.|++|+|||+.++++.    .++.+|...|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            57788899998876         45555                   668899999999877653    34566677899


Q ss_pred             EEEEecC------CCEEEEEcCCCCCceeEEEEccCCce-----------EEEeeecccCEEEEEecCCCCeEEEecCCC
Q 021648           58 LVCFTSH------PTTVIYSSKNGWDESLRLLSLHDNKY-----------LRYFKGHHDRVVSLSLCSSKDCFISGSLDR  120 (309)
Q Consensus        58 ~~~~~~~------~~~~~~~s~~g~d~~i~~~d~~~~~~-----------~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg  120 (309)
                      .++|+|+      +..+++++.   |++|++||+..++.           ...+.+|...|++++|++++ .|++|+.||
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~---DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dg  287 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQ---EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNG  287 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEET---TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTS
T ss_pred             EEEECCCCCCCCCCceEEEEec---CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCC
Confidence            9999996      356666654   89999999976532           34788999999999999864 899999999


Q ss_pred             cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEE--EEccCC-CE
Q 021648          121 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV--KFSNDG-RL  197 (309)
Q Consensus       121 ~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v--~~s~dg-~~  197 (309)
                      +|++||++++...                                          ...+.+|...|.++  +++|+| ++
T Consensus       288 tV~lWD~~~~~~~------------------------------------------~~~~~~H~~~V~sv~~~~s~~g~~~  325 (524)
T 2j04_B          288 FVAEFDLTDPEVP------------------------------------------SFYDQVHDSYILSVSTAYSDFEDTV  325 (524)
T ss_dssp             EEEEEETTBCSSC------------------------------------------SEEEECSSSCEEEEEEECCTTSCCE
T ss_pred             EEEEEECCCCCCc------------------------------------------eEEeecccccEEEEEEEcCCCCCeE
Confidence            9999998754210                                          00112344567777  578888 89


Q ss_pred             EEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEE
Q 021648          198 MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK  277 (309)
Q Consensus       198 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~  277 (309)
                      |++++.|++|++||+++++.+..+..+. ....+.+++|+|+++.+++++.|++|++||+++++.+.++.+|...|.+|+
T Consensus       326 laS~S~D~tvklWD~~~~~~~~~~~~~~-~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva  404 (524)
T 2j04_B          326 VSTVAVDGYFYIFNPKDIATTKTTVSRF-RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIG  404 (524)
T ss_dssp             EEEEETTSEEEEECGGGHHHHCEEEEEC-SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred             EEEeccCCeEEEEECCCCCccccccccc-ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEE
Confidence            9999999999999998877655443221 112467899999999999999999999999999998888999999999999


Q ss_pred             ECCCeeEEEEccceEEEeeecC
Q 021648          278 WTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       278 ~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      |+|+++.|++|+.|.++.+|++
T Consensus       405 ~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          405 VSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             CCSSCCBCEEEETTTEEECCBS
T ss_pred             eCCCCCeEEEEECCCEEEEEec
Confidence            9999999999999855544443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.9e-34  Score=274.03  Aligned_cols=247  Identities=18%  Similarity=0.276  Sum_probs=199.2

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      .+.+.+|...|.+++|+|++++|+||+.|++|+|||+.++++++.+.+|...|.+++|+|++..+++++.   |++|++|
T Consensus       423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---D~~i~iw  499 (694)
T 3dm0_A          423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR---DRTIKLW  499 (694)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET---TSCEEEE
T ss_pred             cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC---CCEEEEE
Confidence            3578899999999999999999999999999999999999999999999999999999999999998875   8899999


Q ss_pred             EccCCceEEEe---eecccCEEEEEecCCC--CeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEE-
Q 021648           84 SLHDNKYLRYF---KGHHDRVVSLSLCSSK--DCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAV-  155 (309)
Q Consensus        84 d~~~~~~~~~~---~~h~~~v~~v~~~~~~--~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-  155 (309)
                      |+.........   .+|...|.+++|+|++  ..|++++.|++|++||+++.++...+..+.  ...+.+++++.++++ 
T Consensus       500 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg  579 (694)
T 3dm0_A          500 NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG  579 (694)
T ss_dssp             CTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            98665433322   4799999999999986  579999999999999999888776654332  345677787766555 


Q ss_pred             EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC---------
Q 021648          156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---------  226 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~---------  226 (309)
                      +.|+.|++||++..+    .+..+. ....+.+++|+|++.++++++ ++.|++||+.++..+..+.....         
T Consensus       580 ~~Dg~i~iwd~~~~~----~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  653 (694)
T 3dm0_A          580 GKDGVVLLWDLAEGK----KLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNS  653 (694)
T ss_dssp             ETTSBCEEEETTTTE----EEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC---------
T ss_pred             eCCCeEEEEECCCCc----eEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccccccc
Confidence            568999999997643    122232 235689999999999887765 56699999999988876643210         


Q ss_pred             -------CCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          227 -------SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       227 -------~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                             +...+.+++|+|||++|++|+.||+|+|||+..
T Consensus       654 ~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             -------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             ccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence                   011256789999999999999999999999853

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.1e-34  Score=276.83  Aligned_cols=285  Identities=17%  Similarity=0.228  Sum_probs=230.0

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +...++.+|.++|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...+..++|+|++..+++++.   |++|+
T Consensus        46 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~  122 (814)
T 3mkq_A           46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD---DLTVK  122 (814)
T ss_dssp             EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET---TSEEE
T ss_pred             ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcC---CCEEE
Confidence            456788899999999999999999999999999999999999999999999999999999999999988764   88999


Q ss_pred             EEEccCC-ceEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeec---CceeEEECC--CCcEEE
Q 021648           82 LLSLHDN-KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---GRPAAAYDD--QGLVFA  154 (309)
Q Consensus        82 ~~d~~~~-~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~  154 (309)
                      +||+.++ .....+.+|...|.+++|+| +++.|++++.||+|++||++++.....+...   ......+.+  ++.+++
T Consensus       123 vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  202 (814)
T 3mkq_A          123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI  202 (814)
T ss_dssp             EEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred             EEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence            9999887 67788999999999999999 8889999999999999999877655444322   233456665  555444


Q ss_pred             -EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648          155 -VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  233 (309)
Q Consensus       155 -~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~  233 (309)
                       ++.++.|++||++...    ....+.++...+.+++++|+|+++++++.||.|++||..++..+..+..   +...+..
T Consensus       203 ~~~~dg~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---~~~~v~~  275 (814)
T 3mkq_A          203 TASDDLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV---GLERSWC  275 (814)
T ss_dssp             EECTTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC---SSSSEEE
T ss_pred             EEeCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec---CCCcEEE
Confidence             4568999999987533    2445556777899999999999999999999999999999888877653   4467889


Q ss_pred             EEECCCCCE-EEEEcCCCcEEEEECCCCceEEE-------------------------------------------eecC
Q 021648          234 ASFSPEGMF-VISGSGDGSVYAWSVRSGKEVAS-------------------------------------------WMSF  269 (309)
Q Consensus       234 ~~~sp~g~~-l~s~s~Dg~i~vwd~~~~~~~~~-------------------------------------------~~~~  269 (309)
                      ++|+|+|+. +++++.|+.+.+|++........                                           +..+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (814)
T 3mkq_A          276 IATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSV  355 (814)
T ss_dssp             EEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCC
T ss_pred             EEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCC
Confidence            999999973 24444567799999765432111                                           1234


Q ss_pred             CCCCcEEEECCCeeEEEEccce-EEEee
Q 021648          270 DTEPPVIKWTPGSLMFVTGSSE-LSFWI  296 (309)
Q Consensus       270 ~~~v~~l~~~p~~~~l~s~~~d-~~~~~  296 (309)
                      ...+.+++|+|+++++++++.+ +.+|.
T Consensus       356 ~~~~~~~~~spdg~~la~~~~~~~~i~~  383 (814)
T 3mkq_A          356 DVFPQSLAHSPNGRFVTVVGDGEYVIYT  383 (814)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTEEEEEE
T ss_pred             ccCCceeEECCCCCEEEEecCCEEEEEE
Confidence            4568899999999998887742 55554

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.5e-33  Score=253.71  Aligned_cols=256  Identities=16%  Similarity=0.209  Sum_probs=196.8

Q ss_pred             EecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648            6 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      .+.+|...|++|+|+|+|++||+|+.|++|+|||+.++++++.+.+|...+.++++  ++..+++++.   |+.+++||.
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~---d~~i~~~d~  216 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSR---SGHIHHHDV  216 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEET---TSEEEEEET
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeC---CCceeEeee
Confidence            34578899999999999999999999999999999999999999999877766554  5667777654   889999998


Q ss_pred             cC-CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeee----eeec--CceeEEECC-CCcEEEEE-
Q 021648           86 HD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL----LRVQ--GRPAAAYDD-QGLVFAVA-  156 (309)
Q Consensus        86 ~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~----~~~~--~~~~~~~~~-~~~~~~~~-  156 (309)
                      .. ...+..+.+|...+..+.++|+++.+++++.|+.+++||..+++....    ....  ......+.+ ...+++++ 
T Consensus       217 ~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~  296 (420)
T 4gga_A          217 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG  296 (420)
T ss_dssp             TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE
T ss_pred             cccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe
Confidence            76 456788999999999999999999999999999999999876653211    1111  122344554 34555543 


Q ss_pred             --ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe--CCCcEEEEECCCCeEeEEeeecCCCCCccc
Q 021648          157 --FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  232 (309)
Q Consensus       157 --~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  232 (309)
                        .|+.|++||+++...    ...+. ....+.++.++|+++.+++++  .|+.|++||..+++++.++.   .|...|.
T Consensus       297 gs~D~~I~iwd~~t~~~----~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~---gH~~~V~  368 (420)
T 4gga_A          297 GTSDRHIRIWNVCSGAC----LSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK---GHTSRVL  368 (420)
T ss_dssp             CTTTCEEEEEETTTTEE----EEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC---CCSSCEE
T ss_pred             ecCCCEEEEEeCCcccc----ceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc---CCCCCEE
Confidence              379999999876431    22222 234678899999999988765  68999999999999998876   4667899


Q ss_pred             eEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCc
Q 021648          233 EASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP  274 (309)
Q Consensus       233 ~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~  274 (309)
                      +++|+|||++|+|||.|++|+|||+.+..+......+...+.
T Consensus       369 ~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~  410 (420)
T 4gga_A          369 SLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAA  410 (420)
T ss_dssp             EEEECTTSSCEEEEETTTEEEEECCSCSSCC-----------
T ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcc
Confidence            999999999999999999999999987766655555544333

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.2e-34  Score=254.99  Aligned_cols=251  Identities=14%  Similarity=0.147  Sum_probs=207.1

Q ss_pred             cceEecCCCcceEEEEeCCC----C---CEEEEeeCCCcEEEEEcCCCce-----eeeeecc-----ccceeEEEEe---
Q 021648            3 VGMSFRDYNGRISSMDFHKS----S---SYLVTASDDESIRLYDVTAATC-----LKTINSK-----KYGVDLVCFT---   62 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~----~---~~l~t~s~D~~v~iWd~~~~~~-----~~~~~~~-----~~~v~~~~~~---   62 (309)
                      +...+.+|..+|.+++|+|+    +   ++|++++.|++|++||+.++++     +..+..|     ...+..++|+   
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            57888999999999999999    9   9999999999999999998887     8888888     5789999999   


Q ss_pred             -cCCCE-EEEEcCCCCCceeEEEEccC------CceEE-----Eeee-------cccCEEEEEecCCCCeEEEecCCCcE
Q 021648           63 -SHPTT-VIYSSKNGWDESLRLLSLHD------NKYLR-----YFKG-------HHDRVVSLSLCSSKDCFISGSLDRTV  122 (309)
Q Consensus        63 -~~~~~-~~~~s~~g~d~~i~~~d~~~------~~~~~-----~~~~-------h~~~v~~v~~~~~~~~l~s~s~Dg~v  122 (309)
                       +++.. +++++.   |+.|++||+.+      ++.+.     .+.+       |...|.+++|+|++ .|++++.|+.|
T Consensus       134 ~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i  209 (397)
T 1sq9_A          134 DRLLSHRLVATDV---KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTV  209 (397)
T ss_dssp             ----CEEEEEEET---TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEE
T ss_pred             CCCCceEEEEEeC---CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcE
Confidence             99998 887764   78999999998      66666     7754       89999999999999 99999999999


Q ss_pred             EEeeCCCceeeeeeee---c---C--ceeEEECCCCcEEEE-EEC---CEEEEEECCCCCcCCceEEEeCC---------
Q 021648          123 LLWDQRAEKCQGLLRV---Q---G--RPAAAYDDQGLVFAV-AFG---GYIRMFDARKYEKGPFDIFSVGG---------  181 (309)
Q Consensus       123 ~~Wd~~~~~~~~~~~~---~---~--~~~~~~~~~~~~~~~-~~~---~~i~~~d~~~~~~~~~~~~~~~~---------  181 (309)
                      ++||++++++...+..   +   .  .....+.+++.++++ +.+   +.|++||++..+    .+..+.+         
T Consensus       210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~----~~~~~~~~~~~~~~~~  285 (397)
T 1sq9_A          210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE----RIGSLSVPTHSSQASL  285 (397)
T ss_dssp             EEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC----EEEEECBC--------
T ss_pred             EEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc----ccceeccCcccccccc
Confidence            9999998887776654   2   2  234567777665554 567   899999997643    2334444         


Q ss_pred             ----CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecC---CC---------------CCccceEEECCC
Q 021648          182 ----DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP---VS---------------RNSTLEASFSPE  239 (309)
Q Consensus       182 ----~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---~~---------------~~~~~~~~~sp~  239 (309)
                          +...+.+++|+|++++|++++.||.|++||+.+++.+..+....   .+               ...+..++|+|+
T Consensus       286 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~  365 (397)
T 1sq9_A          286 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK  365 (397)
T ss_dssp             CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred             cccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence                66789999999999999999999999999999999888876210   12               677899999999


Q ss_pred             C----------CEEEEEcCCCcEEEEECCCCc
Q 021648          240 G----------MFVISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       240 g----------~~l~s~s~Dg~i~vwd~~~~~  261 (309)
                      |          ++|++++.||.|++||+.+++
T Consensus       366 g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          366 GWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            9          799999999999999998763

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=276.33  Aligned_cols=201  Identities=10%  Similarity=0.139  Sum_probs=162.0

Q ss_pred             cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648            8 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   87 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~   87 (309)
                      .+|.+.|++++|+|++++||+|+.|++|+|||..++++...+. |..+|..++|++ ++++++++.   |++|++||+++
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~---D~~v~lWd~~~   88 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINA---KDTVYVLSLYS   88 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEET---TCEEEEEETTT
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEEC---cCeEEEEECCC
Confidence            4899999999999999999999999999999998877766554 567899999999 777777764   89999999999


Q ss_pred             CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeee-----------eee--cCceeEEECCC--CcE
Q 021648           88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL-----------LRV--QGRPAAAYDDQ--GLV  152 (309)
Q Consensus        88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~-----------~~~--~~~~~~~~~~~--~~~  152 (309)
                      ++.+..+. |.+.|++++|+|++++|++|+.||+|++||++++++...           +..  .....+.+++.  +.+
T Consensus        89 ~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l  167 (902)
T 2oaj_A           89 QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV  167 (902)
T ss_dssp             CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred             CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence            99888886 778999999999999999999999999999988765311           000  12234566664  245


Q ss_pred             EEEEECCEEEEEECCCCCcCCceEEEeCC------------------CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 021648          153 FAVAFGGYIRMFDARKYEKGPFDIFSVGG------------------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  214 (309)
Q Consensus       153 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------------------~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~  214 (309)
                      ++++.|+.| +||++..+.    ...+..                  +...+.+++|+|+|++|++++.||+|++||+.+
T Consensus       168 ~~g~~dg~v-lWd~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          168 LISYEYVTL-TYSLVENEI----KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS  242 (902)
T ss_dssp             EEECSSCEE-EEETTTTEE----EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred             EEEeCCCcE-EEECCCCce----EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence            555568999 999876421    122222                  235689999999999999999999999999988


Q ss_pred             CeEeE
Q 021648          215 GTLLS  219 (309)
Q Consensus       215 ~~~~~  219 (309)
                      ++++.
T Consensus       243 g~~~~  247 (902)
T 2oaj_A          243 GHMIM  247 (902)
T ss_dssp             CCEEE
T ss_pred             CcEEE
Confidence            87765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.5e-35  Score=263.21  Aligned_cols=266  Identities=12%  Similarity=0.066  Sum_probs=180.9

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee-----eeeeccccceeEEEEec--------CCCEEEEEcCCC
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-----KTINSKKYGVDLVCFTS--------HPTTVIYSSKNG   75 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~~~~~s~~g   75 (309)
                      .|.+.+....+++++.+||+|+.|++|||||+.++++.     ..+.+|...|..++|+|        +++.+++++.  
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~--  164 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD--  164 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET--
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC--
Confidence            34555555556667788999999999999999887653     45788999999999997        5667777764  


Q ss_pred             CCceeEEEEccCCceEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEE
Q 021648           76 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA  154 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (309)
                       |++||+||++++.++..+.+|...|.+++|+|++ ++|++++.|++|++||+++++...........     .....+.
T Consensus       165 -D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~-----~~~~~~s  238 (393)
T 4gq1_A          165 -DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV-----KNPWLLT  238 (393)
T ss_dssp             -TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C-----SCCCSEE
T ss_pred             -CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc-----ccceEEe
Confidence             9999999999998888999999999999999987 48999999999999999887654332111000     0000010


Q ss_pred             EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEc-cCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC-------
Q 021648          155 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS-NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-------  226 (309)
Q Consensus       155 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s-~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-------  226 (309)
                      ...         .    .........++...+.++.++ |||+.+++++.|+++++||+..+.....+..+..       
T Consensus       239 ~~~---------~----~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~  305 (393)
T 4gq1_A          239 LNT---------L----PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNL  305 (393)
T ss_dssp             EES---------G----GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CC
T ss_pred             ccc---------c----cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEE
Confidence            000         0    000111223455678888886 8999999999999999999987665544321100       


Q ss_pred             --------CCCccceEEECC--CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce-EEEe
Q 021648          227 --------SRNSTLEASFSP--EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE-LSFW  295 (309)
Q Consensus       227 --------~~~~~~~~~~sp--~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d-~~~~  295 (309)
                              .......+.|+|  ++.++++|+.||+|++||+.+++.+..+..|...|.+++|||||++||+++.+ +.+|
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lv  385 (393)
T 4gq1_A          306 LPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLT  385 (393)
T ss_dssp             SCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEE
T ss_pred             ccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence                    011223345555  45678889999999999999999988888999999999999999999999887 4444

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.6e-34  Score=248.92  Aligned_cols=249  Identities=15%  Similarity=0.176  Sum_probs=197.4

Q ss_pred             cCCCcceEEEEeCCC---CCEEEEeeCCCcEEEEEcCCCc-eeeeeeccccceeEEE------EecCCCEEEEEcCCCCC
Q 021648            8 RDYNGRISSMDFHKS---SSYLVTASDDESIRLYDVTAAT-CLKTINSKKYGVDLVC------FTSHPTTVIYSSKNGWD   77 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~---~~~l~t~s~D~~v~iWd~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~~~~~s~~g~d   77 (309)
                      .+|.++|.+++|+|+   +++|++|+.|++|++||+.+++ ++..+.+|...+..++      |+++++.+++++.   |
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~---d  138 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR---D  138 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET---T
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC---C
Confidence            379999999999998   6999999999999999999888 8889999999999885      4678888888764   8


Q ss_pred             ceeEEEEccCCc-eEEEeeeccc----CEEEEE----ecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC-ceeEEEC
Q 021648           78 ESLRLLSLHDNK-YLRYFKGHHD----RVVSLS----LCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYD  147 (309)
Q Consensus        78 ~~i~~~d~~~~~-~~~~~~~h~~----~v~~v~----~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~~  147 (309)
                      +.|++||+.+++ .+..+..|.+    .+.++.    |+|++++|++++.|+.|++||+++++......... .....+.
T Consensus       139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~  218 (357)
T 3i2n_A          139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFD  218 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEES
T ss_pred             CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcC
Confidence            899999999886 6778876665    899998    78899999999999999999999887654433322 3345666


Q ss_pred             C---CCc-EEEEEECCEEEEEECCCCCcC-CceEEEeCCCCCCCeEEEEccCCC-EEEEEeCCCcEEEEECCCCe-----
Q 021648          148 D---QGL-VFAVAFGGYIRMFDARKYEKG-PFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGT-----  216 (309)
Q Consensus       148 ~---~~~-~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~dg~v~i~d~~~~~-----  216 (309)
                      +   ++. +++++.++.|++||++..+.. .+......++...+.+++|+|+++ ++++++.||.|++||+..+.     
T Consensus       219 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  298 (357)
T 3i2n_A          219 RKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK  298 (357)
T ss_dssp             CSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C
T ss_pred             CCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc
Confidence            6   454 555566899999998764321 122223446778899999999998 89999999999999987543     


Q ss_pred             --------------EeEEeeecCCCCCccceEEECCCCCEEE-EEcCCCcEEEEECCCCce
Q 021648          217 --------------LLSTYNVKPVSRNSTLEASFSPEGMFVI-SGSGDGSVYAWSVRSGKE  262 (309)
Q Consensus       217 --------------~~~~~~~~~~~~~~~~~~~~sp~g~~l~-s~s~Dg~i~vwd~~~~~~  262 (309)
                                    .+..+.   .|...+.+++|+|+|++|+ +++.|+.|++||+.+.+.
T Consensus       299 ~~~g~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          299 DSEGIEMGVAGSVSLLQNVT---LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             CTTSCCCCCCCEEEEEEEEE---CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             cCCCCccccccccceeeccc---cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence                          233333   3567889999999999998 899999999999987654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-33  Score=250.95  Aligned_cols=278  Identities=11%  Similarity=0.017  Sum_probs=216.6

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc---eeeeeeccc-----------------------------------
Q 021648           12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---CLKTINSKK-----------------------------------   53 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~---~~~~~~~~~-----------------------------------   53 (309)
                      .++.+++|+|+|++|+++ .++.|++||+.+|+   .+..+..+.                                   
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            578999999999966655 58899999999998   655554322                                   


Q ss_pred             -------------------cceeEEEEecCCCEE-EEEcCCCCCceeEEEEcc--CCceEEEee--ecccCEEEEEecCC
Q 021648           54 -------------------YGVDLVCFTSHPTTV-IYSSKNGWDESLRLLSLH--DNKYLRYFK--GHHDRVVSLSLCSS  109 (309)
Q Consensus        54 -------------------~~v~~~~~~~~~~~~-~~~s~~g~d~~i~~~d~~--~~~~~~~~~--~h~~~v~~v~~~~~  109 (309)
                                         ..|.+++|+|+++.+ ++++   .|+.|++||+.  +++.+..+.  .|...|.+++|+|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACAD---SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEG---GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEEC---CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence                               258899999999986 5554   38899999999  888888886  56789999999999


Q ss_pred             CCeEEEecCCCcEEEeeCCCceeee----eeeec--CceeEEECCC---Cc-EEEEEECCEEEEEECCCCCcCCceEEE-
Q 021648          110 KDCFISGSLDRTVLLWDQRAEKCQG----LLRVQ--GRPAAAYDDQ---GL-VFAVAFGGYIRMFDARKYEKGPFDIFS-  178 (309)
Q Consensus       110 ~~~l~s~s~Dg~v~~Wd~~~~~~~~----~~~~~--~~~~~~~~~~---~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~-  178 (309)
                      +++|++++.||.+++|++.+.+...    .+..+  ....+.+.++   +. +++++.|+.|++||++....    +.. 
T Consensus       161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~----~~~~  236 (450)
T 2vdu_B          161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI----VDKW  236 (450)
T ss_dssp             SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC----EEEE
T ss_pred             CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce----eeee
Confidence            9999999999999999998776543    22222  2234566666   64 55555689999999875431    222 


Q ss_pred             eCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecC----------------------CCCCccceEEE
Q 021648          179 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP----------------------VSRNSTLEASF  236 (309)
Q Consensus       179 ~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~----------------------~~~~~~~~~~~  236 (309)
                      ..++...+.+++|+ ++++|++++.|++|++||+.+++.+..+....                      .....+..++|
T Consensus       237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence            44677889999999 99999999999999999999999887775321                      12245678999


Q ss_pred             CCCCCEEEEEc-CCCcEEEEEC--CCC---ceEEEeecCCCCCcEEEECCCeeEEEEccce--------EEEeeecC
Q 021648          237 SPEGMFVISGS-GDGSVYAWSV--RSG---KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--------LSFWIPDL  299 (309)
Q Consensus       237 sp~g~~l~s~s-~Dg~i~vwd~--~~~---~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--------~~~~~~~~  299 (309)
                      +|++++|++++ .|+.|++|++  .++   +.+..+..| ..+.+++|+|++.+++.++.+        +++|..+.
T Consensus       316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            99999999998 8999999999  555   566777777 789999999976666655532        57886654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=9.3e-34  Score=243.48  Aligned_cols=216  Identities=15%  Similarity=0.181  Sum_probs=172.2

Q ss_pred             ccceEecCCCcceEEEEeCCC--CCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecC--CCEEEEEcCCC
Q 021648            2 EVGMSFRDYNGRISSMDFHKS--SSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSH--PTTVIYSSKNG   75 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~--~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~s~~g   75 (309)
                      +++.+|.+|+++|.+++|+|+  +++|||||.|++|+|||+.+++  ++..+..|...|..++|+|+  +..+++++.  
T Consensus        44 ~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~--  121 (297)
T 2pm7_B           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS--  121 (297)
T ss_dssp             CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET--
T ss_pred             EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC--
Confidence            456789999999999999864  8999999999999999999874  56677888889999999997  677877764  


Q ss_pred             CCceeEEEEccCCc--eEEEeeecccCEEEEEecCC-------------CCeEEEecCCCcEEEeeCCCceeeeeeeecC
Q 021648           76 WDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSS-------------KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG  140 (309)
Q Consensus        76 ~d~~i~~~d~~~~~--~~~~~~~h~~~v~~v~~~~~-------------~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~  140 (309)
                       |++|++||+.++.  ....+.+|...|.+++|+|+             +++|++|+.|++|++||+++++....     
T Consensus       122 -d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~-----  195 (297)
T 2pm7_B          122 -DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV-----  195 (297)
T ss_dssp             -TSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE-----
T ss_pred             -CCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE-----
Confidence             8899999998753  24677899999999999997             46899999999999998754321000     


Q ss_pred             ceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC---CEEEEEeCCCcEEEEECCCCe-
Q 021648          141 RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG---RLMLLTTMEGHIHVLDSFRGT-  216 (309)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg---~~l~~~~~dg~v~i~d~~~~~-  216 (309)
                                                        ....+.+|...+.+++|+|++   .+|++++.|++|++||..+.. 
T Consensus       196 ----------------------------------~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~  241 (297)
T 2pm7_B          196 ----------------------------------LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG  241 (297)
T ss_dssp             ----------------------------------EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred             ----------------------------------EEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence                                              011234566778999999995   899999999999999987642 


Q ss_pred             -EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          217 -LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       217 -~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                       ..........+...+..++|+|+|++||+++.|++|++|+...
T Consensus       242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence             1111111123456788999999999999999999999999863

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=237.55  Aligned_cols=246  Identities=16%  Similarity=0.204  Sum_probs=193.6

Q ss_pred             cceEe--cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            3 VGMSF--RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         3 ~~~~~--~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      +.+.+  .+|...|++++|+|++++||||+.|++|++||+.++++++.+.+|...+.  ++++++..+++++.   ++.+
T Consensus        57 ~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~--~~~~~~~~l~s~~~---~~~~  131 (318)
T 4ggc_A           57 ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG--SLSWNSYILSSGSR---SGHI  131 (318)
T ss_dssp             EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE--EEEEETTEEEEEET---TSEE
T ss_pred             EEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEE--EeecCCCEEEEEec---CCce
Confidence            34444  57889999999999999999999999999999999999999999876655  45556677777664   7899


Q ss_pred             EEEEccCC-ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeee--e--c--CceeEEECC-CCcE
Q 021648           81 RLLSLHDN-KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--V--Q--GRPAAAYDD-QGLV  152 (309)
Q Consensus        81 ~~~d~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~--~--~--~~~~~~~~~-~~~~  152 (309)
                      ++|+...+ ..+..+.+|...+..+.+++++++|++++.|++|++||+++++......  .  .  ........+ ...+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  211 (318)
T 4ggc_A          132 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV  211 (318)
T ss_dssp             EEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTE
T ss_pred             EeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcE
Confidence            99998765 5677889999999999999999999999999999999998765432211  1  1  112233333 3344


Q ss_pred             EEEE---ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe--CCCcEEEEECCCCeEeEEeeecCCC
Q 021648          153 FAVA---FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVS  227 (309)
Q Consensus       153 ~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~  227 (309)
                      +..+   .++.|++||.+....     .....+...+..++++|++..+++++  .|+.|++||+.+++++.++.   .|
T Consensus       212 ~~~~~~~~~~~i~lwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~---gH  283 (318)
T 4ggc_A          212 LATGGGTSDRHIRIWNVCSGAC-----LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK---GH  283 (318)
T ss_dssp             EEEEECTTTCEEEEEETTTCCE-----EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC---CC
T ss_pred             EEEEecCCCCEEEEEecccccc-----cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc---CC
Confidence            4333   358999999875432     11122345688999999999887765  78999999999999998876   36


Q ss_pred             CCccceEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 021648          228 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       228 ~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~  261 (309)
                      ...|.+++|+|||++|+|||.||+|+|||+.+.+
T Consensus       284 ~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          284 TSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            6789999999999999999999999999997654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.4e-33  Score=254.78  Aligned_cols=249  Identities=12%  Similarity=0.244  Sum_probs=203.4

Q ss_pred             eEecCCCcceEEEEeCCC-CCEEEEeeCCCcEEEEEcCC----------CceeeeeeccccceeEEEEecCCC-EEEEEc
Q 021648            5 MSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTA----------ATCLKTINSKKYGVDLVCFTSHPT-TVIYSS   72 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~-~~~l~t~s~D~~v~iWd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s   72 (309)
                      ..+..|.+.|++++|+|+ +.+||+++.|++|+|||+.+          ..++..+.+|...+..++|++++. .+++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445689999999999997 68999999999999999986          567788889999999999999988 677665


Q ss_pred             CCCCCceeEEEEccCCce-------EEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeE
Q 021648           73 KNGWDESLRLLSLHDNKY-------LRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA  144 (309)
Q Consensus        73 ~~g~d~~i~~~d~~~~~~-------~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~  144 (309)
                      .   |+.|++||+..+..       ...+.+|...|.+++|+| +++.|++++.|+.|++||+++......         
T Consensus       202 ~---dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~---------  269 (430)
T 2xyi_A          202 D---DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP---------  269 (430)
T ss_dssp             T---TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSC---------
T ss_pred             C---CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcc---------
Confidence            3   88999999987432       456779999999999999 677999999999999999986531000         


Q ss_pred             EECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCC-EEEEEeCCCcEEEEECCC-CeEeEEee
Q 021648          145 AYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFR-GTLLSTYN  222 (309)
Q Consensus       145 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~dg~v~i~d~~~-~~~~~~~~  222 (309)
                                                     ...+..+...+++++|+|+++ ++++++.||.|++||+++ ...+..+.
T Consensus       270 -------------------------------~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~  318 (430)
T 2xyi_A          270 -------------------------------SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE  318 (430)
T ss_dssp             -------------------------------SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred             -------------------------------eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee
Confidence                                           001112345688999999997 788999999999999987 45555554


Q ss_pred             ecCCCCCccceEEECCCCC-EEEEEcCCCcEEEEECCC--------------CceEEEeecCCCCCcEEEECCCee-EEE
Q 021648          223 VKPVSRNSTLEASFSPEGM-FVISGSGDGSVYAWSVRS--------------GKEVASWMSFDTEPPVIKWTPGSL-MFV  286 (309)
Q Consensus       223 ~~~~~~~~~~~~~~sp~g~-~l~s~s~Dg~i~vwd~~~--------------~~~~~~~~~~~~~v~~l~~~p~~~-~l~  286 (309)
                         .|...+.+++|+|+++ +|++++.|+.|+|||+..              .+.+..+.+|...|.+++|+|+++ +++
T Consensus       319 ---~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~  395 (430)
T 2xyi_A          319 ---SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC  395 (430)
T ss_dssp             ---CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred             ---cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence               3567889999999995 699999999999999977              356677788999999999999998 899


Q ss_pred             Eccce--EEEeeecC
Q 021648          287 TGSSE--LSFWIPDL  299 (309)
Q Consensus       287 s~~~d--~~~~~~~~  299 (309)
                      +++.|  +++|.++-
T Consensus       396 s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          396 SVSEDNIMQVWQMAE  410 (430)
T ss_dssp             EEETTSEEEEEEECH
T ss_pred             EEECCCCEEEeEccc
Confidence            99887  56665543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-34  Score=260.45  Aligned_cols=265  Identities=12%  Similarity=0.206  Sum_probs=201.2

Q ss_pred             EeCCCCCEEEEeeCCCcEEEEEcCCCceeeee-eccccceeEEEEec-CCCEEEEEcCCCCCceeEEEEccC---Cc---
Q 021648           18 DFHKSSSYLVTASDDESIRLYDVTAATCLKTI-NSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHD---NK---   89 (309)
Q Consensus        18 ~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~~~~~s~~g~d~~i~~~d~~~---~~---   89 (309)
                      .|+|++..+++++      .|+ .+++.+..+ .+|...|.+++|+| ++..+++++.   |++|++||+.+   +.   
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~---dg~v~vwd~~~~~~~~~~~  103 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSD---QGVIKIWNLKEIIVGEVYS  103 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEET---TSEEEEEEHHHHHTTCCCS
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecC---CceEEEeECcccccCcccc
Confidence            4677888887776      487 567888888 88889999999999 9999988864   88999999876   43   


Q ss_pred             eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCC---CceeeeeeeecC-------------c-eeEE--ECCCC
Q 021648           90 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR---AEKCQGLLRVQG-------------R-PAAA--YDDQG  150 (309)
Q Consensus        90 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~---~~~~~~~~~~~~-------------~-~~~~--~~~~~  150 (309)
                      ....+ +|.+.|.+++|+|+++.|++++.||+|++||++   +++.........             . ....  ..+++
T Consensus       104 ~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  182 (437)
T 3gre_A          104 SSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK  182 (437)
T ss_dssp             CSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred             eeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC
Confidence            22233 599999999999999999999999999999985   333332221110             0 1111  23445


Q ss_pred             c-EEEEEECCEEEEEECCCCCcCCceEEEeCC--CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCC
Q 021648          151 L-VFAVAFGGYIRMFDARKYEKGPFDIFSVGG--DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  227 (309)
Q Consensus       151 ~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  227 (309)
                      . +++++.|+.|++||++..+.    +..+.+  +...+.+++|+|+++++++++.||.|++||++++..+..+..  .+
T Consensus       183 ~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~  256 (437)
T 3gre_A          183 SLLVALTNLSRVIIFDIRTLER----LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GD  256 (437)
T ss_dssp             EEEEEEETTSEEEEEETTTCCE----EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--TT
T ss_pred             CEEEEEeCCCeEEEEeCCCCee----eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--CC
Confidence            4 44455689999999986432    333434  567899999999999999999999999999999998887653  23


Q ss_pred             CCccceEEEC----CCCCEEEEEcCCCcEEEEECCCCceEEEeecC--------------------------CCCCcEEE
Q 021648          228 RNSTLEASFS----PEGMFVISGSGDGSVYAWSVRSGKEVASWMSF--------------------------DTEPPVIK  277 (309)
Q Consensus       228 ~~~~~~~~~s----p~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~--------------------------~~~v~~l~  277 (309)
                      ...+.+++|+    |++++|++|+.|+.|++||+.+++.+..+.+|                          ...|.+++
T Consensus       257 ~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~  336 (437)
T 3gre_A          257 HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS  336 (437)
T ss_dssp             CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE
T ss_pred             CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE
Confidence            4567888554    57889999999999999999999988877654                          34467778


Q ss_pred             ECCCeeEEEEccceEEEeeecCC
Q 021648          278 WTPGSLMFVTGSSELSFWIPDLS  300 (309)
Q Consensus       278 ~~p~~~~l~s~~~d~~~~~~~~~  300 (309)
                      |+ ++++|++++.|..+.+|++.
T Consensus       337 ~~-~~~~l~s~~~d~~i~~wd~~  358 (437)
T 3gre_A          337 VS-NDKILLTDEATSSIVMFSLN  358 (437)
T ss_dssp             EE-TTEEEEEEGGGTEEEEEETT
T ss_pred             EC-CceEEEecCCCCeEEEEECC
Confidence            87 66899999998555555443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.4e-32  Score=237.53  Aligned_cols=250  Identities=16%  Similarity=0.232  Sum_probs=201.3

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ..+++++|.+.|.+++|+|++++|++|+.|+.|++|+............+...+....+.+++..+++++.   |+.+++
T Consensus        78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---d~~~~~  154 (340)
T 4aow_A           78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR---DKTIKL  154 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET---TSCEEE
T ss_pred             eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC---CCeEEE
Confidence            35678999999999999999999999999999999999998888888888778888899999999988764   889999


Q ss_pred             EEccCCce-EEEeeecccCEEEEEecCCC--CeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEE-E
Q 021648           83 LSLHDNKY-LRYFKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAV-A  156 (309)
Q Consensus        83 ~d~~~~~~-~~~~~~h~~~v~~v~~~~~~--~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~  156 (309)
                      ||+..... ...+.+|...+..++|++++  ..+++++.|++|++||++++++...+....  ...+.+.+++.++++ +
T Consensus       155 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  234 (340)
T 4aow_A          155 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG  234 (340)
T ss_dssp             ECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence            99876543 44567899999999999764  478999999999999999988776654332  334667777765554 5


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeec------CCCCCc
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK------PVSRNS  230 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~------~~~~~~  230 (309)
                      .|+.|++||++..+    .+..+.. ...+.+++++|++.++ +++.|+.|++||+.++..+..+...      ..+...
T Consensus       235 ~Dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~  308 (340)
T 4aow_A          235 KDGQAMLWDLNEGK----HLYTLDG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ  308 (340)
T ss_dssp             TTCEEEEEETTTTE----EEEEEEC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCC
T ss_pred             CCCeEEEEEeccCc----eeeeecC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC
Confidence            68999999987643    1222322 3568899999998765 5667999999999988877665421      235567


Q ss_pred             cceEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 021648          231 TLEASFSPEGMFVISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       231 ~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~  261 (309)
                      |.+++|+|||++|++|+.||.|+|||+++|+
T Consensus       309 v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          309 CTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            8899999999999999999999999999885

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=236.60  Aligned_cols=246  Identities=19%  Similarity=0.233  Sum_probs=201.5

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC---ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCc
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE   78 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~   78 (309)
                      ++...+..|.+.|.+++|+|++++|++++.|+.+++|++...   +++..+..|...+..++|  +++.+++++.   |+
T Consensus        50 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~---d~  124 (313)
T 3odt_A           50 WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSW---DK  124 (313)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEET---TS
T ss_pred             EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeC---CC
Confidence            345678899999999999999999999999999999998753   567788889888988888  5667777764   88


Q ss_pred             eeEEEEccCCceEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeee-c--CceeEEECCCCcEEE
Q 021648           79 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRV-Q--GRPAAAYDDQGLVFA  154 (309)
Q Consensus        79 ~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~  154 (309)
                      .+++||  .++.+..+..|...+.++.++| +++.+++++.|+.|++||..  +....+.. .  ......+.+++.+++
T Consensus       125 ~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~  200 (313)
T 3odt_A          125 TAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGHFIS  200 (313)
T ss_dssp             EEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTEEEE
T ss_pred             CEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCeEEE
Confidence            999999  6778888999999999999998 89999999999999999943  33333322 1  223456667777777


Q ss_pred             EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          155 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       155 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                      ++.++.|++||++..+    .+..+.++...+.+++|+|++ .+++++.||.|++||+.+++.+..+..   +...+..+
T Consensus       201 ~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~i~~~  272 (313)
T 3odt_A          201 CSNDGLIKLVDMHTGD----VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITL---PAISIWSV  272 (313)
T ss_dssp             EETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEEC---SSSCEEEE
T ss_pred             ccCCCeEEEEECCchh----hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEec---cCceEEEE
Confidence            7889999999997643    244555677889999999999 588999999999999999998887763   45678899


Q ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCceEEE
Q 021648          235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVAS  265 (309)
Q Consensus       235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~  265 (309)
                      +|+|+++ +++++.||.|++||+.+++.+..
T Consensus       273 ~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          273 DCMSNGD-IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             EECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred             EEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence            9999998 66799999999999988766544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1e-32  Score=244.70  Aligned_cols=242  Identities=20%  Similarity=0.232  Sum_probs=187.6

Q ss_pred             cCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCceeeeeecc---ccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            8 RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSK---KYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         8 ~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      .+|.+.|.+++|+| ++++|++++.|++|++||+.+ .++..+..+   ...+..++|+|++..+++++.   |+.|++|
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~  190 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS---TGRLLLL  190 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEET---TSEEEEE
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECC---CCCEEEE
Confidence            37999999999999 789999999999999999985 555555544   367999999999999988764   8899999


Q ss_pred             EccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCC----ceeeeeeeecC-ceeEEECC-CCcEEE-E
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRA----EKCQGLLRVQG-RPAAAYDD-QGLVFA-V  155 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~----~~~~~~~~~~~-~~~~~~~~-~~~~~~-~  155 (309)
                      |+ +++.+..+.+|...|.+++|+|+++ +|++++.|++|++||+++    +.+...+.... .....+.+ ++.+++ +
T Consensus       191 d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~  269 (383)
T 3ei3_B          191 GL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT  269 (383)
T ss_dssp             ET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEE
T ss_pred             EC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEE
Confidence            99 5778899999999999999999998 899999999999999987    44444443222 33466777 665555 5


Q ss_pred             EECCEEEEEECCCCCcCCceEEEe----CCCC----------CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEe
Q 021648          156 AFGGYIRMFDARKYEKGPFDIFSV----GGDI----------SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  221 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~~~~~~~~~----~~~~----------~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~  221 (309)
                      +.|+.|++||++..+... .+...    ..+.          ..+..++++|+|++  +++.|+.|++||+.+++.+..+
T Consensus       270 ~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l  346 (383)
T 3ei3_B          270 DQRNEIRVYSSYDWSKPD-QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQL  346 (383)
T ss_dssp             ESSSEEEEEETTBTTSCS-EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred             cCCCcEEEEECCCCcccc-ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeee
Confidence            568999999998654321 11110    0111          23344667777776  7778999999999999998877


Q ss_pred             eecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          222 NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       222 ~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      ..+. +...+..++|+|+|++|++|+ |+.|++||+.+
T Consensus       347 ~~~~-~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          347 RDPN-AAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CBTT-BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             cCCC-CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            6422 334555669999999999997 99999999975

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-32  Score=238.55  Aligned_cols=252  Identities=15%  Similarity=0.145  Sum_probs=207.6

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC--CCCce
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN--GWDES   79 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~--g~d~~   79 (309)
                      +....+.+|.+.|.+++|+|++++|++++.|++|++||+.+++++..+. +...+..++|++++..+++++.+  +.++.
T Consensus        65 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~  143 (369)
T 3zwl_B           65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGS  143 (369)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred             hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCE
Confidence            4567889999999999999999999999999999999999999998888 67789999999999999887642  12389


Q ss_pred             eEEEEccCCc-----------eEEEeeeccc--CEEEEEecCCCCeEEEecCCCcEEEeeCCC-ceeeeeeeecC--cee
Q 021648           80 LRLLSLHDNK-----------YLRYFKGHHD--RVVSLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLLRVQG--RPA  143 (309)
Q Consensus        80 i~~~d~~~~~-----------~~~~~~~h~~--~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~-~~~~~~~~~~~--~~~  143 (309)
                      +++||+..++           .+..+..|..  .+.+++|+|+++.|++++.||.|++||+++ .+....+....  ...
T Consensus       144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  223 (369)
T 3zwl_B          144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD  223 (369)
T ss_dssp             EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE
T ss_pred             EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE
Confidence            9999997653           3455667777  999999999999999999999999999988 56555554332  334


Q ss_pred             EEECCCCcEEEE-EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC--------------cEE
Q 021648          144 AAYDDQGLVFAV-AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG--------------HIH  208 (309)
Q Consensus       144 ~~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg--------------~v~  208 (309)
                      ..+.+++.++++ +.|+.|++||++..+.    ..... ....+..++++|+++++++++.++              .++
T Consensus       224 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~  298 (369)
T 3zwl_B          224 MQFSPDLTYFITSSRDTNSFLVDVSTLQV----LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR  298 (369)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCE----EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred             EEECCCCCEEEEecCCceEEEEECCCCce----eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence            667777765554 4689999999976432    12222 445788999999999999999988              899


Q ss_pred             EEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 021648          209 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  262 (309)
Q Consensus       209 i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~  262 (309)
                      +||..+++.+..+..   +...+..++|+|++++|++++.||.|++|++.++..
T Consensus       299 ~~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          299 FYHKIFEEEIGRVQG---HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             EEETTTCCEEEEEEC---CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             EEecCCCcchhheec---ccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence            999999998887753   557888999999999999999999999999987543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-33  Score=247.17  Aligned_cols=258  Identities=12%  Similarity=0.109  Sum_probs=187.2

Q ss_pred             EeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc---------CC
Q 021648           18 DFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH---------DN   88 (309)
Q Consensus        18 ~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~---------~~   88 (309)
                      .+.+++.+|+||+.|++|++||+.+++++..+.  ...+..++++|.   +++++.   |+++++|+..         ++
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~---D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGP---CNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECS---TTEEEEEETTTEEEEEETTTC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecC---CCeEEEEEccCceEEeecCCc
Confidence            445678899999999999999999999888877  345666777776   666543   8899999654         55


Q ss_pred             ceEEEee-ecccCEEEEEecC--CCCeEEEecCCCcEEEeeCCCceeeeeeeec---CceeEEECCCCcEEEEE-ECCEE
Q 021648           89 KYLRYFK-GHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---GRPAAAYDDQGLVFAVA-FGGYI  161 (309)
Q Consensus        89 ~~~~~~~-~h~~~v~~v~~~~--~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~i  161 (309)
                      +.+..+. +|.+.|.+++|+|  ++++|++++.||+|++||++++++.......   ....+.+.+++.+++++ .|+.|
T Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i  194 (343)
T 3lrv_A          115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGIL  194 (343)
T ss_dssp             CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCE
T ss_pred             ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEE
Confidence            5454444 6778999999999  9999999999999999999988875443222   23456788888877765 68999


Q ss_pred             EEEECCCCCcCCceEEEeCC-CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCcc--ceEEECC
Q 021648          162 RMFDARKYEKGPFDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST--LEASFSP  238 (309)
Q Consensus       162 ~~~d~~~~~~~~~~~~~~~~-~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~sp  238 (309)
                      ++||++..+..   ...+.. |...+.+++|+|+|++|++++ ++.|++||+++++....+.....+...+  ..++|+|
T Consensus       195 ~iwd~~~~~~~---~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (343)
T 3lrv_A          195 DVYNLSSPDQA---SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD  270 (343)
T ss_dssp             EEEESSCTTSC---CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT
T ss_pred             EEEECCCCCCC---ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC
Confidence            99999875432   123344 778999999999999999999 5599999999876654433211111222  2589999


Q ss_pred             CCCEEEEEcC-CCcEEEEECCCCceEEEeecCCCCCcEEEECC---CeeEEEEccce
Q 021648          239 EGMFVISGSG-DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP---GSLMFVTGSSE  291 (309)
Q Consensus       239 ~g~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p---~~~~l~s~~~d  291 (309)
                      +|++|++++. |+.+++|++.+.......    .++..++|+|   +.+.+++++.|
T Consensus       271 ~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d  323 (343)
T 3lrv_A          271 SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGD  323 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEET
T ss_pred             CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecC
Confidence            9999999998 999999999765433222    2344555555   55555555544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=3.5e-32  Score=244.86  Aligned_cols=281  Identities=13%  Similarity=0.158  Sum_probs=218.2

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceee-----eeeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK-----TINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      ..+..+ ..+.+++|+|++.++++++.|++|++||+.+++.++     .+.+|...+..++|++++..+++++.   |+.
T Consensus       117 ~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---d~~  192 (433)
T 3bws_A          117 SRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ---ANA  192 (433)
T ss_dssp             EEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG---GTE
T ss_pred             EEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC---CCE
Confidence            344444 345689999988889999999999999999998887     44566778899999888877777653   789


Q ss_pred             eEEEEccCCceEEEeeecccCEEEEEecCCCCeE-EEecCCCcEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEEEEE
Q 021648           80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAF  157 (309)
Q Consensus        80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  157 (309)
                      |++||+.+++.+..+..|...+.+++|+|+++.+ ++++.|+.|++||+++++....+..... ....+++++..+.++.
T Consensus       193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~  272 (433)
T 3bws_A          193 VHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQ  272 (433)
T ss_dssp             EEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEE
Confidence            9999999999999999999999999999999877 5666899999999998887666554332 3456777775544443


Q ss_pred             ---------CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCE-EEEEeCCCcEEEEECCCCeEeEEeeecCCC
Q 021648          158 ---------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  227 (309)
Q Consensus       158 ---------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~-l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  227 (309)
                               ++.|++||++..+.  .....   +...+..++|+|+++. +++++.++.|++||+.+++.+..+.    +
T Consensus       273 ~~~~~~~~~dg~i~~~d~~~~~~--~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~----~  343 (433)
T 3bws_A          273 FSASNQESGGGRLGIYSMDKEKL--IDTIG---PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP----V  343 (433)
T ss_dssp             EESCTTCSCCEEEEEEETTTTEE--EEEEE---EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE----C
T ss_pred             CCCCccccCCCeEEEEECCCCcE--Eeecc---CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec----C
Confidence                     67999999875421  11111   1235678999999975 4666899999999999988877664    2


Q ss_pred             CCccceEEECCCCCEEEEEcC---------------CCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc-e
Q 021648          228 RNSTLEASFSPEGMFVISGSG---------------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS-E  291 (309)
Q Consensus       228 ~~~~~~~~~sp~g~~l~s~s~---------------Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~-d  291 (309)
                      ...+..++|+|+|+++++++.               ||.|++||+.+++.+..+..+ ..+.+++|+|+++.+++++. |
T Consensus       344 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d  422 (433)
T 3bws_A          344 FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLD  422 (433)
T ss_dssp             SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTT
T ss_pred             CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCC
Confidence            345678999999999998876               579999999999988887764 47899999999998877654 6


Q ss_pred             EEEeeecC
Q 021648          292 LSFWIPDL  299 (309)
Q Consensus       292 ~~~~~~~~  299 (309)
                      ..+.+|++
T Consensus       423 ~~i~v~~~  430 (433)
T 3bws_A          423 HQIRVYRR  430 (433)
T ss_dssp             TEEEEEEE
T ss_pred             CeEEEEEe
Confidence            44444443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-32  Score=241.39  Aligned_cols=251  Identities=11%  Similarity=0.213  Sum_probs=195.0

Q ss_pred             CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc--CCceEEEeeecccCEEEEEecCC--CCeEEEecC
Q 021648           43 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH--DNKYLRYFKGHHDRVVSLSLCSS--KDCFISGSL  118 (309)
Q Consensus        43 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~--~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~  118 (309)
                      |++++.+.+|...|.+++|+|+++.+++++.   |+.|++||+.  +++.+..+.+|.+.|++++|+++  +++|++++.
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   77 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSS---DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   77 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEET---TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEEC---CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence            4677889999999999999999999988764   8899999998  55677889999999999999977  899999999


Q ss_pred             CCcEEEeeCCCcee--eeeeeec--CceeEEECCC--Cc-EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEE
Q 021648          119 DRTVLLWDQRAEKC--QGLLRVQ--GRPAAAYDDQ--GL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF  191 (309)
Q Consensus       119 Dg~v~~Wd~~~~~~--~~~~~~~--~~~~~~~~~~--~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~  191 (309)
                      ||.|++||+++++.  ...+...  ....+.+.+.  +. +++++.|+.|++||++.....  .......+...+.+++|
T Consensus        78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~v~~~~~  155 (379)
T 3jrp_A           78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--SPIIIDAHAIGVNSASW  155 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC--CEEEEECCTTCEEEEEE
T ss_pred             CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce--eeEEecCCCCceEEEEE
Confidence            99999999988763  3333222  2234566665  54 555567899999999865322  23344566778999999


Q ss_pred             cc-------------CCCEEEEEeCCCcEEEEECCCCeEeEEe-eecCCCCCccceEEECCC---CCEEEEEcCCCcEEE
Q 021648          192 SN-------------DGRLMLLTTMEGHIHVLDSFRGTLLSTY-NVKPVSRNSTLEASFSPE---GMFVISGSGDGSVYA  254 (309)
Q Consensus       192 s~-------------dg~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~sp~---g~~l~s~s~Dg~i~v  254 (309)
                      +|             ++.++++++.||.|++||+.++...... .....|...+.+++|+|+   +++|++++.||.|++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i  235 (379)
T 3jrp_A          156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII  235 (379)
T ss_dssp             CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence            99             7999999999999999999765432211 111245678899999999   999999999999999


Q ss_pred             EECCCCce-----EEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeec
Q 021648          255 WSVRSGKE-----VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  298 (309)
Q Consensus       255 wd~~~~~~-----~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~  298 (309)
                      ||+.+++.     +.....|...+.+++|+|++++|++++.|  +++|..+
T Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          236 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             EeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            99988642     22223488899999999999999999887  6666554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.5e-32  Score=248.08  Aligned_cols=257  Identities=19%  Similarity=0.304  Sum_probs=193.5

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +..+++.+|.+.|.+++|  ++++|++|+.|++|++||+.+++++..+.+|...+..++|+  +..+++++.   |+.|+
T Consensus       164 ~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---dg~i~  236 (435)
T 1p22_A          164 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSK---DRSIA  236 (435)
T ss_dssp             CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEET---TSCEE
T ss_pred             eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeC---CCcEE
Confidence            456788999999999999  68899999999999999999999999999999889888886  457777764   88999


Q ss_pred             EEEccCCceE---EEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCCcEEEEE
Q 021648           82 LLSLHDNKYL---RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVA  156 (309)
Q Consensus        82 ~~d~~~~~~~---~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  156 (309)
                      +||+.+++.+   ..+.+|...|.++++  ++++|++++.||+|++||++++++...+..+...  ...+ ....+++++
T Consensus       237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~g~  313 (435)
T 1p22_A          237 VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-RDRLVVSGS  313 (435)
T ss_dssp             EEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-ETTEEEEEE
T ss_pred             EEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe-CCCEEEEEe
Confidence            9999887755   678899999999998  6789999999999999999998887766543322  2233 344566667


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe---------EeEEeeecCCC
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT---------LLSTYNVKPVS  227 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~---------~~~~~~~~~~~  227 (309)
                      .|+.|++||+++.+    .+..+.++...+.++++  +++++++++.||.|++||+.++.         .+..+.   .|
T Consensus       314 ~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~h  384 (435)
T 1p22_A          314 SDNTIRLWDIECGA----CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV---EH  384 (435)
T ss_dssp             TTSCEEEEETTTCC----EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC---CC
T ss_pred             CCCeEEEEECCCCC----EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc---CC
Confidence            79999999998643    24556677778888877  89999999999999999986654         555544   35


Q ss_pred             CCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECC
Q 021648          228 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP  280 (309)
Q Consensus       228 ~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p  280 (309)
                      ...+.+++|  ++++|++|+.||+|++||+.+......... ..+..++.|.+
T Consensus       385 ~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~  434 (435)
T 1p22_A          385 SGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPP-RSPSRTYTYIS  434 (435)
T ss_dssp             SSCCCCEEE--CSSCEEECCSSSEEEEEC------------------------
T ss_pred             CCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCC-CCCccceeeec
Confidence            677888999  789999999999999999988665444322 22444555543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-33  Score=250.01  Aligned_cols=241  Identities=14%  Similarity=0.101  Sum_probs=184.5

Q ss_pred             eeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC--ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEee
Q 021648           49 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD  126 (309)
Q Consensus        49 ~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd  126 (309)
                      +..+..+|.+++|+|+++.+++++.   |+.|++||+.++  +.+..+.+|.+.|.+++|+|++++|++++.|++|++||
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTA---TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCS---SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred             EecCCCcEEEEEECCCCCEEEEecC---CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            3445567999999999998887653   889999999988  77888999999999999999999999999999999999


Q ss_pred             CCCce---eeeeeeec--CceeEEECCCCc-EEEEEECCEEEEEECCCCCcCCceEEEeCC-CCCCCeEEEEccCCCEEE
Q 021648          127 QRAEK---CQGLLRVQ--GRPAAAYDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGG-DISDANVVKFSNDGRLML  199 (309)
Q Consensus       127 ~~~~~---~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~v~~s~dg~~l~  199 (309)
                      +++++   ....+...  ......+.+++. +++++.|+.|++||++..+.... ...+.. +...+.+++|+|++++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~  162 (377)
T 3dwl_C           84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV-SKHLKRPLRSTILSLDWHPNNVLLA  162 (377)
T ss_dssp             -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC-CEEECSSCCSCEEEEEECTTSSEEE
T ss_pred             cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee-eeEeecccCCCeEEEEEcCCCCEEE
Confidence            98876   22222211  123456666665 55556789999999876432111 233444 678899999999999999


Q ss_pred             EEeCCCcEEEEECCC------------------CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 021648          200 LTTMEGHIHVLDSFR------------------GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       200 ~~~~dg~v~i~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~  261 (309)
                      +++.|+.|++||+..                  ++++..+    .|...+.+++|+|+|++|++++.|++|++||+.+++
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~  238 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE  238 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence            999999999999853                  3333333    456778999999999999999999999999999988


Q ss_pred             e----EEEeecCCCCCcEEEECCCeeEEEEccce-EEEeee
Q 021648          262 E----VASWMSFDTEPPVIKWTPGSLMFVTGSSE-LSFWIP  297 (309)
Q Consensus       262 ~----~~~~~~~~~~v~~l~~~p~~~~l~s~~~d-~~~~~~  297 (309)
                      .    +..+..|...+.+++|+|++++|++++.+ ..+|..
T Consensus       239 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~  279 (377)
T 3dwl_C          239 QPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQG  279 (377)
T ss_dssp             SCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECC
T ss_pred             CcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEe
Confidence            7    78889999999999999999999999876 445543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.2e-32  Score=239.65  Aligned_cols=244  Identities=13%  Similarity=0.120  Sum_probs=199.2

Q ss_pred             eeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc--eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEee
Q 021648           49 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD  126 (309)
Q Consensus        49 ~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd  126 (309)
                      +..|..+|.+++|+|+++.+++++.   |+.|++||+.+++  .+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPN---NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECS---SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeC---CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence            3457778999999999999888754   8899999999987  8889999999999999999999999999999999999


Q ss_pred             CCCceeeeeeeec----CceeEEECCCCcEEEE-EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEE
Q 021648          127 QRAEKCQGLLRVQ----GRPAAAYDDQGLVFAV-AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT  201 (309)
Q Consensus       127 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~  201 (309)
                      +++++........    ......+.+++.++++ +.++.|++||++..............+...+.+++|+|++++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  160 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  160 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEE
Confidence            9887654443221    2234567777765555 4589999999876432111122234566789999999999999999


Q ss_pred             eCCCcEEEEECC------------------CCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 021648          202 TMEGHIHVLDSF------------------RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV  263 (309)
Q Consensus       202 ~~dg~v~i~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~  263 (309)
                      +.||.|++||+.                  .++.+..+.   .+...+..++|+|++++|++++.|+.|++||+.+++.+
T Consensus       161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  237 (372)
T 1k8k_C          161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS---SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  237 (372)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC---CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             cCCCCEEEEEcccccccccccccccccccchhhheEecC---CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence            999999999953                  566666554   35567889999999999999999999999999999999


Q ss_pred             EEeecCCCCCcEEEECCCeeEEEEccce--EEEeeecC
Q 021648          264 ASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  299 (309)
Q Consensus       264 ~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~~  299 (309)
                      ..+..|...+.+++|+|++++++++ .|  +++|..+.
T Consensus       238 ~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          238 ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9999999999999999999999888 44  77776544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.2e-32  Score=248.87  Aligned_cols=248  Identities=17%  Similarity=0.226  Sum_probs=178.2

Q ss_pred             ceEecCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCceeeeeecc--ccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            4 GMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSK--KYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      ...+.+|.+.|++|+|+| ++++|+|||.|++|+|||+.++........+  ...+..++|++++..+++++.   |+.|
T Consensus       157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---dg~i  233 (435)
T 4e54_B          157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN---VGNV  233 (435)
T ss_dssp             EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS---SSBE
T ss_pred             EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC---CCcE
Confidence            345679999999999998 6899999999999999999865443333322  335678999999999988764   8899


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeee---c--CceeEEECCCCc-EE
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRV---Q--GRPAAAYDDQGL-VF  153 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~---~--~~~~~~~~~~~~-~~  153 (309)
                      ++||+.. +.+..+.+|.+.|.+++|+|+++ +|++++.|++|++||+++.+....+..   +  ....+.+++++. ++
T Consensus       234 ~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~  312 (435)
T 4e54_B          234 ILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLL  312 (435)
T ss_dssp             EEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEE
T ss_pred             eeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeE
Confidence            9999864 56778899999999999999876 788999999999999987665433311   1  122345667665 44


Q ss_pred             EEEECCEEEEEECCCCCcCCceEEEeCCCC------CCCeEEEEccCCCEEEEEe------------CCCcEEEEECCCC
Q 021648          154 AVAFGGYIRMFDARKYEKGPFDIFSVGGDI------SDANVVKFSNDGRLMLLTT------------MEGHIHVLDSFRG  215 (309)
Q Consensus       154 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~------~~~~~v~~s~dg~~l~~~~------------~dg~v~i~d~~~~  215 (309)
                      +++.|+.|++||++..+..    ..+..+.      .......++|++..++++.            .++.|++||..++
T Consensus       313 s~~~D~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g  388 (435)
T 4e54_B          313 TTDQKSEIRVYSASQWDCP----LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG  388 (435)
T ss_dssp             EEESSSCEEEEESSSSSSE----EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC
T ss_pred             EEcCCCEEEEEECCCCccc----eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC
Confidence            5557899999998865321    1111110      1122334555555555443            3357999999999


Q ss_pred             eEeEEeeecCCCCCccceE-EECCCCCEEEEEcCCCcEEEEECCCCce
Q 021648          216 TLLSTYNVKPVSRNSTLEA-SFSPEGMFVISGSGDGSVYAWSVRSGKE  262 (309)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~-~~sp~g~~l~s~s~Dg~i~vwd~~~~~~  262 (309)
                      +++..+..  .+...+.++ +|+|+|++|++|+ |++|+|||+++++.
T Consensus       389 ~~~~~l~~--~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          389 KMMCQLYD--PESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CEEEEECC--SSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             cEEEEEeC--CCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            98876542  344566666 6999999999987 78999999998764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.8e-32  Score=242.59  Aligned_cols=247  Identities=12%  Similarity=0.237  Sum_probs=190.8

Q ss_pred             cceEecCCC------------cceEEEEeCCCC--CEEEEeeCCCcEEEEEcCCCcee----------------------
Q 021648            3 VGMSFRDYN------------GRISSMDFHKSS--SYLVTASDDESIRLYDVTAATCL----------------------   46 (309)
Q Consensus         3 ~~~~~~~h~------------~~V~~i~~s~~~--~~l~t~s~D~~v~iWd~~~~~~~----------------------   46 (309)
                      +...+.+|.            +.|.+++|+|++  .+|++++.|++|++||+.++...                      
T Consensus        73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  152 (447)
T 3dw8_B           73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL  152 (447)
T ss_dssp             EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSC
T ss_pred             EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccce
Confidence            467889998            889999999998  79999999999999999764432                      


Q ss_pred             -----------------ee-eeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC-CceEE-------EeeecccC
Q 021648           47 -----------------KT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYLR-------YFKGHHDR  100 (309)
Q Consensus        47 -----------------~~-~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~-~~~~~-------~~~~h~~~  100 (309)
                                       +. ..+|...|..++|+|+++.++++ .   |+.|++||+.+ ++.+.       .+.+|...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (447)
T 3dw8_B          153 RVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-D---DLRINLWHLEITDRSFNIVDIKPANMEELTEV  228 (447)
T ss_dssp             CCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-C---SSEEEEEETTEEEEEEEEEECCCSSGGGCCCC
T ss_pred             EeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-C---CCeEEEEECCCCCceeeeeecccccccccCcc
Confidence                             12 35688889999999999988876 3   89999999984 44444       35689999


Q ss_pred             EEEEEecCCC-CeEEEecCCCcEEEeeCCCcee----eeeeeec--------------CceeEEECCCCcEEEEEECCEE
Q 021648          101 VVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKC----QGLLRVQ--------------GRPAAAYDDQGLVFAVAFGGYI  161 (309)
Q Consensus       101 v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~----~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~i  161 (309)
                      |.+++|+|++ ++|++++.||+|++||+++++.    ...+..+              ....+.+.+++.+++++.++.|
T Consensus       229 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v  308 (447)
T 3dw8_B          229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSV  308 (447)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEE
T ss_pred             eEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeE
Confidence            9999999998 8999999999999999988775    3344332              2345677888887877777999


Q ss_pred             EEEECCCCCcCCceEEEeCCCCC---------------CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecC-
Q 021648          162 RMFDARKYEKGPFDIFSVGGDIS---------------DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-  225 (309)
Q Consensus       162 ~~~d~~~~~~~~~~~~~~~~~~~---------------~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-  225 (309)
                      ++||++.... ....+.  ++..               .+..++|+|++++|++++.||.|++||+.+++.+. +..+. 
T Consensus       309 ~iwd~~~~~~-~~~~~~--~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~  384 (447)
T 3dw8_B          309 KVWDLNMENR-PVETYQ--VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRE  384 (447)
T ss_dssp             EEEETTCCSS-CSCCEE--SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCST
T ss_pred             EEEeCCCCcc-ccceee--ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeeccc
Confidence            9999986222 222222  2211               12348999999999999999999999999887653 11110 


Q ss_pred             -----------------------------CCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648          226 -----------------------------VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       226 -----------------------------~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~  258 (309)
                                                   .....+..++|+|++++||+++.++ +++|..+
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          385 NNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             TCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             ccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                                         1124567899999999999998876 8888754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=6.1e-32  Score=231.87  Aligned_cols=243  Identities=12%  Similarity=0.121  Sum_probs=163.5

Q ss_pred             ccceEecCCCcceEEEEeCCCC----------------CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCC
Q 021648            2 EVGMSFRDYNGRISSMDFHKSS----------------SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP   65 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~----------------~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~   65 (309)
                      |..++++.|+.+|.+|.+.||-                +.|+.++.|..++.|.+..+        +...+.  .+ ++ 
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g--------~~~~v~--~l-~~-  144 (356)
T 2w18_A           77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG--------NIKAVL--GL-TK-  144 (356)
T ss_dssp             EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE--------EEEEEE--EE-TT-
T ss_pred             eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC--------CeEEEE--ec-CC-
Confidence            5567778888777777776632                22333333333333333222        111111  11 23 


Q ss_pred             CEEEEEcCCCCCceeEEEEc-cCCceEEEeeecccCEEEEEecC---CCCeEEEecCCCcEEEeeCCCceeeeeeeecCc
Q 021648           66 TTVIYSSKNGWDESLRLLSL-HDNKYLRYFKGHHDRVVSLSLCS---SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR  141 (309)
Q Consensus        66 ~~~~~~s~~g~d~~i~~~d~-~~~~~~~~~~~h~~~v~~v~~~~---~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~  141 (309)
                      ..++.++..|+|+.|++|++ .+++.+..+.+|...+..++|++   ++..|+|+|.|++||+||++++++..++.....
T Consensus       145 g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~  224 (356)
T 2w18_A          145 RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS  224 (356)
T ss_dssp             TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-
T ss_pred             CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc
Confidence            34444444567999999999 55888889999999999999999   778999999999999999999987766532110


Q ss_pred             eeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEE------------EEEeCCCcEEE
Q 021648          142 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM------------LLTTMEGHIHV  209 (309)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l------------~~~~~dg~v~i  209 (309)
                                                              +...+.+++|||+|.++            ++++.|++|++
T Consensus       225 ----------------------------------------~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl  264 (356)
T 2w18_A          225 ----------------------------------------YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV  264 (356)
T ss_dssp             ------------------------------------------CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred             ----------------------------------------ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence                                                    01134566777777765            66888999999


Q ss_pred             EECCCCeEeEEeee--cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCc-EEEECCCeeEEE
Q 021648          210 LDSFRGTLLSTYNV--KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP-VIKWTPGSLMFV  286 (309)
Q Consensus       210 ~d~~~~~~~~~~~~--~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~-~l~~~p~~~~l~  286 (309)
                      ||..++..+..+..  ...+.....  ..+.++.++|+++.|++|+|||+.+++.+.++.+|...+. +++||||+++|+
T Consensus       265 Wd~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La  342 (356)
T 2w18_A          265 INPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL  342 (356)
T ss_dssp             EETTTTEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred             EECCCCEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE
Confidence            99999988765532  122333333  3333488999999999999999999999999998887655 589999999999


Q ss_pred             EccceEEEeeec
Q 021648          287 TGSSELSFWIPD  298 (309)
Q Consensus       287 s~~~d~~~~~~~  298 (309)
                      +|+.|.++.+|+
T Consensus       343 SGS~D~TIklWd  354 (356)
T 2w18_A          343 AGQKDGNIFVYH  354 (356)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EEECCCcEEEec
Confidence            999994444443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.8e-30  Score=229.36  Aligned_cols=256  Identities=12%  Similarity=0.108  Sum_probs=203.0

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEE-EEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l-~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      ++.+.+..|. .+.+++|+|+++++ ++++.|++|++||+.++++++.+..+. .+..++|+|+++.++++..  .++.|
T Consensus        23 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~--~~~~v   98 (391)
T 1l0q_A           23 KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNM--ASSTL   98 (391)
T ss_dssp             EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEET--TTTEE
T ss_pred             eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEEC--CCCEE
Confidence            4556677665 48999999999976 788899999999999999998888766 7899999999998876542  36899


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCCeE-EEecCCCcEEEeeCCCceeeeeeeecCc-eeEEECCCCcEE-EEE-
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVF-AVA-  156 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~-  156 (309)
                      ++||+.+++.+..+..| ..+.+++|+|+++.+ ++++.|+.|++||+++++....+..... ....+.+++..+ .++ 
T Consensus        99 ~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  177 (391)
T 1l0q_A           99 SVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF  177 (391)
T ss_dssp             EEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET
T ss_pred             EEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeC
Confidence            99999999988877754 578999999999977 7889999999999999887776654432 345677777544 333 


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe---CCCcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  233 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~  233 (309)
                      .++.|++||++..+.    ...+. ....+..++|+|+|+++++++   .++.|++||+.+++.+..+..+    ..+..
T Consensus       178 ~~~~v~~~d~~~~~~----~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~  248 (391)
T 1l0q_A          178 DSMSISVIDTVTNSV----IDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG----PDPAG  248 (391)
T ss_dssp             TTTEEEEEETTTTEE----EEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC----SSEEE
T ss_pred             CCCEEEEEECCCCeE----EEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC----CCccE
Confidence            468999999876421    11121 234578899999999988887   6899999999999887766532    34567


Q ss_pred             EEECCCCCEE-EEEcCCCcEEEEECCCCceEEEeecCCC
Q 021648          234 ASFSPEGMFV-ISGSGDGSVYAWSVRSGKEVASWMSFDT  271 (309)
Q Consensus       234 ~~~sp~g~~l-~s~s~Dg~i~vwd~~~~~~~~~~~~~~~  271 (309)
                      ++|+|+|+++ ++++.|+.|++||+.+++.+..+..|..
T Consensus       249 ~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~  287 (391)
T 1l0q_A          249 IAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN  287 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             EEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence            9999999988 6779999999999999998887765543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.9e-33  Score=240.15  Aligned_cols=210  Identities=14%  Similarity=0.203  Sum_probs=167.1

Q ss_pred             cceEecCCCcceEEEEeCC--CCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecC--CCEEEEEcCCCC
Q 021648            3 VGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGW   76 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~--~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~s~~g~   76 (309)
                      +..+|.+|.++|.+++|+|  ++++|+|||.|++|+|||+.+++  ++..+.+|...|..++|+|+  +..+++++.   
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~---  125 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS---  125 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECS---
T ss_pred             EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcC---
Confidence            4567899999999999986  48999999999999999998874  56678889999999999998  567777654   


Q ss_pred             CceeEEEEccCCce---EEEeeecccCEEEEEecCC-----------------CCeEEEecCCCcEEEeeCCCceeeeee
Q 021648           77 DESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSS-----------------KDCFISGSLDRTVLLWDQRAEKCQGLL  136 (309)
Q Consensus        77 d~~i~~~d~~~~~~---~~~~~~h~~~v~~v~~~~~-----------------~~~l~s~s~Dg~v~~Wd~~~~~~~~~~  136 (309)
                      |++|++||+..+..   ...+.+|...|.++.|+|+                 +++|++|+.|++|++||++......  
T Consensus       126 D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~--  203 (316)
T 3bg1_A          126 DGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK--  203 (316)
T ss_dssp             SSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE--
T ss_pred             CCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc--
Confidence            89999999987632   3556789999999999997                 3678888888888888875331100  


Q ss_pred             eecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC----CEEEEEeCCCcEEEEEC
Q 021648          137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG----RLMLLTTMEGHIHVLDS  212 (309)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg----~~l~~~~~dg~v~i~d~  212 (309)
                                                            ....+.+|...+.+++|+|++    ++|++++.|++|++||+
T Consensus       204 --------------------------------------~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~  245 (316)
T 3bg1_A          204 --------------------------------------EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC  245 (316)
T ss_dssp             --------------------------------------EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred             --------------------------------------eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence                                                  011223455678999999987    89999999999999998


Q ss_pred             CCCe----EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648          213 FRGT----LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       213 ~~~~----~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~  258 (309)
                      .+..    ....+.   .+...+.+++|+|+|++||+++.|++|++|+..
T Consensus       246 ~~~~~~~~~~~~~~---~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          246 DDASSNTWSPKLLH---KFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             SSTTCCCCBCCEEE---ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             cCccccchhhhhhh---cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            7521    111111   245678999999999999999999999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.3e-31  Score=237.77  Aligned_cols=243  Identities=14%  Similarity=0.232  Sum_probs=193.6

Q ss_pred             ceEEEEeCCCCCE-EEEeeCCCcEEEEEcCCC----ceeeeeeccccceeEEEEec-CCCEEEEEcCCCCCceeEEEEcc
Q 021648           13 RISSMDFHKSSSY-LVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLH   86 (309)
Q Consensus        13 ~V~~i~~s~~~~~-l~t~s~D~~v~iWd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~d~~i~~~d~~   86 (309)
                      ....++++|+... +++++.||.|+|||+.+.    ..+..+.+|...|..++|+| ++..+++++.   |++|++||+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~---dg~v~vw~~~  112 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSE---DCTVMVWEIP  112 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEET---TSEEEEEECC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeC---CCeEEEEEcc
Confidence            3445778887644 456889999999999653    34556788999999999999 8888888764   8899999998


Q ss_pred             CC-------ceEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEEC
Q 021648           87 DN-------KYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  158 (309)
Q Consensus        87 ~~-------~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (309)
                      ++       +.+..+.+|...|.+++|+|++ +.|++++.|++|++||++++++...+.                     
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------------  171 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG---------------------  171 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC---------------------
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe---------------------
Confidence            87       6688999999999999999997 699999999999999998775432221                     


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCC-ccceEEEC
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN-STLEASFS  237 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~s  237 (309)
                                          ...+...+.+++++|++++|++++.||.|++||+++++.+..+..  .+.. .+..++|+
T Consensus       172 --------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~  229 (402)
T 2aq5_A          172 --------------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR--PHEGTRPVHAVFV  229 (402)
T ss_dssp             --------------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC--SSCSSSCCEEEEC
T ss_pred             --------------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc--CCCCCcceEEEEc
Confidence                                012345678999999999999999999999999999998877631  2323 36789999


Q ss_pred             CCCCEEEEE---cCCCcEEEEECCCCce-EEEe-ecCCCCCcEEEECCCeeEEE-Eccce--EEEeeecCCC
Q 021648          238 PEGMFVISG---SGDGSVYAWSVRSGKE-VASW-MSFDTEPPVIKWTPGSLMFV-TGSSE--LSFWIPDLSK  301 (309)
Q Consensus       238 p~g~~l~s~---s~Dg~i~vwd~~~~~~-~~~~-~~~~~~v~~l~~~p~~~~l~-s~~~d--~~~~~~~~~~  301 (309)
                      |++++|++|   +.|+.|++||+.+++. +... ..|...+.+++|+|+++.++ +++.|  +++|......
T Consensus       230 ~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          230 SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             STTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             CCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            999999999   8999999999988664 3332 25677899999999998775 55556  7777665443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.1e-31  Score=232.82  Aligned_cols=278  Identities=15%  Similarity=0.214  Sum_probs=187.8

Q ss_pred             cCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC---EEEEEcCCCCCceeEEE
Q 021648            8 RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLL   83 (309)
Q Consensus         8 ~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~s~~g~d~~i~~~   83 (309)
                      .+|.+.|.+++|+| ++.+|++++.|++|++||+.+++++..+. +...+..+++.+.+.   .+++++.   |+.|++|
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~  171 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTR---GPKVQLC  171 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEES---SSSEEEE
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcC---CCeEEEE
Confidence            36999999999999 77899999999999999999998888776 445678888887543   6776654   7899999


Q ss_pred             EccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCce-eeeee---------------ee--cCceeE
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEK-CQGLL---------------RV--QGRPAA  144 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~-~~~~~---------------~~--~~~~~~  144 (309)
                      |+.+++.+..+.+|.+.|.+++|+|+++ .|++++.||.|++||+++.. +...+               ..  ......
T Consensus       172 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          172 DLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             ESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             eCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence            9999999999999999999999999988 58999999999999997654 21111               00  112345


Q ss_pred             EECCCCcEEE-EEECCEEEEEECCCCCcCCceEEE-eCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648          145 AYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFS-VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  222 (309)
Q Consensus       145 ~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~  222 (309)
                      .+.+++.+++ ++.|+.|++||+++.+........ ................+..+++++.++.|++||..+++.+..+.
T Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  331 (408)
T 4a11_B          252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK  331 (408)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred             EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence            6777776554 556899999998865431110000 00111122222333445667778889999999999999888775


Q ss_pred             ecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCC-eeEEEEccce--EEEe
Q 021648          223 VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-SLMFVTGSSE--LSFW  295 (309)
Q Consensus       223 ~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~-~~~l~s~~~d--~~~~  295 (309)
                         .|...+.+++|+|++++|++++.||.|++||+.+++.+.....+.   ....+.|. ...+.+.+.+  +++|
T Consensus       332 ---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~W  401 (408)
T 4a11_B          332 ---GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDAWSSSDEEGGTSAW  401 (408)
T ss_dssp             ---CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------
T ss_pred             ---cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE---eccccccccceeecccCccCceeec
Confidence               356788899999999999999999999999999988776543322   22334453 3344444444  5555

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-32  Score=245.44  Aligned_cols=265  Identities=8%  Similarity=0.013  Sum_probs=197.0

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ++++.+.+|.+.|.+++|+|+|       .|+++++|+.+. ..+.++ .+...|..++|+|++..+++++.   |++++
T Consensus        43 ~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~-~~~~~~-~~~~~V~~vawSPdG~~LAs~s~---dg~V~  110 (588)
T 2j04_A           43 KYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ-NGLLNS-QPVCYPRVCKPSPIDDWMAVLSN---NGNVS  110 (588)
T ss_dssp             CCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS-SCSSTT-SCSCCEEEEEECSSSSCEEEEET---TSCEE
T ss_pred             cccceecCCCccEEEEEECCCC-------CcceEEEEeCCC-ceEeec-CCCCcEEEEEECCCCCEEEEEeC---CCcEE
Confidence            3456678999999999999999       566666665432 222333 33667999999999999998875   88999


Q ss_pred             EEEccCCceEEEeeeccc-----CEEEEEecCCCCeEEEecCCCcEEEeeCCCcee-------eeeeee--c----Ccee
Q 021648           82 LLSLHDNKYLRYFKGHHD-----RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-------QGLLRV--Q----GRPA  143 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~-----~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~-------~~~~~~--~----~~~~  143 (309)
                      +||.++  .+..+. |..     .|.+++|+|||++|++|+.||+|++||++++..       ..++..  .    ....
T Consensus       111 iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~s  187 (588)
T 2j04_A          111 VFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTH  187 (588)
T ss_dssp             EEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEE
T ss_pred             EEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEE
Confidence            999644  666677 765     499999999999999999999999999988753       233321  1    2335


Q ss_pred             EEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEe-CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648          144 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV-GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  222 (309)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~  222 (309)
                      .+++|++ +++++.|+.+++||+....... ....+ .++...|..++|+  |+.+++++ +++|++||...+..... .
T Consensus       188 VawSPdg-Laass~D~tVrlWd~~~~~~~~-~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~-~  261 (588)
T 2j04_A          188 IVWYEDV-LVAALSNNSVFSMTVSASSHQP-VSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL-K  261 (588)
T ss_dssp             EEEETTE-EEEEETTCCEEEECCCSSSSCC-CEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE-E
T ss_pred             EEEcCCc-EEEEeCCCeEEEEECCCCcccc-ceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE-E
Confidence            6778888 8888889999999986543210 11223 3566789999999  68888887 69999999987776432 2


Q ss_pred             ecCCCCCccceEEE--CCCCCEEEEEcCCCcEEEEECCC------Cc-----------------eEEEeecCCCCCcEEE
Q 021648          223 VKPVSRNSTLEASF--SPEGMFVISGSGDGSVYAWSVRS------GK-----------------EVASWMSFDTEPPVIK  277 (309)
Q Consensus       223 ~~~~~~~~~~~~~~--sp~g~~l~s~s~Dg~i~vwd~~~------~~-----------------~~~~~~~~~~~v~~l~  277 (309)
                      .  .|...+..++|  +||++.++++++||+ ++|....      +.                 .+..+. ++..|.+++
T Consensus       262 ~--gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va  337 (588)
T 2j04_A          262 T--GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGIS  337 (588)
T ss_dssp             C--SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEE
T ss_pred             c--CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEE
Confidence            1  36678899999  999999999999999 9999742      11                 011111 122377899


Q ss_pred             ECCCeeEEEEccce
Q 021648          278 WTPGSLMFVTGSSE  291 (309)
Q Consensus       278 ~~p~~~~l~s~~~d  291 (309)
                      |||||+.+|+++.-
T Consensus       338 ~SPdG~~lA~~~~i  351 (588)
T 2j04_A          338 LSPDGYSIAIVYDM  351 (588)
T ss_dssp             ECTTSSEEEEEEEE
T ss_pred             ECCCCCEEEEEEec
Confidence            99999999999863

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.3e-29  Score=225.00  Aligned_cols=262  Identities=14%  Similarity=0.127  Sum_probs=205.6

Q ss_pred             CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEE
Q 021648           24 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVS  103 (309)
Q Consensus        24 ~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~  103 (309)
                      .++++++.|++|++||+.++++++.+..+.. +..++|+|+++.++++.  +.|++|++||+.+++.+..+..|. .+.+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~--~~d~~i~v~d~~~~~~~~~~~~~~-~v~~   78 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVAN--AHSNDVSIIDTATNNVIATVPAGS-SPQG   78 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEE--GGGTEEEEEETTTTEEEEEEECSS-SEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEEC--CCCCeEEEEECCCCeEEEEEECCC-Cccc
Confidence            4688999999999999999999998887754 78999999999875543  238899999999999888887665 8999


Q ss_pred             EEecCCCCeE-EEecCCCcEEEeeCCCceeeeeeeecCc-eeEEECCCCcEE-EEE-ECCEEEEEECCCCCcCCceEEEe
Q 021648          104 LSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVF-AVA-FGGYIRMFDARKYEKGPFDIFSV  179 (309)
Q Consensus       104 v~~~~~~~~l-~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~-~~~~i~~~d~~~~~~~~~~~~~~  179 (309)
                      ++|+|++++| ++++.|+.|++||+++++....+..... ....+++++..+ .++ .++.|++||++..+.    ...+
T Consensus        79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~  154 (391)
T 1l0q_A           79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV----INTV  154 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEE
T ss_pred             eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE----EEEE
Confidence            9999999976 5666789999999999887766654432 345677777644 333 479999999875421    1222


Q ss_pred             CCCCCCCeEEEEccCCCEE-EEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEc---CCCcEEEE
Q 021648          180 GGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVYAW  255 (309)
Q Consensus       180 ~~~~~~~~~v~~s~dg~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s---~Dg~i~vw  255 (309)
                      ..+ ..+..++++|+|+.+ ++++.++.|++||+.+++.+..+..    ...+..++|+|+|+++++++   .|+.|++|
T Consensus       155 ~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~  229 (391)
T 1l0q_A          155 SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV----EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI  229 (391)
T ss_dssp             ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----SSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred             ecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec----CCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence            222 346889999999887 6778899999999999888776542    34567899999999999998   68999999


Q ss_pred             ECCCCceEEEeecCCCCCcEEEECCCeeEE-EEccceEEEeeecC
Q 021648          256 SVRSGKEVASWMSFDTEPPVIKWTPGSLMF-VTGSSELSFWIPDL  299 (309)
Q Consensus       256 d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l-~s~~~d~~~~~~~~  299 (309)
                      |+.+++.+..+..|. .+.+++|+|+++.+ ++++.|..+.+|++
T Consensus       230 d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          230 DTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             ETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence            999998888887765 57889999999766 67676644444443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=1.4e-30  Score=225.99  Aligned_cols=256  Identities=19%  Similarity=0.266  Sum_probs=167.7

Q ss_pred             ccceEecCCCcceEEEEeCC--CCCEEEEeeCCCcEEEEEcCCC---------ceeeeeeccccceeEEEEecC--CCEE
Q 021648            2 EVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAA---------TCLKTINSKKYGVDLVCFTSH--PTTV   68 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~--~~~~l~t~s~D~~v~iWd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~   68 (309)
                      ++...+.+|.+.|.+++|+|  ++++|++|+.|++|++||+.++         +++..+..|...+..++|+|+  +..+
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence            35677889999999999999  6999999999999999999877         557788889999999999999  8888


Q ss_pred             EEEcCCCCCceeEEEEccCCceEEEee-------------ecccCEEEEEecCC---CCeEEEecCCCcEEEeeCCCcee
Q 021648           69 IYSSKNGWDESLRLLSLHDNKYLRYFK-------------GHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRAEKC  132 (309)
Q Consensus        69 ~~~s~~g~d~~i~~~d~~~~~~~~~~~-------------~h~~~v~~v~~~~~---~~~l~s~s~Dg~v~~Wd~~~~~~  132 (309)
                      ++++.   |+.|++||+.+++.+..+.             +|...+.++.|+|+   ++.+++++.|+.+.+|+...++.
T Consensus       128 ~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~  204 (351)
T 3f3f_A          128 ACLGN---DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL  204 (351)
T ss_dssp             EEEET---TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE
T ss_pred             EEecC---CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce
Confidence            88764   8899999998877544433             68889999999997   88999999999998888766654


Q ss_pred             eeeeeecC----ceeEEECCCC-----cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC
Q 021648          133 QGLLRVQG----RPAAAYDDQG-----LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM  203 (309)
Q Consensus       133 ~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~  203 (309)
                      ........    ...+.+.+++     .+++++.|+.|++||++...    .................++....+..+..
T Consensus       205 ~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (351)
T 3f3f_A          205 HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL----SPLASEESLTNSNMFDNSADVDMDAQGRS  280 (351)
T ss_dssp             EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------
T ss_pred             eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCc----CccccCCcccceeccCCCccccccccccc
Confidence            22221111    1234455553     23333445666666654311    11111111112222223333333332222


Q ss_pred             ----CCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee
Q 021648          204 ----EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM  267 (309)
Q Consensus       204 ----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~  267 (309)
                          ...+.+|+......+..+.   .|...+.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          281 DSNTEEKAELQSNLQVELLSEHD---DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             ----------CCSEEEEEEEEEC---TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             ccccceeeeecccccccEEEEEe---cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence                2233334333334444443   466789999999999999999999999999999887665543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1e-29  Score=223.85  Aligned_cols=244  Identities=15%  Similarity=0.187  Sum_probs=171.7

Q ss_pred             EEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeE-EE
Q 021648           37 LYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-IS  115 (309)
Q Consensus        37 iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s  115 (309)
                      ||+..+.++++++..|...|.+++|+|+++.+++++    +..+++||++.++.+...  +...+..+.+.++++.+ ++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~----~~~~~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   76 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILST----LKSFEIYNVHPVAHIMSQ--EMRHLSKVRMLHRTNYVAFV   76 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEEC----SSEEEEEEETTEEEEEEE--ECSCCCEEEECTTSSEEEEE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEc----CCEEEEEecCCcceeeee--ecCCeEEEEEcCCCCEEEEE
Confidence            567777778888889999999999999999888775    345899999877655443  33357778888887766 67


Q ss_pred             ecCCCcEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC
Q 021648          116 GSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND  194 (309)
Q Consensus       116 ~s~Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d  194 (309)
                      ++.|++|++||.+++++...+..... ....+.++  .+.++.++.|++||+.........+..      ....+++++ 
T Consensus        77 ~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~~~~------~~~~~~~s~-  147 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRITDDIR------FGGVCEFSN-  147 (355)
T ss_dssp             CSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSSCCEE------EEEEEEEET-
T ss_pred             ECCccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeEEecc------CCceEEEEc-
Confidence            88899999999999988776654432 22334333  445567999999999865111111111      234567787 


Q ss_pred             CCEEEE--EeCCCcEEEEECCCCeE----------------eEEeeecCCCCCccceEEECCCCCEEEEEcCCCc-EEEE
Q 021648          195 GRLMLL--TTMEGHIHVLDSFRGTL----------------LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS-VYAW  255 (309)
Q Consensus       195 g~~l~~--~~~dg~v~i~d~~~~~~----------------~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~-i~vw  255 (309)
                       .+++.  ++.||.|++||+.++..                +..+.   .|...+.+++|+|+|++||+|+.|++ |++|
T Consensus       148 -~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw  223 (355)
T 3vu4_A          148 -GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK---AHTNPIKMVRLNRKSDMVATCSQDGTIIRVF  223 (355)
T ss_dssp             -TEEEEEESSCTTCEEEEECCC------------------CCEEEC---CCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred             -cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE---ccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence             56665  57899999999987651                33333   46778999999999999999999999 9999


Q ss_pred             ECCCCceEEEee-c-CCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          256 SVRSGKEVASWM-S-FDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       256 d~~~~~~~~~~~-~-~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      |+.+++.+.++. + |...|.+++|+|++++|++++.|..+.+|++
T Consensus       224 d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          224 KTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             ETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred             ECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence            999999999998 5 9999999999999999999999855544444

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=8.5e-30  Score=221.78  Aligned_cols=255  Identities=13%  Similarity=0.112  Sum_probs=191.6

Q ss_pred             eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc---eEEEeeecccCEEEEEecCCCC-eEEEecCCCc
Q 021648           46 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---YLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRT  121 (309)
Q Consensus        46 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~---~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~  121 (309)
                      ++...+|...|.+++|+|++..+++++.   |+.|++||+.+++   ....+.+|...|.+++|+|+++ +|++++.||.
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   80 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSW---DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEET---TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcC---CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCe
Confidence            3444578888999999999999988764   8899999998877   4566679999999999999999 9999999999


Q ss_pred             EEEeeC-CCceeeeeee--ecC-ceeEEECCCCcEEEEEECCEEEEEECCCCCcCC----c-eEEEeCCCCCCCeEEEEc
Q 021648          122 VLLWDQ-RAEKCQGLLR--VQG-RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGP----F-DIFSVGGDISDANVVKFS  192 (309)
Q Consensus       122 v~~Wd~-~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----~-~~~~~~~~~~~~~~v~~s  192 (309)
                      |++||+ ++++......  ... .....+.+...+++++.|+.|++||++......    . .+..+. +...+.+++++
T Consensus        81 i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~  159 (342)
T 1yfq_A           81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTN  159 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEEC
T ss_pred             EEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEec
Confidence            999999 8776533222  111 234455564556666778999999987511000    0 011122 45678999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCC-CeEeEEeeecCCCCCccceEEECC-CCCEEEEEcCCCcEEEEECCCC------ceEE
Q 021648          193 NDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVYAWSVRSG------KEVA  264 (309)
Q Consensus       193 ~dg~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~s~s~Dg~i~vwd~~~~------~~~~  264 (309)
                      |++  +++++.|+.|++||+.+ +........ ..+...+.+++|+| +++++++++.||.|++|++...      +...
T Consensus       160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~  236 (342)
T 1yfq_A          160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             SSE--EEEEESTTEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             CCc--EEEEeCCCeEEEEECCccccccceeee-cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence            988  88999999999999987 543211111 13456788999999 9999999999999999999887      7777


Q ss_pred             EeecCCC---------CCcEEEECCCeeEEEEccce--EEEeeec-CCCcccccc
Q 021648          265 SWMSFDT---------EPPVIKWTPGSLMFVTGSSE--LSFWIPD-LSKLGAYVG  307 (309)
Q Consensus       265 ~~~~~~~---------~v~~l~~~p~~~~l~s~~~d--~~~~~~~-~~~~~~~~~  307 (309)
                      .+..|..         .+.+++|+|++++|++++.|  +++|... ...+..+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  291 (342)
T 1yfq_A          237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence            8888765         89999999999999999988  5555443 333444444

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=9.5e-30  Score=222.99  Aligned_cols=243  Identities=13%  Similarity=0.118  Sum_probs=187.4

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEE--ecCCCEEEEEcCCCCCceeEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF--TSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ..+.+|.+.|.+++|+|++++|++++.|++|++||+.+++++. +..|...+..++|  ++++..+++++.   |+.|++
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~v  155 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSW---DKTLKF  155 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEET---TSEEEE
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccC---CCcEEE
Confidence            6788999999999999999999999999999999999988776 5567888999999  777777777764   889999


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee----cCceeEEEC-CCC----cEE
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----QGRPAAAYD-DQG----LVF  153 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~----~~~~~~~~~-~~~----~~~  153 (309)
                      ||+.+++.+..+..|. .+.++.+.+  ..+++++.|+.+++||++..........    ......... ...    .++
T Consensus       156 wd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (368)
T 3mmy_A          156 WDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFA  232 (368)
T ss_dssp             ECSSCSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEE
T ss_pred             EECCCCcEEEEEecCC-CceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEE
Confidence            9999999888888765 666666664  5788888999999999876543222111    111112111 111    266


Q ss_pred             EEEECCEEEEEECCCCCcCCceEEEeCCCCC------------CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEe
Q 021648          154 AVAFGGYIRMFDARKYEKGPFDIFSVGGDIS------------DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  221 (309)
Q Consensus       154 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~------------~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~  221 (309)
                      +++.++.|++||++..... .....+.++..            .+.+++|+|++++|++++.||.|++||+.+++++..+
T Consensus       233 ~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          233 LGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             EEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             EecCCCcEEEEecCCCCcc-ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence            7778999999999764320 11222233322            5899999999999999999999999999999988776


Q ss_pred             eecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648          222 NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       222 ~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~  258 (309)
                      .   .+...+..++|+|+|++|++++.|+..+.|++-
T Consensus       312 ~---~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          312 E---QLDQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             C---CCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             c---CCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence            5   356788999999999999999999866655543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-29  Score=244.12  Aligned_cols=216  Identities=15%  Similarity=0.170  Sum_probs=177.6

Q ss_pred             ccceEecCCCcceEEEEeCCC--CCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecC--CCEEEEEcCCC
Q 021648            2 EVGMSFRDYNGRISSMDFHKS--SSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSH--PTTVIYSSKNG   75 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~--~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~s~~g   75 (309)
                      +..+++.+|.++|.+++|+|+  +++|+||+.||+|++||+.+++  ++..+..|...|.+++|+|+  +..+++++.  
T Consensus        44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~--  121 (753)
T 3jro_A           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--  121 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--
T ss_pred             ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC--
Confidence            356788999999999999988  9999999999999999999887  67788889999999999999  888888764  


Q ss_pred             CCceeEEEEccCC--ceEEEeeecccCEEEEEecC-------------CCCeEEEecCCCcEEEeeCCCceeeeeeeecC
Q 021648           76 WDESLRLLSLHDN--KYLRYFKGHHDRVVSLSLCS-------------SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG  140 (309)
Q Consensus        76 ~d~~i~~~d~~~~--~~~~~~~~h~~~v~~v~~~~-------------~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~  140 (309)
                       |+.|++||+.++  .....+.+|...|.++.|+|             +++.|++++.||+|++||++++.....     
T Consensus       122 -dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~-----  195 (753)
T 3jro_A          122 -DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV-----  195 (753)
T ss_dssp             -TSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEE-----
T ss_pred             -CCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccce-----
Confidence             889999999876  34566789999999999999             588999999999999999865421100     


Q ss_pred             ceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC---CCEEEEEeCCCcEEEEECCCCeE
Q 021648          141 RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND---GRLMLLTTMEGHIHVLDSFRGTL  217 (309)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d---g~~l~~~~~dg~v~i~d~~~~~~  217 (309)
                                                        ....+.++...+.+++|+|+   ++++++++.||.|++||..++..
T Consensus       196 ----------------------------------~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~  241 (753)
T 3jro_A          196 ----------------------------------LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG  241 (753)
T ss_dssp             ----------------------------------EEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred             ----------------------------------eeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence                                              01122345567899999999   99999999999999999987642


Q ss_pred             eE--EeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          218 LS--TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       218 ~~--~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      ..  .......+...+.+++|+|+|+++++|+.||.|++||+.+
T Consensus       242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            11  1111223556788999999999999999999999999974

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-28  Score=222.05  Aligned_cols=237  Identities=11%  Similarity=0.157  Sum_probs=184.7

Q ss_pred             cceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc---eEEEeee----------------------------------
Q 021648           54 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---YLRYFKG----------------------------------   96 (309)
Q Consensus        54 ~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~---~~~~~~~----------------------------------   96 (309)
                      .++.+++|+++++.+++++    ++.|++||+++++   .+..+..                                  
T Consensus         5 ~p~~~v~~s~dg~~l~~~~----~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAII----KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK   80 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEE----TTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEe----CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence            4678899999999666554    5689999999998   6655553                                  


Q ss_pred             --------------------cccCEEEEEecCCCCeE-EEecCCCcEEEeeCC--Cceeeeeeee---c-CceeEEECCC
Q 021648           97 --------------------HHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQR--AEKCQGLLRV---Q-GRPAAAYDDQ  149 (309)
Q Consensus        97 --------------------h~~~v~~v~~~~~~~~l-~s~s~Dg~v~~Wd~~--~~~~~~~~~~---~-~~~~~~~~~~  149 (309)
                                          |.+.|++++|+|++++| ++++.||+|++||+.  ++++...+..   . ....+.+.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred             CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence                                33479999999999986 899999999999998  7766665532   1 2235677787


Q ss_pred             CcEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC---CCEEEEEeCCCcEEEEECCCCeEeEEeeecC
Q 021648          150 GLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND---GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP  225 (309)
Q Consensus       150 ~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d---g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  225 (309)
                      +.+++++ .++.+++|++............+.++...+.+++|+|+   +++|++++.|++|++||+.++..+..+.  .
T Consensus       161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~  238 (450)
T 2vdu_B          161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL--F  238 (450)
T ss_dssp             SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC--C
T ss_pred             CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee--c
Confidence            7655554 57999999987654321011233346678999999999   9999999999999999999888776543  2


Q ss_pred             CCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeec-------------------------CCCCCcEEEECC
Q 021648          226 VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS-------------------------FDTEPPVIKWTP  280 (309)
Q Consensus       226 ~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-------------------------~~~~v~~l~~~p  280 (309)
                      .|...+.+++|+ ++++|++++.|++|++||+.+++.+..+..                         ....+..++|+|
T Consensus       239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  317 (450)
T 2vdu_B          239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK  317 (450)
T ss_dssp             CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred             CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence            356788999999 999999999999999999999998887753                         234678899999


Q ss_pred             CeeEEEEcc-ce--EEEeee
Q 021648          281 GSLMFVTGS-SE--LSFWIP  297 (309)
Q Consensus       281 ~~~~l~s~~-~d--~~~~~~  297 (309)
                      +++++++++ .+  +++|..
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEe
Confidence            999988887 55  666655

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1e-29  Score=226.80  Aligned_cols=222  Identities=9%  Similarity=0.035  Sum_probs=155.2

Q ss_pred             ceEecCCCcceEEEEeCC--------CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC-EEEEEcCC
Q 021648            4 GMSFRDYNGRISSMDFHK--------SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKN   74 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~--------~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~   74 (309)
                      +..+.+|++.|++|+|+|        |+++|||||.|++|||||+.++.++..+..|...+..++|+|++. .+++++. 
T Consensus       129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-  207 (393)
T 4gq1_A          129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER-  207 (393)
T ss_dssp             ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET-
T ss_pred             ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCC-
Confidence            345789999999999998        889999999999999999998888888888888999999999876 4555543 


Q ss_pred             CCCceeEEEEccCCceEEE-------------------------eeecccCEEEEEec-CCCCeEEEecCCCcEEEeeCC
Q 021648           75 GWDESLRLLSLHDNKYLRY-------------------------FKGHHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQR  128 (309)
Q Consensus        75 g~d~~i~~~d~~~~~~~~~-------------------------~~~h~~~v~~v~~~-~~~~~l~s~s~Dg~v~~Wd~~  128 (309)
                        |++|++||+.+++....                         ..+|...+.++.|+ +|++.+++++.|+++++||++
T Consensus       208 --d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~  285 (393)
T 4gq1_A          208 --NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF  285 (393)
T ss_dssp             --TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-
T ss_pred             --CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc
Confidence              89999999987754322                         34688889999987 799999999999999999998


Q ss_pred             CceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc--CCCEEEEEeCCCc
Q 021648          129 AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN--DGRLMLLTTMEGH  206 (309)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg~~l~~~~~dg~  206 (309)
                      .++....+....                    ..++.....  +.  ..........+ ...++|  ++.++++++.||+
T Consensus       286 ~~~~~~~l~~~~--------------------~~~~~~~~~--~~--~~~~~~~~~~~-~~~~~~~~~~~~~~sgs~Dg~  340 (393)
T 4gq1_A          286 ANNDYNEISDST--------------------MKLGPKNLL--PN--VQGISLFPSLL-GACPHPRYMDYFATAHSQHGL  340 (393)
T ss_dssp             --------------------------------------CCS--CS--EEEECSSCCSS-CCEECSSCTTEEEEEETTTTE
T ss_pred             cCCCCceEeeec--------------------CccccEEEc--cc--cccccccCcce-eEEEccCCCCEEEEEECCCCE
Confidence            765443322110                    011111000  00  11111111122 233443  4556777888999


Q ss_pred             EEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEEC
Q 021648          207 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  257 (309)
Q Consensus       207 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~  257 (309)
                      |++||..++........   +..+|.+++|||||++||+++.|| +.+|.+
T Consensus       341 V~lwd~~~~~~~~~~~~---~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          341 IQLINTYEKDSNSIPIQ---LGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EEEEETTCTTCCEEEEE---CSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEEEECCCCcEEEEecC---CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            99999999887765543   456789999999999999999777 666654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.4e-28  Score=211.09  Aligned_cols=202  Identities=9%  Similarity=0.110  Sum_probs=148.2

Q ss_pred             CCcceEEEEeCCC----CCEEEEee--------------------CCCcEEEEEc-CCCceeeeeeccccceeEEEEec-
Q 021648           10 YNGRISSMDFHKS----SSYLVTAS--------------------DDESIRLYDV-TAATCLKTINSKKYGVDLVCFTS-   63 (309)
Q Consensus        10 h~~~V~~i~~s~~----~~~l~t~s--------------------~D~~v~iWd~-~~~~~~~~~~~~~~~v~~~~~~~-   63 (309)
                      |..+|.+++|+||    +.++++++                    .|++|++|++ .+|+.+..+..|...+..++|++ 
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~  189 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV  189 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred             cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence            5567888888888    77777655                    3999999999 45888888888888899999998 


Q ss_pred             --CCCEEEEEcCCCCCceeEEEEccCCceEEEeeeccc---CEEEEEecCCCCeE------------EEecCCCcEEEee
Q 021648           64 --HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD---RVVSLSLCSSKDCF------------ISGSLDRTVLLWD  126 (309)
Q Consensus        64 --~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~---~v~~v~~~~~~~~l------------~s~s~Dg~v~~Wd  126 (309)
                        +++.+++++.   |++||+||+++++.++++.+|..   .+.+++|+|+++++            +||+.|+++++||
T Consensus       190 ~g~~~~LaSgS~---D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd  266 (356)
T 2w18_A          190 QGMQEALLGTTI---MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVIN  266 (356)
T ss_dssp             ETSTTEEEEEET---TSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEE
T ss_pred             CCCCceEEEecC---CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence              6677887764   99999999999999999987654   57778999999877            4566677777777


Q ss_pred             CCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCc
Q 021648          127 QRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH  206 (309)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~  206 (309)
                      ..++++...+..                          .+            ..++...  .+..+.++.++++++.|++
T Consensus       267 ~~tgk~l~v~~~--------------------------~~------------p~Gh~~~--~lsg~~sg~~lASgS~DgT  306 (356)
T 2w18_A          267 PKTTLSVGVMLY--------------------------CL------------PPGQAGR--FLEGDVKDHCAAAILTSGT  306 (356)
T ss_dssp             TTTTEEEEEEEE--------------------------CC------------CTTCCCC--EEEEEEETTEEEEEETTSC
T ss_pred             CCCCEEEEEEEe--------------------------ec------------cCCCcce--eEccccCCCEEEEEcCCCc
Confidence            766654322110                          00            0111111  2334445889999999999


Q ss_pred             EEEEECCCCeEeEEeeecCCCCCccc-eEEECCCCCEEEEEcCCCcEEEEEC
Q 021648          207 IHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSPEGMFVISGSGDGSVYAWSV  257 (309)
Q Consensus       207 v~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~sp~g~~l~s~s~Dg~i~vwd~  257 (309)
                      |+|||+.+++.+.++..   |...+. .++|||||++|+||+.|++|+|||+
T Consensus       307 IkIWDl~tGk~l~tL~g---H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          307 IAIWDLLLGQCTALLPP---VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEETTTCSEEEEECC---C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEECCCCcEEEEecC---CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            99999999999988753   333344 5899999999999999999999996

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=5.6e-28  Score=217.11  Aligned_cols=286  Identities=13%  Similarity=0.098  Sum_probs=208.9

Q ss_pred             CCcceEEEEeCCCCC-EEEEee----CCC----cEEEEEc--CCCcee--eeeeccccceeEEEEec-------------
Q 021648           10 YNGRISSMDFHKSSS-YLVTAS----DDE----SIRLYDV--TAATCL--KTINSKKYGVDLVCFTS-------------   63 (309)
Q Consensus        10 h~~~V~~i~~s~~~~-~l~t~s----~D~----~v~iWd~--~~~~~~--~~~~~~~~~v~~~~~~~-------------   63 (309)
                      +...+....|.+.|. ++++|+    .||    +++|||+  .+++++  ..+.+|...+..+++.+             
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            345677788888774 566887    467    9999999  899887  45777777666666553             


Q ss_pred             -CCCEEEEEcCCCCC---ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCC---cEEEeeCCCceeeeee
Q 021648           64 -HPTTVIYSSKNGWD---ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR---TVLLWDQRAEKCQGLL  136 (309)
Q Consensus        64 -~~~~~~~~s~~g~d---~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg---~v~~Wd~~~~~~~~~~  136 (309)
                       .+..+++++..+.+   ++|++||+.. ...+.+.+|.+.+.+++|+||++.|++++.|+   .|++||++++++....
T Consensus       141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~  219 (415)
T 2hqs_A          141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA  219 (415)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE
T ss_pred             cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee
Confidence             15566666543223   7999999974 45778889999999999999999999999885   9999999988765433


Q ss_pred             eecC-ceeEEECCCCcEEE-EEE-C--CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC-CC--cEE
Q 021648          137 RVQG-RPAAAYDDQGLVFA-VAF-G--GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EG--HIH  208 (309)
Q Consensus       137 ~~~~-~~~~~~~~~~~~~~-~~~-~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~-dg--~v~  208 (309)
                      .... .....++|++..++ ++. +  ..|++||++..+     ...+..+...+..++|+|||+.|+.++. ++  .|+
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~  294 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-----IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY  294 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-----EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-----EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEE
Confidence            3222 33567888887665 332 3  469999987533     2344455567889999999999988876 44  677


Q ss_pred             EEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC---CcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEE
Q 021648          209 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF  285 (309)
Q Consensus       209 i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l  285 (309)
                      +||+.+++... +.   .+...+..++|+|||++|++++.+   ..|++||+.+++. ..+..+. .+.+++|+||++.|
T Consensus       295 ~~d~~~~~~~~-l~---~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l  368 (415)
T 2hqs_A          295 KVNINGGAPQR-IT---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMV  368 (415)
T ss_dssp             EEETTSSCCEE-CC---CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEE
T ss_pred             EEECCCCCEEE-Ee---cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEE
Confidence            88988776432 21   133456789999999999998865   5899999998876 4455554 78999999999999


Q ss_pred             EEccceE---EEeeecC--CCcccccc
Q 021648          286 VTGSSEL---SFWIPDL--SKLGAYVG  307 (309)
Q Consensus       286 ~s~~~d~---~~~~~~~--~~~~~~~~  307 (309)
                      +.++.+.   .+|.+++  ..+..+.+
T Consensus       369 ~~~s~~~~~~~l~~~d~~g~~~~~l~~  395 (415)
T 2hqs_A          369 IYSSSQGMGSVLNLVSTDGRFKARLPA  395 (415)
T ss_dssp             EEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred             EEEEcCCCccEEEEEECCCCcEEEeeC
Confidence            8888653   6666654  33444433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.1e-27  Score=215.44  Aligned_cols=242  Identities=12%  Similarity=0.185  Sum_probs=195.2

Q ss_pred             EecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648            6 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      .+.+|.+.|.+++|+|+++++++++.|++|++||+.+++++..+..+...+..++|+++++.++++..  .|+.|++||+
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~i~~~d~  241 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNW--ISEDISVIDR  241 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEET--TTTEEEEEET
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEec--CCCcEEEEEC
Confidence            35689999999999999999999999999999999999999999888888999999999998866542  3789999999


Q ss_pred             cCCceEEEeeecccCEEEEEecCCCCeEEEec--------CCCcEEEeeCCCceeeeeeeecC-ceeEEECCCCc-EEEE
Q 021648           86 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS--------LDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGL-VFAV  155 (309)
Q Consensus        86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s--------~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~  155 (309)
                      .+++.+..+..+ ..+.+++|+|+++.+++++        .|+.|++||+++++....+.... .....+.+++. ++.+
T Consensus       242 ~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  320 (433)
T 3bws_A          242 KTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVS  320 (433)
T ss_dssp             TTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEE
T ss_pred             CCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEE
Confidence            999888877765 4589999999999999888        48999999999887766553322 23456777774 4444


Q ss_pred             -EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC---------------CCcEEEEECCCCeEeE
Q 021648          156 -AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---------------EGHIHVLDSFRGTLLS  219 (309)
Q Consensus       156 -~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~---------------dg~v~i~d~~~~~~~~  219 (309)
                       ..++.|++||+...+.    ...+. ....+..++++|+|+++++++.               ||.|++||..+++.+.
T Consensus       321 ~~~~~~v~v~d~~~~~~----~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~  395 (433)
T 3bws_A          321 DMCCSKIEVYDLKEKKV----QKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE  395 (433)
T ss_dssp             ETTTTEEEEEETTTTEE----EEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred             ecCCCEEEEEECCCCcE----EEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence             4579999999875321    11221 3356789999999998888776               5799999999999887


Q ss_pred             EeeecCCCCCccceEEECCCCCEEEEEcC-CCcEEEEECCC
Q 021648          220 TYNVKPVSRNSTLEASFSPEGMFVISGSG-DGSVYAWSVRS  259 (309)
Q Consensus       220 ~~~~~~~~~~~~~~~~~sp~g~~l~s~s~-Dg~i~vwd~~~  259 (309)
                      .+..    ...+..++|+|+|++|++++. |+.|++|++..
T Consensus       396 ~~~~----~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          396 FWEA----GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEC----SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EecC----CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            7653    245678999999999998864 99999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=4.5e-28  Score=218.63  Aligned_cols=210  Identities=22%  Similarity=0.292  Sum_probs=170.9

Q ss_pred             ccceEecCCCcceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCce-------eeeeeccccceeEEEEec-CCCEEEEEc
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATC-------LKTINSKKYGVDLVCFTS-HPTTVIYSS   72 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~~~~~s   72 (309)
                      +...++.+|.+.|.+++|+|++. +|++|+.|++|++||+.++..       ...+..|...|..++|+| ++..+++++
T Consensus       172 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~  251 (430)
T 2xyi_A          172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA  251 (430)
T ss_dssp             CCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe
Confidence            45678899999999999999998 999999999999999987432       355668888899999999 455566654


Q ss_pred             CCCCCceeEEEEccCC---ceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCce-eeeeeeecCceeEEEC
Q 021648           73 KNGWDESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAYD  147 (309)
Q Consensus        73 ~~g~d~~i~~~d~~~~---~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~-~~~~~~~~~~~~~~~~  147 (309)
                      .   |+.|++||+.++   +.+..+..|...|++++|+|+++ .|++++.||+|++||+++.. +..             
T Consensus       252 ~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~-------------  315 (430)
T 2xyi_A          252 D---DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH-------------  315 (430)
T ss_dssp             T---TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE-------------
T ss_pred             C---CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE-------------
Confidence            3   889999999876   57778889999999999999887 68899999999999987632 111             


Q ss_pred             CCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCC-EEEEEeCCCcEEEEECCCC-----------
Q 021648          148 DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRG-----------  215 (309)
Q Consensus       148 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~dg~v~i~d~~~~-----------  215 (309)
                                                    .+..+...+.+++|+|+++ ++++++.|+.|++||+...           
T Consensus       316 ------------------------------~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  365 (430)
T 2xyi_A          316 ------------------------------SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED  365 (430)
T ss_dssp             ------------------------------EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHH
T ss_pred             ------------------------------EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccccc
Confidence                                          1112345688999999995 7899999999999998762           


Q ss_pred             ---eEeEEeeecCCCCCccceEEECCCCC-EEEEEcCCCcEEEEECCCC
Q 021648          216 ---TLLSTYNVKPVSRNSTLEASFSPEGM-FVISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       216 ---~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~s~s~Dg~i~vwd~~~~  260 (309)
                         .++..+   ..|...+..++|+|+++ +|++++.|+.|+||++.+.
T Consensus       366 ~~~~~~~~~---~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          366 GPPELLFIH---GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CCTTEEEEC---CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCcceEEEc---CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence               333332   34567789999999999 9999999999999999753

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8e-28  Score=210.47  Aligned_cols=235  Identities=11%  Similarity=0.058  Sum_probs=174.8

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcC---------CCceeeeee-ccccceeEEEEec--CCCEEEEEcCCCCCc
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVT---------AATCLKTIN-SKKYGVDLVCFTS--HPTTVIYSSKNGWDE   78 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~~~~~s~~g~d~   78 (309)
                      .+.|.++.|+|+   ++|++.|++|++|+..         +++.++.+. .|...|..++++|  +++.+++++.   |+
T Consensus        76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~---dg  149 (343)
T 3lrv_A           76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADN---RG  149 (343)
T ss_dssp             EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEET---TC
T ss_pred             cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeC---CC
Confidence            467788889987   9999999999999765         444444444 4556799999999  9999888764   88


Q ss_pred             eeEEEEccCCceEEEeee-cccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee-eeeee-c--CceeEEECCCCcEE
Q 021648           79 SLRLLSLHDNKYLRYFKG-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ-GLLRV-Q--GRPAAAYDDQGLVF  153 (309)
Q Consensus        79 ~i~~~d~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~-~~~~~-~--~~~~~~~~~~~~~~  153 (309)
                      +|++||+++++.+..+.. |...|.+++|+|++++|++|+.||+|++||+++++.. ..+.. +  ....+.+.+++.++
T Consensus       150 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l  229 (343)
T 3lrv_A          150 TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWM  229 (343)
T ss_dssp             CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEE
T ss_pred             cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEE
Confidence            999999999988777644 4558999999999999999999999999999988766 44444 2  23456788888888


Q ss_pred             EEEECCEEEEEECCCCCcCCceEEEeCCCCCCC--eEEEEccCCCEEEEEeC-CCcEEEEECCCCeEeEEeeecCCCCCc
Q 021648          154 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA--NVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNS  230 (309)
Q Consensus       154 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~v~~s~dg~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~  230 (309)
                      +++.++.|++||+++.+.. ..+..+..+...+  .+++|+|+|+++++++. |+.|++|+..+....-..       ..
T Consensus       230 ~s~~~~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-------~~  301 (343)
T 3lrv_A          230 VVECDQTVVCFDLRKDVGT-LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-------DE  301 (343)
T ss_dssp             EEEESSBEEEEETTSSTTC-BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-------EE
T ss_pred             EEEeCCeEEEEEcCCCCcc-eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-------cC
Confidence            8877889999999875421 1111111111222  46999999999999998 999999998654322111       23


Q ss_pred             cceEEECC---CCCEEEEEcCCCcEEEEECCC
Q 021648          231 TLEASFSP---EGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       231 ~~~~~~sp---~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      +..++|+|   +++.+++++.|+.++++-...
T Consensus       302 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          302 ESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             EEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             ceeEecCccccccceeEEEecCCceEEEEecC
Confidence            34567888   899999999999999886543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=3.9e-26  Score=211.64  Aligned_cols=263  Identities=16%  Similarity=0.182  Sum_probs=202.2

Q ss_pred             EeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc--cCCceEEEee
Q 021648           18 DFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL--HDNKYLRYFK   95 (309)
Q Consensus        18 ~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~--~~~~~~~~~~   95 (309)
                      .|+|++.++++++.|++|++||..+++++.++..+.. +..++|+|+++++++++.   |++|++||+  .+++.+..+.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~---d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGR---DARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEET---TSEEEEEETTSSSCEEEEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECC---CCeEEEEECcCCCCcEEEEEe
Confidence            4889999999999999999999999999999985433 788999999999998874   689999999  8888888887


Q ss_pred             ecccCEEEEEecC----CCCeEEEec-CCCcEEEeeCCCceeeeeeeecC-------------ceeEEECCCCc-EEEE-
Q 021648           96 GHHDRVVSLSLCS----SKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQG-------------RPAAAYDDQGL-VFAV-  155 (309)
Q Consensus        96 ~h~~~v~~v~~~~----~~~~l~s~s-~Dg~v~~Wd~~~~~~~~~~~~~~-------------~~~~~~~~~~~-~~~~-  155 (309)
                       +...+..++|+|    |++++++++ .|++|.+||..+.++...+....             .....+++++. ++.. 
T Consensus       220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  298 (543)
T ss_dssp             -CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             -cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence             445679999999    999998887 58999999999888877665421             12345555443 3333 


Q ss_pred             EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEE-EeCCCcEEEEECCCCeEeEEeeecCC-CCCccce
Q 021648          156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFRGTLLSTYNVKPV-SRNSTLE  233 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~~~-~~~~~~~  233 (309)
                      ..++.|.+||....+.  ..+..+. .......+.|+|+|+++++ +..+++|.+||..+++++..+..... |......
T Consensus       299 ~~~g~i~vvd~~~~~~--l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~  375 (543)
T 1nir_A          299 KETGKVLLVNYKDIDN--LTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN  375 (543)
T ss_dssp             TTTTEEEEEECTTSSS--CEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE
T ss_pred             CCCCeEEEEEecCCCc--ceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc
Confidence            3468999999876432  1211221 1234567899999997665 45689999999999998887764221 2222222


Q ss_pred             EEECCC-CCEEEEEc-CCCcEEEEECCC-------CceEEEeecCCCCCcEEEECCCeeEEEEcc
Q 021648          234 ASFSPE-GMFVISGS-GDGSVYAWSVRS-------GKEVASWMSFDTEPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       234 ~~~sp~-g~~l~s~s-~Dg~i~vwd~~~-------~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~  289 (309)
                      + ++|+ |+.++|++ .|++|.+||+.+       ++.+.++..|...+..++|||+++.|.+++
T Consensus       376 ~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          376 F-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             c-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence            2 5787 66677775 689999999998       888999999998889999999999998876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=6.4e-27  Score=210.22  Aligned_cols=265  Identities=12%  Similarity=0.114  Sum_probs=201.9

Q ss_pred             eEecCCCcceEEEEeCC--------------CCCEEEEeeCC------CcEEEEEcCCCceeeeeeccccceeEEEEecC
Q 021648            5 MSFRDYNGRISSMDFHK--------------SSSYLVTASDD------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSH   64 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~--------------~~~~l~t~s~D------~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~   64 (309)
                      +++.+|...+..+++++              .+.+++.++.+      ++|++||++ +.+.+.+..|...+..++|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCC
Confidence            55778888888777764              26677777664      799999997 5667788888888999999999


Q ss_pred             CCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEE-EecCCCc--EEEeeCCCceeeeeeeecC-
Q 021648           65 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRT--VLLWDQRAEKCQGLLRVQG-  140 (309)
Q Consensus        65 ~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~Dg~--v~~Wd~~~~~~~~~~~~~~-  140 (309)
                      ++.+++++..+.+..|++||+.+++.. .+..|...+.+++|+||++.|+ +++.|+.  |.+||+++++......... 
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~  268 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN  268 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSC
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCc
Confidence            999998875433469999999998765 5778889999999999999877 7777665  9999998876643322222 


Q ss_pred             ceeEEECCCCcEEEEEEC--C--EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC---CcEEEEECC
Q 021648          141 RPAAAYDDQGLVFAVAFG--G--YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSF  213 (309)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~--~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d---g~v~i~d~~  213 (309)
                      .....+++++..++.+.+  +  .|.+||+...+.     ..+..+...+..++|||||++|++++.+   ..|++||+.
T Consensus       269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~  343 (415)
T 2hqs_A          269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  343 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred             ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-----EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence            334677888876655543  3  688888765331     1222333456789999999999988764   589999998


Q ss_pred             CCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC---cEEEEECCCCceEEEeecCCCCCcEEEECCCe
Q 021648          214 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS  282 (309)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~  282 (309)
                      +++... +..   + ..+..++|+|||++|++++.|+   .|++||+. ++....+..|++.|.+++|+|-.
T Consensus       344 ~~~~~~-l~~---~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          344 TGGVQV-LSS---T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             TCCEEE-CCC---S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred             CCCEEE-ecC---C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence            887642 221   2 2677899999999999998887   79999996 55677888999999999999964

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=1.3e-25  Score=208.24  Aligned_cols=288  Identities=11%  Similarity=0.078  Sum_probs=210.7

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEc--CCCceeeeeeccccceeEEEEec----CCCEEEEEcCCC
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV--TAATCLKTINSKKYGVDLVCFTS----HPTTVIYSSKNG   75 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~s~~g   75 (309)
                      +++.++..+.. +..++|+|||++|++++.|++|++||+  .+++++.++..+. .+..++|+|    +++++++++.  
T Consensus       170 ~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~-~p~~va~sp~~~~dg~~l~v~~~--  245 (543)
T 1nir_A          170 KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI-EARSVESSKFKGYEDRYTIAGAY--  245 (543)
T ss_dssp             CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEE--
T ss_pred             eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC-CcceEEeCCCcCCCCCEEEEEEc--
Confidence            45666763333 889999999999999999999999999  8899988888544 468899999    9999887752  


Q ss_pred             CCceeEEEEccCCceEEEeee----------ccc-CEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeee--eeeecC-
Q 021648           76 WDESLRLLSLHDNKYLRYFKG----------HHD-RVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQG--LLRVQG-  140 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~~~~~~~----------h~~-~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~--~~~~~~-  140 (309)
                      ++++|.+||..+++.++.+..          |.+ .+.++.++|+++ ++++...+++|.+||+.+.+...  .+.... 
T Consensus       246 ~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~  325 (543)
T 1nir_A          246 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPF  325 (543)
T ss_dssp             ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSS
T ss_pred             cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcC
Confidence            378999999999998888764          333 789999999765 56777889999999998765433  222111 


Q ss_pred             ceeEEECCCCcEEEEE--ECCEEEEEECCCCCcCCceEEEeCC--CCCCCeEEEEccC-CCEEEEEe-CCCcEEEEECCC
Q 021648          141 RPAAAYDDQGLVFAVA--FGGYIRMFDARKYEKGPFDIFSVGG--DISDANVVKFSND-GRLMLLTT-MEGHIHVLDSFR  214 (309)
Q Consensus       141 ~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~v~~s~d-g~~l~~~~-~dg~v~i~d~~~  214 (309)
                      .....+++++.++.++  .+++|.+||+.+.+.  ........  |......+ ++|+ |..++++. .|++|.+||..+
T Consensus       326 ~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l--~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          326 LHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL--SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             CCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             ccCceECCCCCEEEEEecCCCeEEEEECCCCeE--EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence            2235778888755443  368999999876431  11222211  22222222 4777 67777775 689999999988


Q ss_pred             -------CeEeEEeeecCCCCCccceEEECCCCCEEEEEc-------CCCcEEEEECCCCceE-EEe--------ecCCC
Q 021648          215 -------GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-------GDGSVYAWSVRSGKEV-ASW--------MSFDT  271 (309)
Q Consensus       215 -------~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s-------~Dg~i~vwd~~~~~~~-~~~--------~~~~~  271 (309)
                             .+++.++..   +...+..++|+|+|++|++++       .+++|.|||+.+++.+ ..+        ..+..
T Consensus       403 ~~~~~~~~~~v~~l~~---~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~  479 (543)
T 1nir_A          403 KNHPQYAWKKVAELQG---QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK  479 (543)
T ss_dssp             TTCTTTBTSEEEEEEC---SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC
T ss_pred             CCCchhcCeEEEEEEc---CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCC
Confidence                   788887764   334566799999999999997       2789999999998876 443        34567


Q ss_pred             CCcEEEECCCeeEEEEc-----c--ceEEEeeecC
Q 021648          272 EPPVIKWTPGSLMFVTG-----S--SELSFWIPDL  299 (309)
Q Consensus       272 ~v~~l~~~p~~~~l~s~-----~--~d~~~~~~~~  299 (309)
                      .+..++|+|+|+.+..+     +  +.+.+|...-
T Consensus       480 ~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t  514 (543)
T 1nir_A          480 RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  514 (543)
T ss_dssp             EEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             ceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence            78899999999877643     1  2366766543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=1.9e-25  Score=193.74  Aligned_cols=280  Identities=12%  Similarity=0.092  Sum_probs=197.4

Q ss_pred             EeCCCCCE-EEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce-EEEee
Q 021648           18 DFHKSSSY-LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-LRYFK   95 (309)
Q Consensus        18 ~~s~~~~~-l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~-~~~~~   95 (309)
                      .|.+++++ +++++.|++|++||..+++.+..+..+...+ .++|+|+++.+++++..  ++.|.+||+++++. ...+.
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~--~~~i~~~d~~~~~~~~~~~~   80 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDF--CQTLVQIETQLEPPKVVAIQ   80 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEEST--TCEEEEEECSSSSCEEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCC--CCeEEEEECCCCceeEEecc
Confidence            45665554 7899999999999999999988877665556 89999999987776532  67999999999887 77777


Q ss_pred             ecccCEEEEEecCCCCeEEEecCCC---cEEEeeCCCceeeeeeeecCc-eeEEECCCCc-EEEEEE-CCE-EEEEECCC
Q 021648           96 GHHDRVVSLSLCSSKDCFISGSLDR---TVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGL-VFAVAF-GGY-IRMFDARK  168 (309)
Q Consensus        96 ~h~~~v~~v~~~~~~~~l~s~s~Dg---~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~-~~~-i~~~d~~~  168 (309)
                      .+..+..+++|+|++++++++..++   .|.+||+++++....+..... ....+++++. ++++.. ++. +.+|++..
T Consensus        81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            7777766699999999988655553   899999998887766654433 3467777775 555544 477 99999864


Q ss_pred             CCcC-CceEEEeCCCCCCCeEEEEccCCCEE-EEEeCCCcEEEEECCCCeE---eEEeeecCCCCCccceEEECCCCCEE
Q 021648          169 YEKG-PFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTL---LSTYNVKPVSRNSTLEASFSPEGMFV  243 (309)
Q Consensus       169 ~~~~-~~~~~~~~~~~~~~~~v~~s~dg~~l-~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~sp~g~~l  243 (309)
                      .... ....... ........++|+|||+++ ++...++.|++||+.+++.   +..+..    ...+..++|+|||+++
T Consensus       161 ~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~~~~~spdg~~l  235 (331)
T 3u4y_A          161 DGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT----NNLPGTIVVSRDGSTV  235 (331)
T ss_dssp             TCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC----SSCCCCEEECTTSSEE
T ss_pred             CCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC----CCCCceEEECCCCCEE
Confidence            2110 0001111 122346889999999855 4555789999999998887   555542    2445679999999977


Q ss_pred             EEEc-CCCcEEEEECCCCce--EEEeecC----CCC---CcEEEECCCeeEEEEccc-e--EEEeeecCCCcccc
Q 021648          244 ISGS-GDGSVYAWSVRSGKE--VASWMSF----DTE---PPVIKWTPGSLMFVTGSS-E--LSFWIPDLSKLGAY  305 (309)
Q Consensus       244 ~s~s-~Dg~i~vwd~~~~~~--~~~~~~~----~~~---v~~l~~~p~~~~l~s~~~-d--~~~~~~~~~~~~~~  305 (309)
                      +.+. .++.|.+||+.+++.  +..+..+    ...   ...++|+||++.|..++. +  +.+|..+...++.+
T Consensus       236 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~  310 (331)
T 3u4y_A          236 YVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYV  310 (331)
T ss_dssp             EEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccce
Confidence            6664 578999999998876  4444322    222   245899999987654443 3  66776655444443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=1.3e-25  Score=215.54  Aligned_cols=279  Identities=10%  Similarity=0.059  Sum_probs=206.6

Q ss_pred             CcceEEEEeCCCCCEEEEeeC-CC-----cEEEEEcCCCceeeeeecccc------------------------ceeEEE
Q 021648           11 NGRISSMDFHKSSSYLVTASD-DE-----SIRLYDVTAATCLKTINSKKY------------------------GVDLVC   60 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~-D~-----~v~iWd~~~~~~~~~~~~~~~------------------------~v~~~~   60 (309)
                      ...|.+++|+|||++|++++. |+     +|++||+.+++..+.+..+..                        .+..++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456899999999999999998 88     999999999988777765432                        378899


Q ss_pred             EecCCCEEEEEcCCCCCceeEEEEccCCc--eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee
Q 021648           61 FTSHPTTVIYSSKNGWDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV  138 (309)
Q Consensus        61 ~~~~~~~~~~~s~~g~d~~i~~~d~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~  138 (309)
                      |+|+++.+++++    +++|++||+.+++  .+..+..|...+..+.|+|||++|+.++ ++.|.+||+.+++.......
T Consensus       116 ~SpDg~~l~~~~----~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~  190 (741)
T 2ecf_A          116 WSPDAQRLLFPL----GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTAD  190 (741)
T ss_dssp             ECTTSSEEEEEE----TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCC
T ss_pred             ECCCCCEEEEEe----CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccC
Confidence            999999999886    3789999999873  4556778888999999999999999887 56999999988765543322


Q ss_pred             cC------------------ceeEEECCCCcEEEE-EECC---------------------------------EEEEEEC
Q 021648          139 QG------------------RPAAAYDDQGLVFAV-AFGG---------------------------------YIRMFDA  166 (309)
Q Consensus       139 ~~------------------~~~~~~~~~~~~~~~-~~~~---------------------------------~i~~~d~  166 (309)
                      ..                  .....+++++..++. ..++                                 .|.+||+
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~  270 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP  270 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred             CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence            21                  134677888764444 4443                                 7888887


Q ss_pred             CC-CCcCCceEEEeC-CCCCCCeEEEEccCCCEEEEEeC-----CCcEEEEECCCCeEeEEeeecCC-CCCccceEEECC
Q 021648          167 RK-YEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTM-----EGHIHVLDSFRGTLLSTYNVKPV-SRNSTLEASFSP  238 (309)
Q Consensus       167 ~~-~~~~~~~~~~~~-~~~~~~~~v~~s~dg~~l~~~~~-----dg~v~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~sp  238 (309)
                      .. .+.   ...... .+...+..++| |||+.|+..+.     +..|++||..+++....+..+.. ....+..++|+|
T Consensus       271 ~~~~~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp  346 (741)
T 2ecf_A          271 AEQAQT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD  346 (741)
T ss_dssp             STTCCC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred             CCCCce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence            65 331   111111 23345778999 99999987764     56899999999887665543211 001345789999


Q ss_pred             CCCEEEEEcCCCcEEEEECC-CCceEEEeecCCCCCcEE-EECCCeeEEE-Eccc----eEEEeeecC
Q 021648          239 EGMFVISGSGDGSVYAWSVR-SGKEVASWMSFDTEPPVI-KWTPGSLMFV-TGSS----ELSFWIPDL  299 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~v~~l-~~~p~~~~l~-s~~~----d~~~~~~~~  299 (309)
                      ||+++++++.||.++||.+. +++ ...+..|...+..+ +|+|+++.++ +++.    ..++|..++
T Consensus       347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            99999999999988888775 344 67777777778777 5999997654 4443    367887764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=5.5e-24  Score=185.78  Aligned_cols=268  Identities=12%  Similarity=0.121  Sum_probs=199.4

Q ss_pred             CCcceEEEEeCCCCCEEEEeeC-------CCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648           10 YNGRISSMDFHKSSSYLVTASD-------DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~-------D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ....+..++|+|+++++++++.       +++|.+||..+++.++.+.... .+..++++++++.++++..  .++.|.+
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~--~~~~v~~  115 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-KPFGATINNTTQTLWFGNT--VNSAVTA  115 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-CCCSEEEETTTTEEEEEET--TTTEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-CcceEEECCCCCEEEEEec--CCCEEEE
Confidence            3456789999999998887774       5689999999999888877543 3677899999997776653  3679999


Q ss_pred             EEccCCceEEEeeecccC---------EEEEEecCCCCeEEEec--CCCcEEEeeCCCceeeeeeeecC--ceeEEECCC
Q 021648           83 LSLHDNKYLRYFKGHHDR---------VVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQ  149 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~---------v~~v~~~~~~~~l~s~s--~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~  149 (309)
                      ||.++++.+..+..+...         +.++.|+|++++++.++  .++.|.+||+++++....+....  .....++++
T Consensus       116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d  195 (353)
T 3vgz_A          116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSE  195 (353)
T ss_dssp             EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETT
T ss_pred             EeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCC
Confidence            999999988887765432         78999999999776665  58899999999888776665222  234556666


Q ss_pred             Cc-EEEEEECCEEEEEECCCCCcCCceEEEeC--CCCCCCeEEEEccCCCEEEEEe-CCCcEEEEECCCCeEeEEeeecC
Q 021648          150 GL-VFAVAFGGYIRMFDARKYEKGPFDIFSVG--GDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKP  225 (309)
Q Consensus       150 ~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~  225 (309)
                      +. ++.+..++.|.+||+...+.  .......  ++......++++|+|+.+..+. .++.|.+||..+++.+..+....
T Consensus       196 g~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  273 (353)
T 3vgz_A          196 GKRLYTTNADGELITIDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE  273 (353)
T ss_dssp             TTEEEEECTTSEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred             CCEEEEEcCCCeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence            65 44444578999999875432  1122221  1233466799999999766655 45999999999998887765421


Q ss_pred             CCCCccceEEECCCCCEEEEE-cCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEc
Q 021648          226 VSRNSTLEASFSPEGMFVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG  288 (309)
Q Consensus       226 ~~~~~~~~~~~sp~g~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~  288 (309)
                           ...++|+|+|++++.+ ..++.|.+||+.+++.+..+... ..+..++|+|+++.+..+
T Consensus       274 -----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~  331 (353)
T 3vgz_A          274 -----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVS  331 (353)
T ss_dssp             -----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEE
T ss_pred             -----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEE
Confidence                 2468999999966555 57999999999999888777543 467899999999854443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=9.5e-25  Score=185.11  Aligned_cols=254  Identities=11%  Similarity=0.049  Sum_probs=184.7

Q ss_pred             EEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC-CceEEEeeecc-cCEEEE
Q 021648           27 VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYLRYFKGHH-DRVVSL  104 (309)
Q Consensus        27 ~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~-~~~~~~~~~h~-~~v~~v  104 (309)
                      .+++.|++|++||+.+++... +..|...+..++|+|+++.+++++    ++.|++||+.+ ++......+|. ..+.++
T Consensus        16 ~~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~   90 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS----EGLLYRLSLAGDPSPEKVDTGFATICNNDH   90 (297)
T ss_dssp             --CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE----TTEEEEEESSSCCSCEECCCTTCCCBCSCC
T ss_pred             CCCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc----CCeEEEEeCCCCCCceEeccccccccccce
Confidence            356789999999999887664 445677899999999999988875    67999999999 88777776664 678999


Q ss_pred             EecCCCCeEEEec--CCCcEEEeeC--CCceeeeeeeecCceeEEECCCCcEEE--EEECCEEEEEECCCCCcCCceEEE
Q 021648          105 SLCSSKDCFISGS--LDRTVLLWDQ--RAEKCQGLLRVQGRPAAAYDDQGLVFA--VAFGGYIRMFDARKYEKGPFDIFS  178 (309)
Q Consensus       105 ~~~~~~~~l~s~s--~Dg~v~~Wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~d~~~~~~~~~~~~~  178 (309)
                      .|+|++++|++++  .++..++|.+  .++...............+++++..++  ...++.+++|++..... .  ...
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-~--~~~  167 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-V--ETR  167 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-C--EEE
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC-c--ceE
Confidence            9999999999998  4455666654  444322221122233456777776443  45689999998643221 1  233


Q ss_pred             eCCCCCCCeEEEEccCCCEEEEEe-CCCcEEEEECC-CCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC-------
Q 021648          179 VGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-------  249 (309)
Q Consensus       179 ~~~~~~~~~~v~~s~dg~~l~~~~-~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D-------  249 (309)
                      +..+...+..++++|+|+.++.++ .++.+++|+.. .+.....+.   .+...+..++|+|+|++|++++.+       
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  244 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT---DSAYGDWFPHPSPSGDKVVFVSYDADVFDHP  244 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC---CCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe---cCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence            344455788999999999888766 58999999875 344444332   233456778999999999999876       


Q ss_pred             ----CcEEEEECCCCce--EEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          250 ----GSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       250 ----g~i~vwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                          +.|++||+.+++.  +..+..|...+..++|+|+++.|++++.+
T Consensus       245 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          245 RDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             SSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             ccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence                5699999988765  44455788899999999999988887764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=1.2e-23  Score=209.34  Aligned_cols=278  Identities=13%  Similarity=0.132  Sum_probs=197.1

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCC------CcEEEEEcCCCceeeeeeccccce-------eEEEEecCCCEEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDD------ESIRLYDVTAATCLKTINSKKYGV-------DLVCFTSHPTTVIY   70 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D------~~v~iWd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~~   70 (309)
                      .+.+.+|.+.|.+++|||||++||.++.+      ..|.+||+.+++ .+.+..|...+       ..++|+|+++ +++
T Consensus        45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~  122 (1045)
T 1k32_A           45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGN-LII  122 (1045)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCC-EEE
T ss_pred             EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCE-EEE
Confidence            35678899999999999999999988754      379999998876 56677777667       8899999998 444


Q ss_pred             EcCCC----CCceeEEEEccCCceE-------------------------------------------------EEeeec
Q 021648           71 SSKNG----WDESLRLLSLHDNKYL-------------------------------------------------RYFKGH   97 (309)
Q Consensus        71 ~s~~g----~d~~i~~~d~~~~~~~-------------------------------------------------~~~~~h   97 (309)
                      ++...    ....+.+||+.+++..                                                 ..+.+|
T Consensus       123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~  202 (1045)
T 1k32_A          123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM  202 (1045)
T ss_dssp             EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred             EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence            43221    1245777777655422                                                 223567


Q ss_pred             ccCEEEEEecCCCCeEEEecCCCcEEEeeCCC-ceeeeeee-ecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCce
Q 021648           98 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLLR-VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD  175 (309)
Q Consensus        98 ~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  175 (309)
                      ...+.++.|+++ +.+++++.|+++++|.+.. +.....+. ........+++++..++.+.++.|.+||+..   ..+ 
T Consensus       203 ~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~---~~l-  277 (1045)
T 1k32_A          203 STHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDT---EKI-  277 (1045)
T ss_dssp             SSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTT---CCE-
T ss_pred             CCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCc---eEe-
Confidence            788888999887 6777888899999997543 22222221 1222344667778777777899999999732   111 


Q ss_pred             EEEeCCC-----------CCCCeEEEEc-cCCCEEEEEeCCCcEEEEECCCCeEeE------------------------
Q 021648          176 IFSVGGD-----------ISDANVVKFS-NDGRLMLLTTMEGHIHVLDSFRGTLLS------------------------  219 (309)
Q Consensus       176 ~~~~~~~-----------~~~~~~v~~s-~dg~~l~~~~~dg~v~i~d~~~~~~~~------------------------  219 (309)
                       ..+..+           ...+..++|| |||+.+++++ ++.+.+|+...+....                        
T Consensus       278 -~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s  355 (1045)
T 1k32_A          278 -EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGT  355 (1045)
T ss_dssp             -EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEE
T ss_pred             -eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEEE
Confidence             122221           1247889999 9999888776 6777777765443211                        


Q ss_pred             -------Eeee-------cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEE
Q 021648          220 -------TYNV-------KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF  285 (309)
Q Consensus       220 -------~~~~-------~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l  285 (309)
                             .+..       ...+...+..++|||||++|++++.|+.|++||+.+++.......|...+..++|+||+++|
T Consensus       356 ~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~l  435 (1045)
T 1k32_A          356 REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI  435 (1045)
T ss_dssp             TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred             CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeE
Confidence                   0000       00122456678999999999999999999999999998777777898899999999999988


Q ss_pred             EEccc
Q 021648          286 VTGSS  290 (309)
Q Consensus       286 ~s~~~  290 (309)
                      +.++.
T Consensus       436 a~~~~  440 (1045)
T 1k32_A          436 AYGFP  440 (1045)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            87765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=1.2e-23  Score=182.09  Aligned_cols=263  Identities=10%  Similarity=0.027  Sum_probs=189.7

Q ss_pred             CEEEEeeCCCcEEEEEcCCCceeeeeecccc--ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeee-c---
Q 021648           24 SYLVTASDDESIRLYDVTAATCLKTINSKKY--GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG-H---   97 (309)
Q Consensus        24 ~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~-h---   97 (309)
                      +++++++.|++|++||+.+++.++.+.....  .+..++|+|+++.++++..  .++.|.+||+.+++.+..+.. +   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~   79 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN--KSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET--TTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC--CCCeEEEEECCCCCeEeeEEcCCccc
Confidence            4789999999999999999998888764432  3678999999988766543  367999999999988776653 2   


Q ss_pred             -ccCEEEEEecCCCCeEEEec------------CCCcEEEeeCCCceeeeeeeecC-ceeEEECCCCcEEEEEECCEEEE
Q 021648           98 -HDRVVSLSLCSSKDCFISGS------------LDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVAFGGYIRM  163 (309)
Q Consensus        98 -~~~v~~v~~~~~~~~l~s~s------------~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~  163 (309)
                       ...+..+.|+|+++++++++            .|+.|.+||+.+++....+.... .....+++++..+..+ ++.|.+
T Consensus        80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~  158 (337)
T 1pby_B           80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHV  158 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEE
T ss_pred             ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEE
Confidence             23677899999999888886            57999999998887766554432 2345677777655555 789999


Q ss_pred             EECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC-C-----------------------cEEEEECCCCeEeE
Q 021648          164 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G-----------------------HIHVLDSFRGTLLS  219 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d-g-----------------------~v~i~d~~~~~~~~  219 (309)
                      ||+...+.  ...........   .+.++|||+.++..+.. +                       .|.+||..+++.. 
T Consensus       159 ~d~~~~~~--~~~~~~~~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-  232 (337)
T 1pby_B          159 MDPEAGTL--VEDKPIQSWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-  232 (337)
T ss_dssp             EETTTTEE--EEEECSTTTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-
T ss_pred             EECCCCcE--eeeeeccccCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-
Confidence            99875431  11111111112   23689998866554433 2                       4689999988775 


Q ss_pred             EeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          220 TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       220 ~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      .....+ +...+..++|+|||++++++  ++.|++||+.+++.+..+.. ...+.+++|+|+++.+++++.+..+.++++
T Consensus       233 ~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          233 MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence            333222 23455679999999999998  79999999999888777654 346889999999987777776644444444

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=5.8e-23  Score=178.27  Aligned_cols=270  Identities=9%  Similarity=0.076  Sum_probs=177.1

Q ss_pred             CEEEEeeCCCcEEEEEcC-CCc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc--CCc--eEEEeee
Q 021648           24 SYLVTASDDESIRLYDVT-AAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH--DNK--YLRYFKG   96 (309)
Q Consensus        24 ~~l~t~s~D~~v~iWd~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~--~~~--~~~~~~~   96 (309)
                      .++++++.|++|++||++ +++  .+..+ .+...+..++|+|+++.+++++..  ++.+++|++.  +++  .+..+..
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~   82 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRP--EFRVLAYRIAPDDGALTFAAESAL   82 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecC--CCeEEEEEecCCCCceeecccccc
Confidence            345566889999999995 342  23333 344567889999999988877642  4899999997  554  3344444


Q ss_pred             cccCEEEEEecCCCCeEEEec-CCCcEEEeeCC---CceeeeeeeecC-ceeEEECCCCcEEE-EE-ECCEEEEEECCC-
Q 021648           97 HHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQR---AEKCQGLLRVQG-RPAAAYDDQGLVFA-VA-FGGYIRMFDARK-  168 (309)
Q Consensus        97 h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~i~~~d~~~-  168 (309)
                      +. .+..++|+|++++|+.++ .++.|.+||+.   ..+....+.... .....+++++..+. +. .++.|++||+.. 
T Consensus        83 ~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  161 (343)
T 1ri6_A           83 PG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  161 (343)
T ss_dssp             SS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence            43 788999999999776655 58899999984   333333332222 23456777775444 44 579999999875 


Q ss_pred             CCcCCce--EEEeCCCCCCCeEEEEccCCCEEEEE-eCCCcEEEEECCC--CeE--eEEeeecCCC---CCccceEEECC
Q 021648          169 YEKGPFD--IFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFR--GTL--LSTYNVKPVS---RNSTLEASFSP  238 (309)
Q Consensus       169 ~~~~~~~--~~~~~~~~~~~~~v~~s~dg~~l~~~-~~dg~v~i~d~~~--~~~--~~~~~~~~~~---~~~~~~~~~sp  238 (309)
                      .+.....  .... .....+..++|+|+|+++++. ..++.|++||+..  ++.  .......+..   ...+..++|+|
T Consensus       162 ~~~~~~~~~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~  240 (343)
T 1ri6_A          162 GHLVAQDPAEVTT-VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP  240 (343)
T ss_dssp             SCEEEEEEEEEEC-STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred             Cceeeeccccccc-CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence            2211110  1111 122356789999999976554 5789999999843  433  2222211111   12345689999


Q ss_pred             CCCEEE-EEcCCCcEEEEECC--C--CceEEEeecCCCCCcEEEECCCeeEEEEcc-c--eEEEeeecC
Q 021648          239 EGMFVI-SGSGDGSVYAWSVR--S--GKEVASWMSFDTEPPVIKWTPGSLMFVTGS-S--ELSFWIPDL  299 (309)
Q Consensus       239 ~g~~l~-s~s~Dg~i~vwd~~--~--~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~-~--d~~~~~~~~  299 (309)
                      +|++|+ +...|+.|++||+.  +  .+.+..+..+.. +..++|+|+++.|+.++ .  .+.+|..++
T Consensus       241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            999887 55689999999998  2  334455555544 88999999998766655 3  377886653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=6e-23  Score=178.17  Aligned_cols=265  Identities=10%  Similarity=0.132  Sum_probs=180.7

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCC-CcEEEEEcC--CCc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDD-ESIRLYDVT--AAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D-~~v~iWd~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      .|...+.+++|+|+|++|++++.+ +.|++|+++  +++  .+..+..+. .+..++|+|+++.++++..  .++.|++|
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~--~~~~i~~~  111 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSY--NAGNVSVT  111 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEET--TTTEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEec--CCCeEEEE
Confidence            467789999999999998888886 999999997  554  334444433 6788999999998877653  26789999


Q ss_pred             Ecc---CCceEEEeeecccCEEEEEecCCCCeEEEec-CCCcEEEeeCCC-ceeeee----eeec---CceeEEECCCCc
Q 021648           84 SLH---DNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRA-EKCQGL----LRVQ---GRPAAAYDDQGL  151 (309)
Q Consensus        84 d~~---~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~~-~~~~~~----~~~~---~~~~~~~~~~~~  151 (309)
                      |+.   ..+.+..+..+ ..+.+++|+|+++++++++ .|+.|++||+.+ ++....    +...   ......+++++.
T Consensus       112 d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~  190 (343)
T 1ri6_A          112 RLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  190 (343)
T ss_dssp             EEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             ECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCC
Confidence            994   33444444443 4588999999999777776 899999999987 543321    1111   122356778776


Q ss_pred             EEE-EE-ECCEEEEEECCCCCcCCce-EEEeC---CC---CCCCeEEEEccCCCEEEE-EeCCCcEEEEECC--CC--eE
Q 021648          152 VFA-VA-FGGYIRMFDARKYEKGPFD-IFSVG---GD---ISDANVVKFSNDGRLMLL-TTMEGHIHVLDSF--RG--TL  217 (309)
Q Consensus       152 ~~~-~~-~~~~i~~~d~~~~~~~~~~-~~~~~---~~---~~~~~~v~~s~dg~~l~~-~~~dg~v~i~d~~--~~--~~  217 (309)
                      .+. +. .++.|.+||+.... +.+. .....   ..   ...+..++|+|+|+++++ ...++.|++||+.  ++  +.
T Consensus       191 ~l~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~  269 (343)
T 1ri6_A          191 YAYCVNELNSSVDVWELKDPH-GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK  269 (343)
T ss_dssp             EEEEEETTTTEEEEEESSCTT-SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred             EEEEEeCCCCEEEEEEecCCC-CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence            444 44 47899999985421 1111 11111   11   124457999999987764 5579999999987  33  33


Q ss_pred             eEEeeecCCCCCccceEEECCCCCEEEEEc-CCCcEEEEEC--CCCc--eEEEeecCCCCCcEEEECCCee
Q 021648          218 LSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVYAWSV--RSGK--EVASWMSFDTEPPVIKWTPGSL  283 (309)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s-~Dg~i~vwd~--~~~~--~~~~~~~~~~~v~~l~~~p~~~  283 (309)
                      +..+..   . ..+..++|+|+|++|++++ .|+.|.+|++  .+++  .+..+.. ...+.+++|.|+.+
T Consensus       270 ~~~~~~---~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          270 EGFQPT---E-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG  335 (343)
T ss_dssp             EEEEEC---S-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred             eeeecC---C-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence            333321   2 2367899999999988887 6899999954  4553  3444433 35678889888654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=1.2e-24  Score=208.17  Aligned_cols=280  Identities=10%  Similarity=0.056  Sum_probs=195.0

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecccc---ceeEEEEecCCCEEEEEcCCC------CCceeEE
Q 021648           12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY---GVDLVCFTSHPTTVIYSSKNG------WDESLRL   82 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~s~~g------~d~~i~~   82 (309)
                      ..+.+++|+|||+++++ +.|++|++||+.++++...+..+..   .+..++|+|+++++++++...      .++.+.+
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            34778999999998876 7899999999999998888877654   488999999999998886421      2478999


Q ss_pred             EEccCCceEEEe---eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--c----------------
Q 021648           83 LSLHDNKYLRYF---KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--R----------------  141 (309)
Q Consensus        83 ~d~~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~----------------  141 (309)
                      ||+.+++. ..+   .+|...+..++|+|||+.|+.++. +.|++||..+++.........  .                
T Consensus        96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence            99998875 333   345556889999999999999885 899999998876544332211  1                


Q ss_pred             --eeEEECCCCcEEEEEE-CC----------------------------------EEEEEECCCCCcCCceEEEeCCC--
Q 021648          142 --PAAAYDDQGLVFAVAF-GG----------------------------------YIRMFDARKYEKGPFDIFSVGGD--  182 (309)
Q Consensus       142 --~~~~~~~~~~~~~~~~-~~----------------------------------~i~~~d~~~~~~~~~~~~~~~~~--  182 (309)
                        ....+++++..++.+. ++                                  .|++||+...+.    ...+..+  
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~----~~~l~~~~~  249 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH----DLEMMPPDD  249 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC----CEECCCCCC
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce----eEEeeCCcc
Confidence              3467888887655443 32                                  788898865431    1112211  


Q ss_pred             ----CCCCeEEEEccCCCEEEEEeC----CCcEEEEECCCCeEeEEeeecCCCCCcc----ceEEECCCCCEEEE--EcC
Q 021648          183 ----ISDANVVKFSNDGRLMLLTTM----EGHIHVLDSFRGTLLSTYNVKPVSRNST----LEASFSPEGMFVIS--GSG  248 (309)
Q Consensus       183 ----~~~~~~v~~s~dg~~l~~~~~----dg~v~i~d~~~~~~~~~~~~~~~~~~~~----~~~~~sp~g~~l~s--~s~  248 (309)
                          ...+..++|||||+++++...    +..|++||+.+++....+...  +...+    ..++|||||++|+.  ...
T Consensus       250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~  327 (723)
T 1xfd_A          250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE--SEAWLHRQNEEPVFSKDGRKFFFIRAIP  327 (723)
T ss_dssp             GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE--CSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred             CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec--cCCEEeccCCCceEcCCCCeEEEEEecc
Confidence                235678999999998877653    357999999988866544321  11221    26799999997775  456


Q ss_pred             CC------cEEEEE-CCCCce--EEEeecCCCCCcE-EEECCCeeEEEEccc-----eEEEeeecCC
Q 021648          249 DG------SVYAWS-VRSGKE--VASWMSFDTEPPV-IKWTPGSLMFVTGSS-----ELSFWIPDLS  300 (309)
Q Consensus       249 Dg------~i~vwd-~~~~~~--~~~~~~~~~~v~~-l~~~p~~~~l~s~~~-----d~~~~~~~~~  300 (309)
                      |+      .|++|| ..+++.  ...+..+...+.. ++|+||++.|+..+.     ..++|..++.
T Consensus       328 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          328 QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             cCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence            66      577777 344431  4444433334444 699999987765432     3788987654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=7.7e-24  Score=203.13  Aligned_cols=265  Identities=9%  Similarity=0.068  Sum_probs=188.0

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   90 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~   90 (309)
                      .|.+++|||||++|++++. ++|.+||+.++.  ....+..+...+..++|+|+++.+++++    +++|++||+.+++.
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~----~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR----GRNLWVIDLASGRQ  184 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE----TTEEEEEETTTTEE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe----CCcEEEEecCCCCE
Confidence            4889999999999999986 999999999873  4555666667789999999999999886    45899999999877


Q ss_pred             EEEeeecccC----------------EEEEEecCCCCeEEEecCCC---------------------------------c
Q 021648           91 LRYFKGHHDR----------------VVSLSLCSSKDCFISGSLDR---------------------------------T  121 (309)
Q Consensus        91 ~~~~~~h~~~----------------v~~v~~~~~~~~l~s~s~Dg---------------------------------~  121 (309)
                      ......+...                +.++.|+|||++|++++.|+                                 .
T Consensus       185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            6655555443                47799999999999998776                                 8


Q ss_pred             EEEeeCCC-ceeeeeeee--c--CceeEEECCCCcEEEEE-E-----CCEEEEEECCCCCcCCceEEEeCC--CCCCCeE
Q 021648          122 VLLWDQRA-EKCQGLLRV--Q--GRPAAAYDDQGLVFAVA-F-----GGYIRMFDARKYEKGPFDIFSVGG--DISDANV  188 (309)
Q Consensus       122 v~~Wd~~~-~~~~~~~~~--~--~~~~~~~~~~~~~~~~~-~-----~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~  188 (309)
                      |.+||+.+ ++.......  .  ......+ +++..++.. .     +..|++||+...+..  .+.....  ....+..
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~~~  341 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR--VLAHETSPTWVPLHNS  341 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE--EEEEEECSSCCCCCSC
T ss_pred             EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE--EEEEcCCCCcCCcCCc
Confidence            88999887 665433211  1  1224566 777655543 2     357999998764321  1222111  1113457


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECC-CCeEeEEeeecCCCCCccceE-EECCCCCEEEE-EcCCC--cEEEEECCC-Cce
Q 021648          189 VKFSNDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEA-SFSPEGMFVIS-GSGDG--SVYAWSVRS-GKE  262 (309)
Q Consensus       189 v~~s~dg~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~-~~sp~g~~l~s-~s~Dg--~i~vwd~~~-~~~  262 (309)
                      ++|+|||++++++..+|.++||... .+. ...+.   .+...+..+ .|+|||++|+. ++.|+  .++||++.. +..
T Consensus       342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~---~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~  417 (741)
T 2ecf_A          342 LRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT---HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ  417 (741)
T ss_dssp             CEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC---CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC
T ss_pred             eEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee---ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC
Confidence            8999999988889999988887654 344 44332   233445565 59999998754 55555  899999864 554


Q ss_pred             EEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648          263 VASWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       263 ~~~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      ...+.. ...+..++|+||++.++...+
T Consensus       418 ~~~l~~-~~~~~~~~~spdg~~l~~~~~  444 (741)
T 2ecf_A          418 PQRLSK-APGMHSASFARNASVYVDSWS  444 (741)
T ss_dssp             CEECCC-SCSEEEEEECTTSSEEEEEEE
T ss_pred             eeeccc-CCCceEEEECCCCCEEEEEec
Confidence            555554 556789999999988776544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.93  E-value=4.6e-24  Score=199.48  Aligned_cols=270  Identities=11%  Similarity=0.048  Sum_probs=190.6

Q ss_pred             CcceEEEEeCCCCCEEEEeeC-CCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC--
Q 021648           11 NGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--   87 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~-D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~--   87 (309)
                      ..+|.+++|+|||++||+++. |++++||++++++..+....+...+..++|+|+ +.++++...+.+...++|.+..  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            457999999999999999987 999999999777665554444457888899988 4444443222355667765533  


Q ss_pred             -CceEEEeeecccCEEEEEecCCCC--eEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEE-EEC----C
Q 021648           88 -NKYLRYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV-AFG----G  159 (309)
Q Consensus        88 -~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~  159 (309)
                       ++.. .+..+. .+...+|+||++  .+++++.|+. .+||++++++........ ....+++++..++. +.+    .
T Consensus       100 ~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A          100 PGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             TTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEE
T ss_pred             CCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCe
Confidence             2222 332222 234567888875  4555555554 599998887655544333 55667788876664 444    6


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC--cEEEEECCCCeEeEEeeecCCCCCccceEE--
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEAS--  235 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~--  235 (309)
                      .|++||+...+.     ..+..+...+..++|||||+.|+++..++  +|++||+.+++.. ...   .+...+..++  
T Consensus       176 ~i~~~d~~~g~~-----~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~---~~~~~~~~~~~~  246 (582)
T 3o4h_A          176 SLFTSNLSSGGL-----RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE---LPSKDFSSYRPT  246 (582)
T ss_dssp             EEEEEETTTCCC-----EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC---CSCSHHHHHCCS
T ss_pred             EEEEEcCCCCCc-----eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc---CCCcChhhhhhc
Confidence            799999865432     23444555678899999999999888888  8999999888776 332   2334455566  


Q ss_pred             ------ECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce---EEEeeecCC
Q 021648          236 ------FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFWIPDLS  300 (309)
Q Consensus       236 ------~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d---~~~~~~~~~  300 (309)
                            |+|||+.+++++.|+++++|++  ++...   .+.+.+.+++|+ +++++++++++   ..+|.+++.
T Consensus       247 ~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          247 AITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             cccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence                  9999999999999999999999  65544   334567889999 99988887765   667777664

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=3.3e-23  Score=197.73  Aligned_cols=266  Identities=11%  Similarity=0.084  Sum_probs=186.5

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC----
Q 021648           12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----   87 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~----   87 (309)
                      ..|.+++|+|| ++++.+ .|+++++||+.+++..... .+...+..++|+|+++.++++.    |+.|++||+.+    
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~~----~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYVR----NHNLYIARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEEE----TTEEEEEECBCTTSC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEEE----CCeEEEEecCccccc
Confidence            56999999999 665555 4699999999988765543 3445678899999999998864    68999999998    


Q ss_pred             -CceEEEeeecccC--------------EEEEEecCCCCeEEEec---------------------------------CC
Q 021648           88 -NKYLRYFKGHHDR--------------VVSLSLCSSKDCFISGS---------------------------------LD  119 (309)
Q Consensus        88 -~~~~~~~~~h~~~--------------v~~v~~~~~~~~l~s~s---------------------------------~D  119 (309)
                       ++.......+...              +.++.|+|||++|++++                                 .+
T Consensus       155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence             8766655544443              47899999999999987                                 45


Q ss_pred             CcEEEeeCCCceeeeeeeec--C--ceeEEECCCCcEEEE-EECC-----EEEEEECCCCCcCCceEEEeCC--CCCCCe
Q 021648          120 RTVLLWDQRAEKCQGLLRVQ--G--RPAAAYDDQGLVFAV-AFGG-----YIRMFDARKYEKGPFDIFSVGG--DISDAN  187 (309)
Q Consensus       120 g~v~~Wd~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~-~~~~-----~i~~~d~~~~~~~~~~~~~~~~--~~~~~~  187 (309)
                      ..|.+||+++++........  .  .....+++++..++. ..++     .|++||+...+.. ..+.....  ....+.
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~-~~~~~~~~~~~~~~~~  313 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV-RTLFVETDKHYVEPLH  313 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE-EEEEEEECSSCCCCCS
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee-eEEEEccCCCeECccC
Confidence            78999999887754433211  1  234677888875554 4454     8999998764211 11111111  111235


Q ss_pred             EEEEcc--CCCEEEEEeCCCcEEEEECC-CCeEeEEeeecCCCCCccce-EEECCCCCEEEEEcC-CC----cEEEEECC
Q 021648          188 VVKFSN--DGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLE-ASFSPEGMFVISGSG-DG----SVYAWSVR  258 (309)
Q Consensus       188 ~v~~s~--dg~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~-~~~sp~g~~l~s~s~-Dg----~i~vwd~~  258 (309)
                      .++|+|  ||++++++..++.+++|+.. ++..+..+..   +...+.. ++|+|||++|+.++. ++    .|+.||+.
T Consensus       314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~---~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  390 (706)
T 2z3z_A          314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK---GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK  390 (706)
T ss_dssp             CCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC---SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred             CceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC---CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence            679999  99999999999999999875 5555554432   2334544 799999998866544 44    67777877


Q ss_pred             CCceEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648          259 SGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       259 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      +++ ...+ .|...+..++|+||++.++..++
T Consensus       391 ~~~-~~~l-~~~~~~~~~~~spdg~~l~~~~~  420 (706)
T 2z3z_A          391 GGK-TKDL-TPESGMHRTQLSPDGSAIIDIFQ  420 (706)
T ss_dssp             CCC-CEES-CCSSSEEEEEECTTSSEEEEEEE
T ss_pred             CCC-ceec-cCCCceEEEEECCCCCEEEEEec
Confidence            765 3333 36667889999999988776543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=1e-21  Score=170.13  Aligned_cols=275  Identities=10%  Similarity=0.098  Sum_probs=181.6

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeC-CCcEEEEEcCCCce-eeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~-D~~v~iWd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      +...+..+...+ .++|+|+|++++.++. |+.|.+||..+++. ...+..+..+...++|+|+++.++++...+.++.|
T Consensus        32 ~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i  110 (331)
T 3u4y_A           32 ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNM  110 (331)
T ss_dssp             EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEE
T ss_pred             eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccE
Confidence            445555566667 9999999997666555 89999999999887 67777666555558999999988843321112299


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCCeEE-EecCCCc-EEEeeCCCceeee-----eeeec-CceeEEECCCCcE
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRT-VLLWDQRAEKCQG-----LLRVQ-GRPAAAYDDQGLV  152 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~Dg~-v~~Wd~~~~~~~~-----~~~~~-~~~~~~~~~~~~~  152 (309)
                      ++||+.+++.+..+..+ ....+++|+|++++++ +...++. +.+|++.......     .+... ......+++++..
T Consensus       111 ~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~  189 (331)
T 3u4y_A          111 QSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNF  189 (331)
T ss_dssp             EEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSE
T ss_pred             EEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCE
Confidence            99999999888777644 4568999999998555 4455688 9999986533221     11111 1234677888864


Q ss_pred             E-EEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEE-eCCCcEEEEECCCCeE--eEEeeecC-C
Q 021648          153 F-AVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTL--LSTYNVKP-V  226 (309)
Q Consensus       153 ~-~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~-~~dg~v~i~d~~~~~~--~~~~~~~~-~  226 (309)
                      + .+. .++.|++||+...+.. ..+..+.. ...+..++|+|||++++.+ ..++.|.+||..+++.  +..+.... .
T Consensus       190 l~v~~~~~~~v~v~d~~~~~~~-~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  267 (331)
T 3u4y_A          190 AFVANLIGNSIGILETQNPENI-TLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI  267 (331)
T ss_dssp             EEEEETTTTEEEEEECSSTTSC-EEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC
T ss_pred             EEEEeCCCCeEEEEECCCCccc-ceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc
Confidence            4 343 3689999998754320 01222222 2456778999999976555 4578899999998887  33332110 0


Q ss_pred             CCCc---cceEEECCCCCEEEEE-cCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCe
Q 021648          227 SRNS---TLEASFSPEGMFVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS  282 (309)
Q Consensus       227 ~~~~---~~~~~~sp~g~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~  282 (309)
                      ....   ...++|+|||++|+.+ ..++.|++||+.+. .+.....+...-....++|+.
T Consensus       268 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~~g~~~~~~~~~  326 (331)
T 3u4y_A          268 DPRPLFGANQMALNKTETKLFISANISRELKVFTISGK-VVGYVAGIEANGGIAICHPDK  326 (331)
T ss_dssp             CCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC-EEEECTTCCCBSCEEECCCC-
T ss_pred             CCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC-cccceecccccCCeEEECCcc
Confidence            1111   2347999999988665 45669999999764 344444444444445556654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=1.4e-23  Score=200.25  Aligned_cols=274  Identities=10%  Similarity=0.105  Sum_probs=191.0

Q ss_pred             eEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee-eeeeccc-----------------cceeEEEEecCCCEEEEEcCCC
Q 021648           14 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-KTINSKK-----------------YGVDLVCFTSHPTTVIYSSKNG   75 (309)
Q Consensus        14 V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~~~~~s~~g   75 (309)
                      +..+.|+  |+.+++++.|+ | +||+.+++.+ +.+..+.                 ..+..++|+|+ ..++++.   
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~---   99 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT---   99 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE---
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE---
Confidence            5567788  66777888888 8 9999999884 4444332                 45889999999 7777664   


Q ss_pred             CCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCC-----ceeeeeeeecCc---------
Q 021648           76 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-----EKCQGLLRVQGR---------  141 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~-----~~~~~~~~~~~~---------  141 (309)
                       ++++++||+.+++.. .+..+...+.+++|+|||+.|+.+ .|+.|++||+.+     ++..........         
T Consensus       100 -~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  176 (706)
T 2z3z_A          100 -QGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH  176 (706)
T ss_dssp             -TTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred             -CCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence             579999999888654 445577788999999999999885 689999999987     655433322211         


Q ss_pred             -------eeEEECCCCcEEEEEE----------------------------------CCEEEEEECCCCCcCCceEEEeC
Q 021648          142 -------PAAAYDDQGLVFAVAF----------------------------------GGYIRMFDARKYEKGPFDIFSVG  180 (309)
Q Consensus       142 -------~~~~~~~~~~~~~~~~----------------------------------~~~i~~~d~~~~~~~~~~~~~~~  180 (309)
                             ....+++++..++.+.                                  +..|++||+...+..  .+....
T Consensus       177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~--~~~~~~  254 (706)
T 2z3z_A          177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV--YLQTGE  254 (706)
T ss_dssp             GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE--ECCCCS
T ss_pred             hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE--eeccCC
Confidence                   3567888887666553                                  257999998653311  111111


Q ss_pred             CCCCCCeEEEEccCCCEEEEEeCCC-----cEEEEECCCC-eEeEEeeec-CCCCCccceEEECC--CCCEEEEEcCCCc
Q 021648          181 GDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRG-TLLSTYNVK-PVSRNSTLEASFSP--EGMFVISGSGDGS  251 (309)
Q Consensus       181 ~~~~~~~~v~~s~dg~~l~~~~~dg-----~v~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~sp--~g~~l~s~s~Dg~  251 (309)
                      .+...+..++|||||+.+++++.++     .|++||..++ ......... ......+..++|+|  ||+++++++.|+.
T Consensus       255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~  334 (706)
T 2z3z_A          255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW  334 (706)
T ss_dssp             CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred             CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence            2334577899999999999988776     8999999988 433222111 11111235679999  9999999999999


Q ss_pred             EEEEECC-CCceEEEeecCCCCCcE-EEECCCeeEEEEcc-ce----EEEeeecCC
Q 021648          252 VYAWSVR-SGKEVASWMSFDTEPPV-IKWTPGSLMFVTGS-SE----LSFWIPDLS  300 (309)
Q Consensus       252 i~vwd~~-~~~~~~~~~~~~~~v~~-l~~~p~~~~l~s~~-~d----~~~~~~~~~  300 (309)
                      ++||++. +++.+..+..+...+.. ++|+|+++.|+.++ .+    .++|.+++.
T Consensus       335 ~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  390 (706)
T 2z3z_A          335 NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK  390 (706)
T ss_dssp             CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred             cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence            9999886 66677777777777776 89999997665444 33    488888653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=4.9e-23  Score=178.27  Aligned_cols=245  Identities=11%  Similarity=-0.007  Sum_probs=179.4

Q ss_pred             ceEEEEeCCCCCEE-EEeeCCCcEEEEEcCCCceeeeeeccc-----cceeEEEEecCCCEEEEEcCC------C---CC
Q 021648           13 RISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKK-----YGVDLVCFTSHPTTVIYSSKN------G---WD   77 (309)
Q Consensus        13 ~V~~i~~s~~~~~l-~t~s~D~~v~iWd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~s~~------g---~d   77 (309)
                      .+..++|+|+|+++ ++++.++.|.+||+.+++.+..+....     ..+..++++|+++.++++...      .   .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            47899999999765 666678999999999998887765422     246778999999988877411      0   26


Q ss_pred             ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC-ceeEEECCCCcEEEEE
Q 021648           78 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVA  156 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  156 (309)
                      +.|.+||+.+++.+..+.. ...+.++.|+|++++|+++  ++.|.+||+++++....+.... .....+.+++..+...
T Consensus       115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  191 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeee
Confidence            8999999999887777664 4567889999999988887  6899999999887765544322 0111223333211111


Q ss_pred             E---------------CC----------EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEE
Q 021648          157 F---------------GG----------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  211 (309)
Q Consensus       157 ~---------------~~----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d  211 (309)
                      .               ++          .|.+||+...+..   ..........+..++++|||++++++  ++.|++||
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d  266 (337)
T 1pby_B          192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA---MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFD  266 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEE
T ss_pred             ccCCCceeeeeeccccccccccccccccceEEEeCCCCCce---EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEE
Confidence            1               11          5789998764321   22233333456789999999998888  79999999


Q ss_pred             CCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC
Q 021648          212 SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF  269 (309)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~  269 (309)
                      +.+++.+..+...    ..+..++|+|||++|++++.|+.|++||+.+++.+..+..+
T Consensus       267 ~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          267 LEKNASIKRVPLP----HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TTTTEEEEEEECS----SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCCCcCcceecCC----CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            9998887766532    34568999999999999999999999999999988887654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=5.9e-22  Score=173.09  Aligned_cols=266  Identities=12%  Similarity=0.138  Sum_probs=175.7

Q ss_pred             CCCcEEEEEcC--CCceee-eeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc--eEEEeeecccCEEEEE
Q 021648           31 DDESIRLYDVT--AATCLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--YLRYFKGHHDRVVSLS  105 (309)
Q Consensus        31 ~D~~v~iWd~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~--~~~~~~~h~~~v~~v~  105 (309)
                      .++.+.+|+++  +++... ....+...+..++|+|+++ +++++..+.++.|.+||+.+++  .+..+..+...+..++
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence            46678888664  455433 2233344567799999998 6665532346899999998776  3445566788899999


Q ss_pred             ecCCCCeEEEec-CCCcEEEeeCCC-cee--eeeeeecC-----------ceeEEECCCCcEEEEEE-CCEEEEEECCCC
Q 021648          106 LCSSKDCFISGS-LDRTVLLWDQRA-EKC--QGLLRVQG-----------RPAAAYDDQGLVFAVAF-GGYIRMFDARKY  169 (309)
Q Consensus       106 ~~~~~~~l~s~s-~Dg~v~~Wd~~~-~~~--~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~  169 (309)
                      |+||+++|++++ .++++++||+.. +..  ...+....           .....+++++.++++.. ++.|++|++...
T Consensus        93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A           93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence            999999888877 789999999853 222  22221111           12367778777555554 678999998721


Q ss_pred             CcCCceE-EEeCC-CCCCCeEEEEccCCCEEEE-EeCCCcEEEEECCC--CeEeE--EeeecCCC---CCccceEEECCC
Q 021648          170 EKGPFDI-FSVGG-DISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFR--GTLLS--TYNVKPVS---RNSTLEASFSPE  239 (309)
Q Consensus       170 ~~~~~~~-~~~~~-~~~~~~~v~~s~dg~~l~~-~~~dg~v~i~d~~~--~~~~~--~~~~~~~~---~~~~~~~~~sp~  239 (309)
                        +.+.. ..... .......++|+|||+++++ ...++.|++|+...  ++...  .....+..   ...+..++|+||
T Consensus       173 --g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd  250 (347)
T 3hfq_A          173 --GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD  250 (347)
T ss_dssp             --SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT
T ss_pred             --CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC
Confidence              22221 11111 1235677999999995555 56789999999764  55432  22211110   133567999999


Q ss_pred             CCEE-EEEcCCCcEEEEECCC---CceEEEeecCCCCCcEEEECCCeeEEEEccce---EEEeeecC
Q 021648          240 GMFV-ISGSGDGSVYAWSVRS---GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFWIPDL  299 (309)
Q Consensus       240 g~~l-~s~s~Dg~i~vwd~~~---~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d---~~~~~~~~  299 (309)
                      |++| ++...++.|.+|++..   .+.+..+..+...+..++|+||+++|+.++.+   +.+|..+.
T Consensus       251 G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          251 GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            9988 5556789999999973   24556666667778999999999877666543   77775554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=3.1e-23  Score=198.34  Aligned_cols=275  Identities=8%  Similarity=0.033  Sum_probs=186.4

Q ss_pred             ceEecCCCc---ceEEEEeCCCCCEEEEeeCC---------CcEEEEEcCCCcee--eeeeccccceeEEEEecCCCEEE
Q 021648            4 GMSFRDYNG---RISSMDFHKSSSYLVTASDD---------ESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTTVI   69 (309)
Q Consensus         4 ~~~~~~h~~---~V~~i~~s~~~~~l~t~s~D---------~~v~iWd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~   69 (309)
                      ...+.+|..   .|.+++|||||++||+++.|         +.+.+||+.++++.  .....+...+..++|+|+++.++
T Consensus        50 ~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la  129 (723)
T 1xfd_A           50 TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLI  129 (723)
T ss_dssp             EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred             EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEE
Confidence            345566665   49999999999999999875         77889999988762  22223344478899999999999


Q ss_pred             EEcCCCCCceeEEEEccCCceEEEeeecccCE------------------EEEEecCCCCeEEEecCCC-----------
Q 021648           70 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV------------------VSLSLCSSKDCFISGSLDR-----------  120 (309)
Q Consensus        70 ~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v------------------~~v~~~~~~~~l~s~s~Dg-----------  120 (309)
                      +++    +++|++||+.+++.+.....+...+                  .++.|+|||+.|++++.|+           
T Consensus       130 ~~~----~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~  205 (723)
T 1xfd_A          130 FIF----ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY  205 (723)
T ss_dssp             EEE----TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC
T ss_pred             EEE----CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeecc
Confidence            887    4689999999988777666554433                  7899999999999987653           


Q ss_pred             -----------------------cEEEeeCCCceeeeeeeec------C--ceeEEECCCCcEEEEEE-----CCEEEEE
Q 021648          121 -----------------------TVLLWDQRAEKCQGLLRVQ------G--RPAAAYDDQGLVFAVAF-----GGYIRMF  164 (309)
Q Consensus       121 -----------------------~v~~Wd~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~-----~~~i~~~  164 (309)
                                             +|++||+.+++....+...      .  .....+++++.+++...     +..|++|
T Consensus       206 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~  285 (723)
T 1xfd_A          206 TGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC  285 (723)
T ss_dssp             SSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEE
T ss_pred             CCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEE
Confidence                                   7999999887643333321      1  22467788887775442     2479999


Q ss_pred             ECCCCCcCCceEEEeCCCCCCC----eEEEEccCCCEEEE--EeCCC------cEEEEE-CCCCeE--eEEeeecCCCCC
Q 021648          165 DARKYEKGPFDIFSVGGDISDA----NVVKFSNDGRLMLL--TTMEG------HIHVLD-SFRGTL--LSTYNVKPVSRN  229 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~----~~v~~s~dg~~l~~--~~~dg------~v~i~d-~~~~~~--~~~~~~~~~~~~  229 (309)
                      |+...+.  ..+.... +...+    ..++|||||+.|+.  ...++      +|.+|| ...+..  ...+.  . ...
T Consensus       286 d~~~g~~--~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~-~~~  359 (723)
T 1xfd_A          286 DATTGVC--TKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--S-GDW  359 (723)
T ss_dssp             ETTTCCE--EEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--C-SSS
T ss_pred             eCCCCcc--eEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--c-CCe
Confidence            9865432  1111111 11111    36799999997765  44566      577777 333330  22221  1 112


Q ss_pred             ccce-EEECCCCCEEEEEcCC---CcEEEEECCCCc--eEEEeec---CCCCCcEEEECCCeeEEEEc
Q 021648          230 STLE-ASFSPEGMFVISGSGD---GSVYAWSVRSGK--EVASWMS---FDTEPPVIKWTPGSLMFVTG  288 (309)
Q Consensus       230 ~~~~-~~~sp~g~~l~s~s~D---g~i~vwd~~~~~--~~~~~~~---~~~~v~~l~~~p~~~~l~s~  288 (309)
                      .+.. ++|+|||++|+..+.+   +.+++|++....  ....+..   |...+..++|+||++.++..
T Consensus       360 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          360 DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence            2333 6899999999766555   789999986432  2333433   56778999999999877654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=2.7e-23  Score=206.69  Aligned_cols=269  Identities=10%  Similarity=0.054  Sum_probs=201.9

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC-CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      ..+.+|.+.+.++.|+++ .++++++.|++++||.++. +...+.+..+. .+...+|+|+++.++++.    ++.+.+|
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~----~~~i~~~  270 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK----GGSIYIF  270 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE----TTEEEEE
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe----CCEEEEe
Confidence            345789999999999998 6778888999999998753 44555555554 355679999999888874    6799999


Q ss_pred             EccCCceEEEeee-----------cccCEEEEEec-CCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCC
Q 021648           84 SLHDNKYLRYFKG-----------HHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQ  149 (309)
Q Consensus        84 d~~~~~~~~~~~~-----------h~~~v~~v~~~-~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~  149 (309)
                      |++..+ +..+.+           |...+.+++|+ |||+.|++++ ++.+.+|+...+..........  .....++ +
T Consensus       271 d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-d  347 (1045)
T 1k32_A          271 NPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-T  347 (1045)
T ss_dssp             CTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-S
T ss_pred             cCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-C
Confidence            995443 335544           44578999999 9999999888 8899999988765443222111  1223455 5


Q ss_pred             CcEEEEE-ECCEEE-EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCC
Q 021648          150 GLVFAVA-FGGYIR-MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  227 (309)
Q Consensus       150 ~~~~~~~-~~~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  227 (309)
                      +..++.. .+..+. +||+....     ...+.++...+..++|||||+.|++++.++.|++||+.+++......   .+
T Consensus       348 g~~l~~~s~~~~l~~~~d~~~~~-----~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~---~~  419 (1045)
T 1k32_A          348 KVAFIHGTREGDFLGIYDYRTGK-----AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER---SR  419 (1045)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCC-----EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CS
T ss_pred             CCeEEEEECCCceEEEEECCCCC-----ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc---CC
Confidence            5544444 345677 77875432     12233455678899999999999999999999999999988766543   24


Q ss_pred             CCccceEEECCCCCEEEEEcCCC----------cEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          228 RNSTLEASFSPEGMFVISGSGDG----------SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       228 ~~~~~~~~~sp~g~~l~s~s~Dg----------~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      ...+..++|||||++|++++.++          .|++||+.+++ +..+..|...+..++|+|||+.|+.++.+
T Consensus       420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~  492 (1045)
T 1k32_A          420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYR  492 (1045)
T ss_dssp             SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred             CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence            45677899999999999987754          99999999876 66777788788899999999988877753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=1.3e-21  Score=170.80  Aligned_cols=248  Identities=13%  Similarity=0.164  Sum_probs=165.6

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeC---CCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            9 DYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~---D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      .+...+..++|+|||+ |++++.   |+.|.+||+.+++  .+..+..+...+..++|+|+++.+++++.  .++.+++|
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~--~~~~v~v~  113 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANY--HKGTAEVM  113 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEET--TTTEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeC--CCCEEEEE
Confidence            4556777899999999 554443   6899999997765  34444555566788999999998887753  27899999


Q ss_pred             EccC-Cc--eEEEeee---------cccCEEEEEecCCCCeEEEecCCCcEEEeeCC-Cceeeeee--eec---CceeEE
Q 021648           84 SLHD-NK--YLRYFKG---------HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLL--RVQ---GRPAAA  145 (309)
Q Consensus        84 d~~~-~~--~~~~~~~---------h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~-~~~~~~~~--~~~---~~~~~~  145 (309)
                      ++.. ++  .+..+..         +...+.+++|+|+++.+++...++.|++||+. +++.....  ...   ......
T Consensus       114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~  193 (347)
T 3hfq_A          114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV  193 (347)
T ss_dssp             EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred             EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence            9963 33  2222221         12348899999999977777789999999987 44332211  111   122467


Q ss_pred             ECCCCcEEEEE--ECCEEEEEECCCCCcCCce-EEEeCCCC------CCCeEEEEccCCCEE-EEEeCCCcEEEEECCC-
Q 021648          146 YDDQGLVFAVA--FGGYIRMFDARKYEKGPFD-IFSVGGDI------SDANVVKFSNDGRLM-LLTTMEGHIHVLDSFR-  214 (309)
Q Consensus       146 ~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~-~~~~~~~~------~~~~~v~~s~dg~~l-~~~~~dg~v~i~d~~~-  214 (309)
                      +++++.++.+.  .++.+.+|++.... +.+. ........      .....++|+|||+++ ++...++.|.+||+.. 
T Consensus       194 ~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~  272 (347)
T 3hfq_A          194 FSPDGQYAFLAGELSSQIASLKYDTQT-GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD  272 (347)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCC-CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence            88888754443  36899999976411 1111 11111111      236779999999977 5666789999999863 


Q ss_pred             C--eEeEEeeecCCCCCccceEEECCCCCEEEEEcCC-CcEEEE--ECCCCceE
Q 021648          215 G--TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-GSVYAW--SVRSGKEV  263 (309)
Q Consensus       215 ~--~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D-g~i~vw--d~~~~~~~  263 (309)
                      +  ..+..+.   .+...+..++|+|||++|++++.+ +.|.+|  |..+++..
T Consensus       273 g~~~~~~~~~---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          273 GHLTLIQQIS---TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             GCEEEEEEEE---CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CcEEEeEEEe---cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            2  3333332   223446789999999999888764 899999  55556543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=1.1e-21  Score=170.67  Aligned_cols=242  Identities=10%  Similarity=0.040  Sum_probs=178.8

Q ss_pred             EEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccc-cceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe
Q 021648           16 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF   94 (309)
Q Consensus        16 ~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~   94 (309)
                      .+++++++.++++++.|++|++||+.+++.++.+..+. ..+..++++|+++.++++..  .++.|.+||+.+++.+..+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~--~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN--HYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC--CCCcEEEEeCCCCcEEEEE
Confidence            45788899999999999999999999999888877543 24678899999987766542  3789999999999887776


Q ss_pred             eecc------cCEEEEEecCCCCeEEEecCC------------CcEEEeeCCCceeeee---eeecC-ceeEEECCCCcE
Q 021648           95 KGHH------DRVVSLSLCSSKDCFISGSLD------------RTVLLWDQRAEKCQGL---LRVQG-RPAAAYDDQGLV  152 (309)
Q Consensus        95 ~~h~------~~v~~v~~~~~~~~l~s~s~D------------g~v~~Wd~~~~~~~~~---~~~~~-~~~~~~~~~~~~  152 (309)
                      ..+.      ..+..+.|+||++++++++.+            +.|.+||+++++....   ...+. .....+++++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l  161 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL  161 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred             EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcE
Confidence            5332      337889999999999988865            9999999987543322   22222 234557777775


Q ss_pred             EEEEECCEEEEEECCCCCcCCceEEEeCC---------------------------------------------------
Q 021648          153 FAVAFGGYIRMFDARKYEKGPFDIFSVGG---------------------------------------------------  181 (309)
Q Consensus       153 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---------------------------------------------------  181 (309)
                      ++  .++.|.+||+...+..  ..+....                                                   
T Consensus       162 ~~--~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  237 (349)
T 1jmx_B          162 YV--AGPDIYKMDVKTGKYT--VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS  237 (349)
T ss_dssp             EE--ESSSEEEECTTTCCEE--EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred             EE--ccCcEEEEeCCCCcee--ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence            44  3455999997653210  0000000                                                   


Q ss_pred             ---------------CCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEE
Q 021648          182 ---------------DISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  245 (309)
Q Consensus       182 ---------------~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s  245 (309)
                                     .......++++| ||++++++  ++.|++||+.+++.+..+...    ..+..++|+|+|++|++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~  311 (349)
T 1jmx_B          238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD----HTYYCVAFDKKGDKLYL  311 (349)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS----SCCCEEEECSSSSCEEE
T ss_pred             EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC----CCccceEECCCCCEEEE
Confidence                           001245667889 99998888  889999999999887766532    23567999999999999


Q ss_pred             EcCCCcEEEEECCCCceEEEeecC
Q 021648          246 GSGDGSVYAWSVRSGKEVASWMSF  269 (309)
Q Consensus       246 ~s~Dg~i~vwd~~~~~~~~~~~~~  269 (309)
                      ++.++.|++||+.+++.+..+...
T Consensus       312 ~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          312 GGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             ESBSSEEEEEETTTTEEEEEEECS
T ss_pred             ecCCCeEEEEeccccceeeeeecC
Confidence            999999999999999888877543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.91  E-value=4.8e-22  Score=176.02  Aligned_cols=288  Identities=11%  Similarity=0.086  Sum_probs=194.1

Q ss_pred             ceEecCCCcceEE-----EEeCCCCCEEEEeeC-CCc--EEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCC
Q 021648            4 GMSFRDYNGRISS-----MDFHKSSSYLVTASD-DES--IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   75 (309)
Q Consensus         4 ~~~~~~h~~~V~~-----i~~s~~~~~l~t~s~-D~~--v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g   75 (309)
                      ..++..|.+....     .+|+|||++|+.++. |+.  |.+||+.+++..+...++...+...+|+|+++.+++++.  
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~--  100 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD--  100 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET--
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC--
Confidence            4566677766666     889999999999987 674  777899999888777766655556789999999998874  


Q ss_pred             CCceeEEEEccCCceEEEeeecccCEEEEE--ecCCCCeEEE----------------------ecCCCcEEEeeCCCce
Q 021648           76 WDESLRLLSLHDNKYLRYFKGHHDRVVSLS--LCSSKDCFIS----------------------GSLDRTVLLWDQRAEK  131 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~--~~~~~~~l~s----------------------~s~Dg~v~~Wd~~~~~  131 (309)
                       +..+++||+.+++....+..+...+....  ++++++.++.                      .+.+..|.+||+.+++
T Consensus       101 -~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (388)
T 3pe7_A          101 -GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE  179 (388)
T ss_dssp             -TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred             -CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence             56899999999988777777766664444  4789988763                      3355789999998876


Q ss_pred             eeeeeeecC-ceeEEECC-CCcEEEEEEC-------CEEEEEECCCCCcCCceEEEeCCCC--CCCeEEEEccCCCEEEE
Q 021648          132 CQGLLRVQG-RPAAAYDD-QGLVFAVAFG-------GYIRMFDARKYEKGPFDIFSVGGDI--SDANVVKFSNDGRLMLL  200 (309)
Q Consensus       132 ~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~v~~s~dg~~l~~  200 (309)
                      ......... .....++| ++..++....       ..|.++|......     ..+....  ..+...+|||||+.|+.
T Consensus       180 ~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~~~~~~~~~~~spdg~~l~~  254 (388)
T 3pe7_A          180 STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-----RKVKTHAEGESCTHEFWVPDGSALVY  254 (388)
T ss_dssp             EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-----EESCCCCTTEEEEEEEECTTSSCEEE
T ss_pred             eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-----EEeeeCCCCcccccceECCCCCEEEE
Confidence            554433222 23456677 7765554432       2677777643221     1122222  13556789999997766


Q ss_pred             EeC-CC----cEEEEECCCCeEeEEeeecCC-CC-CccceEEECCCCCEEEEE---------cCCCcEEEEECCCCceEE
Q 021648          201 TTM-EG----HIHVLDSFRGTLLSTYNVKPV-SR-NSTLEASFSPEGMFVISG---------SGDGSVYAWSVRSGKEVA  264 (309)
Q Consensus       201 ~~~-dg----~v~i~d~~~~~~~~~~~~~~~-~~-~~~~~~~~sp~g~~l~s~---------s~Dg~i~vwd~~~~~~~~  264 (309)
                      .+. ++    .|++||+.+++.......... +. ......+|+|||++|+..         ..+..|++||+.+++. .
T Consensus       255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~  333 (388)
T 3pe7_A          255 VSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-H  333 (388)
T ss_dssp             EEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-E
T ss_pred             EecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-E
Confidence            443 22    399999988875332221110 00 001234799999988854         4566899999988654 4


Q ss_pred             EeecCCC-----------CCcEEEECCCeeEEEEccc---eEEEeeecCC
Q 021648          265 SWMSFDT-----------EPPVIKWTPGSLMFVTGSS---ELSFWIPDLS  300 (309)
Q Consensus       265 ~~~~~~~-----------~v~~l~~~p~~~~l~s~~~---d~~~~~~~~~  300 (309)
                      .+..+..           .+..++|+|||+.|+..+.   ..++|..++.
T Consensus       334 ~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~  383 (388)
T 3pe7_A          334 RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP  383 (388)
T ss_dssp             EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence            5556665           5788999999987776553   3778877764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=9.1e-22  Score=166.63  Aligned_cols=238  Identities=10%  Similarity=0.053  Sum_probs=167.8

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC-Cceeeeeeccc-cceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ..+..|.+.|.+++|+|+|++|++++ |+.|++||+.+ ++....+..+. ..+..++|+|+++.+++++.. .++..++
T Consensus        35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-~~~~~~l  112 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKV-EFGKSAI  112 (297)
T ss_dssp             EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECT-TTSSCEE
T ss_pred             eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeC-CCCcceE
Confidence            35567899999999999999999987 88999999998 88777666653 567889999999998887632 2345666


Q ss_pred             EEc--cCCceEEEeeecccCEEEEEecCCCCeEE-EecCCCcEEEeeCC--Cceeeeeeeec-CceeEEECCCCcEEEEE
Q 021648           83 LSL--HDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQR--AEKCQGLLRVQ-GRPAAAYDDQGLVFAVA  156 (309)
Q Consensus        83 ~d~--~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~Dg~v~~Wd~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  156 (309)
                      |.+  .+++ ...+..+. .+..+.|+|+++.|+ +++.|+.+++|++.  ++......... ......+++++..++.+
T Consensus       113 ~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  190 (297)
T 2ojh_A          113 YLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFN  190 (297)
T ss_dssp             EEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEE
Confidence            654  4444 34444343 489999999999877 78899999999853  33332222211 12345677777655543


Q ss_pred             --ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC-----------CcEEEEECCCCeEeEEeee
Q 021648          157 --FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----------GHIHVLDSFRGTLLSTYNV  223 (309)
Q Consensus       157 --~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d-----------g~v~i~d~~~~~~~~~~~~  223 (309)
                        .++.+++|++..... .  ...+..+...+..++|+|+|++|++++.+           +.|++||+.+++.......
T Consensus       191 ~~~~~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  267 (297)
T 2ojh_A          191 SSRTGQMQIWRVRVDGS-S--VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL  267 (297)
T ss_dssp             ECTTSSCEEEEEETTSS-C--EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred             ecCCCCccEEEECCCCC-C--cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence              368899998753211 1  23333444567788999999999888766           5699999988765433321


Q ss_pred             cCCCCCccceEEECCCCCEEEEEcCCC
Q 021648          224 KPVSRNSTLEASFSPEGMFVISGSGDG  250 (309)
Q Consensus       224 ~~~~~~~~~~~~~sp~g~~l~s~s~Dg  250 (309)
                      . .+...+..++|+|+|++|++++.|.
T Consensus       268 ~-~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          268 F-GGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             E-ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             C-CCCcccccceECCCCCEEEEEEecc
Confidence            1 2345677789999999999987764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=7.4e-20  Score=160.69  Aligned_cols=276  Identities=13%  Similarity=0.192  Sum_probs=178.4

Q ss_pred             CCCCCEEEEee----CCCcEEEEEc--CCCceeeeeeccccceeEEEEecCCCEEEEEcCCC-CCceeEEEEccC--Cce
Q 021648           20 HKSSSYLVTAS----DDESIRLYDV--TAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG-WDESLRLLSLHD--NKY   90 (309)
Q Consensus        20 s~~~~~l~t~s----~D~~v~iWd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g-~d~~i~~~d~~~--~~~   90 (309)
                      .+...++..|+    .++.|.+|++  .+++.......+...+..++|+|+++.+++++..+ .++.+.+|++..  ++.
T Consensus        10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~   89 (361)
T 3scy_A           10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL   89 (361)
T ss_dssp             GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred             CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence            34445666664    4678999976  45554332222455577899999999888876421 247999999876  432


Q ss_pred             --EEEeeecccCEEEEEecCCCCeEEEec-CCCcEEEeeCCCceeeeee----eecC------------ceeEEECCCCc
Q 021648           91 --LRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLL----RVQG------------RPAAAYDDQGL  151 (309)
Q Consensus        91 --~~~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~~~~~~~~~----~~~~------------~~~~~~~~~~~  151 (309)
                        +.....+......+++  ++++|++++ .++++.+|++........+    ...+            ...+.+++++.
T Consensus        90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~  167 (361)
T 3scy_A           90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK  167 (361)
T ss_dssp             EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred             EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence              3333345566777777  777766665 6889999998754322211    1100            12367788887


Q ss_pred             EEEE-EE-CCEEEEEECCCCCcC---C-c------eEEEeCCCCCCCeEEEEccCCCEEEEEe-CCCcEEEEECCCCeEe
Q 021648          152 VFAV-AF-GGYIRMFDARKYEKG---P-F------DIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLL  218 (309)
Q Consensus       152 ~~~~-~~-~~~i~~~d~~~~~~~---~-~------~~~~~~~~~~~~~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~~~~  218 (309)
                      .+.+ .. ++.|++|++......   . +      ..... ........++|+|||+++++.. .++.|.+||+.++.+.
T Consensus       168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~  246 (361)
T 3scy_A          168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV-APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD  246 (361)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred             EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec-CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE
Confidence            4444 43 689999987643210   1 1      11122 2234567899999999877666 6899999999877653


Q ss_pred             E--EeeecCCCCCccceEEECCCCCEEEEEcCC--CcEEEEECC--CCc--eEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648          219 S--TYNVKPVSRNSTLEASFSPEGMFVISGSGD--GSVYAWSVR--SGK--EVASWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       219 ~--~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D--g~i~vwd~~--~~~--~~~~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      .  .....+.+......++|+|||++|+++..+  +.|.+|++.  +++  .+..+.. ...+..++|+|++++|+.++.
T Consensus       247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEET
T ss_pred             EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEEC
Confidence            2  222222222345689999999999776654  899999995  444  3444444 557889999999997777653


Q ss_pred             ---eEEEeeecC
Q 021648          291 ---ELSFWIPDL  299 (309)
Q Consensus       291 ---d~~~~~~~~  299 (309)
                         .+.+|.+++
T Consensus       326 ~~~~v~v~~~d~  337 (361)
T 3scy_A          326 DTNVIQIFERDQ  337 (361)
T ss_dssp             TTTEEEEEEECT
T ss_pred             CCCCEEEEEEEC
Confidence               378877764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=5.3e-22  Score=179.09  Aligned_cols=206  Identities=9%  Similarity=0.104  Sum_probs=150.6

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCce----------eee-----eeccccceeEEEEecCCCEEEEEc-C
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC----------LKT-----INSKKYGVDLVCFTSHPTTVIYSS-K   73 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~----------~~~-----~~~~~~~v~~~~~~~~~~~~~~~s-~   73 (309)
                      +...++.+++++++.++++++.|+ ++||+......          +..     ...+...+..++|+++++.++++. .
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            344688999999999999999998 99987642110          110     012334689999999999888421 1


Q ss_pred             CCCCceeEEEEccCC--------c---eEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCc
Q 021648           74 NGWDESLRLLSLHDN--------K---YLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR  141 (309)
Q Consensus        74 ~g~d~~i~~~d~~~~--------~---~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~  141 (309)
                      ++.|++|++||+.++        +   .+..+.+|.+.|.+++|+|+ ++.|++++.||+|++||++++......     
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~-----  188 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT-----  188 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE-----
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec-----
Confidence            345999999998764        1   24667789999999999998 789999999999999998765321100     


Q ss_pred             eeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEe
Q 021648          142 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  221 (309)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~  221 (309)
                                                            .++...+.+++|+|+|++|++++.||+|++||.+ ++....+
T Consensus       189 --------------------------------------~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~  229 (434)
T 2oit_A          189 --------------------------------------LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI  229 (434)
T ss_dssp             --------------------------------------ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE
T ss_pred             --------------------------------------cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc
Confidence                                                  0122357889999999999999999999999998 5555554


Q ss_pred             eecCC----CCCccceEEECCCCCEEEEE-cCCC------cEEEEECCCC
Q 021648          222 NVKPV----SRNSTLEASFSPEGMFVISG-SGDG------SVYAWSVRSG  260 (309)
Q Consensus       222 ~~~~~----~~~~~~~~~~sp~g~~l~s~-s~Dg------~i~vwd~~~~  260 (309)
                      ..+..    +...+.+++|++++.++++. +.||      .+++|++.+.
T Consensus       230 ~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          230 PCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            43221    12367889999999888654 3443      3899999865

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=4.3e-20  Score=162.18  Aligned_cols=264  Identities=9%  Similarity=0.108  Sum_probs=167.6

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCC----CcEEEEEcCC--Cce--eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648           10 YNGRISSMDFHKSSSYLVTASDD----ESIRLYDVTA--ATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D----~~v~iWd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      |...+..++|+|||++|++++.|    +.|.+|+++.  ++.  +.....+......+++  +++.++++..  .++.+.
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~--~~~~v~  123 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANY--SGGSIT  123 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEET--TTTEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEEC--CCCEEE
Confidence            56677789999999999999886    7999998864  433  2333333334455555  7777776653  378999


Q ss_pred             EEEccCCceEEEe------ee--------cccCEEEEEecCCCCeEE-EecCCCcEEEeeCCCcee------e------e
Q 021648           82 LLSLHDNKYLRYF------KG--------HHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRAEKC------Q------G  134 (309)
Q Consensus        82 ~~d~~~~~~~~~~------~~--------h~~~v~~v~~~~~~~~l~-s~s~Dg~v~~Wd~~~~~~------~------~  134 (309)
                      +|++.....+..+      .+        +...+.+++|+|++++++ +...++.+++|++.....      .      .
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~  203 (361)
T 3scy_A          124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE  203 (361)
T ss_dssp             EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred             EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence            9999754332211      11        223468899999999655 445689999998765431      1      1


Q ss_pred             eeeec---CceeEEECCCCcEEEEEE--CCEEEEEECCCCCcCCceEE-EeCCCCCCCeEEEEccCCCEEEEEeC--CCc
Q 021648          135 LLRVQ---GRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTTM--EGH  206 (309)
Q Consensus       135 ~~~~~---~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~v~~s~dg~~l~~~~~--dg~  206 (309)
                      .....   ......+++++..+.++.  ++.|.+||+........... ...........++|||||++|+++..  ++.
T Consensus       204 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~  283 (361)
T 3scy_A          204 AFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG  283 (361)
T ss_dssp             EEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred             ceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence            11111   123467888887555544  78999999864221111111 11122234568999999998866554  589


Q ss_pred             EEEEECC--CCeEeEEeeecCCCCCccceEEECCCCCEEEEEc-CCCcEEEEEC--CCCceEEEe-ecCCCCCcEEEEC
Q 021648          207 IHVLDSF--RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVYAWSV--RSGKEVASW-MSFDTEPPVIKWT  279 (309)
Q Consensus       207 v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s-~Dg~i~vwd~--~~~~~~~~~-~~~~~~v~~l~~~  279 (309)
                      |.+|++.  ++++....... . ...+..++|+|||++|++++ .++.|.+|++  .+++..... ..+...+.||+|.
T Consensus       284 i~v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          284 VAIFKVDETNGTLTKVGYQL-T-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEEEECTTTCCEEEEEEEE-C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEEEEcCCCCcEEEeeEec-C-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            9999985  45532222211 1 23456799999999998887 6789999654  566554332 1233467888875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=5.6e-20  Score=160.24  Aligned_cols=238  Identities=11%  Similarity=0.137  Sum_probs=174.0

Q ss_pred             ceeEEEEecCCCEEEEEcCCCC----CceeEEEEccCCceEEEeeecccCEEEEEecCCCCe-EEEecCCCcEEEeeCCC
Q 021648           55 GVDLVCFTSHPTTVIYSSKNGW----DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC-FISGSLDRTVLLWDQRA  129 (309)
Q Consensus        55 ~v~~~~~~~~~~~~~~~s~~g~----d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~s~Dg~v~~Wd~~~  129 (309)
                      .+..++++++++.+++++.++.    ++.|.+||..+++.+..+... ..+..+.|+|+++. +++...++.|.+||.++
T Consensus        42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  120 (353)
T 3vgz_A           42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKT  120 (353)
T ss_dssp             SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence            4678899999999888775443    679999999999988877643 45788999999984 55667789999999998


Q ss_pred             ceeeeeeeecC-----------ceeEEECCCCcEEEEEE---CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC
Q 021648          130 EKCQGLLRVQG-----------RPAAAYDDQGLVFAVAF---GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG  195 (309)
Q Consensus       130 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg  195 (309)
                      ++....+....           .....+++++..+..+.   ++.|.+||....+.    ...+.........++++|+|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          121 GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL----KTAIQNTGKMSTGLALDSEG  196 (353)
T ss_dssp             CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE----EEEECCCCTTCCCCEEETTT
T ss_pred             CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce----EEEecCCCCccceEEECCCC
Confidence            88766665432           12356667665444332   68899999875431    22222222346778999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEeEEeeecCC-CCCccceEEECCCCCEEEEEcC-CCcEEEEECCCCceEEEeecCCCCC
Q 021648          196 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-SRNSTLEASFSPEGMFVISGSG-DGSVYAWSVRSGKEVASWMSFDTEP  273 (309)
Q Consensus       196 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~sp~g~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~v  273 (309)
                      +.++++..++.|.+||..+++.+..+..... +...+..++|+|+|++++.++. ++.|++||+.+++.+..+....  .
T Consensus       197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~  274 (353)
T 3vgz_A          197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--S  274 (353)
T ss_dssp             TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--C
T ss_pred             CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--C
Confidence            9999999999999999999998877654221 2334567899999998777655 5899999999998887776433  3


Q ss_pred             cEEEECCCee-EEEEccceEEEeeecC
Q 021648          274 PVIKWTPGSL-MFVTGSSELSFWIPDL  299 (309)
Q Consensus       274 ~~l~~~p~~~-~l~s~~~d~~~~~~~~  299 (309)
                      ..++|+|+++ ++++...+..++.+++
T Consensus       275 ~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          275 LAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             CCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ceEEECCCCCEEEEEECCCCeEEEEEC
Confidence            6799999987 4555545555555544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.88  E-value=3.6e-20  Score=163.31  Aligned_cols=252  Identities=8%  Similarity=0.051  Sum_probs=167.9

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcC-CCceeeeeecc-ccceeEEEEecCCCEE-EEEcC------CC-----C
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVT-AATCLKTINSK-KYGVDLVCFTSHPTTV-IYSSK------NG-----W   76 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~s~------~g-----~   76 (309)
                      ...+..++|+|+|++|++++.+ +|.+||+. +++..+..... ......++++|+++.+ ++.+.      .+     .
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            3467889999999999999988 99999997 77765433211 1124557899999863 33331      01     3


Q ss_pred             CceeEEEEcc-CCceEEEee----ecccCEEEEEecCCCCeEEEec-CCCcEEEeeCC-CceeeeeeeecCceeEEECCC
Q 021648           77 DESLRLLSLH-DNKYLRYFK----GHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQR-AEKCQGLLRVQGRPAAAYDDQ  149 (309)
Q Consensus        77 d~~i~~~d~~-~~~~~~~~~----~h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~-~~~~~~~~~~~~~~~~~~~~~  149 (309)
                      ++++++|++. .++....+.    .+...+.+++|+|||++++++. .++.|++||+. +++......            
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~------------  185 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS------------  185 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE------------
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee------------
Confidence            7899999997 466544443    2556899999999999877665 46799999986 443211000            


Q ss_pred             CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe-CCCcEEEEECC--CCeEeE---Eeee
Q 021648          150 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSF--RGTLLS---TYNV  223 (309)
Q Consensus       150 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~-~dg~v~i~d~~--~~~~~~---~~~~  223 (309)
                                    .             ....+......++|+|||++++++. .++.|.+|+..  ++++..   ....
T Consensus       186 --------------~-------------~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~  238 (365)
T 1jof_A          186 --------------V-------------DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL  238 (365)
T ss_dssp             --------------E-------------ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred             --------------E-------------ecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence                          0             0000012356789999999887766 47899999764  565432   2221


Q ss_pred             cCCC----CC------ccceEE-ECCCCCEEEEEcCCC------cEEEEECC-CCceEE---EeecCCCCCcEEEECC--
Q 021648          224 KPVS----RN------STLEAS-FSPEGMFVISGSGDG------SVYAWSVR-SGKEVA---SWMSFDTEPPVIKWTP--  280 (309)
Q Consensus       224 ~~~~----~~------~~~~~~-~sp~g~~l~s~s~Dg------~i~vwd~~-~~~~~~---~~~~~~~~v~~l~~~p--  280 (309)
                      .+..    ..      .+..++ |+|||++|+++..+.      +|.+|++. +++...   ....+...+..++|+|  
T Consensus       239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~  318 (365)
T 1jof_A          239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCP  318 (365)
T ss_dssp             SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECT
T ss_pred             CCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCC
Confidence            1111    11      366799 999999998776433      89999996 555432   2334566788899999  


Q ss_pred             -CeeEEEEccc---eEEEeeecCCCc
Q 021648          281 -GSLMFVTGSS---ELSFWIPDLSKL  302 (309)
Q Consensus       281 -~~~~l~s~~~---d~~~~~~~~~~~  302 (309)
                       |+++|++++.   .+++|.++...|
T Consensus       319 ~dg~~l~v~~~~~~~v~v~~~~~~~l  344 (365)
T 1jof_A          319 WSDEWMAITDDQEGWLEIYRWKDEFL  344 (365)
T ss_dssp             TCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred             cCCCEEEEEEcCCCeEEEEEEchhhC
Confidence             7888877764   378887776544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.88  E-value=9.1e-20  Score=160.60  Aligned_cols=270  Identities=13%  Similarity=0.088  Sum_probs=185.6

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEee----------CCCcEEEEEcCCCceeeeeecc------ccceeEEEEecCCC
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPT   66 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s----------~D~~v~iWd~~~~~~~~~~~~~------~~~v~~~~~~~~~~   66 (309)
                      +..++..+..+  .+.|+|||+++.++.          .|++|.+||..+++.++++...      ......++++|+++
T Consensus        43 ~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~  120 (361)
T 2oiz_A           43 FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK  120 (361)
T ss_dssp             EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS
T ss_pred             EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC
Confidence            44555555555  899999999988876          3678999999999988887643      12356789999999


Q ss_pred             EEEEEcCCCCCceeEEEEccCCceEEE-eeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCC-ceeeeee------e
Q 021648           67 TVIYSSKNGWDESLRLLSLHDNKYLRY-FKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRA-EKCQGLL------R  137 (309)
Q Consensus        67 ~~~~~s~~g~d~~i~~~d~~~~~~~~~-~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~-~~~~~~~------~  137 (309)
                      +++++.. +.+++|.+||+++++.+.. +. +. ....+.+.|++ ..+++.+.||++.+|+.+. ++.....      .
T Consensus       121 ~l~v~n~-~~~~~v~v~d~~~~~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~  197 (361)
T 2oiz_A          121 FIVLQNA-SPATSIGIVDVAKGDYVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS  197 (361)
T ss_dssp             EEEEEEE-SSSEEEEEEETTTTEEEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred             EEEEECC-CCCCeEEEEECCCCcEEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence            9887753 2267899999999987766 43 22 22345667765 5788889999999999764 4433111      1


Q ss_pred             ecCcee-EEECC-CCcEEEEEECCEEEEEECCCCCcCCceEEEeCC--------CCCCCeEEEEccCCCEEEEEeC----
Q 021648          138 VQGRPA-AAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDGRLMLLTTM----  203 (309)
Q Consensus       138 ~~~~~~-~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~v~~s~dg~~l~~~~~----  203 (309)
                      ....+. ....+ ...++....++.+.++|+..........+.+..        .......++|+||++.+.....    
T Consensus       198 ~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~  277 (361)
T 2oiz_A          198 VKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK  277 (361)
T ss_dssp             TTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred             CCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence            111110 00111 223444556788999997543211111111100        0112233789999776665432    


Q ss_pred             -------CCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCC--ceEEEeecCCCCCc
Q 021648          204 -------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG--KEVASWMSFDTEPP  274 (309)
Q Consensus       204 -------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~--~~~~~~~~~~~~v~  274 (309)
                             .+.|.+||+.+++.+.++...   .  +..++|+|||++|++++. ++|.+||..++  +.+.++..+...+.
T Consensus       278 ~~~~~~~~~~v~viD~~t~~~v~~i~~~---~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~  351 (361)
T 2oiz_A          278 EGTHKFPAAEIWVMDTKTKQRVARIPGR---D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASL  351 (361)
T ss_dssp             TTCTTCCCSEEEEEETTTTEEEEEEECT---T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEE
T ss_pred             cccccCCCceEEEEECCCCcEEEEEecC---C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcE
Confidence                   348999999999998887642   2  678999999999999987 99999999999  88888877777888


Q ss_pred             EEEECCCee
Q 021648          275 VIKWTPGSL  283 (309)
Q Consensus       275 ~l~~~p~~~  283 (309)
                      .++++|+|+
T Consensus       352 ~~~~~p~G~  360 (361)
T 2oiz_A          352 QVQFHPVGG  360 (361)
T ss_dssp             EEEECCCSC
T ss_pred             EEEecCCCC
Confidence            999999985

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=2.5e-21  Score=185.21  Aligned_cols=279  Identities=11%  Similarity=0.074  Sum_probs=184.2

Q ss_pred             EEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecccc---ceeEEEEecCCCEEEEEcCC------CCCceeEEEEcc
Q 021648           16 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY---GVDLVCFTSHPTTVIYSSKN------GWDESLRLLSLH   86 (309)
Q Consensus        16 ~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~s~~------g~d~~i~~~d~~   86 (309)
                      +++|+|+|++++++ .|++|++||+.++++...+..+..   .+..++|+|+++.+++++..      +.++++++||+.
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            78999999666554 699999999999998888776654   48899999999999887631      125899999999


Q ss_pred             CCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--------------------ceeEEE
Q 021648           87 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--------------------RPAAAY  146 (309)
Q Consensus        87 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--------------------~~~~~~  146 (309)
                      +++.+.. ......+..++|+|||+.|+.++ |+.|++||+.+++.........                    .....+
T Consensus        99 ~g~~~~~-~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w  176 (719)
T 1z68_A           99 NGEFVRG-NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW  176 (719)
T ss_dssp             TTEECCS-SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred             CCccccc-eecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence            8875210 11235688999999999999886 8899999998776543221110                    025678


Q ss_pred             CCCCcEEEEEE-CC----------------------------------EEEEEECCCCCcC-CceE---EEeCCCCCCCe
Q 021648          147 DDQGLVFAVAF-GG----------------------------------YIRMFDARKYEKG-PFDI---FSVGGDISDAN  187 (309)
Q Consensus       147 ~~~~~~~~~~~-~~----------------------------------~i~~~d~~~~~~~-~~~~---~~~~~~~~~~~  187 (309)
                      +|++..++.+. +.                                  .|++||+...+.. ...+   ..+.++...+.
T Consensus       177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (719)
T 1z68_A          177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS  256 (719)
T ss_dssp             CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred             CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence            88887666543 31                                  7889987653210 0011   01123344568


Q ss_pred             EEEEccCCCEEEEEeCC----CcEEEEE----CCCCeEeEEee-ecCCCCCccc-----eEEECCCCCEEEE--EcCCC-
Q 021648          188 VVKFSNDGRLMLLTTME----GHIHVLD----SFRGTLLSTYN-VKPVSRNSTL-----EASFSPEGMFVIS--GSGDG-  250 (309)
Q Consensus       188 ~v~~s~dg~~l~~~~~d----g~v~i~d----~~~~~~~~~~~-~~~~~~~~~~-----~~~~sp~g~~l~s--~s~Dg-  250 (309)
                      .++||||++++++....    ..|.+||    ..+++...... ....+...+.     .+.|+|||+.++.  ...+| 
T Consensus       257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~  336 (719)
T 1z68_A          257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGY  336 (719)
T ss_dssp             EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSC
T ss_pred             EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCc
Confidence            89999998877764432    2488899    77766543221 0012233333     6799999996554  44555 


Q ss_pred             -cEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEE-Eccc------eEEEeeecC
Q 021648          251 -SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TGSS------ELSFWIPDL  299 (309)
Q Consensus       251 -~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~-s~~~------d~~~~~~~~  299 (309)
                       .|++||+.+++ ...+..+...+..+.++ +++.++ ++..      ..++|..++
T Consensus       337 ~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          337 KHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             eEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence             57777887665 44555555566777766 665444 4432      278887765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.86  E-value=4.7e-20  Score=163.25  Aligned_cols=282  Identities=10%  Similarity=0.027  Sum_probs=182.2

Q ss_pred             ceEecCCCcc-----eEEEEeCCCCCEEEEeeCC---CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCC
Q 021648            4 GMSFRDYNGR-----ISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   75 (309)
Q Consensus         4 ~~~~~~h~~~-----V~~i~~s~~~~~l~t~s~D---~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g   75 (309)
                      ..++..+...     +..++|+|||++|+.++.+   ..|.+||+.+++..+....+........|+|+++.+++++.  
T Consensus        23 ~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~--  100 (396)
T 3c5m_A           23 VTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN--  100 (396)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEET--
T ss_pred             eEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEc--
Confidence            3445444433     7788999999998777543   36888899888765554443322334789999999988764  


Q ss_pred             CCceeEEEEccCCceEEEeeecccCEEE-------------------EEecCCCCeEEEe-----cCCCcEEEeeCCCce
Q 021648           76 WDESLRLLSLHDNKYLRYFKGHHDRVVS-------------------LSLCSSKDCFISG-----SLDRTVLLWDQRAEK  131 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~~~~~~~h~~~v~~-------------------v~~~~~~~~l~s~-----s~Dg~v~~Wd~~~~~  131 (309)
                       +..+.+||+.+++....+..+......                   +.++|+++.++..     ..+..|.+||+.+++
T Consensus       101 -~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (396)
T 3c5m_A          101 -ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE  179 (396)
T ss_dssp             -TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC
T ss_pred             -CCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc
Confidence             558999999998876666655543333                   3467777766544     457789999998876


Q ss_pred             eeeeeeecC-ceeEEECC-CCc-EEEEEEC------CEEEEEECCCCCcCCceEEEeCCC--CCCCeEEEEccCCCEEEE
Q 021648          132 CQGLLRVQG-RPAAAYDD-QGL-VFAVAFG------GYIRMFDARKYEKGPFDIFSVGGD--ISDANVVKFSNDGRLMLL  200 (309)
Q Consensus       132 ~~~~~~~~~-~~~~~~~~-~~~-~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~v~~s~dg~~l~~  200 (309)
                      ......... .....+++ ++. ++.+..+      ..|.+||+.....     ..+...  ...+..++|||||+.|+.
T Consensus       180 ~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~~~~~~~~~~~spdg~~l~~  254 (396)
T 3c5m_A          180 LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-----RKIKEHAEGESCTHEFWIPDGSAMAY  254 (396)
T ss_dssp             EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-----EESSCCCTTEEEEEEEECTTSSCEEE
T ss_pred             EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-----eEeeccCCCccccceEECCCCCEEEE
Confidence            544433222 22345566 454 3333332      3578888653221     111111  123566899999998777


Q ss_pred             EeCC-----CcEEEEECCCCeEeEEeeecCCCCCccceEEECC-CCCEEEEEc----------------CCCcEEEEECC
Q 021648          201 TTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGS----------------GDGSVYAWSVR  258 (309)
Q Consensus       201 ~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~s~s----------------~Dg~i~vwd~~  258 (309)
                      .+.+     +.|++||+.+++........    . . ...|+| ||++++.++                .+..|++||+.
T Consensus       255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~----~-~-~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          255 VSYFKGQTDRVIYKANPETLENEEVMVMP----P-C-SHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             EEEETTTCCEEEEEECTTTCCEEEEEECC----S-E-EEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred             EecCCCCccceEEEEECCCCCeEEeeeCC----C-C-CCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence            6543     44999999887654332211    1 1 278999 999988765                34789999998


Q ss_pred             CCceEEEeecCCC-----------CCcEEEECCCeeEEEEccc---eEEEeeecCC
Q 021648          259 SGKEVASWMSFDT-----------EPPVIKWTPGSLMFVTGSS---ELSFWIPDLS  300 (309)
Q Consensus       259 ~~~~~~~~~~~~~-----------~v~~l~~~p~~~~l~s~~~---d~~~~~~~~~  300 (309)
                      +++. ..+..+..           .+..++|+||++.|+.++.   ...+|..++.
T Consensus       329 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~  383 (396)
T 3c5m_A          329 AKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVP  383 (396)
T ss_dssp             TTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             cCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEc
Confidence            8764 34445544           2567899999987776654   2567766543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=1.1e-18  Score=151.66  Aligned_cols=230  Identities=8%  Similarity=0.033  Sum_probs=159.4

Q ss_pred             EEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecc-cCEEEEEecCCCCeE-EEecCCCcEEEeeCCCceeeeee
Q 021648           59 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH-DRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLL  136 (309)
Q Consensus        59 ~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l-~s~s~Dg~v~~Wd~~~~~~~~~~  136 (309)
                      +++++++..+++++.   +++|++||+.+++.+..+..+. ..+..++|+|+++.+ ++...++.|.+||+++++....+
T Consensus         5 ~~~~~~~~~~v~~~~---~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            5 PALKAGHEYMIVTNY---PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCTTCEEEEEEET---TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccccCCCEEEEEeCC---CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            345555555555543   7899999999999888877553 257889999999854 56678999999999988776655


Q ss_pred             eecC--------ceeEEECCCCcEEEEEE-------------CCEEEEEECCCCCcC-CceEEEeCCCCCCCeEEEEccC
Q 021648          137 RVQG--------RPAAAYDDQGLVFAVAF-------------GGYIRMFDARKYEKG-PFDIFSVGGDISDANVVKFSND  194 (309)
Q Consensus       137 ~~~~--------~~~~~~~~~~~~~~~~~-------------~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~v~~s~d  194 (309)
                      ....        .....+++++..+.++.             ++.|.+||+...+.. ......   ....+.+++++||
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~d  158 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP---MPRQVYLMRAADD  158 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE---CCSSCCCEEECTT
T ss_pred             EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc---CCCcccceeECCC
Confidence            4322        23467778776555544             489999998753211 112222   1235778899999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEeEEeeecCC------------------------------------------------
Q 021648          195 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV------------------------------------------------  226 (309)
Q Consensus       195 g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~------------------------------------------------  226 (309)
                      |+ +.+++  +.|++||..+++.+..+.....                                                
T Consensus       159 g~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  235 (349)
T 1jmx_B          159 GS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY  235 (349)
T ss_dssp             SC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred             Cc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence            99 44443  3499999988887765542210                                                


Q ss_pred             -----------------CCCccceEEECC-CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEc
Q 021648          227 -----------------SRNSTLEASFSP-EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG  288 (309)
Q Consensus       227 -----------------~~~~~~~~~~sp-~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~  288 (309)
                                       ....+..++|+| ||++++++  ++.|++||+.+++.+..+.. ...+..++|+|+++.|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~  312 (349)
T 1jmx_B          236 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLG  312 (349)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEE
T ss_pred             EEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEe
Confidence                             001233567889 99999998  89999999999988777653 3457899999999877666


Q ss_pred             cceEEEeeecCC
Q 021648          289 SSELSFWIPDLS  300 (309)
Q Consensus       289 ~~d~~~~~~~~~  300 (309)
                      +.+..+++|++.
T Consensus       313 ~~~~~v~v~d~~  324 (349)
T 1jmx_B          313 GTFNDLAVFNPD  324 (349)
T ss_dssp             SBSSEEEEEETT
T ss_pred             cCCCeEEEEecc
Confidence            666555555543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.85  E-value=1.3e-18  Score=151.20  Aligned_cols=252  Identities=12%  Similarity=0.187  Sum_probs=179.7

Q ss_pred             cceEEEEeCCCCCEEEEeeCC------------------------CcEEEEEcCCCceeeeeec-cccceeEEEEecCCC
Q 021648           12 GRISSMDFHKSSSYLVTASDD------------------------ESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPT   66 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D------------------------~~v~iWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~   66 (309)
                      +.+.+|+++|+|+++++.+.+                        ++|.+||..+++.+..+.. +-.....+++.++++
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            579999999999999998888                        4799999998988766653 223577899999988


Q ss_pred             EEEEEcCCCCCceeEEEEccCCc-eEEEe---------eecccCEEEEEecC-CCCeEEEec-CCCcEEEeeCCCceeee
Q 021648           67 TVIYSSKNGWDESLRLLSLHDNK-YLRYF---------KGHHDRVVSLSLCS-SKDCFISGS-LDRTVLLWDQRAEKCQG  134 (309)
Q Consensus        67 ~~~~~s~~g~d~~i~~~d~~~~~-~~~~~---------~~h~~~v~~v~~~~-~~~~l~s~s-~Dg~v~~Wd~~~~~~~~  134 (309)
                      .+++..   .++.|++||..... .+..+         .++......++++| +++.+++.+ .++.|++||. +++...
T Consensus       104 l~v~d~---~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~  179 (329)
T 3fvz_A          104 YWVTDV---ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVT  179 (329)
T ss_dssp             EEEEET---TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEE
T ss_pred             EEEEEC---CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEE
Confidence            544433   26799999986542 45555         34566799999999 788888887 6999999994 443332


Q ss_pred             eeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECC
Q 021648          135 LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSF  213 (309)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~  213 (309)
                      .+...+.                +.          ...+       +.......++++|+ |+++++...+++|++||..
T Consensus       180 ~~~~~g~----------------~~----------~~~~-------~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          180 QWGEESS----------------GS----------SPRP-------GQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             EECEECC----------------SS----------SCCT-------TEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EeccCCC----------------CC----------CCCC-------cccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence            2211000                00          0000       01123568899998 8888888999999999998


Q ss_pred             CCeEeEEeeecCCCCCccceEEECC------CCCEEEEEcCCCcEEEEECCCCceEEEee---cCCCCCcEEEECCCeeE
Q 021648          214 RGTLLSTYNVKPVSRNSTLEASFSP------EGMFVISGSGDGSVYAWSVRSGKEVASWM---SFDTEPPVIKWTPGSLM  284 (309)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~sp------~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~---~~~~~v~~l~~~p~~~~  284 (309)
                      +++.+..+... .....+..++|+|      +|+.+++.+.+..|++||..+++.+..+.   .+-..+..|+++|+|.+
T Consensus       227 ~G~~~~~~~~~-~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~l  305 (329)
T 3fvz_A          227 TKEFVREIKHA-SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTV  305 (329)
T ss_dssp             TCCEEEEECCT-TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEE
T ss_pred             CCcEEEEEecc-ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCE
Confidence            89888876533 2334567889999      44433334445699999999999888873   55566889999999998


Q ss_pred             EEEccceEEEeeecCCC
Q 021648          285 FVTGSSELSFWIPDLSK  301 (309)
Q Consensus       285 l~s~~~d~~~~~~~~~~  301 (309)
                      +++...+.+++.+++..
T Consensus       306 yvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          306 YIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEESSSCCEEEEEEEE
T ss_pred             EEEECCCCEEEEEeCCc
Confidence            88887775555555443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=4.4e-20  Score=177.38  Aligned_cols=275  Identities=8%  Similarity=0.066  Sum_probs=182.1

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccc---e--eEEEEecCCCEEEEEcCC------CCCc
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYG---V--DLVCFTSHPTTVIYSSKN------GWDE   78 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~---v--~~~~~~~~~~~~~~~s~~------g~d~   78 (309)
                      +.....++.|+|||.+++++  |++|++||+.++++...+.++...   +  ...+|+||++.+++++..      ...+
T Consensus        15 ~~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           15 YRLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             SCCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            34456789999999999886  999999999999998888777543   2  237889999999887631      0115


Q ss_pred             eeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC------------------
Q 021648           79 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG------------------  140 (309)
Q Consensus        79 ~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~------------------  140 (309)
                      .+.+||+++++.. .+..|.+.+..+.|+|||+.|+.++ |+.|.+||..+++.........                  
T Consensus        93 ~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           93 SYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            6779999998754 4677888999999999999998885 7899999988766432211000                  


Q ss_pred             --ceeEEECCCCcEEEEE-E-CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC--
Q 021648          141 --RPAAAYDDQGLVFAVA-F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR--  214 (309)
Q Consensus       141 --~~~~~~~~~~~~~~~~-~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~--  214 (309)
                        .....++|++..++.. . +..+++|++.......       ........+.+.+.|..    ....+|++||+.+  
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~-------~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~  239 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES-------LQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLS  239 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT-------CSSCEEEEEECCBTTSC----CCEEEEEEEETTSCC
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC-------CCCCcceeecCCCCcCc----CCeeEEEEEECCCCC
Confidence              1125678888765544 3 3457777654322110       11223455667666643    1223688999988  


Q ss_pred             -CeE--eEEeeecC---CCCCccceEEECCCCCEEEEEc----CCCcEEEEECCCCc----e--EEEe--ecCCCCCc--
Q 021648          215 -GTL--LSTYNVKP---VSRNSTLEASFSPEGMFVISGS----GDGSVYAWSVRSGK----E--VASW--MSFDTEPP--  274 (309)
Q Consensus       215 -~~~--~~~~~~~~---~~~~~~~~~~~sp~g~~l~s~s----~Dg~i~vwd~~~~~----~--~~~~--~~~~~~v~--  274 (309)
                       ++.  ...+....   .+...+..++|||||+.++...    .+..|++||+.+++    +  +..+  ..|...+.  
T Consensus       240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~  319 (740)
T 4a5s_A          240 SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF  319 (740)
T ss_dssp             SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred             CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccC
Confidence             731  22222100   1345577899999999766653    33479999999887    2  2222  34555444  


Q ss_pred             ---EEEECCCeeEEE-Eccce---EEEeeecC
Q 021648          275 ---VIKWTPGSLMFV-TGSSE---LSFWIPDL  299 (309)
Q Consensus       275 ---~l~~~p~~~~l~-s~~~d---~~~~~~~~  299 (309)
                         .++|+|||+.++ ..+..   .++|.+++
T Consensus       320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~  351 (740)
T 4a5s_A          320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQI  351 (740)
T ss_dssp             SCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred             cCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence               789999998776 55432   55555443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=2.7e-20  Score=173.95  Aligned_cols=236  Identities=10%  Similarity=0.027  Sum_probs=164.8

Q ss_pred             eeeeec-cccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecc-cCEEEEEecCCCCeEEEecC---CC
Q 021648           46 LKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH-DRVVSLSLCSSKDCFISGSL---DR  120 (309)
Q Consensus        46 ~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~s~---Dg  120 (309)
                      ++.++. ...++..++|+|||+.+++++.  .|+++++|++.+++.. .+..|. ..+..+.|+|| +.+++++.   +.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~DG~~la~~s~--~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~   88 (582)
T 3o4h_A           13 VRDVERLIAVEKYSLQGVVDGDKLLVVGF--SEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAE   88 (582)
T ss_dssp             HHHHHHHHHSCEEEEEEEETTTEEEEEEE--ETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSC
T ss_pred             HHHHHHHhccchheeecCCCCCeEEEEEc--cCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCc
Confidence            344442 3557999999999999998764  2789999999776654 445555 68999999999 77777765   56


Q ss_pred             cEEEeeCCC---ceeeeeeeecCceeEEE--CCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC
Q 021648          121 TVLLWDQRA---EKCQGLLRVQGRPAAAY--DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG  195 (309)
Q Consensus       121 ~v~~Wd~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg  195 (309)
                      ..++|.+..   +...............+  +.++.+++...++.+.+||+...+.   .....  ..  ...+++||||
T Consensus        89 ~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~---~~l~~--~~--~~~~~~spDG  161 (582)
T 3o4h_A           89 QHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL---RELAR--LP--GFGFVSDIRG  161 (582)
T ss_dssp             CEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE---EEEEE--ES--SCEEEEEEET
T ss_pred             ceEEEEEeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE---EEeec--CC--CceEEECCCC
Confidence            666765432   22222211222222333  3444566666666677999865321   11111  11  1788999999


Q ss_pred             CEEEEEeCC----CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC--cEEEEECCCCceEEEeecC
Q 021648          196 RLMLLTTME----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--SVYAWSVRSGKEVASWMSF  269 (309)
Q Consensus       196 ~~l~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg--~i~vwd~~~~~~~~~~~~~  269 (309)
                      +.+++++.+    +.|++||+.+++.. .+.   .+...+..++|||||++|+++..|+  .|++||+.+++.. .+..|
T Consensus       162 ~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~  236 (582)
T 3o4h_A          162 DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD---SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP  236 (582)
T ss_dssp             TEEEEEEEEETTEEEEEEEETTTCCCE-EEC---CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS
T ss_pred             CEEEEEEEcCCCCeEEEEEcCCCCCce-Eee---cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC
Confidence            999988776    78999999887765 332   2345567899999999999888898  8999999998877 66777


Q ss_pred             CCCCcEEE--------ECCCeeEEEEccce--EEEeee
Q 021648          270 DTEPPVIK--------WTPGSLMFVTGSSE--LSFWIP  297 (309)
Q Consensus       270 ~~~v~~l~--------~~p~~~~l~s~~~d--~~~~~~  297 (309)
                      ...+..++        |+||++++++++.+  .++|..
T Consensus       237 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          237 SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            77777777        99999888888776  555654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=2.5e-19  Score=171.37  Aligned_cols=263  Identities=9%  Similarity=0.102  Sum_probs=172.4

Q ss_pred             ceEEEEeCCCCCEEEEeeC---------CCcEEEEEcCCCcee--eeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648           13 RISSMDFHKSSSYLVTASD---------DESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~---------D~~v~iWd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      .|.+++|||||++||+++.         |++|++||+.+++.+  ..+.   ..+..++|+|+++.+++++    +++|+
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~----~~~i~  133 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY----QNNIY  133 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE----TTEEE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC---cccccceECCCCCEEEEEE----CCeEE
Confidence            3899999999999999887         799999999998873  2232   3577899999999999875    67999


Q ss_pred             EEEccCCceEEEe-eecccCE-----------------EEEEecCCCCeEEEecCCC-----------------------
Q 021648           82 LLSLHDNKYLRYF-KGHHDRV-----------------VSLSLCSSKDCFISGSLDR-----------------------  120 (309)
Q Consensus        82 ~~d~~~~~~~~~~-~~h~~~v-----------------~~v~~~~~~~~l~s~s~Dg-----------------------  120 (309)
                      +||+.+++.+... .++...|                 .++.|+|||+.|++++.|.                       
T Consensus       134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (719)
T 1z68_A          134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP  213 (719)
T ss_dssp             EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred             EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence            9999888765432 3443333                 4899999999999988663                       


Q ss_pred             -----------cEEEeeCCCceee--eeee------ecC--ceeEEECCCCcEEEEEEC-----CEEEEEE----CCCCC
Q 021648          121 -----------TVLLWDQRAEKCQ--GLLR------VQG--RPAAAYDDQGLVFAVAFG-----GYIRMFD----ARKYE  170 (309)
Q Consensus       121 -----------~v~~Wd~~~~~~~--~~~~------~~~--~~~~~~~~~~~~~~~~~~-----~~i~~~d----~~~~~  170 (309)
                                 ++++||+.+++..  ..+.      ...  .....+++++.++....+     ..|.+||    +...+
T Consensus       214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~  293 (719)
T 1z68_A          214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD  293 (719)
T ss_dssp             CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred             CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence                       7889999877642  0111      011  234567788776665432     2588888    65432


Q ss_pred             cCCceEEEeCCCCCCCe-----EEEEccCCCEEEE--EeCCC--cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648          171 KGPFDIFSVGGDISDAN-----VVKFSNDGRLMLL--TTMEG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  241 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~-----~v~~s~dg~~l~~--~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~  241 (309)
                      ...+......++...+.     .+.|||||+.++.  ...+|  +|.+||+..+.. ..+.   .+...+..+.++ +++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt---~~~~~v~~~~~~-d~~  368 (719)
T 1z68_A          294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQIT---SGKWEAINIFRV-TQD  368 (719)
T ss_dssp             CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECS---CSSSCEEEEEEE-CSS
T ss_pred             eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Eecc---cCceEEEEEEEE-eCC
Confidence            21111000012223333     6789999996554  44555  577778766552 2222   122335556666 887


Q ss_pred             EEEEEcCC-----CcEEEEECCC--Cc-eEEEee----cCCCCCcEEEECCCeeEEEE
Q 021648          242 FVISGSGD-----GSVYAWSVRS--GK-EVASWM----SFDTEPPVIKWTPGSLMFVT  287 (309)
Q Consensus       242 ~l~s~s~D-----g~i~vwd~~~--~~-~~~~~~----~~~~~v~~l~~~p~~~~l~s  287 (309)
                      .|+..+.+     +..++|.+..  +. ....+.    +|...+..+.|+|+++.++.
T Consensus       369 ~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~  426 (719)
T 1z68_A          369 SLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYAL  426 (719)
T ss_dssp             EEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEE
T ss_pred             EEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEE
Confidence            77766654     8899998754  32 123332    25566778999999886664

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=3e-19  Score=161.11  Aligned_cols=199  Identities=13%  Similarity=0.078  Sum_probs=140.0

Q ss_pred             CCcceEEEEeCCCCCEEE----EeeCCCcEEEEEcCCC--------ce---eeeeeccccceeEEEEecC-CCEEEEEcC
Q 021648           10 YNGRISSMDFHKSSSYLV----TASDDESIRLYDVTAA--------TC---LKTINSKKYGVDLVCFTSH-PTTVIYSSK   73 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~----t~s~D~~v~iWd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~~~~~s~   73 (309)
                      |.+.|.+++|+|+|++|+    +|+.|++|+|||+.++        +.   ++.+.+|...|..++|+|+ +..+++++.
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            567899999999999999    8999999999999765        22   4556678889999999998 667776654


Q ss_pred             CCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec---------CceeE
Q 021648           74 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---------GRPAA  144 (309)
Q Consensus        74 ~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~---------~~~~~  144 (309)
                         |++|++||+++++.+....+|...|.+++|+|++++|++|+.||+|++||++ ++....+..+         .....
T Consensus       171 ---Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v  246 (434)
T 2oit_A          171 ---DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV  246 (434)
T ss_dssp             ---TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred             ---CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence               8899999999987777778899999999999999999999999999999998 3333333211         11234


Q ss_pred             EECCCCcEEEEEE--CC------EEEEEECCCCCcC-CceEEEe-------CCCCCCCeEEEEccCCCEEEEEeC-CCcE
Q 021648          145 AYDDQGLVFAVAF--GG------YIRMFDARKYEKG-PFDIFSV-------GGDISDANVVKFSNDGRLMLLTTM-EGHI  207 (309)
Q Consensus       145 ~~~~~~~~~~~~~--~~------~i~~~d~~~~~~~-~~~~~~~-------~~~~~~~~~v~~s~dg~~l~~~~~-dg~v  207 (309)
                      .+.++..++++..  +|      .+++|++++.... +......       .+.......+..-++.+++++++. ...|
T Consensus       247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv  326 (434)
T 2oit_A          247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEV  326 (434)
T ss_dssp             EEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBC
T ss_pred             EEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCce
Confidence            4555555554332  22      4899999864321 1111111       122233333444477777665544 5567


Q ss_pred             EEEEC
Q 021648          208 HVLDS  212 (309)
Q Consensus       208 ~i~d~  212 (309)
                      .++..
T Consensus       327 ~vl~~  331 (434)
T 2oit_A          327 SILAR  331 (434)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            77664

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.83  E-value=3.4e-18  Score=161.90  Aligned_cols=289  Identities=12%  Similarity=0.052  Sum_probs=191.0

Q ss_pred             EecCCCcceEEEEeCCCCCEEEEe--eCCCcEEEEEcCCCceeeeeecccccee---------EEEEe--cCCCE-EEEE
Q 021648            6 SFRDYNGRISSMDFHKSSSYLVTA--SDDESIRLYDVTAATCLKTINSKKYGVD---------LVCFT--SHPTT-VIYS   71 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~~~~~l~t~--s~D~~v~iWd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-~~~~   71 (309)
                      .+.+|...|..++|++++-++++.  +.|+..+||....+...+.+..+...+.         ...++  |+++. ++++
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            456799999999999987777777  6689999999654444555555544444         45455  89998 7776


Q ss_pred             cCCCCCceeEEEEcc--CCceEEEeee-----cccCEEEEEecCCCCeEEEecCC----------CcEEEeeCCC-----
Q 021648           72 SKNGWDESLRLLSLH--DNKYLRYFKG-----HHDRVVSLSLCSSKDCFISGSLD----------RTVLLWDQRA-----  129 (309)
Q Consensus        72 s~~g~d~~i~~~d~~--~~~~~~~~~~-----h~~~v~~v~~~~~~~~l~s~s~D----------g~v~~Wd~~~-----  129 (309)
                      +..  +..|.++++.  .......+..     |...+..++|+|||+.|+.++.|          ..|.+||+.+     
T Consensus        98 ~~~--~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           98 HFG--DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             BTT--TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             ECC--CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            532  4566666665  2033455555     67789999999999999998877          5899999987     


Q ss_pred             -ceeeeee-eecC-ceeEEECCCCcEEEE-EEC--------CEEEEEECC-CCCcCCceEEEeCCCCCCCeEEEEccCCC
Q 021648          130 -EKCQGLL-RVQG-RPAAAYDDQGLVFAV-AFG--------GYIRMFDAR-KYEKGPFDIFSVGGDISDANVVKFSNDGR  196 (309)
Q Consensus       130 -~~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~--------~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  196 (309)
                       +...... .... .....+++++..++. ..+        ..|++||+. ........... .++...+..++|||||+
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-~~~~~~~~~~~~spdg~  254 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-GGPEEAIAQAEWAPDGS  254 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-EETTBCEEEEEECTTSC
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-CCCCceEcceEECCCCe
Confidence             5443322 1111 223467888876654 434        379999986 32110111111 12234678899999999


Q ss_pred             EEEEEeCCC--cEEEEECCCCeEeEEeeecCCCCC-----ccceEEECCCCCEEEEEcCCCcEEEE--ECCCCceEEEee
Q 021648          197 LMLLTTMEG--HIHVLDSFRGTLLSTYNVKPVSRN-----STLEASFSPEGMFVISGSGDGSVYAW--SVRSGKEVASWM  267 (309)
Q Consensus       197 ~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~-----~~~~~~~sp~g~~l~s~s~Dg~i~vw--d~~~~~~~~~~~  267 (309)
                      +++++..++  .|.+||..+++.............     .+..++|+|+++.+++++. +.++||  |+.+++ +..+.
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~  332 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA  332 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC
T ss_pred             EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec
Confidence            887887788  677777666665432221100000     1346899999999999999 999999  555554 66777


Q ss_pred             cCCCCCcEE-EECCCeeEEEEccce--EEEeeecC
Q 021648          268 SFDTEPPVI-KWTPGSLMFVTGSSE--LSFWIPDL  299 (309)
Q Consensus       268 ~~~~~v~~l-~~~p~~~~l~s~~~d--~~~~~~~~  299 (309)
                      .|...+..+ +++++...+++++.+  ..+|.+++
T Consensus       333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~  367 (662)
T 3azo_A          333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDT  367 (662)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred             CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence            777667767 665555566665544  56776654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.82  E-value=1.3e-17  Score=146.88  Aligned_cols=272  Identities=6%  Similarity=-0.000  Sum_probs=184.3

Q ss_pred             CCCCEEEEe------eCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcC-------CCCCceeEEEEccC
Q 021648           21 KSSSYLVTA------SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-------NGWDESLRLLSLHD   87 (309)
Q Consensus        21 ~~~~~l~t~------s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~-------~g~d~~i~~~d~~~   87 (309)
                      ++++++...      ..|++|.+||..+++.+.++..+..+  .++|+|++++++++..       +..++.|.+||..+
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t   90 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK   90 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence            355555443      24889999999999988888776655  7899999998887752       12367899999999


Q ss_pred             CceEEEeeec------ccCEEEEEecCCCCeEEEecC--CCcEEEeeCCCceeeee-eeecCceeEEECCC--CcEEEEE
Q 021648           88 NKYLRYFKGH------HDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGL-LRVQGRPAAAYDDQ--GLVFAVA  156 (309)
Q Consensus        88 ~~~~~~~~~h------~~~v~~v~~~~~~~~l~s~s~--Dg~v~~Wd~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~  156 (309)
                      .+.+..+...      ......+.++||+++|+.+..  +++|.+||+++++.... +...........+.  ..+++.+
T Consensus        91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~  170 (361)
T 2oiz_A           91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC  170 (361)
T ss_dssp             CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred             CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence            8888777643      234667899999999988864  68999999999887766 55443322233333  3566666


Q ss_pred             ECCEEEEEECCCCCcCCce-EEE----eCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe--EeEEeeecC----
Q 021648          157 FGGYIRMFDARKYEKGPFD-IFS----VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT--LLSTYNVKP----  225 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~-~~~----~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~~----  225 (309)
                      .|+.+.+|+.....  ... ...    .... .....+.++|++..++..+.++.|+++|.....  ....+....    
T Consensus       171 ~dg~~~~v~~~~~g--~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~  247 (361)
T 2oiz_A          171 GDGGLLTINLGEDG--KVASQSRSKQMFSVK-DDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK  247 (361)
T ss_dssp             TTSSEEEEEECTTS--SEEEEEECCCCSCTT-TSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred             CCCcEEEEEECCCC--cEeeeccccceEcCC-CCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence            78888888864311  111 000    0011 111233457888888888889999999986543  222222110    


Q ss_pred             -CC--CCccceEEECCCCCEEEEEcC-----------CCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc-
Q 021648          226 -VS--RNSTLEASFSPEGMFVISGSG-----------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS-  290 (309)
Q Consensus       226 -~~--~~~~~~~~~sp~g~~l~s~s~-----------Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~-  290 (309)
                       ..  .....-++|+||+++++.+..           +..|.+||+.+++.+.++..+.  +..++|+||+++|.+++. 
T Consensus       248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~  325 (361)
T 2oiz_A          248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGG  325 (361)
T ss_dssp             HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSS
T ss_pred             ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCC
Confidence             00  011113789999888877643           3489999999999999988776  999999999987766554 


Q ss_pred             eEEEeeecC
Q 021648          291 ELSFWIPDL  299 (309)
Q Consensus       291 d~~~~~~~~  299 (309)
                      .+.+|..+-
T Consensus       326 ~v~v~D~~t  334 (361)
T 2oiz_A          326 NVNVYDISQ  334 (361)
T ss_dssp             CEEEEECSS
T ss_pred             eEEEEECCC
Confidence            477776543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=1e-16  Score=135.96  Aligned_cols=243  Identities=11%  Similarity=0.184  Sum_probs=168.6

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec------cccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS------KKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      +|-..+.+++++|+++++++...++.|++||.. ++.+..+..      +...+..+++.+....++++.. +.++.|++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~-~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER-SPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC-GGGCEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcC-CCCCEEEE
Confidence            344678999999999999999999999999987 666655532      2234677888533334444431 12678999


Q ss_pred             EEccCCceEEEee-ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec----CceeEEECCCCcEEEEE-
Q 021648           83 LSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVA-  156 (309)
Q Consensus        83 ~d~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-  156 (309)
                      || .+++.+..+. .+...+.++++.++++.+++...++.|.+||.. ++....+...    ....+++++++.++.+. 
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence            99 5666666664 344678999999999988888889999999964 3433333211    12345677777766655 


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC-cEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  235 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      .++.|++||....   ....+...+.......++++|+|+++++...++ .|++||. +++.+..+.... ....+..++
T Consensus       183 ~~~~i~~~~~~g~---~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~~i~  257 (286)
T 1q7f_A          183 RAHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV-KHAQCFDVA  257 (286)
T ss_dssp             GGTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-CCSCEEEEE
T ss_pred             CCCEEEEEcCCCC---EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC-CCCcceeEE
Confidence            3789999996421   111121122234678899999999999988886 9999995 566666665432 223456899


Q ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCc
Q 021648          236 FSPEGMFVISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       236 ~sp~g~~l~s~s~Dg~i~vwd~~~~~  261 (309)
                      ++|+|+.+++ +.|++|++|++....
T Consensus       258 ~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          258 LMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             ECCCCcEEEE-CCCCeEEEEEccccc
Confidence            9999987777 579999999986543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=1.8e-18  Score=152.88  Aligned_cols=244  Identities=10%  Similarity=0.045  Sum_probs=161.9

Q ss_pred             EEEEcCCCceeeeeeccccceeE-----EEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCC
Q 021648           36 RLYDVTAATCLKTINSKKYGVDL-----VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK  110 (309)
Q Consensus        36 ~iWd~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~  110 (309)
                      ..+|..++..+..+..+......     .+|+|+++.+++++..+....+.+||+.+++......+|...+..+.|+||+
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg   92 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD   92 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence            44577788888777766544444     7899999999988752223468888999998877777777666677899999


Q ss_pred             CeEEEecCCCcEEEeeCCCceeeeeeeecCce----eEEECCCCcEEEEE-----------------------ECCEEEE
Q 021648          111 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP----AAAYDDQGLVFAVA-----------------------FGGYIRM  163 (309)
Q Consensus       111 ~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----------------------~~~~i~~  163 (309)
                      +.|+.++.++.+.+||+.+++.......+...    ....++++..++..                       .+..|.+
T Consensus        93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  172 (388)
T 3pe7_A           93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR  172 (388)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence            99999999999999999988765544433221    12346666665532                       2357899


Q ss_pred             EECCCCCcCCceEEEeCCCCCCCeEEEEcc-CCCEEEEEeCC------CcEEEEECCCCeEeEEeeecCCCC-CccceEE
Q 021648          164 FDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPVSR-NSTLEAS  235 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~  235 (309)
                      ||+...+.   ....  .....+..++||| ||+.++....+      ..|.++|...+.... +..  ... ..+...+
T Consensus       173 ~d~~~g~~---~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~--~~~~~~~~~~~  244 (388)
T 3pe7_A          173 VDLKTGES---TVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKT--HAEGESCTHEF  244 (388)
T ss_dssp             EETTTCCE---EEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCC--CCTTEEEEEEE
T ss_pred             EECCCCce---EEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eee--CCCCcccccce
Confidence            99875432   1111  2223567889999 99998877653      378888876554332 211  111 2355678


Q ss_pred             ECCCCCEEEEEcCC-C----cEEEEECCCCce--EEEeecCC---CCCcEEEECCCeeEEEE
Q 021648          236 FSPEGMFVISGSGD-G----SVYAWSVRSGKE--VASWMSFD---TEPPVIKWTPGSLMFVT  287 (309)
Q Consensus       236 ~sp~g~~l~s~s~D-g----~i~vwd~~~~~~--~~~~~~~~---~~v~~l~~~p~~~~l~s  287 (309)
                      |||||+.|+..+.+ +    .|++||+.+++.  +..+..+.   .....++|+|||+.|+.
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~  306 (388)
T 3pe7_A          245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPV  306 (388)
T ss_dssp             ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--
T ss_pred             ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCccee
Confidence            99999988665442 2    399999998874  33333210   11333579999987764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.80  E-value=5.3e-17  Score=140.71  Aligned_cols=277  Identities=11%  Similarity=0.177  Sum_probs=186.6

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   90 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~   90 (309)
                      +..|.++.|+|++..+++.+.+++++.|   .++....+..+...+..++|+++++..++...   ++.|.+||.++++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---~~~i~~~d~~~~~~   78 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVF---EGNIFKINPETKEI   78 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETT---TCEEEEECTTTCCE
T ss_pred             ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECC---CCEEEEEeCCCCcE
Confidence            4568899999999888888899999999   35566666666566788899998874444432   67899999998876


Q ss_pred             EEEeeecccCEEEEEecCCCCeEEEecCC----CcEEEeeCCCceeeeeeee--c--CceeEEECCCCcEEEEEEC----
Q 021648           91 LRYFKGHHDRVVSLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLLRV--Q--GRPAAAYDDQGLVFAVAFG----  158 (309)
Q Consensus        91 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~D----g~v~~Wd~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~----  158 (309)
                      ......+...+.+++++++++.+++...+    +.|.+||.+++.....+..  .  ......+++++.++.+...    
T Consensus        79 ~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~  158 (333)
T 2dg1_A           79 KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYST  158 (333)
T ss_dssp             EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTT
T ss_pred             EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccccc
Confidence            65555677889999999999988887766    6899999887664422221  1  1224566777777766542    


Q ss_pred             ---CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEE-EEEeCCCcEEEEECCC-CeEeEEee----ecCCCCC
Q 021648          159 ---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFR-GTLLSTYN----VKPVSRN  229 (309)
Q Consensus       159 ---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l-~~~~~dg~v~i~d~~~-~~~~~~~~----~~~~~~~  229 (309)
                         +.|..+|....   .+..+.  ........++++|+|+.+ ++...++.|.+||..+ +..+..+.    .......
T Consensus       159 ~~~~~l~~~~~~~~---~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~  233 (333)
T 2dg1_A          159 NPLGGVYYVSPDFR---TVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE  233 (333)
T ss_dssp             BCCEEEEEECTTSC---CEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSS
T ss_pred             CCCceEEEEeCCCC---EEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCC
Confidence               45666654321   121111  111246789999999855 5556688999999863 33222111    0000113


Q ss_pred             ccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCC------CCcEEEECCCee-EEEEccc-----eEEEeee
Q 021648          230 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT------EPPVIKWTPGSL-MFVTGSS-----ELSFWIP  297 (309)
Q Consensus       230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~------~v~~l~~~p~~~-~l~s~~~-----d~~~~~~  297 (309)
                      .+..++++|+|+.+++...++.|.+||. +++.+..+.....      .+..++|+||++ ++++...     ...+|..
T Consensus       234 ~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~  312 (333)
T 2dg1_A          234 GPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTV  312 (333)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEE
T ss_pred             CCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEE
Confidence            4567899999999888888899999998 5666666654332      588999999975 4444443     1456654


Q ss_pred             cC
Q 021648          298 DL  299 (309)
Q Consensus       298 ~~  299 (309)
                      ++
T Consensus       313 ~~  314 (333)
T 2dg1_A          313 NG  314 (333)
T ss_dssp             EC
T ss_pred             ec
Confidence            43

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.79  E-value=9.7e-17  Score=139.71  Aligned_cols=264  Identities=8%  Similarity=0.045  Sum_probs=171.7

Q ss_pred             cceEEEEeCCCCCEEEEee---------CCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCC--CCcee
Q 021648           12 GRISSMDFHKSSSYLVTAS---------DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESL   80 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s---------~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g--~d~~i   80 (309)
                      ..+....+  ||++++-..         .++.|.+||+.+++... +    ..+...+|+|+++.+++.+..+  ....|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            45677788  898887642         36789999998876543 3    3467889999999998876432  23458


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCC---------------------------CcEEEeeCCCceee
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD---------------------------RTVLLWDQRAEKCQ  133 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D---------------------------g~v~~Wd~~~~~~~  133 (309)
                      .+||+.+++.......+ . +..+.|+||++.|+.++.+                           ..|.+||+.+++..
T Consensus        88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~  165 (347)
T 2gop_A           88 WVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI  165 (347)
T ss_dssp             EEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred             EEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence            88888888766555444 4 9999999999988887643                           57889999887762


Q ss_pred             eeeeecCceeEEECCCCcEEEEEE-C------C-EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC-
Q 021648          134 GLLRVQGRPAAAYDDQGLVFAVAF-G------G-YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-  204 (309)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~-~------~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d-  204 (309)
                      ..+.........+++++ ++.++. +      . ...+|.+..   +.......  . ..+.  .+||||+.++..+.+ 
T Consensus       166 ~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~---~~~~~l~~--~-~~~~--~~spdg~~l~~~~~~~  236 (347)
T 2gop_A          166 EEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED---GKEEKMFE--K-VSFY--AVDSDGERILLYGKPE  236 (347)
T ss_dssp             EEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET---TEEEEEEE--E-ESEE--EEEECSSCEEEEECCS
T ss_pred             eeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCC---CceEEecc--C-ccee--eECCCCCEEEEEEccc
Confidence            33322233345666777 555443 2      1 344554332   11121111  1 2233  349999998887754 


Q ss_pred             -------CcEEEEECCCCeEeEEeeecCCCCCccce-EEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEE
Q 021648          205 -------GHIHVLDSFRGTLLSTYNVKPVSRNSTLE-ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVI  276 (309)
Q Consensus       205 -------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l  276 (309)
                             ..|.+||  +++....   ...+...+.. +.|+ || .+++++.|+.+++| +.+++. ..+..+...+..+
T Consensus       237 ~~~~~~~~~l~~~d--~~~~~~l---~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~  307 (347)
T 2gop_A          237 KKYMSEHNKLYIYD--GKEVMGI---LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGF  307 (347)
T ss_dssp             SSCCCSSCEEEEEC--SSCEEES---STTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEE
T ss_pred             cCCccccceEEEEC--CCceEec---cccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEee
Confidence                   3688888  5543321   1123345554 8899 88 99999999999999 876554 4444557778899


Q ss_pred             EECCCeeEEEEccce---EEEeeecCCCcccc
Q 021648          277 KWTPGSLMFVTGSSE---LSFWIPDLSKLGAY  305 (309)
Q Consensus       277 ~~~p~~~~l~s~~~d---~~~~~~~~~~~~~~  305 (309)
                      +|+|  .++++++.+   .++|..+ ..+.++
T Consensus       308 ~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~l  336 (347)
T 2gop_A          308 DVDE--IVVYLKETATRLRELFTWD-GEEKQL  336 (347)
T ss_dssp             EESS--SEEEEEECSSSCCEEEEES-SSEEEC
T ss_pred             eeeC--cEEEEEcCCCChHHheEeC-CcEEEe
Confidence            9999  555555543   4788876 444433

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.78  E-value=1e-15  Score=130.65  Aligned_cols=259  Identities=12%  Similarity=0.072  Sum_probs=165.2

Q ss_pred             eEecCCCcceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            5 MSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      ..+..+.....++.|+|+|+ +++++..++.|..||..++  .+.+..+...+..+++.+++..+++...   ++.|.+|
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~---~~~i~~~   95 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHG---LRRLERQ   95 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETT---TTEEEEE
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecC---CCeEEEE
Confidence            44556666788999999998 7888889999999999877  5666655566788999999886554432   5689999


Q ss_pred             EccCCceEEEeeec----ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECC
Q 021648           84 SLHDNKYLRYFKGH----HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG  159 (309)
Q Consensus        84 d~~~~~~~~~~~~h----~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (309)
                      |..+++........    ...+..+++.|+|++++|.+.+|+...+.....    .....                  .+
T Consensus        96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~----~~~~~------------------~~  153 (296)
T 3e5z_A           96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG----EMELP------------------GR  153 (296)
T ss_dssp             CSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC----CCCSS------------------SC
T ss_pred             cCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc----cccCC------------------Cc
Confidence            99888754443322    234667899999988887432222100000000    00000                  00


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC-CCeE---eEEeeecCCCCCccceEE
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTL---LSTYNVKPVSRNSTLEAS  235 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~-~~~~---~~~~~~~~~~~~~~~~~~  235 (309)
                      .|..++..    +.+.  .+.......+.++++|||+.+++.+.++.|++||.. ++.+   ...+   ......+..++
T Consensus       154 ~l~~~~~~----g~~~--~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~p~~i~  224 (296)
T 3e5z_A          154 WVFRLAPD----GTLS--APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF---TVEPGKTDGLR  224 (296)
T ss_dssp             EEEEECTT----SCEE--EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE---CCSSSCCCSEE
T ss_pred             EEEEECCC----CCEE--EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe---eCCCCCCCeEE
Confidence            11111110    0000  001112234678999999999777788999999986 5554   2222   12334456799


Q ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEE-CCCeeEEEEccce-EEEeeecCCCcc
Q 021648          236 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW-TPGSLMFVTGSSE-LSFWIPDLSKLG  303 (309)
Q Consensus       236 ~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~-~p~~~~l~s~~~d-~~~~~~~~~~~~  303 (309)
                      ++|+|+.+++.  ++.|.+||.. ++.+..+..+.. +++++| +|+++.|..++.+ +....+.-.+|+
T Consensus       225 ~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~  290 (296)
T 3e5z_A          225 VDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGLE  290 (296)
T ss_dssp             EBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBCC
T ss_pred             ECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEccccccc
Confidence            99999977777  7889999986 777777777776 999999 6888766555544 333344444444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.77  E-value=6.7e-17  Score=154.14  Aligned_cols=250  Identities=12%  Similarity=0.040  Sum_probs=161.5

Q ss_pred             CCCcceEEEEeCCCCCEEE-----EeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCC--------
Q 021648            9 DYNGRISSMDFHKSSSYLV-----TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--------   75 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~-----t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g--------   75 (309)
                      +|+..+.+++|||||++||     +|+.+.+|++||+.+++.+..-.........++|+|+++.+++++...        
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            5666799999999999998     666678999999999886511111111125789999999998886522        


Q ss_pred             --CCceeEEEEccCCc----eEEEeeecccCEEEEEecCCCCeEEEecCCC----cEEEeeCCCceeeeeeeec-CceeE
Q 021648           76 --WDESLRLLSLHDNK----YLRYFKGHHDRVVSLSLCSSKDCFISGSLDR----TVLLWDQRAEKCQGLLRVQ-GRPAA  144 (309)
Q Consensus        76 --~d~~i~~~d~~~~~----~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg----~v~~Wd~~~~~~~~~~~~~-~~~~~  144 (309)
                        ....|++|++.+++    .+.....|...+.++.|+|||++|+.++.++    .|.+||..++......... .....
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~  277 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEV  277 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEE
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEE
Confidence              12349999998876    2333344667889999999999988887666    6777765444333222211 11222


Q ss_pred             EECCCCcEEEEEE----CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC-CCeEeE
Q 021648          145 AYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTLLS  219 (309)
Q Consensus       145 ~~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~-~~~~~~  219 (309)
                      ...+.+ ++..+.    ++.|.+||+...................+..++++ ++.++++...|+..++|... ++....
T Consensus       278 ~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~  355 (695)
T 2bkl_A          278 HAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR  355 (695)
T ss_dssp             EEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE
T ss_pred             EecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE
Confidence            233333 444443    37899999865432111222222112345667787 77888888899988887554 355444


Q ss_pred             EeeecCCCCCccceEEECCCCCEEE----EEcCCCcEEEEECCCCce
Q 021648          220 TYNVKPVSRNSTLEASFSPEGMFVI----SGSGDGSVYAWSVRSGKE  262 (309)
Q Consensus       220 ~~~~~~~~~~~~~~~~~sp~g~~l~----s~s~Dg~i~vwd~~~~~~  262 (309)
                      .+...  ....+..++++|+++.++    +....++|++||+.+++.
T Consensus       356 ~l~~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          356 TVQLP--GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             ECCCS--SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EecCC--CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            43321  134566778999998877    444567999999988763

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.77  E-value=6.4e-16  Score=134.16  Aligned_cols=254  Identities=9%  Similarity=0.107  Sum_probs=175.2

Q ss_pred             CCCcEEEEEcCCCceeeeeecc----c--cceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEE
Q 021648           31 DDESIRLYDVTAATCLKTINSK----K--YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSL  104 (309)
Q Consensus        31 ~D~~v~iWd~~~~~~~~~~~~~----~--~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v  104 (309)
                      .|++|.+||..+++..+.+...    .  .....+++  ++..++.+..  .++.|.++|.++++.+..+. .......+
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~--~~~~v~viD~~t~~~~~~i~-~~~~p~~i   89 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVN--NSHVIFAIDINTFKEVGRIT-GFTSPRYI   89 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEG--GGTEEEEEETTTCCEEEEEE-CCSSEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEc--CCCEEEEEECcccEEEEEcC-CCCCCcEE
Confidence            3899999999999877655221    1  12344555  3455555443  26899999999999888885 34678999


Q ss_pred             EecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC------ce-eEEECCCCcEEEEEE--CCEEEEEECCCCCcCCce
Q 021648          105 SLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG------RP-AAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFD  175 (309)
Q Consensus       105 ~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~  175 (309)
                      +++++++..++...++.|.+||+++.+....+....      .+ ...+ ..+.++.+..  ++.|.++|+.+.+.  ..
T Consensus        90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~--~~  166 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKV--VD  166 (328)
T ss_dssp             EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEE--EE
T ss_pred             EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeE--EE
Confidence            998988666666689999999999988776665433      22 2334 4555555553  78999999875431  11


Q ss_pred             EEEeCCCCCCCeEEEEccCCCEEEEEeCC----------CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEE
Q 021648          176 IFSVGGDISDANVVKFSNDGRLMLLTTME----------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  245 (309)
Q Consensus       176 ~~~~~~~~~~~~~v~~s~dg~~l~~~~~d----------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s  245 (309)
                      .....   .....++++|+|+++++...+          +.|.++|..+++....+....  ......++|+|++++++.
T Consensus       167 ~i~~g---~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv  241 (328)
T 3dsm_A          167 ELTIG---IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYW  241 (328)
T ss_dssp             EEECS---SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEE
T ss_pred             EEEcC---CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEE
Confidence            22222   234567899999988777655          789999999998877665421  124568999999999988


Q ss_pred             EcCCCcEEEEECCCCceEEE-e-ecCCCCCcEEEECC-CeeEEEEc----cce--EEEeeecC
Q 021648          246 GSGDGSVYAWSVRSGKEVAS-W-MSFDTEPPVIKWTP-GSLMFVTG----SSE--LSFWIPDL  299 (309)
Q Consensus       246 ~s~Dg~i~vwd~~~~~~~~~-~-~~~~~~v~~l~~~p-~~~~l~s~----~~d--~~~~~~~~  299 (309)
                      +..  .|.+||..+++.... + ......+..++++| +++++++.    ...  +.+|.++.
T Consensus       242 ~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g  302 (328)
T 3dsm_A          242 INN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQG  302 (328)
T ss_dssp             ESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTC
T ss_pred             Ecc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCC
Confidence            765  899999988775321 1 11134678899999 67777776    444  55555553

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.76  E-value=7e-16  Score=147.48  Aligned_cols=249  Identities=11%  Similarity=0.066  Sum_probs=163.7

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCC-----cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCC-------
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDE-----SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW-------   76 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~-----~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~-------   76 (309)
                      +|+..+..++|||||++||.++.++     +|++||+.+++.+.....+ ..+..++|+||++.+++++..+.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3555788999999999998776544     8999999999877643222 23567899999999988865322       


Q ss_pred             ------CceeEEEEccCCce--EEEeee--cccCEEEEEecCCCCeEEEecC-----CCcEEEeeCCC------ce-eee
Q 021648           77 ------DESLRLLSLHDNKY--LRYFKG--HHDRVVSLSLCSSKDCFISGSL-----DRTVLLWDQRA------EK-CQG  134 (309)
Q Consensus        77 ------d~~i~~~d~~~~~~--~~~~~~--h~~~v~~v~~~~~~~~l~s~s~-----Dg~v~~Wd~~~------~~-~~~  134 (309)
                            ...|++|++.+++.  +..+..  |...+..+.|+||+++|+..+.     +..|.+||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                  23499999988762  233333  5566889999999998887764     67899999875      32 122


Q ss_pred             eeeecC-ceeEEECCCCc-EEEEEEC----CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCc--
Q 021648          135 LLRVQG-RPAAAYDDQGL-VFAVAFG----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH--  206 (309)
Q Consensus       135 ~~~~~~-~~~~~~~~~~~-~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~--  206 (309)
                      .+.... .....+.+++. ++..+..    ..|.+||+...................+..+++++++.++++...++.  
T Consensus       281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (710)
T ss_dssp             EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence            222211 11122334443 3333332    369999986543111122221111124667888888888888888884  


Q ss_pred             EEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE----cCCCcEEEEECCCCc
Q 021648          207 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG----SGDGSVYAWSVRSGK  261 (309)
Q Consensus       207 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~----s~Dg~i~vwd~~~~~  261 (309)
                      |.+||+.+++.+..+..   +...+..++++|+++.++..    ...+++++||+.+++
T Consensus       361 l~~~~~~~g~~~~~l~~---~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          361 LQLHDLATGALLKIFPL---EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTTCCEEEEECC---CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCCCEEEecCC---CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            56678767776665543   24556678899999766633    345799999998876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.74  E-value=1.3e-13  Score=116.91  Aligned_cols=276  Identities=7%  Similarity=0.054  Sum_probs=186.2

Q ss_pred             ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeee-eeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648            7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      +..+...+.++.++++|++.++...++.|.+||.. ++.... +......+..+++.+++...++...   ++.|..||.
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~~~   85 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENA---ANKIGRITK   85 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETT---TTEEEEECT
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCC---CCeEEEECC
Confidence            44566789999999999988887778999999987 543321 1223345778888888775554432   567999987


Q ss_pred             cCCceEEEee--ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeee-ee--cCceeEEECCCCcEEEEEE-CC
Q 021648           86 HDNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RV--QGRPAAAYDDQGLVFAVAF-GG  159 (309)
Q Consensus        86 ~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~-~~  159 (309)
                      . ++. ..+.  .....+.++.+.++++.+++...++.|..||. +++..... ..  ........++++.++.+.. ++
T Consensus        86 ~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  162 (299)
T 2z2n_A           86 K-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNN  162 (299)
T ss_dssp             T-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred             C-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence            6 332 2232  34567899999999988888878899999998 44433211 11  1123455666777666554 57


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      .|..||. ..   .+..+...........++++++|+++++...++.|.+||. ++.... +... .....+..++++|+
T Consensus       163 ~i~~~~~-~g---~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~-~~~~~~~~i~~~~~  235 (299)
T 2z2n_A          163 AIGRITE-SG---DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP-TPNARPHAITAGAG  235 (299)
T ss_dssp             EEEEECT-TC---CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS-STTCCEEEEEECST
T ss_pred             EEEEEcC-CC---cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC-CCCCCceeEEECCC
Confidence            8999987 32   2222222223345678999999998888878899999998 666443 3222 22345678999999


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEe--ecCCCCCcEEEECCCeeEEEEccc-eEEEeeecC
Q 021648          240 GMFVISGSGDGSVYAWSVRSGKEVASW--MSFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPDL  299 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~~~~~~~~~--~~~~~~v~~l~~~p~~~~l~s~~~-d~~~~~~~~  299 (309)
                      |+.+++...++.|.+||. +++ +..+  ..+...+.++++ +++++.++... .+..+.++-
T Consensus       236 g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~  295 (299)
T 2z2n_A          236 IDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIK  295 (299)
T ss_dssp             TCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC-
T ss_pred             CCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCc
Confidence            998887778899999999 454 3333  334456888999 99888777543 354455543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.74  E-value=2.4e-15  Score=127.28  Aligned_cols=218  Identities=10%  Similarity=0.096  Sum_probs=166.5

Q ss_pred             CCCEEEEeeCCCcEEEEEcCCCceeeeeeccc-cceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecc-c
Q 021648           22 SSSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH-D   99 (309)
Q Consensus        22 ~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~-~   99 (309)
                      .+++|++++.|+.|.+||.++|+.+..+..+. ..+..+++.|+++.++ +.    ++.|..||. +++.++.+..+. .
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~----~~~V~~~d~-~G~~~W~~~~~~~~   77 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SY----SKGAKMITR-DGRELWNIAAPAGC   77 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-EC----BSEEEEECT-TSCEEEEEECCTTC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eC----CCCEEEECC-CCCEEEEEcCCCCc
Confidence            46799999999999999999999999988765 4678889999998766 32    668999999 889999988753 5


Q ss_pred             CEEEEEecCCCCeEEEecC-CCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEE
Q 021648          100 RVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFS  178 (309)
Q Consensus       100 ~v~~v~~~~~~~~l~s~s~-Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  178 (309)
                      .+.++.+.++|+.+++.+. ++.+..+|. +++.+..+....                            ...       
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~----------------------------~~~-------  121 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFET----------------------------GIE-------  121 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECC----------------------------SCS-------
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccC----------------------------CCC-------
Confidence            7889999999999999877 777777774 444332221110                            000       


Q ss_pred             eCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648          179 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       179 ~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~  258 (309)
                        .+......+++.++|+++++...++.|..||.. |+.+-++...    ..+..+.+.|+|+.+++++.++.|..+|..
T Consensus       122 --~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          122 --RPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             --SGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             --cccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence              000122345688999999999999999999987 9988877642    234567888999999999999999999999


Q ss_pred             CCceEEEeecCC------CCCcEEEECCCeeEEEEc
Q 021648          259 SGKEVASWMSFD------TEPPVIKWTPGSLMFVTG  288 (309)
Q Consensus       259 ~~~~~~~~~~~~------~~v~~l~~~p~~~~l~s~  288 (309)
                      +++.+.++....      ..+..++..|+++.+++.
T Consensus       195 tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          195 SNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             TCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            999988876432      125678888999888776

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=1.2e-16  Score=141.26  Aligned_cols=243  Identities=10%  Similarity=0.063  Sum_probs=152.6

Q ss_pred             EEEcCCCceeeeeeccccc-----eeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCC
Q 021648           37 LYDVTAATCLKTINSKKYG-----VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD  111 (309)
Q Consensus        37 iWd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~  111 (309)
                      ..|..++..+..+..+...     +..++|+|+++.+++....+.+..+.+||+.+++......++......+.|+||++
T Consensus        14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~   93 (396)
T 3c5m_A           14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER   93 (396)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred             eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence            3377788777666554322     56778999999988876543456788999988876544443333233378999999


Q ss_pred             eEEEecCCCcEEEeeCCCceeeeeeeecCce--e---EE----------------ECCCCcEEEE------EECCEEEEE
Q 021648          112 CFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--A---AA----------------YDDQGLVFAV------AFGGYIRMF  164 (309)
Q Consensus       112 ~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~---~~----------------~~~~~~~~~~------~~~~~i~~~  164 (309)
                      .|+.++.++.+.+||+.+++...........  .   .+                ..+++..++.      ..+..|.+|
T Consensus        94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~  173 (396)
T 3c5m_A           94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV  173 (396)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred             EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence            9999999999999999877654443322110  0   11                1222221111      234578899


Q ss_pred             ECCCCCcCCceEEEeCCCCCCCeEEEEcc-CCCEEEEEeCC------CcEEEEECCCCeEeEEeeecCCCCCccceEEEC
Q 021648          165 DARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  237 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~s  237 (309)
                      |+...+.   ....  .....+..+.|+| +|+.++..+.+      ..|.+||...++......  ......+..++|+
T Consensus       174 d~~~g~~---~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~~s  246 (396)
T 3c5m_A          174 DIETGEL---EVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE--HAEGESCTHEFWI  246 (396)
T ss_dssp             ETTTCCE---EEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC--CCTTEEEEEEEEC
T ss_pred             ECCCCcE---Eeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec--cCCCccccceEEC
Confidence            9865331   1111  1234567889999 88877766543      368888886554332111  1111235568999


Q ss_pred             CCCCEEEEEcCC-----CcEEEEECCCCceEEEeecCCCCCcEEEECC-CeeEEEEcc
Q 021648          238 PEGMFVISGSGD-----GSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGS  289 (309)
Q Consensus       238 p~g~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~s~~  289 (309)
                      |||++|+.++.+     +.|++||+.+++.... ..... .. ++|+| |+++++.++
T Consensus       247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~-~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          247 PDGSAMAYVSYFKGQTDRVIYKANPETLENEEV-MVMPP-CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             TTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE-EECCS-EE-EEEECSSSSEEEEEE
T ss_pred             CCCCEEEEEecCCCCccceEEEEECCCCCeEEe-eeCCC-CC-CCccCCCCceEEEec
Confidence            999988887654     4499999988764332 22222 22 89999 999887643

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.73  E-value=1.9e-15  Score=133.05  Aligned_cols=213  Identities=9%  Similarity=0.053  Sum_probs=139.2

Q ss_pred             ceEEEEeCCCCCE--EEEee-------------CCCcEEEEEcC-CCceeeeeec----cccceeEEEEecCCCEEEEEc
Q 021648           13 RISSMDFHKSSSY--LVTAS-------------DDESIRLYDVT-AATCLKTINS----KKYGVDLVCFTSHPTTVIYSS   72 (309)
Q Consensus        13 ~V~~i~~s~~~~~--l~t~s-------------~D~~v~iWd~~-~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~s   72 (309)
                      .+..++|+|||++  +++++             .|+++++|++. +++....+..    +...+..++|+|+++.++++.
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            3556899999994  55664             69999999997 4665544432    334578899999999887664


Q ss_pred             CCCCCceeEEEEcc-CCceE--EEee--ecccCEEEEEecCCCCeEEEec-CCCcEEEeeCC--CceeeeeeeecCceeE
Q 021648           73 KNGWDESLRLLSLH-DNKYL--RYFK--GHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQR--AEKCQGLLRVQGRPAA  144 (309)
Q Consensus        73 ~~g~d~~i~~~d~~-~~~~~--~~~~--~h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~--~~~~~~~~~~~~~~~~  144 (309)
                      . + ++.|++||+. +++..  ..+.  .|...+..++|+||+++++.++ .++++.+|++.  +++.......     .
T Consensus       164 ~-~-~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~-----~  236 (365)
T 1jof_A          164 L-T-ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS-----F  236 (365)
T ss_dssp             T-T-TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-----E
T ss_pred             C-C-CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce-----E
Confidence            3 2 5789999998 67643  2333  2456799999999999887766 47899999764  3332110000     0


Q ss_pred             EECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCC------CCeEEE-EccCCCEEEEEeCC-C-----cEEEEE
Q 021648          145 AYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDIS------DANVVK-FSNDGRLMLLTTME-G-----HIHVLD  211 (309)
Q Consensus       145 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~------~~~~v~-~s~dg~~l~~~~~d-g-----~v~i~d  211 (309)
                      ...+.+                            ..++..      .+..++ |||||++|+++..+ +     .|.+|+
T Consensus       237 ~~~~~~----------------------------~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~  288 (365)
T 1jof_A          237 PLIPPG----------------------------IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFK  288 (365)
T ss_dssp             ESSCTT----------------------------CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEE
T ss_pred             EcCCCC----------------------------cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEE
Confidence            000000                            000000      256789 99999988765532 2     899999


Q ss_pred             CC-CCeEeEEeeecCCCCCccceEEECC---CCCEEEEEcCC-CcEEEEECCCC
Q 021648          212 SF-RGTLLSTYNVKPVSRNSTLEASFSP---EGMFVISGSGD-GSVYAWSVRSG  260 (309)
Q Consensus       212 ~~-~~~~~~~~~~~~~~~~~~~~~~~sp---~g~~l~s~s~D-g~i~vwd~~~~  260 (309)
                      +. ++++.........+......++|+|   ||++|++++.+ +.|++|++...
T Consensus       289 ~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          289 LRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            85 5665432111111222345689999   89999999875 89999999765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=7.5e-16  Score=147.92  Aligned_cols=273  Identities=8%  Similarity=0.064  Sum_probs=165.7

Q ss_pred             eEecCCCcc-----eEEEEeCCCCCEEEEeeCC---------CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEE
Q 021648            5 MSFRDYNGR-----ISSMDFHKSSSYLVTASDD---------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY   70 (309)
Q Consensus         5 ~~~~~h~~~-----V~~i~~s~~~~~l~t~s~D---------~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   70 (309)
                      ..+.+|...     ...++|||||++|+.++.|         +.+.+||+.++++.+ +..+...+...+|+|+|+.+++
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~  128 (740)
T 4a5s_A           50 VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAY  128 (740)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEE
T ss_pred             EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEE
Confidence            345556543     3447889999999999987         455699999988654 5555667889999999999998


Q ss_pred             EcCCCCCceeEEEEccCCceEEE-eeecccCE-----------------EEEEecCCCCeEEEecCCC------------
Q 021648           71 SSKNGWDESLRLLSLHDNKYLRY-FKGHHDRV-----------------VSLSLCSSKDCFISGSLDR------------  120 (309)
Q Consensus        71 ~s~~g~d~~i~~~d~~~~~~~~~-~~~h~~~v-----------------~~v~~~~~~~~l~s~s~Dg------------  120 (309)
                      ++    |+.|++||+.+++..+. ..++...+                 .++.|+|||+.|+.++.|.            
T Consensus       129 ~~----~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~  204 (740)
T 4a5s_A          129 VW----NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYS  204 (740)
T ss_dssp             EE----TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECC
T ss_pred             EE----CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeec
Confidence            85    67899999988775442 23444333                 3489999999999876432            


Q ss_pred             ------------------------cEEEeeCCC---c---eeeeeeee------cC--ceeEEECCCCcEEEEEE--C--
Q 021648          121 ------------------------TVLLWDQRA---E---KCQGLLRV------QG--RPAAAYDDQGLVFAVAF--G--  158 (309)
Q Consensus       121 ------------------------~v~~Wd~~~---~---~~~~~~~~------~~--~~~~~~~~~~~~~~~~~--~--  158 (309)
                                              ++++||+.+   +   +... +..      ..  .....+++++.+++...  +  
T Consensus       205 ~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~  283 (740)
T 4a5s_A          205 DESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ-ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN  283 (740)
T ss_dssp             STTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE-ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT
T ss_pred             CCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE-ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCC
Confidence                                    477888877   6   2222 111      11  12345667777544332  1  


Q ss_pred             -CEEEEEECCCCC----cC-CceEEEeCCCCCC-----CeEEEEccCCCEEE-EEeC-C--CcEEEEECCCCeEeEEeee
Q 021648          159 -GYIRMFDARKYE----KG-PFDIFSVGGDISD-----ANVVKFSNDGRLML-LTTM-E--GHIHVLDSFRGTLLSTYNV  223 (309)
Q Consensus       159 -~~i~~~d~~~~~----~~-~~~~~~~~~~~~~-----~~~v~~s~dg~~l~-~~~~-d--g~v~i~d~~~~~~~~~~~~  223 (309)
                       ..|++||+...+    .. ...+.. ..+...     .....|||||+.++ ..+. +  .+|++||...+.... +. 
T Consensus       284 ~~~i~~~d~~tg~~~~~~~~~~~l~~-~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT-  360 (740)
T 4a5s_A          284 YSVMDICDYDESSGRWNCLVARQHIE-MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-IT-  360 (740)
T ss_dssp             EEEEEEEEEETTTTEEEECGGGCEEE-ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SC-
T ss_pred             EEEEEEEECCCCccccceeEEEEeee-ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cc-
Confidence             379999987643    11 111111 122222     23578999999877 5553 3  478888987665432 21 


Q ss_pred             cCCCCCccceEEECCCCCEEEEEcCC-----C--cEEEEECCCCceEEEeec----CCCCCcEEEECCCeeEEEEcc
Q 021648          224 KPVSRNSTLEASFSPEGMFVISGSGD-----G--SVYAWSVRSGKEVASWMS----FDTEPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       224 ~~~~~~~~~~~~~sp~g~~l~s~s~D-----g--~i~vwd~~~~~~~~~~~~----~~~~v~~l~~~p~~~~l~s~~  289 (309)
                       .. ...+..+ +++|++.|+-.+..     +  .|+..++..++....+..    ..+....+.|+|+++.++...
T Consensus       361 -~g-~~~v~~~-~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~  434 (740)
T 4a5s_A          361 -KG-TWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRC  434 (740)
T ss_dssp             -CS-SSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred             -cC-CEEEEEE-EEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEe
Confidence             11 1223332 23556655544332     3  455555544332222321    234677899999998665443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=1.9e-14  Score=121.91  Aligned_cols=231  Identities=9%  Similarity=0.152  Sum_probs=158.9

Q ss_pred             ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEee------ecccCEEEEEe-cCCCCeEEEecC-CCcEEEee
Q 021648           55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK------GHHDRVVSLSL-CSSKDCFISGSL-DRTVLLWD  126 (309)
Q Consensus        55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~------~h~~~v~~v~~-~~~~~~l~s~s~-Dg~v~~Wd  126 (309)
                      .+..+++.+++..+++...   ++.|.+||.. ++.+..+.      +|...+.++++ .++++.+++... ++.|++||
T Consensus        31 ~p~~v~~~~~g~l~v~~~~---~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           31 EPSGVAVNAQNDIIVADTN---NHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             CEEEEEECTTCCEEEEEGG---GTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             CCceEEECCCCCEEEEECC---CCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            4677888888875554432   6789999987 55555553      34567899999 467776666643 89999999


Q ss_pred             CCCceeeeeeeec---CceeEEECCCCcEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe
Q 021648          127 QRAEKCQGLLRVQ---GRPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT  202 (309)
Q Consensus       127 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~  202 (309)
                       .+++....+...   ......+++++.++.+. .++.|.+||....   ....+...........++++|+|+++++..
T Consensus       107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN---VLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC---EEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC---EEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence             455554444221   12345667777766655 3689999985421   112222223344578999999999988888


Q ss_pred             CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC-cEEEEECCCCceEEEeecCCC--CCcEEEEC
Q 021648          203 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVYAWSVRSGKEVASWMSFDT--EPPVIKWT  279 (309)
Q Consensus       203 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg-~i~vwd~~~~~~~~~~~~~~~--~v~~l~~~  279 (309)
                      .++.|++||. .+..+..+.... ....+..++++|+|+.+++...++ .|++||. +++.+..+..+..  .+..++++
T Consensus       183 ~~~~i~~~~~-~g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~  259 (286)
T 1q7f_A          183 RAHCVKVFNY-EGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM  259 (286)
T ss_dssp             GGTEEEEEET-TCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred             CCCEEEEEcC-CCCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC
Confidence            8999999997 455555543221 124567899999999999988886 9999996 5677777765543  35689999


Q ss_pred             CCeeEEEEccce--EEEeee
Q 021648          280 PGSLMFVTGSSE--LSFWIP  297 (309)
Q Consensus       280 p~~~~l~s~~~d--~~~~~~  297 (309)
                      |+++++++. .+  +++|.+
T Consensus       260 ~~g~l~vs~-~~~~v~v~~~  278 (286)
T 1q7f_A          260 DDGSVVLAS-KDYRLYIYRY  278 (286)
T ss_dssp             TTTEEEEEE-TTTEEEEEEC
T ss_pred             CCCcEEEEC-CCCeEEEEEc
Confidence            999988884 45  566644

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.71  E-value=1.1e-13  Score=119.82  Aligned_cols=243  Identities=9%  Similarity=0.076  Sum_probs=161.6

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC-CCCceeEEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-GWDESLRLL   83 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-g~d~~i~~~   83 (309)
                      ..+.++...+.+++|+|+|++++++..++.|.+||..+++.......+...+..+++++++..+++...+ ...+.|.+|
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~  117 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA  117 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred             EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEE
Confidence            4556677778999999999988899999999999998887665443445568889999998766554321 001579999


Q ss_pred             EccCCceEEEee--ecccCEEEEEecCCCCeEEEecC------CCcEEEeeCCCceeeeeee-ecCceeEEECCCCcEEE
Q 021648           84 SLHDNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFA  154 (309)
Q Consensus        84 d~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~s~------Dg~v~~Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  154 (309)
                      |.++++....+.  .+...+.++.+.|+++.+++...      .+.|..+|..+++...... ........+++++..+.
T Consensus       118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~  197 (333)
T 2dg1_A          118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLW  197 (333)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEE
T ss_pred             eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEE
Confidence            998877543333  24467999999999988777654      3566666765544332221 11223456777775443


Q ss_pred             EE--ECCEEEEEECCCCCcCCce-----E-EEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC
Q 021648          155 VA--FGGYIRMFDARKYEKGPFD-----I-FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  226 (309)
Q Consensus       155 ~~--~~~~i~~~d~~~~~~~~~~-----~-~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  226 (309)
                      .+  .++.|.+||+.... ..+.     . ....+. .....++++++|+++++...++.|.+||. +++.+..+.....
T Consensus       198 v~~~~~~~i~~~d~~~~g-~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~  274 (333)
T 2dg1_A          198 VTETTANRLHRIALEDDG-VTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR  274 (333)
T ss_dssp             EEEGGGTEEEEEEECTTS-SSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred             EEeCCCCeEEEEEecCCC-cCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC
Confidence            33  36899999985311 1111     1 111111 24567899999999888888899999998 5666666543211


Q ss_pred             ---CCCccceEEECCCCCEEEEEcCCC
Q 021648          227 ---SRNSTLEASFSPEGMFVISGSGDG  250 (309)
Q Consensus       227 ---~~~~~~~~~~sp~g~~l~s~s~Dg  250 (309)
                         +...+..++|+||++.|+.++.++
T Consensus       275 ~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          275 DEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             GGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             ccccccCcceEEECCCCCEEEEEeCcc
Confidence               111467899999988777665553

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.69  E-value=2.8e-14  Score=119.58  Aligned_cols=237  Identities=9%  Similarity=0.013  Sum_probs=158.4

Q ss_pred             ceEEEEeCCCCCEEE-EeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648           13 RISSMDFHKSSSYLV-TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL   91 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~-t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~   91 (309)
                      ...+++++++|++++ +.+.++.|.+||..++........+...+..+++.+++. ++++..   ++.|.+||...+...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~---~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF---NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET---TTEEEEECTTCSCCE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC---CCEEEEEeCCCceEe
Confidence            677899999999888 657889999999765543322222223467788988887 444332   568999998765433


Q ss_pred             EEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCc
Q 021648           92 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEK  171 (309)
Q Consensus        92 ~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  171 (309)
                      .........+.++++.++++.+++...++.|.+||..+......                                    
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~------------------------------------  144 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL------------------------------------  144 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC------------------------------------
T ss_pred             eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee------------------------------------
Confidence            22223346789999999998888877788898887433211000                                    


Q ss_pred             CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCc
Q 021648          172 GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS  251 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~  251 (309)
                             ..........++++|+|+++++...++.|.+||...........   .....+..++++|+|+.+++...++.
T Consensus       145 -------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~d~~g~l~v~~~~~~~  214 (270)
T 1rwi_B          145 -------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF---TDITAPWGIAVDEAGTVYVTEHNTNQ  214 (270)
T ss_dssp             -------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC---SSCCSEEEEEECTTCCEEEEETTTSC
T ss_pred             -------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc---cCCCCceEEEECCCCCEEEEECCCCc
Confidence                   00011234568899999988888888999999987655433211   11245668999999988888888999


Q ss_pred             EEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          252 VYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       252 i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      |++||............+-..+..++++|+++++++...+.++...++
T Consensus       215 v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          215 VVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             EEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             EEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence            999999765433322223346788999999998888777655554443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.69  E-value=1.7e-13  Score=127.04  Aligned_cols=259  Identities=15%  Similarity=0.147  Sum_probs=176.9

Q ss_pred             CCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc--CCceEEEeeec
Q 021648           20 HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH--DNKYLRYFKGH   97 (309)
Q Consensus        20 s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~--~~~~~~~~~~h   97 (309)
                      +|.+.++++...|++|.++|..+++.+.++.... .+..+.|+|+++++++++.   |+.|.+||+.  +++.+..+...
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~---dg~V~viD~~~~t~~~v~~i~~G  239 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGR---DGKVNMIDLWMKEPTTVAEIKIG  239 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCCEEEEEECC
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcC---CCeEEEEECCCCCCcEeEEEecC
Confidence            3555678888899999999999999998887544 3557899999999887753   7799999995  77777777643


Q ss_pred             ccCEEEEEec----CCCCeEEEec-CCCcEEEeeCCCceeeeeeeecC------------c-eeEEECCCCc--EEEEEE
Q 021648           98 HDRVVSLSLC----SSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQG------------R-PAAAYDDQGL--VFAVAF  157 (309)
Q Consensus        98 ~~~v~~v~~~----~~~~~l~s~s-~Dg~v~~Wd~~~~~~~~~~~~~~------------~-~~~~~~~~~~--~~~~~~  157 (309)
                      . ....++|+    |||++++.++ .++++.++|..+.+.+..+.+..            . .....++.+.  ++....
T Consensus       240 ~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          240 S-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             S-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             C-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence            3 36789999    6999877665 56999999998887776654321            1 1223333333  333334


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe-CCCcEEEEECCCCeEeEEeee-cCC-CCCccceE
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNV-KPV-SRNSTLEA  234 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~~~~~~~~~-~~~-~~~~~~~~  234 (309)
                      .|.|.++|....+.  +.+..+.. ......+.|+|+|++++++. .+++|.++|..+++++..... ... |.+.-.. 
T Consensus       319 ~g~v~~vd~~~~~~--~~v~~i~~-~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-  394 (567)
T 1qks_A          319 TGKILLVDYTDLNN--LKTTEISA-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-  394 (567)
T ss_dssp             TTEEEEEETTCSSE--EEEEEEEC-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-
T ss_pred             CCeEEEEecCCCcc--ceeeeeec-cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-
Confidence            58999999765321  11222211 12245678999999876654 678999999999998877654 211 1111111 


Q ss_pred             EECCCCCEE-EEEc-CCCcEEEEECCC-------CceEEEeecCCCCCcEEEECCCeeEEEE
Q 021648          235 SFSPEGMFV-ISGS-GDGSVYAWSVRS-------GKEVASWMSFDTEPPVIKWTPGSLMFVT  287 (309)
Q Consensus       235 ~~sp~g~~l-~s~s-~Dg~i~vwd~~~-------~~~~~~~~~~~~~v~~l~~~p~~~~l~s  287 (309)
                      -++|++..+ ++.. .+++|.++|..+       .+.+.++........-++.+|+++.+..
T Consensus       395 ~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v  456 (567)
T 1qks_A          395 FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV  456 (567)
T ss_dssp             EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred             eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEE
Confidence            268885544 4543 468999999988       6677777665444455889999876544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=9.9e-15  Score=138.12  Aligned_cols=247  Identities=9%  Similarity=0.028  Sum_probs=156.0

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCC----------CcEEEEEcCC------Cceeeeee-ccccceeEEEEecCCCEEEEEc
Q 021648           10 YNGRISSMDFHKSSSYLVTASDD----------ESIRLYDVTA------ATCLKTIN-SKKYGVDLVCFTSHPTTVIYSS   72 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D----------~~v~iWd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s   72 (309)
                      |...+.+++|+|||++|+.++.|          .+|.+||+.+      ++.. .+. .+...+..++|+|+++.+++++
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~  206 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLA  206 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEE
Confidence            67789999999999999999987          6899999987      5544 444 4445677789999999998776


Q ss_pred             CCC----C-CceeEEEEcc-CC---ceEEEeeecccCEEEEEecCCCCeEEEecCCC--cEEEeeCCCceeeeeeeecCc
Q 021648           73 KNG----W-DESLRLLSLH-DN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR--TVLLWDQRAEKCQGLLRVQGR  141 (309)
Q Consensus        73 ~~g----~-d~~i~~~d~~-~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg--~v~~Wd~~~~~~~~~~~~~~~  141 (309)
                      ...    | ..+|.+||+. ++   +......+|...+..+.|+|||+++++++.|+  .|..||..+++..........
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  286 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE  286 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc
Confidence            432    1 2589999998 56   44555556678999999999999888888888  555566545543322111000


Q ss_pred             eeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEE--ECCCCeEeE
Q 021648          142 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL--DSFRGTLLS  219 (309)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~--d~~~~~~~~  219 (309)
                      .                           ..+.        -...+..++|+|++++++++.. +.++||  |...+. +.
T Consensus       287 ~---------------------------~~p~--------w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~  329 (662)
T 3azo_A          287 F---------------------------AGPL--------WTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LV  329 (662)
T ss_dssp             S---------------------------SCCC--------CSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EE
T ss_pred             c---------------------------cCcc--------ccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EE
Confidence            0                           0000        0012345889999999999988 999998  655555 34


Q ss_pred             EeeecCCCCCccceE-EECCCCCEEEEEcCCC--cEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc--eEEE
Q 021648          220 TYNVKPVSRNSTLEA-SFSPEGMFVISGSGDG--SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSF  294 (309)
Q Consensus       220 ~~~~~~~~~~~~~~~-~~sp~g~~l~s~s~Dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~--d~~~  294 (309)
                      .+..   +...+..+ +++++.-.+++++.+.  .|++||+.+++.......+...+....+.+..........  .+..
T Consensus       330 ~l~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~  406 (662)
T 3azo_A          330 DAAG---PWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHA  406 (662)
T ss_dssp             ECCS---SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEE
T ss_pred             EecC---CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEE
Confidence            4332   22334434 3433333444555554  4666677677644333344444444455555555554432  3444


Q ss_pred             eee
Q 021648          295 WIP  297 (309)
Q Consensus       295 ~~~  297 (309)
                      |..
T Consensus       407 ~~~  409 (662)
T 3azo_A          407 HIY  409 (662)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.68  E-value=6.9e-14  Score=122.69  Aligned_cols=257  Identities=14%  Similarity=0.135  Sum_probs=173.2

Q ss_pred             EEEeCCCCCEEEEee----------CCCcEEEEEcCCCceeeeeeccc-------cceeEEEEecCCCEEEEEcCCCCCc
Q 021648           16 SMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSKK-------YGVDLVCFTSHPTTVIYSSKNGWDE   78 (309)
Q Consensus        16 ~i~~s~~~~~l~t~s----------~D~~v~iWd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~s~~g~d~   78 (309)
                      .+.++|||+++..+.          .+++|.+||..+++.+.++....       .....++|+|++++++.+.. ..++
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~-~~~~  160 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-SPAP  160 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC-SSSC
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEc-CCCC
Confidence            399999999886665          36789999999999988875421       13456899999998887643 2367


Q ss_pred             eeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCC-ceeeeeee----ecCce---eEEE-CCC
Q 021648           79 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLLR----VQGRP---AAAY-DDQ  149 (309)
Q Consensus        79 ~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~-~~~~~~~~----~~~~~---~~~~-~~~  149 (309)
                      .|.++|+++++.+.++.--.  . ...+....+.+++.+.||++.+.++.+ ++......    .....   ...+ .++
T Consensus       161 ~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~d  237 (386)
T 3sjl_D          161 AVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA  237 (386)
T ss_dssp             EEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred             eEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCC
Confidence            89999999999888774321  1 112222455777888899998888876 44321110    00010   1122 356


Q ss_pred             CcEEEEEECCEEEEEECCCCCcCCceEEEe--------CCCCCCCeEEEEccCCCEEEEEeC----------CCcEEEEE
Q 021648          150 GLVFAVAFGGYIRMFDARKYEKGPFDIFSV--------GGDISDANVVKFSNDGRLMLLTTM----------EGHIHVLD  211 (309)
Q Consensus       150 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~v~~s~dg~~l~~~~~----------dg~v~i~d  211 (309)
                      +.++..+.++.+.+.|..........-..+        +-.......++++|+++.+.....          ..+|.++|
T Consensus       238 G~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD  317 (386)
T 3sjl_D          238 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  317 (386)
T ss_dssp             TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence            666667778999999986432111111110        001123345788998877665432          25799999


Q ss_pred             CCCCeEeEEeeecCCCCCccceEEECCCCC-EEEEE-cCCCcEEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648          212 SFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG  281 (309)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~  281 (309)
                      +.+++.+.++...    ..++.++|+||++ +|++. ..++.|.|+|..+++.++++.. .+..+.+.+++|
T Consensus       318 ~~t~kv~~~i~vg----~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~-~~~p~~l~~s~d  384 (386)
T 3sjl_D          318 AKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ-LGHGPQVITTAD  384 (386)
T ss_dssp             TTTCCEEEEEEEE----EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC-CCSSCCEEEECC
T ss_pred             CCCCeEEEEEECC----CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC-CCCCceeEECCc
Confidence            9999999887653    3567899999997 66664 6689999999999999888754 345677888777

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=2.2e-14  Score=124.46  Aligned_cols=206  Identities=9%  Similarity=0.094  Sum_probs=145.1

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc-eeeeee---------ccccceeEEEEec-CCCEEEEEcCCCCCc
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CLKTIN---------SKKYGVDLVCFTS-HPTTVIYSSKNGWDE   78 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~~~~~s~~g~d~   78 (309)
                      +-.....|+++|+|+++++...++.|++||..... .+..+.         .+-.....+++.+ ++..+++.+  ..++
T Consensus        89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~--~~~~  166 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG--YCNS  166 (329)
T ss_dssp             TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC--SSCC
T ss_pred             ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC--CCCC
Confidence            33567899999999999999999999999986432 455542         2223467899998 555444432  1267


Q ss_pred             eeEEEEccCCceEEEeee----------cccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEEC
Q 021648           79 SLRLLSLHDNKYLRYFKG----------HHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD  147 (309)
Q Consensus        79 ~i~~~d~~~~~~~~~~~~----------h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~  147 (309)
                      .|++|| .+++.+..+..          +.....++++.|+ ++.+++...++.|++||..+++....+....       
T Consensus       167 ~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~-------  238 (329)
T 3fvz_A          167 RIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS-------  238 (329)
T ss_dssp             EEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT-------
T ss_pred             eEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc-------
Confidence            999999 56666666643          3345899999998 7788888889999999987666544332111       


Q ss_pred             CCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc------CCCEEEEEeCCCcEEEEECCCCeEeEEe
Q 021648          148 DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN------DGRLMLLTTMEGHIHVLDSFRGTLLSTY  221 (309)
Q Consensus       148 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~------dg~~l~~~~~dg~v~i~d~~~~~~~~~~  221 (309)
                                                        ....+..++++|      +|+.+++...+.+|++||..+++.+..+
T Consensus       239 ----------------------------------~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~  284 (329)
T 3fvz_A          239 ----------------------------------FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF  284 (329)
T ss_dssp             ----------------------------------TTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred             ----------------------------------cCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence                                              001223444555      4444444455669999999999988876


Q ss_pred             eecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          222 NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       222 ~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      .....+...+..++++|+|+.+++...++.|++|++..
T Consensus       285 ~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          285 KPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             cCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            43233445677899999998888899999999999854

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.68  E-value=6.9e-13  Score=117.00  Aligned_cols=277  Identities=7%  Similarity=-0.087  Sum_probs=177.6

Q ss_pred             EEeCCCCCEEEEeeC--CC---cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC-------CCCceeEEEE
Q 021648           17 MDFHKSSSYLVTASD--DE---SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLS   84 (309)
Q Consensus        17 i~~s~~~~~l~t~s~--D~---~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------g~d~~i~~~d   84 (309)
                      +...|+++++.....  ..   +|.++|..+++.+.++.....+  .++++|+++.++.+...       ..++.|.++|
T Consensus        26 ~~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD  103 (373)
T 2mad_H           26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             ccCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence            344578877655543  22   8899999999988888765443  88999999998887521       1257899999


Q ss_pred             ccCCceEEEeeec-------ccCEEEEEecCCCCeEEEecC--CCcEEEeeCCCceeeee-eeecCceeEEECCCCcEEE
Q 021648           85 LHDNKYLRYFKGH-------HDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGL-LRVQGRPAAAYDDQGLVFA  154 (309)
Q Consensus        85 ~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~s~--Dg~v~~Wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  154 (309)
                      ..+.+.+..+.--       ......+.++|||++|+.++.  +.+|.++| ++++.... +...............+++
T Consensus       104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~  182 (373)
T 2mad_H          104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYL  182 (373)
T ss_pred             CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEE
Confidence            9988776655321       123458899999999888764  57899999 99887766 6554332222222334555


Q ss_pred             EEECCEEEEEECCCCCcCCceEEEe---CCCCCCC-eEEEEccCCCEEEEEeCCCcEEEEECCCCe--EeEEeeecCC--
Q 021648          155 VAFGGYIRMFDARKYEKGPFDIFSV---GGDISDA-NVVKFSNDGRLMLLTTMEGHIHVLDSFRGT--LLSTYNVKPV--  226 (309)
Q Consensus       155 ~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~-~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~--  226 (309)
                      ...|+.+..+|. ..+.  ......   .....++ ....+++++..++..+.++++.++|...+.  .+..+.....  
T Consensus       183 ~~~dg~~~~vd~-~g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~  259 (373)
T 2mad_H          183 LCAQGGLAKTDH-AGGA--AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGR  259 (373)
T ss_pred             EcCCCCEEEEEC-CCcE--EEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcc
Confidence            566888888887 4321  101000   0000111 123466666555555578899999986543  2233321100  


Q ss_pred             -----CCCccceEEECCCCCEEEEEcC----------CCcEEEEECCCCceEEEeecCCCCCcEEEECCCee-EEEEcc-
Q 021648          227 -----SRNSTLEASFSPEGMFVISGSG----------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGS-  289 (309)
Q Consensus       227 -----~~~~~~~~~~sp~g~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~~-  289 (309)
                           .......++++||++.++.+..          ++.|.++|+.+++.+.++. .......++|+||++ ++.++. 
T Consensus       260 ~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~  338 (373)
T 2mad_H          260 KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSA  338 (373)
T ss_pred             cccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcC
Confidence                 0111223789999988877653          3579999999999888884 344689999999998 666655 


Q ss_pred             ceEEEeeecCC
Q 021648          290 SELSFWIPDLS  300 (309)
Q Consensus       290 ~d~~~~~~~~~  300 (309)
                      .+..+.++|..
T Consensus       339 ~~~~V~ViD~~  349 (373)
T 2mad_H          339 GTEVLHIYDAG  349 (373)
T ss_pred             CCCeEEEEECC
Confidence            34555555443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.68  E-value=8.9e-13  Score=116.30  Aligned_cols=241  Identities=12%  Similarity=0.046  Sum_probs=161.1

Q ss_pred             EEEeCCCCCEEEEee----------CCCcEEEEEcCCCceeeeeecc-------ccceeEEEEecCCCEEEEEcCCCCCc
Q 021648           16 SMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSK-------KYGVDLVCFTSHPTTVIYSSKNGWDE   78 (309)
Q Consensus        16 ~i~~s~~~~~l~t~s----------~D~~v~iWd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~s~~g~d~   78 (309)
                      .+.|+|||+++..+.          .|++|.+||..+++.+.++...       ......++++|++++++.+... .++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~-~~~  148 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA-AGP  148 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC-CCC
Confidence            899999999987775          3788999999998888776532       1123468999999999887532 257


Q ss_pred             eeEEEEccCCceEEE-eeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeeeeee-----ecCce---eEEEC-
Q 021648           79 SLRLLSLHDNKYLRY-FKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLR-----VQGRP---AAAYD-  147 (309)
Q Consensus        79 ~i~~~d~~~~~~~~~-~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~-----~~~~~---~~~~~-  147 (309)
                      .|.++| ++++.+.. +.- ..   ++.+.|++ +.+++.+.||++.++|. +++......     ....+   ...+. 
T Consensus       149 ~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~  222 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             eEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence            899999 99987766 432 11   24455654 46677888999999999 776553221     11111   01112 


Q ss_pred             CCCcEEEEEECCEEEEEECCCCCcCCceEEEeCC--------CCCCCeEEEEccCCCEEEEEeC----------CCcEEE
Q 021648          148 DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDGRLMLLTTM----------EGHIHV  209 (309)
Q Consensus       148 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~v~~s~dg~~l~~~~~----------dg~v~i  209 (309)
                      ..+.++....++.+.+.|+..........+.+..        .......+.++||++.+.....          .+.|.+
T Consensus       223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V  302 (373)
T 2mad_H          223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence            2334444456778888887542211111111100        1122344789999887666543          357999


Q ss_pred             EECCCCeEeEEeeecCCCCCccceEEECCCCC-EEEEEc-CCCcEEEEECCCCceEEEee
Q 021648          210 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS-GDGSVYAWSVRSGKEVASWM  267 (309)
Q Consensus       210 ~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~s~s-~Dg~i~vwd~~~~~~~~~~~  267 (309)
                      +|..+++.+.++...    .....++|+|||+ .++++. .++.|.|+|+.+++.++++.
T Consensus       303 ID~~t~~vv~~i~~g----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~  358 (373)
T 2mad_H          303 VTGLVGQTSSQISLG----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             EECCCCEEEEEEECC----CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeec
Confidence            999999998877532    2456899999999 788877 58999999999999888743

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.67  E-value=3.4e-14  Score=123.51  Aligned_cols=238  Identities=8%  Similarity=0.066  Sum_probs=153.6

Q ss_pred             cceEEEEeCCCCCEEEEeeCC---Cc--EEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC------------
Q 021648           12 GRISSMDFHKSSSYLVTASDD---ES--IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN------------   74 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D---~~--v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~------------   74 (309)
                      ..+..++|+|||++||.++.+   +.  |.+||+.+++..+....+.  +..++|+|+++.+++++..            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            457789999999999988765   33  7777888887666555443  8889999999998887631            


Q ss_pred             ------------CCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCC-------cEEEeeCCCceeeee
Q 021648           75 ------------GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-------TVLLWDQRAEKCQGL  135 (309)
Q Consensus        75 ------------g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg-------~v~~Wd~~~~~~~~~  135 (309)
                                  .....|.+||+.+++.+..+.. . .+..+.|+||+ .+++++.+.       ...+|.+.+++....
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l  213 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKM  213 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEE
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEe
Confidence                        0135799999998876455555 4 78899999999 877776542       345554434443322


Q ss_pred             eeecCceeEEECCCCcEE-EEEEC--------CEEEEEECCCCCcCCceEEEeCCCCCCCeE-EEEccCCCEEEEEeCCC
Q 021648          136 LRVQGRPAAAYDDQGLVF-AVAFG--------GYIRMFDARKYEKGPFDIFSVGGDISDANV-VKFSNDGRLMLLTTMEG  205 (309)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~-~~~~~--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-v~~s~dg~~l~~~~~dg  205 (309)
                      ...  ......++++..+ ..+.+        ..|.+||  ..   ... .....+...+.. +.++ || ++++++.++
T Consensus       214 ~~~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---~~~-~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~  283 (347)
T 2gop_A          214 FEK--VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK---EVM-GILDEVDRGVGQAKIKD-GK-VYFTLFEEG  283 (347)
T ss_dssp             EEE--ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS---CEE-ESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred             ccC--cceeeECCCCCEEEEEEccccCCccccceEEEEC--CC---ceE-eccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence            221  1112225566544 34432        3677777  21   111 111222334554 7899 88 888899999


Q ss_pred             cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcE-EEEECCCCceEEEeecCCCCC
Q 021648          206 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV-YAWSVRSGKEVASWMSFDTEP  273 (309)
Q Consensus       206 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i-~vwd~~~~~~~~~~~~~~~~v  273 (309)
                      .+++| ..+++......    ....+..++|+|  +.+++++.++.. .+|.+. ++ ...+..|+..+
T Consensus       284 ~~~l~-~~~g~~~~~~~----~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~~  343 (347)
T 2gop_A          284 SVNLY-IWDGEIKPIAK----GRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDPI  343 (347)
T ss_dssp             EEEEE-EESSSEEEEEC----SSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTSTT
T ss_pred             cEEEE-EcCCceEEEec----CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHhH
Confidence            99999 77555433221    245677889999  777888777765 777776 44 45566666543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.66  E-value=5.6e-12  Score=106.81  Aligned_cols=274  Identities=8%  Similarity=0.026  Sum_probs=183.5

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceee-eeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   87 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~   87 (309)
                      .....+.++.++++|++.++...++.|.+||.. ++... .+......+..+++.+++...++...   ++.|..+|.. 
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~v~~~d~~-   91 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENG---ANKIGKLSKK-   91 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT---TTEEEEECTT-
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecC---CCeEEEECCC-
Confidence            345678899999999998888888999999987 55433 12222245677888887765544321   5679999987 


Q ss_pred             CceEE-EeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeee-eee--cCceeEEECCCCcEEEEEE-CCEEE
Q 021648           88 NKYLR-YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL-LRV--QGRPAAAYDDQGLVFAVAF-GGYIR  162 (309)
Q Consensus        88 ~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~i~  162 (309)
                      ++... .+......+.++++.++++..++...++.|..+|.. ++.... +..  ........++++.++.+.. ++.|.
T Consensus        92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  170 (300)
T 2qc5_A           92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG  170 (300)
T ss_dssp             SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence            55432 222234678999999999988888778899999986 443321 111  1122345666676665554 57899


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  242 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  242 (309)
                      .+|.. .   .+..+...........++++++|+++++....+.|.+||. ++..... ... .....+..++++|+|+.
T Consensus       171 ~~~~~-g---~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~-~~~~~~~~i~~d~~g~l  243 (300)
T 2qc5_A          171 RITNT-G---KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIP-TPNARPHAITAGKNSEI  243 (300)
T ss_dssp             EECTT-C---CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECS-STTCCEEEEEECSTTCE
T ss_pred             EECCC-C---cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECC-CCCCCceEEEECCCCCE
Confidence            99862 1   2222333233345788999999998888877889999998 5554432 211 22345678999999998


Q ss_pred             EEEEcCCCcEEEEECCCCceEE-EeecCCCCCcEEEECCCeeEEEEccceEEEeeec
Q 021648          243 VISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD  298 (309)
Q Consensus       243 l~s~s~Dg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~  298 (309)
                      +++...++.|..||. +++... .+......+.++++.|++++.++.. . .++..+
T Consensus       244 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~  297 (300)
T 2qc5_A          244 WFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLN  297 (300)
T ss_dssp             EEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred             EEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence            888777899999998 444322 2233345688999999998877765 3 554433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=1.8e-13  Score=130.76  Aligned_cols=273  Identities=8%  Similarity=0.018  Sum_probs=172.0

Q ss_pred             CCCCEEEEeeCCC---cEEEEEc--CCCceeeee------eccccceeEEEEecCCCEEEEEcCCCCC--ceeEEEEccC
Q 021648           21 KSSSYLVTASDDE---SIRLYDV--TAATCLKTI------NSKKYGVDLVCFTSHPTTVIYSSKNGWD--ESLRLLSLHD   87 (309)
Q Consensus        21 ~~~~~l~t~s~D~---~v~iWd~--~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~s~~g~d--~~i~~~d~~~   87 (309)
                      |+|++++-...++   .-.||-.  .+++....+      .++...+...+|+|+++.+++++..+-+  .+|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            8888876554332   1245543  344332221      1233457789999999999877643222  3899999999


Q ss_pred             CceEEEeeecccCEEEEEecCCCCeEEEecCCCc----------------EEEeeCCCceeeeee--eecC----ceeEE
Q 021648           88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT----------------VLLWDQRAEKCQGLL--RVQG----RPAAA  145 (309)
Q Consensus        88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~----------------v~~Wd~~~~~~~~~~--~~~~----~~~~~  145 (309)
                      ++.+.....+ ..+..++|+||++.|+.++.|+.                |++|++.+++....+  ....    .....
T Consensus       161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~  239 (710)
T 2xdw_A          161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE  239 (710)
T ss_dssp             TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred             CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence            9876543322 23667999999999999888876                999999876532111  2111    22456


Q ss_pred             ECCCCcEEEEE-E-----CCEEEEEECCC------CCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC----CcEEE
Q 021648          146 YDDQGLVFAVA-F-----GGYIRMFDARK------YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME----GHIHV  209 (309)
Q Consensus       146 ~~~~~~~~~~~-~-----~~~i~~~d~~~------~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d----g~v~i  209 (309)
                      +++++..++.. .     +..|.+||+..      ... ...  .+..+...+.. .++|+|+.|+..+..    +.|.+
T Consensus       240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~--~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~  315 (710)
T 2xdw_A          240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWV--KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLIN  315 (710)
T ss_dssp             ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCE--EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEE
T ss_pred             EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-ceE--EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEE
Confidence            77887655544 3     46899999864      211 122  22223333333 589999888776653    36999


Q ss_pred             EECCCCeE--eEEeeecCCCCCccceEEECCCCCEEEEEcCCC--cEEEEECCCCceEEEeecCCCCCcEEEECCCeeE-
Q 021648          210 LDSFRGTL--LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLM-  284 (309)
Q Consensus       210 ~d~~~~~~--~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~-  284 (309)
                      ||+.++..  ...+..+ .....+..++|++++..+++...|+  .|++||+.+++.+..+..+.+.+..++++|++.. 
T Consensus       316 ~d~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l  394 (710)
T 2xdw_A          316 IDFTDPEESKWKVLVPE-HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEI  394 (710)
T ss_dssp             EETTSCCGGGCEEEECC-CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEE
T ss_pred             EeCCCCCcccceeccCC-CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEE
Confidence            99877641  2222211 1112455688988888999999898  4667787778777777767777888999998854 


Q ss_pred             EEEccc---eEEEeeecC
Q 021648          285 FVTGSS---ELSFWIPDL  299 (309)
Q Consensus       285 l~s~~~---d~~~~~~~~  299 (309)
                      +++.++   ...+|.+++
T Consensus       395 ~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          395 FYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             EEEEECSSCCCEEEEEET
T ss_pred             EEEEeCCCCCCEEEEEEC
Confidence            444333   245555544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.63  E-value=5e-13  Score=114.38  Aligned_cols=239  Identities=8%  Similarity=0.067  Sum_probs=153.8

Q ss_pred             CcceEEEEeCCCCCEEEE-------eeCCCcEEEEEcCCCceeeeee----ccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648           11 NGRISSMDFHKSSSYLVT-------ASDDESIRLYDVTAATCLKTIN----SKKYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t-------~s~D~~v~iWd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      -....+++|+++|+++++       +..++.|.+||..+++......    ++...+..+++.+++..++++..   ...
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~---~~~   93 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---RLG   93 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---TTE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC---CCC
Confidence            345679999999998888       6788999999988776543221    13345778888888334444332   336


Q ss_pred             eEEEEccCCceEEE-eee----cccCEEEEEecCCCCeEEEecCC---------------CcEEEeeCCCceeeeeeeec
Q 021648           80 LRLLSLHDNKYLRY-FKG----HHDRVVSLSLCSSKDCFISGSLD---------------RTVLLWDQRAEKCQGLLRVQ  139 (309)
Q Consensus        80 i~~~d~~~~~~~~~-~~~----h~~~v~~v~~~~~~~~l~s~s~D---------------g~v~~Wd~~~~~~~~~~~~~  139 (309)
                      |.+||.+ ++.... ...    +...+.++.+.++++..++...+               +.|..||.. ++...     
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-----  166 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-----  166 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-----
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-----
Confidence            8899988 664433 221    12457899999999877776554               233333322 11100     


Q ss_pred             CceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEc----cCCCEE-EEEeCCCcEEEEECC-
Q 021648          140 GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS----NDGRLM-LLTTMEGHIHVLDSF-  213 (309)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s----~dg~~l-~~~~~dg~v~i~d~~-  213 (309)
                                                          ...   .......++++    |+|+.+ ++...++.|.+||.. 
T Consensus       167 ------------------------------------~~~---~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~  207 (314)
T 1pjx_A          167 ------------------------------------VDT---AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG  207 (314)
T ss_dssp             ------------------------------------EEE---EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE
T ss_pred             ------------------------------------ecc---CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC
Confidence                                                000   00123567888    999654 555678899999975 


Q ss_pred             CCeEeE--EeeecCCCC-CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCee-EEEEcc
Q 021648          214 RGTLLS--TYNVKPVSR-NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGS  289 (309)
Q Consensus       214 ~~~~~~--~~~~~~~~~-~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~~  289 (309)
                      ++....  .+...+.+. ..+..++++|+|+.+++...++.|.+||..+++.+..+..+...+.+++|+|+++ ++++..
T Consensus       208 ~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~  287 (314)
T 1pjx_A          208 PAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             TTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             CCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence            444221  111111121 3456789999999999888889999999987777776666667789999999998 666665


Q ss_pred             ce--EEEeeec
Q 021648          290 SE--LSFWIPD  298 (309)
Q Consensus       290 ~d--~~~~~~~  298 (309)
                      .+  +..+.++
T Consensus       288 ~~~~l~~~~~~  298 (314)
T 1pjx_A          288 ENNAVWKFEWQ  298 (314)
T ss_dssp             TTTEEEEEECS
T ss_pred             CCCeEEEEeCC
Confidence            53  4444443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.63  E-value=5.6e-14  Score=134.95  Aligned_cols=245  Identities=14%  Similarity=0.043  Sum_probs=153.2

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCC-----CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCC--------
Q 021648           10 YNGRISSMDFHKSSSYLVTASDD-----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--------   76 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D-----~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~--------   76 (309)
                      |+..+..++|||||++||.++.+     .+|++||+.+++.+.. ..+...+..++|+|+ +.+++++....        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44578899999999999887764     4699999999987653 112222357899999 98888764321        


Q ss_pred             ---CceeEEEEccCCce--EEEeee--cccCEEEEEecCCCCeEEEecCCC-----cEEEeeCCCc--eeeeeeeecC--
Q 021648           77 ---DESLRLLSLHDNKY--LRYFKG--HHDRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAE--KCQGLLRVQG--  140 (309)
Q Consensus        77 ---d~~i~~~d~~~~~~--~~~~~~--h~~~v~~v~~~~~~~~l~s~s~Dg-----~v~~Wd~~~~--~~~~~~~~~~--  140 (309)
                         ...|++|++.+++.  +..+..  |...+..+.|+|||++|+..+.++     .|.+||+.++  .+...+....  
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence               34589999977652  333333  334688999999999888777554     8999998765  3122222111  


Q ss_pred             ceeEEECCCCcEEEEEE----CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC-CC
Q 021648          141 RPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RG  215 (309)
Q Consensus       141 ~~~~~~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~-~~  215 (309)
                      .......+.+.++..+.    ...|.+||+.... ....... ......+..++++ ++.++++...|+..+||... ++
T Consensus       319 ~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g  395 (741)
T 1yr2_A          319 QWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG  395 (741)
T ss_dssp             CEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS
T ss_pred             eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence            11222222333444443    2469999976532 1111111 1222234456666 56778888888887776543 35


Q ss_pred             eEeEEeeecCCCCCccceEEECCCCCEEE----EEcCCCcEEEEECCCCc
Q 021648          216 TLLSTYNVKPVSRNSTLEASFSPEGMFVI----SGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~sp~g~~l~----s~s~Dg~i~vwd~~~~~  261 (309)
                      .....+...  ....+..++++|+++.++    +....++|++||+.+++
T Consensus       396 ~~~~~l~~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          396 KPAGAVSLP--GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             CEEEECBCS--SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CceeeccCC--CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            544444321  234566788999998766    33445799999998876

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.63  E-value=6e-13  Score=115.35  Aligned_cols=242  Identities=13%  Similarity=0.156  Sum_probs=164.9

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR   92 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~   92 (309)
                      ....+.+. ++++.++...+++|.+||..+++.+.++... .....+++++++ .++.+.  .+++.|.++|.++++.+.
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~-~~p~~i~~~~~g-~lyv~~--~~~~~v~~iD~~t~~~~~  119 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF-TSPRYIHFLSDE-KAYVTQ--IWDYRIFIINPKTYEITG  119 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC-SSEEEEEEEETT-EEEEEE--BSCSEEEEEETTTTEEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC-CCCcEEEEeCCC-eEEEEE--CCCCeEEEEECCCCeEEE
Confidence            35667775 3556677777899999999999998888543 346778888887 555543  237899999999998776


Q ss_pred             Eeeecc-----cCEEEEEecCCCCeEEEec-CCCcEEEeeCCCceeeeeeeecCce-eEEECCCCcEEEEEEC-------
Q 021648           93 YFKGHH-----DRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVAFG-------  158 (309)
Q Consensus        93 ~~~~h~-----~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------  158 (309)
                      .+....     .....+++ .+++.+++.. .+++|.++|+++++....+.....+ ...+++++.++.+..+       
T Consensus       120 ~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~  198 (328)
T 3dsm_A          120 YIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPY  198 (328)
T ss_dssp             EEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred             EEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCcc
Confidence            665332     14456666 4444445443 4899999999998877666554332 3566777776666543       


Q ss_pred             ----CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          159 ----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       159 ----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                          +.|.++|..+.+.  .....+.. ......++++|+++.+.....  .|.+||..+++....... .........+
T Consensus       199 ~~~~~~v~~id~~t~~v--~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~-~~~~~~p~gi  272 (328)
T 3dsm_A          199 GYEAPSLYRIDAETFTV--EKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFL-EFRDTKYYGL  272 (328)
T ss_dssp             CBCCCEEEEEETTTTEE--EEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSB-CCCSSCEEEE
T ss_pred             ccCCceEEEEECCCCeE--EEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeee-cCCCCceEEE
Confidence                6899999865321  11122211 125688999999988877654  999999988775321111 1112456779


Q ss_pred             EECC-CCCEEEEE----cCCCcEEEEECCCCceEEEee
Q 021648          235 SFSP-EGMFVISG----SGDGSVYAWSVRSGKEVASWM  267 (309)
Q Consensus       235 ~~sp-~g~~l~s~----s~Dg~i~vwd~~~~~~~~~~~  267 (309)
                      +++| +++.+++.    ..++.|.+||.. ++.+.++.
T Consensus       273 ~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          273 TVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             EEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence            9999 56666666    678999999997 88887764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.61  E-value=7.7e-12  Score=115.96  Aligned_cols=275  Identities=10%  Similarity=0.095  Sum_probs=182.2

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcC--CCceeeeeeccccceeEEEEe----cCCCEEEEEcCCCC
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFT----SHPTTVIYSSKNGW   76 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~s~~g~   76 (309)
                      ++.++.. ...+..+.|+|||+++.+++.|+.|.+||+.  +++.+.++..... ...++|+    |++++++++..  +
T Consensus       189 v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~--~  264 (567)
T 1qks_A          189 IKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAY--W  264 (567)
T ss_dssp             EEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEE--E
T ss_pred             EEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEc--c
Confidence            3444443 2345689999999999999999999999996  7888877776443 4678999    69998887753  4


Q ss_pred             CceeEEEEccCCceEEEeee----------ccc-CEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeee--cC-c
Q 021648           77 DESLRLLSLHDNKYLRYFKG----------HHD-RVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRV--QG-R  141 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~----------h~~-~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~--~~-~  141 (309)
                      ++++.++|..+.+.++.+.-          |.. .+..+..++++. ++++...+|.|.++|....+.......  .. .
T Consensus       265 ~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~  344 (567)
T 1qks_A          265 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFL  344 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSE
T ss_pred             CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccc
Confidence            78999999999888877642          323 678888888755 556667789999999876543222211  11 1


Q ss_pred             eeEEECCCCcEEEEEE--CCEEEEEECCCCCcCCceEEEe-CCCCCCCeEEE-EccCC-CEEEEEe-CCCcEEEEECCC-
Q 021648          142 PAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSV-GGDISDANVVK-FSNDG-RLMLLTT-MEGHIHVLDSFR-  214 (309)
Q Consensus       142 ~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~v~-~s~dg-~~l~~~~-~dg~v~i~d~~~-  214 (309)
                      ....+++++.++.++.  ++.|.++|+.+.+.  ...... ........... ++|++ ..++++. .++.|.++|..+ 
T Consensus       345 ~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl--~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~  422 (567)
T 1qks_A          345 HDGGLDGSHRYFITAANARNKLVVIDTKEGKL--VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE  422 (567)
T ss_dssp             EEEEECTTSCEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             cCceECCCCCEEEEEeCCCCeEEEEECCCCcE--EEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence            2345777777665543  58999999876431  122233 21111112222 58874 4445553 568999999877 


Q ss_pred             ------CeEeEEeeecCCCCCccceEEECCCCCEEEEEcC-------CCcEEEEECCCC-----ce-EEEee-----cC-
Q 021648          215 ------GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-------DGSVYAWSVRSG-----KE-VASWM-----SF-  269 (309)
Q Consensus       215 ------~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~-------Dg~i~vwd~~~~-----~~-~~~~~-----~~-  269 (309)
                            .+.+.++....   ....-+..+|+++++.....       ..+|.|+|+.+.     .. ...+.     .. 
T Consensus       423 ~~~~~~~kvv~~i~~~g---~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~  499 (567)
T 1qks_A          423 GHPDNAWKILDSFPALG---GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGIT  499 (567)
T ss_dssp             TCTTTBTSEEEEEECSC---SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCC
T ss_pred             CCccccCEEEEEEecCC---CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccC
Confidence                  45666655422   22234788999999998763       359999999876     21 12221     11 


Q ss_pred             --CCCCcEEEECCCeeEEE
Q 021648          270 --DTEPPVIKWTPGSLMFV  286 (309)
Q Consensus       270 --~~~v~~l~~~p~~~~l~  286 (309)
                        ...+..+.|+|+|+.+.
T Consensus       500 ~~~~~~~~~~~~~~G~~~~  518 (567)
T 1qks_A          500 EGQPRVVQGEFNKDGTEVW  518 (567)
T ss_dssp             SSCCEEEEEEECTTSSEEE
T ss_pred             CCCcceEeeeECCCCCEEE
Confidence              34567899999997543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.60  E-value=7.5e-13  Score=112.71  Aligned_cols=214  Identities=15%  Similarity=0.159  Sum_probs=144.9

Q ss_pred             ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEE
Q 021648           44 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL  123 (309)
Q Consensus        44 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~  123 (309)
                      ..++.+..+......++|.++++.++++..  .++.|..||..++  ...+..+...+.+++++++++.+++...++.|.
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~--~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~   93 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDV--RQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE   93 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEG--GGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeC--CCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence            334444444445678899999985555432  2678999999887  666777888899999999999888887789999


Q ss_pred             EeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEE--
Q 021648          124 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT--  201 (309)
Q Consensus       124 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~--  201 (309)
                      +||.++++.......                  ..+                     .....++.++++|+|+++++.  
T Consensus        94 ~~d~~~g~~~~~~~~------------------~~~---------------------~~~~~~~~i~~d~~G~l~vtd~~  134 (296)
T 3e5z_A           94 RQREPGGEWESIADS------------------FEG---------------------KKLNSPNDVCLAPDGSLWFSDPT  134 (296)
T ss_dssp             EECSTTCCEEEEECE------------------ETT---------------------EECCCCCCEEECTTSCEEEEECS
T ss_pred             EEcCCCCcEEEEeec------------------cCC---------------------CCCCCCCCEEECCCCCEEEECCc
Confidence            999876653221100                  000                     001234568899999988873  


Q ss_pred             --e-------------CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC-CCce---
Q 021648          202 --T-------------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR-SGKE---  262 (309)
Q Consensus       202 --~-------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~-~~~~---  262 (309)
                        +             ..+.|..+|.. ++... +.   ........++|+|||+.+++.+.++.|++|++. +++.   
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~---~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~  209 (296)
T 3e5z_A          135 YGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA-PI---RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ  209 (296)
T ss_dssp             HHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE-EE---CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE
T ss_pred             cccccccccccccccCCCcEEEEECCC-CCEEE-ee---cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC
Confidence              2             13467777765 44332 21   122344678999999999888889999999996 4543   


Q ss_pred             EEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCCCcccc
Q 021648          263 VASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAY  305 (309)
Q Consensus       263 ~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~~~~  305 (309)
                      ...+..+...+..++++|+|++.++....+.+|.++...+..+
T Consensus       210 ~~~~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~g~~~~~~  252 (296)
T 3e5z_A          210 GVHFTVEPGKTDGLRVDAGGLIWASAGDGVHVLTPDGDELGRV  252 (296)
T ss_dssp             EEEECCSSSCCCSEEEBTTSCEEEEETTEEEEECTTSCEEEEE
T ss_pred             CeEeeCCCCCCCeEEECCCCCEEEEcCCeEEEECCCCCEEEEE
Confidence            2233334556788999999998877755678888775544433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.57  E-value=7.5e-12  Score=111.75  Aligned_cols=242  Identities=9%  Similarity=0.035  Sum_probs=160.2

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR   92 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~   92 (309)
                      ....|+|+|+++++++...++.|++||..++........... .. ++++++++.++++...+ ...|.+++...+....
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~-~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEG-THTVYVYMKASGWAPT  208 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSST-TCEEEEEEGGGTTCEE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCC-CceEEEEEcCCCceeE
Confidence            567899999999888888889999999988776655544333 33 89999998887775422 2278888887665444


Q ss_pred             Ee----eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCC
Q 021648           93 YF----KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK  168 (309)
Q Consensus        93 ~~----~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  168 (309)
                      .+    ..+...+.+++++|++..|..+..++.|+.||..++... .+...                  +          
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~------------------~----------  259 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQL------------------E----------  259 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEEC------------------C----------
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecc------------------c----------
Confidence            44    224466788999995444555666889999998655321 11000                  0          


Q ss_pred             CCcCCceEEEeCCCCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEeEEeeecC------------CCCCccceEE
Q 021648          169 YEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP------------VSRNSTLEAS  235 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~------------~~~~~~~~~~  235 (309)
                       ..+.      .+ ..+.+.++++| ++.++++...++.|+.||.... .. .+....            ..-.....++
T Consensus       260 -~~g~------~~-~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia  329 (409)
T 3hrp_A          260 -LSGS------LG-TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CE-WFCGSATQKTVQDGLREEALFAQPNGMT  329 (409)
T ss_dssp             -CCSC------CC-CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EE-EEEECTTCCSCBCEEGGGCBCSSEEEEE
T ss_pred             -ccCC------CC-CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EE-EEEeCCCCCCcCCCcccccEeCCCeEEE
Confidence             0000      00 00112789999 5777777788899999987533 22 221111            0012356799


Q ss_pred             ECCCCCEEEEEc-CCCcEEEEECCCCceEEEeecCC---------------CCCcEEEECCCeeEEEEccceEEEeee
Q 021648          236 FSPEGMFVISGS-GDGSVYAWSVRSGKEVASWMSFD---------------TEPPVIKWTPGSLMFVTGSSELSFWIP  297 (309)
Q Consensus       236 ~sp~g~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~---------------~~v~~l~~~p~~~~l~s~~~d~~~~~~  297 (309)
                      ++|+|+.+++-+ .++.|+.|++.+++ +.++.++.               ..+..|+++|++.++++-....+++..
T Consensus       330 ~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          330 VDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             ECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             EeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence            999999888888 89999999987775 44444441               246779999999888887766555443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.57  E-value=1.8e-12  Score=115.50  Aligned_cols=257  Identities=11%  Similarity=0.104  Sum_probs=166.6

Q ss_pred             EEEeCCCCCEEEEee----------CCCcEEEEEcCCCceeeeeecc-------ccceeEEEEecCCCEEEEEcCCCCCc
Q 021648           16 SMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSK-------KYGVDLVCFTSHPTTVIYSSKNGWDE   78 (309)
Q Consensus        16 ~i~~s~~~~~l~t~s----------~D~~v~iWd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~s~~g~d~   78 (309)
                      .+.++|||++|..+.          .+++|.++|..+++.+.++...       ......+++++++++++.+... .++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~-~~~  200 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS-PAP  200 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS-SSC
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC-CCC
Confidence            799999999887765          3679999999999988887532       1224568999999998887531 257


Q ss_pred             eeEEEEccCCceEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeee----eeeecCce---eEEECCC-
Q 021648           79 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQG----LLRVQGRP---AAAYDDQ-  149 (309)
Q Consensus        79 ~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~----~~~~~~~~---~~~~~~~-  149 (309)
                      .|.+.|+.+++.+..+.--.  .  ....|++ +.+++.+.||++.+.+..+++...    .+.....+   ...+.++ 
T Consensus       201 ~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg  276 (426)
T 3c75_H          201 AVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS  276 (426)
T ss_dssp             EEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred             eEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence            89999999998877765311  1  2233433 456677778888777775554331    11111111   1223433 


Q ss_pred             CcEEEEEECCEEEEEECCCCCcCCceEEEeCC--------CCCCCeEEEEccCCCEEEEEeC----------CCcEEEEE
Q 021648          150 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDGRLMLLTTM----------EGHIHVLD  211 (309)
Q Consensus       150 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~v~~s~dg~~l~~~~~----------dg~v~i~d  211 (309)
                      +.++.....+.+.+.|...........+.+..        .......++++||++.+.....          .+.|.++|
T Consensus       277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID  356 (426)
T 3c75_H          277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN  356 (426)
T ss_dssp             CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence            34455556788888887532110000011100        0112234689999876555432          35799999


Q ss_pred             CCCCeEeEEeeecCCCCCccceEEECCCCC-EEEEEc-CCCcEEEEECCCCceEEEeecCCCCCcEEEECCCe
Q 021648          212 SFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS-GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS  282 (309)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~  282 (309)
                      ..+.+.+.++...    .....++|+|||+ +++++. .++.|.|+|+.+++.++++..-. .-+.+..+||.
T Consensus       357 ~~T~kvv~~I~vg----~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG-~~P~~i~~~~~  424 (426)
T 3c75_H          357 AETGERINKIELG----HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLG-RGPQIITTHDM  424 (426)
T ss_dssp             TTTCCEEEEEEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCS-SSCCEEECCCC
T ss_pred             CCCCeEEEEEECC----CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCC-CCCcEEEcCCC
Confidence            9999999887642    2356799999999 888887 59999999999999998873222 33446666653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.56  E-value=2.1e-12  Score=113.34  Aligned_cols=275  Identities=11%  Similarity=0.027  Sum_probs=179.9

Q ss_pred             EEeCCCCCEEEEeeC-----CCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC-------CCCceeEEEE
Q 021648           17 MDFHKSSSYLVTASD-----DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLS   84 (309)
Q Consensus        17 i~~s~~~~~l~t~s~-----D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------g~d~~i~~~d   84 (309)
                      +...|+++++.....     +++|.+.|..+++.+.++.....+ . ++++|+++.++.+...       ..++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            445789988766654     789999999999999998876655 4 9999999988776420       1256799999


Q ss_pred             ccCCceEEEeeecc-------cCEEEEEecCCCCeEEEecC--CCcEEEeeCCCceeeeeeeecCceeEEEC-CCCcEEE
Q 021648           85 LHDNKYLRYFKGHH-------DRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYD-DQGLVFA  154 (309)
Q Consensus        85 ~~~~~~~~~~~~h~-------~~v~~v~~~~~~~~l~s~s~--Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  154 (309)
                      ..+.+.+..+.-..       .....+.|+|||+++..+..  +++|.++|+++.+....+...+.. ..+. ....+++
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~-~~~P~g~~~~~~  194 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY-HIFPTAPDTFFM  194 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-EEEEEETTEEEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcc-eeecCCCceeEE
Confidence            99999887764221       24567899999998877753  689999999999988888765532 2222 2334556


Q ss_pred             EEECCEEEEEECCCCCcCCceEEE--eCCCCCCC-eEEEE-ccCCCEEEEEeCCCcEEEEECCCCe--EeEEeeec----
Q 021648          155 VAFGGYIRMFDARKYEKGPFDIFS--VGGDISDA-NVVKF-SNDGRLMLLTTMEGHIHVLDSFRGT--LLSTYNVK----  224 (309)
Q Consensus       155 ~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~-~~v~~-s~dg~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~----  224 (309)
                      .+.||.+.+.++.....- .....  .......+ ....| .++|+++. .+.+|+|+++|..++.  .+..+...    
T Consensus       195 ~~~DG~~~~v~~~~~g~v-~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~  272 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTP-EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAE  272 (386)
T ss_dssp             EETTSCEEEEECCSSSCC-EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred             ECCCCCEEEEECCCCCeE-EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccc
Confidence            677888888877541111 01000  00001111 11245 46886544 5668999999986553  33332210    


Q ss_pred             ---CCCCCccceEEECCCCCEEEEEcC----------CCcEEEEECCCCceEEEeecCCCCCcEEEECCCee-EE-EEcc
Q 021648          225 ---PVSRNSTLEASFSPEGMFVISGSG----------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MF-VTGS  289 (309)
Q Consensus       225 ---~~~~~~~~~~~~sp~g~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l-~s~~  289 (309)
                         .........++++|+++.++.+-.          ...|.+.|+.+++.++.+.. ...+..|+++||++ +| ++..
T Consensus       273 ~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~  351 (386)
T 3sjl_D          273 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALST  351 (386)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEET
T ss_pred             ccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcC
Confidence               000112234788999988888642          25799999999999888753 23578999999986 44 4333


Q ss_pred             --ceEEEeee
Q 021648          290 --SELSFWIP  297 (309)
Q Consensus       290 --~d~~~~~~  297 (309)
                        .++.++..
T Consensus       352 ~~~~VsViD~  361 (386)
T 3sjl_D          352 GDKTLYIHDA  361 (386)
T ss_dssp             TTTEEEEEET
T ss_pred             CCCeEEEEEC
Confidence              34555544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.55  E-value=2e-11  Score=104.17  Aligned_cols=235  Identities=12%  Similarity=0.105  Sum_probs=150.5

Q ss_pred             eEecCCCcceEEEEeCCC-CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            5 MSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~-~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      ..+..+..--.+..|+|+ +.++++...++.|..||..+++. ..+. ....+..+++.++++.++ +.    +..|.+|
T Consensus         6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v-~~----~~~l~~~   78 (297)
T 3g4e_A            6 CVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVA-TI----GTKFCAL   78 (297)
T ss_dssp             EEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEE-EE----TTEEEEE
T ss_pred             EEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEE-EE----CCeEEEE
Confidence            334444455668899995 55677777899999999987754 2232 234578899999998444 33    4579999


Q ss_pred             EccCCceEEEeee----cccCEEEEEecCCCCeEEEecCCC---------cEEEeeCCCceeeeeeeecCceeEEECCCC
Q 021648           84 SLHDNKYLRYFKG----HHDRVVSLSLCSSKDCFISGSLDR---------TVLLWDQRAEKCQGLLRVQGRPAAAYDDQG  150 (309)
Q Consensus        84 d~~~~~~~~~~~~----h~~~v~~v~~~~~~~~l~s~s~Dg---------~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~  150 (309)
                      |.++++.......    ....++.+.+.|+|++.++...+.         .-.+|.+.                   +++
T Consensus        79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d-------------------~~g  139 (297)
T 3g4e_A           79 NWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLF-------------------PDH  139 (297)
T ss_dssp             ETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEEC-------------------TTS
T ss_pred             ECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEE-------------------CCC
Confidence            9988764433221    124578899999998666543221         11121111                   111


Q ss_pred             cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEE-EEEeCCCcEEEEEC--CCCeEeE--EeeecC
Q 021648          151 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDS--FRGTLLS--TYNVKP  225 (309)
Q Consensus       151 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l-~~~~~dg~v~i~d~--~~~~~~~--~~~~~~  225 (309)
                      .+.        .+.+                .....+.++++||++.+ ++.+.++.|.+||.  .++.+..  .+....
T Consensus       140 ~~~--------~~~~----------------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~  195 (297)
T 3g4e_A          140 HVK--------KYFD----------------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE  195 (297)
T ss_dssp             CEE--------EEEE----------------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC
T ss_pred             CEE--------EEee----------------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC
Confidence            100        0000                00123678999999865 55667889999986  4555421  121111


Q ss_pred             CCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEEC-CCee-EEEEcc
Q 021648          226 VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT-PGSL-MFVTGS  289 (309)
Q Consensus       226 ~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-p~~~-~l~s~~  289 (309)
                      .....+..+++.++|+.+++...++.|.+||..+++.+..+......+++++|. |+++ ++++..
T Consensus       196 ~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          196 KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            112345678999999988888888899999999899888887766788999998 8765 445543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.54  E-value=1.4e-12  Score=124.26  Aligned_cols=270  Identities=9%  Similarity=0.034  Sum_probs=164.1

Q ss_pred             CCCCCEEEEeeCCC---cEEEEEc--CCCceeeeee------ccccceeEEEEecCCCEEEEEcCC-C-CCceeEEEEcc
Q 021648           20 HKSSSYLVTASDDE---SIRLYDV--TAATCLKTIN------SKKYGVDLVCFTSHPTTVIYSSKN-G-WDESLRLLSLH   86 (309)
Q Consensus        20 s~~~~~l~t~s~D~---~v~iWd~--~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~s~~-g-~d~~i~~~d~~   86 (309)
                      +|+|++++-...++   .-.||-.  ..++....+.      +|...+..++|+|+++.++++... | .+.+|++||++
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            47899887777655   3566643  3444333322      334467889999999998876532 2 24799999999


Q ss_pred             CCceEEEeeecccCE--EEEEecCCCCeEEEecCCCc-------------EEEeeCCCceeee--eeeec----CceeEE
Q 021648           87 DNKYLRYFKGHHDRV--VSLSLCSSKDCFISGSLDRT-------------VLLWDQRAEKCQG--LLRVQ----GRPAAA  145 (309)
Q Consensus        87 ~~~~~~~~~~h~~~v--~~v~~~~~~~~l~s~s~Dg~-------------v~~Wd~~~~~~~~--~~~~~----~~~~~~  145 (309)
                      +++.+.  ..+...+  ..++|+|||+.|+.++.|..             |++|++.++....  .....    ......
T Consensus       156 tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~  233 (695)
T 2bkl_A          156 SGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD  233 (695)
T ss_dssp             TCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred             CCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence            988641  1122233  67899999999999998877             9999998765321  11211    123456


Q ss_pred             ECCCCcEEE-EEECC----EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe---CCCcEEEEECCCCeE
Q 021648          146 YDDQGLVFA-VAFGG----YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSFRGTL  217 (309)
Q Consensus       146 ~~~~~~~~~-~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~---~dg~v~i~d~~~~~~  217 (309)
                      +++++..++ ...++    .|.+++...   +....+..  .........+ ++|.+++...   .++.|.+||+.++..
T Consensus       234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~---~~~~~l~~--~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~  307 (695)
T 2bkl_A          234 LSRDGKYLFVYILRGWSENDVYWKRPGE---KDFRLLVK--GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPAR  307 (695)
T ss_dssp             ECTTSCCEEEEEEETTTEEEEEEECTTC---SSCEEEEE--CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSG
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEEcCCC---CceEEeec--CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCc
Confidence            777776444 34343    566665432   12222222  2233444444 6777444433   257899999877642


Q ss_pred             --eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC-CCceEEEeecC-CCCCcEEEECCCeeEEE-Ecc---
Q 021648          218 --LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR-SGKEVASWMSF-DTEPPVIKWTPGSLMFV-TGS---  289 (309)
Q Consensus       218 --~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~-~~~v~~l~~~p~~~~l~-s~~---  289 (309)
                        ...+.. ......+..++|+ +++.+++...|+..+||.+. +++....+..+ .+.+..++++|+++.++ +.+   
T Consensus       308 ~~~~~l~~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~  385 (695)
T 2bkl_A          308 ASWKEIVP-EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFT  385 (695)
T ss_dssp             GGCEEEEC-CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETT
T ss_pred             cCCeEEec-CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence              122211 1112345567887 77889999999988888664 45555555444 55677788999886554 332   


Q ss_pred             ceEEEeeecC
Q 021648          290 SELSFWIPDL  299 (309)
Q Consensus       290 ~d~~~~~~~~  299 (309)
                      ....+|.+++
T Consensus       386 ~P~~v~~~d~  395 (695)
T 2bkl_A          386 TPRQIYKTSV  395 (695)
T ss_dssp             EEEEEEEEET
T ss_pred             CCCEEEEEEC
Confidence            2355555544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.54  E-value=6.7e-13  Score=116.35  Aligned_cols=262  Identities=10%  Similarity=-0.003  Sum_probs=165.3

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEee----------CCCcEEEEEcCCCceeeeeeccc-------cceeEEEEecC
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSKK-------YGVDLVCFTSH   64 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s----------~D~~v~iWd~~~~~~~~~~~~~~-------~~v~~~~~~~~   64 (309)
                      +++.++..-..+  .+.++||++++..+.          .|++|.+||..+++.+.++....       .....++++|+
T Consensus        57 ~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD  134 (368)
T 1mda_H           57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC
Confidence            344455432334  799999999887775          37899999999999999886431       22457899999


Q ss_pred             CCEEEEEcCCCCCceeEE--EEccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCC-----ceeee--
Q 021648           65 PTTVIYSSKNGWDESLRL--LSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRA-----EKCQG--  134 (309)
Q Consensus        65 ~~~~~~~s~~g~d~~i~~--~d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~-----~~~~~--  134 (309)
                      +++++.+... -+..+.+  +|..+   ++.+.- .+ .  ..+.|+++ .+++.+.|+++.+.|+++     ++...  
T Consensus       135 Gk~lyVan~~-~~~~v~V~~iD~~t---v~~i~v-~~-~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~  206 (368)
T 1mda_H          135 SACLLFFLFG-SSAAAGLSVPGASD---DQLTKS-AS-C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             SSCEEEEECS-SSCEEEEEETTTEE---EEEEEC-SS-C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             CCEEEEEccC-CCCeEEEEEEchhh---ceEEEC-CC-c--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence            9998887532 1456888  88876   333321 01 1  12335443 556677888888888876     33221  


Q ss_pred             --eeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeC-------C-CCCCCeEEEEccCCCEEEEEeC-
Q 021648          135 --LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG-------G-DISDANVVKFSNDGRLMLLTTM-  203 (309)
Q Consensus       135 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-------~-~~~~~~~v~~s~dg~~l~~~~~-  203 (309)
                        .+.....+. ...+.+.++.... +.+.+.|.............+.       + .......++++||++.+..+.. 
T Consensus       207 t~~i~vg~~P~-~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~  284 (368)
T 1mda_H          207 TGAQNCSSQAA-QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE  284 (368)
T ss_dssp             CTTSCBCSCCE-EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred             eeeeeCCCCcc-ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence              122222233 2444455555555 8888888753211000000000       0 0011223689999987765432 


Q ss_pred             --------CCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC-EEEEEc-CCCcEEEEECCCCceEEEeecCCCCC
Q 021648          204 --------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS-GDGSVYAWSVRSGKEVASWMSFDTEP  273 (309)
Q Consensus       204 --------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~v  273 (309)
                              ++.+.++|+.+++.+.++...    .....++|+|||+ .+++.. .++.|.|+|+.+++.++++.... ..
T Consensus       285 ~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~-~P  359 (368)
T 1mda_H          285 HSRSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK-GP  359 (368)
T ss_dssp             CSSCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS-CC
T ss_pred             ccCcccccCCCEEEEECCCCeEEEEEECC----CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC-CC
Confidence                    235679999999988876542    2456799999998 455666 59999999999999998886543 45


Q ss_pred             cEEEECC
Q 021648          274 PVIKWTP  280 (309)
Q Consensus       274 ~~l~~~p  280 (309)
                      ..+++++
T Consensus       360 ~~i~~~~  366 (368)
T 1mda_H          360 ESLSVQN  366 (368)
T ss_dssp             CEEECCC
T ss_pred             CEEEeec
Confidence            6666654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.51  E-value=5.4e-12  Score=112.46  Aligned_cols=273  Identities=9%  Similarity=0.007  Sum_probs=177.0

Q ss_pred             CCCCEE-EEeeCC----CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC-------CCCceeEEEEccCC
Q 021648           21 KSSSYL-VTASDD----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDN   88 (309)
Q Consensus        21 ~~~~~l-~t~s~D----~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------g~d~~i~~~d~~~~   88 (309)
                      |+++++ ++...+    ++|.+.|..+++.+.++.....+  .++++|+++.++.+...       ..++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            456654 444433    79999999999999999876665  78999999988877521       12568999999999


Q ss_pred             ceEEEeeec-------ccCEEEEEecCCCCeEEEecC--CCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECC
Q 021648           89 KYLRYFKGH-------HDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG  159 (309)
Q Consensus        89 ~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~s~--Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (309)
                      +.+..+.--       ......+.|+||++++..+..  +++|.+.|+.+.+....+.+.+...........+++...||
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG  239 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG  239 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence            988776421       123457899999998888764  57899999999988877766443112222233455555677


Q ss_pred             EEEEEECCCCCcCCc--eEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe--EEeeecC---C----CC
Q 021648          160 YIRMFDARKYEKGPF--DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL--STYNVKP---V----SR  228 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~--~~~~~~~---~----~~  228 (309)
                      .+.+.+....+....  ..+..... .-...+.+++++..++.....++|.+.|.......  .++....   .    ..
T Consensus       240 ~~~~V~~~~~~v~~~~~~~~~v~~~-p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p  318 (426)
T 3c75_H          240 SLARVDFADGETKVTNTEVFHTEDE-LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP  318 (426)
T ss_dssp             SEEEEECCTTCCEEEECCCCSCTTS-CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred             CEEEEECCCCcEEEEeeeeeccCCC-ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence            777666622110000  00111100 00123467999988888788899999998654422  1221100   0    00


Q ss_pred             CccceEEECCCCCEEEEEcC----------CCcEEEEECCCCceEEEeecCCCCCcEEEECCCee-EEEEccc-e--EEE
Q 021648          229 NSTLEASFSPEGMFVISGSG----------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGSS-E--LSF  294 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~~~-d--~~~  294 (309)
                      .....++++||+++++....          ++.|.+.|+.+.+.++++.. ......++|+||++ ++.+... +  +.+
T Consensus       319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsV  397 (426)
T 3c75_H          319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHI  397 (426)
T ss_dssp             CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred             CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEE
Confidence            11123789999987777632          35799999999999988753 23578999999998 6666553 4  544


Q ss_pred             eee
Q 021648          295 WIP  297 (309)
Q Consensus       295 ~~~  297 (309)
                      ...
T Consensus       398 ID~  400 (426)
T 3c75_H          398 YDA  400 (426)
T ss_dssp             EET
T ss_pred             EEC
Confidence            443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.51  E-value=5.5e-12  Score=106.59  Aligned_cols=173  Identities=9%  Similarity=0.052  Sum_probs=129.4

Q ss_pred             CCceeEEEEccCCceEEEeeecc-cCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEE
Q 021648           76 WDESLRLLSLHDNKYLRYFKGHH-DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA  154 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (309)
                      .|+.|.+||.++|+.++.+..+. ..+.++.+.|+|+.+++  .++.|..||. +++.+..+...               
T Consensus        13 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~---------------   74 (276)
T 3no2_A           13 GWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAP---------------   74 (276)
T ss_dssp             TCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECC---------------
T ss_pred             CCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCC---------------
Confidence            38899999999999999998876 57899999999998883  4778999987 56543332210               


Q ss_pred             EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC-CCcEEEEECCCCeEeEEeeecCC---CCCc
Q 021648          155 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPV---SRNS  230 (309)
Q Consensus       155 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~---~~~~  230 (309)
                                                 ....+.++.+.|||+++++.+. ++.|..+|. +|+.+.++.....   +...
T Consensus        75 ---------------------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~  126 (276)
T 3no2_A           75 ---------------------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQ  126 (276)
T ss_dssp             ---------------------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGS
T ss_pred             ---------------------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccccc
Confidence                                       0012345678899999998887 888888886 6787776654211   1123


Q ss_pred             cceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEee
Q 021648          231 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWI  296 (309)
Q Consensus       231 ~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~  296 (309)
                      ...+++.++|+++++.+.++.|.+||.. ++.+.++... ..+..+...|+++.++++..+.++..
T Consensus       127 ~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~  190 (276)
T 3no2_A          127 FRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQ  190 (276)
T ss_dssp             CSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEE
T ss_pred             ccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEE
Confidence            4456889999999999999999999997 9988887654 35667888999998887776534433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.51  E-value=5.2e-12  Score=120.38  Aligned_cols=245  Identities=13%  Similarity=0.105  Sum_probs=153.1

Q ss_pred             CCCcceEEEEeCCCCCEEE-----EeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC---------
Q 021648            9 DYNGRISSMDFHKSSSYLV-----TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN---------   74 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~-----t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~---------   74 (309)
                      +|...+..++|||||++||     +|+.+.+|++||+.+|+.+... .+......++|+ |++.+++++..         
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            4566788999999999988     4444578999999999865431 111113567899 99999888754         


Q ss_pred             -CCCceeEEEEccCCce--EEEe--ee-cccCEEEEEecCCCCeEEE-ec---CCCcEEEeeCCCce-eeeeeeecC--c
Q 021648           75 -GWDESLRLLSLHDNKY--LRYF--KG-HHDRVVSLSLCSSKDCFIS-GS---LDRTVLLWDQRAEK-CQGLLRVQG--R  141 (309)
Q Consensus        75 -g~d~~i~~~d~~~~~~--~~~~--~~-h~~~v~~v~~~~~~~~l~s-~s---~Dg~v~~Wd~~~~~-~~~~~~~~~--~  141 (309)
                       +....|++|++.++..  +..+  .. |.....++.++||+++|+- .+   .+..+.+||+.++. ....+....  .
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence             2235699999877542  3333  33 5556788999999997643 32   23589999987653 122222111  1


Q ss_pred             eeEEECCCCcEEEEEE----CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC---cEEEEECCC
Q 021648          142 PAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFR  214 (309)
Q Consensus       142 ~~~~~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg---~v~i~d~~~  214 (309)
                      ......+.+.++..+.    .+.|..+|+..........+.  .+...+.  .++++++.|+....++   .|++||+..
T Consensus       284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--PERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence            1122223344444443    257889998764322222222  2333443  8999999887766544   688999874


Q ss_pred             CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC----CcEEEEECCCCce
Q 021648          215 GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD----GSVYAWSVRSGKE  262 (309)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D----g~i~vwd~~~~~~  262 (309)
                      +. ...+...  ....+..+.++|+++.++....+    ++++.||+.+++.
T Consensus       360 ~~-~~~l~~p--~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          360 KR-VREVALP--GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             CE-EEEECCS--SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             Ce-eEEeecC--CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            43 3333221  22344556778888777665444    7899999987753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.48  E-value=1.6e-11  Score=117.85  Aligned_cols=272  Identities=12%  Similarity=0.091  Sum_probs=163.6

Q ss_pred             CCCCCEEEEeeCCCc---EEEEEcC-----CCceeeee------eccccceeEEEEecCCCEEEEEcCCCCC--ceeEEE
Q 021648           20 HKSSSYLVTASDDES---IRLYDVT-----AATCLKTI------NSKKYGVDLVCFTSHPTTVIYSSKNGWD--ESLRLL   83 (309)
Q Consensus        20 s~~~~~l~t~s~D~~---v~iWd~~-----~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~s~~g~d--~~i~~~   83 (309)
                      +|+|++++-...++.   -.||-..     .++....+      .++...+...+|+|+++.+++++..+-+  .+|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            489998887776554   6777543     33322221      2223357788999999999887643222  579999


Q ss_pred             EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCc--------------EEEeeCCCceeee--eeeecC----cee
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT--------------VLLWDQRAEKCQG--LLRVQG----RPA  143 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~--------------v~~Wd~~~~~~~~--~~~~~~----~~~  143 (309)
                      |+++++.+.. ..+...+..++|+|| +.|+.++.|+.              |.+|++.++....  ......    ...
T Consensus       195 dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          195 GVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             ETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             ECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            9999987543 112222357899999 98888877665              8899987665321  112111    234


Q ss_pred             EEECCCCcEEEE-EEC-----CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC----CCcEEEEECC
Q 021648          144 AAYDDQGLVFAV-AFG-----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM----EGHIHVLDSF  213 (309)
Q Consensus       144 ~~~~~~~~~~~~-~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~----dg~v~i~d~~  213 (309)
                      ..+++++..++. ..+     ..|.+||+..........+.  ......... ++|+|+.|+..+.    ++.|.+||+.
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~  349 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI--PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLS  349 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE--CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec--CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            567788865544 333     38999998653111022222  222233333 4689998888775    3459999987


Q ss_pred             CCe-EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC-CCceEEEeec-CCCCCcEEEECCCeeEEE-Ecc
Q 021648          214 RGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR-SGKEVASWMS-FDTEPPVIKWTPGSLMFV-TGS  289 (309)
Q Consensus       214 ~~~-~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~-~~~~v~~l~~~p~~~~l~-s~~  289 (309)
                      ++. ....+.  +.+...+..++++ ++..+++...|+..+||.+. +++....+.. ..+.+..++++|+++.++ +.+
T Consensus       350 ~~~~~~~~l~--~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s  426 (741)
T 1yr2_A          350 GSTPRFDTVV--PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFS  426 (741)
T ss_dssp             SSSCEEEEEE--CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred             CCccccEEEe--cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence            742 222222  1223334456776 66788888999987777654 4555555543 355678899999886444 332


Q ss_pred             ---ceEEEeeecC
Q 021648          290 ---SELSFWIPDL  299 (309)
Q Consensus       290 ---~d~~~~~~~~  299 (309)
                         ....+|.+++
T Consensus       427 s~~~P~~i~~~d~  439 (741)
T 1yr2_A          427 SFTQPATVLALDP  439 (741)
T ss_dssp             ETTEEEEEEEEET
T ss_pred             CCCCCCEEEEEEC
Confidence               2355555554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.48  E-value=4.5e-10  Score=94.87  Aligned_cols=235  Identities=8%  Similarity=0.073  Sum_probs=157.0

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee--ccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   87 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~   87 (309)
                      +...+.++.++++|.+.++...++.|..||.. ++. ..+.  .....+..+++.+++...++...   ++.+..||. +
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~d~-~  128 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMN---GNRIGRITD-D  128 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETT---TTEEEEECT-T
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecC---CceEEEECC-C
Confidence            45678899999999998888778999999976 332 2222  23335677888887765544332   568999998 5


Q ss_pred             CceEEE-eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeee-eeec--CceeEEECCCCcEEEEEE-CCEEE
Q 021648           88 NKYLRY-FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL-LRVQ--GRPAAAYDDQGLVFAVAF-GGYIR  162 (309)
Q Consensus        88 ~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~-~~~i~  162 (309)
                      ++.... ...+...+.++++.++++..++...++.|..||. +++.... ....  ......+++++.++.+.. ++.|.
T Consensus       129 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  207 (299)
T 2z2n_A          129 GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIG  207 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence            544322 2334567899999999988887777889999998 5544322 1111  122455666677665553 67899


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  242 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  242 (309)
                      .||. ..   .+..+........+..++++++|+++++...++.|..||. ++.. ..+... .....+..+++ ++|+.
T Consensus       208 ~~~~-~g---~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~-~~~~~~~~i~~-~~g~l  279 (299)
T 2z2n_A          208 RITT-SG---EITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQ-IKSAEPHGICF-DGETI  279 (299)
T ss_dssp             EECT-TC---CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECS-SSSCCEEEEEE-CSSCE
T ss_pred             EECC-CC---cEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCC-CCCCccceEEe-cCCCE
Confidence            9987 32   2223333333456788999999998887778899999998 4543 333322 22345677888 99988


Q ss_pred             EEEEcCCCcEEEEECCCC
Q 021648          243 VISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       243 l~s~s~Dg~i~vwd~~~~  260 (309)
                      +++.+ .+.+..++..+.
T Consensus       280 ~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          280 WFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             EEEET-TTEEEEEEEC--
T ss_pred             EEEec-CCcEEEEEcCcc
Confidence            88776 566888887654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.47  E-value=1e-11  Score=103.83  Aligned_cols=200  Identities=8%  Similarity=0.031  Sum_probs=137.8

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648           12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   90 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~   90 (309)
                      ..+.+++++++|+++++.. ++.|.+||..+... ..+. .....+..+++.+++...++...   ++.|.+|+..+...
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~---~~~i~~~~~~~~~~  141 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRG---NNRVVKLAAGSKTQ  141 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGG---GTEEEEECTTCCSC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECC---CCEEEEEECCCcee
Confidence            4678899999999777776 88999999875543 2232 22235678889888874444332   56888897655443


Q ss_pred             EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCC
Q 021648           91 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE  170 (309)
Q Consensus        91 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  170 (309)
                      ..........+.++++.++++.+++...++.|.+||..........                                  
T Consensus       142 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~----------------------------------  187 (270)
T 1rwi_B          142 TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP----------------------------------  187 (270)
T ss_dssp             EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC----------------------------------
T ss_pred             EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec----------------------------------
Confidence            3322333456788999999988888777889999987544221000                                  


Q ss_pred             cCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC
Q 021648          171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG  250 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg  250 (309)
                               .........++++++|.++++...++.|.+||........ ..  ......+..++++|+|+.+++...++
T Consensus       188 ---------~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~--~~~~~~p~~i~~~~~g~l~v~~~~~~  255 (270)
T 1rwi_B          188 ---------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP--FTGLNTPLAVAVDSDRTVYVADRGND  255 (270)
T ss_dssp             ---------CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC--CCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred             ---------ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec--cCCCCCceeEEECCCCCEEEEECCCC
Confidence                     0001234678999999888888889999999986543322 11  11224567899999999999999999


Q ss_pred             cEEEEECCCCce
Q 021648          251 SVYAWSVRSGKE  262 (309)
Q Consensus       251 ~i~vwd~~~~~~  262 (309)
                      .|++++....+.
T Consensus       256 ~v~~~~~~~~~~  267 (270)
T 1rwi_B          256 RVVKLTSLEHHH  267 (270)
T ss_dssp             EEEEECCCGGGS
T ss_pred             EEEEEcCCCccc
Confidence            999999976543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.47  E-value=1.7e-10  Score=98.60  Aligned_cols=246  Identities=9%  Similarity=0.060  Sum_probs=139.4

Q ss_pred             EecCCCcceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            6 SFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      .+..+........|+|+|+ ++++...++.|..|+. +++ ...+......+..+++.++++.+++...   ++.|.+|+
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~---~~~v~~~~  113 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHG---RRAITRSD  113 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETT---TTEEEEEC
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECC---CCEEEEEC
Confidence            3444455667899999998 6778888899999998 444 3444444455778899998875444321   46788998


Q ss_pred             ccCCceEEEeeec-----ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECC
Q 021648           85 LHDNKYLRYFKGH-----HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG  159 (309)
Q Consensus        85 ~~~~~~~~~~~~h-----~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (309)
                      .. ++.. .+..+     ...++.+.+.++|+..+|-..-|+..-++-...       ....               ..+
T Consensus       114 ~~-g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~-------~~~~---------------~~~  169 (305)
T 3dr2_A          114 AD-GQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA-------DPEL---------------AHH  169 (305)
T ss_dssp             TT-SCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC-------CCSS---------------SCE
T ss_pred             CC-CCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccc-------cccc---------------CCC
Confidence            76 5432 22211     134567888888887776211011000000000       0000               001


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC------CcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPVSRNSTLE  233 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~  233 (309)
                      .|..+|....   .+....   .....+.++|+|||+.|..+...      +.|++||...+.+................
T Consensus       170 ~v~~~d~~~g---~~~~~~---~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdg  243 (305)
T 3dr2_A          170 SVYRLPPDGS---PLQRMA---DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDG  243 (305)
T ss_dssp             EEEEECSSSC---CCEEEE---EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCS
T ss_pred             eEEEEcCCCC---cEEEEe---cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCe
Confidence            1222222111   011110   11224678999999977666554      78999998765421111111111233456


Q ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEE-EEccc
Q 021648          234 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF-VTGSS  290 (309)
Q Consensus       234 ~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l-~s~~~  290 (309)
                      +++.++|+.+++. .++ |.+|+. +++.+..+.... .+..++|+|+++.| +++..
T Consensus       244 i~~d~~G~lwv~~-~~g-v~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          244 FCVDRGGWLWSSS-GTG-VCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             EEECTTSCEEECC-SSE-EEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETT
T ss_pred             EEECCCCCEEEec-CCc-EEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC
Confidence            8999999955444 454 999998 567777665544 68999999987644 44443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=1.3e-11  Score=107.54  Aligned_cols=257  Identities=9%  Similarity=0.014  Sum_probs=153.9

Q ss_pred             cceEEEEeCCCCCEEEEee--CCCcEEEEEcCCCceeeeee-------ccccceeEEEEecCCCEEEEEcCCC---CCce
Q 021648           12 GRISSMDFHKSSSYLVTAS--DDESIRLYDVTAATCLKTIN-------SKKYGVDLVCFTSHPTTVIYSSKNG---WDES   79 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s--~D~~v~iWd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~s~~g---~d~~   79 (309)
                      ..+..|+++|+|+++++..  .++.++||.+.+++. ..+.       .+-..+..+++.+++. ++++..+.   .+..
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCCe
Confidence            6788999999999999864  234367777655543 2221       2234577888888865 33332110   1468


Q ss_pred             eEEEEccCCceEEEeeec------ccCEEEEEecCCC-CeEEEec---CCCcEEEeeCCCceeeeeeeec-C-ce-eEEE
Q 021648           80 LRLLSLHDNKYLRYFKGH------HDRVVSLSLCSSK-DCFISGS---LDRTVLLWDQRAEKCQGLLRVQ-G-RP-AAAY  146 (309)
Q Consensus        80 i~~~d~~~~~~~~~~~~h------~~~v~~v~~~~~~-~~l~s~s---~Dg~v~~Wd~~~~~~~~~~~~~-~-~~-~~~~  146 (309)
                      |.+||+++++.++.+...      ...+..+++.+++ ...++-+   .++.|.+||+.+++....+..+ . .. ...+
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            999999998877666532      2356889999764 4456665   6889999999877654433210 0 00 0000


Q ss_pred             CCCCcEEEE-EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC-cEEEEECC---CCeE----
Q 021648          147 DDQGLVFAV-AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVLDSF---RGTL----  217 (309)
Q Consensus       147 ~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg-~v~i~d~~---~~~~----  217 (309)
                      ..++..+.. ..++.++.|.                  ...+.+++||||+.|..+..++ .+..++..   .+..    
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~  236 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPH------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE  236 (343)
T ss_dssp             EETTEECBEECTTSCEECCC------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred             eECCEEEEeccCCCceecee------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence            011211111 1122222221                  1356799999998877776655 56555531   1110    


Q ss_pred             -eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC--CCCCcEEEECCCeeEEEEccc
Q 021648          218 -LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF--DTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       218 -~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~--~~~v~~l~~~p~~~~l~s~~~  290 (309)
                       ...+... ........++++++|+.+++...++.|.+||..+++. ..+...  -..+..++|.|+++++++.+.
T Consensus       237 ~~~~~~~~-g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          237 LGSKIERY-SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             HHTTCEEE-EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred             hhcceEec-ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEEECCceecCCeeEECCCCcEEEEeCc
Confidence             0000000 0112334689999999999999999999999956653 333222  345788999999988877663

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.44  E-value=1.1e-11  Score=108.96  Aligned_cols=174  Identities=16%  Similarity=0.192  Sum_probs=129.4

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc---------eee-eeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAAT---------CLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      .++.+++++...++++|+.| .+++|++....         ... ....... |..++|  ++..++++ .   ++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~---~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-T---RNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-E---SSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-c---CCcEEE
Confidence            58899999999999999998 55679876443         111 1223444 889999  77888777 2   678999


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEE
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR  162 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (309)
                      ||+.+.........|...+.++.+.+.  .++.++.||++.+||+++++....                           
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~---------------------------  161 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL---------------------------  161 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE---------------------------
T ss_pred             EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccc---------------------------
Confidence            999877666677788888888777654  388889999999999876543210                           


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeE--eEEeeecC------CCCCccceE
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVKP------VSRNSTLEA  234 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~------~~~~~~~~~  234 (309)
                                          ...+.++++||+|  ++.+..||++++|+...+..  ..++...+      .+...+.++
T Consensus       162 --------------------~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI  219 (388)
T 1xip_A          162 --------------------AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSV  219 (388)
T ss_dssp             --------------------EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEE
T ss_pred             --------------------cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEE
Confidence                                0246899999999  67899999999999877765  44442111      134678899


Q ss_pred             EECCCCCEEEE
Q 021648          235 SFSPEGMFVIS  245 (309)
Q Consensus       235 ~~sp~g~~l~s  245 (309)
                      .|.++++++++
T Consensus       220 ~wl~~~~flv~  230 (388)
T 1xip_A          220 TILSPQDFLAV  230 (388)
T ss_dssp             EESSSSEEEEE
T ss_pred             EEecCCeEEEE
Confidence            99999999987

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.41  E-value=7.4e-10  Score=95.71  Aligned_cols=224  Identities=14%  Similarity=0.093  Sum_probs=140.7

Q ss_pred             eEEEEeCCCC-CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE
Q 021648           14 ISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR   92 (309)
Q Consensus        14 V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~   92 (309)
                      ..+..|+|++ .++++...++.|..||..+++.. .+.. ...+..+++.+++..++..     +..+.+||..+++...
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~~v~~i~~~~dg~l~v~~-----~~gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIAS-----DDGLFLRDTATGVLTL  123 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEEE-----TTEEEEEETTTCCEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-CCcceEEEEeCCCeEEEEE-----CCCEEEEECCCCcEEE
Confidence            4678899974 56677777899999999877543 2322 3457788899988765544     2349999998877543


Q ss_pred             Eeee---c-ccCEEEEEecCCCCeEEEecCC----CcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEE
Q 021648           93 YFKG---H-HDRVVSLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF  164 (309)
Q Consensus        93 ~~~~---h-~~~v~~v~~~~~~~~l~s~s~D----g~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (309)
                      ....   + ...++++.+.|+|+.+++...+    +...+|.+.+++                             +..+
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-----------------------------~~~~  174 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-----------------------------VTKL  174 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-----------------------------EEEE
T ss_pred             EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-----------------------------EEEe
Confidence            2221   1 2458899999999866654322    112222111111                             1100


Q ss_pred             ECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEE-EEeCCCcEEEEECC--CC-eEe--EEeeecCCCCCccceEEECC
Q 021648          165 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML-LTTMEGHIHVLDSF--RG-TLL--STYNVKPVSRNSTLEASFSP  238 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~-~~~~dg~v~i~d~~--~~-~~~--~~~~~~~~~~~~~~~~~~sp  238 (309)
                      .            .   .....+.++++|||+.+. +...++.|.+||..  ++ ...  ..+............+++.+
T Consensus       175 ~------------~---~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~  239 (326)
T 2ghs_A          175 F------------A---DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA  239 (326)
T ss_dssp             E------------E---EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             e------------C---CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC
Confidence            0            0   001235788999998664 44567899999975  55 321  11211111123345688999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEEC-CCee-EEEEcc
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT-PGSL-MFVTGS  289 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-p~~~-~l~s~~  289 (309)
                      +|+.+++...++.|.+||. +++.+..+......+.+++|+ |+++ ++++..
T Consensus       240 ~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          240 EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence            9998888777789999998 677777776666678999998 8865 444433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.38  E-value=3.6e-11  Score=105.40  Aligned_cols=263  Identities=8%  Similarity=-0.073  Sum_probs=162.7

Q ss_pred             CEEEEeeCCC----cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC-------CCCceeEEEEccCCceEE
Q 021648           24 SYLVTASDDE----SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDNKYLR   92 (309)
Q Consensus        24 ~~l~t~s~D~----~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------g~d~~i~~~d~~~~~~~~   92 (309)
                      ...++-..++    +|-+.|..+++.+.++.....+  .+.++|+++.++.+...       ..++.|.++|+.+++.+.
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~  110 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA  110 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence            3556666566    7889999999999999877666  69999999988877521       126789999999999988


Q ss_pred             Eeeec-------ccCEEEEEecCCCCeEEEecC--CCcEEE--eeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEE
Q 021648           93 YFKGH-------HDRVVSLSLCSSKDCFISGSL--DRTVLL--WDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI  161 (309)
Q Consensus        93 ~~~~h-------~~~v~~v~~~~~~~~l~s~s~--Dg~v~~--Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (309)
                      .+.-.       -.....+.++|||++++.+..  +..+.+  +|..+   ...+...+...........+++.+.++.+
T Consensus       111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~  187 (368)
T 1mda_H          111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSC
T ss_pred             EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCE
Confidence            88643       124568899999998888764  467888  99876   33333322111111122233444456666


Q ss_pred             EEEECCC----CCcCCc---eEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe--EeEEeeecC-------
Q 021648          162 RMFDARK----YEKGPF---DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT--LLSTYNVKP-------  225 (309)
Q Consensus       162 ~~~d~~~----~~~~~~---~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~~-------  225 (309)
                      ...|+..    ...-..   ......  ..+.   . ++++..++..+. +.|.+.|.....  .+..+....       
T Consensus       188 ~~vd~~~~~~~~~~v~~~~t~~i~vg--~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~  260 (368)
T 1mda_H          188 AASDLAAAPAAAGIVGAQCTGAQNCS--SQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADN  260 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBC--SCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTT
T ss_pred             EEEECccccccCCeEEEEeeeeeeCC--CCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccc
Confidence            6666543    000000   001111  1121   3 666766666666 999999986432  222221100       


Q ss_pred             CCCCccceEEECCCCCEEEEEcC---------CCcEEEEECCCCceEEEeecCCCCCcEEEECCCee-EEEEcc-ceEEE
Q 021648          226 VSRNSTLEASFSPEGMFVISGSG---------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGS-SELSF  294 (309)
Q Consensus       226 ~~~~~~~~~~~sp~g~~l~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~~-~d~~~  294 (309)
                      ........++|+|||++++.+..         ++.+.++|+.+.+.+..+.... ....++|+||++ ++++.. .+..+
T Consensus       261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~V  339 (368)
T 1mda_H          261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEE
T ss_pred             cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeE
Confidence            00011112689999988886532         2356699999999888875433 578999999986 556554 34344


Q ss_pred             eeecC
Q 021648          295 WIPDL  299 (309)
Q Consensus       295 ~~~~~  299 (309)
                      -++|+
T Consensus       340 sVID~  344 (368)
T 1mda_H          340 DIYDA  344 (368)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            44443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.36  E-value=2e-11  Score=107.36  Aligned_cols=172  Identities=10%  Similarity=0.064  Sum_probs=122.8

Q ss_pred             CEEEEEecCCCCeEEEecCCCcEEEeeCCCce---------e--eeeeeecCceeEEECCCCcEEEEEECCEEEEEECCC
Q 021648          100 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK---------C--QGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK  168 (309)
Q Consensus       100 ~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  168 (309)
                      .+..+++++....+++|+.|+. ++|+++..+         .  .....++......+  ++.+++++.++.|++||++.
T Consensus        39 ~~nlLais~~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d~~~L~v~~~~~l~v~dv~s  115 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--HGDQVLVSTRNALYSLDLEE  115 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--ETTEEEEEESSEEEEEESSS
T ss_pred             cccEEEEcCCCCEEEEeCCCEE-EEEEhhHhhhhhccccccccceEEeeCCCeeEEEE--CCCEEEEEcCCcEEEEEchh
Confidence            5788999999999999998854 559864332         1  11223344334556  66677777999999999987


Q ss_pred             CCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcC
Q 021648          169 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG  248 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~  248 (309)
                      ..... ....+   ...+..+.+.+.  .+++.+.||.+.+||+..+....       ....+.+++|||+|  ++.|..
T Consensus       116 l~~~~-~~~~~---~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG--~~vg~~  180 (388)
T 1xip_A          116 LSEFR-TVTSF---EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQ--LAVLLK  180 (388)
T ss_dssp             TTCEE-EEEEC---SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSE--EEEEET
T ss_pred             hhccC-cccee---ecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCc--eEEEEc
Confidence            65321 12222   234556555543  38888999999999998776543       12357789999999  678999


Q ss_pred             CCcEEEEECCCCce--EEEe------e---cCCCCCcEEEECCCeeEEEEcc
Q 021648          249 DGSVYAWSVRSGKE--VASW------M---SFDTEPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       249 Dg~i~vwd~~~~~~--~~~~------~---~~~~~v~~l~~~p~~~~l~s~~  289 (309)
                      ||++++|+...++.  .+++      .   +|+..|.+|.|.++++++++-.
T Consensus       181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            99999999977664  4555      2   3677899999999999888743

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.36  E-value=9.1e-09  Score=86.80  Aligned_cols=233  Identities=8%  Similarity=0.108  Sum_probs=154.7

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceee-eeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      +...+.++.++++|++.++...++.|..||.. ++... .+......+..+++.+++...++...   ++.|..+|.. +
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~~~~-g  134 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLN---GDRIGKLTAD-G  134 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETT---TTEEEEECTT-S
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccC---CCeEEEECCC-C
Confidence            34678899999999988888778899999987 55432 22222345677888887765554432   5678899887 5


Q ss_pred             ceEEE-eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec----CceeEEECCCCcEEEEEE-CCEEE
Q 021648           89 KYLRY-FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVAF-GGYIR  162 (309)
Q Consensus        89 ~~~~~-~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~i~  162 (309)
                      +.... +......+.++.+.++++..++...++.|..+|. +++... +...    .......++++.++.+.. .+.|.
T Consensus       135 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  212 (300)
T 2qc5_A          135 TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIG  212 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence            54322 2334567899999999997777777889999997 444332 2211    122345666676666554 56899


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  242 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  242 (309)
                      .||..    +....+........+..++++++|+++++...++.|..||. ++... .+... .....+..+++.|+|+.
T Consensus       213 ~~~~~----g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~-~~~~~~~~i~~~~~g~l  285 (300)
T 2qc5_A          213 RITTT----GEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ-TENAEPHGITFGKDGSV  285 (300)
T ss_dssp             EECTT----CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC-STTCCCCCEEECTTSCE
T ss_pred             EEcCC----CcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC-ccCCccceeEeCCCCCE
Confidence            99872    22222323233455788999999998888777899999998 45443 33322 12345678899999987


Q ss_pred             EEEEcCCCcEEEEECC
Q 021648          243 VISGSGDGSVYAWSVR  258 (309)
Q Consensus       243 l~s~s~Dg~i~vwd~~  258 (309)
                      +++.. . .|..+|..
T Consensus       286 ~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          286 WFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EEECS-S-EEEEEEEC
T ss_pred             EEEcc-C-ceEEeCCC
Confidence            77665 4 67777653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.35  E-value=4.6e-13  Score=118.06  Aligned_cols=205  Identities=17%  Similarity=0.058  Sum_probs=114.6

Q ss_pred             CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccC-
Q 021648           22 SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR-  100 (309)
Q Consensus        22 ~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~-  100 (309)
                      ++.++++++.|+.|..||..+|+.+..+..  ..+....+..++..++.++   .|+.++.||.++|+.+..+..+... 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s---~dg~l~a~d~~tG~~~w~~~~~~~~~   82 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDP---NDGSLYTLGSKNNEGLTKLPFTIPEL   82 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECT---TTCCEEEC-----CCSEECSCCHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeC---CCCEEEEEECCCCceeeeeeccCccc
Confidence            467899999999999999999999887776  3344333444554455433   3889999999998877666544221 


Q ss_pred             EEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeC
Q 021648          101 VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG  180 (309)
Q Consensus       101 v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  180 (309)
                      +.+.....++..+++++.|+.++.||.++++....+....                                        
T Consensus        83 ~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----------------------------------------  122 (369)
T 2hz6_A           83 VQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----------------------------------------  122 (369)
T ss_dssp             HTTCSCC-----CCCCEEEEEEEEECCC----------------------------------------------------
T ss_pred             cccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----------------------------------------
Confidence            1110011134567788889999999988776533221100                                        


Q ss_pred             CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC---CEEEEEcCCCcEEEEEC
Q 021648          181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG---MFVISGSGDGSVYAWSV  257 (309)
Q Consensus       181 ~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g---~~l~s~s~Dg~i~vwd~  257 (309)
                             ...++|++..+++++.|+.|+.||..+|+.+-.+.....     ...++++++   ..++.++.||.++.||.
T Consensus       123 -------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~-----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~  190 (369)
T 2hz6_A          123 -------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY-----AASLPEDDVDYKMSHFVSNGDGLVVTVDS  190 (369)
T ss_dssp             -----------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE-----CCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred             -------cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc-----cCccccCCccccceEEEECCCCEEEEEEC
Confidence                   012345677788888889999999988886644432111     112333432   56777889999999999


Q ss_pred             CCCceEEEeecCCCCC-cEEEECCCeeE
Q 021648          258 RSGKEVASWMSFDTEP-PVIKWTPGSLM  284 (309)
Q Consensus       258 ~~~~~~~~~~~~~~~v-~~l~~~p~~~~  284 (309)
                      .+++.+-.+.. .+++ ...++++++..
T Consensus       191 ~tG~~~W~~~~-~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          191 ESGDVLWIQNY-ASPVVAFYVWQREGLR  217 (369)
T ss_dssp             TTCCEEEEEEC-SSCEEEEEECTTSSCE
T ss_pred             CCCcEEEEecC-CCceEEEEEecCCceE
Confidence            99998776653 3333 33455666653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.29  E-value=2.6e-09  Score=90.86  Aligned_cols=196  Identities=14%  Similarity=0.140  Sum_probs=125.2

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec----cccceeEEEEecCCCEEEEEcCCCC------Cce
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS----KKYGVDLVCFTSHPTTVIYSSKNGW------DES   79 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~s~~g~------d~~   79 (309)
                      +...+.++.++|+|+++++.  +..|.+||.++++.......    ....+..+++.+++...+.......      ...
T Consensus        52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~  129 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ  129 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred             CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence            35678999999999966654  67899999987765332221    1234677889999885443321110      123


Q ss_pred             eEEEEccCCceEEEeeecccCEEEEEecCCCCeE-EEecCCCcEEEeeC--CCceeeeeeeecCceeEEECCCCcEEEEE
Q 021648           80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQ--RAEKCQGLLRVQGRPAAAYDDQGLVFAVA  156 (309)
Q Consensus        80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~Dg~v~~Wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (309)
                      -++|.+.....+..+..+....+.++|+||++.| ++.+.++.|..||+  .++..... +              .    
T Consensus       130 ~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~-~--------------~----  190 (297)
T 3g4e_A          130 GALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR-R--------------S----  190 (297)
T ss_dssp             EEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE-E--------------E----
T ss_pred             cEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc-E--------------E----
Confidence            4566554322233344455667899999999865 56677889999986  33321100 0              0    


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                            +.++..             .......++++++|++.++...++.|..||..+++.+..+..   +...+.+++|
T Consensus       191 ------~~~~~~-------------~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~---p~~~~t~~~f  248 (297)
T 3g4e_A          191 ------VYKLEK-------------EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL---PVDKTTSCCF  248 (297)
T ss_dssp             ------EEECCG-------------GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC---SSSBEEEEEE
T ss_pred             ------EEECCC-------------CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC---CCCCceEEEE
Confidence                  000000             001235678999999988888889999999988998887764   2345778999


Q ss_pred             C-CCCCEEEEEcC
Q 021648          237 S-PEGMFVISGSG  248 (309)
Q Consensus       237 s-p~g~~l~s~s~  248 (309)
                      + ||++.|+.++.
T Consensus       249 ~g~d~~~L~vt~~  261 (297)
T 3g4e_A          249 GGKNYSEMYVTCA  261 (297)
T ss_dssp             ESGGGCEEEEEEB
T ss_pred             eCCCCCEEEEEcC
Confidence            8 88877655543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.29  E-value=1.4e-09  Score=103.29  Aligned_cols=260  Identities=12%  Similarity=0.125  Sum_probs=162.8

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeecc-c----cceeEEEEecCCCEEEEEcCC---CCCceeEEEEccCCceEEEe
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSK-K----YGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRYF   94 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~~~~~s~~---g~d~~i~~~d~~~~~~~~~~   94 (309)
                      +..++.++.|+.|..+|..+|+.+..+... .    ..+...-.. .+..+++++..   +.++.+..+|.++|+.+..+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            567888889999999999999988766542 1    111110001 13345554322   23789999999999998877


Q ss_pred             eecc-------------------------------cCEEEEEecCCCCeEEEecCCCc-------------------EEE
Q 021648           95 KGHH-------------------------------DRVVSLSLCSSKDCFISGSLDRT-------------------VLL  124 (309)
Q Consensus        95 ~~h~-------------------------------~~v~~v~~~~~~~~l~s~s~Dg~-------------------v~~  124 (309)
                      ..-.                               ..-..+.+.|+.+.+..++.++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            5210                               01124677788888888877764                   999


Q ss_pred             eeCCCceeeeeeeecCc---------eeEEE--CCCC----cEEEEEECCEEEEEECCCCCcC--------CceE-EE--
Q 021648          125 WDQRAEKCQGLLRVQGR---------PAAAY--DDQG----LVFAVAFGGYIRMFDARKYEKG--------PFDI-FS--  178 (309)
Q Consensus       125 Wd~~~~~~~~~~~~~~~---------~~~~~--~~~~----~~~~~~~~~~i~~~d~~~~~~~--------~~~~-~~--  178 (309)
                      ||.++++....+.....         .....  ...+    .++....+|.++++|.++.+.-        .... ..  
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~  359 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK  359 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence            99999988766543211         01111  1122    2334445789999997664320        0000 00  


Q ss_pred             -------------e-CCC----------CCCCeEEEEccCCCEEEEEeC-------------------------------
Q 021648          179 -------------V-GGD----------ISDANVVKFSNDGRLMLLTTM-------------------------------  203 (309)
Q Consensus       179 -------------~-~~~----------~~~~~~v~~s~dg~~l~~~~~-------------------------------  203 (309)
                                   . .+.          ...-..++++|+..++.+...                               
T Consensus       360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  439 (689)
T 1yiq_A          360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM  439 (689)
T ss_dssp             TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred             CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence                         0 000          001123688888777766522                               


Q ss_pred             --------------CCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC
Q 021648          204 --------------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF  269 (309)
Q Consensus       204 --------------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~  269 (309)
                                    +|.++.||+.+++.+-.+...    .....-.++..|..++.|+.||.++.||.++++.+.++...
T Consensus       440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV----TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CcccccCCCCCCCcceeEEEEECCCCCeEeEccCC----CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence                          377999999999987665432    12233356678889999999999999999999999887644


Q ss_pred             CC-CCcEEEECCCeeEEEE
Q 021648          270 DT-EPPVIKWTPGSLMFVT  287 (309)
Q Consensus       270 ~~-~v~~l~~~p~~~~l~s  287 (309)
                      .+ ...-+.|..+|++.+.
T Consensus       516 ~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          516 SGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             SCCCSCCEEEEETTEEEEE
T ss_pred             CCcccCceEEEECCEEEEE
Confidence            33 2344778888875544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.29  E-value=2.7e-09  Score=90.94  Aligned_cols=205  Identities=11%  Similarity=0.171  Sum_probs=131.5

Q ss_pred             CCcceEEEEeCCC-CCEEEEeeCCCcEEEEEcCCCceeee-eec----cccceeEEEEecCCCEEEEEcCCC--------
Q 021648           10 YNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKT-INS----KKYGVDLVCFTSHPTTVIYSSKNG--------   75 (309)
Q Consensus        10 h~~~V~~i~~s~~-~~~l~t~s~D~~v~iWd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~~~s~~g--------   75 (309)
                      +...+.++.++++ |+++++.. +..|.+||.+ ++.... ...    ....+..+++.+++...++....+        
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            5567889999999 76665554 4478999988 665433 221    112467889988887555443210        


Q ss_pred             ----CCceeEEEEccCCceEEEeeecccCEEEEEec----CCCCeE-EEecCCCcEEEeeCC-CceeeeeeeecCceeEE
Q 021648           76 ----WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLC----SSKDCF-ISGSLDRTVLLWDQR-AEKCQGLLRVQGRPAAA  145 (309)
Q Consensus        76 ----~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~----~~~~~l-~s~s~Dg~v~~Wd~~-~~~~~~~~~~~~~~~~~  145 (309)
                          ..+.+..+|.. ++.. .+..+......++++    ++++.+ ++...++.|.+||++ +++....          
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~----------  214 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK----------  214 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE----------
T ss_pred             cccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc----------
Confidence                01456666665 4433 333445567889999    998654 555678899999864 2221000          


Q ss_pred             ECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCC-CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeec
Q 021648          146 YDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI-SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  224 (309)
Q Consensus       146 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  224 (309)
                                      .++.            ...... .....++++++|+++++...++.|.+||..+++.+..+.. 
T Consensus       215 ----------------~~~~------------~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~-  265 (314)
T 1pjx_A          215 ----------------KVWG------------HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC-  265 (314)
T ss_dssp             ----------------EEEE------------ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC-
T ss_pred             ----------------eEEE------------ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC-
Confidence                            0000            000010 1235688999999999888899999999887776665543 


Q ss_pred             CCCCCccceEEECCCCCEE-EEEcCCCcEEEEECCC
Q 021648          225 PVSRNSTLEASFSPEGMFV-ISGSGDGSVYAWSVRS  259 (309)
Q Consensus       225 ~~~~~~~~~~~~sp~g~~l-~s~s~Dg~i~vwd~~~  259 (309)
                        +...+..++|+|+|++| ++...++.|..|++..
T Consensus       266 --~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          266 --PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             --SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             --CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence              23556789999999955 4556678999999864

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.24  E-value=2.4e-09  Score=101.57  Aligned_cols=259  Identities=10%  Similarity=0.065  Sum_probs=165.0

Q ss_pred             CCCEEEEeeCCCcEEEEEcCCCceeeeeecc-c----cceeEEEEecCCCEEEEEcCC---CCCceeEEEEccCCceEEE
Q 021648           22 SSSYLVTASDDESIRLYDVTAATCLKTINSK-K----YGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRY   93 (309)
Q Consensus        22 ~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~~~~~s~~---g~d~~i~~~d~~~~~~~~~   93 (309)
                      ++..+..++.|+.|..+|..+|+.+..+... .    ..+...-. ..+..+++++..   +.++.|+.+|.++|+.+..
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~-v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPR-VFKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCE-EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcE-EECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            3567888889999999999999998777654 2    11111001 123455555432   1368999999999999887


Q ss_pred             eeecccC--------------------------------EEEEEecCCCCeEEEecCCC-------------------cE
Q 021648           94 FKGHHDR--------------------------------VVSLSLCSSKDCFISGSLDR-------------------TV  122 (309)
Q Consensus        94 ~~~h~~~--------------------------------v~~v~~~~~~~~l~s~s~Dg-------------------~v  122 (309)
                      +......                                ...+.+.++++.+..++.++                   +|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv  285 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI  285 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence            7543211                                12456778888887776654                   59


Q ss_pred             EEeeCCCceeeeeeeecCc----------eeEE-ECCCC----cEEEEEECCEEEEEECCCCCcCCceEEEeCC------
Q 021648          123 LLWDQRAEKCQGLLRVQGR----------PAAA-YDDQG----LVFAVAFGGYIRMFDARKYEKGPFDIFSVGG------  181 (309)
Q Consensus       123 ~~Wd~~~~~~~~~~~~~~~----------~~~~-~~~~~----~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------  181 (309)
                      ..+|.++++....+.....          +... ...++    .++....+|.++++|.++.+.-  -......      
T Consensus       286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l--~~~~~~~~~~~~~  363 (677)
T 1kb0_A          286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI--SAKNFVPVNWASG  363 (677)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE--EEEESSCCSSEEE
T ss_pred             EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEe--ccccccccCcccc
Confidence            9999999988766543211          1111 11122    2444445789999997764320  0000000      


Q ss_pred             -----------------CC----------CCCeEEEEccCCCEEEEEeC-------------------------------
Q 021648          182 -----------------DI----------SDANVVKFSNDGRLMLLTTM-------------------------------  203 (309)
Q Consensus       182 -----------------~~----------~~~~~v~~s~dg~~l~~~~~-------------------------------  203 (309)
                                       ..          ..-..++++|+..++.+...                               
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence                             00          01124688998887766543                               


Q ss_pred             ------------CCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCC-
Q 021648          204 ------------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD-  270 (309)
Q Consensus       204 ------------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~-  270 (309)
                                  .|.|..||+.+++.+-.+...    ...+...+++++..++.++.||.+++||..+++.+.++.... 
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~  519 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG  519 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cccccccCCCCCccEEEEEeCCCCcEEeecCCC----CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence                        278999999999987665432    223445577788899999999999999999999998876433 


Q ss_pred             CCCcEEEECCCeeEEEE
Q 021648          271 TEPPVIKWTPGSLMFVT  287 (309)
Q Consensus       271 ~~v~~l~~~p~~~~l~s  287 (309)
                      ...+-+.|.++|++++.
T Consensus       520 ~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          520 VVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             CCSCCEEEEETTEEEEE
T ss_pred             cccCCEEEEeCCEEEEE
Confidence            33344677788765543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.23  E-value=1.7e-09  Score=102.97  Aligned_cols=233  Identities=12%  Similarity=0.119  Sum_probs=140.3

Q ss_pred             ccceeEEEEecCCCEEEEEcCC-CC-CceeEEEEccCCceEEEeeecccCE--EEEEecCCCCeEEEecCCCc-------
Q 021648           53 KYGVDLVCFTSHPTTVIYSSKN-GW-DESLRLLSLHDNKYLRYFKGHHDRV--VSLSLCSSKDCFISGSLDRT-------  121 (309)
Q Consensus        53 ~~~v~~~~~~~~~~~~~~~s~~-g~-d~~i~~~d~~~~~~~~~~~~h~~~v--~~v~~~~~~~~l~s~s~Dg~-------  121 (309)
                      ...+..++|+|+++.++++... |. ..+|+++|+++++.+..   +...+  ..++|+ |++.|+.++.|..       
T Consensus       128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET---PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc---ccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            3457778999999998876532 22 37899999999986543   22222  567899 9999888887754       


Q ss_pred             ------EEEeeCCCceeee--eeeecC-----ceeEEECCCCcEEEEEE-----CCEEEEEECCCCCcCCceEEEeCCCC
Q 021648          122 ------VLLWDQRAEKCQG--LLRVQG-----RPAAAYDDQGLVFAVAF-----GGYIRMFDARKYEKGPFDIFSVGGDI  183 (309)
Q Consensus       122 ------v~~Wd~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~  183 (309)
                            |++|++.++....  ......     .....+++++..+....     .+.|.++|+..... ...  .+....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~-~~~--~l~~~~  280 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA-PLL--TVQGDL  280 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-CCE--EEECSS
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-ceE--EEeCCC
Confidence                  9999987654321  111111     23456678877554432     25899999865321 122  222222


Q ss_pred             CCCeEEEEccCCCEEEEEeC----CCcEEEEECCCCeE--eEEeeecCCCCCccceEEECCCCCEEEEEcCCC---cEEE
Q 021648          184 SDANVVKFSNDGRLMLLTTM----EGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYA  254 (309)
Q Consensus       184 ~~~~~v~~s~dg~~l~~~~~----dg~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg---~i~v  254 (309)
                      ...... ++++|..++..+.    .+.|..+|+.++..  ...+..   +...+.  .|+|++++|+....++   .|++
T Consensus       281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~  354 (693)
T 3iuj_A          281 DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP---ERQQVL--TVHSGSGYLFAEYMVDATARVEQ  354 (693)
T ss_dssp             SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---CCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred             CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec---CCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence            333333 6777766554443    36799999877643  223322   122233  8999999888776655   7899


Q ss_pred             EECCCCceEEEee-cCCCCCcEEEECCCeeEEE-Eccce---EEEeeecC
Q 021648          255 WSVRSGKEVASWM-SFDTEPPVIKWTPGSLMFV-TGSSE---LSFWIPDL  299 (309)
Q Consensus       255 wd~~~~~~~~~~~-~~~~~v~~l~~~p~~~~l~-s~~~d---~~~~~~~~  299 (309)
                      ||+..+ ....+. ...+.+..+.++|++..+. +.++.   ..+|..++
T Consensus       355 ~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          355 FDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             ECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             EECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            999754 333332 2334456677788876443 33321   44555544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.22  E-value=5.1e-10  Score=97.38  Aligned_cols=230  Identities=10%  Similarity=0.011  Sum_probs=145.9

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeC-----CCcEEEEEcCCCceeeeeeccc------cceeEEEEecCCCEEEEEcC-CCC
Q 021648            9 DYNGRISSMDFHKSSSYLVTASD-----DESIRLYDVTAATCLKTINSKK------YGVDLVCFTSHPTTVIYSSK-NGW   76 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~-----D~~v~iWd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~s~-~g~   76 (309)
                      +|-..+..|++++++++.++-..     +..|.+||+.+++.++.+....      .....+++.+++..++.+.. .+.
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            35568999999999987765543     6899999999998777665321      23567888876555555432 113


Q ss_pred             CceeEEEEccCCceEEEeeecccCEE-EEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEE
Q 021648           77 DESLRLLSLHDNKYLRYFKGHHDRVV-SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  155 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h~~~v~-~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (309)
                      ++.|.+||+.+++..+.+.+|..... ...+.+++..+.+.+.|++++.|..            .....++++++..+..
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~------------~~~gia~s~dg~~ly~  211 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL------------GVNGIVLDAENEWLYL  211 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC------------CEEEEEECTTSCEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceec------------ccceeEeccCCCEEEE
Confidence            67999999998887777766533211 1344557777777788888877742            1123566666654444


Q ss_pred             E-EC-CEEEEEECCCCCcC---------CceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeec
Q 021648          156 A-FG-GYIRMFDARKYEKG---------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  224 (309)
Q Consensus       156 ~-~~-~~i~~~d~~~~~~~---------~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  224 (309)
                      + .. ..+..++......+         .+...   ++......++++++|.++++...++.|.+||..+++....... 
T Consensus       212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-  287 (343)
T 2qe8_A          212 SPMHSTSMYRIKSADLSNLQLTDAELGSKIERY---SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-  287 (343)
T ss_dssp             EESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE---EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-
T ss_pred             EeCCCCeEEEEEHHHhcCCCCChhhhhcceEec---ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-
Confidence            3 33 35555543211110         01111   1112345689999999999999999999999856764433221 


Q ss_pred             CCCCCccceEEECCCCCEEEEEcCCCcEEEE
Q 021648          225 PVSRNSTLEASFSPEGMFVISGSGDGSVYAW  255 (309)
Q Consensus       225 ~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vw  255 (309)
                      + ....+..++|.|+|+.+++.+..+.+.+|
T Consensus       288 ~-~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          288 E-KLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             G-GGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             C-ceecCCeeEECCCCcEEEEeCcccccccc
Confidence            1 12345689999999888888765544333

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.19  E-value=3.6e-09  Score=88.05  Aligned_cols=213  Identities=9%  Similarity=0.040  Sum_probs=142.7

Q ss_pred             ccceEecCCCcc--eEEEEeCCCCCEEEEeeC--CCcEEEEEcCCCceeeeeecccc-ceeEEEEecCCCEEEEEcCCCC
Q 021648            2 EVGMSFRDYNGR--ISSMDFHKSSSYLVTASD--DESIRLYDVTAATCLKTINSKKY-GVDLVCFTSHPTTVIYSSKNGW   76 (309)
Q Consensus         2 ~~~~~~~~h~~~--V~~i~~s~~~~~l~t~s~--D~~v~iWd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~s~~g~   76 (309)
                      +++.++. |...  ...+.|+|++.+.++.+.  +++|++.|+.+++.++.+..... ....+++  +++.++.+..  .
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~--~   84 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVVW--L   84 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEET--T
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEEe--c
Confidence            4556663 4443  579999998877776664  68999999999999888753221 1223444  4566666542  4


Q ss_pred             CceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEE
Q 021648           77 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA  156 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (309)
                      ++.+.++|.++.+.+..+.--...  ...+++|++.++.+..++.+.+.|.++.+....+.+...               
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~---------------  147 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN---------------  147 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET---------------
T ss_pred             CCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC---------------
Confidence            789999999999888887522122  233566877776666788999999888765544432110               


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCC---------
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS---------  227 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~---------  227 (309)
                        +.                     .....+.+.+. +|+.++....++.|.+.|+.+++.+..+......         
T Consensus       148 --~~---------------------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~  203 (266)
T 2iwa_A          148 --GH---------------------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFR  203 (266)
T ss_dssp             --TE---------------------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCT
T ss_pred             --Cc---------------------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccccc
Confidence              00                     00113455566 7777777777889999999999999887653110         


Q ss_pred             -CCccceEEECCCCC-EEEEEcCCCcEEEEECCCC
Q 021648          228 -RNSTLEASFSPEGM-FVISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       228 -~~~~~~~~~sp~g~-~l~s~s~Dg~i~vwd~~~~  260 (309)
                       ......++|+|+++ .++|+...+.+++.++...
T Consensus       204 ~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          204 DIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             ccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence             01335799999975 6666777888999888654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.19  E-value=6.3e-09  Score=98.70  Aligned_cols=268  Identities=14%  Similarity=0.093  Sum_probs=161.2

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeeccccc-----------eeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYG-----------VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL   91 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~   91 (309)
                      +..+..++.++.|.-+|..+|+.+..+......           ...+++  ++..+++++.   |+.+..+|.++|+.+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~---dg~l~alD~~tG~~~  151 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW---DGRLIALDAATGKEV  151 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT---TSEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC---CCEEEEEECCCCCEE
Confidence            456667777899999999999998776543210           011222  3456666543   789999999999999


Q ss_pred             EEeeec-c----cCEEEEEecCCCCeEEEecC------CCcEEEeeCCCceeeeeeeecCc-------------------
Q 021648           92 RYFKGH-H----DRVVSLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLLRVQGR-------------------  141 (309)
Q Consensus        92 ~~~~~h-~----~~v~~v~~~~~~~~l~s~s~------Dg~v~~Wd~~~~~~~~~~~~~~~-------------------  141 (309)
                      ..+..+ .    ..+.+.-...++ .++.++.      |+.|+.+|.++++....+.....                   
T Consensus       152 W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~  230 (677)
T 1kb0_A          152 WHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD  230 (677)
T ss_dssp             EEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred             eeecCCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence            888765 2    112211111233 4444443      79999999999987655432110                   


Q ss_pred             ---------------eeEEECCCCcEEEEEE-CC-------------------EEEEEECCCCCcCCceEEEeCCC----
Q 021648          142 ---------------PAAAYDDQGLVFAVAF-GG-------------------YIRMFDARKYEKGPFDIFSVGGD----  182 (309)
Q Consensus       142 ---------------~~~~~~~~~~~~~~~~-~~-------------------~i~~~d~~~~~~~~~~~~~~~~~----  182 (309)
                                     ....+++...++..+. ++                   .|..+|.++.+.. . .+....+    
T Consensus       231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~-W-~~~~~~~d~wd  308 (677)
T 1kb0_A          231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK-W-HYQETPGDNWD  308 (677)
T ss_dssp             GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE-E-EEESSTTCCSC
T ss_pred             ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEE-E-EEecCCCcccc
Confidence                           1234554444443332 21                   4888887654321 0 1111111    


Q ss_pred             ---CCCCeEEEEccCC---CEEEEEeCCCcEEEEECCCCeEeEEeeecCCC--------CC-------------------
Q 021648          183 ---ISDANVVKFSNDG---RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS--------RN-------------------  229 (309)
Q Consensus       183 ---~~~~~~v~~s~dg---~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~--------~~-------------------  229 (309)
                         ......+....+|   ..++.++.+|.++++|..+|+++-.....+..        ..                   
T Consensus       309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~  388 (677)
T 1kb0_A          309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG  388 (677)
T ss_dssp             CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred             cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence               1223334455588   67888999999999999999998765432110        00                   


Q ss_pred             ----cc-ceEEECCCCCEEEEEcC-------------------------------------------CCcEEEEECCCCc
Q 021648          230 ----ST-LEASFSPEGMFVISGSG-------------------------------------------DGSVYAWSVRSGK  261 (309)
Q Consensus       230 ----~~-~~~~~sp~g~~l~s~s~-------------------------------------------Dg~i~vwd~~~~~  261 (309)
                          .. ..++|+|+++.+++...                                           .|.|+.||+.+++
T Consensus       389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~  468 (677)
T 1kb0_A          389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK  468 (677)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred             cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence                00 14689999888877643                                           2789999999999


Q ss_pred             eEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          262 EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       262 ~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      .+-.... ...+....+..++.++..++.|.+++.+++
T Consensus       469 ~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~  505 (677)
T 1kb0_A          469 AAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHA  505 (677)
T ss_dssp             EEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             EEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence            8777653 333444445555555555666655555544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.17  E-value=5.3e-09  Score=89.31  Aligned_cols=204  Identities=16%  Similarity=0.166  Sum_probs=131.1

Q ss_pred             eEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeeec--CceeEEECCCCcEEEEEEC-CEEEEEE
Q 021648           90 YLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQGLVFAVAFG-GYIRMFD  165 (309)
Q Consensus        90 ~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~i~~~d  165 (309)
                      .+..+........+..|+++++ .+++...++.|..|+. +++. ..+...  ......+++++.++.+... +.|..|+
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence            3444555556678899999988 6778888999999997 4432 222222  2234567778887776654 7899998


Q ss_pred             CCCCCcCCceEEE--eCC-CCCCCeEEEEccCCCEEEE----EeC-------------CCcEEEEECCCCeEeEEeeecC
Q 021648          166 ARKYEKGPFDIFS--VGG-DISDANVVKFSNDGRLMLL----TTM-------------EGHIHVLDSFRGTLLSTYNVKP  225 (309)
Q Consensus       166 ~~~~~~~~~~~~~--~~~-~~~~~~~v~~s~dg~~l~~----~~~-------------dg~v~i~d~~~~~~~~~~~~~~  225 (309)
                      ..    +.+..+.  ..+ ....++.++++|+|+++++    +..             .+.|+.+|..+++......   
T Consensus       114 ~~----g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~---  186 (305)
T 3dr2_A          114 AD----GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMAD---  186 (305)
T ss_dssp             TT----SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEE---
T ss_pred             CC----CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEec---
Confidence            64    1222221  111 1234567899999998886    332             3568888876665443221   


Q ss_pred             CCCCccceEEECCCCCEEEEEcCC------CcEEEEECCCCceEEE---ee-cCCCCCcEEEECCCeeEEEEccceEEEe
Q 021648          226 VSRNSTLEASFSPEGMFVISGSGD------GSVYAWSVRSGKEVAS---WM-SFDTEPPVIKWTPGSLMFVTGSSELSFW  295 (309)
Q Consensus       226 ~~~~~~~~~~~sp~g~~l~s~s~D------g~i~vwd~~~~~~~~~---~~-~~~~~v~~l~~~p~~~~l~s~~~d~~~~  295 (309)
                        ......++|+|||+.|+.+...      +.|++|++.... +..   +. .....+..+++.++|++.++....+..|
T Consensus       187 --~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv~~~  263 (305)
T 3dr2_A          187 --LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCVF  263 (305)
T ss_dssp             --ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECCSSEEEEE
T ss_pred             --CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEecCCcEEEE
Confidence              1233468999999988877665      789999987643 221   11 1234566799999999777765557777


Q ss_pred             eecCCCcccc
Q 021648          296 IPDLSKLGAY  305 (309)
Q Consensus       296 ~~~~~~~~~~  305 (309)
                      .++...++.+
T Consensus       264 ~~~g~~~~~~  273 (305)
T 3dr2_A          264 DSDGQLLGHI  273 (305)
T ss_dssp             CTTSCEEEEE
T ss_pred             CCCCCEEEEE
Confidence            7766554443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.16  E-value=1.8e-08  Score=86.46  Aligned_cols=259  Identities=13%  Similarity=0.111  Sum_probs=156.1

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   90 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~   90 (309)
                      ...+.++...+++.+.+ ++.+  +..+|. +++.+..+..........++.  ...++.++.   ++.+..+|.. ++.
T Consensus        59 ~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~---~~~l~~~d~~-g~~  128 (330)
T 3hxj_A           59 EIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSM---DGHLYAINTD-GTE  128 (330)
T ss_dssp             GEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECT---TSEEEEECTT-SCE
T ss_pred             CCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEec---CCEEEEEcCC-CCE
Confidence            34456777777775544 4444  888886 676665554433222223333  445555543   6789999988 777


Q ss_pred             EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEEECCEEEEEECCC
Q 021648           91 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAFGGYIRMFDARK  168 (309)
Q Consensus        91 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~d~~~  168 (309)
                      +..+..+...+.++...++++ +..++.++.+..+|.. ++.........  ........++.++.+.  +.+..+| .+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~  203 (330)
T 3hxj_A          129 KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PD  203 (330)
T ss_dssp             EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TT
T ss_pred             EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CC
Confidence            776665555566666666665 5667778999999987 65544433322  1223444566666555  7788888 33


Q ss_pred             CCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcC
Q 021648          169 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG  248 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~  248 (309)
                      .+    ...........+.++..+++|.+.+ ++.++.+..+|. ++..+..+...   ......+.+.++| .|..++.
T Consensus       204 g~----~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~-~g~~~~~~~~~---~~~~~~~~~~~~g-~l~v~t~  273 (330)
T 3hxj_A          204 GT----EKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINP-DGTEKWRFKTG---KRIESSPVIGNTD-TIYFGSY  273 (330)
T ss_dssp             SC----EEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECT-TSCEEEEEECS---SCCCSCCEECTTS-CEEEECT
T ss_pred             Cc----EEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECC-CCCEeEEeeCC---CCccccceEcCCC-eEEEecC
Confidence            21    1222222234566778888887554 556788888874 55655544422   1222334555555 5667778


Q ss_pred             CCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce-EEEe
Q 021648          249 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE-LSFW  295 (309)
Q Consensus       249 Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d-~~~~  295 (309)
                      +|.++.+|. +++.+..+......+.++...+++++.+.+... +.+.
T Consensus       274 ~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~  320 (330)
T 3hxj_A          274 DGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYAL  320 (330)
T ss_dssp             TCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred             CCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEE
Confidence            888999996 677766665445567788888888877755544 4433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.16  E-value=6.1e-07  Score=79.86  Aligned_cols=195  Identities=8%  Similarity=0.001  Sum_probs=123.2

Q ss_pred             ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEE-ECC--EEEEEECCCCCcCCc
Q 021648           98 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA-FGG--YIRMFDARKYEKGPF  174 (309)
Q Consensus        98 ~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~i~~~d~~~~~~~~~  174 (309)
                      -.....+++.++++.+++...++.|+.||+.+++..........+...+.+++..+..+ .++  .|..++......  .
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~--~  207 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWA--P  207 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTC--E
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCce--e
Confidence            34688999999999888888889999999987766544333222235666666544444 433  788888653221  1


Q ss_pred             eEE-Ee-CCCCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEeEEeee--cCCCCCcc-c-eEEECCC-CCEEEEE
Q 021648          175 DIF-SV-GGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNV--KPVSRNST-L-EASFSPE-GMFVISG  246 (309)
Q Consensus       175 ~~~-~~-~~~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~~~~~-~-~~~~sp~-g~~l~s~  246 (309)
                      ... .. .........++++| +|.+++ ...++.|+.||..++... .+..  ........ . .++|+|+ ++.+++-
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence            111 11 11234567889999 565555 666889999998876532 2210  10111111 3 7999995 6666777


Q ss_pred             cCCCcEEEEECCCCceEEEeecCC---------------CCCcEEEECCCeeEEEEcc-ceEEEeeec
Q 021648          247 SGDGSVYAWSVRSGKEVASWMSFD---------------TEPPVIKWTPGSLMFVTGS-SELSFWIPD  298 (309)
Q Consensus       247 s~Dg~i~vwd~~~~~~~~~~~~~~---------------~~v~~l~~~p~~~~l~s~~-~d~~~~~~~  298 (309)
                      ...+.|+.|+....  +..+.++.               ..+..++++|+++++++-. ...+++.++
T Consensus       286 ~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~  351 (409)
T 3hrp_A          286 QNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD  351 (409)
T ss_dssp             TTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred             CCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence            78899999998643  33343332               2367799999999888866 554444443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.15  E-value=1.4e-07  Score=82.66  Aligned_cols=227  Identities=14%  Similarity=0.102  Sum_probs=141.6

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCE-
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV-  101 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v-  101 (309)
                      +..+..++.|+.|..+|..+|+.+...............  .+..++.++.   ++.+..+|.++|+.+..+....... 
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~---~g~l~~~d~~tG~~~W~~~~~~~~~~  177 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTS---NGQLQALNEADGAVKWTVNLDMPSLS  177 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECT---TSEEEEEETTTCCEEEEEECCC----
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcC---CCeEEEEECCCCcEEEEEeCCCCcee
Confidence            457777888999999999999987665543221111122  2345555543   6789999999999887776432211 


Q ss_pred             ----EEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce------------eEEECCCCcEEEEEECCEEEEEE
Q 021648          102 ----VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP------------AAAYDDQGLVFAVAFGGYIRMFD  165 (309)
Q Consensus       102 ----~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~i~~~d  165 (309)
                          .....  .+..++.++.++.+..+|.++++...........            .......+.++.++.++.+..+|
T Consensus       178 ~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d  255 (376)
T 3q7m_A          178 LRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD  255 (376)
T ss_dssp             -CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred             ecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence                11111  2456778888999999999988776554332100            00011235566666678899999


Q ss_pred             CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEE
Q 021648          166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  245 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s  245 (309)
                      .++.+.    .....  ........  .++..+..++.++.+..+|..+++.+-.....  ..........  .+..|+.
T Consensus       256 ~~tG~~----~w~~~--~~~~~~~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~--~~~~l~v  323 (376)
T 3q7m_A          256 LRSGQI----MWKRE--LGSVNDFI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDL--LHRLLTSPVL--YNGNLVV  323 (376)
T ss_dssp             TTTCCE----EEEEC--CCCEEEEE--EETTEEEEEETTCCEEEEETTTCCEEEEECTT--TTSCCCCCEE--ETTEEEE
T ss_pred             CCCCcE----Eeecc--CCCCCCce--EECCEEEEEcCCCeEEEEECCCCcEEEeeccc--CCCcccCCEE--ECCEEEE
Confidence            865431    12221  11222222  34666777888999999999999877554311  1111111222  3578889


Q ss_pred             EcCCCcEEEEECCCCceEEEeec
Q 021648          246 GSGDGSVYAWSVRSGKEVASWMS  268 (309)
Q Consensus       246 ~s~Dg~i~vwd~~~~~~~~~~~~  268 (309)
                      ++.+|.++++|..+++.+.....
T Consensus       324 ~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          324 GDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EeCCCeEEEEECCCCcEEEEEec
Confidence            99999999999999998877654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.15  E-value=1.2e-07  Score=84.16  Aligned_cols=222  Identities=11%  Similarity=0.096  Sum_probs=138.9

Q ss_pred             cCCCEEEEEcCCCCCceeEEEEccCC----ceEEEee------ec-ccCEEEEEecCCCCeEEEecCC------CcEEEe
Q 021648           63 SHPTTVIYSSKNGWDESLRLLSLHDN----KYLRYFK------GH-HDRVVSLSLCSSKDCFISGSLD------RTVLLW  125 (309)
Q Consensus        63 ~~~~~~~~~s~~g~d~~i~~~d~~~~----~~~~~~~------~h-~~~v~~v~~~~~~~~l~s~s~D------g~v~~W  125 (309)
                      .+.++++.....  +..|.++|+.+.    +.++++.      .. ...-..+...|++ .++++..+      +.+.+.
T Consensus        93 ~~r~~l~v~~l~--s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLR--SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTT--TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCC--CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEE
Confidence            566677766543  789999999765    5556652      11 1245667788999 88877666      789999


Q ss_pred             eCCCceeeeeeeecCce-----eEEECCCCcEEEEEE--------------------CCEEEEEECCCCCcCCceEEEeC
Q 021648          126 DQRAEKCQGLLRVQGRP-----AAAYDDQGLVFAVAF--------------------GGYIRMFDARKYEKGPFDIFSVG  180 (309)
Q Consensus       126 d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--------------------~~~i~~~d~~~~~~~~~~~~~~~  180 (309)
                      |.++.+.+..+.....+     ..-+++.+.++.++.                    ++.|.+||+...+  ....+.++
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg  247 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLG  247 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESC
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecC
Confidence            99988888777543221     134466666555553                    6899999987532  12222332


Q ss_pred             CCCCCCeEEEE--ccCCCEEEEEe------CCCcEEEEECCCCeEeE--EeeecCC---------C------CCccceEE
Q 021648          181 GDISDANVVKF--SNDGRLMLLTT------MEGHIHVLDSFRGTLLS--TYNVKPV---------S------RNSTLEAS  235 (309)
Q Consensus       181 ~~~~~~~~v~~--s~dg~~l~~~~------~dg~v~i~d~~~~~~~~--~~~~~~~---------~------~~~~~~~~  235 (309)
                      ........+.|  +|+|+++..+.      .+++|.+|....+....  .+.....         .      ......+.
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence            11112234445  99998776655      56788776654443221  1111110         0      13456789


Q ss_pred             ECCCCCEEEEEcC-CCcEEEEECCC---CceEEEeecCC--------------CCCcEEEECCCeeEEEEcc
Q 021648          236 FSPEGMFVISGSG-DGSVYAWSVRS---GKEVASWMSFD--------------TEPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       236 ~sp~g~~l~s~s~-Dg~i~vwd~~~---~~~~~~~~~~~--------------~~v~~l~~~p~~~~l~s~~  289 (309)
                      +||||++|+.+.. .+.|.++|+..   .+.+..+..-.              +....++++|||+.|..+.
T Consensus       328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999999988744 67999999863   23444443211              1367899999998776655

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.14  E-value=5e-08  Score=85.60  Aligned_cols=229  Identities=9%  Similarity=0.027  Sum_probs=139.5

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeeccc---------cceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKK---------YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY   93 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~   93 (309)
                      +..+..++.++.|..+|..+|+.+.......         ..+. .....++..++.++.   ++.+..+|.++|+.+..
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~~~---~g~l~a~d~~tG~~~W~  128 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLS-GGVTVSGGHVYIGSE---KAQVYALNTSDGTVAWQ  128 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEE-EEEEEETTEEEEEET---TSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccc-cCceEeCCEEEEEcC---CCEEEEEECCCCCEEEE
Confidence            5677788889999999999999876655421         1121 122224456666543   67899999999998877


Q ss_pred             eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc-------eeEEECCCCcEEEEEECCEEEEEEC
Q 021648           94 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------PAAAYDDQGLVFAVAFGGYIRMFDA  166 (309)
Q Consensus        94 ~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~d~  166 (309)
                      +............  .+..++.++.++.+..+|.++++..........       ..... ..+.++.+..++.+..+|.
T Consensus       129 ~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~v~~g~~~g~l~~~d~  205 (376)
T 3q7m_A          129 TKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT-AFGAAVVGGDNGRVSAVLM  205 (376)
T ss_dssp             EECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE-ETTEEEECCTTTEEEEEET
T ss_pred             EeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE-ECCEEEEEcCCCEEEEEEC
Confidence            6644322111112  234777788899999999998887655543221       11111 1345555556788999997


Q ss_pred             CCCCcCCceEEEeCCCCC-----CCeEEEEcc--CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          167 RKYEKGPFDIFSVGGDIS-----DANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~-----~~~~v~~s~--dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      .+.+..  -.........     .+..+..+|  .+..+..++.++.+..+|..+++.+-.....     ......  .+
T Consensus       206 ~tG~~~--w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-----~~~~~~--~~  276 (376)
T 3q7m_A          206 EQGQMI--WQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-----SVNDFI--VD  276 (376)
T ss_dssp             TTCCEE--EEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-----CEEEEE--EE
T ss_pred             CCCcEE--EEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-----CCCCce--EE
Confidence            654320  0111110000     000000111  2455667778999999999999877554321     111222  35


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEee
Q 021648          240 GMFVISGSGDGSVYAWSVRSGKEVASWM  267 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~~~~~~~~~~  267 (309)
                      +..++.++.++.++.+|..+++.+-...
T Consensus       277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          277 GNRIYLVDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             TTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence            7788888899999999999998876654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.12  E-value=1.4e-08  Score=83.70  Aligned_cols=200  Identities=11%  Similarity=0.104  Sum_probs=132.1

Q ss_pred             ccceEecCCCcc--eEEEEeCCCCCEEEEeeCCC--cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCC
Q 021648            2 EVGMSFRDYNGR--ISSMDFHKSSSYLVTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD   77 (309)
Q Consensus         2 ~~~~~~~~h~~~--V~~i~~s~~~~~l~t~s~D~--~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d   77 (309)
                      |+++++. |...  ...+.|+ ++.+..+.+.++  +|+++|+.+|+.++.+..... .....+.++++.++...  ..+
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~lt--w~~  106 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLT--WKN  106 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEE--SSS
T ss_pred             EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEE--eeC
Confidence            5566663 4544  3689998 677888888877  999999999999888765432 22222333456666553  347


Q ss_pred             ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEE
Q 021648           78 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF  157 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (309)
                      +.+.++|.++.+.+..+.--. .-+.+  ++|++.|+.+..++.|.++|.++.+....+.+..                 
T Consensus       107 ~~v~v~D~~t~~~~~ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-----------------  166 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-----------------  166 (262)
T ss_dssp             SEEEEEETTTCCEEEEEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-----------------
T ss_pred             CEEEEEECccCcEEEEEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-----------------
Confidence            899999999999888886422 22333  4677766666557889999998876655443210                 


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCC---------C
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS---------R  228 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~---------~  228 (309)
                      ++.            +         ....+.+.+. +|+.++..-.+..|.+.|..+++.+..+......         .
T Consensus       167 ~g~------------~---------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~  224 (262)
T 3nol_A          167 HGE------------E---------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPI  224 (262)
T ss_dssp             TTE------------E---------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSC
T ss_pred             CCc------------c---------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcC
Confidence            000            0         0112334444 7777776767889999999999999888753221         1


Q ss_pred             CccceEEECCCCCEEEEEcC
Q 021648          229 NSTLEASFSPEGMFVISGSG  248 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~  248 (309)
                      .....+||+|+++.|...+.
T Consensus       225 ~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          225 DVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             CCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEEcCCCCEEEEECC
Confidence            22356999998777666654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.11  E-value=1.6e-07  Score=83.31  Aligned_cols=226  Identities=13%  Similarity=0.110  Sum_probs=138.2

Q ss_pred             CCCCEE-EEeeCCCcEEEEEcCCC----ceeeeeec-------cccceeEEEEecCCCEEEEEcCC---CCCceeEEEEc
Q 021648           21 KSSSYL-VTASDDESIRLYDVTAA----TCLKTINS-------KKYGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSL   85 (309)
Q Consensus        21 ~~~~~l-~t~s~D~~v~iWd~~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~s~~---g~d~~i~~~d~   85 (309)
                      +++++| +++..+.+|.|.|+.+.    +..++++.       .......+.+.|++ .++++..+   +..+.+.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            777765 67778999999999754    55566631       11123456777888 44433211   12378999999


Q ss_pred             cCCceEEEeee--cc-cCEEEEEecCCCCeEEEec-------------------CCCcEEEeeCCCceeeeeeeecC---
Q 021648           86 HDNKYLRYFKG--HH-DRVVSLSLCSSKDCFISGS-------------------LDRTVLLWDQRAEKCQGLLRVQG---  140 (309)
Q Consensus        86 ~~~~~~~~~~~--h~-~~v~~v~~~~~~~~l~s~s-------------------~Dg~v~~Wd~~~~~~~~~~~~~~---  140 (309)
                      ++++.+....-  .. ..-..+.|+|+++.++++.                   .+.+|.+||+.+++....+.+..   
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            99998887752  22 1234577899999999885                   37899999999887777766531   


Q ss_pred             ce-eE--EECCCCcEEEE--E-----ECCEEEEEECCCCCcCCceEEEeCC-----C-----------CCCCeEEEEccC
Q 021648          141 RP-AA--AYDDQGLVFAV--A-----FGGYIRMFDARKYEKGPFDIFSVGG-----D-----------ISDANVVKFSND  194 (309)
Q Consensus       141 ~~-~~--~~~~~~~~~~~--~-----~~~~i~~~d~~~~~~~~~~~~~~~~-----~-----------~~~~~~v~~s~d  194 (309)
                      .+ ..  .+++++.++.+  .     .++.|.+|......-.......+..     .           ......+.+|||
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            11 12  23666653333  3     3457765543211000000110000     0           133567899999


Q ss_pred             CCEEEEEe-CCCcEEEEECC---CCeEeEEeeecCC---------C--CCccceEEECCCCCEEEEEc
Q 021648          195 GRLMLLTT-MEGHIHVLDSF---RGTLLSTYNVKPV---------S--RNSTLEASFSPEGMFVISGS  247 (309)
Q Consensus       195 g~~l~~~~-~dg~v~i~d~~---~~~~~~~~~~~~~---------~--~~~~~~~~~sp~g~~l~s~s  247 (309)
                      |++|.++. ..+.|.+||+.   +.+++........         .  ......+.++|||++|+.+.
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99876554 57899999975   2355554443210         0  01245689999999999998

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.10  E-value=3.5e-08  Score=93.76  Aligned_cols=269  Identities=15%  Similarity=0.146  Sum_probs=158.3

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeeccccc----------e-eEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYG----------V-DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL   91 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~   91 (309)
                      +..+..++.++.|.-+|..+|+.+..+......          + ...+.  .+..+++++.   |+.+..+|.++|+.+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~---dg~l~AlDa~TG~~~  144 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVL---DGRLEAIDAKTGQRA  144 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT---TSEEEEEETTTCCEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEcc---CCEEEEEECCCCCEe
Confidence            556777788999999999999998776543210          0 01122  3456666543   789999999999998


Q ss_pred             EEeeec--ccCEEEEEecC---CCCeEEEec-----CCCcEEEeeCCCceeeeeeeec-Cc-------------------
Q 021648           92 RYFKGH--HDRVVSLSLCS---SKDCFISGS-----LDRTVLLWDQRAEKCQGLLRVQ-GR-------------------  141 (309)
Q Consensus        92 ~~~~~h--~~~v~~v~~~~---~~~~l~s~s-----~Dg~v~~Wd~~~~~~~~~~~~~-~~-------------------  141 (309)
                      ..+...  ......+..+|   ++..++..+     .|+.|..||.++++....+... ..                   
T Consensus       145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g  224 (689)
T 1yiq_A          145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG  224 (689)
T ss_dssp             EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred             eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence            877642  11111111122   444444332     3799999999999876554320 00                   


Q ss_pred             -------------eeEEECCCCcEEEEEE-CC-------------------EEEEEECCCCCcCCceEEEeCCCC-----
Q 021648          142 -------------PAAAYDDQGLVFAVAF-GG-------------------YIRMFDARKYEKGPFDIFSVGGDI-----  183 (309)
Q Consensus       142 -------------~~~~~~~~~~~~~~~~-~~-------------------~i~~~d~~~~~~~~~~~~~~~~~~-----  183 (309)
                                   ....+++...++..+. ++                   .|..+|.++.+.. . .+....+.     
T Consensus       225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~-W-~~~~~~~d~wd~~  302 (689)
T 1yiq_A          225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYV-W-HYQTTPGDAWDYT  302 (689)
T ss_dssp             STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEE-E-EEESSTTCCSCCC
T ss_pred             ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCcee-E-eeecCCccccccc
Confidence                         1235555444444443 33                   3888888765421 0 11111110     


Q ss_pred             --CCCeEEEEccCCC---EEEEEeCCCcEEEEECCCCeEeEEeeecCCC-------------------------------
Q 021648          184 --SDANVVKFSNDGR---LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS-------------------------------  227 (309)
Q Consensus       184 --~~~~~v~~s~dg~---~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-------------------------------  227 (309)
                        .......+..+|+   .++.++.+|.++++|..+|+++......+..                               
T Consensus       303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~  382 (689)
T 1yiq_A          303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT  382 (689)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred             CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence              1112222334665   7888899999999999999988543321100                               


Q ss_pred             ----CCcc-ceEEECCCCCEEEEEcC---------------------------------------------CCcEEEEEC
Q 021648          228 ----RNST-LEASFSPEGMFVISGSG---------------------------------------------DGSVYAWSV  257 (309)
Q Consensus       228 ----~~~~-~~~~~sp~g~~l~s~s~---------------------------------------------Dg~i~vwd~  257 (309)
                          .... ..++|+|+.+.+++.+.                                             +|.|+.||+
T Consensus       383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~  462 (689)
T 1yiq_A          383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP  462 (689)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred             CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence                0001 12789999888877532                                             478999999


Q ss_pred             CCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          258 RSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       258 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      .+++.+-....+. ....-.+...+.++..++.|.+++.+|.
T Consensus       463 ~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~  503 (689)
T 1yiq_A          463 VKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA  503 (689)
T ss_dssp             TTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             CCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEEC
Confidence            9999887765543 2333344445555556676655554443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.07  E-value=6.9e-09  Score=89.04  Aligned_cols=258  Identities=12%  Similarity=0.127  Sum_probs=151.7

Q ss_pred             eEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648           14 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY   93 (309)
Q Consensus        14 V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~   93 (309)
                      ..++.++.++. +..++.++.|..|| .+++.+.........+..+....++ .++.++    +. +..+|. +++.+..
T Consensus        22 ~~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t----~~-l~~~d~-~g~~~~~   92 (330)
T 3hxj_A           22 DSSPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDG-TIYFGS----DK-VYAINP-DGTEKWR   92 (330)
T ss_dssp             CCCCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTT-EECCSS----CE-EEEECC-CGGGGGG
T ss_pred             ccCceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCC-cEEEec----Cc-EEEECC-CCcEEEE
Confidence            34455556664 55667889999999 8888776655444334444544444 344332    33 788886 5554443


Q ss_pred             eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEEECCEEEEEECCCCCc
Q 021648           94 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAFGGYIRMFDARKYEK  171 (309)
Q Consensus        94 ~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  171 (309)
                      +...........+.  +..+..++.++.+..+|.+ ++.........  .......+++.++.+..++.+..+|.. .+.
T Consensus        93 ~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~  168 (330)
T 3hxj_A           93 FDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTE  168 (330)
T ss_dssp             SCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCE
T ss_pred             EECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCE
Confidence            33222222222333  4567778889999999987 55443333222  122344556677766667899999875 221


Q ss_pred             CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCc
Q 021648          172 GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS  251 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~  251 (309)
                          ..........+..+.+.++|.+++..   +.+..+| .+++.+..+..   ....+..+...++|+. ..++.++.
T Consensus       169 ----~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~---~~~~~~~~~~~~~g~l-~v~t~~~g  236 (330)
T 3hxj_A          169 ----KWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYA---GYWTVTRPAISEDGTI-YVTSLDGH  236 (330)
T ss_dssp             ----EEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECC---SSCCCSCCEECTTSCE-EEEETTTE
T ss_pred             ----eEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEcc---CCcceeceEECCCCeE-EEEcCCCe
Confidence                11121222345566777888866544   8899999 67766655442   2244566788888755 45666788


Q ss_pred             EEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc-eEEEeee
Q 021648          252 VYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS-ELSFWIP  297 (309)
Q Consensus       252 i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~-d~~~~~~  297 (309)
                      +..+|. +++.+..+......+..+...+++++.+.... .+..+.+
T Consensus       237 l~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          237 LYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP  282 (330)
T ss_dssp             EEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred             EEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence            999984 56666666554445566677777766655443 3544443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.06  E-value=1.5e-07  Score=81.19  Aligned_cols=193  Identities=12%  Similarity=0.064  Sum_probs=118.6

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec---c-ccceeEEEEecCCCEEEEEcCC-CCCceeEEEEc
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS---K-KYGVDLVCFTSHPTTVIYSSKN-GWDESLRLLSL   85 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~~~~~s~~-g~d~~i~~~d~   85 (309)
                      ...+.++.|+|+|+++++. . ..|.+||..+++.......   . ...+..+++.+++...+..... .......+|.+
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~  166 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  166 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence            4578999999999887765 3 4599999988765432211   1 2346788899988754433210 00122344444


Q ss_pred             cCCceEEEeeecccCEEEEEecCCCCeE-EEecCCCcEEEeeCC--Cc-eeeeeeeecCceeEEECCCCcEEEEEECCEE
Q 021648           86 HDNKYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQR--AE-KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI  161 (309)
Q Consensus        86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~Dg~v~~Wd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (309)
                      .+++ +..+..+......++|+||++.+ ++.+.++.|.+||+.  ++ ....      .         ..+        
T Consensus       167 ~~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~------~---------~~~--------  222 (326)
T 2ghs_A          167 AKGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK------A---------EVF--------  222 (326)
T ss_dssp             ETTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC------C---------EEE--------
T ss_pred             eCCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC------c---------eEE--------
Confidence            3444 33343444567899999999865 555667899999875  33 2100      0         000        


Q ss_pred             EEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEEC-CCC
Q 021648          162 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEG  240 (309)
Q Consensus       162 ~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~s-p~g  240 (309)
                        .+..             ........++++++|.+.++...++.|.+||. +++.+..+..   +...+.+++|+ |++
T Consensus       223 --~~~~-------------~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~---~~~~~~~~af~g~d~  283 (326)
T 2ghs_A          223 --IDST-------------GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV---PGKQTTCPAFIGPDA  283 (326)
T ss_dssp             --EECT-------------TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC---SCSBEEEEEEESTTS
T ss_pred             --EECC-------------CCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC---CCCCcEEEEEecCCC
Confidence              0000             00011246788999998888777889999998 5776666553   23457789998 898


Q ss_pred             CEEEEEcC
Q 021648          241 MFVISGSG  248 (309)
Q Consensus       241 ~~l~s~s~  248 (309)
                      +.|+.++.
T Consensus       284 ~~L~vt~~  291 (326)
T 2ghs_A          284 SRLLVTSA  291 (326)
T ss_dssp             CEEEEEEB
T ss_pred             CEEEEEec
Confidence            87755543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.05  E-value=4.3e-08  Score=89.75  Aligned_cols=239  Identities=8%  Similarity=0.049  Sum_probs=153.9

Q ss_pred             CCCCEEEEee-CCCcEEEEEcCCCceeeeeecc-ccceeEEEE-e-cCCCEEEEEcC---------------CCCCceeE
Q 021648           21 KSSSYLVTAS-DDESIRLYDVTAATCLKTINSK-KYGVDLVCF-T-SHPTTVIYSSK---------------NGWDESLR   81 (309)
Q Consensus        21 ~~~~~l~t~s-~D~~v~iWd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~~~~~s~---------------~g~d~~i~   81 (309)
                      +||+++.... .+..|.+-|+.+.++.+.+.-. ......+++ + |+++++++++.               +.+++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            4888765544 4667999999999998844321 123566676 4 88888877731               12367899


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCC--------------------------------------cEE
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR--------------------------------------TVL  123 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg--------------------------------------~v~  123 (309)
                      +.|.++.+.+..+.--. ....++++|||+++.+.+.+.                                      .|.
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            99999988776654211 345677899999888877553                                      466


Q ss_pred             EeeCCC--cee-eeeeeecCc-eeEEECCCCcEEEEEE--CCEEEEEECCCCCc-------CCceE-EEeCCCCCCCeEE
Q 021648          124 LWDQRA--EKC-QGLLRVQGR-PAAAYDDQGLVFAVAF--GGYIRMFDARKYEK-------GPFDI-FSVGGDISDANVV  189 (309)
Q Consensus       124 ~Wd~~~--~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~-------~~~~~-~~~~~~~~~~~~v  189 (309)
                      +.|.++  ++. ...+..... ..+.+++++.++.++.  ++.+.++|+.+.+.       ....+ ..+. --....-+
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~  336 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT  336 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred             EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence            667665  332 333433322 2467788887666664  58999999875320       00001 1111 11245778


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCC----------CeEeEEeeecCC--CCCccceEEECCCCCEEEEE---cCCCcE--
Q 021648          190 KFSNDGRLMLLTTMEGHIHVLDSFR----------GTLLSTYNVKPV--SRNSTLEASFSPEGMFVISG---SGDGSV--  252 (309)
Q Consensus       190 ~~s~dg~~l~~~~~dg~v~i~d~~~----------~~~~~~~~~~~~--~~~~~~~~~~sp~g~~l~s~---s~Dg~i--  252 (309)
                      +|+|+|..+++...|++|.+||+.+          ...+.+...+.+  |........++|||++|+++   +.|+.+  
T Consensus       337 aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~  416 (595)
T 1fwx_A          337 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNV  416 (595)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCC
T ss_pred             EECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccC
Confidence            9999997777888999999999876          455665554322  22222345678999999998   335532  


Q ss_pred             --------EEEECCCCc
Q 021648          253 --------YAWSVRSGK  261 (309)
Q Consensus       253 --------~vwd~~~~~  261 (309)
                              .++|+..++
T Consensus       417 gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          417 GPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CSSCCEEEEEEECSSSS
T ss_pred             CCCCCCcceEEEcCCCc
Confidence                    889996544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.03  E-value=3e-06  Score=70.50  Aligned_cols=248  Identities=12%  Similarity=0.042  Sum_probs=146.9

Q ss_pred             CEEEEeeCCCcEEEEEcCCCcee-----eeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecc
Q 021648           24 SYLVTASDDESIRLYDVTAATCL-----KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH   98 (309)
Q Consensus        24 ~~l~t~s~D~~v~iWd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~   98 (309)
                      .+|+-+.. +.|+.+|++.....     ..+.........+++.+++..++++..  .++.|..+++..+.....+....
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~~   78 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI--SEPSIGRASLHGGEPTTIIRQDL   78 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET--TTTEEEEEESSSCCCEEEECTTC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEEC--CCCEEEEEecCCCCcEEEEECCC
Confidence            34444443 47888888754321     112222234567889888778877653  26789999987665433333333


Q ss_pred             cCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeeec-Cc-eeEEECC-CCcEEEEEE---CCEEEEEECCCCCc
Q 021648           99 DRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ-GR-PAAAYDD-QGLVFAVAF---GGYIRMFDARKYEK  171 (309)
Q Consensus        99 ~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~---~~~i~~~d~~~~~~  171 (309)
                      .....+++.++++ ..++-...+.|.++++............ .. ...++++ .+.++.+..   .+.|..+++.... 
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-  157 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-  157 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-
Confidence            5788999998654 5566667789999987643322222111 12 2345665 455444443   3578888764311 


Q ss_pred             CCceEEEeCCCCCCCeEEEEccCCC-EEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC
Q 021648          172 GPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG  250 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg  250 (309)
                        .... ..........++++|++. ++++....+.|.++|............   . .....++.. ++..+++-...+
T Consensus       158 --~~~~-~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---~-~~P~gi~~d-~~~lyva~~~~~  229 (267)
T 1npe_A          158 --RRIL-AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---L-QYPFAVTSY-GKNLYYTDWKTN  229 (267)
T ss_dssp             --CEEE-ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---C-CSEEEEEEE-TTEEEEEETTTT
T ss_pred             --cEEE-EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC---C-CCceEEEEe-CCEEEEEECCCC
Confidence              1111 112233567899999765 556666778999999865433322221   1 222345543 344444445668


Q ss_pred             cEEEEECCCCceEEEeecCC-CCCcEEEECCCee
Q 021648          251 SVYAWSVRSGKEVASWMSFD-TEPPVIKWTPGSL  283 (309)
Q Consensus       251 ~i~vwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~  283 (309)
                      .|.++|..+++.+.++.... ..+..+++.|++.
T Consensus       230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             eEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            99999999998888875432 2467888888764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.02  E-value=9.1e-08  Score=78.90  Aligned_cols=198  Identities=10%  Similarity=0.055  Sum_probs=129.1

Q ss_pred             ccceEecCCCcc--eEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648            2 EVGMSFRDYNGR--ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         2 ~~~~~~~~h~~~--V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      |++.++. |...  ...+.|+. +.+..+.+.++.|+++|+.+++.++.+ ... ........++++.++...  ..++.
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~lt--w~~~~  117 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLT--WTEGL  117 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEE--SSSCE
T ss_pred             EEEEEEc-CCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEE--ccCCE
Confidence            4556663 4433  36888884 677889999999999999999998877 322 222222334555665553  34789


Q ss_pred             eEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECC
Q 021648           80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG  159 (309)
Q Consensus        80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (309)
                      +.++|.++.+.+.++.-- ..-++++  +|++.|+.+..++.|.++|.++.+....+.+...                 +
T Consensus       118 v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~-----------------g  177 (268)
T 3nok_A          118 LFTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR-----------------G  177 (268)
T ss_dssp             EEEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET-----------------T
T ss_pred             EEEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC-----------------C
Confidence            999999999988888742 3334444  5677777666688999999988776554433210                 0


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC----------CCC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV----------SRN  229 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~----------~~~  229 (309)
                                    .       .....+.+.+. +|+.++..-.+..|.+.|..+++.+..+.....          ...
T Consensus       178 --------------~-------~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~  235 (268)
T 3nok_A          178 --------------Q-------PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEA  235 (268)
T ss_dssp             --------------E-------ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTC
T ss_pred             --------------c-------ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCC
Confidence                          0       00112334444 777776666788999999999999988775311          112


Q ss_pred             ccceEEECCCCCEEEEEc
Q 021648          230 STLEASFSPEGMFVISGS  247 (309)
Q Consensus       230 ~~~~~~~sp~g~~l~s~s  247 (309)
                      ....+||+|+++.|+..+
T Consensus       236 vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          236 VLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CEEEEEECTTTCCEEEEE
T ss_pred             ceEEEEEcCCCCEEEEeC
Confidence            335699999765444433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.02  E-value=1e-07  Score=87.35  Aligned_cols=256  Identities=11%  Similarity=0.059  Sum_probs=161.3

Q ss_pred             EEEeeCCCcEEEEEcCCCceeeeee-----------------------------------cc-cc---ceeEEEEec---
Q 021648           26 LVTASDDESIRLYDVTAATCLKTIN-----------------------------------SK-KY---GVDLVCFTS---   63 (309)
Q Consensus        26 l~t~s~D~~v~iWd~~~~~~~~~~~-----------------------------------~~-~~---~v~~~~~~~---   63 (309)
                      +.||+.-|.++|+-+.+++.++.+.                                   +. ..   ......++.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            7899999999999998887765421                                   00 00   011234444   


Q ss_pred             --CCCEEEEEcCCCCCceeEEEEccCCceEEEeeec-ccCEEEEEe-c-CCCCeEEEec------------------CCC
Q 021648           64 --HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH-HDRVVSLSL-C-SSKDCFISGS------------------LDR  120 (309)
Q Consensus        64 --~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h-~~~v~~v~~-~-~~~~~l~s~s------------------~Dg  120 (309)
                        |+++++....  .+..|.+.|+.+.+..+.+.-- ......+.+ . |+++++..++                  .++
T Consensus        98 ~~DG~~lfVnd~--~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A           98 KYDGRFLFMNDK--ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEEEET--TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             CcCCCEEEEEcC--CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence              6666666543  2678999999999987755421 235778887 4 8998887774                  356


Q ss_pred             cEEEeeCCCceeeeeeeecCce-eEEECCCCcEEEEEE-C--------------------------------------CE
Q 021648          121 TVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVAF-G--------------------------------------GY  160 (309)
Q Consensus       121 ~v~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~--------------------------------------~~  160 (309)
                      .+-+.|.++.+....+.+.+.+ ....++++.++.++. +                                      +.
T Consensus       176 ~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             eEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            8899999988887777664432 344555555444333 1                                      12


Q ss_pred             EEEEECCCCCcCC-ceEEEeCCCCCCCeEEEEccCCCEEEEEe-CCCcEEEEECCCCe------------EeEEeeecCC
Q 021648          161 IRMFDARKYEKGP-FDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGT------------LLSTYNVKPV  226 (309)
Q Consensus       161 i~~~d~~~~~~~~-~~~~~~~~~~~~~~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~~------------~~~~~~~~~~  226 (309)
                      +.+.|.++.+... .......   .....+.+||||+++..++ .+.+|.++|..+.+            ...+..    
T Consensus       256 V~VID~~~~~~~~~~~~Ipvg---~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~----  328 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE----  328 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB----
T ss_pred             EEEEeCcccCCceeEEEEecC---CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC----
Confidence            5555554421111 1112221   1235688999999776654 68999999988642            222222    


Q ss_pred             CCCccceEEECCCCCEEEEEcCCCcEEEEECCC----------CceEEEeecCCCC-----CcEEEECCCeeEEEEccc
Q 021648          227 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS----------GKEVASWMSFDTE-----PPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       227 ~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~----------~~~~~~~~~~~~~-----v~~l~~~p~~~~l~s~~~  290 (309)
                      ......-++|+|+|+-..+.-.|+.|.+||+.+          .+.+.++..|-.+     -..+..+|||++|++...
T Consensus       329 vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          329 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            123356789999995556678899999999977          4455565544321     123456899998877653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.96  E-value=1.1e-07  Score=79.04  Aligned_cols=194  Identities=14%  Similarity=0.111  Sum_probs=130.3

Q ss_pred             CEEEEEecCCCCeEEEecC--CCcEEEeeCCCceeeeeeeecCce---eEEECCCCcEEEEE-ECCEEEEEECCCCCcCC
Q 021648          100 RVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFAVA-FGGYIRMFDARKYEKGP  173 (309)
Q Consensus       100 ~v~~v~~~~~~~~l~s~s~--Dg~v~~Wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~  173 (309)
                      ....+.|++++...++.+.  ++.|++.|+++++....+.+....   ..... .+.++.+. .++.+.++|..+++.  
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v--   98 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSN--   98 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEE--
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcE--
Confidence            3678999998766666554  689999999999988776554321   22333 23444444 468999999875432  


Q ss_pred             ceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC--CCCccceEEECCCCCEEEEEcCCCc
Q 021648          174 FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--SRNSTLEASFSPEGMFVISGSGDGS  251 (309)
Q Consensus       174 ~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~sp~g~~l~s~s~Dg~  251 (309)
                      ...+... ...   ...+++||+.+..+..+++|+++|..+.+.+.+......  .......+.|. +|+.++....++.
T Consensus        99 ~~~i~~g-~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A           99 IKNFTHQ-MKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             EEEEECC-SSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEEECC-CCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence            2222222 111   234677887666666789999999999888877664311  11124567787 7876677667899


Q ss_pred             EEEEECCCCceEEEeecC-----------C--CCCcEEEECCCe-eEEEEccceEEEeeecCCC
Q 021648          252 VYAWSVRSGKEVASWMSF-----------D--TEPPVIKWTPGS-LMFVTGSSELSFWIPDLSK  301 (309)
Q Consensus       252 i~vwd~~~~~~~~~~~~~-----------~--~~v~~l~~~p~~-~~l~s~~~d~~~~~~~~~~  301 (309)
                      |.+.|..+++.+..+..-           .  ...+.|+|+|++ ++++++...-+++..++..
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            999999999988876421           0  245789999986 6778887766666665543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.95  E-value=3.3e-07  Score=86.68  Aligned_cols=270  Identities=10%  Similarity=0.037  Sum_probs=150.2

Q ss_pred             EEEeCC-CCCEEEEeeCCC-----------cEEEEEcCCCceeee--eec-cccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648           16 SMDFHK-SSSYLVTASDDE-----------SIRLYDVTAATCLKT--INS-KKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus        16 ~i~~s~-~~~~l~t~s~D~-----------~v~iWd~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      .+++.| ++++++.|+.+.           .+.+||..+++-...  +.. +......+++..++..++++...  +..+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~--~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND--AKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS--TTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC--CCce
Confidence            456667 888999988654           588999988764332  211 12223345666777766665432  4589


Q ss_pred             EEEEccCCceEEEeeecccCE-EEEEecCCCCeEEEec-CC-----CcEEEeeCCCceeeeee-----eecC-ceeEEEC
Q 021648           81 RLLSLHDNKYLRYFKGHHDRV-VSLSLCSSKDCFISGS-LD-----RTVLLWDQRAEKCQGLL-----RVQG-RPAAAYD  147 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~s-~D-----g~v~~Wd~~~~~~~~~~-----~~~~-~~~~~~~  147 (309)
                      .+||..+++-...-.-+..+- .++...++++.++.|+ .+     ..+.+||+++++....-     .+.. .....+.
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~  347 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  347 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence            999998775332222122221 2445567899999998 45     57999999887654320     1100 0000111


Q ss_pred             CCCc-EEEEEE---------CCEEEEEECCCCCcCCceEEEeCC-------CCCCCeEEEEc-cCCCEEEEEeCCC----
Q 021648          148 DQGL-VFAVAF---------GGYIRMFDARKYEKGPFDIFSVGG-------DISDANVVKFS-NDGRLMLLTTMEG----  205 (309)
Q Consensus       148 ~~~~-~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~-------~~~~~~~v~~s-~dg~~l~~~~~dg----  205 (309)
                      ..+. ++.++.         ...+..||.....-  ........       ......++.+. .++++++.|+.++    
T Consensus       348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w--~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~  425 (656)
T 1k3i_A          348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD--VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS  425 (656)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE--EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred             cCCceEEEECCCCcEEEecCccceeeeecCCcce--eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence            1222 222222         34677888754321  01111000       01123444554 3788888888543    


Q ss_pred             -------cEEEEECCCCeEeEEeeecCCCCCcc-ceEEECCCCCEEEEEcCC-----------CcEEEEECCCCceE--E
Q 021648          206 -------HIHVLDSFRGTLLSTYNVKPVSRNST-LEASFSPEGMFVISGSGD-----------GSVYAWSVRSGKEV--A  264 (309)
Q Consensus       206 -------~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~sp~g~~l~s~s~D-----------g~i~vwd~~~~~~~--~  264 (309)
                             .|.+||..+..-.... ......... ..+...|+|+.++.||.+           ..+.+||..+.+-.  .
T Consensus       426 ~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~  504 (656)
T 1k3i_A          426 DATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN  504 (656)
T ss_dssp             BCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred             CcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence                   6778887766543322 011122222 345677899999999865           46899999775432  2


Q ss_pred             EeecCCCCCcEEEECCCeeEEEEccc
Q 021648          265 SWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       265 ~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      .+........+..+.|+++.++.|+.
T Consensus       505 ~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          505 PNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCccccccHhhcCCCcEEEecCCC
Confidence            22211122334557899999999884

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.94  E-value=6.5e-07  Score=73.11  Aligned_cols=200  Identities=11%  Similarity=0.094  Sum_probs=128.8

Q ss_pred             ccceEecCCCcc--eEEEEeCCCCCEEEEeeCCC--cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCC
Q 021648            2 EVGMSFRDYNGR--ISSMDFHKSSSYLVTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD   77 (309)
Q Consensus         2 ~~~~~~~~h~~~--V~~i~~s~~~~~l~t~s~D~--~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d   77 (309)
                      |++.++ -|...  ...+.|++ +.+..|.+.++  +|+.+|+.+|+.++.+...... ....+...++.++...  ..+
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-fgeGi~~~~~~ly~lt--w~~   84 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-FGAGIVAWRDRLIQLT--WRN   84 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-CEEEEEEETTEEEEEE--SSS
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-ceeEEEEeCCEEEEEE--eeC
Confidence            456666 35543  56899997 66777877764  9999999999998877543321 1122223355665543  347


Q ss_pred             ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEE
Q 021648           78 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF  157 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (309)
                      +.+.++|.++.+.+.++.-- ..-+++  +++++.|+.+..++.|.++|.++.+....+.+...                
T Consensus        85 ~~v~v~D~~tl~~~~ti~~~-~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~----------------  145 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRYP-GEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG----------------  145 (243)
T ss_dssp             SEEEEEETTTTEEEEEEECS-SCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEET----------------
T ss_pred             CEEEEEECCcCcEEEEEeCC-CCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC----------------
Confidence            89999999999988888643 232444  45666666555688999999988766554433210                


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCC---------C
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS---------R  228 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~---------~  228 (309)
                       +              ..       ...++.+.+. +|+.++..-.+..|.+.|+.+++.+..+......         .
T Consensus       146 -g--------------~~-------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~  202 (243)
T 3mbr_X          146 -G--------------RP-------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDST  202 (243)
T ss_dssp             -T--------------EE-------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTT
T ss_pred             -C--------------cc-------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCc
Confidence             0              00       0112233333 6777766667789999999999999888754221         1


Q ss_pred             -CccceEEECCCCCEEEEEcC
Q 021648          229 -NSTLEASFSPEGMFVISGSG  248 (309)
Q Consensus       229 -~~~~~~~~sp~g~~l~s~s~  248 (309)
                       .....++|+|+++.|...+.
T Consensus       203 ~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          203 NDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             SSCEEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEEcCCCCEEEEECC
Confidence             23356999998766555543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.92  E-value=5.3e-06  Score=71.09  Aligned_cols=237  Identities=11%  Similarity=0.100  Sum_probs=144.4

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec--------------------cccceeEEEEecCCCEEEEEc
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS--------------------KKYGVDLVCFTSHPTTVIYSS   72 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~~~~~s   72 (309)
                      ...+++++++++++.++..++.|..||..+++.. .+..                    ....+..+++.++...++.+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            3557889999987888888999999988765432 2210                    012356678876334455543


Q ss_pred             CCCCCceeEEEEccCCceEEEeee-----cccCEEEEEecC-CCCeEEEecC-----------------CCcEEEeeCCC
Q 021648           73 KNGWDESLRLLSLHDNKYLRYFKG-----HHDRVVSLSLCS-SKDCFISGSL-----------------DRTVLLWDQRA  129 (309)
Q Consensus        73 ~~g~d~~i~~~d~~~~~~~~~~~~-----h~~~v~~v~~~~-~~~~l~s~s~-----------------Dg~v~~Wd~~~  129 (309)
                      .   .+.+..+|..+++ +..+..     .......+.+.+ +|+..++-..                 ++.|..+|..+
T Consensus        99 ~---~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           99 C---YYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             T---TTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             C---CCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            2   2347888876553 222221     123578899999 8987666432                 36788888876


Q ss_pred             ceeeeeee-ecCceeEEECCCCcEEEEE--ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC---
Q 021648          130 EKCQGLLR-VQGRPAAAYDDQGLVFAVA--FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---  203 (309)
Q Consensus       130 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~---  203 (309)
                      ++...... ...-...++++++..+..+  ..+.|..|++.....+....+..  ... ...++++++|+++++...   
T Consensus       175 ~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~~~~  251 (322)
T 2fp8_A          175 KETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSSSEELD  251 (322)
T ss_dssp             TEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEEEEETT
T ss_pred             CEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEecCccc
Confidence            65432221 1222346777777644444  35789999986432222232221  112 567899999998877655   


Q ss_pred             -------CCcEEEEECCCCeEeEEeeecCCC-CCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          204 -------EGHIHVLDSFRGTLLSTYNVKPVS-RNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       204 -------dg~v~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                             .+.|..+|. .++.+..+...... ...+..+++ .+++.+++....+.|.++++..
T Consensus       252 ~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          252 GNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             SSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             ccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence                   567888987 47777666543211 233445666 4677666667788899998853

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.92  E-value=8.3e-06  Score=78.75  Aligned_cols=274  Identities=13%  Similarity=0.173  Sum_probs=165.7

Q ss_pred             eEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE
Q 021648           14 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR   92 (309)
Q Consensus        14 V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~   92 (309)
                      |.++..++++.+.+ +..++.+..||..+++...... .....+..+...+++...+ +..   ++-+..||..+++...
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~---~~Gl~~~~~~~~~~~~  249 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATE---GAGLFLINPKTKEIKN  249 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEB---SSCEEEEETTTTEEEE
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EEC---CCCeEEEeCCCCeEEE
Confidence            88888888887665 5555568899987765433221 1233466666655554333 332   2348889987765443


Q ss_pred             Eeee-------cccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee---------cCceeEEECCCCcEEEEE
Q 021648           93 YFKG-------HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV---------QGRPAAAYDDQGLVFAVA  156 (309)
Q Consensus        93 ~~~~-------h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  156 (309)
                      ....       ....|.++...++++.. .|..+ -+.+||..+++.......         ........+..+.+..+.
T Consensus       250 ~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt  327 (795)
T 4a2l_A          250 YLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGT  327 (795)
T ss_dssp             ECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEE
T ss_pred             eecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEE
Confidence            3222       13569999888777644 34445 578889877654432211         112234556677888777


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeC-----CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeec-----CC
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVG-----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-----PV  226 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-----~~  226 (309)
                      .++.|..++....   .+..+...     .....|.++...++|.+. .|+.++-+..||..++.........     ..
T Consensus       328 ~~~Gl~~~~~~~~---~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l  403 (795)
T 4a2l_A          328 YFGGLNYYHPIRN---RFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGI  403 (795)
T ss_dssp             SSSCEEEECGGGG---SSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CC
T ss_pred             CCCCeEEeCCCcc---cceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCC
Confidence            7778888875432   22222111     112357888888888755 4667777889998776543321110     12


Q ss_pred             CCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeec-----CCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          227 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS-----FDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       227 ~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-----~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      ....|.++...++|+.|..|+.++.+.+||..+++. ..+..     ....|.++...+++++.+.....+..+.++.
T Consensus       404 ~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~  480 (795)
T 4a2l_A          404 GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQ  480 (795)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTT
T ss_pred             CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCC
Confidence            235677788888888566677777799999987653 33321     2346778888888876655545566665543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.89  E-value=2.8e-07  Score=75.95  Aligned_cols=187  Identities=13%  Similarity=0.094  Sum_probs=123.7

Q ss_pred             EEEEEecCCCCeEEEecCCC--cEEEeeCCCceeeeeeeecCce---eEEECCCCcEEEEE-ECCEEEEEECCCCCcCCc
Q 021648          101 VVSLSLCSSKDCFISGSLDR--TVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPF  174 (309)
Q Consensus       101 v~~v~~~~~~~~l~s~s~Dg--~v~~Wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~  174 (309)
                      ...+.|+ ++....+.+.+|  .|+..|+++++....+.+....   ...... +.++.+. .++.+.+||..+++.  .
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g-~~ly~ltw~~~~v~v~D~~t~~~--~  120 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK-DKIVGLTWKNGLGFVWNIRNLRQ--V  120 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTCCE--E
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC-CEEEEEEeeCCEEEEEECccCcE--E
Confidence            4788888 677778888776  9999999999988777655432   123333 3444443 478999999876542  2


Q ss_pred             eEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC--CCCccceEEECCCCCEEEEEcCCCcE
Q 021648          175 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--SRNSTLEASFSPEGMFVISGSGDGSV  252 (309)
Q Consensus       175 ~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~sp~g~~l~s~s~Dg~i  252 (309)
                      ..+...+.     ...+++|++.|..+..+++|+++|..+.+.+.+......  ....+..+.|. +|+.++..-.+..|
T Consensus       121 ~ti~~~~e-----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I  194 (262)
T 3nol_A          121 RSFNYDGE-----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKI  194 (262)
T ss_dssp             EEEECSSC-----CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred             EEEECCCC-----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeE
Confidence            22233221     123456777766666688999999999988887665311  11223346775 78777777778899


Q ss_pred             EEEECCCCceEEEeecC------------CCCCcEEEECCCe-eEEEEccceEEEeee
Q 021648          253 YAWSVRSGKEVASWMSF------------DTEPPVIKWTPGS-LMFVTGSSELSFWIP  297 (309)
Q Consensus       253 ~vwd~~~~~~~~~~~~~------------~~~v~~l~~~p~~-~~l~s~~~d~~~~~~  297 (309)
                      .+.|.++++.+..+..-            ....+.|||+|++ +++++|-.=-++|..
T Consensus       195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev  252 (262)
T 3nol_A          195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEI  252 (262)
T ss_dssp             EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEE
Confidence            99999999987776421            1234779999975 566776542334433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.89  E-value=4.7e-07  Score=74.68  Aligned_cols=189  Identities=13%  Similarity=0.027  Sum_probs=126.2

Q ss_pred             CEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce---eEEECCCCcEEEEEECCEEEEEECCCCCcCCceE
Q 021648          100 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI  176 (309)
Q Consensus       100 ~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  176 (309)
                      ....+.|+ ++...++.+.+|.|+..|+++++....+ +....   ......+..+.+.-.++.+.+||..+++.  ...
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~--~~t  131 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR--ERT  131 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE--EEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE--EEE
Confidence            34788887 4567788899999999999999887766 55432   23444444444433578999999876542  122


Q ss_pred             EEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC--CCCccceEEECCCCCEEEEEcCCCcEEE
Q 021648          177 FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--SRNSTLEASFSPEGMFVISGSGDGSVYA  254 (309)
Q Consensus       177 ~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~sp~g~~l~s~s~Dg~i~v  254 (309)
                      +...+.   -  ..+++|++.|..+..+++|+++|..+.+.+.+......  ....+..+.|. +|+.++....+..|.+
T Consensus       132 i~~~~e---G--wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~v  205 (268)
T 3nok_A          132 TRYSGE---G--WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLE  205 (268)
T ss_dssp             EECSSC---C--CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred             EeCCCc---e--eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEE
Confidence            233221   1  23446788777777799999999999988887764321  11233456676 8877777777889999


Q ss_pred             EECCCCceEEEeecC-------------CCCCcEEEECCC-eeEEEEccceEEEeeec
Q 021648          255 WSVRSGKEVASWMSF-------------DTEPPVIKWTPG-SLMFVTGSSELSFWIPD  298 (309)
Q Consensus       255 wd~~~~~~~~~~~~~-------------~~~v~~l~~~p~-~~~l~s~~~d~~~~~~~  298 (309)
                      .|.++++.+..+..-             ....+.|||+|+ .++|++|-.=-++|...
T Consensus       206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~  263 (268)
T 3nok_A          206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVR  263 (268)
T ss_dssp             ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEE
T ss_pred             EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEE
Confidence            999999987765321             124577999996 46778776433344433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.86  E-value=2e-06  Score=81.43  Aligned_cols=259  Identities=12%  Similarity=0.113  Sum_probs=154.1

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeeccc----cceeEEEEecCCCEEEEEcCC---CCCceeEEEEccCCceEEEee
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKK----YGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRYFK   95 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~s~~---g~d~~i~~~d~~~~~~~~~~~   95 (309)
                      +..++.++.|+.|..+|..+|+.+..+....    ..+...-.. .+..++++..+   +.++.+..+|.++|+.+..+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            4577788899999999999999887665421    111110000 13355554322   135899999999999988875


Q ss_pred             ecc---c----------------------------CEEEEEecCCCCeEEEecCCC-------------------cEEEe
Q 021648           96 GHH---D----------------------------RVVSLSLCSSKDCFISGSLDR-------------------TVLLW  125 (309)
Q Consensus        96 ~h~---~----------------------------~v~~v~~~~~~~~l~s~s~Dg-------------------~v~~W  125 (309)
                      ...   .                            ....+++.++.+.+..++.++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            210   0                            011356777777777777665                   39999


Q ss_pred             eCCCceeeeeeeecCc---------eeEEE--CCCCc----EEEEEECCEEEEEECCCCCcC------Cce-EEEeC---
Q 021648          126 DQRAEKCQGLLRVQGR---------PAAAY--DDQGL----VFAVAFGGYIRMFDARKYEKG------PFD-IFSVG---  180 (309)
Q Consensus       126 d~~~~~~~~~~~~~~~---------~~~~~--~~~~~----~~~~~~~~~i~~~d~~~~~~~------~~~-~~~~~---  180 (309)
                      |.++++..........         +....  ..++.    ++....+|.++++|.++.+.-      ... ...+.   
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            9999988766554211         11111  11232    444446788899887654310      000 00000   


Q ss_pred             ------------C--------CC--CCCeEEEEccCCCEEEEEe------------------------------------
Q 021648          181 ------------G--------DI--SDANVVKFSNDGRLMLLTT------------------------------------  202 (309)
Q Consensus       181 ------------~--------~~--~~~~~v~~s~dg~~l~~~~------------------------------------  202 (309)
                                  +        ..  ..-..++++|+...+....                                    
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence                        0        00  0011257788765544311                                    


Q ss_pred             CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCC-cEEEECCC
Q 021648          203 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPG  281 (309)
Q Consensus       203 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v-~~l~~~p~  281 (309)
                      .+|.|+.||+.+++.+=.....    .......+...|..++.++.|+.+++||.++++.+..+....... .-+.+..+
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~  511 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELA  511 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             ccceEEEEeCCCCcEEEEccCC----CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEEC
Confidence            2378999999999987555432    122233455678899999999999999999999988876543222 23555566


Q ss_pred             eeEEE
Q 021648          282 SLMFV  286 (309)
Q Consensus       282 ~~~l~  286 (309)
                      +++.+
T Consensus       512 G~~yv  516 (668)
T 1kv9_A          512 GRQYV  516 (668)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            66443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.85  E-value=1.3e-09  Score=95.82  Aligned_cols=227  Identities=12%  Similarity=0.097  Sum_probs=110.6

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecccc-ceeE-EEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648           12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY-GVDL-VCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   89 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~-~v~~-~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~   89 (309)
                      +++.+..+.+++..+++++.|+.|..||..+|+.+..+..+.. .+.. .++. .+..+++++   .|+.+..||.++|+
T Consensus        38 ~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~---~dg~v~a~D~~tG~  113 (369)
T 2hz6_A           38 DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGK---KQDIWYVIDLLTGE  113 (369)
T ss_dssp             CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCE---EEEEEEEECCC---
T ss_pred             CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEe---CCCEEEEEECCCCc
Confidence            3444555566777888889999999999999988766654321 1111 0111 233444433   37899999999999


Q ss_pred             eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECC----CCcEEEEEECCEEEEEE
Q 021648           90 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD----QGLVFAVAFGGYIRMFD  165 (309)
Q Consensus        90 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~d  165 (309)
                      .++.+..+.    ...++|+++.+++++.|+.++.||.++++....+............    ++.++.+..++.++.||
T Consensus       114 ~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d  189 (369)
T 2hz6_A          114 KQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVD  189 (369)
T ss_dssp             -----------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEEC
T ss_pred             EEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEE
Confidence            888877654    2345678888999999999999999988765544322211112222    25677777789999999


Q ss_pred             CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEE--EeCCCcEEEEECCCCe----EeEEeeecCCCCCccceEEECC-
Q 021648          166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL--TTMEGHIHVLDSFRGT----LLSTYNVKPVSRNSTLEASFSP-  238 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~--~~~dg~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~sp-  238 (309)
                      .++.+.    .........-+....++++|...+.  ...++.++.+|..+|+    .+-.+...    ..+   . +| 
T Consensus       190 ~~tG~~----~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~----~~~---~-sp~  257 (369)
T 2hz6_A          190 SESGDV----LWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFP----KET---E-AKS  257 (369)
T ss_dssp             TTTCCE----EEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCCC----CHH---H-HHH
T ss_pred             CCCCcE----EEEecCCCceEEEEEecCCceEeccceeecccceeeeehhcCCcccceeeeeccC----ccc---c-ccc
Confidence            876432    2222111111223445566643211  0113445566655554    22111110    111   1 22 


Q ss_pred             -CCCEEEEEcCCCcEEEEECC
Q 021648          239 -EGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       239 -~g~~l~s~s~Dg~i~vwd~~  258 (309)
                       .+..|+.++.||.++.++..
T Consensus       258 ~~~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          258 KLTPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             HSEEEECBEECSSCEECCEEE
T ss_pred             cccceEEEecccCCEEecCcc
Confidence             35678888899999999886

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.84  E-value=2.6e-05  Score=75.23  Aligned_cols=271  Identities=10%  Similarity=0.125  Sum_probs=165.0

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec--------cccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS--------KKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      ...|.++..+++|.+-+ |..++-|..||..+++..+-...        ....|..++..+++..+..+..   ++-+..
T Consensus       356 ~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~---~~Gl~~  431 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH---AGGLSI  431 (795)
T ss_dssp             CSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET---TTEEEE
T ss_pred             CCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC---cCceeE
Confidence            35699999999887654 66777899999877654332211        1234677777666662444432   346899


Q ss_pred             EEccCCceEEEee----ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee--------cCceeEEECCCC
Q 021648           83 LSLHDNKYLRYFK----GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--------QGRPAAAYDDQG  150 (309)
Q Consensus        83 ~d~~~~~~~~~~~----~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~--------~~~~~~~~~~~~  150 (309)
                      +|..+++......    .+...|.++...++++..+.. .+ -+.+||.++++.......        ........+.++
T Consensus       432 ~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g  509 (795)
T 4a2l_A          432 LHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK  509 (795)
T ss_dssp             EETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC
T ss_pred             EeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC
Confidence            9988776433221    234578999888877654443 44 577889877654432211        111233455667


Q ss_pred             cEEEEEECCEEEEEECCCCCcCCceEEEe-----CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee-c
Q 021648          151 LVFAVAFGGYIRMFDARKYEKGPFDIFSV-----GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-K  224 (309)
Q Consensus       151 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~  224 (309)
                      .+..+.. +.+..||.....   + .+..     ......+.++..+++|++.++.. . -+..||..++.... +.. .
T Consensus       510 ~lWigt~-~Gl~~~~~~~~~---~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~-~~~~~  581 (795)
T 4a2l_A          510 RLWIGGE-EGLSVFKQEGLD---I-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKR-YNTTN  581 (795)
T ss_dssp             CEEEEES-SCEEEEEEETTE---E-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEE-ECGGG
T ss_pred             CEEEEeC-CceEEEeCCCCe---E-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEE-eCCCC
Confidence            7766665 568888764321   1 1110     01123577888889998765543 3 57889987765443 322 2


Q ss_pred             CCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCC----C--cEEEECCCeeEEEEccceEEEeeec
Q 021648          225 PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE----P--PVIKWTPGSLMFVTGSSELSFWIPD  298 (309)
Q Consensus       225 ~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~----v--~~l~~~p~~~~l~s~~~d~~~~~~~  298 (309)
                      ......+.++...++|+..+++  ++.|..||..+++ +..+....+-    .  .++...++|++++.+...+..+.|+
T Consensus       582 gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~-~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl~~~~p~  658 (795)
T 4a2l_A          582 GLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEK-FRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITTFRPE  658 (795)
T ss_dssp             TCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTE-EEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTEEEEECGG
T ss_pred             CCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCc-EEEcCCcCCCccccCccCceeECCCCeEEEecCCceEEEcHH
Confidence            2233456778888899887776  3558899997654 4444333221    1  3567788998888877776666664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.79  E-value=4e-05  Score=65.09  Aligned_cols=236  Identities=13%  Similarity=0.032  Sum_probs=135.9

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCC-ceeEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD-ESLRL   82 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d-~~i~~   82 (309)
                      ..+|... .....++|+++|+++++-..++.|..||.... ....+.. ......+++.++++.+++..  +.+ ..+..
T Consensus        25 ~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~--~~~~~~v~~   99 (306)
T 2p4o_A           25 ITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGW--NADSIPVVS   99 (306)
T ss_dssp             EEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEE--CTTSCEEEE
T ss_pred             eEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEec--cCCcceEEE
Confidence            3444332 45678999999998888778899999997653 3333322 23467788988887444332  112 24666


Q ss_pred             EEccCCceEEEeee-cccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee-eee----e---e-ec--CceeEEECCCC
Q 021648           83 LSLHDNKYLRYFKG-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGL----L---R-VQ--GRPAAAYDDQG  150 (309)
Q Consensus        83 ~d~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~-~~~----~---~-~~--~~~~~~~~~~~  150 (309)
                      +|..+++....... .......++..+++..+++-..++.|..+|...++. ...    +   . ..  ..+.-. ++++
T Consensus       100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-s~dg  178 (306)
T 2p4o_A          100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-KRFG  178 (306)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-EEET
T ss_pred             EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-CcCC
Confidence            67777764332221 122345555555555566666688888888765421 100    0   0 00  011222 3344


Q ss_pred             cEEEEE--ECCEEEEEECCC-CCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCC
Q 021648          151 LVFAVA--FGGYIRMFDARK-YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  227 (309)
Q Consensus       151 ~~~~~~--~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  227 (309)
                      ..+..+  ..+.|..|++.. ........+...   .....++++++|+++++....+.|.++|.. ++........ ..
T Consensus       179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~-~~  253 (306)
T 2p4o_A          179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-QG  253 (306)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-GT
T ss_pred             CEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-cc
Confidence            333333  357899999763 111112222211   224568899999998888888999999975 6553321211 12


Q ss_pred             CCccceEEEC---CCCCEEEEEcCCC
Q 021648          228 RNSTLEASFS---PEGMFVISGSGDG  250 (309)
Q Consensus       228 ~~~~~~~~~s---p~g~~l~s~s~Dg  250 (309)
                      .....+++|.   ||+++|+.++..+
T Consensus       254 ~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          254 VIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cCCceEEEEecccCCCCEEEEECCCC
Confidence            2346789998   8988777765543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.78  E-value=1.8e-06  Score=70.44  Aligned_cols=189  Identities=13%  Similarity=0.013  Sum_probs=122.7

Q ss_pred             CEEEEEecCCCCeEEEecCCC--cEEEeeCCCceeeeeeeecCce---eEEECCCCcEEEEE-ECCEEEEEECCCCCcCC
Q 021648          100 RVVSLSLCSSKDCFISGSLDR--TVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFAVA-FGGYIRMFDARKYEKGP  173 (309)
Q Consensus       100 ~v~~v~~~~~~~~l~s~s~Dg--~v~~Wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~  173 (309)
                      ..-.+.|++ +....|.+.+|  .|+..|+++++....+.+....   ...... +.++.+. .++.+.+||..+++.  
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~--   97 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTP--   97 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEE--
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcE--
Confidence            466888886 56667777754  9999999999988777655432   223333 3444443 478999999876542  


Q ss_pred             ceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC--CCCccceEEECCCCCEEEEEcCCCc
Q 021648          174 FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--SRNSTLEASFSPEGMFVISGSGDGS  251 (309)
Q Consensus       174 ~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~sp~g~~l~s~s~Dg~  251 (309)
                      ...+...+  . -  ..+++|++.|..+..+++|+++|..+.+.+.+......  ....+..+.+. +|+.++....+..
T Consensus        98 ~~ti~~~~--~-G--wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~  171 (243)
T 3mbr_X           98 RARFRYPG--E-G--WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR  171 (243)
T ss_dssp             EEEEECSS--C-C--CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE
T ss_pred             EEEEeCCC--C-c--eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe
Confidence            12223222  1 1  23446777666666689999999999988887765321  11233445554 7777777767889


Q ss_pred             EEEEECCCCceEEEeecC------------C-CCCcEEEECCC-eeEEEEccceEEEeeec
Q 021648          252 VYAWSVRSGKEVASWMSF------------D-TEPPVIKWTPG-SLMFVTGSSELSFWIPD  298 (309)
Q Consensus       252 i~vwd~~~~~~~~~~~~~------------~-~~v~~l~~~p~-~~~l~s~~~d~~~~~~~  298 (309)
                      |.+.|.++++.+..+..-            . ...+.|||+|+ .++|++|-.=-+++...
T Consensus       172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~  232 (243)
T 3mbr_X          172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIR  232 (243)
T ss_dssp             EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEE
Confidence            999999999987775411            1 23477999996 56777776534444443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.77  E-value=2.9e-05  Score=64.48  Aligned_cols=220  Identities=7%  Similarity=0.012  Sum_probs=130.2

Q ss_pred             cceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648           12 GRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   90 (309)
Q Consensus        12 ~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~   90 (309)
                      ..+..++|++++. ++++-...+.|..+|.+++.....+.........+++.+++..++++..  ..+.|.++++.....
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS--QLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC--CCCEEEEEEcCCCCE
Confidence            3456899998654 5556666789999998765433333222235678889888777777653  257899999865432


Q ss_pred             EEEeeecccCEEEEEecCCCCeE-EEecC--CCcEEEeeCCCceeeeeee--ecCceeEEECCCC-cEEEEE-ECCEEEE
Q 021648           91 LRYFKGHHDRVVSLSLCSSKDCF-ISGSL--DRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQG-LVFAVA-FGGYIRM  163 (309)
Q Consensus        91 ~~~~~~h~~~v~~v~~~~~~~~l-~s~s~--Dg~v~~Wd~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~-~~~~i~~  163 (309)
                      .............+++.|++..| ++...  .+.|..+++..........  ...-...++++++ .++.+. ..+.|..
T Consensus       114 ~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~  193 (267)
T 1npe_A          114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (267)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence            22222223567899999965544 44433  3678887765432211111  1112234566544 343333 3578999


Q ss_pred             EECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648          164 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  241 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~  241 (309)
                      +|+.....  .....  + ......++.. ++.++++...++.|.++|..+++.+.++...  .......+++.|++.
T Consensus       194 ~~~~g~~~--~~~~~--~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g--~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          194 LNPAQPGR--RKVLE--G-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH--KQTRLYGITIALSQC  263 (267)
T ss_dssp             EETTEEEE--EEEEE--C-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCS--SCCCCCCEEEECSCC
T ss_pred             EecCCCce--EEEec--C-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccc--cccccceeeecCccC
Confidence            98753211  11111  1 1223456654 4566666667899999999999888776532  112356688888764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.74  E-value=2.8e-06  Score=80.37  Aligned_cols=191  Identities=17%  Similarity=0.142  Sum_probs=111.2

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeeccccc----------e-eEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYG----------V-DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL   91 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~   91 (309)
                      +..+..++.++.|.-+|..+|+.+..+......          + ..+++  .+..+++++.   |+.+..+|.++|+.+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~---dg~l~alD~~tG~~~  140 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL---DGRLIALDAKTGKAI  140 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT---TSEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcC---CCEEEEEECCCCCEe
Confidence            456677778999999999999998776533210          0 11122  2445666543   789999999999998


Q ss_pred             EEeeecc----cCEEEEEecCCCCeEEEecC------CCcEEEeeCCCceeeeeeeec-Cc-------------------
Q 021648           92 RYFKGHH----DRVVSLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLLRVQ-GR-------------------  141 (309)
Q Consensus        92 ~~~~~h~----~~v~~v~~~~~~~~l~s~s~------Dg~v~~Wd~~~~~~~~~~~~~-~~-------------------  141 (309)
                      ..+....    ..+.+--...++ .++.+..      ++.|..+|.++++........ ..                   
T Consensus       141 W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g  219 (668)
T 1kv9_A          141 WSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG  219 (668)
T ss_dssp             EEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred             eeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence            8876521    111110001134 4444432      689999999999877655321 00                   


Q ss_pred             -------------eeEEECCCCcEEEEE-ECC-------------------EEEEEECCCCCcCCceEEEeCCCC-----
Q 021648          142 -------------PAAAYDDQGLVFAVA-FGG-------------------YIRMFDARKYEKGPFDIFSVGGDI-----  183 (309)
Q Consensus       142 -------------~~~~~~~~~~~~~~~-~~~-------------------~i~~~d~~~~~~~~~~~~~~~~~~-----  183 (309)
                                   ....+++...++..+ .++                   .|..+|.++.+.. . .+....+.     
T Consensus       220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~-W-~~~~~~~~~wd~~  297 (668)
T 1kv9_A          220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA-W-HYQVTPGDSWDFT  297 (668)
T ss_dssp             SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE-E-EEESSTTCCSCCC
T ss_pred             cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCcee-e-EeecCCCcccccc
Confidence                         013455443333333 333                   3788887654321 0 11111111     


Q ss_pred             --CCCeEEEEccCCC---EEEEEeCCCcEEEEECCCCeEeEEe
Q 021648          184 --SDANVVKFSNDGR---LMLLTTMEGHIHVLDSFRGTLLSTY  221 (309)
Q Consensus       184 --~~~~~v~~s~dg~---~l~~~~~dg~v~i~d~~~~~~~~~~  221 (309)
                        .+.....+..+|+   .++.++.+|.++++|..+|+++...
T Consensus       298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence              1222233344775   6888899999999999999988543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.71  E-value=2.6e-05  Score=72.37  Aligned_cols=193  Identities=11%  Similarity=0.088  Sum_probs=108.4

Q ss_pred             CCEEEEeeC-CCcEEEEEc-CCCceeeeeecccc-ce----------eEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648           23 SSYLVTASD-DESIRLYDV-TAATCLKTINSKKY-GV----------DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   89 (309)
Q Consensus        23 ~~~l~t~s~-D~~v~iWd~-~~~~~~~~~~~~~~-~v----------~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~   89 (309)
                      +..+..++. ++.|.-.|. .+|+.+..+..... .+          ...+.  .+..++.++.   |+.+..+|.++|+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~---dg~l~alD~~tG~  136 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA---NGHLLALDAKTGK  136 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT---TSEEEEEETTTCC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC---CCEEEEEECCCCC
Confidence            345555666 899999999 89998866543221 00          11122  2445666543   7889999999999


Q ss_pred             eEEEeeecc--c--CEEEEEecCCCCeEEEecC------CCcEEEeeCCCceeeeeeeecCc------------------
Q 021648           90 YLRYFKGHH--D--RVVSLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLLRVQGR------------------  141 (309)
Q Consensus        90 ~~~~~~~h~--~--~v~~v~~~~~~~~l~s~s~------Dg~v~~Wd~~~~~~~~~~~~~~~------------------  141 (309)
                      .+..+....  .  .+.+--...++ .++.++.      |+.|..+|.++++..........                  
T Consensus       137 ~~W~~~~~~~~~~~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G  215 (571)
T 2ad6_A          137 INWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG  215 (571)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             EEEEecCCCCCccceeccCCEEECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence            887765321  1  12110001144 4444443      89999999999887655432210                  


Q ss_pred             ----------------------eeEEECCC-CcEEEEEEC----------------CEEEEEECCCCCcCCceEEEeCCC
Q 021648          142 ----------------------PAAAYDDQ-GLVFAVAFG----------------GYIRMFDARKYEKGPFDIFSVGGD  182 (309)
Q Consensus       142 ----------------------~~~~~~~~-~~~~~~~~~----------------~~i~~~d~~~~~~~~~~~~~~~~~  182 (309)
                                            ....+++. +.++....+                +.|..+|.++.+.. - .+....+
T Consensus       216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~-W-~~~~~~~  293 (571)
T 2ad6_A          216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAK-W-GYQKTPH  293 (571)
T ss_dssp             CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEE-E-EEESSTT
T ss_pred             ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEE-E-EecCCCC
Confidence                                  01233332 333332211                25778887654320 0 1111111


Q ss_pred             -------CCCCeEEEEccCCC---EEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648          183 -------ISDANVVKFSNDGR---LMLLTTMEGHIHVLDSFRGTLLSTYNV  223 (309)
Q Consensus       183 -------~~~~~~v~~s~dg~---~l~~~~~dg~v~i~d~~~~~~~~~~~~  223 (309)
                             ......+...++|+   .++.++.+|.++++|..+|+++-....
T Consensus       294 d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          294 DEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             CSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             cccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence                   11122233345784   577788899999999999998876543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.69  E-value=8.6e-06  Score=75.60  Aligned_cols=259  Identities=12%  Similarity=0.060  Sum_probs=149.8

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeecccc----ceeE-EEEecCCCEEEEEcCC---CCCceeEEEEccCCceEEEe
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKKY----GVDL-VCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRYF   94 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~~~~s~~---g~d~~i~~~d~~~~~~~~~~   94 (309)
                      +..+..++.|+.|..+|..+|+.+........    .+.. -..  .+..+++++..   +.++.+..+|.++|+.+..+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            45777788899999999999998866543221    1111 011  13455555432   12679999999999988876


Q ss_pred             eecccC-------------------------------------E-EEEEecCCCCeEEEecC------------C----C
Q 021648           95 KGHHDR-------------------------------------V-VSLSLCSSKDCFISGSL------------D----R  120 (309)
Q Consensus        95 ~~h~~~-------------------------------------v-~~v~~~~~~~~l~s~s~------------D----g  120 (309)
                      ......                                     + ..+++.++...+..+..            |    +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            532110                                     0 12344455455544432            2    3


Q ss_pred             cEEEeeCCCceeeeeeeecC----------ceeEEE-CCCC---cEE-EEEECCEEEEEECCCCCcCCceEEEeCC----
Q 021648          121 TVLLWDQRAEKCQGLLRVQG----------RPAAAY-DDQG---LVF-AVAFGGYIRMFDARKYEKGPFDIFSVGG----  181 (309)
Q Consensus       121 ~v~~Wd~~~~~~~~~~~~~~----------~~~~~~-~~~~---~~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~----  181 (309)
                      .|..+|.++++.....+...          .+...- ..++   .++ ....+|.+.++|..+.+.-  -...+..    
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~--w~~~~~~~~~w  350 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI--VAEKVDPAVNV  350 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE--EEEESSTTCCS
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEE--eeecccCCccc
Confidence            68999999988776654321          111111 1133   233 3344678888887654310  0001100    


Q ss_pred             ------CC---------------------------CCCeEEEEccCCCEEEEEe--------------------------
Q 021648          182 ------DI---------------------------SDANVVKFSNDGRLMLLTT--------------------------  202 (309)
Q Consensus       182 ------~~---------------------------~~~~~v~~s~dg~~l~~~~--------------------------  202 (309)
                            ..                           ..-..++++|+..++....                          
T Consensus       351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence                  00                           0012457888766665543                          


Q ss_pred             -----------CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCC
Q 021648          203 -----------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT  271 (309)
Q Consensus       203 -----------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~  271 (309)
                                 .+|.++.||+.+++.+-++....    .+....+...+..++.++.|+.+++||.++++.+.++.....
T Consensus       431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~----~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~  506 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF----AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG  506 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             eccCccccCCCCCCeEEEEECCCCCEEEEecCCC----CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence                       35789999999998876654321    112222333567788899999999999999999888754332


Q ss_pred             C-CcEEEECCCeeEEEEcc
Q 021648          272 E-PPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       272 ~-v~~l~~~p~~~~l~s~~  289 (309)
                      . -.-+.|.+++++++...
T Consensus       507 ~~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          507 GIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             CCSCCEEEEETTEEEEEEE
T ss_pred             cEeeeEEEEECCEEEEEEE
Confidence            1 22345667777665433

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.65  E-value=6.5e-05  Score=69.95  Aligned_cols=194  Identities=14%  Similarity=0.095  Sum_probs=110.1

Q ss_pred             CCEEEEeeC-CCcEEEEEc-CCCceeeeeeccccc-----------eeEEEEecCCCE----EEEEcCCCCCceeEEEEc
Q 021648           23 SSYLVTASD-DESIRLYDV-TAATCLKTINSKKYG-----------VDLVCFTSHPTT----VIYSSKNGWDESLRLLSL   85 (309)
Q Consensus        23 ~~~l~t~s~-D~~v~iWd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----~~~~s~~g~d~~i~~~d~   85 (309)
                      +..+..++. ++.|.-+|. .+|+.+..+......           ...+++.|.+..    ++.++.   |+.+..+|.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~---dg~l~AlDa  138 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL---DGNVAALNA  138 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---TSEEEEEET
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---CCEEEEEEC
Confidence            345556666 899999999 899988766533210           112344333333    666543   789999999


Q ss_pred             cCCceEEEeeeccc----CEEEEEecCCCCeEEEec------CCCcEEEeeCCCceeeeeeeecCce-------------
Q 021648           86 HDNKYLRYFKGHHD----RVVSLSLCSSKDCFISGS------LDRTVLLWDQRAEKCQGLLRVQGRP-------------  142 (309)
Q Consensus        86 ~~~~~~~~~~~h~~----~v~~v~~~~~~~~l~s~s------~Dg~v~~Wd~~~~~~~~~~~~~~~~-------------  142 (309)
                      ++|+.+........    .+.+--...++ .++.++      .++.|+.+|.++++...........             
T Consensus       139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~  217 (599)
T 1w6s_A          139 ETGETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN  217 (599)
T ss_dssp             TTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred             CCCCEEEeecCCCCCccceeecCCEEECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence            99998877653220    12111011144 444444      4899999999998876544322100             


Q ss_pred             ---------------------------eEEECCC-CcEEEEEEC----------------CEEEEEECCCCCcCCceEEE
Q 021648          143 ---------------------------AAAYDDQ-GLVFAVAFG----------------GYIRMFDARKYEKGPFDIFS  178 (309)
Q Consensus       143 ---------------------------~~~~~~~-~~~~~~~~~----------------~~i~~~d~~~~~~~~~~~~~  178 (309)
                                                 ...+++. +.++....+                +.|..+|.++.+.. - .+.
T Consensus       218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~-W-~~q  295 (599)
T 1w6s_A          218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK-F-GYQ  295 (599)
T ss_dssp             GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE-E-EEE
T ss_pred             ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee-e-Eee
Confidence                                       1233333 333333322                36777777654321 0 111


Q ss_pred             eCCCC-------CCCeEEEEc-cCC---CEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648          179 VGGDI-------SDANVVKFS-NDG---RLMLLTTMEGHIHVLDSFRGTLLSTYN  222 (309)
Q Consensus       179 ~~~~~-------~~~~~v~~s-~dg---~~l~~~~~dg~v~i~d~~~~~~~~~~~  222 (309)
                      ...+.       .....+... .+|   +.++.++.+|.++++|..+|+++-...
T Consensus       296 ~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          296 KTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             SSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            11110       111222232 578   567778899999999999999887654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.63  E-value=6.4e-05  Score=70.00  Aligned_cols=252  Identities=10%  Similarity=0.075  Sum_probs=144.7

Q ss_pred             EEEeeCCCcEEEEEcCCCceeeeeeccc----cceeE-EEEecCCCEEEEEcCC---CCCceeEEEEccCCceEEEeeec
Q 021648           26 LVTASDDESIRLYDVTAATCLKTINSKK----YGVDL-VCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRYFKGH   97 (309)
Q Consensus        26 l~t~s~D~~v~iWd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~~~~~s~~---g~d~~i~~~d~~~~~~~~~~~~h   97 (309)
                      +..++.|+.|.-+|..+|+.+.......    ..+.. -.+  .+..+++++..   +.++.|+.+|.++|+.+..+...
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE--ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            7788899999999999999876654322    11111 011  12345554321   13689999999999988877532


Q ss_pred             ccC-------------------------------------EE-EEEecCCCCeEEEecCC----------------CcEE
Q 021648           98 HDR-------------------------------------VV-SLSLCSSKDCFISGSLD----------------RTVL  123 (309)
Q Consensus        98 ~~~-------------------------------------v~-~v~~~~~~~~l~s~s~D----------------g~v~  123 (309)
                      ...                                     ++ ...+.++...+..+..+                +.|.
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            211                                     11 22344555566555444                4899


Q ss_pred             EeeCCCceeeeeeeecCc----------eeEEE-C-CCC---cEEE-EEECCEEEEEECCCCCcCCceEEEeCC------
Q 021648          124 LWDQRAEKCQGLLRVQGR----------PAAAY-D-DQG---LVFA-VAFGGYIRMFDARKYEKGPFDIFSVGG------  181 (309)
Q Consensus       124 ~Wd~~~~~~~~~~~~~~~----------~~~~~-~-~~~---~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~------  181 (309)
                      .+|.++++.....+....          +...- . .++   .++. ...+|.+.++|.++.+.-  -......      
T Consensus       282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l--w~~~~~~~~~~~~  359 (599)
T 1w6s_A          282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV--SANKLDDTVNVFK  359 (599)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE--EEEESSTTCCSEE
T ss_pred             EEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe--ecccccCCccccc
Confidence            999999987766544321          11211 1 234   2333 445788988887654310  0000000      


Q ss_pred             ----CC---------------------------CCCeEEEEccCCCEEEEEe----------------------------
Q 021648          182 ----DI---------------------------SDANVVKFSNDGRLMLLTT----------------------------  202 (309)
Q Consensus       182 ----~~---------------------------~~~~~v~~s~dg~~l~~~~----------------------------  202 (309)
                          ..                           ..-..++++|+..++....                            
T Consensus       360 ~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  439 (599)
T 1w6s_A          360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMY  439 (599)
T ss_dssp             EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             ccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceec
Confidence                00                           0112346676655543321                            


Q ss_pred             -----------CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCC
Q 021648          203 -----------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT  271 (309)
Q Consensus       203 -----------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~  271 (309)
                                 ..|.+.-||+.+++.+=+.....    +...-.....+..++.++.|+.++.||.++++.+-++....+
T Consensus       440 ~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g  515 (599)
T 1w6s_A          440 PGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF----AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG  515 (599)
T ss_dssp             ECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC----CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence                       34788899999988765443211    111111223667788899999999999999999887754332


Q ss_pred             CC-cEEEECCCeeEE
Q 021648          272 EP-PVIKWTPGSLMF  285 (309)
Q Consensus       272 ~v-~~l~~~p~~~~l  285 (309)
                      .. .-+.|..+|++.
T Consensus       516 ~~~~P~~y~~~G~qy  530 (599)
T 1w6s_A          516 AIGYPMTYTHKGTQY  530 (599)
T ss_dssp             CCSCCEEEEETTEEE
T ss_pred             cEeccEEEEeCCEEE
Confidence            22 235666777654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.63  E-value=0.00012  Score=70.53  Aligned_cols=275  Identities=11%  Similarity=0.050  Sum_probs=155.8

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec-------cccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648           12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-------KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      ..|.++..+++|.+.+.. .+ -+.+||..+++.......       ....|..+....++. +..+..   .+-+.++|
T Consensus       211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~---~~Gl~~~~  284 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATE---LNGIMILD  284 (781)
T ss_dssp             SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEES---SSCEEEEE
T ss_pred             CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeC---CCCeEEEC
Confidence            468899999988776544 34 688999876654322111       123466666555554 333332   23478888


Q ss_pred             ccCCceEEEee--------------ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeee-----------ec
Q 021648           85 LHDNKYLRYFK--------------GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-----------VQ  139 (309)
Q Consensus        85 ~~~~~~~~~~~--------------~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~-----------~~  139 (309)
                      ..+++......              -....|.++...++++ |..|+.++-|..++...........           ..
T Consensus       285 ~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  363 (781)
T 3v9f_A          285 LQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNK  363 (781)
T ss_dssp             TTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSS
T ss_pred             CCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCc
Confidence            87665322111              1345788888877775 6667777788888876544322110           01


Q ss_pred             CceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeE
Q 021648          140 GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS  219 (309)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~  219 (309)
                      .......+.++.+..+..++.+..||........+. .........+.++...++|.+.+ |+.++-+..+|..++....
T Consensus       364 ~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~  441 (781)
T 3v9f_A          364 VVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNK-ENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQI  441 (781)
T ss_dssp             CEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEE
T ss_pred             ceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEcc-CCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEE
Confidence            122334455677777776777888886532111110 00011224577788888887655 5666678889987765432


Q ss_pred             EeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC-----CCCCcEEEECCCeeEEEEcc-ceEE
Q 021648          220 TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-----DTEPPVIKWTPGSLMFVTGS-SELS  293 (309)
Q Consensus       220 ~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-----~~~v~~l~~~p~~~~l~s~~-~d~~  293 (309)
                       +.........+.++...++|+..+.. . +.+..+|..+++........     ...|.++...+++++.+... ..+.
T Consensus       442 -~~~~~~~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~  518 (781)
T 3v9f_A          442 -IELEKNELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVG  518 (781)
T ss_dssp             -CCSTTTCCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEE
T ss_pred             -eccCCCCCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEE
Confidence             22111233567777788888765544 4 55999998876543221111     34577888888887655443 4455


Q ss_pred             Eeeec
Q 021648          294 FWIPD  298 (309)
Q Consensus       294 ~~~~~  298 (309)
                      .+.++
T Consensus       519 ~~~~~  523 (781)
T 3v9f_A          519 IYTPD  523 (781)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            55544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.62  E-value=0.00015  Score=67.34  Aligned_cols=259  Identities=14%  Similarity=0.154  Sum_probs=146.6

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCceeeeeecccc----cee-EEEEecC---CC-EEEEEcCC---CCCceeEEEEccCCce
Q 021648           23 SSYLVTASDDESIRLYDVTAATCLKTINSKKY----GVD-LVCFTSH---PT-TVIYSSKN---GWDESLRLLSLHDNKY   90 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~----~v~-~~~~~~~---~~-~~~~~s~~---g~d~~i~~~d~~~~~~   90 (309)
                      +..+..++.|+.|.-.|..+|+.+........    .+. .-.+..+   ++ .+++++..   +.++.+..+|.++|+.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            45677788999999999999998866543221    111 1111111   22 44444321   2367899999999998


Q ss_pred             EEEeeecccCE-----------------------------------------EEEEecCCCCeEEEecC-----------
Q 021648           91 LRYFKGHHDRV-----------------------------------------VSLSLCSSKDCFISGSL-----------  118 (309)
Q Consensus        91 ~~~~~~h~~~v-----------------------------------------~~v~~~~~~~~l~s~s~-----------  118 (309)
                      +.........+                                         ...++.|+...+..+..           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            87654211000                                         01234455555544331           


Q ss_pred             ---------C----CcEEEeeCCCceeeeeeeecC----------ceeEEEC--CCC----cEEEEEECCEEEEEECCCC
Q 021648          119 ---------D----RTVLLWDQRAEKCQGLLRVQG----------RPAAAYD--DQG----LVFAVAFGGYIRMFDARKY  169 (309)
Q Consensus       119 ---------D----g~v~~Wd~~~~~~~~~~~~~~----------~~~~~~~--~~~----~~~~~~~~~~i~~~d~~~~  169 (309)
                               |    +.|..+|.++++.....+...          .+.....  .++    .++....+|.++++|.++.
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG  356 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG  356 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence                     3    689999999998876654321          1122211  233    2344446789999987653


Q ss_pred             CcCCceEEEeCC---------------------CC----------------------CCCeEEEEccCCCEEEEEe----
Q 021648          170 EKGPFDIFSVGG---------------------DI----------------------SDANVVKFSNDGRLMLLTT----  202 (309)
Q Consensus       170 ~~~~~~~~~~~~---------------------~~----------------------~~~~~v~~s~dg~~l~~~~----  202 (309)
                      +.-  -.+....                     ..                      ..-..++++|+...+....    
T Consensus       357 ~~l--w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~  434 (582)
T 1flg_A          357 KLQ--NAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK  434 (582)
T ss_dssp             CEE--EEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred             CEe--cccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence            310  0000000                     00                      0011345666544433322    


Q ss_pred             -----------------------------CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEE
Q 021648          203 -----------------------------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY  253 (309)
Q Consensus       203 -----------------------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~  253 (309)
                                                   .+|.++-||+.+++.+=+.....    ....-.....+..++.|+.|+.++
T Consensus       435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~g~~dg~l~  510 (582)
T 1flg_A          435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFK  510 (582)
T ss_dssp             EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEE
T ss_pred             eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC----CCcccceEeCCCEEEEECCCCcEE
Confidence                                         25789999999998775444321    111111222567788899999999


Q ss_pred             EEECCCCceEEEeecCCCCC-cEEEECCCeeEEEE
Q 021648          254 AWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVT  287 (309)
Q Consensus       254 vwd~~~~~~~~~~~~~~~~v-~~l~~~p~~~~l~s  287 (309)
                      .||.++++.+-.+..-.+.. .-+.|..+|++.+.
T Consensus       511 A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          511 AFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence            99999999998876533222 22667778875544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.62  E-value=0.00016  Score=69.54  Aligned_cols=274  Identities=11%  Similarity=0.043  Sum_probs=162.1

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec----------cccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS----------KKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      ...|.++..+++|.+- .|..++-|..++..++.... +..          ....|..++...++. +..+..   ++-+
T Consensus       312 ~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~---~~Gl  385 (781)
T 3v9f_A          312 NASARYIFQDSFNNIW-IGTWGGGINFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTD---GGGI  385 (781)
T ss_dssp             SSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTTSC-EEEEEB---SSCE
T ss_pred             CCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCccee-eccCccccccCCCCCcceEEEEEcCCCC-EEEEeC---CCcE
Confidence            4579999999988654 45667888889876543222 211          123466666655554 333332   2347


Q ss_pred             EEEEccCCceEEEe---eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeee--ec--CceeEEECCCCcEE
Q 021648           81 RLLSLHDNKYLRYF---KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQ--GRPAAAYDDQGLVF  153 (309)
Q Consensus        81 ~~~d~~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~--~~--~~~~~~~~~~~~~~  153 (309)
                      ..+|..+++.....   ......|.++...++++ |..|+.++-+..+|.++++......  ..  .......+.++.+.
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw  464 (781)
T 3v9f_A          386 NVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW  464 (781)
T ss_dssp             EEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE
T ss_pred             EEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE
Confidence            88887654332211   12346788888777775 4446666778888887665433211  11  11223445566666


Q ss_pred             EEEECCEEEEEECCCCCcCCceEEEeCC----CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee-cCCCC
Q 021648          154 AVAFGGYIRMFDARKYEKGPFDIFSVGG----DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-KPVSR  228 (309)
Q Consensus       154 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~----~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~~  228 (309)
                      .+.. +.+..+|....+   +..+....    ....+.++...++|++.+....+| +..+|..++.... +.. .....
T Consensus       465 igt~-~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~-~~~~~~l~~  538 (781)
T 3v9f_A          465 IGTH-AGVFVIDLASKK---VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK-FNQYEGFCS  538 (781)
T ss_dssp             EEET-TEEEEEESSSSS---CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE-ECTTTTCSC
T ss_pred             EEEC-CceEEEeCCCCe---EEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE-ccCCCCCCC
Confidence            6555 678889876432   22221111    124578888899998765543344 7778887665433 321 12234


Q ss_pred             CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeec---C-CCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS---F-DTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~---~-~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      ..+.++...++|+..++.. +|-+..||..+++. ..+..   . ...+.++...++|++.+++...+..+.|+.
T Consensus       539 ~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~~~~  611 (781)
T 3v9f_A          539 NTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYITSK  611 (781)
T ss_dssp             SCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEEETTT
T ss_pred             CeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEEcCCceEEEECCC
Confidence            5677788888988766655 66549999877653 33321   1 235778888888888777766666666653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.57  E-value=0.00014  Score=61.70  Aligned_cols=219  Identities=12%  Similarity=0.040  Sum_probs=125.4

Q ss_pred             ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecC-CC-cEEEeeCCCcee
Q 021648           55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR-TVLLWDQRAEKC  132 (309)
Q Consensus        55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg-~v~~Wd~~~~~~  132 (309)
                      ....+++.++++ ++++..  .++.|..+|...+ ....+ .-...+.++++.++++.+++... ++ .|..+|..+++.
T Consensus        33 ~pegia~~~~g~-lyv~d~--~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           33 FLENLASAPDGT-IFVTNH--EVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CEEEEEECTTSC-EEEEET--TTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcceEEECCCCC-EEEEeC--CCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            356778888876 444332  2568888887653 33222 23356889999999986665543 23 466667666654


Q ss_pred             eeeeeecC---ceeEEECCCCcEEEEE-ECCEEEEEECCCCCcCCceEEE---------eCCCCCCCeEEEEccCCC-EE
Q 021648          133 QGLLRVQG---RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFS---------VGGDISDANVVKFSNDGR-LM  198 (309)
Q Consensus       133 ~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~v~~s~dg~-~l  198 (309)
                      ........   .......+.+.++... ..+.|..+|.....   ..+..         ........+.+  +||++ ++
T Consensus       108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~---~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly  182 (306)
T 2p4o_A          108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS---GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY  182 (306)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE---EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred             EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCc---EeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence            33222211   1122333444444443 36788888864311   01110         00111223444  88886 45


Q ss_pred             EEEeCCCcEEEEECCC-CeE--eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEE--EeecCCCCC
Q 021648          199 LLTTMEGHIHVLDSFR-GTL--LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA--SWMSFDTEP  273 (309)
Q Consensus       199 ~~~~~dg~v~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~--~~~~~~~~v  273 (309)
                      ++-...+.|+.||... +..  ...+..    ......+++.++|+.+++-...+.|.++|.. ++...  .+...-..+
T Consensus       183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p  257 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGS  257 (306)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTE
T ss_pred             EEeCCCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCc
Confidence            6666788999999864 322  111111    0223468999999988888888899999975 55422  232222467


Q ss_pred             cEEEEC---CCe-eEEEEc
Q 021648          274 PVIKWT---PGS-LMFVTG  288 (309)
Q Consensus       274 ~~l~~~---p~~-~~l~s~  288 (309)
                      ++++|.   |++ .++++.
T Consensus       258 ~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          258 TAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             EEEEECCSTTTTTEEEEEE
T ss_pred             eEEEEecccCCCCEEEEEC
Confidence            899998   885 455554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.56  E-value=6.1e-05  Score=64.36  Aligned_cols=227  Identities=14%  Similarity=0.071  Sum_probs=129.8

Q ss_pred             eeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeee--------------------cccCEEEEEecC-CCCeEE
Q 021648           56 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG--------------------HHDRVVSLSLCS-SKDCFI  114 (309)
Q Consensus        56 v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~--------------------h~~~v~~v~~~~-~~~~l~  114 (309)
                      ...+++.++++.+++...   ++.|..||..+++.. .+..                    ....+.++++.+ +++.++
T Consensus        21 p~~i~~d~~g~~l~v~~~---~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v   96 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQ---DGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI   96 (322)
T ss_dssp             CCCEECCTTCSSEEEECT---TSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred             ceEEEEcCCCCEEEEEcC---CCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence            456777777764555432   567888888765432 2221                    123578899997 665444


Q ss_pred             EecCCCcEEEeeCCCceeeeeee-ec-----CceeEEECC-CCcEEEEEEC------------------CEEEEEECCCC
Q 021648          115 SGSLDRTVLLWDQRAEKCQGLLR-VQ-----GRPAAAYDD-QGLVFAVAFG------------------GYIRMFDARKY  169 (309)
Q Consensus       115 s~s~Dg~v~~Wd~~~~~~~~~~~-~~-----~~~~~~~~~-~~~~~~~~~~------------------~~i~~~d~~~~  169 (309)
                      + ...+.+..+|..++....... ..     .-......+ ++.++.+...                  +.|..+|....
T Consensus        97 ~-d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           97 V-DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             E-ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             E-ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            4 334558888876553221111 11     112345566 6665554422                  56777776432


Q ss_pred             CcCCceEEEeCCCCCCCeEEEEccCCCE-EEEEeCCCcEEEEECCCCe--EeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648          170 EKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGT--LLSTYNVKPVSRNSTLEASFSPEGMFVISG  246 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~v~~s~dg~~-l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~  246 (309)
                      +   ......  .....+.++++|+|+. +++-..++.|.+||.....  ....+...   .. ...+++.++|+.+++.
T Consensus       176 ~---~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          176 E---TTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             E---EEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEEE
T ss_pred             E---EEEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEEe
Confidence            1   111111  1123467899999985 4555677899999986421  11122111   12 4568999999877776


Q ss_pred             cC----------CCcEEEEECCCCceEEEeecCC----CCCcEEEECCCeeEEEEccceEEEeeec
Q 021648          247 SG----------DGSVYAWSVRSGKEVASWMSFD----TEPPVIKWTPGSLMFVTGSSELSFWIPD  298 (309)
Q Consensus       247 s~----------Dg~i~vwd~~~~~~~~~~~~~~----~~v~~l~~~p~~~~l~s~~~d~~~~~~~  298 (309)
                      ..          .+.|..+|. .++.+..+....    ..++.+++ .+++++++.....++...+
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~  310 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV  310 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred             cCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence            54          467888887 467666664332    24666776 4677777755544444333

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.37  E-value=0.00074  Score=60.33  Aligned_cols=240  Identities=10%  Similarity=0.048  Sum_probs=135.3

Q ss_pred             eEEEEeCCC---CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCC-Cce-eEEEEccCC
Q 021648           14 ISSMDFHKS---SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW-DES-LRLLSLHDN   88 (309)
Q Consensus        14 V~~i~~s~~---~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~-d~~-i~~~d~~~~   88 (309)
                      ...|+|+|+   +++.++- ..+.|+.+|..+++....+. .......+++.++++ ++++...+. +.. +...+...+
T Consensus       141 P~gvavd~~s~~g~Lyv~D-~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVG-QRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCEEEECTTTTTCEEEEEC-BTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CceEEEccccCCCEEEEEe-CCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence            458999985   5554443 33899999998776554433 333467889999998 555432211 112 223333222


Q ss_pred             ce-EEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeee-eec---CceeEEECCCCcEEEEE--ECCE
Q 021648           89 KY-LRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQ---GRPAAAYDDQGLVFAVA--FGGY  160 (309)
Q Consensus        89 ~~-~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~--~~~~  160 (309)
                      .. ...+. .......+++.| +++..++-..++.|+.+|..++.....+ ...   ....+++++++..+..+  ..+.
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            11 11222 234456788888 6776767777889999998766542222 111   11236777777633333  3578


Q ss_pred             EEEEECCCCCc--C-CceEEEeCC------------CCCCCeEEEE---------ccCCCEEEEEeCCCcEEEEECCCCe
Q 021648          161 IRMFDARKYEK--G-PFDIFSVGG------------DISDANVVKF---------SNDGRLMLLTTMEGHIHVLDSFRGT  216 (309)
Q Consensus       161 i~~~d~~~~~~--~-~~~~~~~~~------------~~~~~~~v~~---------s~dg~~l~~~~~dg~v~i~d~~~~~  216 (309)
                      |+.++......  . +..+....+            .......+++         .++|.++++-..++.|+.++. .|.
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence            88887542110  0 001111000            1223456888         888999998888999999985 565


Q ss_pred             EeEEeeecC--------------CCCCccceEEEC-CCCCEEEEEcCCCcEEEEECC
Q 021648          217 LLSTYNVKP--------------VSRNSTLEASFS-PEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       217 ~~~~~~~~~--------------~~~~~~~~~~~s-p~g~~l~s~s~Dg~i~vwd~~  258 (309)
                      .........              ..-.....++++ ++|..+++=.....|+.++++
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            443221100              001234568888 566666655666677777653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.37  E-value=0.001  Score=61.74  Aligned_cols=108  Identities=13%  Similarity=0.095  Sum_probs=63.9

Q ss_pred             CEEEEeeCCCcEEEEEcCCCceeeeeeccccc-e--------eEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe
Q 021648           24 SYLVTASDDESIRLYDVTAATCLKTINSKKYG-V--------DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF   94 (309)
Q Consensus        24 ~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~-v--------~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~   94 (309)
                      ..+..++.++.|.-+|..+|+.+..+...... .        ...++  .+..+++++.   |+.+..+|.++|+.+..+
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~---dg~l~AlD~~TG~~~W~~  143 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTL---DASVVALNKNTGKVVWKK  143 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEET---TTEEEEEESSSCCEEEEE
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeC---CCEEEEEECCCCCEEeee
Confidence            34444445334888999999998766543211 0        11122  2445665543   778999999999988876


Q ss_pred             eeccc----CEEE-EEecC---CCC-eEEEec------CCCcEEEeeCCCceeeeee
Q 021648           95 KGHHD----RVVS-LSLCS---SKD-CFISGS------LDRTVLLWDQRAEKCQGLL  136 (309)
Q Consensus        95 ~~h~~----~v~~-v~~~~---~~~-~l~s~s------~Dg~v~~Wd~~~~~~~~~~  136 (309)
                      +....    .+.+ -.+..   +++ .++.++      .++.|..+|.++++.....
T Consensus       144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~  200 (582)
T 1flg_A          144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred             cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence            54321    1111 01111   223 555554      3889999999988876543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.35  E-value=0.00011  Score=70.52  Aligned_cols=115  Identities=10%  Similarity=0.137  Sum_probs=76.0

Q ss_pred             ceEEEEeC-CCCCEEEEeeC-C----CcEEEEEcCCC-ceee-eeeccccceeEEEEecCCCEEEEEcCCC--CCceeEE
Q 021648           13 RISSMDFH-KSSSYLVTASD-D----ESIRLYDVTAA-TCLK-TINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRL   82 (309)
Q Consensus        13 ~V~~i~~s-~~~~~l~t~s~-D----~~v~iWd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~g--~d~~i~~   82 (309)
                      .+...+|| |||++||=+.. +    .+|+++|+.++ +.+. .+..   ....++|+|+++.+++.+...  ....|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67789999 99998874332 2    35999999998 6332 1211   234678999999888876421  1146888


Q ss_pred             EEccCCce--EEEeee-cccCEEEEEecCCCCeEEEecC---CCcEEEeeCCCc
Q 021648           83 LSLHDNKY--LRYFKG-HHDRVVSLSLCSSKDCFISGSL---DRTVLLWDQRAE  130 (309)
Q Consensus        83 ~d~~~~~~--~~~~~~-h~~~v~~v~~~~~~~~l~s~s~---Dg~v~~Wd~~~~  130 (309)
                      +++.+++.  +..+.. .......+.|+||+++|+..+.   ...|.++|+.++
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            88877642  333332 3345678899999998765542   346777888764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.32  E-value=0.0014  Score=57.58  Aligned_cols=255  Identities=11%  Similarity=0.002  Sum_probs=145.5

Q ss_pred             EEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe
Q 021648           15 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF   94 (309)
Q Consensus        15 ~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~   94 (309)
                      ++.+..+++ +|+-+ ....|+..++........+... .....+++.+....++++..  ..+.|..+++..+.....+
T Consensus        80 ~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~~-~~~~gl~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~~~~  154 (386)
T 3v65_B           80 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDV--TLDRILRANLNGSNVEEVV  154 (386)
T ss_dssp             CEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECSC-SCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCEEEEE
T ss_pred             eECCccccc-eeEee-cCccceeeccCCCcEEEEecCC-CccEEEEEecCCCeEEEEeC--CCCcEEEEecCCCCcEEEE
Confidence            344555533 33333 4467888888765444333332 24667888887778887753  2578999998876544444


Q ss_pred             eecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeec-Cc-eeEEECCCC-cEEEEEE-C-CEEEEEECCC
Q 021648           95 KGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-GR-PAAAYDDQG-LVFAVAF-G-GYIRMFDARK  168 (309)
Q Consensus        95 ~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-~~-~~~~~~~~~-~~~~~~~-~-~~i~~~d~~~  168 (309)
                      .........+++.+. ++..++-...+.|.+.++........+... .. ...+.++.+ .++.+.. . +.|..+++..
T Consensus       155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence            333345567888864 455566667788888887644322222111 11 234555443 3433332 3 5777777643


Q ss_pred             CCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEc
Q 021648          169 YEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  247 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s  247 (309)
                      ..    ............+.++++|++ +++++-...+.|..+|...... ..+...  .......+++ ..+..+.+-.
T Consensus       235 ~~----~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~--~~~~P~giav-~~~~ly~td~  306 (386)
T 3v65_B          235 SG----RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQ--GLPHPFAITV-FEDSLYWTDW  306 (386)
T ss_dssp             CS----CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECS--SCSSEEEEEE-ETTEEEEEET
T ss_pred             CC----cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEEC--CCCCceEEEE-ECCEEEEeeC
Confidence            21    111112223346789999755 5556666778899999754332 222111  1223456677 4556667777


Q ss_pred             CCCcEEEEECCCCceEEEeecCCCCCcEEE-ECCCe
Q 021648          248 GDGSVYAWSVRSGKEVASWMSFDTEPPVIK-WTPGS  282 (309)
Q Consensus       248 ~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~-~~p~~  282 (309)
                      ..+.|..++..+++.+..+...-..+..|+ ++|..
T Consensus       307 ~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~  342 (386)
T 3v65_B          307 HTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQR  342 (386)
T ss_dssp             TTTEEEEEETTTCCSCEEEECSCSCCCCEEEESGGG
T ss_pred             CCCeEEEEECCCCcceEEEccCCCCCceEEEEchhc
Confidence            788999999777776666554333444554 34443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=0.00085  Score=59.88  Aligned_cols=242  Identities=12%  Similarity=0.134  Sum_probs=134.8

Q ss_pred             ceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCC--CceeEEEEccCCc
Q 021648           13 RISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--DESLRLLSLHDNK   89 (309)
Q Consensus        13 ~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~--d~~i~~~d~~~~~   89 (309)
                      ....|+++| ++..|..+...+.|+.+|..++....... .......+++.++++.++++...+.  ...+.+.+.. +.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence            346889998 34445444444889999987665443333 3334677899999986666643211  1123334433 22


Q ss_pred             eE--EEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecC---ceeEEECCCCcEEEEE--ECCEE
Q 021648           90 YL--RYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVA--FGGYI  161 (309)
Q Consensus        90 ~~--~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~i  161 (309)
                      ..  ..+.. ......+++.| ++..+++-..++.|..+|+.............   -..+++++++..+..+  ..+.|
T Consensus       216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            21  23322 33457788999 67777777778899999987665422222211   2346778877644333  35788


Q ss_pred             EEEECCCCCc--C-CceEEEeCC------------CCCCCe-EEEEc--------cCCCEEEEEeCCCcEEEEECCCCeE
Q 021648          162 RMFDARKYEK--G-PFDIFSVGG------------DISDAN-VVKFS--------NDGRLMLLTTMEGHIHVLDSFRGTL  217 (309)
Q Consensus       162 ~~~d~~~~~~--~-~~~~~~~~~------------~~~~~~-~v~~s--------~dg~~l~~~~~dg~v~i~d~~~~~~  217 (309)
                      ..++......  . ...+....+            ...... .++..        ++|.++++-..++.|+.++. .|..
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v  373 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRV  373 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEE
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcE
Confidence            8887542100  0 000111000            011122 45553        45788888888889999984 5654


Q ss_pred             eEEeeec----CC----------CCCccceEEECCC-CCEEEEEcCCCcEEEEECC
Q 021648          218 LSTYNVK----PV----------SRNSTLEASFSPE-GMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       218 ~~~~~~~----~~----------~~~~~~~~~~sp~-g~~l~s~s~Dg~i~vwd~~  258 (309)
                      .......    ..          .-.....++++|+ |..+++-.....|+.++++
T Consensus       374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            4332210    00          0123567889985 5555555666778777653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.26  E-value=0.0018  Score=56.09  Aligned_cols=257  Identities=11%  Similarity=0.014  Sum_probs=145.7

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648           12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL   91 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~   91 (309)
                      ...+|....+++.++++  ....|+..++........+... .....+++.+....++++..  ..+.|..+++..+...
T Consensus        34 d~~~C~~~~~~~~ll~~--~~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~  108 (349)
T 3v64_C           34 DRRSCKALGPEPVLLFA--NRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDV--TLDRILRANLNGSNVE  108 (349)
T ss_dssp             TSSCEEESSSCCEEEEE--CBSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCE
T ss_pred             CCCcccccccCceeEee--cccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEec--cCCceEEEecCCCCce
Confidence            34456666664434433  3456888887654443333332 23567888887778887753  2578999998876544


Q ss_pred             EEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeee--cCceeEEECCC-CcEEEEEE-C-CEEEEEE
Q 021648           92 RYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRV--QGRPAAAYDDQ-GLVFAVAF-G-GYIRMFD  165 (309)
Q Consensus        92 ~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~-~-~~i~~~d  165 (309)
                      ..+........++++.+. ++..++-...+.|.+.++........+..  ..-...+.++. +.++-+.. . +.|..++
T Consensus       109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            433333345577888864 55566767778899998765432222211  11123455553 44443333 3 6788777


Q ss_pred             CCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEE
Q 021648          166 ARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  244 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~  244 (309)
                      +.....    ...........+.++++|++ +++++-...+.|..+|...... ..+...  .......+++ .++..+.
T Consensus       189 ~dG~~~----~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~--~~~~P~giav-~~~~ly~  260 (349)
T 3v64_C          189 MDGSGR----RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQ--GLPHPFAITV-FEDSLYW  260 (349)
T ss_dssp             TTSCSC----EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECS--SCSSEEEEEE-ETTEEEE
T ss_pred             CCCCCc----EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeC--CCCCceEEEE-ECCEEEE
Confidence            643211    11111123345789999855 5555666678999999764332 222111  1123345677 3556666


Q ss_pred             EEcCCCcEEEEECCCCceEEEeecCCCCCcEEE-ECCC
Q 021648          245 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK-WTPG  281 (309)
Q Consensus       245 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~-~~p~  281 (309)
                      +-...+.|...+..+++.+..+...-..+..|+ ++|.
T Consensus       261 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~  298 (349)
T 3v64_C          261 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQ  298 (349)
T ss_dssp             EETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGG
T ss_pred             ecCCCCeEEEEEccCCCccEEeccCCCCCceEEEEccc
Confidence            667778899999767766555543323344444 3443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.11  E-value=0.00011  Score=69.25  Aligned_cols=230  Identities=10%  Similarity=0.044  Sum_probs=121.1

Q ss_pred             EEEEec-CCCEEEEEcCCCC--------CceeEEEEccCCceE--EEee-ecccCEEEEEecCCCCeEEEecC-CCcEEE
Q 021648           58 LVCFTS-HPTTVIYSSKNGW--------DESLRLLSLHDNKYL--RYFK-GHHDRVVSLSLCSSKDCFISGSL-DRTVLL  124 (309)
Q Consensus        58 ~~~~~~-~~~~~~~~s~~g~--------d~~i~~~d~~~~~~~--~~~~-~h~~~v~~v~~~~~~~~l~s~s~-Dg~v~~  124 (309)
                      .+++.+ +++.++++.....        ...+.+||+.+++-.  ..+. .+.....++++..+++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            455566 5555555432110        126889999887632  2221 23333445677789999999984 568999


Q ss_pred             eeCCCceeeeeeeecC---ceeEEECCCCcEEEEEE--C-----CEEEEEECCCCCcCCceEEEe---CCCCCCCeEEEE
Q 021648          125 WDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVAF--G-----GYIRMFDARKYEKGPFDIFSV---GGDISDANVVKF  191 (309)
Q Consensus       125 Wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~-----~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~v~~  191 (309)
                      ||+.+++....-.++.   .......+++.++..+.  +     ..+.+||..+.+   ......   ..-...-....+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~---W~~~~~~~~~p~~~~~~~~~~  346 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT---WTSLPNAKVNPMLTADKQGLY  346 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE---EEEETTSCSGGGCCCCTTGGG
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc---ceeCCCcccccccccccccee
Confidence            9998876554332221   12334443455554443  2     468889876421   111000   000000000112


Q ss_pred             ccCCCEEEEEeCCC---------cEEEEECCCCeEeEEeeecCC------CCCccceEEECC-CCCEEEEEcCCC-----
Q 021648          192 SNDGRLMLLTTMEG---------HIHVLDSFRGTLLSTYNVKPV------SRNSTLEASFSP-EGMFVISGSGDG-----  250 (309)
Q Consensus       192 s~dg~~l~~~~~dg---------~v~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~sp-~g~~l~s~s~Dg-----  250 (309)
                      ..+++.++.++.+|         .+..||..+............      ....-..+.|.+ +++.++.||.++     
T Consensus       347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~  426 (656)
T 1k3i_A          347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD  426 (656)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence            34556556665544         467788776654332221111      011123344543 788888888543     


Q ss_pred             ------cEEEEECCCCceEEEe--e-cCCCCCcEEEECCCeeEEEEccc
Q 021648          251 ------SVYAWSVRSGKEVASW--M-SFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       251 ------~i~vwd~~~~~~~~~~--~-~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                            .+.+||..+.+-....  . .....-.+.+..|++++++.|+.
T Consensus       427 ~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~  475 (656)
T 1k3i_A          427 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQ  475 (656)
T ss_dssp             CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCB
T ss_pred             cCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCc
Confidence                  6888888775543321  1 12222234566799999999874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=0.0054  Score=54.67  Aligned_cols=230  Identities=12%  Similarity=0.110  Sum_probs=124.5

Q ss_pred             eeEEEEec-CCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecC-CC----cEEEeeCCC
Q 021648           56 VDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR----TVLLWDQRA  129 (309)
Q Consensus        56 v~~~~~~~-~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg----~v~~Wd~~~  129 (309)
                      ...+++.| +...++++.. +  +.|+.+|++.++.. .+.........+++.+++++|..+.. ++    .+...+ ..
T Consensus       139 P~~lavdp~~~g~Lyv~d~-~--~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~  213 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGE-Q--HPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RE  213 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEB-T--EEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GG
T ss_pred             CCEEEECCCCCCeEEEEeC-C--CcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CC
Confidence            34677776 3455555542 2  68999998876543 33335567889999999995544433 22    233333 22


Q ss_pred             ceee--eeee-ecCceeEEECC-CCcEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCC-EEEEEeC
Q 021648          130 EKCQ--GLLR-VQGRPAAAYDD-QGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTM  203 (309)
Q Consensus       130 ~~~~--~~~~-~~~~~~~~~~~-~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~  203 (309)
                      +...  ..+. ...-...+.++ .+.++.+. ..+.|..++.......  .+..... ....+.++++|+|+ ++++-..
T Consensus       214 g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~-~~~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          214 SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQD-SGWEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSS-SSCCEEEEECTTSSEEEEEETT
T ss_pred             CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCC-CCcceeEEEcCCCCEEEEEECC
Confidence            3221  1111 11222355666 56665554 3578999987532110  1222221 23457899999999 5666677


Q ss_pred             CCcEEEEECCC--CeE--eEEeeecCC------------CCCccc-eEEEC--------CCCCEEEEEcCCCcEEEEECC
Q 021648          204 EGHIHVLDSFR--GTL--LSTYNVKPV------------SRNSTL-EASFS--------PEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       204 dg~v~i~d~~~--~~~--~~~~~~~~~------------~~~~~~-~~~~s--------p~g~~l~s~s~Dg~i~vwd~~  258 (309)
                      ++.|..++...  +..  ...+.....            .-.... .++..        ++|..+++=.....|+.++. 
T Consensus       291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-  369 (430)
T 3tc9_A          291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-  369 (430)
T ss_dssp             TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-
T ss_pred             CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-
Confidence            88999987642  322  111111100            001112 23442        34666666566778888883 


Q ss_pred             CCceEEEeecC-----C----C---------CCcEEEECC-CeeEEEEccceEEEe
Q 021648          259 SGKEVASWMSF-----D----T---------EPPVIKWTP-GSLMFVTGSSELSFW  295 (309)
Q Consensus       259 ~~~~~~~~~~~-----~----~---------~v~~l~~~p-~~~~l~s~~~d~~~~  295 (309)
                      +++ +.++.+.     .    +         .+..|++.| ++.++++-....++.
T Consensus       370 ~G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr  424 (430)
T 3tc9_A          370 QGR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIR  424 (430)
T ss_dssp             TSE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred             CCc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence            553 3333221     1    1         356799999 577776655444443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.05  E-value=0.0044  Score=52.73  Aligned_cols=227  Identities=13%  Similarity=0.080  Sum_probs=131.3

Q ss_pred             CCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC----CceEEEeeecccCEEEEEec
Q 021648           32 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----NKYLRYFKGHHDRVVSLSLC  107 (309)
Q Consensus        32 D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~----~~~~~~~~~h~~~v~~v~~~  107 (309)
                      ...|+..|+.+.+....+.... ....+++.+....++++..  .++.|..+++..    ......+........++++.
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~~~-~p~g~~~d~~~~~ly~~D~--~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd   85 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPNLR-NVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD   85 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECSCS-SEEEEEEETTTTEEEEEET--TTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             CCeEEEEECCCcceEehhcCCC-ceEEEEEEeCCCEEEEEEC--CCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEe
Confidence            3578888988766544443322 3567888887778887753  267899999876    22222232233456788887


Q ss_pred             CC-CCeEEEecCCCcEEEeeCCCceeeeeeeec-Cc-eeEEECC-CCcEEEEEEC--CEEEEEECCCCCcCCceEEEeCC
Q 021648          108 SS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-GR-PAAAYDD-QGLVFAVAFG--GYIRMFDARKYEKGPFDIFSVGG  181 (309)
Q Consensus       108 ~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~  181 (309)
                      +. ++..++-...+.|.+.|+........+... .. ...+.++ .+.++-+..+  +.|..+++....    .......
T Consensus        86 ~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~----~~~~~~~  161 (316)
T 1ijq_A           86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTE  161 (316)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----EEEEECS
T ss_pred             ecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC----eEEEEEC
Confidence            64 455566677889999998654333222211 12 2345555 4444444332  577777764211    1111122


Q ss_pred             CCCCCeEEEEccCCC-EEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCC
Q 021648          182 DISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       182 ~~~~~~~v~~s~dg~-~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~  260 (309)
                      .....+.++++|++. ++++-...+.|..+|... .....+............+++. .++.+.+-...+.|..++..++
T Consensus       162 ~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence            234567899998654 555556678999999864 3233332111111233456664 4666677777889999998777


Q ss_pred             ceEEEee
Q 021648          261 KEVASWM  267 (309)
Q Consensus       261 ~~~~~~~  267 (309)
                      +.+..+.
T Consensus       240 ~~~~~i~  246 (316)
T 1ijq_A          240 SDVNLLA  246 (316)
T ss_dssp             CCCEEEE
T ss_pred             cceEEEe
Confidence            7665554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.04  E-value=0.0036  Score=51.52  Aligned_cols=215  Identities=13%  Similarity=0.182  Sum_probs=123.0

Q ss_pred             eEecCCCcceEEEEeCCCCCEEE-EeeCCCcEEEEEcCCCceeeeeecc-ccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLV-TASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~-t~s~D~~v~iWd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      +.+.+=.+.++.++++|++..|. ....++.|...|.. ++.++.+... ......+++.+++.++++ +. + ++.+.+
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs-~E-~-~~~l~~   95 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVIS-DE-R-DYAIYV   95 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEE-ET-T-TTEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEE-EC-C-CCcEEE
Confidence            45556667899999999876554 45567788888887 8877776432 123556777766654443 32 2 567888


Q ss_pred             EEccCCceE---EEee------ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEE
Q 021648           83 LSLHDNKYL---RYFK------GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF  153 (309)
Q Consensus        83 ~d~~~~~~~---~~~~------~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (309)
                      +++.....+   ....      ......-++++.|+++.|..+.......+|.+. +.    ..  ..            
T Consensus        96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~-g~----~~--~~------------  156 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN-GL----LS--SN------------  156 (255)
T ss_dssp             EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE-ST----TC--SS------------
T ss_pred             EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc-cc----cc--CC------------
Confidence            887554322   2221      122345788898888777766655554555432 10    00  00            


Q ss_pred             EEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCeEeEEeeecCCC-----
Q 021648          154 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS-----  227 (309)
Q Consensus       154 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-----  227 (309)
                            .+.+.+....        .-.....+...+++.|. |++++.....+.+..+|.. +..+..+......     
T Consensus       157 ------~l~i~~~~~~--------~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~  221 (255)
T 3qqz_A          157 ------ELHISKDKAL--------QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSH  221 (255)
T ss_dssp             ------CCEEEECHHH--------HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSS
T ss_pred             ------ceeeecchhh--------ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCccc
Confidence                  0011000000        00011234578888885 5666667777888888864 6666655543211     


Q ss_pred             -CCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648          228 -RNSTLEASFSPEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       228 -~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~  258 (309)
                       ....-.++|.|+|+.++ +++-..++++.-.
T Consensus       222 ~~~qpEGia~d~~G~lyI-vsE~n~~y~f~~~  252 (255)
T 3qqz_A          222 NIKQAEGVAMDASGNIYI-VSEPNRFYRFTPQ  252 (255)
T ss_dssp             CCCSEEEEEECTTCCEEE-EETTTEEEEEEC-
T ss_pred             ccCCCCeeEECCCCCEEE-EcCCceEEEEEec
Confidence             01223589999998544 4777777777653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.00  E-value=0.013  Score=56.32  Aligned_cols=210  Identities=8%  Similarity=0.026  Sum_probs=112.8

Q ss_pred             CcceEEEEeCCC-CCEEEEeeCCCcEEEEEcCCC----ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648           11 NGRISSMDFHKS-SSYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus        11 ~~~V~~i~~s~~-~~~l~t~s~D~~v~iWd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      -..+.+|+|++. +.++.+-...+.|+.+++...    .....+...-.....+++.+.+..++++..  ..+.|.+.++
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~--~~~~I~v~~l  500 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVADT  500 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET--TTTEEEEEET
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEec--CCCeEEEEeC
Confidence            345668889884 445566666778888888642    222223322334567888888878887753  2678999998


Q ss_pred             cCCceEEEeeecccCEEEEEecCCCC-eEEEecC-CCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEE
Q 021648           86 HDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRM  163 (309)
Q Consensus        86 ~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~-Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (309)
                      ........+.......++|++.|.+. +++|-.. .+.|...++........+                           
T Consensus       501 dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv---------------------------  553 (791)
T 3m0c_C          501 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---------------------------  553 (791)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE---------------------------
T ss_pred             CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE---------------------------
Confidence            76544333344456688899988644 4444322 244555444322110000                           


Q ss_pred             EECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE
Q 021648          164 FDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  242 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  242 (309)
                                      .......+.|++++.+ +++++-...+.|..+|+........... .........+++.. ++.
T Consensus       554 ----------------~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~-~~~l~~P~glav~~-~~l  615 (791)
T 3m0c_C          554 ----------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVFE-DKV  615 (791)
T ss_dssp             ----------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-TTTTSSEEEEEEET-TEE
T ss_pred             ----------------eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC-CCccCCCCEEEEeC-CEE
Confidence                            0011234567777544 4444445566788887653332222211 11112233455532 344


Q ss_pred             EEEEcCCCcEEEEECCCCceEEEee
Q 021648          243 VISGSGDGSVYAWSVRSGKEVASWM  267 (309)
Q Consensus       243 l~s~s~Dg~i~vwd~~~~~~~~~~~  267 (309)
                      +++-...+.|...|..+++.+..+.
T Consensus       616 YwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          616 FWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             EEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEECCCCEEEEEeCCCCcceEEee
Confidence            4455666788888877776655543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.99  E-value=0.0073  Score=53.25  Aligned_cols=228  Identities=12%  Similarity=0.068  Sum_probs=132.6

Q ss_pred             CCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC----ceEEEeeecccCEEEEEe
Q 021648           31 DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN----KYLRYFKGHHDRVVSLSL  106 (309)
Q Consensus        31 ~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~----~~~~~~~~h~~~v~~v~~  106 (309)
                      ....|+..|+........+.. ...+..++|.+....++++...  .+.|+.+++...    .....+........++++
T Consensus        90 ~~~~I~~i~l~~~~~~~~~~~-~~~~~~l~~d~~~~~lywsD~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav  166 (400)
T 3p5b_L           90 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  166 (400)
T ss_dssp             ETTEEEEECTTSCSCEEEECS-CSCEEEEEEETTTTEEEEEETT--TTEEEEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred             ccceeEEEccCCcceeEeccc-cCcceEEeeeeccCceEEEecC--CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence            357888888876544433333 2346678898877888887532  568888888652    223333334456788888


Q ss_pred             cC-CCCeEEEecCCCcEEEeeCCCceeeeeeeec--CceeEEECCC-CcEEEEEE--CCEEEEEECCCCCcCCceEEEeC
Q 021648          107 CS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQ-GLVFAVAF--GGYIRMFDARKYEKGPFDIFSVG  180 (309)
Q Consensus       107 ~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~  180 (309)
                      .+ .++..++-...+.|.+.|+........+...  .-..++.++. +.++-+..  .+.|...++.....    .....
T Consensus       167 D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~----~~~~~  242 (400)
T 3p5b_L          167 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVT  242 (400)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC----EEEEC
T ss_pred             EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc----EEEEE
Confidence            87 4556667677889999988655433333211  1123455554 44443332  25677777643211    11122


Q ss_pred             CCCCCCeEEEEccCCCE-EEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          181 GDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       181 ~~~~~~~~v~~s~dg~~-l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      ......+.+++++++.. +++-...+.|..+|..... ...+............+++ ..++.+.+-...+.|..+|..+
T Consensus       243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~  320 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLT  320 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSS
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCC
Confidence            23345688999986654 4555567899999975433 3322211111123345666 3445666667778999999878


Q ss_pred             CceEEEee
Q 021648          260 GKEVASWM  267 (309)
Q Consensus       260 ~~~~~~~~  267 (309)
                      ++.+..+.
T Consensus       321 G~~~~~i~  328 (400)
T 3p5b_L          321 GSDVNLLA  328 (400)
T ss_dssp             CCCCEEEE
T ss_pred             CCceEEEe
Confidence            77666554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.99  E-value=0.00017  Score=68.50  Aligned_cols=238  Identities=14%  Similarity=0.102  Sum_probs=130.4

Q ss_pred             CCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC----CceEEEeeecccCEEEEEe
Q 021648           31 DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----NKYLRYFKGHHDRVVSLSL  106 (309)
Q Consensus        31 ~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~----~~~~~~~~~h~~~v~~v~~  106 (309)
                      ..+.|+..++.+.+....+.... .+..+++.+....++++..  ..+.|+.+++..    ......+.........+++
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~~~-~p~gla~d~~~~~Ly~sD~--~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav  460 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPNLR-NVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  460 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCCCT-TCCCCEEETTTTEEEECCT--TTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred             CccceEEEeCCCCcceeeeccCc-ceEEEccccccCeEEEEec--CCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence            34678888887665544443332 3456788887777877643  256899999875    2222222222233456777


Q ss_pred             cC-CCCeEEEecCCCcEEEeeCCCceeeeeeeec--CceeEEECCC-CcEEEEEEC--CEEEEEECCCCCcCCceEEEeC
Q 021648          107 CS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQ-GLVFAVAFG--GYIRMFDARKYEKGPFDIFSVG  180 (309)
Q Consensus       107 ~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~  180 (309)
                      .+ .++++++-...+.|.+.++........+...  .-..+++++. +.++.+..+  +.|..+++.....    ...+.
T Consensus       461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~----~~l~~  536 (699)
T 1n7d_A          461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVT  536 (699)
T ss_dssp             CCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC----CEESC
T ss_pred             EeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe----eEEEe
Confidence            74 4556666667789999997655433332211  1123455543 333332222  5666665532111    11111


Q ss_pred             CCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          181 GDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       181 ~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      ......+.++++|+ ++++++-...+.|..+|+..... ..+............+++..+ +.+++....+.|..++..+
T Consensus       537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred             CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence            12234567999986 56666777788999999864332 222211111122344566544 5555667778999999988


Q ss_pred             CceEEEeecCCCCCcEEE
Q 021648          260 GKEVASWMSFDTEPPVIK  277 (309)
Q Consensus       260 ~~~~~~~~~~~~~v~~l~  277 (309)
                      ++.+..+......+..|+
T Consensus       615 G~~~~~i~~~~~~P~~i~  632 (699)
T 1n7d_A          615 GSDVNLLAENLLSPEDMV  632 (699)
T ss_dssp             EEEEECCCTTCSSCCCCC
T ss_pred             CCceEEeecCCCCCcEEE
Confidence            877766543222344444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.97  E-value=0.0087  Score=53.35  Aligned_cols=235  Identities=10%  Similarity=0.120  Sum_probs=129.1

Q ss_pred             eeEEEEecC--CCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCC---Cc-EEEeeCCC
Q 021648           56 VDLVCFTSH--PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD---RT-VLLWDQRA  129 (309)
Q Consensus        56 v~~~~~~~~--~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D---g~-v~~Wd~~~  129 (309)
                      ...+++.++  ...++++.. +  +.|+.+|+.+++.. .+.+.......+++.++++.+++....   .. +...+...
T Consensus       141 P~gvavd~~s~~g~Lyv~D~-~--~~I~~id~~~g~v~-~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQ-R--DAFRHVDFVNQYVD-IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECB-T--SCEEEEETTTTEEE-EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred             CceEEEccccCCCEEEEEeC-C--CCEEEEECCCCEEE-EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC
Confidence            346778774  445555532 2  68999999877644 344455678999999999965554321   12 22222211


Q ss_pred             cee-eeeee-ecCceeEEECC-CCcEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCC-EEEEEeCC
Q 021648          130 EKC-QGLLR-VQGRPAAAYDD-QGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTME  204 (309)
Q Consensus       130 ~~~-~~~~~-~~~~~~~~~~~-~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~d  204 (309)
                      ... ...+. ...-...+.++ .+.++.+. .++.|+.+|...... ...+..... ......++++|+|+ ++++-...
T Consensus       217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~-~~~~~~~~~-~~~~~~ia~dpdG~~LYvad~~~  294 (433)
T 4hw6_A          217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL-TEEEVMMDT-KGSNFHIVWHPTGDWAYIIYNGK  294 (433)
T ss_dssp             TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE-EEEEEECSC-CSSCEEEEECTTSSEEEEEETTT
T ss_pred             CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE-EEEEeccCC-CCCcccEEEeCCCCEEEEEeCCC
Confidence            110 00111 11112345555 55555443 357888888653211 011222222 22234699999998 66666778


Q ss_pred             CcEEEEECC--CCeEe--EEeeec-C-----------CCCCccceEEE---------CCCCCEEEEEcCCCcEEEEECCC
Q 021648          205 GHIHVLDSF--RGTLL--STYNVK-P-----------VSRNSTLEASF---------SPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       205 g~v~i~d~~--~~~~~--~~~~~~-~-----------~~~~~~~~~~~---------sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      +.|+.+|..  ++...  ..+... .           ..-.....+++         .++|+.+++=.....|+.++. +
T Consensus       295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~  373 (433)
T 4hw6_A          295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-E  373 (433)
T ss_dssp             TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-T
T ss_pred             CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-C
Confidence            899998854  33221  111110 0           00122445888         778888888788889999985 5


Q ss_pred             CceEEEeecCC------------------CCCcEEEEC-CCeeEEEEccceEEEeeec
Q 021648          260 GKEVASWMSFD------------------TEPPVIKWT-PGSLMFVTGSSELSFWIPD  298 (309)
Q Consensus       260 ~~~~~~~~~~~------------------~~v~~l~~~-p~~~~l~s~~~d~~~~~~~  298 (309)
                      ++ +.++.+..                  ..+..|++. +++.++++-....++...+
T Consensus       374 G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          374 GR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             SE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             CC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence            53 43433221                  124569999 6777777655544444433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.85  E-value=0.0018  Score=62.07  Aligned_cols=193  Identities=9%  Similarity=0.084  Sum_probs=99.4

Q ss_pred             CEEEEEec-CCCCeEEEe-cCC----CcEEEeeCCCc-eeee-eeeecCceeEEECCCC-cEEEEEEC-----CEEEEEE
Q 021648          100 RVVSLSLC-SSKDCFISG-SLD----RTVLLWDQRAE-KCQG-LLRVQGRPAAAYDDQG-LVFAVAFG-----GYIRMFD  165 (309)
Q Consensus       100 ~v~~v~~~-~~~~~l~s~-s~D----g~v~~Wd~~~~-~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-----~~i~~~d  165 (309)
                      .+....|+ |||++|+-+ +.+    .+|+++|+.++ +... .+.. ......+++++ .++.+..+     ..|..++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~-~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG-TNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE-ECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC-ceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            57889999 999987733 222    35999999887 5221 1111 11234566666 44445554     2577777


Q ss_pred             CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC---CCcEEEEECCCCe-Ee--EEeeecCCCCCccceEEECCC
Q 021648          166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGT-LL--STYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~---dg~v~i~d~~~~~-~~--~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      +.........++.... ..-...+.+||||++|+....   ...|+++|+.++. ..  ..+.  .........+.|+. 
T Consensus       254 lgt~~~~~~lv~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~~~~~~s~~~~~-  329 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHN-PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR--PREKGVRYDVQMHG-  329 (751)
T ss_dssp             TTSCGGGCEEEEECCC-TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS--CCCTTCCEEEEEET-
T ss_pred             CCCCchhcEEEEecCC-CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee--cCCCCceEEEeeee-
Confidence            7543221222222211 122356789999999887653   3468888987652 11  2211  11122233344433 


Q ss_pred             CCEE-EEEcCC----CcEEEEECCCCceEEE-eecCCCC--CcEEEECCCeeEEEEccce--EEEeeec
Q 021648          240 GMFV-ISGSGD----GSVYAWSVRSGKEVAS-WMSFDTE--PPVIKWTPGSLMFVTGSSE--LSFWIPD  298 (309)
Q Consensus       240 g~~l-~s~s~D----g~i~vwd~~~~~~~~~-~~~~~~~--v~~l~~~p~~~~l~s~~~d--~~~~~~~  298 (309)
                      |+.| +....+    ..|..+|+.++..... +..+...  +..+.+. ++.++++...+  .++|..+
T Consensus       330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~d  397 (751)
T 2xe4_A          330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMM  397 (751)
T ss_dssp             TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEE
T ss_pred             CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEe
Confidence            5544 444443    2677777764222222 3334332  3344544 23444554443  4556554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.83  E-value=0.012  Score=50.68  Aligned_cols=203  Identities=7%  Similarity=0.036  Sum_probs=120.4

Q ss_pred             ceEEEEeCCCC-CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648           13 RISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL   91 (309)
Q Consensus        13 ~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~   91 (309)
                      .+..++|++.. .++.+-...+.|..++.+.+.....+.........+++.+.+..++++..  ..+.|.+.++......
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~--~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS--GTSRIEVANLDGAHRK  151 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET--TTTEEEEEETTSCSCE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcC--CCCeEEEEcCCCCceE
Confidence            35788998754 45556556788888888765433333322233467788877777777643  2568999998765433


Q ss_pred             EEeeecccCEEEEEecCCCC-eEEEecCC-CcEEEeeCCCceeeeeee--ecCceeEEECCCC-cEEEEE-ECCEEEEEE
Q 021648           92 RYFKGHHDRVVSLSLCSSKD-CFISGSLD-RTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQG-LVFAVA-FGGYIRMFD  165 (309)
Q Consensus        92 ~~~~~h~~~v~~v~~~~~~~-~l~s~s~D-g~v~~Wd~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~-~~~~i~~~d  165 (309)
                      ..+.......+++++.|.+. .+++-... +.|...++........+.  ...-...++++.+ .++-+- ..+.|..+|
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~  231 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  231 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence            33334446789999998544 55555545 788888875433222211  1112345666444 333332 347888888


Q ss_pred             CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648          166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  222 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~  222 (309)
                      +.....   ..+ +.........+++ .++.++++-...+.|..+|..+|+....+.
T Consensus       232 ~dG~~~---~~~-~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          232 LDGSHR---KAV-ISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             TTSCSC---EEE-ECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCCce---EEE-EeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            753211   111 1122234466777 466777777788889888876776655543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.81  E-value=0.0096  Score=48.94  Aligned_cols=201  Identities=6%  Similarity=0.074  Sum_probs=115.0

Q ss_pred             EeeecccCEEEEEecCCCCeEEE-ecCCCcEEEeeCCCceeeeeeeecC---ceeEEECCCCcEEEEE-ECCEEEEEECC
Q 021648           93 YFKGHHDRVVSLSLCSSKDCFIS-GSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVA-FGGYIRMFDAR  167 (309)
Q Consensus        93 ~~~~h~~~v~~v~~~~~~~~l~s-~s~Dg~v~~Wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~i~~~d~~  167 (309)
                      .+.|-.+.+.+++++|+++.|.+ ...++.|...|.. ++....+...+   ....++..++.++.+. .++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            34455568999999998775554 5567888888886 66666654432   2234555556544333 34678888764


Q ss_pred             CCCc-CCceEEEe----CCCCCCCeEEEEccCCCEEEEEeCCC--cEEEEECC-CCeEeEEeee----cCCCCCccceEE
Q 021648          168 KYEK-GPFDIFSV----GGDISDANVVKFSNDGRLMLLTTMEG--HIHVLDSF-RGTLLSTYNV----KPVSRNSTLEAS  235 (309)
Q Consensus       168 ~~~~-~~~~~~~~----~~~~~~~~~v~~s~dg~~l~~~~~dg--~v~i~d~~-~~~~~~~~~~----~~~~~~~~~~~~  235 (309)
                      .... ........    .........++++|++..|.++....  .|+.|+.. ....+.....    ..........++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            3221 01111211    11234568999999986666555443  45555521 1111111111    011223456799


Q ss_pred             ECCCC-CEEEEEcCCCcEEEEECCCCceEEEeecCC---------CCCcEEEECCCeeEEEEccceEEEee
Q 021648          236 FSPEG-MFVISGSGDGSVYAWSVRSGKEVASWMSFD---------TEPPVIKWTPGSLMFVTGSSELSFWI  296 (309)
Q Consensus       236 ~sp~g-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~---------~~v~~l~~~p~~~~l~s~~~d~~~~~  296 (309)
                      |.|.. ++++.......+.++|.. ++.+..+.-..         .+.-.|+|.|+|+++++.-. -.+|.
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~-n~~y~  248 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP-NRFYR  248 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT-TEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC-ceEEE
Confidence            99964 555566667788999975 55555443221         13456999999998877433 35554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.81  E-value=0.015  Score=51.01  Aligned_cols=203  Identities=7%  Similarity=0.027  Sum_probs=119.2

Q ss_pred             ceEEEEeCCCC-CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648           13 RISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL   91 (309)
Q Consensus        13 ~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~   91 (309)
                      ....++|++.+ .++.+-...+.|..++.+.+.....+.........+++.+.+..++++..  ..+.|.+.++......
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~--~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS--GTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEET--TTTEEEECBTTSCSCE
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcC--CCCeEEEEeCCCCceE
Confidence            46688999754 45556566788888988765433333322223456788877777777643  2567888888755433


Q ss_pred             EEeeecccCEEEEEecCCCC-eEEEecCC-CcEEEeeCCCceeeeeeee--cCceeEEECCCC-cEEEEE-ECCEEEEEE
Q 021648           92 RYFKGHHDRVVSLSLCSSKD-CFISGSLD-RTVLLWDQRAEKCQGLLRV--QGRPAAAYDDQG-LVFAVA-FGGYIRMFD  165 (309)
Q Consensus        92 ~~~~~h~~~v~~v~~~~~~~-~l~s~s~D-g~v~~Wd~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~-~~~~i~~~d  165 (309)
                      ..+........++++.|.+. .+++-..+ +.|...++...........  ..-..+++++.+ .++.+- ..+.|..+|
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d  274 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  274 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence            33444446789999998655 44554444 7788888754332222111  112345555433 333332 347888888


Q ss_pred             CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648          166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  222 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~  222 (309)
                      +....  ...+  +.........+++ .++.++++....+.|..+|..+|+.+..+.
T Consensus       275 ~dG~~--~~~~--~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          275 LDGSH--RKAV--ISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TTSCS--CEEE--ECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCCe--eEEE--EECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            65321  1111  1112234466777 456777777788899999877776665554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.73  E-value=0.016  Score=49.13  Aligned_cols=205  Identities=8%  Similarity=0.042  Sum_probs=117.7

Q ss_pred             cceEEEEeCCCC-CEEEEeeCCCcEEEEEcCC---Cceeee-eeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc
Q 021648           12 GRISSMDFHKSS-SYLVTASDDESIRLYDVTA---ATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   86 (309)
Q Consensus        12 ~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~---~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~   86 (309)
                      ....+++|++++ .+..+-...+.|..+|..+   +..... +...-.....+++.+.+..++++..  ..+.|.+.++.
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~--~~~~I~~~~~~  107 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVADTK  107 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET--TTTEEEEEETT
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEEC--CCCEEEEEeCC
Confidence            345689999865 4556666678999999875   222222 2222223567888776677776643  26789999987


Q ss_pred             CCceEEEeeecccCEEEEEecCCCC-eEEEecCC-CcEEEeeCCCceeeeeee--ecCceeEEECCCC-cEEEEE-ECCE
Q 021648           87 DNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLD-RTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQG-LVFAVA-FGGY  160 (309)
Q Consensus        87 ~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~D-g~v~~Wd~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~-~~~~  160 (309)
                      .......+........++++.|.+. .+++-... +.|...++..........  ...-...++++.+ .++.+. ..+.
T Consensus       108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~  187 (316)
T 1ijq_A          108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (316)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence            6543333333446788999998655 44444333 678887775432221111  1122345566444 333333 3468


Q ss_pred             EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEe
Q 021648          161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  221 (309)
Q Consensus       161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~  221 (309)
                      |..+|+....  ...+............+++. ++.++++....+.|..+|..+++.+..+
T Consensus       188 I~~~d~dg~~--~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          188 ISSIDVNGGN--RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEETTSCS--CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEecCCCc--eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            9999875321  11122221222334567775 4677777778889999998777665544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.72  E-value=0.018  Score=49.38  Aligned_cols=197  Identities=12%  Similarity=0.227  Sum_probs=114.6

Q ss_pred             CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEec----CCCE--EEEEcCCCC--CceeEEEEc--cCCceE
Q 021648           22 SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS----HPTT--VIYSSKNGW--DESLRLLSL--HDNKYL   91 (309)
Q Consensus        22 ~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--~~~~s~~g~--d~~i~~~d~--~~~~~~   91 (309)
                      ..+++++....+-+.+||+ +|+.++.+...  .+..+...+    .++.  +++++. ..  ++++++|++  .+++ +
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g--~~nnVD~r~~~~l~g~~~dla~as~-R~~~~n~l~vf~iDp~~~~-l  113 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTG--KLNNVDIRYDFPLNGKKVDIAAASN-RSEGKNTIEIYAIDGKNGT-L  113 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECCS--CEEEEEEEEEEEETTEEEEEEEEEE-CSTTCCEEEEEEECTTTCC-E
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccCC--CcccEEEecccccCCceEeEEEEeC-CCCCCCeEEEEEECCCCCc-e
Confidence            3466777778889999999 89999888642  233333333    3332  445543 33  678999977  4443 4


Q ss_pred             EEeee------cc-cCEEEEEe--cCC-CC-eEEEecCCCcEEEeeCC-------CceeeeeeeecCce-eEEECCC-Cc
Q 021648           92 RYFKG------HH-DRVVSLSL--CSS-KD-CFISGSLDRTVLLWDQR-------AEKCQGLLRVQGRP-AAAYDDQ-GL  151 (309)
Q Consensus        92 ~~~~~------h~-~~v~~v~~--~~~-~~-~l~s~s~Dg~v~~Wd~~-------~~~~~~~~~~~~~~-~~~~~~~-~~  151 (309)
                      ..+..      .. ..+..+++  +|. ++ ++.....+|.+..|++.       +.+.+..+.+...+ .+.+++. +.
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~  193 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR  193 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence            44422      11 56677888  664 44 57777788999999873       23444555554433 3455544 44


Q ss_pred             EEEEEECCEEEEEECCCCCcCCce-EEEeC-CCC-CCCeEEEE--ccCCC-EEEEEe-CCCcEEEEECC-CCeEeEEeee
Q 021648          152 VFAVAFGGYIRMFDARKYEKGPFD-IFSVG-GDI-SDANVVKF--SNDGR-LMLLTT-MEGHIHVLDSF-RGTLLSTYNV  223 (309)
Q Consensus       152 ~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~-~~~-~~~~~v~~--s~dg~-~l~~~~-~dg~v~i~d~~-~~~~~~~~~~  223 (309)
                      ++..-.+..|-.++.+........ +.... ++. .++..+++  .++|+ +|++.+ .+....+||.. +.+.+..|.+
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~I  273 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRI  273 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred             EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEe
Confidence            444444545555554322111111 22221 222 36777777  56655 454444 67899999986 6677777654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.68  E-value=0.02  Score=48.72  Aligned_cols=226  Identities=12%  Similarity=0.061  Sum_probs=128.4

Q ss_pred             CCcEEEEEcCCCce-eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce-EEEeeecccCEEEEEecC-
Q 021648           32 DESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-LRYFKGHHDRVVSLSLCS-  108 (309)
Q Consensus        32 D~~v~iWd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~-~~~~~~h~~~v~~v~~~~-  108 (309)
                      ...|+..|++.... ...+.........+.|.+....++++..  ..+.|..+++..+.. ...+........++++.+ 
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~--~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~   89 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV--SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL   89 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEET--TTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEEC--CCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence            57889999986532 1112111123456788877777877753  257888899876532 222333334566788876 


Q ss_pred             CCCeEEEecCCCcEEEeeCCCceeeeeeeec-Cc-eeEEECCC-CcEEEEEE--CCEEEEEECCCCCcCCceEEEeCCCC
Q 021648          109 SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-GR-PAAAYDDQ-GLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDI  183 (309)
Q Consensus       109 ~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~  183 (309)
                      .++..++-...+.|.+.++........+... .. ...+.++. +.++-+..  .+.|..+++....    .........
T Consensus        90 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----~~~~~~~~l  165 (318)
T 3sov_A           90 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS----RFIIINSEI  165 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS----CEEEECSSC
T ss_pred             CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC----eEEEEECCC
Confidence            4556667677789999987654322222111 11 23445543 44443332  3677777764211    111112223


Q ss_pred             CCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 021648          184 SDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  262 (309)
Q Consensus       184 ~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~  262 (309)
                      ...+.++++|++ +++++-...+.|..+|..... ...+..  ........+++. .+..+.+-...+.|..++..+++.
T Consensus       166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~--~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC--SCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEec--CCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence            345789999855 555666677899999976332 222221  112233456664 345566667778999999988776


Q ss_pred             EEEee
Q 021648          263 VASWM  267 (309)
Q Consensus       263 ~~~~~  267 (309)
                      ...+.
T Consensus       242 ~~~i~  246 (318)
T 3sov_A          242 LREIH  246 (318)
T ss_dssp             CEEEE
T ss_pred             eEEEe
Confidence            55543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.66  E-value=0.021  Score=48.68  Aligned_cols=267  Identities=11%  Similarity=0.064  Sum_probs=134.6

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec----cccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS----KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   86 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~   86 (309)
                      ...+.+|.|.+++..++ ++.++.| +...+.|+.-+.+..    ....+..+.+.+  ..++++..   ++.+.. ...
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g~---~g~i~~-S~D  106 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIVGE---PPIMLH-TTD  106 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEEEE---TTEEEE-ESS
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEEEC---CCeEEE-ECC
Confidence            45789999988777777 4567765 444455543322211    233466777764  33333321   233322 222


Q ss_pred             CCceEEEee---ecccCEEEEEecCCCCeEEEecCCCcE-EEeeCCCceeeeeeee--c-CceeEEECCCCcEEEEEECC
Q 021648           87 DNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTV-LLWDQRAEKCQGLLRV--Q-GRPAAAYDDQGLVFAVAFGG  159 (309)
Q Consensus        87 ~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~s~Dg~v-~~Wd~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~  159 (309)
                      .|+.-....   .+.+.+..+.+.++++.++.+. ++.+ +-+|  .++.-..+..  . ......+.+++.+++.+..+
T Consensus       107 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G  183 (327)
T 2xbg_A          107 GGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRG  183 (327)
T ss_dssp             TTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTS
T ss_pred             CCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCC
Confidence            233222211   2345677787777666665554 5554 4433  1221111111  1 12234555667777766555


Q ss_pred             EEEE-EECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC-CCCccceEEEC
Q 021648          160 YIRM-FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-SRNSTLEASFS  237 (309)
Q Consensus       160 ~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~s  237 (309)
                      .+.. .|-. .  ....... ......+..+.++++++.++. +.+|.+++.+...+..-........ ....+..+.+.
T Consensus       184 ~~~~S~d~g-G--~tW~~~~-~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~  258 (327)
T 2xbg_A          184 SFYSTWEPG-Q--TAWEPHN-RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR  258 (327)
T ss_dssp             SEEEEECTT-C--SSCEEEE-CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred             cEEEEeCCC-C--CceeECC-CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence            4433 2210 0  0111111 122345677888999987654 4678777764222332222221101 11246678899


Q ss_pred             CCCCEEEEEcCCCcEEEEECCCCceEEEee---cCCCCCcEEEECCCeeEEEEccceEEEee
Q 021648          238 PEGMFVISGSGDGSVYAWSVRSGKEVASWM---SFDTEPPVIKWTPGSLMFVTGSSELSFWI  296 (309)
Q Consensus       238 p~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~---~~~~~v~~l~~~p~~~~l~s~~~d~~~~~  296 (309)
                      |+++.++.+. ++.+ .+....++.-..+.   .+...+.+++|.++++.++.|. +..++.
T Consensus       259 ~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~-~G~i~~  317 (327)
T 2xbg_A          259 TPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQ-KGILLR  317 (327)
T ss_dssp             SSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECS-TTEEEE
T ss_pred             CCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcC-CceEEE
Confidence            8888777665 6766 34454443322222   2345788999987777665554 434443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.65  E-value=0.032  Score=50.39  Aligned_cols=248  Identities=11%  Similarity=0.148  Sum_probs=138.4

Q ss_pred             eEEEEeCCC--CCEEEEeeCCCcEEEEEcCCCceeeeeeccc---cceeEEEE-------ecCCCEEEEEcCCCC----C
Q 021648           14 ISSMDFHKS--SSYLVTASDDESIRLYDVTAATCLKTINSKK---YGVDLVCF-------TSHPTTVIYSSKNGW----D   77 (309)
Q Consensus        14 V~~i~~s~~--~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~---~~v~~~~~-------~~~~~~~~~~s~~g~----d   77 (309)
                      -..|+|+|.  ++++++-...+.|++.|..++.....+....   .....++|       .+++..++++...+.    .
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            458899983  4455555445678888988766554443321   23677899       999987776654321    1


Q ss_pred             ceeEEEEccC-CceE-----EEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCC-------Ccee-----------
Q 021648           78 ESLRLLSLHD-NKYL-----RYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQR-------AEKC-----------  132 (309)
Q Consensus        78 ~~i~~~d~~~-~~~~-----~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~-------~~~~-----------  132 (309)
                      ..+.+.+... ++..     ..+... .....++++|+ +.++++-..++.|..+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence            2355665443 2221     222222 23457788995 5556677788889999986       3432           


Q ss_pred             e-eeeeecC---ceeEEECCCCcEEEEE--ECCEEEEEECCCCCc---CCceEEEe---CC---------CCCCCe-EEE
Q 021648          133 Q-GLLRVQG---RPAAAYDDQGLVFAVA--FGGYIRMFDARKYEK---GPFDIFSV---GG---------DISDAN-VVK  190 (309)
Q Consensus       133 ~-~~~~~~~---~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~---~~~~~~~~---~~---------~~~~~~-~v~  190 (309)
                      . .......   ...+++++++..+..+  ....|+.++......   .+..+...   .+         ...... .++
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~  379 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF  379 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence            0 1122221   1246778887744444  357888866432110   00001110   00         111223 455


Q ss_pred             Ec-------cCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC---------------------CCCccceEEECCC-CC
Q 021648          191 FS-------NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---------------------SRNSTLEASFSPE-GM  241 (309)
Q Consensus       191 ~s-------~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~~sp~-g~  241 (309)
                      ..       ++|.++++-..+.+|+.++. +|.. .++-....                     .-.....+++.++ |.
T Consensus       380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~  457 (496)
T 3kya_A          380 VKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM  457 (496)
T ss_dssp             EECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred             EccccccccCCCeEEEEECCCCEEEEEeC-CCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence            55       67888888888999999984 5643 33321100                     0123456888886 66


Q ss_pred             EEEEEcCCCcEEEEECCCCceEE
Q 021648          242 FVISGSGDGSVYAWSVRSGKEVA  264 (309)
Q Consensus       242 ~l~s~s~Dg~i~vwd~~~~~~~~  264 (309)
                      .+++=.....|+.+++.....+.
T Consensus       458 lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          458 FYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             EEEEETTTTEEEEEEECCCC---
T ss_pred             EEEEeCCCCEEEEEECCCCcccc
Confidence            66666777788888887655544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.55  E-value=0.087  Score=52.82  Aligned_cols=277  Identities=10%  Similarity=0.101  Sum_probs=144.3

Q ss_pred             CcceEEEEeCCC------CCEEEEeeC-CCcEEEEEcCCCceeee--eeccccceeEEEEe--cCCCEEEEEcCCCCCce
Q 021648           11 NGRISSMDFHKS------SSYLVTASD-DESIRLYDVTAATCLKT--INSKKYGVDLVCFT--SHPTTVIYSSKNGWDES   79 (309)
Q Consensus        11 ~~~V~~i~~s~~------~~~l~t~s~-D~~v~iWd~~~~~~~~~--~~~~~~~v~~~~~~--~~~~~~~~~s~~g~d~~   79 (309)
                      ..+|.|+++.|.      ++++|.|.+ |++|+|+++.+.+.+..  +... .....+++.  ....+++.+-.   |+.
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L~igl~---dG~  628 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYLLCALG---DGA  628 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEEEEEET---TSE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEEEEEeC---CCe
Confidence            468999999863      368999998 99999999987665533  2211 122223222  12224454443   555


Q ss_pred             eEEEEc--cCCceE---EEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceee-eeeeecCc-eeEEECC---
Q 021648           80 LRLLSL--HDNKYL---RYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQ-GLLRVQGR-PAAAYDD---  148 (309)
Q Consensus        80 i~~~d~--~~~~~~---~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~-~~~~~~~~-~~~~~~~---  148 (309)
                      +..+.+  .+++..   ..+-| ..+++=..+...+. .+...| |+...++--+ ++.. ..+..... ..+.+..   
T Consensus       629 l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~  705 (1158)
T 3ei3_A          629 LFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGY  705 (1158)
T ss_dssp             EEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSS
T ss_pred             EEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccC
Confidence            544443  344422   12223 22333333333333 233333 5555554322 2211 11111111 1223321   


Q ss_pred             CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC-------------------------
Q 021648          149 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-------------------------  203 (309)
Q Consensus       149 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~-------------------------  203 (309)
                      .+.++ ...++.+++..+....  .+.+..+.-. ..+..++++|+.+.++....                         
T Consensus       706 ~~g~v-~~~~~~LrI~~i~~~~--~~~~~~ipL~-~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  781 (1158)
T 3ei3_A          706 PDSLA-LANNSTLTIGTIDEIQ--KLHIRTVPLY-ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSS  781 (1158)
T ss_dssp             TTEEE-EECSSCEEEEEECCSS--SEEEEEEECS-SEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEE
T ss_pred             CCcEE-EEcCCceEEEEecccC--CeeEEEEeCC-CCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhh
Confidence            23343 4446668888775442  3333322111 24566677776655443321                         


Q ss_pred             ------------------------CCcEEEEECCCCeEeEEeeecCCCC-CccceEEECCC-CCEEEEEc----------
Q 021648          204 ------------------------EGHIHVLDSFRGTLLSTYNVKPVSR-NSTLEASFSPE-GMFVISGS----------  247 (309)
Q Consensus       204 ------------------------dg~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~sp~-g~~l~s~s----------  247 (309)
                                              -..|+++|..+.+.+..++...... .++..+.|..+ ..+++.|.          
T Consensus       782 ~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~  861 (1158)
T 3ei3_A          782 SVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP  861 (1158)
T ss_dssp             EECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSC
T ss_pred             cccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCC
Confidence                                    1247788888888777776543211 11222335433 46887775          


Q ss_pred             CCCcEEEEECCCCceEEEe--ecCCCCCcEEEECCCeeEEEEccceEEEeeecCC
Q 021648          248 GDGSVYAWSVRSGKEVASW--MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS  300 (309)
Q Consensus       248 ~Dg~i~vwd~~~~~~~~~~--~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~  300 (309)
                      .-|.|+++++..+ +++.+  ....+.+++|+- -+|++++..+.-+++|.+...
T Consensus       862 ~~Gri~vf~v~~~-kL~lv~~~~v~g~v~al~~-~~g~Lla~ig~~l~vy~l~~~  914 (1158)
T 3ei3_A          862 KQGRIVVFQYSDG-KLQTVAEKEVKGAVYSMVE-FNGKLLASINSTVRLYEWTTE  914 (1158)
T ss_dssp             CCEEEEEEEEETT-EEEEEEEEEESSCEEEEEE-ETTEEEEEETTEEEEEEECTT
T ss_pred             CceEEEEEEEECC-EEEEEEEEEcCCcCEEEee-eCCEEEEEcCCEEEEEECCCC
Confidence            3478999999744 33222  234567788772 256888888888999988644

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.49  E-value=0.046  Score=48.08  Aligned_cols=207  Identities=8%  Similarity=-0.001  Sum_probs=119.5

Q ss_pred             CcceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCc----eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648           11 NGRISSMDFHKSSS-YLVTASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus        11 ~~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      -..+..++|++.+. +..+-...+.|..+++....    ....+...-.....+++.+.+..++++..  ..+.|.+.++
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~--~~~~I~~~~~  188 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVADT  188 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEECT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEEC--CCCeEEEEeC
Confidence            35677899998544 55555567888888886421    22222222334567888876677777643  2578999998


Q ss_pred             cCCceEEEeeecccCEEEEEecCCCC-eEEEec-CCCcEEEeeCCCceeeeeeee--cCceeEEECCCCcEEEEEE--CC
Q 021648           86 HDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGS-LDRTVLLWDQRAEKCQGLLRV--QGRPAAAYDDQGLVFAVAF--GG  159 (309)
Q Consensus        86 ~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s-~Dg~v~~Wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~  159 (309)
                      ........+.......+++++.|.+. +++|-. ..+.|...++........+..  ..-..+++++.+..+..+.  .+
T Consensus       189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~  268 (400)
T 3p5b_L          189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  268 (400)
T ss_dssp             TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence            76654444444455689999998554 445542 246788888754332222211  1123455664443333332  46


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  222 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~  222 (309)
                      .|..+|+....  ...+............+++ .++.++++....+.|..+|..+|+.+..+.
T Consensus       269 ~I~~~d~dG~~--~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          269 SISSIDVNGGN--RKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEEEETTSCC--CEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEEEeCCCCc--cEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            88888875321  1112222122234456666 345667777778899999977777665543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.44  E-value=0.018  Score=49.02  Aligned_cols=154  Identities=12%  Similarity=0.140  Sum_probs=96.9

Q ss_pred             EEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeeecC---------c-eeEEE---CCCCcEEEEEE-----------
Q 021648          103 SLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQG---------R-PAAAY---DDQGLVFAVAF-----------  157 (309)
Q Consensus       103 ~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~---------~-~~~~~---~~~~~~~~~~~-----------  157 (309)
                      ++.|.+... +.++.-..++|..||...+..... ....         . ..+..   ++.+.++.+..           
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            567776444 455555899999999875543322 2221         1 23456   46677776544           


Q ss_pred             ---CCEEEEEECC---CCCcCCceEEEeCC-----------CCCCCeEEEEccCCCEEEEEeCC-CcEEEEECCCCeEeE
Q 021648          158 ---GGYIRMFDAR---KYEKGPFDIFSVGG-----------DISDANVVKFSNDGRLMLLTTME-GHIHVLDSFRGTLLS  219 (309)
Q Consensus       158 ---~~~i~~~d~~---~~~~~~~~~~~~~~-----------~~~~~~~v~~s~dg~~l~~~~~d-g~v~i~d~~~~~~~~  219 (309)
                         +..+..||+.   +.+.  .....+..           .....+.++..++|+..++++.. +.|..++.... .+.
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~--~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~  172 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKP--VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVS  172 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCC--SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEE
T ss_pred             cCCCCEEEEEcCCcCCCCCE--EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEe
Confidence               4678999987   3221  11122210           11236788999999999999888 88888887533 333


Q ss_pred             EeeecC-C--CCCccceEEECCCCCEEEEEcCCCcEEEEECCCC
Q 021648          220 TYNVKP-V--SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG  260 (309)
Q Consensus       220 ~~~~~~-~--~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~  260 (309)
                      .+.... .  .......++++|+|+.|+....++.+..+|+.+.
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            322111 0  1112347899999999999877999999999753

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.42  E-value=0.04  Score=48.43  Aligned_cols=136  Identities=13%  Similarity=0.216  Sum_probs=85.3

Q ss_pred             EEECCEEEEEECCCCCcCCceEEEeCC--CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe------------EeEE
Q 021648          155 VAFGGYIRMFDARKYEKGPFDIFSVGG--DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT------------LLST  220 (309)
Q Consensus       155 ~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~------------~~~~  220 (309)
                      ...++.||.-++...  ..|+.+....  ...++..+..||+|++||..+ +..|.|..+..+.            ....
T Consensus        37 ~a~~n~iR~~~i~~~--~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~t  113 (452)
T 3pbp_A           37 FIQDNIIRWYNVLTD--SLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFH  113 (452)
T ss_dssp             EEETTEEEEEETTTC--SSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEE
T ss_pred             EEECCEEEEEECCCC--CcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeE
Confidence            344566676665432  2455555542  334678899999999998874 5578887765221            1223


Q ss_pred             eeecCC---CCCccceEEECCC---CCEEEEEcCCCcEEEEECCCCc--eEEEee---------cCCCCCcEEEECCCee
Q 021648          221 YNVKPV---SRNSTLEASFSPE---GMFVISGSGDGSVYAWSVRSGK--EVASWM---------SFDTEPPVIKWTPGSL  283 (309)
Q Consensus       221 ~~~~~~---~~~~~~~~~~sp~---g~~l~s~s~Dg~i~vwd~~~~~--~~~~~~---------~~~~~v~~l~~~p~~~  283 (309)
                      +...+.   ...+|..+.|+|-   +..|++-..|++|++||+....  +. .+.         .....+.+++|.+++-
T Consensus       114 y~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~l  192 (452)
T 3pbp_A          114 YSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGL  192 (452)
T ss_dssp             EEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred             EEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCc
Confidence            443221   2356888999994   5799999999999999997622  22 221         1224677899999874


Q ss_pred             --EEEEccc--eEEE
Q 021648          284 --MFVTGSS--ELSF  294 (309)
Q Consensus       284 --~l~s~~~--d~~~  294 (309)
                        ++++...  |++.
T Consensus       193 TLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          193 TLYCLNTTEGGDIFA  207 (452)
T ss_dssp             CEEEEECTTSCEEEE
T ss_pred             EEEEEecCCCCCEEE
Confidence              4444333  4443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.41  E-value=0.0024  Score=60.61  Aligned_cols=205  Identities=8%  Similarity=0.042  Sum_probs=112.3

Q ss_pred             ceEEEEeCCCCCEE-EEeeCCCcEEEEEcCC----CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648           13 RISSMDFHKSSSYL-VTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   87 (309)
Q Consensus        13 ~V~~i~~s~~~~~l-~t~s~D~~v~iWd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~   87 (309)
                      .+..|+|++.+..| ++-...+.|+.+++.+    ......+...-.....+++.+.+..++++..  ..+.|.+.++..
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~--~~~~I~v~d~dg  484 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVADTKG  484 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCT--TTSCEEEEBSSS
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEec--cCCeEEEEecCC
Confidence            35578888865554 4445567888888875    2222222221122455777765666666532  257899999876


Q ss_pred             CceEEEeeecccCEEEEEecCCCC-eEEEecCC-CcEEEeeCCCceeeeee--eecCceeEEECCCC-cEEEEE-ECCEE
Q 021648           88 NKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLD-RTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQG-LVFAVA-FGGYI  161 (309)
Q Consensus        88 ~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~D-g~v~~Wd~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~-~~~~i  161 (309)
                      ......+.........+++.|.+. ++++-... +.|...++........+  .+..-..+++++.+ .++.+- ..+.|
T Consensus       485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I  564 (699)
T 1n7d_A          485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  564 (699)
T ss_dssp             CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence            543333333334567888988644 44544333 67887776533221111  11112345666543 333333 35788


Q ss_pred             EEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648          162 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  222 (309)
Q Consensus       162 ~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~  222 (309)
                      ..+++....  ...+............+++..+ .++++....+.|..+|..+++.+..+.
T Consensus       565 ~~~d~dG~~--~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          565 SSIDVNGGN--RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EEECSSSSC--CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEEccCCCc--eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            888875321  1111111111222344566554 566666778899999988888776553

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.33  E-value=0.059  Score=45.86  Aligned_cols=234  Identities=9%  Similarity=0.051  Sum_probs=114.8

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec---cccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS---KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   87 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~   87 (309)
                      ...+.+|.|++ +..++ ++.++.|.. ..+.|+.-+.+..   ....+..+.+.+++..++.+.    ++.+.. ....
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~g~v~~-S~Dg  150 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN----VGAIYR-TKDS  150 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET----TCCEEE-ESST
T ss_pred             CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC----CccEEE-EcCC
Confidence            44688999986 44444 455665433 3344544333221   122344555555554444332    222211 1222


Q ss_pred             Cce-EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeC--CCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEE
Q 021648           88 NKY-LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ--RAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF  164 (309)
Q Consensus        88 ~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (309)
                      |+. .....++...+..+.+.++++.++.+...+..+-+|-  ++=+............+.+.+++.++.++.++.+++.
T Consensus       151 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s  230 (327)
T 2xbg_A          151 GKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFS  230 (327)
T ss_dssp             TSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEe
Confidence            332 2223345667899999998887776654444444542  1111111100111223445666777777777777665


Q ss_pred             ECCCCCcCCceEEEeC--CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE
Q 021648          165 DARKYEKGPFDIFSVG--GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  242 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~--~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  242 (309)
                      +....+  ........  .....+..+.+.++++.++++. +|.+.. ....|..-............+..+.|.+++ .
T Consensus       231 ~~D~G~--tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~  305 (327)
T 2xbg_A          231 DPDNSE--NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLC-SQDGGQTWQQDVDVKKVPSNFYKILFFSPD-Q  305 (327)
T ss_dssp             ETTEEE--EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEEE-ESSTTSSCEECGGGTTSSSCCCEEEEEETT-E
T ss_pred             cCCCCC--eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEEE-eCCCCcccEEcCccCCCCCCeEEEEEECCC-c
Confidence            311000  00000000  0112467788888888776654 676643 333343333222111112345678887555 4


Q ss_pred             EEEEcCCCcEEEEEC
Q 021648          243 VISGSGDGSVYAWSV  257 (309)
Q Consensus       243 l~s~s~Dg~i~vwd~  257 (309)
                      +++++.+|.|.-++-
T Consensus       306 ~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          306 GFILGQKGILLRYVT  320 (327)
T ss_dssp             EEEECSTTEEEEECC
T ss_pred             eEEEcCCceEEEEcC
Confidence            667778897776654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.27  E-value=0.043  Score=47.10  Aligned_cols=185  Identities=11%  Similarity=0.169  Sum_probs=102.5

Q ss_pred             CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECC----CCc---EEEEE-E---CCEEEEEECCCCCcCCceEEE
Q 021648          110 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD----QGL---VFAVA-F---GGYIRMFDARKYEKGPFDIFS  178 (309)
Q Consensus       110 ~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~-~---~~~i~~~d~~~~~~~~~~~~~  178 (309)
                      ..+++....++-+.++|+ +++.+..+.....+.+..-+    .+.   ++.++ .   ++.|.+|++.... .++....
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~-~~l~~i~  117 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN-GTLQSMT  117 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-CCEEECS
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-Cceeecc
Confidence            345666667788999998 66665555432222221111    111   22222 2   4789999763211 1121110


Q ss_pred             -----eCCCCCCCeEEEE--ccC-CC-EEEEEeCCCcEEEEEC-------CCCeEeEEeeecCCCCCccceEEECCCCCE
Q 021648          179 -----VGGDISDANVVKF--SND-GR-LMLLTTMEGHIHVLDS-------FRGTLLSTYNVKPVSRNSTLEASFSPEGMF  242 (309)
Q Consensus       179 -----~~~~~~~~~~v~~--s~d-g~-~l~~~~~dg~v~i~d~-------~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  242 (309)
                           +......+..+|+  +|. ++ ++.....+|.+..|++       .+.+++.++...+    .+-.|...+...+
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs----q~EgcvvDd~~g~  193 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS----QTEGMAADDEYGR  193 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS----CEEEEEEETTTTE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC----CcceEEEcCCCCe
Confidence                 0011134556777  774 54 5667777899998887       3345666776543    3445778888999


Q ss_pred             EEEEcCCCcEEEEECC-----CCceEEEee--cCCCCCcEEEE--CCCee--EEEEccceEEEeeecCC
Q 021648          243 VISGSGDGSVYAWSVR-----SGKEVASWM--SFDTEPPVIKW--TPGSL--MFVTGSSELSFWIPDLS  300 (309)
Q Consensus       243 l~s~s~Dg~i~vwd~~-----~~~~~~~~~--~~~~~v~~l~~--~p~~~--~l~s~~~d~~~~~~~~~  300 (309)
                      |+.+-+|..|..++.+     +++.+..+.  .....+-.|++  .++++  +|++.-.+-.+-+.+..
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            9999999777666754     233444331  22345666766  56654  44444334444444544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.23  E-value=0.14  Score=47.94  Aligned_cols=200  Identities=9%  Similarity=-0.012  Sum_probs=107.8

Q ss_pred             ceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648           13 RISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL   91 (309)
Q Consensus        13 ~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~   91 (309)
                      .+.+|+|++.+. +..+-..++.|..++.+.......+...-.....+++.+.+..++++..  ..+.|.+.++......
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~--~~~~I~v~~~dG~~~~  115 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADT--GTNRIEVSKLDGQHRQ  115 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET--TTTEEEEEETTSTTCE
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEEC--CCCEEEEEecCCCcEE
Confidence            466899998654 4566667888888888654333333322234567888877777777643  2578889888654432


Q ss_pred             EEeeecccCEEEEEecCC-CCeEEEe-cCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCC
Q 021648           92 RYFKGHHDRVVSLSLCSS-KDCFISG-SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY  169 (309)
Q Consensus        92 ~~~~~h~~~v~~v~~~~~-~~~l~s~-s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  169 (309)
                      ..+.......+++++.|. |..++|- +..+.|...++.........                                 
T Consensus       116 ~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~---------------------------------  162 (628)
T 4a0p_A          116 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV---------------------------------  162 (628)
T ss_dssp             EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE---------------------------------
T ss_pred             EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE---------------------------------
Confidence            223344456788888874 4444443 22344444443322110000                                 


Q ss_pred             CcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcC
Q 021648          170 EKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG  248 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~  248 (309)
                                 ......+.+++++++ +++++-...+.|..+|+..... ..+...   ......+++.. ++.+.|-..
T Consensus       163 -----------~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~---l~~P~glav~~-~~ly~tD~~  226 (628)
T 4a0p_A          163 -----------PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD---LPHPFGLTQYQ-DYIYWTDWS  226 (628)
T ss_dssp             -----------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC---CSCEEEEEEET-TEEEEEETT
T ss_pred             -----------CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc---CCCceEEEEEC-CEEEEecCC
Confidence                       001223566777754 3444445566777777643322 222111   11223455543 444455555


Q ss_pred             CCcEEEEECCCCceE
Q 021648          249 DGSVYAWSVRSGKEV  263 (309)
Q Consensus       249 Dg~i~vwd~~~~~~~  263 (309)
                      .+.|...|..+++..
T Consensus       227 ~~~I~~~dk~tg~~~  241 (628)
T 4a0p_A          227 RRSIERANKTSGQNR  241 (628)
T ss_dssp             TTEEEEEETTTCCSC
T ss_pred             CCEEEEEECCCCCce
Confidence            677777776665543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.22  E-value=0.087  Score=45.45  Aligned_cols=179  Identities=15%  Similarity=0.180  Sum_probs=97.9

Q ss_pred             EEEecCCCCeEEEec------------CCCcEEEeeCCCc--eeeeeeeecC--------ce-eEEE-C-CCC--cEEEE
Q 021648          103 SLSLCSSKDCFISGS------------LDRTVLLWDQRAE--KCQGLLRVQG--------RP-AAAY-D-DQG--LVFAV  155 (309)
Q Consensus       103 ~v~~~~~~~~l~s~s------------~Dg~v~~Wd~~~~--~~~~~~~~~~--------~~-~~~~-~-~~~--~~~~~  155 (309)
                      .+.+.|+|..+++++            .+|.|.++|+.+.  +.. .+...+        .+ ...+ . .++  .++.+
T Consensus        54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv  132 (355)
T 3sre_A           54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  132 (355)
T ss_dssp             EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEE-ECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-EEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence            444566665555542            6899999998732  222 222211        11 1111 1 123  24433


Q ss_pred             EE---CCEEEEEECCCCCcCCceEEEeCCC-CCCCeEEEEccCCCEEEEEeC-----------------CCcEEEEECCC
Q 021648          156 AF---GGYIRMFDARKYEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTM-----------------EGHIHVLDSFR  214 (309)
Q Consensus       156 ~~---~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~v~~s~dg~~l~~~~~-----------------dg~v~i~d~~~  214 (309)
                      -.   +..|.+|++.........+....+. ....+.+.+.++|+++++...                 .|.|+-+|..+
T Consensus       133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~  212 (355)
T 3sre_A          133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  212 (355)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC
T ss_pred             ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe
Confidence            32   3577787765322111112233332 345688999999998887651                 25566666532


Q ss_pred             CeEeEEeeecCCCCCccceEEECCCCCEEEEE-cCCCcEEEEECCC-Cce--EEEeecCCCCCcEEEECC-CeeEEEEcc
Q 021648          215 GTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVYAWSVRS-GKE--VASWMSFDTEPPVIKWTP-GSLMFVTGS  289 (309)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~-s~Dg~i~vwd~~~-~~~--~~~~~~~~~~v~~l~~~p-~~~~l~s~~  289 (309)
                      -+.+.  ..    -.....++||||+++++.+ +..+.|+.|++.. ++.  ...+ ...+.+-.++..+ +|++.+++.
T Consensus       213 ~~~~~--~~----l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          213 VRVVA--EG----FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             CEEEE--EE----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred             EEEee--cC----CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence            22211  11    1223468999999887776 5678999999863 332  1223 3344456688888 588777554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.10  E-value=0.15  Score=46.03  Aligned_cols=237  Identities=11%  Similarity=0.112  Sum_probs=130.2

Q ss_pred             eEEEEec-CCCEEEEEcCCCCCceeEEEEccCCceEEEeee---cccCEEEEEe-------cCCCCeEEEecCCC-----
Q 021648           57 DLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG---HHDRVVSLSL-------CSSKDCFISGSLDR-----  120 (309)
Q Consensus        57 ~~~~~~~-~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~---h~~~v~~v~~-------~~~~~~l~s~s~Dg-----  120 (309)
                      ..++|.| +...++.+...  .+.|++.|++++........   .......++|       .+++++|+.+...+     
T Consensus       142 ~~la~dp~~~~~Lyv~~~~--~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          142 GRLAFDPLNKDHLYICYDG--HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             EEEEEETTEEEEEEEEEET--EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CEEEEccCCCCEEEEEECC--CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4577777 34455555421  45788999888765443332   2245899999       99998666555443     


Q ss_pred             --cEEEeeCCC-ceee-----eee-eecCceeEEECC-CCcEEEEE-ECCEEEEEECC-------CCCc--C---C----
Q 021648          121 --TVLLWDQRA-EKCQ-----GLL-RVQGRPAAAYDD-QGLVFAVA-FGGYIRMFDAR-------KYEK--G---P----  173 (309)
Q Consensus       121 --~v~~Wd~~~-~~~~-----~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~i~~~d~~-------~~~~--~---~----  173 (309)
                        .+.+.+... +...     ..+ ....-..++.++ .+.++.+. ..+.|..+|+.       ....  +   .    
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence              255665333 1221     111 111222345566 45555555 45789999986       2221  0   0    


Q ss_pred             c-eEEEeCCCCCCCeEEEEccCCC-EEEEEeCCCcEEEEEC--CCCeEe--EEeeec-CC-----------CCCccc-eE
Q 021648          174 F-DIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDS--FRGTLL--STYNVK-PV-----------SRNSTL-EA  234 (309)
Q Consensus       174 ~-~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~dg~v~i~d~--~~~~~~--~~~~~~-~~-----------~~~~~~-~~  234 (309)
                      + .++... .......++++|+|+ ++++-.....|+.+|.  ..+...  ..+... ..           .-+... -+
T Consensus       300 ~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          300 FKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             EEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             cceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence            1 223332 223457899999999 4666677889998654  333321  111111 00           001122 24


Q ss_pred             EEC-------CCCCEEEEEcCCCcEEEEECCCCceEEEeecCC------------------------CCCcEEEECCC-e
Q 021648          235 SFS-------PEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD------------------------TEPPVIKWTPG-S  282 (309)
Q Consensus       235 ~~s-------p~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~------------------------~~v~~l~~~p~-~  282 (309)
                      +..       ++|..+++=.....|+.++ .++ .+.++.+..                        ..+..|++.++ +
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g  456 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE  456 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence            443       4567777767788999998 456 355543321                        12456999996 7


Q ss_pred             eEEEEccceEEEeeec
Q 021648          283 LMFVTGSSELSFWIPD  298 (309)
Q Consensus       283 ~~l~s~~~d~~~~~~~  298 (309)
                      .++++-....+++..+
T Consensus       457 ~lyVaD~~N~rIrki~  472 (496)
T 3kya_A          457 MFYVHDQVGHTIRTIS  472 (496)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEEeCCCCEEEEEE
Confidence            7777655554554433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.10  E-value=0.11  Score=44.63  Aligned_cols=227  Identities=11%  Similarity=0.083  Sum_probs=116.7

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCce--eeeee---ccccceeEEEEecC---CCEEEEEcCCCCC---ceeE
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTIN---SKKYGVDLVCFTSH---PTTVIYSSKNGWD---ESLR   81 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~~~~~s~~g~d---~~i~   81 (309)
                      .-..++|.|+|+++++ ..++.|++++  +++.  +..+.   ........++++|+   +..++.+.....+   ..|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4568999999986665 4569999998  3432  22221   12334677899987   5555554321111   5677


Q ss_pred             EEEccCCc-----eE-EEee---ecccCEEEEEecCCCCeEEEecC-------------CCcEEEeeCCCc---------
Q 021648           82 LLSLHDNK-----YL-RYFK---GHHDRVVSLSLCSSKDCFISGSL-------------DRTVLLWDQRAE---------  130 (309)
Q Consensus        82 ~~d~~~~~-----~~-~~~~---~h~~~v~~v~~~~~~~~l~s~s~-------------Dg~v~~Wd~~~~---------  130 (309)
                      .+++..++     .+ ..+.   +.......+.|.|||+..++-+.             .+.|.-.|....         
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            77776432     11 1122   11112368999999987776532             255666665421         


Q ss_pred             ---eeeeeeeecC--ceeEEECC-CCcEEEEEEC-CE--------EEEEECCC-CC---------cC--CceEEEeCCCC
Q 021648          131 ---KCQGLLRVQG--RPAAAYDD-QGLVFAVAFG-GY--------IRMFDARK-YE---------KG--PFDIFSVGGDI  183 (309)
Q Consensus       131 ---~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~-~~--------i~~~d~~~-~~---------~~--~~~~~~~~~~~  183 (309)
                         .....+....  -...++++ .+.++.+-.+ +.        |.+...-. +-         ..  ......... .
T Consensus       189 ~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~-~  267 (352)
T 2ism_A          189 RRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQ-G  267 (352)
T ss_dssp             CTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT-C
T ss_pred             CCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCC-C
Confidence               0011111111  12345666 5666665543 22        33332111 00         00  001111111 1


Q ss_pred             CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe----E--eEEeeecCCCCCccceEEECCCCCEEEEEc
Q 021648          184 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT----L--LSTYNVKPVSRNSTLEASFSPEGMFVISGS  247 (309)
Q Consensus       184 ~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~----~--~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s  247 (309)
                      .....++| .+|.++++....+.|...++....    .  ...+.  . ....+..+++.|||..+++..
T Consensus       268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~-~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--S-GFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--E-SSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--c-cCCCeeEEEECCCCcEEEEEe
Confidence            22345667 578888777777888887765322    1  11221  1 124567899999997766653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.07  E-value=0.12  Score=44.43  Aligned_cols=231  Identities=12%  Similarity=0.111  Sum_probs=117.0

Q ss_pred             ceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCcee---eee----eccccceeEEEEecC---CCEEEEEcCC-CC----
Q 021648           13 RISSMDFHKSSS-YLVTASDDESIRLYDVTAATCL---KTI----NSKKYGVDLVCFTSH---PTTVIYSSKN-GW----   76 (309)
Q Consensus        13 ~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~---~~~----~~~~~~v~~~~~~~~---~~~~~~~s~~-g~----   76 (309)
                      .-..|+|.|+|+ ++++ ...+.|++++.+ +...   ..+    .........++++|+   ...++.+... +.    
T Consensus        19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            456899999998 6654 467999999854 3321   111    112234567899885   4555544211 11    


Q ss_pred             CceeEEEEccCCc----eEE-Eeeec------ccCEEEEEecCCCCeEEEecC-------------CCcEEEeeCCCce-
Q 021648           77 DESLRLLSLHDNK----YLR-YFKGH------HDRVVSLSLCSSKDCFISGSL-------------DRTVLLWDQRAEK-  131 (309)
Q Consensus        77 d~~i~~~d~~~~~----~~~-~~~~h------~~~v~~v~~~~~~~~l~s~s~-------------Dg~v~~Wd~~~~~-  131 (309)
                      ...|..+++..+.    ..+ .+.+-      ......+.|.|||.+.++-+.             .|.|.-.|....- 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            1245556654321    111 12111      112357999999976666543             2456666654320 


Q ss_pred             -----------eeeeeeecC--ceeEEECC-CCcEEEEEECC----EEEEEECC-CC-----C-----------------
Q 021648          132 -----------CQGLLRVQG--RPAAAYDD-QGLVFAVAFGG----YIRMFDAR-KY-----E-----------------  170 (309)
Q Consensus       132 -----------~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~----~i~~~d~~-~~-----~-----------------  170 (309)
                                 ....+....  -..+++++ .+.++++-.+.    .|.+...- ++     .                 
T Consensus       177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~  256 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI  256 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred             CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence                       111111111  12345666 56666655431    33222110 00     0                 


Q ss_pred             cC--CceEEEeCCCCCCCeEEEEcc-------CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648          171 KG--PFDIFSVGGDISDANVVKFSN-------DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  241 (309)
Q Consensus       171 ~~--~~~~~~~~~~~~~~~~v~~s~-------dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~  241 (309)
                      ..  ....+....+ .....++|.+       +|.++++.-..+.|..+++..+...............+..+++.|||.
T Consensus       257 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~  335 (353)
T 2g8s_A          257 VAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY  335 (353)
T ss_dssp             CTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred             CCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence            00  0001111111 1234566643       578888887888888888776554433222111224677899999998


Q ss_pred             EEEEE
Q 021648          242 FVISG  246 (309)
Q Consensus       242 ~l~s~  246 (309)
                      .+++.
T Consensus       336 lyv~t  340 (353)
T 2g8s_A          336 LYVLT  340 (353)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.95  E-value=0.25  Score=46.07  Aligned_cols=225  Identities=12%  Similarity=0.089  Sum_probs=122.2

Q ss_pred             CCCcEEEEEcCCCc-eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce-EEEeeecccCEEEEEecC
Q 021648           31 DDESIRLYDVTAAT-CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-LRYFKGHHDRVVSLSLCS  108 (309)
Q Consensus        31 ~D~~v~iWd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~-~~~~~~h~~~v~~v~~~~  108 (309)
                      ....|+.-|+.... ....+...-.....+++.+....++++...  .+.|..+++..... ...+..-.....++++.+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~--~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~   93 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW   93 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETT--TTEEEEEEC-----CEEEECSSCSCEEEEEEET
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECC--CCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe
Confidence            35678888876542 111111122235678888888888887532  56788888876532 223333335688999988


Q ss_pred             C-CCeEEEecCCCcEEEeeCCCceeeeeee--ecCceeEEECCC-CcEEEEEEC--CEEEEEECCCCCcCCceEEEeCCC
Q 021648          109 S-KDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQ-GLVFAVAFG--GYIRMFDARKYEKGPFDIFSVGGD  182 (309)
Q Consensus       109 ~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~  182 (309)
                      . ++..++-...+.|.+-++........+.  ...-...++++. +.++-+..+  ..|...++....    ........
T Consensus        94 ~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~----~~~l~~~~  169 (619)
T 3s94_A           94 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS----RFIIINSE  169 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS----CEEEECSS
T ss_pred             cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc----eEEEEeCC
Confidence            5 4466666778899999976543322221  111123455554 444444432  456655553211    11111122


Q ss_pred             CCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 021648          183 ISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       183 ~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~  261 (309)
                      ....+.++++++ ++++++-...+.|..+|............   .......+++.++ +.+.+-...+.|...|..+++
T Consensus       170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~---~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG---SLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred             CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC---CCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence            345688999986 45555656678899998864333222111   1122346777666 555555677899999988776


Q ss_pred             eEEE
Q 021648          262 EVAS  265 (309)
Q Consensus       262 ~~~~  265 (309)
                      ....
T Consensus       246 ~~~~  249 (619)
T 3s94_A          246 GLRE  249 (619)
T ss_dssp             CCEE
T ss_pred             ccEE
Confidence            5443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.94  E-value=0.16  Score=43.72  Aligned_cols=207  Identities=12%  Similarity=0.255  Sum_probs=106.4

Q ss_pred             eEEEEeCCCCCEEEEee------------CCCcEEEEEcCC--Cceeeeee--c-----cccceeEEEEec--CCC-EEE
Q 021648           14 ISSMDFHKSSSYLVTAS------------DDESIRLYDVTA--ATCLKTIN--S-----KKYGVDLVCFTS--HPT-TVI   69 (309)
Q Consensus        14 V~~i~~s~~~~~l~t~s------------~D~~v~iWd~~~--~~~~~~~~--~-----~~~~v~~~~~~~--~~~-~~~   69 (309)
                      .-.|...|+|..+++++            .+|.|-++|..+  ++. +.+.  +     .......+.+.+  +++ +++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            44667788876665552            689999999873  222 2222  1     123345566655  344 455


Q ss_pred             EEcCCCCCceeEEEEccCCc-e---EEEeeec-ccCEEEEEecCCCCeEEEecC---CCcEEEeeCCCceeeeeeeecCc
Q 021648           70 YSSKNGWDESLRLLSLHDNK-Y---LRYFKGH-HDRVVSLSLCSSKDCFISGSL---DRTVLLWDQRAEKCQGLLRVQGR  141 (309)
Q Consensus        70 ~~s~~g~d~~i~~~d~~~~~-~---~~~~~~h-~~~v~~v~~~~~~~~l~s~s~---Dg~v~~Wd~~~~~~~~~~~~~~~  141 (309)
                      .+.....+.++.+|++..+. .   +..+.+. -...+.+.+.++|++.++...   |.....|+.        +  ...
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~--------~--~~~  200 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEM--------H--LGL  200 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHH--------H--TTC
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchh--------h--ccC
Confidence            55433336788898876532 2   2333332 245788888888876666531   110001100        0  000


Q ss_pred             eeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEE-EeCCCcEEEEECCC-CeEeE
Q 021648          142 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFR-GTLLS  219 (309)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~-~~~dg~v~i~d~~~-~~~~~  219 (309)
                            +.         +.+..+|..     ......  ....-.+.+++|||++.+.. -+..++|+.||... +++..
T Consensus       201 ------~~---------g~vyr~d~~-----~~~~~~--~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~  258 (355)
T 3sre_A          201 ------AW---------SFVTYYSPN-----DVRVVA--EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP  258 (355)
T ss_dssp             ------CC---------EEEEEECTT-----CCEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             ------Cc---------cEEEEEECC-----eEEEee--cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec
Confidence                  00         111111110     000000  01123478999999976554 55678999999753 33322


Q ss_pred             --EeeecCCCCCccceEEECC-CCCEEEEEcCCC-cEEEEEC
Q 021648          220 --TYNVKPVSRNSTLEASFSP-EGMFVISGSGDG-SVYAWSV  257 (309)
Q Consensus       220 --~~~~~~~~~~~~~~~~~sp-~g~~l~s~s~Dg-~i~vwd~  257 (309)
                        .+..    ....-.+++.+ +|+..+++..++ .|..|+.
T Consensus       259 ~~~~~~----~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          259 LRVLSF----DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEEEEC----SSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             CEEEeC----CCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence              2221    23344678888 599888776443 4444443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.93  E-value=0.17  Score=43.64  Aligned_cols=234  Identities=12%  Similarity=0.106  Sum_probs=121.5

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc-eeeeee---ccccceeEEEEecC---CCEEEEEcCC-CCC----ce
Q 021648           12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CLKTIN---SKKYGVDLVCFTSH---PTTVIYSSKN-GWD----ES   79 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~~~~~s~~-g~d----~~   79 (309)
                      ..-..++|.|+|+++++ ..++.|+++| .+++ .+..+.   ........++++|+   +..++++... ..+    ..
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            34568999999986655 4569999887 3454 222211   12234677899887   5555544321 112    46


Q ss_pred             eEEEEccCC--c---e--E-EEeee-cccCEEEEEecCCCCeEEEecC-------------CCcEEEeeCCCce------
Q 021648           80 LRLLSLHDN--K---Y--L-RYFKG-HHDRVVSLSLCSSKDCFISGSL-------------DRTVLLWDQRAEK------  131 (309)
Q Consensus        80 i~~~d~~~~--~---~--~-~~~~~-h~~~v~~v~~~~~~~~l~s~s~-------------Dg~v~~Wd~~~~~------  131 (309)
                      |..++...+  .   .  + ..+.. .......+.|.|||++.++-+.             .|.|.-.+....-      
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf  186 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF  186 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence            777776544  1   1  1 11211 1112457899999987777542             2455555543210      


Q ss_pred             -eeeeeee--cCceeEEECC-CCcEEEEEEC----CEEEEEECCC-C-------C--cC--CceEEEeCCCCCCCeEEEE
Q 021648          132 -CQGLLRV--QGRPAAAYDD-QGLVFAVAFG----GYIRMFDARK-Y-------E--KG--PFDIFSVGGDISDANVVKF  191 (309)
Q Consensus       132 -~~~~~~~--~~~~~~~~~~-~~~~~~~~~~----~~i~~~d~~~-~-------~--~~--~~~~~~~~~~~~~~~~v~~  191 (309)
                       ....+..  ..-..+++++ .+.++.+-.+    ..|.+...-. +       .  ..  ................++|
T Consensus       187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~  266 (354)
T 3a9g_A          187 PNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASF  266 (354)
T ss_dssp             TTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEE
T ss_pred             CCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEE
Confidence             0011111  1122456666 5666655432    2344433211 0       0  00  0011222111123456777


Q ss_pred             -------ccCCCEEEEEeCCCcEEEEECCCC-eEeEEeeecCCCCCccceEEECCCCCEEEEEc
Q 021648          192 -------SNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  247 (309)
Q Consensus       192 -------s~dg~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s  247 (309)
                             ..+|.++++....+.|..+++... ...............+..+++.|||..+++..
T Consensus       267 y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          267 VHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             ECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence                   367888888878888988887642 33221111111234677899999997776664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.87  E-value=0.35  Score=46.45  Aligned_cols=181  Identities=11%  Similarity=0.000  Sum_probs=95.0

Q ss_pred             CCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC----ceEEEeeecccCEEEEEe
Q 021648           31 DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN----KYLRYFKGHHDRVVSLSL  106 (309)
Q Consensus        31 ~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~----~~~~~~~~h~~~v~~v~~  106 (309)
                      ....|+..++........+... ..+..+++.+....++++...  .+.|+.+++...    .....+........+|++
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~~~-~~~~gl~~d~~~~~lY~sD~~--~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv  478 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  478 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEECSC-SSEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             cccceeEeeccCCcceeeecCC-CceEEEeecccCCeeEEeecc--ceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence            4467888887755443333332 335677888777777776532  567888887652    223333323345566776


Q ss_pred             cCCC-CeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCC
Q 021648          107 CSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD  185 (309)
Q Consensus       107 ~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  185 (309)
                      .+.+ ++.++-...+.|.+.++........+                                           ......
T Consensus       479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~-------------------------------------------~~~l~~  515 (791)
T 3m0c_C          479 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-------------------------------------------RENGSK  515 (791)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEEEE-------------------------------------------ECTTCC
T ss_pred             eecCCcEEEEecCCCeEEEEeCCCCeEEEEE-------------------------------------------eCCCCC
Confidence            6544 34455555666666665432211000                                           001122


Q ss_pred             CeEEEEccC-CCEEEEEeCC-CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE-cCCCcEEEEECCCC
Q 021648          186 ANVVKFSND-GRLMLLTTME-GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVYAWSVRSG  260 (309)
Q Consensus       186 ~~~v~~s~d-g~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~-s~Dg~i~vwd~~~~  260 (309)
                      ...|+++|. |.++++-..+ +.|...++.... ...+..  ..-.....+++.|.++.|+.+ .....|...++...
T Consensus       516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv~--~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEEEEe--CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            456777775 4444444333 677777765332 222211  111334568888766655555 45567888888543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.62  E-value=0.26  Score=41.68  Aligned_cols=196  Identities=6%  Similarity=-0.084  Sum_probs=109.0

Q ss_pred             CceeEEEEccCCc--eEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeee-eeee--cCceeEEECC-C
Q 021648           77 DESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQG-LLRV--QGRPAAAYDD-Q  149 (309)
Q Consensus        77 d~~i~~~d~~~~~--~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~-~~~~--~~~~~~~~~~-~  149 (309)
                      ...|+..|+....  ....+. ....+.+++|.+. ++.+++-...+.|..+++....... .+..  ..-...+++. .
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            4578999987753  222232 2345678999874 5566777778899999987653211 1111  1122345553 3


Q ss_pred             CcEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEe-CCCcEEEEECCCCeEeEEeeecCC
Q 021648          150 GLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPV  226 (309)
Q Consensus       150 ~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~  226 (309)
                      +.++.+. ..+.|.++++....    ..............+++.|.+ .++.+-. ..+.|..+++.. .....+...  
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~----~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~--  163 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSL----RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINS--  163 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCS----CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECS--
T ss_pred             CeEEEEECCCCEEEEEECCCCc----EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEEC--
Confidence            3333333 35788888865321    111122233456789999865 4444442 367898888753 322222111  


Q ss_pred             CCCccceEEECCCCCEEEEE-cCCCcEEEEECCCCceEEEeec-CCCCCcEEEECCC
Q 021648          227 SRNSTLEASFSPEGMFVISG-SGDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPG  281 (309)
Q Consensus       227 ~~~~~~~~~~sp~g~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~~p~  281 (309)
                      .-.....++++|+++.|+-+ +..+.|..+|+.... ...+.. .-..+..+++..+
T Consensus       164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P~glav~~~  219 (318)
T 3sov_A          164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFED  219 (318)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSCCSCEEEEEEETT
T ss_pred             CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecCCCCCceEEEEeCC
Confidence            11234579999976666555 667899999986432 222221 2233455665433

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.56  E-value=0.33  Score=42.69  Aligned_cols=103  Identities=13%  Similarity=0.170  Sum_probs=66.7

Q ss_pred             CCCEEEEeeCCCcEEEEEcCCCceeeeeecc---cc-ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc--------
Q 021648           22 SSSYLVTASDDESIRLYDVTAATCLKTINSK---KY-GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--------   89 (309)
Q Consensus        22 ~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~---~~-~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~--------   89 (309)
                      +|..++.+ .++.||.=++.....-+.+...   .. .+..+..+|+|+.++...    +.+|.+..+-.+.        
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g----~~~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN----DNEIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC----SSEEEEEECCTTCSCCCCHHH
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec----CCeEEEEEecCccccCccccc
Confidence            44444444 3566666666543334444433   23 467789999999888764    5688888875221        


Q ss_pred             ----eEEEeee------cccCEEEEEecCC---CCeEEEecCCCcEEEeeCCC
Q 021648           90 ----YLRYFKG------HHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRA  129 (309)
Q Consensus        90 ----~~~~~~~------h~~~v~~v~~~~~---~~~l~s~s~Dg~v~~Wd~~~  129 (309)
                          ..+.+.-      ...+|..+.|+|-   +..|++-..|++||+||+..
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence                1223321      2567999999984   45788888899999999865

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.53  E-value=0.045  Score=47.18  Aligned_cols=103  Identities=16%  Similarity=0.205  Sum_probs=62.3

Q ss_pred             CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeec--CCCCCccceEEECCC---CCEEEEE-cCC-----CcE
Q 021648          184 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK--PVSRNSTLEASFSPE---GMFVISG-SGD-----GSV  252 (309)
Q Consensus       184 ~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~sp~---g~~l~s~-s~D-----g~i  252 (309)
                      .....+++.|||+++++- .+|.|++++  .++........  .........++|+|+   +++|+.+ ...     ..|
T Consensus        31 ~~P~~ia~~pdG~l~V~e-~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAE-RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEEE-TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEEe-CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            345789999999976664 569999998  44422111111  111234567999998   5555544 322     678


Q ss_pred             EEEECCCCc-----eE-EEeec---CCCCCcEEEECCCeeEEEEcc
Q 021648          253 YAWSVRSGK-----EV-ASWMS---FDTEPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       253 ~vwd~~~~~-----~~-~~~~~---~~~~v~~l~~~p~~~~l~s~~  289 (309)
                      ..|+....+     .+ ..+..   .......++|.|||.+.++.+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            888886432     11 22331   112346899999998887753

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.49  E-value=0.29  Score=40.62  Aligned_cols=228  Identities=10%  Similarity=0.127  Sum_probs=108.6

Q ss_pred             CCCEEEEee-CC-----CcEEEEEcCCCceee--eeeccccceeEEEEecCCCEEEEEcCCC--CCceeEEEEccCCc--
Q 021648           22 SSSYLVTAS-DD-----ESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNK--   89 (309)
Q Consensus        22 ~~~~l~t~s-~D-----~~v~iWd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~s~~g--~d~~i~~~d~~~~~--   89 (309)
                      ++.+++.|+ .+     ..+.+||..+++-..  .+.....  ...+...++..++.+...+  .-..+.+||+.+++  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~--~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRR--YVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCB--SCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhc--cccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            456777777 33     377888987654222  1111111  1112223343334332211  12468889987765  


Q ss_pred             -eEEEeeecc--cCEEEEEecCCCCeEEEecCCC-----cEEEeeCCCceeeeeeeecC---ceeEEECCCCcEEEEEEC
Q 021648           90 -YLRYFKGHH--DRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVAFG  158 (309)
Q Consensus        90 -~~~~~~~h~--~~v~~v~~~~~~~~l~s~s~Dg-----~v~~Wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  158 (309)
                       -...-.-..  ..-..+.  .+++.++.|+.++     .+.++|+.+.+....-.++.   ...........++.++.+
T Consensus        92 ~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  169 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYD  169 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBC
T ss_pred             eeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCC
Confidence             222111111  1111122  2567777777543     57788887766443222211   111222222233333332


Q ss_pred             -----CEEEEEECCCCCcCCceEEE-eCCCCCCCeEEEEccCCCEEEEEeCC-----CcEEEEECCCCeEeEEeeecCCC
Q 021648          159 -----GYIRMFDARKYEKGPFDIFS-VGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVS  227 (309)
Q Consensus       159 -----~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~v~~s~dg~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~  227 (309)
                           ..+..||+...+   ..... .........++  .-++++++.|+.+     ..+.+||+.+.+-...... +..
T Consensus       170 ~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~  243 (301)
T 2vpj_A          170 GLNILNSVEKYDPHTGH---WTNVTPMATKRSGAGVA--LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM-TTP  243 (301)
T ss_dssp             SSCBCCCEEEEETTTTE---EEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC-SSC
T ss_pred             CCcccceEEEEeCCCCc---EEeCCCCCcccccceEE--EECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC-CCc
Confidence                 457778865421   11110 00011111222  2367888888764     4688999987764432211 111


Q ss_pred             CCccceEEECCCCCEEEEEcCC-----CcEEEEECCCCc
Q 021648          228 RNSTLEASFSPEGMFVISGSGD-----GSVYAWSVRSGK  261 (309)
Q Consensus       228 ~~~~~~~~~sp~g~~l~s~s~D-----g~i~vwd~~~~~  261 (309)
                        .....+..-+++.++.|+.+     ..+.+||..+.+
T Consensus       244 --r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          244 --RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             --CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             --ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence              11111222377788888766     367889987654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.38  E-value=0.41  Score=41.09  Aligned_cols=39  Identities=13%  Similarity=0.091  Sum_probs=29.2

Q ss_pred             EeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCce
Q 021648           93 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK  131 (309)
Q Consensus        93 ~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~  131 (309)
                      .+..-....+.++|.||++.+++--..|.|++++...++
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~   64 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR   64 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence            344445677899999999988887668999988755443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.33  E-value=0.38  Score=42.94  Aligned_cols=33  Identities=6%  Similarity=0.111  Sum_probs=23.8

Q ss_pred             ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc
Q 021648           98 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE  130 (309)
Q Consensus        98 ~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~  130 (309)
                      ....++++|.|+|+.+++-...+.|++++..++
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g   58 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESG   58 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence            346789999999998887654456887765433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.18  E-value=0.82  Score=42.58  Aligned_cols=119  Identities=5%  Similarity=-0.036  Sum_probs=75.6

Q ss_pred             cceEEEEeCCCC-CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648           12 GRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   90 (309)
Q Consensus        12 ~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~   90 (309)
                      .....+++++.+ ++..+-...+.|.+.+.+.......+...-.....+++.|....++++.. +....|...++.....
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~-g~~~~I~r~~~dG~~~  162 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIERAGMDGSSR  162 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC-SSSCEEEEEETTSCSC
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc-CCCCEEEEEECCCCce
Confidence            457789999854 45666667789999998754332222222234567889888777877753 2245677777765433


Q ss_pred             EEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCce
Q 021648           91 LRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEK  131 (309)
Q Consensus        91 ~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~  131 (309)
                      .......-...+++++.++++ ..++=...+.|...|+....
T Consensus       163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~  204 (619)
T 3s94_A          163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN  204 (619)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE
T ss_pred             EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc
Confidence            333333445678999998655 44555667788888876543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.12  E-value=0.11  Score=44.83  Aligned_cols=104  Identities=15%  Similarity=0.266  Sum_probs=61.6

Q ss_pred             CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe-EeEEeeecCCCCCccceEEECCC---CCEEEEEcC----C----Cc
Q 021648          184 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPE---GMFVISGSG----D----GS  251 (309)
Q Consensus       184 ~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~sp~---g~~l~s~s~----D----g~  251 (309)
                      .....+++.|||+++++- .+|.|+++|. .+. .+..+............++|+|+   +.+|+.+..    +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V~e-~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTE-RPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEEe-CCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            445788999999966654 5599999973 454 11111111111234567999998   555544432    3    56


Q ss_pred             EEEEECCCC--c-----eE-EEeecC-CCCCcEEEECCCeeEEEEcc
Q 021648          252 VYAWSVRSG--K-----EV-ASWMSF-DTEPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       252 i~vwd~~~~--~-----~~-~~~~~~-~~~v~~l~~~p~~~~l~s~~  289 (309)
                      |..|+....  .     .+ ..+... ......|+|.|||.++++.+
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            888887654  1     11 122211 11346799999999888754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.07  E-value=0.55  Score=40.29  Aligned_cols=29  Identities=14%  Similarity=0.225  Sum_probs=22.1

Q ss_pred             ccCEEEEEecCCCC-eEEEecCCCcEEEeeC
Q 021648           98 HDRVVSLSLCSSKD-CFISGSLDRTVLLWDQ  127 (309)
Q Consensus        98 ~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~  127 (309)
                      ....+.++|.|+++ .+++- ..|.|++++.
T Consensus        17 l~~P~~i~~~pdG~~l~V~e-~~G~i~~~~~   46 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITL-RGGELRHWQA   46 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEE-TTTEEEEEET
T ss_pred             CCCcEEEEEcCCCCEEEEEe-CCceEEEEeC
Confidence            34578999999998 66554 5788888874

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.01  E-value=0.61  Score=39.59  Aligned_cols=216  Identities=9%  Similarity=0.046  Sum_probs=118.4

Q ss_pred             ecCCCcceEEEEeCCCC-CEEEEeeCCCcEEEEEcCCCceeee-eec----c--ccceeEEEE---ecCCCEEEEEcCC-
Q 021648            7 FRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKT-INS----K--KYGVDLVCF---TSHPTTVIYSSKN-   74 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~~~~~s~~-   74 (309)
                      +.+.+---.+++|++.. .++++.-..++|..||...+..... +..    .  ...+..+.+   .+++..++++ .. 
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~-~~~   86 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVM-KNA   86 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEE-EET
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEE-ccc
Confidence            33444445578998754 4455555899999999976543322 322    1  112456677   4554333322 21 


Q ss_pred             ------C----CCceeEEEEcc---CCceEEEee--ecc-----------cCEEEEEecCCCCeEEEecCC-CcEEEeeC
Q 021648           75 ------G----WDESLRLLSLH---DNKYLRYFK--GHH-----------DRVVSLSLCSSKDCFISGSLD-RTVLLWDQ  127 (309)
Q Consensus        75 ------g----~d~~i~~~d~~---~~~~~~~~~--~h~-----------~~v~~v~~~~~~~~l~s~s~D-g~v~~Wd~  127 (309)
                            |    -+..+..+|+.   +++.+....  ...           .....++..++|+.-++++.- +.|...+.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                  0    15678889998   777655443  222           247788888999888887766 55554443


Q ss_pred             CCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcE
Q 021648          128 RAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHI  207 (309)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v  207 (309)
                      ...                             .+..|.+....         .......+.+++.|+|+.|++....|.+
T Consensus       167 dG~-----------------------------~~~~~~~~~~~---------~~~~~G~nGIv~~pdg~~Liv~~~~g~L  208 (334)
T 2p9w_A          167 DGK-----------------------------TVSTFAWESGN---------GGQRPGYSGITFDPHSNKLIAFGGPRAL  208 (334)
T ss_dssp             TSC-----------------------------CEEEEEECCCC---------SSSCCSCSEEEEETTTTEEEEESSSSSE
T ss_pred             CCC-----------------------------EEeeeeecCCC---------cccccCcceEEEeCCCCEEEEEcCCCeE
Confidence            211                             11222221100         0011235788999999998888779999


Q ss_pred             EEEECCCCeE--eEEee-ecCCCCCccceE-EECCCCCE-EEEEcCCCcEEEEECCCCc
Q 021648          208 HVLDSFRGTL--LSTYN-VKPVSRNSTLEA-SFSPEGMF-VISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       208 ~i~d~~~~~~--~~~~~-~~~~~~~~~~~~-~~sp~g~~-l~s~s~Dg~i~vwd~~~~~  261 (309)
                      ..+|+.+...  +..-. .........-.+ .---+|+. +++.+..+.+.+.+...++
T Consensus       209 ~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~  267 (334)
T 2p9w_A          209 TAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNWK  267 (334)
T ss_dssp             EEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTTS
T ss_pred             EEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCCcc
Confidence            9999874322  11100 000000111111 21236766 5555666766666665543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.81  E-value=0.66  Score=38.43  Aligned_cols=228  Identities=12%  Similarity=0.150  Sum_probs=106.0

Q ss_pred             CCEEEEeeCC----CcEEEEEcCCCceeee--eeccccceeEEEEecCCCEEEEEcCCC--CCceeEEEEccCCceEEEe
Q 021648           23 SSYLVTASDD----ESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNKYLRYF   94 (309)
Q Consensus        23 ~~~l~t~s~D----~~v~iWd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g--~d~~i~~~d~~~~~~~~~~   94 (309)
                      +.+++.|+.+    ..+..||..+.+-...  +....... .++ ..++..++.+...+  .-..+.+||..+++-...-
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            4566677654    3678888876542221  11111111 112 22333333332111  1245778888776522211


Q ss_pred             eecccCE-EEEEecCCCCeEEEecCCC-----cEEEeeCCCceeeeeeeecC---ceeEEECCCCcEEEEEE-------C
Q 021648           95 KGHHDRV-VSLSLCSSKDCFISGSLDR-----TVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVAF-------G  158 (309)
Q Consensus        95 ~~h~~~v-~~v~~~~~~~~l~s~s~Dg-----~v~~Wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------~  158 (309)
                      .-...+- .++.. -+++.++.|+.++     .+.++|+.+.+....-.++.   ....+......++.++.       -
T Consensus        94 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~  172 (302)
T 2xn4_A           94 NMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCL  172 (302)
T ss_dssp             CCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEEC
T ss_pred             CCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccc
Confidence            1011110 11111 2567777777654     57788887776543322211   11122222222333332       1


Q ss_pred             CEEEEEECCCCCcCCceEE-EeCCCCCCCeEEEEccCCCEEEEEeCC-----CcEEEEECCCCeEeEEeeecCCCCCccc
Q 021648          159 GYIRMFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTL  232 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~v~~s~dg~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~  232 (309)
                      ..+..||+...+   .... ...........+  .-++++++.|+.+     ..+.+||+.+.+-...... +..... .
T Consensus       173 ~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~-~  245 (302)
T 2xn4_A          173 STVECYNATTNE---WTYIAEMSTRRSGAGVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM-NMCRRN-A  245 (302)
T ss_dssp             CCEEEEETTTTE---EEEECCCSSCCBSCEEE--EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCC-SSCCBS-C
T ss_pred             cEEEEEeCCCCc---EEECCCCccccccccEE--EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCC-CCcccc-C
Confidence            347777765421   1110 000011111222  2367888888765     3688999887654432211 111111 1


Q ss_pred             eEEECCCCCEEEEEcCCC-----cEEEEECCCCc
Q 021648          233 EASFSPEGMFVISGSGDG-----SVYAWSVRSGK  261 (309)
Q Consensus       233 ~~~~sp~g~~l~s~s~Dg-----~i~vwd~~~~~  261 (309)
                      . +...+++.++.|+.++     .+.+||..+.+
T Consensus       246 ~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          246 G-VCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             E-EEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             e-EEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            1 2223778888888664     48999998754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.71  E-value=0.74  Score=38.23  Aligned_cols=229  Identities=8%  Similarity=0.044  Sum_probs=107.8

Q ss_pred             CCEEEEeeC--CCcEEEEEcCCCceee--eeeccccceeEEEEecCCCEEEEEcCC-CCCceeEEEEccCCceEEEeeec
Q 021648           23 SSYLVTASD--DESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKN-GWDESLRLLSLHDNKYLRYFKGH   97 (309)
Q Consensus        23 ~~~l~t~s~--D~~v~iWd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~s~~-g~d~~i~~~d~~~~~~~~~~~~h   97 (309)
                      +.+++.|+.  ...+.+||..+++-..  .+........  +...++..++.+... ..-..+.+||+.+++-...-.-.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~--~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAA--CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCE--EEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeE--EEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            345666665  3578888987754322  1111111111  122234333333211 11256788898877532221111


Q ss_pred             ccCEEEEEecCCCCeEEEecCC------CcEEEeeCCCceeeeeeeecC---ceeEEECCCCcEEEEEE---------CC
Q 021648           98 HDRVVSLSLCSSKDCFISGSLD------RTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVAF---------GG  159 (309)
Q Consensus        98 ~~~v~~v~~~~~~~~l~s~s~D------g~v~~Wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---------~~  159 (309)
                      ..+.......-+++.++.|+.+      ..+.++|+.+.+....-.++.   ....+......++.++.         -.
T Consensus        90 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  169 (306)
T 3ii7_A           90 TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN  169 (306)
T ss_dssp             SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECC
T ss_pred             ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccc
Confidence            1111111112266777888766      468888988776443222211   11122222223333332         23


Q ss_pred             EEEEEECCCCCcCCceEEE-eCCCCCCCeEEEEccCCCEEEEEeCC-----CcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648          160 YIRMFDARKYEKGPFDIFS-VGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLE  233 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~v~~s~dg~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~  233 (309)
                      .+..||+....   ..... ..........+.  -++++++.|+.+     ..+.+||+.+.+-...-. .+........
T Consensus       170 ~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~  243 (306)
T 3ii7_A          170 SCEVYDPATET---WTELCPMIEARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP-MPWKGVTVKC  243 (306)
T ss_dssp             CEEEEETTTTE---EEEECCCSSCCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCC-CSCCBSCCEE
T ss_pred             eEEEeCCCCCe---EEECCCccchhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC-CCCCccceeE
Confidence            46777765421   11110 000111112222  267888887754     357889988765432211 1111111112


Q ss_pred             EEECCCCCEEEEEcCC-----CcEEEEECCCCc
Q 021648          234 ASFSPEGMFVISGSGD-----GSVYAWSVRSGK  261 (309)
Q Consensus       234 ~~~sp~g~~l~s~s~D-----g~i~vwd~~~~~  261 (309)
                      +.+  +++.++.|+.+     ..+.+||..+.+
T Consensus       244 ~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          244 AAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             EEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            223  77888888855     468999998754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.70  E-value=0.76  Score=38.30  Aligned_cols=229  Identities=12%  Similarity=0.102  Sum_probs=106.7

Q ss_pred             CCCCEEEEeeCC----CcEEEEEcCCCceeee--eeccccceeEEEEecCCCEEEEEcC----C--CCCceeEEEEccCC
Q 021648           21 KSSSYLVTASDD----ESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSK----N--GWDESLRLLSLHDN   88 (309)
Q Consensus        21 ~~~~~l~t~s~D----~~v~iWd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~----~--g~d~~i~~~d~~~~   88 (309)
                      -++.+++-||.+    ..+.+||..+++-...  +....... .++ ..++..++.+..    .  ..-..+.+||+.++
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            356777777742    3678889876543221  11111111 112 223333333221    0  01245778888776


Q ss_pred             ceEEE--eeecccCEEEEEecCCCCeEEEecCC-----CcEEEeeCCCceeeeeeeec----CceeEEECCCCcEEEEEE
Q 021648           89 KYLRY--FKGHHDRVVSLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVAF  157 (309)
Q Consensus        89 ~~~~~--~~~h~~~v~~v~~~~~~~~l~s~s~D-----g~v~~Wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  157 (309)
                      +-...  +......-..+.  -+++.++.|+.+     ..+.++|+.+.+....-.++    ....... ....++.++.
T Consensus       101 ~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~  177 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGF  177 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred             eEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCC
Confidence            42211  111111111122  256777777654     36778888777644332221    1112222 2223333333


Q ss_pred             C-----CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC-----CcEEEEECCCCeEeEEeeecCCC
Q 021648          158 G-----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVS  227 (309)
Q Consensus       158 ~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~  227 (309)
                      +     +.+..||+...+=..  +...........++.+  ++++++.|+.+     ..+.+||+.+.+-..... .+..
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~--~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~  252 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRM--ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP-MKHR  252 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEE--CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC-CSSC
T ss_pred             CCCCcCceEEEEeCCCCeEee--CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC-CCCC
Confidence            2     457778765421000  0000001111222223  77888888765     468899988765433211 1111


Q ss_pred             CCccceEEECCCCCEEEEEcCC-----CcEEEEECCCCc
Q 021648          228 RNSTLEASFSPEGMFVISGSGD-----GSVYAWSVRSGK  261 (309)
Q Consensus       228 ~~~~~~~~~sp~g~~l~s~s~D-----g~i~vwd~~~~~  261 (309)
                      ... ..++. -+++.++.|+.+     ..+.+||+.+.+
T Consensus       253 r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          253 RSA-LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             CBS-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ccc-eEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            111 12222 367788888755     357888887654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.68  E-value=1.4  Score=41.14  Aligned_cols=278  Identities=6%  Similarity=0.034  Sum_probs=149.6

Q ss_pred             cceEEEEeCCCCCEEEEeeC--CCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648           12 GRISSMDFHKSSSYLVTASD--DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   89 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~--D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~   89 (309)
                      .....|+++|...+|.-..+  ...|...+.+ |...+.+...-.....+++.+++..++++..  ..+.|...|+....
T Consensus       123 ~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~  199 (628)
T 4a0p_A          123 DSPRALALDPAEGFMYWTEWGGKPKIDRAAMD-GSERTTLVPNVGRANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLN  199 (628)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSCSSEEEEEEETTTTEEEEEET--TTTEEEEEETTSCS
T ss_pred             CCcccEEEccCCCeEEEeCCCCCCEEEEEeCC-CCceEEEECCCCCcceEEEccccCEEEEEEC--CCCEEEEEcCCCCc
Confidence            34578999985444433332  3455555655 3333333333345678899998888888753  26789999987644


Q ss_pred             eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec----------------C---------ce--
Q 021648           90 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----------------G---------RP--  142 (309)
Q Consensus        90 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~----------------~---------~~--  142 (309)
                      . ..+........++++.. ++.++|-...+.|...|..+++....+...                .         ..  
T Consensus       200 ~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~  277 (628)
T 4a0p_A          200 R-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH  277 (628)
T ss_dssp             C-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSS
T ss_pred             e-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcch
Confidence            3 44555555667888765 456666666788888886554322221100                0         00  


Q ss_pred             eEEECC---------CC--------------cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEE
Q 021648          143 AAAYDD---------QG--------------LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLM  198 (309)
Q Consensus       143 ~~~~~~---------~~--------------~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l  198 (309)
                      .+...+         .+              .++..+....|+-..+....... ....+ .....+..++|.+.. +++
T Consensus       278 ~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~-~~l~~-~~~~~~~~ld~d~~~~~iy  355 (628)
T 4a0p_A          278 LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPD-IILPI-HSLRNVRAIDYDPLDKQLY  355 (628)
T ss_dssp             EEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCC-EECCC-TTCSCEEEEEEETTTTEEE
T ss_pred             hhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCce-EEEEe-hhcCCceEEEEecCCCeEE
Confidence            000001         11              12222233344444332111100 01111 122346778888854 445


Q ss_pred             EEEeCCCcEEEEECCCCeEeEEeeec--C-CCCCccceEEECCCCCEE-EEEcCCCcEEEEECCCCceEEEee-cCCCCC
Q 021648          199 LLTTMEGHIHVLDSFRGTLLSTYNVK--P-VSRNSTLEASFSPEGMFV-ISGSGDGSVYAWSVRSGKEVASWM-SFDTEP  273 (309)
Q Consensus       199 ~~~~~dg~v~i~d~~~~~~~~~~~~~--~-~~~~~~~~~~~sp~g~~l-~s~s~Dg~i~vwd~~~~~~~~~~~-~~~~~v  273 (309)
                      .+-...+.|+.++.........+...  . .....+..+++.+.++.| .+-+..+.|.+.++. ++....+. ..-..+
T Consensus       356 ~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~P  434 (628)
T 4a0p_A          356 WIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRP  434 (628)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCE
T ss_pred             EEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCce
Confidence            55556788888876532221111100  0 011245678998886655 466778899999985 55444443 223467


Q ss_pred             cEEEECC-CeeEEEEccc-eE-EEeee
Q 021648          274 PVIKWTP-GSLMFVTGSS-EL-SFWIP  297 (309)
Q Consensus       274 ~~l~~~p-~~~~l~s~~~-d~-~~~~~  297 (309)
                      ..|++.| ++.++.+-.. .. +++..
T Consensus       435 r~iavdp~~g~ly~tD~g~~~~~I~r~  461 (628)
T 4a0p_A          435 RAVVVNPEKGYMYFTNLQERSPKIERA  461 (628)
T ss_dssp             EEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred             eeEEEecCCCeEEEeecCCCCCeEEEE
Confidence            8899999 7887777432 22 56644

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.38  E-value=0.96  Score=37.36  Aligned_cols=172  Identities=13%  Similarity=0.138  Sum_probs=85.2

Q ss_pred             CCCeEEEecCC-----CcEEEeeCCCce---eeeeeeecC---ceeEEECCCCcEEEE-EEC-----CEEEEEECCCCCc
Q 021648          109 SKDCFISGSLD-----RTVLLWDQRAEK---CQGLLRVQG---RPAAAYDDQGLVFAV-AFG-----GYIRMFDARKYEK  171 (309)
Q Consensus       109 ~~~~l~s~s~D-----g~v~~Wd~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~-~~~-----~~i~~~d~~~~~~  171 (309)
                      +++.++.|+.+     ..+.++|+.+.+   ....-.++.   ....+.. ++.++.. +.+     ..+.+||+...+=
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W  140 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQW  140 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence            56777778765     468889987766   332211111   1112222 2333333 322     4677888654321


Q ss_pred             CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC-----CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648          172 GPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  246 (309)
Q Consensus       172 ~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~  246 (309)
                      .  .+...........++.  -++++++.|+.+     ..+.+||+.+.+-...-.. +...... . +..-+++.++.|
T Consensus       141 ~--~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~-~-~~~~~~~i~v~G  213 (301)
T 2vpj_A          141 S--MLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM-ATKRSGA-G-VALLNDHIYVVG  213 (301)
T ss_dssp             E--EEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCC-SSCCBSC-E-EEEETTEEEEEC
T ss_pred             E--ECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCC-Ccccccc-e-EEEECCEEEEEe
Confidence            0  1111111111222222  378888888765     4588899887654432111 1111111 1 222367788888


Q ss_pred             cCC-----CcEEEEECCCCceE--EEeecCCCCCcEEEECCCeeEEEEccc
Q 021648          247 SGD-----GSVYAWSVRSGKEV--ASWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       247 s~D-----g~i~vwd~~~~~~~--~~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      +.+     ..+.+||+.+.+-.  ..++........+.  -++++++.|+.
T Consensus       214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~  262 (301)
T 2vpj_A          214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGY  262 (301)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred             CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCc
Confidence            765     46899999876432  22211111112222  26777787774

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.18  E-value=0.38  Score=42.95  Aligned_cols=106  Identities=13%  Similarity=0.265  Sum_probs=61.3

Q ss_pred             CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC-----CCCccceEEECCC---CCEEEEE-cC------
Q 021648          184 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-----SRNSTLEASFSPE---GMFVISG-SG------  248 (309)
Q Consensus       184 ~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~sp~---g~~l~s~-s~------  248 (309)
                      .....++|.|+|+++++-...+.|++++...+...........     .......++|+||   +++|... +.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            4457899999999888766556899888655543222111111     1234557999995   5454444 32      


Q ss_pred             ------CCcEEEEECCCC--c-----eEE-Eeec-CCCCCcEEEECCCeeEEEEcc
Q 021648          249 ------DGSVYAWSVRSG--K-----EVA-SWMS-FDTEPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       249 ------Dg~i~vwd~~~~--~-----~~~-~~~~-~~~~v~~l~~~p~~~~l~s~~  289 (309)
                            ...|.-|+....  +     .+. .+.. .......|+|.|||.+.++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                  235666665332  1     111 1221 112357799999998877644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.10  E-value=1.5  Score=44.69  Aligned_cols=193  Identities=16%  Similarity=0.264  Sum_probs=109.3

Q ss_pred             eCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC-CceEEEeeec
Q 021648           19 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYLRYFKGH   97 (309)
Q Consensus        19 ~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~-~~~~~~~~~h   97 (309)
                      .+|..+.+|-=+ .+++.|+|+++...++...-.. .|.--.|.. ++.+....    +..|.-|++.. ..+++.|..|
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis-~~~l~lVT----~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS-LNTVALVT----DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecC-CCeeEEEc----CCeEEEeccCCCCccHHHHhcc
Confidence            467777776664 7899999998877666555433 233333433 33343333    45799999974 4566666666


Q ss_pred             c----cCEEEEEecCCCCeEEEec-------CCCcEEEeeCCCceeeeeeeecCcee----EEE---CCCCcEEEEEE--
Q 021648           98 H----DRVVSLSLCSSKDCFISGS-------LDRTVLLWDQRAEKCQGLLRVQGRPA----AAY---DDQGLVFAVAF--  157 (309)
Q Consensus        98 ~----~~v~~v~~~~~~~~l~s~s-------~Dg~v~~Wd~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~--  157 (309)
                      .    ..|..-..+++.++++-.|       -.|.+.+++.+.+... .+  .++..    ...   ..+..+++-+.  
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~i--egha~~F~~~~~~~~~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PI--EGHAASFAQFKMEGNAEESTLFCFAVRG  222 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-hh--hHhHhhhheeccCCCCCCceEEEEEEec
Confidence            3    3455556677888765332       3467778876543221 11  11110    000   12233555332  


Q ss_pred             --CCEEEEEECCCC--CcCCceEEEeCC------CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEe
Q 021648          158 --GGYIRMFDARKY--EKGPFDIFSVGG------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  221 (309)
Q Consensus       158 --~~~i~~~d~~~~--~~~~~~~~~~~~------~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~  221 (309)
                        ++.+++.++...  ..+++.......      ...=..++..|+.-..+..-+.-|.++++|+.++..+..-
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence              478999988543  112221111100      0011134566777777777888899999999999887543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.95  E-value=1.8  Score=38.25  Aligned_cols=120  Identities=8%  Similarity=0.065  Sum_probs=72.2

Q ss_pred             CceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEEE
Q 021648           77 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAV  155 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  155 (309)
                      ..++-+-|+.++..+..-   .-..-+.-.+|..+.++--. ..++.++|+++........+... ..+..- +...++.
T Consensus        47 ~~~vvIiDl~~~~~~~rr---pi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWi-s~~~l~l  121 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNTVAL  121 (494)
T ss_dssp             CCEEEEEETTSTTSCEEE---ECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEE-ETTEEEE
T ss_pred             CCeEEEEECCCCCcceec---ccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEec-CCCeEEE
Confidence            457888898876543211   11112445678877766555 78999999998877666555432 222222 2346666


Q ss_pred             EECCEEEEEECCCCCcCCceEEEeCCCC--CCCeEEEEccCCCEEEEEe
Q 021648          156 AFGGYIRMFDARKYEKGPFDIFSVGGDI--SDANVVKFSNDGRLMLLTT  202 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~v~~s~dg~~l~~~~  202 (309)
                      ..+..|+.|++.. +..+.+++..+...  .++.....++++++++..|
T Consensus       122 VT~taVyHWsi~~-~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~G  169 (494)
T 1bpo_A          122 VTDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG  169 (494)
T ss_dssp             ECSSEEEEEESSS-SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEE
T ss_pred             EcCCeeEEecccC-CCCchhheecchhcccceEEEEEECCCCCeEEEEe
Confidence            7788999999865 33455566544333  2444455677777765433

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.86  E-value=1.9  Score=38.10  Aligned_cols=229  Identities=15%  Similarity=0.259  Sum_probs=133.3

Q ss_pred             EeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC-CceEEEeee
Q 021648           18 DFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYLRYFKG   96 (309)
Q Consensus        18 ~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~-~~~~~~~~~   96 (309)
                      -.+|..+.+|-=+ .+++.|+|+++.+.++...-.+ .|.--.|-.+ +.+....    +..|.-|+++. ..+++.|..
T Consensus        72 IMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT----~taVyHWsi~~~s~P~kvFdR  144 (494)
T 1bpo_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT----DNAVYHWSMEGESQPVKMFDR  144 (494)
T ss_dssp             EECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC----SSEEEEEESSSSCCCEEEEEC
T ss_pred             eeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc----CCeeEEecccCCCCchhheec
Confidence            3578788877765 7899999999888777665543 2434444333 3444433    56899999975 467888887


Q ss_pred             ccc----CEEEEEecCCCCeEEEec-------CCCcEEEeeCCCceeeeeeeecCceeE--EE--C---CCCcEEEEEE-
Q 021648           97 HHD----RVVSLSLCSSKDCFISGS-------LDRTVLLWDQRAEKCQGLLRVQGRPAA--AY--D---DQGLVFAVAF-  157 (309)
Q Consensus        97 h~~----~v~~v~~~~~~~~l~s~s-------~Dg~v~~Wd~~~~~~~~~~~~~~~~~~--~~--~---~~~~~~~~~~-  157 (309)
                      |..    .|..-..+++.++++-.+       -.|.+.++..+.+... .+  .++...  .+  +   .+..+++-+. 
T Consensus       145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~i--eGhaa~F~~~~~~g~~~~~~lf~fa~r  221 (494)
T 1bpo_A          145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PI--EGHAASFAQFKMEGNAEESTLFCFAVR  221 (494)
T ss_dssp             CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EE--CCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred             chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-hh--eeeeeeeEEEecCCCCCCceEEEEEEe
Confidence            754    355566678888765332       2466778876544322 11  122111  11  1   1123555443 


Q ss_pred             ---CCEEEEEECCCC--CcCCceEEEeCC--C----CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC
Q 021648          158 ---GGYIRMFDARKY--EKGPFDIFSVGG--D----ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  226 (309)
Q Consensus       158 ---~~~i~~~d~~~~--~~~~~~~~~~~~--~----~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  226 (309)
                         ++++++.++...  ..+++.......  .    ..=..++.+|+.-..+..-+.-|.++++|+.++.++.....   
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI---  298 (494)
T 1bpo_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---  298 (494)
T ss_dssp             STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC---
T ss_pred             cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc---
Confidence               378999998543  122232211110  0    11123566788778888888999999999999999876553   


Q ss_pred             CCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          227 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       227 ~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      ....+...+.+.+..=++.....|.|.--.+..
T Consensus       299 s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             cCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            233444344444444444444556555444443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.76  E-value=0.5  Score=37.68  Aligned_cols=99  Identities=13%  Similarity=0.098  Sum_probs=62.5

Q ss_pred             CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeE------eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEEC
Q 021648          184 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL------LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  257 (309)
Q Consensus       184 ~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~  257 (309)
                      .....++|+|+|.+.+.  .+|.++-.+..++..      -..+..  ...+....+.|.|+|.+.++  .||.|+-++-
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~--~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGN--GGWNQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEEC--SCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecc--cccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            35678999999998888  778877777644111      011100  01111356889999999888  5699988887


Q ss_pred             CCCceE-----EEeecC-C-CCCcEEEECCCeeEEEEc
Q 021648          258 RSGKEV-----ASWMSF-D-TEPPVIKWTPGSLMFVTG  288 (309)
Q Consensus       258 ~~~~~~-----~~~~~~-~-~~v~~l~~~p~~~~l~s~  288 (309)
                      .+...-     .+..+- . ..+..|.|.|+|.+.+..
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            542210     111111 0 256889999999988777

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.69  E-value=1.8  Score=36.79  Aligned_cols=72  Identities=11%  Similarity=0.059  Sum_probs=38.7

Q ss_pred             EccCCCEEEEEeCC----------------------CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcC
Q 021648          191 FSNDGRLMLLTTME----------------------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG  248 (309)
Q Consensus       191 ~s~dg~~l~~~~~d----------------------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~  248 (309)
                      ...++++++.|+.+                      ..+.+||+.+.+-...-.. +....  ...+...+++.++.||.
T Consensus       249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~--~~~~~~~~~~i~v~GG~  325 (357)
T 2uvk_A          249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL-SQGRA--YGVSLPWNNSLLIIGGE  325 (357)
T ss_dssp             EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC-SSCCB--SSEEEEETTEEEEEEEE
T ss_pred             EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC-CCCcc--cceeEEeCCEEEEEeee
Confidence            34467888887742                      2467889876543322111 11111  12233357888888886


Q ss_pred             CC------cEEEEECCCCceEEE
Q 021648          249 DG------SVYAWSVRSGKEVAS  265 (309)
Q Consensus       249 Dg------~i~vwd~~~~~~~~~  265 (309)
                      ++      .+.++++++++.+..
T Consensus       326 ~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          326 TAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             CCCCCEeeeEEEEEEcCcEeEee
Confidence            53      456668887776554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.47  E-value=1.7  Score=35.81  Aligned_cols=172  Identities=15%  Similarity=0.170  Sum_probs=84.7

Q ss_pred             CCCeEEEecCCC-----cEEEeeCCCceeeeeeeecC---ceeEEECCCCcEEEEEEC-----CEEEEEECCCCCcCCce
Q 021648          109 SKDCFISGSLDR-----TVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVAFG-----GYIRMFDARKYEKGPFD  175 (309)
Q Consensus       109 ~~~~l~s~s~Dg-----~v~~Wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~~  175 (309)
                      +++.++.|+.++     .+.++|+.+.+....-.++.   ....+......++.++.+     ..+.+||+.+.+   ..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~---W~  137 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE---WF  137 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE---EE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe---Ee
Confidence            567777877553     57888988776443322221   112222233344444544     356777765421   11


Q ss_pred             EE-EeCCCCCCCeEEEEccCCCEEEEEeCC-------CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEc
Q 021648          176 IF-SVGGDISDANVVKFSNDGRLMLLTTME-------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  247 (309)
Q Consensus       176 ~~-~~~~~~~~~~~v~~s~dg~~l~~~~~d-------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s  247 (309)
                      .. ..........++  .-++++++.|+.+       ..+.+||+.+.+-...-.. +...... .++ .-+++.++.|+
T Consensus       138 ~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~-~~~-~~~~~iyv~GG  212 (302)
T 2xn4_A          138 HVAPMNTRRSSVGVG--VVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM-STRRSGA-GVG-VLNNLLYAVGG  212 (302)
T ss_dssp             EECCCSSCCBSCEEE--EETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCC-SSCCBSC-EEE-EETTEEEEECC
T ss_pred             ecCCCCCcccCceEE--EECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCC-ccccccc-cEE-EECCEEEEECC
Confidence            11 000111111222  2367888877653       3588899877654432111 1111111 122 23678888887


Q ss_pred             CCC-----cEEEEECCCCce--EEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648          248 GDG-----SVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       248 ~Dg-----~i~vwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      .++     .+.+||..+.+-  +..++. ...-..++ .-++++++.|+.
T Consensus       213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~-~~~~~i~v~GG~  260 (302)
T 2xn4_A          213 HDGPLVRKSVEVYDPTTNAWRQVADMNM-CRRNAGVC-AVNGLLYVVGGD  260 (302)
T ss_dssp             BSSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCB
T ss_pred             CCCCcccceEEEEeCCCCCEeeCCCCCC-ccccCeEE-EECCEEEEECCc
Confidence            653     689999987543  222211 11111222 236777777774

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.44  E-value=1.8  Score=35.97  Aligned_cols=226  Identities=13%  Similarity=0.138  Sum_probs=105.1

Q ss_pred             EEEEeeCCCcEEEEEcCCCceee-eeeccccceeEEEEecCCCEEEEEcC----CCC----CceeEEEEccCCceEEEee
Q 021648           25 YLVTASDDESIRLYDVTAATCLK-TINSKKYGVDLVCFTSHPTTVIYSSK----NGW----DESLRLLSLHDNKYLRYFK   95 (309)
Q Consensus        25 ~l~t~s~D~~v~iWd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~----~g~----d~~i~~~d~~~~~~~~~~~   95 (309)
                      +++.|+  ..+-+||..+++=.. .+..........+...++..++.+..    .+.    ...+..||..+++-.. +.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CC
Confidence            445555  578899988766322 11111111222233345554444431    111    1236778887765221 11


Q ss_pred             ecccC-E-EEEEecCCCCeEEEecCC--------CcEEEeeCCCceeeeeeeecC---ceeEEECCCCcEEEEEE-C---
Q 021648           96 GHHDR-V-VSLSLCSSKDCFISGSLD--------RTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVAF-G---  158 (309)
Q Consensus        96 ~h~~~-v-~~v~~~~~~~~l~s~s~D--------g~v~~Wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~---  158 (309)
                      .-..+ - .++.. -+++.++.|+.+        ..+.++|+.+.+....-.++.   ....+......++.++. +   
T Consensus        84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  162 (315)
T 4asc_A           84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRK  162 (315)
T ss_dssp             CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSC
T ss_pred             CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCc
Confidence            11100 0 01111 256677777743        468888988775443222211   11222222223333333 1   


Q ss_pred             --CEEEEEECCCCCcCCceEE-EeCCCCCCCeEEEEccCCCEEEEEeCCC-----cEEEEECCCCeEeEEeeecCCCCCc
Q 021648          159 --GYIRMFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVKPVSRNS  230 (309)
Q Consensus       159 --~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~v~~s~dg~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~  230 (309)
                        +.+..||+.+.+   .... ..........++  .-++++++.|+.++     .+.+||+.+.+-...-. .+.....
T Consensus       163 ~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~  236 (315)
T 4asc_A          163 CLNKMCVYDPKKFE---WKELAPMQTARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA-FPQERSS  236 (315)
T ss_dssp             BCCCEEEEETTTTE---EEECCCCSSCCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC-CSSCCBS
T ss_pred             ccceEEEEeCCCCe---EEECCCCCCchhceEEE--EECCEEEEEeccCCCCccceEEEEECCCCeEEECCC-CCCcccc
Confidence              467888865421   0000 000011111222  23778888887654     47889988765443211 1111111


Q ss_pred             cceEEECCCCCEEEEEcCCC--------------cEEEEECCCCce
Q 021648          231 TLEASFSPEGMFVISGSGDG--------------SVYAWSVRSGKE  262 (309)
Q Consensus       231 ~~~~~~sp~g~~l~s~s~Dg--------------~i~vwd~~~~~~  262 (309)
                      . .+ ..-+++.++.|+.++              .+.+||+.+.+-
T Consensus       237 ~-~~-~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  280 (315)
T 4asc_A          237 L-SL-VSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW  280 (315)
T ss_dssp             C-EE-EEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred             e-eE-EEECCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence            1 12 223677888887642              477889877543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.38  E-value=3.5  Score=38.90  Aligned_cols=112  Identities=9%  Similarity=0.072  Sum_probs=53.8

Q ss_pred             CCCCEEEEeeCC----CcEEEEEcCCCceeeee-e-----ccccc-eeEEEEec-CCCEEEEEcCCCC---CceeEEEEc
Q 021648           21 KSSSYLVTASDD----ESIRLYDVTAATCLKTI-N-----SKKYG-VDLVCFTS-HPTTVIYSSKNGW---DESLRLLSL   85 (309)
Q Consensus        21 ~~~~~l~t~s~D----~~v~iWd~~~~~~~~~~-~-----~~~~~-v~~~~~~~-~~~~~~~~s~~g~---d~~i~~~d~   85 (309)
                      .++.+++.||.+    ..+-+||..+++-...- .     ..... -..++... ++..++.+..++.   -..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456778888864    36778888766432211 1     00001 11223322 4444444432221   245778888


Q ss_pred             cCCceEEEeeecccCE-EEEEecCCCCeEEEecCCC--cEEEeeCCCcee
Q 021648           86 HDNKYLRYFKGHHDRV-VSLSLCSSKDCFISGSLDR--TVLLWDQRAEKC  132 (309)
Q Consensus        86 ~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~s~Dg--~v~~Wd~~~~~~  132 (309)
                      .+++=...-.-...+. .+++...+++.++.|+.++  .+.+||+.+...
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W  525 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF  525 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce
Confidence            7754221110011111 1222223677777777655  577777766543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.78  E-value=2.5  Score=34.96  Aligned_cols=202  Identities=11%  Similarity=0.072  Sum_probs=96.6

Q ss_pred             CceeEEEEccCCceEEE--eeecccCEEEEEecCCCCeEEEecCC----CcEEEeeCCCceeeeeeeecC---ceeEEEC
Q 021648           77 DESLRLLSLHDNKYLRY--FKGHHDRVVSLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLLRVQG---RPAAAYD  147 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~--~~~h~~~v~~v~~~~~~~~l~s~s~D----g~v~~Wd~~~~~~~~~~~~~~---~~~~~~~  147 (309)
                      ...+..||..+++-...  +......-..+.  -+++.++.|+.+    ..+.++|+.+++....-.++.   ....+..
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  100 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA  100 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE
T ss_pred             CceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE
Confidence            45688888877652211  111111111111  356677888765    677888988776543322211   1112222


Q ss_pred             CCCcEEEEEEC------CEEEEEECCCCCcCCceEE-EeCCCCCCCeEEEEccCCCEEEEEeC---------CCcEEEEE
Q 021648          148 DQGLVFAVAFG------GYIRMFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTTM---------EGHIHVLD  211 (309)
Q Consensus       148 ~~~~~~~~~~~------~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~v~~s~dg~~l~~~~~---------dg~v~i~d  211 (309)
                      ....++.++.+      ..+.+||+...+   .... ..........+  ..-++++++.|+.         -..+.+||
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd  175 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTES---WHTKPSMLTQRCSHGM--VEANGLIYVCGGSLGNNVSGRVLNSCEVYD  175 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTE---EEEECCCSSCCBSCEE--EEETTEEEEECCEESCTTTCEECCCEEEEE
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCc---eEeCCCCcCCcceeEE--EEECCEEEEECCCCCCCCcccccceEEEeC
Confidence            22233333333      357777765421   1111 00001111122  2237788887764         34588899


Q ss_pred             CCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC-----CcEEEEECCCCce--EEEeecCCCCCcEEEECCCeeE
Q 021648          212 SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----GSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLM  284 (309)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D-----g~i~vwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~  284 (309)
                      +.+.+-...-. .+..... ..+.. -+++.++.|+.+     ..+.+||..+.+-  +..++.......++.+  ++++
T Consensus       176 ~~~~~W~~~~~-~p~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i  250 (306)
T 3ii7_A          176 PATETWTELCP-MIEARKN-HGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIV  250 (306)
T ss_dssp             TTTTEEEEECC-CSSCCBS-CEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEE
T ss_pred             CCCCeEEECCC-ccchhhc-ceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEE
Confidence            88765433211 1111111 11222 267788888764     3689999987543  2222211112222333  6777


Q ss_pred             EEEccc
Q 021648          285 FVTGSS  290 (309)
Q Consensus       285 l~s~~~  290 (309)
                      ++.|+.
T Consensus       251 ~v~GG~  256 (306)
T 3ii7_A          251 YVLAGF  256 (306)
T ss_dssp             EEEECB
T ss_pred             EEEeCc
Confidence            777773

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.60  E-value=2.7  Score=34.85  Aligned_cols=172  Identities=10%  Similarity=0.046  Sum_probs=83.1

Q ss_pred             CCCeEEEecC----C-----CcEEEeeCCCceeeeeeeecC---ceeEEECCCCcEEE-EEEC-----CEEEEEECCCCC
Q 021648          109 SKDCFISGSL----D-----RTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFA-VAFG-----GYIRMFDARKYE  170 (309)
Q Consensus       109 ~~~~l~s~s~----D-----g~v~~Wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~-----~~i~~~d~~~~~  170 (309)
                      +++.++.|+.    +     ..+.++|+.+.+....-.++.   ....+.. ++.++. ++.+     ..+..||+.+.+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~  148 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDE  148 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence            5667777775    2     467788887776443322211   1112222 233333 3322     457778765421


Q ss_pred             cCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC-----CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEE
Q 021648          171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  245 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s  245 (309)
                      =...  ..+........++.+  ++++++.|+.+     ..+.+||+.+.+-...-. .+........+.+  +++.++.
T Consensus       149 W~~~--~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~iyv~  221 (308)
T 1zgk_A          149 WHLV--APMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA-MNTIRSGAGVCVL--HNCIYAA  221 (308)
T ss_dssp             EEEC--CCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEE--TTEEEEE
T ss_pred             EeEC--CCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC-CCCccccceEEEE--CCEEEEE
Confidence            0000  000001111222222  77888888765     458889987765432211 1111111112222  7778888


Q ss_pred             EcCC-----CcEEEEECCCCceEE--EeecCCCCCcEEEECCCeeEEEEccc
Q 021648          246 GSGD-----GSVYAWSVRSGKEVA--SWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       246 ~s~D-----g~i~vwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                      |+.+     ..+.+||+.+.+-..  .++. ...-.+++. -++++++.|+.
T Consensus       222 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~  271 (308)
T 1zgk_A          222 GGYDGQDQLNSVERYDVETETWTFVAPMKH-RRSALGITV-HQGRIYVLGGY  271 (308)
T ss_dssp             CCBCSSSBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE-ETTEEEEECCB
T ss_pred             eCCCCCCccceEEEEeCCCCcEEECCCCCC-CccceEEEE-ECCEEEEEcCc
Confidence            8765     469999998754322  2211 111112222 26677777764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.49  E-value=0.56  Score=40.07  Aligned_cols=181  Identities=10%  Similarity=0.112  Sum_probs=90.6

Q ss_pred             CceeEEEEccCCceEEEeeec-ccCEEEEEec--C-CCCeEEEe-cCCCcEEEeeCCCceeeeeeeecCc----eeEE--
Q 021648           77 DESLRLLSLHDNKYLRYFKGH-HDRVVSLSLC--S-SKDCFISG-SLDRTVLLWDQRAEKCQGLLRVQGR----PAAA--  145 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h-~~~v~~v~~~--~-~~~~l~s~-s~Dg~v~~Wd~~~~~~~~~~~~~~~----~~~~--  145 (309)
                      |+.+..+|.++|+.++.++.- ..++....-.  + ++..++.. ..||.+..+|.+++.....+..+..    +...  
T Consensus        19 dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~   98 (339)
T 2be1_A           19 EGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKT   98 (339)
T ss_dssp             TSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEEC
T ss_pred             CCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCC
Confidence            788999999999998888654 1232221100  1 22333333 6799999999887754433322210    1110  


Q ss_pred             ---E------CCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCC--CC-----CCeEEE---Ec--cCCCEEEEEeCC
Q 021648          146 ---Y------DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD--IS-----DANVVK---FS--NDGRLMLLTTME  204 (309)
Q Consensus       146 ---~------~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--~~-----~~~~v~---~s--~dg~~l~~~~~d  204 (309)
                         .      ..++.+++++.++.+...|+++.+.    +......  ..     ...+-.   +.  -.+..+..+..+
T Consensus        99 ~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~----~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~  174 (339)
T 2be1_A           99 NIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI----ISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTI  174 (339)
T ss_dssp             C----------CCEEEEECEEEEEEEEEETTTCCE----EEEESTTCBCC--------------------CCEEEEEEEE
T ss_pred             CceeecccccccCCEEEEEecCCEEEEEECCCCcE----EEEEecCCCcccccccccccccccccccccCCCeEEEecce
Confidence               1      1456778888889999988876542    2222111  00     000111   10  113445555555


Q ss_pred             CcEEEEECCCCeEe----EEeeecCCCCCccc-eEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 021648          205 GHIHVLDSFRGTLL----STYNVKPVSRNSTL-EASFSPEGMFVISGSGDGSVYAWSVRSGKEVA  264 (309)
Q Consensus       205 g~v~i~d~~~~~~~----~~~~~~~~~~~~~~-~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~  264 (309)
                      ..+.+.+ .+|+.-    ..+.... ....+. .-.++.|++++ .++.||.|...|..+++.+-
T Consensus       175 y~v~~~~-~sG~~W~~~~s~~~~~~-~~~~~~~~~~~s~Dg~~~-~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          175 FELGIHS-YDGASYNVTYSTWQQNV-LDVPLALQNTFSKDGMCI-APFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EECEECC-TTSCCCCCEEEEEECCT-TTHHHHTTCSSCSSSCCE-EEETTTEEEEECSTTCCEEE
T ss_pred             EEEEEEC-CCCCeEEEecccccccc-cccccccccccccCCcEE-EECCCCEEEEEECCCCcEEE
Confidence            5665554 333210    0010000 000000 00112456774 47889999999998887654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.30  E-value=7.5  Score=39.06  Aligned_cols=248  Identities=11%  Similarity=0.095  Sum_probs=125.5

Q ss_pred             CcEEEEEcCCCceeeeeeccc-cceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEE-eeecccCEEEEEecCC-
Q 021648           33 ESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY-FKGHHDRVVSLSLCSS-  109 (309)
Q Consensus        33 ~~v~iWd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~-~~~h~~~v~~v~~~~~-  109 (309)
                      +.||+.+...+..+..+.... ..+..++.  ++.+++.++    .+.+.++.+..++.... -..-.+.|.++++.|. 
T Consensus       492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~--n~~~vvva~----g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~  565 (1158)
T 3ei3_A          492 ASVRLVSQEPKALVSEWKEPQAKNISVASC--NSSQVVVAV----GRALYYLQIHPQELRQISHTEMEHEVACLDITPLG  565 (1158)
T ss_dssp             SCEEEEESSSCCEEEEECCTTCCCCCEEEE--CSSEEEEEE----TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCS
T ss_pred             CEEEEEECCCCeEEEEEECCCCCEEEEEEe--CCCEEEEEE----CCEEEEEEeeCCceeeecccCCCCceEEEEeecCC
Confidence            456667665555555555332 23444443  344666664    24677777766542211 1223568999998753 


Q ss_pred             -----CCeEEEecC-CCcEEEeeCCCceeeeeeeecC--ce--e-EEECCCCcEEEEE-ECCEEEEEECCC--CCcCCce
Q 021648          110 -----KDCFISGSL-DRTVLLWDQRAEKCQGLLRVQG--RP--A-AAYDDQGLVFAVA-FGGYIRMFDARK--YEKGPFD  175 (309)
Q Consensus       110 -----~~~l~s~s~-Dg~v~~Wd~~~~~~~~~~~~~~--~~--~-~~~~~~~~~~~~~-~~~~i~~~d~~~--~~~~~~~  175 (309)
                           +++++.|.+ |+++++.++.+-+......+..  .+  . ........++.++ .+|.+..+.+..  .......
T Consensus       566 ~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r  645 (1158)
T 3ei3_A          566 DSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRK  645 (1158)
T ss_dssp             SSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEE
T ss_pred             CCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccce
Confidence                 358888987 9999999987654443333221  11  1 1111222333344 466665554332  1111111


Q ss_pred             EEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCcc-ceEEECCCC--CEEEEEcCCCcE
Q 021648          176 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST-LEASFSPEG--MFVISGSGDGSV  252 (309)
Q Consensus       176 ~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~sp~g--~~l~s~s~Dg~i  252 (309)
                      ...++.  .++.-..+...|..-+.+..+...-++-.. +.....    +.....+ ..+.|+...  .-++.. .++.+
T Consensus       646 ~~~LG~--~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s----~l~~~~v~~~~~F~se~~~~g~v~~-~~~~L  717 (1158)
T 3ei3_A          646 KVTLGT--QPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS----NVNLKEVNYMCPLNSDGYPDSLALA-NNSTL  717 (1158)
T ss_dssp             EEECCS--SCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE----EBSSSCCCEEEEECCSSSTTEEEEE-CSSCE
T ss_pred             eEEcCC--CceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe----ccChHHhceEeccCcccCCCcEEEE-cCCce
Confidence            122221  244444455445444444445544444332 222211    1111122 234565421  334433 34569


Q ss_pred             EEEECCCCce--EEEeecCCCCCcEEEECCCeeEEEEccceEEEe
Q 021648          253 YAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSSELSFW  295 (309)
Q Consensus       253 ~vwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~  295 (309)
                      +|..+.+-+.  +.++ .....+..++++|..+.++.+..+...+
T Consensus       718 rI~~i~~~~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~~  761 (1158)
T 3ei3_A          718 TIGTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQ  761 (1158)
T ss_dssp             EEEEECCSSSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEEE
T ss_pred             EEEEecccCCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEecccc
Confidence            9998865332  3333 3456788999999988877766654443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.53  E-value=9.5  Score=36.11  Aligned_cols=269  Identities=12%  Similarity=0.060  Sum_probs=137.0

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeee-eecc----ccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc
Q 021648           12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-INSK----KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   86 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~-~~~~----~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~   86 (309)
                      ..|.++..+++|.+.+.. . +-+..+|..+++.... ....    ...|..+....++..+..+.    ++-+..+|..
T Consensus       146 ~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt----~~Gl~~~~~~  219 (758)
T 3ott_A          146 NTIYSIIRTKDNQIYVGT-Y-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT----EGYLFQYFPS  219 (758)
T ss_dssp             SCEEEEEECTTCCEEEEE-T-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE----EEEEEEEETT
T ss_pred             CeEEEEEEcCCCCEEEEe-C-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE----CCCCeEEcCC
Confidence            458888888888776533 3 4577788766543211 1111    11255555555555454444    2347788877


Q ss_pred             CCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee-------c--CceeEEECCCCcEEEEEE
Q 021648           87 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-------Q--GRPAAAYDDQGLVFAVAF  157 (309)
Q Consensus        87 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~  157 (309)
                      +++......-....|.++...++++.. .|..+ -+.++|..+.+.......       .  .......+..+.+..+..
T Consensus       220 ~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~  297 (758)
T 3ott_A          220 TGQIKQTEAFHNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTD  297 (758)
T ss_dssp             TTEEEEEEEEEEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEES
T ss_pred             CCeEEeccCCCCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeC
Confidence            765332212223457887776666544 34444 567788765543221110       1  112233455666666665


Q ss_pred             CCEEEEEECCCCCcCCceEEEeC-----CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe--EeEEeee----cCC
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVG-----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT--LLSTYNV----KPV  226 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~--~~~~~~~----~~~  226 (309)
                      .| +.++...    ..+..+...     .....+.++...++|.+.+.. .+| +..++..++.  ....+..    ...
T Consensus       298 ~G-l~~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l  370 (758)
T 3ott_A          298 YG-ISLSRYN----SALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-ANG-LIRFTDPAGERHDAIWYRMGDKTYPL  370 (758)
T ss_dssp             SS-EEEECCC----C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-TTE-EEEESCTTSSCCCCEEECTTCSSSCC
T ss_pred             Cc-ccccccC----CceeEEecccCCCCCCCceEEEEEEcCCCCEEEee-CCc-ceeecccccccceeEEeccCCcCCCC
Confidence            55 4444221    122222111     112346777788888876554 454 5566655431  1112211    111


Q ss_pred             CCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee-c-----CCCCCcEEEECCCeeEEEEc-cceEEEeee
Q 021648          227 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM-S-----FDTEPPVIKWTPGSLMFVTG-SSELSFWIP  297 (309)
Q Consensus       227 ~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~-~-----~~~~v~~l~~~p~~~~l~s~-~~d~~~~~~  297 (309)
                      ....|.++.-.++|+..+. + ++-+..+|..+++...-.. .     ....|.++...+++++.+.. +..+..+.+
T Consensus       371 ~~~~v~~i~~d~~g~lWig-t-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~  446 (758)
T 3ott_A          371 SHNRIRHIYEDKEQQLWIA-T-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDK  446 (758)
T ss_dssp             SCSCEEEEEECTTSCEEEE-E-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEH
T ss_pred             CCCceEEEEECCCCCEEEE-e-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEcc
Confidence            2344666767777776553 3 4569999998765432111 1     11235667777777654433 334554443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.08  E-value=15  Score=37.66  Aligned_cols=216  Identities=12%  Similarity=0.243  Sum_probs=106.2

Q ss_pred             CCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCC
Q 021648           32 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD  111 (309)
Q Consensus        32 D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~  111 (309)
                      ..+|-|-|+..+.....   .+.....+-.+|..+-++.-+    ..++.++|+++.+.++.+.-... |.-=.|-.+..
T Consensus        47 ~~~vvIidl~~~~~~~r---rpi~AdsAIMnP~~~iiALra----g~~lQiFnl~~k~klks~~~~e~-VvfWkWis~~~  118 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIR---RPISADSAIMNPASKVIALKA----GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNT  118 (1630)
T ss_pred             CceEEEEECCCCCCccc---ccccchhhccCCCcceEEEec----CCeEEEeehHHhhhhcccccCCC-ceEEEecCCCe
Confidence            34677777765443211   011112233445554444332    46899999998887777665444 43334543322


Q ss_pred             -eEEEecCCCcEEEeeCCC-ceeeeeeeec----CceeEEE--CCCCcEEE-EEE-------CCEEEEEECCCCCcCCc-
Q 021648          112 -CFISGSLDRTVLLWDQRA-EKCQGLLRVQ----GRPAAAY--DDQGLVFA-VAF-------GGYIRMFDARKYEKGPF-  174 (309)
Q Consensus       112 -~l~s~s~Dg~v~~Wd~~~-~~~~~~~~~~----~~~~~~~--~~~~~~~~-~~~-------~~~i~~~d~~~~~~~~~-  174 (309)
                       -|+|   +..|.-|++.. ..+...+..+    +.-...|  +++...+. +|.       .|.+.+|.........+ 
T Consensus       119 l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ie  195 (1630)
T 1xi4_A          119 VALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  195 (1630)
T ss_pred             eEEEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhh
Confidence             3444   67899999863 2232222111    1111112  23333222 222       37888888765332211 


Q ss_pred             ------eEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC---eEe---EEee--ecCC-CCCccceEEECCC
Q 021648          175 ------DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG---TLL---STYN--VKPV-SRNSTLEASFSPE  239 (309)
Q Consensus       175 ------~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~---~~~---~~~~--~~~~-~~~~~~~~~~sp~  239 (309)
                            ..+.+.+...+...++|.....      ..++++|.++...   ...   ....  ..+. ...-...+..|+.
T Consensus       196 gha~~F~~~~~~~~~~~~~l~~f~~~~~------~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k  269 (1630)
T 1xi4_A          196 GHAASFAQFKMEGNAEESTLFCFAVRGQ------AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK  269 (1630)
T ss_pred             HhHhhhheeccCCCCCCceEEEEEEecC------CCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc
Confidence                  1122222222222333322111      1268888887432   110   0000  1110 1112345667777


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEE
Q 021648          240 GMFVISGSGDGSVYAWSVRSGKEVA  264 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~~~~~~~  264 (309)
                      -..+...+.-|.|+++|+.|+..+-
T Consensus       270 ~g~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          270 HDVVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             cCEEEEEecCceEEEEecccchhhh
Confidence            7788888899999999999987653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=90.45  E-value=5.7  Score=31.65  Aligned_cols=174  Identities=10%  Similarity=0.063  Sum_probs=85.6

Q ss_pred             CCEEEEeeCCCcEEEEEcCCCc------eeeeeec-cccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEee
Q 021648           23 SSYLVTASDDESIRLYDVTAAT------CLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK   95 (309)
Q Consensus        23 ~~~l~t~s~D~~v~iWd~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~   95 (309)
                      ..+|.....| +++.=...++.      ....+.. .=..+..++|+|++...++ +    ++.+.-.+..+.+...-+.
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~----~G~Ly~~~~~t~~~~~W~~   77 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-L----NDKIYKGTPPTHDNDNWMG   77 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-E----TTEEEEESCCCSTTCCHHH
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-e----CCeEEEECCCCCCcccccc
Confidence            4567777777 54443333322      1112211 0124678999997774333 3    4455555553322111111


Q ss_pred             ecccC--------EEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeee----ee-----cCceeEEECCCCcEEEEEEC
Q 021648           96 GHHDR--------VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RV-----QGRPAAAYDDQGLVFAVAFG  158 (309)
Q Consensus        96 ~h~~~--------v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~  158 (309)
                       -...        -.++-|.|+|.+-++  .||.|.-|+.-+.....-+    .+     .....+.+.+++.+.++. +
T Consensus        78 -s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-d  153 (236)
T 1tl2_A           78 -RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-G  153 (236)
T ss_dssp             -HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-T
T ss_pred             -cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-C
Confidence             1122        367888899986666  5799988875322111110    00     123456778999999999 8


Q ss_pred             CEEEEEECCCCCcCC-c-eEEEeC-CCCCCCeEEEEccCCCEEEEEeCCCcEE
Q 021648          159 GYIRMFDARKYEKGP-F-DIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIH  208 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~-~-~~~~~~-~~~~~~~~v~~s~dg~~l~~~~~dg~v~  208 (309)
                      +.+.-.-........ + ....+. ..-.....+.|+|+|.+.+..  ++.++
T Consensus       154 g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          154 QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence            875432211100000 0 000111 111122345588888777666  66554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.08  E-value=8.2  Score=32.92  Aligned_cols=230  Identities=10%  Similarity=0.086  Sum_probs=115.1

Q ss_pred             cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee--eee----eccccceeEEEEecC---CCEEEEEcCCCCCceeEE
Q 021648           12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KTI----NSKKYGVDLVCFTSH---PTTVIYSSKNGWDESLRL   82 (309)
Q Consensus        12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~--~~~----~~~~~~v~~~~~~~~---~~~~~~~s~~g~d~~i~~   82 (309)
                      ..-..|+|.|||+++++--..+.|++++..+++..  ..+    .........++++|+   ...++++.....+..|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            45678999999998887765899999987655432  111    122345678899885   344443211111345555


Q ss_pred             EEccCC--------ceEEEee------ecccCEEEEEecCCCCeEEEecC-------------CCcEEEeeCCCce----
Q 021648           83 LSLHDN--------KYLRYFK------GHHDRVVSLSLCSSKDCFISGSL-------------DRTVLLWDQRAEK----  131 (309)
Q Consensus        83 ~d~~~~--------~~~~~~~------~h~~~v~~v~~~~~~~~l~s~s~-------------Dg~v~~Wd~~~~~----  131 (309)
                      |.+..+        +....+.      .|  ....+.|.|||++.++.+.             -|.|.-.+....-    
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            555431        1111121      23  3457899999997777542             2444444543210    


Q ss_pred             e---eeeeeec--CceeEEECCCCcEEEEEEC----CEEEEEECC-CC-------C--cCC--ceEEEeCCCCCCCeEEE
Q 021648          132 C---QGLLRVQ--GRPAAAYDDQGLVFAVAFG----GYIRMFDAR-KY-------E--KGP--FDIFSVGGDISDANVVK  190 (309)
Q Consensus       132 ~---~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~i~~~d~~-~~-------~--~~~--~~~~~~~~~~~~~~~v~  190 (309)
                      +   ...+...  +-..+.+++.+.++++-.+    ..|.+...- ++       .  ...  ..++....+......++
T Consensus       190 Pf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~  269 (347)
T 3das_A          190 PFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIA  269 (347)
T ss_dssp             SSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEE
T ss_pred             CCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceE
Confidence            0   0111111  1224566676777665532    133333211 00       0  000  00111111111234555


Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCCeEe---EEeeecCCCCCccceEEECCCCCEEEEE
Q 021648          191 FSNDGRLMLLTTMEGHIHVLDSFRGTLL---STYNVKPVSRNSTLEASFSPEGMFVISG  246 (309)
Q Consensus       191 ~s~dg~~l~~~~~dg~v~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~sp~g~~l~s~  246 (309)
                      |. +|..+...-..+.|....+......   ..+.  .....++..++..|||..+++-
T Consensus       270 ~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l--~~~~gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          270 YA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFL--EGEYGRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             EE-TTEEEEEESTTCSEEEEEEETTEESSCCEEES--TTTSSCEEEEEEEETTEEEEEE
T ss_pred             EE-cCceeeccccCCEEEEEEecCCceecceEEee--cCCCCCccEEEECCCCcEEEEE
Confidence            65 4666666666667766665443321   1111  1123466788888998766554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.65  E-value=2.4  Score=37.87  Aligned_cols=103  Identities=15%  Similarity=0.206  Sum_probs=56.8

Q ss_pred             CeEEEEccCCC-EEEEEeCCCcEEEEECCCCe---EeEEee--ecC----CCCCccceEEECCC----CCEEEEEcCC--
Q 021648          186 ANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGT---LLSTYN--VKP----VSRNSTLEASFSPE----GMFVISGSGD--  249 (309)
Q Consensus       186 ~~~v~~s~dg~-~l~~~~~dg~v~i~d~~~~~---~~~~~~--~~~----~~~~~~~~~~~sp~----g~~l~s~s~D--  249 (309)
                      ...++|.|||. .++.+...|.|++++.....   .+..+.  ...    ....-...++|+|+    +...++-+.+  
T Consensus        16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~   95 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE   95 (463)
T ss_dssp             EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred             ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence            46789999996 34445578999999753221   111111  000    01234567999996    4444443321  


Q ss_pred             ----------CcEEEEECCCC----------ceEEEee----cCCCCCcEEEECCCeeEEEEccc
Q 021648          250 ----------GSVYAWSVRSG----------KEVASWM----SFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       250 ----------g~i~vwd~~~~----------~~~~~~~----~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                                ..|.-|.+..+          +.+..+.    .|.  ...|+|.||+.+.++.+.
T Consensus        96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECC
T ss_pred             CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCC
Confidence                      13444666421          2222332    233  467999999988777553

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=89.60  E-value=14  Score=34.91  Aligned_cols=260  Identities=9%  Similarity=0.040  Sum_probs=130.6

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR   92 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~   92 (309)
                      .|.++..++++..|-.|. ++-+..+|..+++...........|..++...++..-+ +..    +-+.+++..+++...
T Consensus       192 ~i~~i~~d~~~~~lWigt-~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~----~Gl~~~~~~~~~~~~  265 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGT-EGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD----NGLYVYHNDTTPLQH  265 (758)
T ss_dssp             CEEEEEEETTTTEEEEEE-EEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET----TEEEEECCTTSCCEE
T ss_pred             eeEEEEEECCCCEEEEEE-CCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC----CceeEEecCCCcEEE
Confidence            478888887766433333 34577888776543221111223355555555554333 332    247778876654322


Q ss_pred             Eee-------ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee---------cCceeEEECCCCcEEEEE
Q 021648           93 YFK-------GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV---------QGRPAAAYDDQGLVFAVA  156 (309)
Q Consensus        93 ~~~-------~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  156 (309)
                      ...       -....|.++....+++ |..|...| +.+... ... ...+..         ........+.++.+..+.
T Consensus       266 ~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~-~~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt  341 (758)
T 3ott_A          266 IIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRY-NSA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG  341 (758)
T ss_dssp             ECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECC-CC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE
T ss_pred             EEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-cccccc-CCc-eeEEecccCCCCCCCceEEEEEEcCCCCEEEee
Confidence            211       0224588887766665 44455556 444432 111 111110         011223445566666665


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCC-----CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecC---CCC
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGG-----DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP---VSR  228 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---~~~  228 (309)
                       .+.+..++........+..+....     ....+.++...++|++.+. + ++-+..+|..++..........   ...
T Consensus       342 -~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig-t-~~GL~~~~~~~~~~~~~~~~~~~~~~~~  418 (758)
T 3ott_A          342 -ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIA-T-DGSINRYDYATRQFIHYNIVDNTGTYNT  418 (758)
T ss_dssp             -TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEE-E-TTEEEEEETTTTEEEEEEEECCC--CBS
T ss_pred             -CCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEE-e-CCcHhhcCcCCCcEEEeecCCCcCCCCC
Confidence             445666665432212222222110     1134677777888876554 4 4578889988776543211111   122


Q ss_pred             CccceEEECCCCCEEEEEcCCCcEEEEECCCC-----ceE---EEee---cCC-CCCcEEEECCCeeEEE
Q 021648          229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSG-----KEV---ASWM---SFD-TEPPVIKWTPGSLMFV  286 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~-----~~~---~~~~---~~~-~~v~~l~~~p~~~~l~  286 (309)
                      ..+.++...++|+.. .|+..+-+.++|..+.     +..   ..+.   +.+ ..|.++...+++++-+
T Consensus       419 ~~v~~i~~d~~g~lW-igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi  487 (758)
T 3ott_A          419 NWTYYIFEDTAGQLW-ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWV  487 (758)
T ss_dssp             SSEEEEEECTTSEEE-EEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEE
T ss_pred             ceEEEEEEcCCCCEE-EEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEE
Confidence            345566666676654 4665666899986431     111   1111   111 2367777778777665

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.58  E-value=1.7  Score=42.70  Aligned_cols=38  Identities=32%  Similarity=0.463  Sum_probs=32.9

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN   50 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~   50 (309)
                      .|.++...++..++.|-+.|+++|+|++.+++|+.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677778888899999999999999999999987643

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.92  E-value=1.3  Score=40.41  Aligned_cols=73  Identities=15%  Similarity=0.176  Sum_probs=48.7

Q ss_pred             eEEEEccCCCEEEEEe-CCCcEEEEECCCC------eEe---EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEE
Q 021648          187 NVVKFSNDGRLMLLTT-MEGHIHVLDSFRG------TLL---STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS  256 (309)
Q Consensus       187 ~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~------~~~---~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd  256 (309)
                      -.+.++|||++++.++ .+.+|.++|..+-      +.+   ..........-..+-.+|.++|.-..|--.|..|--|+
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence            3467899999987765 5889999997631      110   00001111122345689999996666667999999999


Q ss_pred             CCC
Q 021648          257 VRS  259 (309)
Q Consensus       257 ~~~  259 (309)
                      +..
T Consensus       406 i~~  408 (638)
T 3sbq_A          406 MEE  408 (638)
T ss_dssp             HHH
T ss_pred             ccH
Confidence            965

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=88.91  E-value=8.9  Score=31.71  Aligned_cols=226  Identities=12%  Similarity=0.134  Sum_probs=103.1

Q ss_pred             CEEEEeeCCCcEEEEEcCCCceeee-eeccccceeEEEEecCCCEEEEEcCC----C----CCceeEEEEccCCceEEE-
Q 021648           24 SYLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKN----G----WDESLRLLSLHDNKYLRY-   93 (309)
Q Consensus        24 ~~l~t~s~D~~v~iWd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~----g----~d~~i~~~d~~~~~~~~~-   93 (309)
                      .+++-|+.  .+..||..+++-... +..........+...++..++.+...    +    ....+..||..+++-... 
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   94 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP   94 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred             hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence            34555553  478899887664331 11101111222333445545554310    1    011266788776642211 


Q ss_pred             -eeecccCEEEEEecCCCCeEEEecCC-------CcEEEeeCCCceeeeeeeecC---ceeEEECCCCcEE-EEEE----
Q 021648           94 -FKGHHDRVVSLSLCSSKDCFISGSLD-------RTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVF-AVAF----  157 (309)
Q Consensus        94 -~~~h~~~v~~v~~~~~~~~l~s~s~D-------g~v~~Wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~----  157 (309)
                       +...... .++.. -+++.++.|+.+       ..+.++|+.+.+....-.++.   ....+. .++.++ .++.    
T Consensus        95 ~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~  171 (318)
T 2woz_A           95 PLPSARCL-FGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDK  171 (318)
T ss_dssp             CBSSCBCS-CEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSS
T ss_pred             CCCccccc-cceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCC
Confidence             1100011 11121 256777777754       357788887776543322211   111222 233333 3332    


Q ss_pred             --CCEEEEEECCCCCcCCceEEE-eCCCCCCCeEEEEccCCCEEEEEeCCC-----cEEEEECCCCeEeEEeeecCCCCC
Q 021648          158 --GGYIRMFDARKYEKGPFDIFS-VGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVKPVSRN  229 (309)
Q Consensus       158 --~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~v~~s~dg~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~  229 (309)
                        -+.+..||+.+.+   ..... .........++.  -++++++.|+.++     .+.+||+.+.+-..... .+....
T Consensus       172 ~~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~  245 (318)
T 2woz_A          172 KCTNRVFIYNPKKGD---WKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE-FPQERS  245 (318)
T ss_dssp             CBCCCEEEEETTTTE---EEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC-CSSCCB
T ss_pred             CccceEEEEcCCCCE---EEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCC-CCCccc
Confidence              1357888876421   11110 000111112222  3678888887543     46788887765432211 111111


Q ss_pred             ccceEEECCCCCEEEEEcCC--------------CcEEEEECCCCce
Q 021648          230 STLEASFSPEGMFVISGSGD--------------GSVYAWSVRSGKE  262 (309)
Q Consensus       230 ~~~~~~~sp~g~~l~s~s~D--------------g~i~vwd~~~~~~  262 (309)
                      .  ..+...+++.++.|+.+              ..+.+||+.+.+-
T Consensus       246 ~--~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  290 (318)
T 2woz_A          246 S--ISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW  290 (318)
T ss_dssp             S--CEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred             c--eEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence            1  11222367787887754              3578889877543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=87.42  E-value=12  Score=31.45  Aligned_cols=94  Identities=9%  Similarity=-0.007  Sum_probs=44.4

Q ss_pred             CCCEEEEEeC------CCcEEEEEC--CCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC----------------
Q 021648          194 DGRLMLLTTM------EGHIHVLDS--FRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD----------------  249 (309)
Q Consensus       194 dg~~l~~~~~------dg~v~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D----------------  249 (309)
                      ++++++.|+.      ...+..||.  .+.+-.. ....+.........+...+++.++.|+.+                
T Consensus       200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~  278 (357)
T 2uvk_A          200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK-LAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAH  278 (357)
T ss_dssp             TTEEEEECCEEETTEECCCEEEEECC---CEEEE-CCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTT
T ss_pred             CCEEEEEeeecCCCcccCceEEEEecCCCCcEEe-cCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceecc
Confidence            6777777764      235667775  4333221 11111111111112333467777888742                


Q ss_pred             ------CcEEEEECCCCc--eEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648          250 ------GSVYAWSVRSGK--EVASWMSFDTEPPVIKWTPGSLMFVTGSS  290 (309)
Q Consensus       250 ------g~i~vwd~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~s~~~  290 (309)
                            ..+.+||+.+.+  .+..++.-...  ..+...++++++.|+.
T Consensus       279 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~  325 (357)
T 2uvk_A          279 EGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGE  325 (357)
T ss_dssp             TTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEE
T ss_pred             ccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeee
Confidence                  257899987643  34433321111  2223346788888774

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=86.06  E-value=15  Score=31.19  Aligned_cols=115  Identities=7%  Similarity=-0.013  Sum_probs=70.4

Q ss_pred             CEEEEeeCCCcEEEEEcCCCceeeeeeccc-cceeEEEE--ecCCCEEEEEcCCCCCceeEEEEccCCceEEEeee----
Q 021648           24 SYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCF--TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG----   96 (309)
Q Consensus        24 ~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~-~~v~~~~~--~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~----   96 (309)
                      .+++.++.||.|.-.|..+|+.+..+.... .+.....-  .+.+..++.... ..|+.+..++.++|.....+.-    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p-~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEP-FGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECC-STTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEE-CCCCEEEEEECCCCcEEeeeccccce
Confidence            478889999999999999999988877651 11111000  011223443311 1388999999888765444331    


Q ss_pred             cccCEEEE---Ee-----cCCCCeEEEecCCCcEEEeeCCCceeeeeeeec
Q 021648           97 HHDRVVSL---SL-----CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ  139 (309)
Q Consensus        97 h~~~v~~v---~~-----~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~  139 (309)
                      ...++..-   .+     ...+..+.+++.++.+...|+++++.+......
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            11122210   00     013457889999999999999999887776543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=85.29  E-value=14  Score=30.35  Aligned_cols=203  Identities=9%  Similarity=0.085  Sum_probs=96.1

Q ss_pred             ceeEEEEccCCceEE-EeeecccCEEEEEecCCCCeEEEecC----C-------CcEEEeeCCCceeeeeeeecC---ce
Q 021648           78 ESLRLLSLHDNKYLR-YFKGHHDRVVSLSLCSSKDCFISGSL----D-------RTVLLWDQRAEKCQGLLRVQG---RP  142 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~----D-------g~v~~Wd~~~~~~~~~~~~~~---~~  142 (309)
                      ..+..||..+++-.. .+.....+........+++.++.|+.    +       ..+..+|+.+++....-.++.   ..
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~   92 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF   92 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence            467788887766221 11111122222233356777788874    1       126778888776543222221   11


Q ss_pred             eEEECCCCcEEEEEEC--------CEEEEEECCCCCcCCceEE-EeCCCCCCCeEEEEccCCCEEEEEeC-C-----CcE
Q 021648          143 AAAYDDQGLVFAVAFG--------GYIRMFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTTM-E-----GHI  207 (309)
Q Consensus       143 ~~~~~~~~~~~~~~~~--------~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~v~~s~dg~~l~~~~~-d-----g~v  207 (309)
                      ..+......++.++.+        +.+.+||+...+   .... .+........  +..-++++++.|+. +     ..+
T Consensus        93 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~  167 (315)
T 4asc_A           93 GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK---WGESDPLPYVVYGHT--VLSHMDLVYVIGGKGSDRKCLNKM  167 (315)
T ss_dssp             EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE---EEECCCCSSCCBSCE--EEEETTEEEEECCBCTTSCBCCCE
T ss_pred             eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc---EeECCCCCCccccee--EEEECCEEEEEeCCCCCCcccceE
Confidence            1222222233333321        357777765421   0000 0000111112  22347788888876 2     468


Q ss_pred             EEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC-----cEEEEECCCCce--EEEeecCCCCCcEEEECC
Q 021648          208 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-----SVYAWSVRSGKE--VASWMSFDTEPPVIKWTP  280 (309)
Q Consensus       208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg-----~i~vwd~~~~~~--~~~~~~~~~~v~~l~~~p  280 (309)
                      .+||+.+.+-...-.   .........+..-+++.++.|+.++     .+.+||..+.+-  +..++. ...-.+++. -
T Consensus       168 ~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~  242 (315)
T 4asc_A          168 CVYDPKKFEWKELAP---MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ-ERSSLSLVS-L  242 (315)
T ss_dssp             EEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS-CCBSCEEEE-E
T ss_pred             EEEeCCCCeEEECCC---CCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC-cccceeEEE-E
Confidence            889988765433211   1111111112223778888887765     588999987543  222211 111112222 2


Q ss_pred             CeeEEEEccc
Q 021648          281 GSLMFVTGSS  290 (309)
Q Consensus       281 ~~~~l~s~~~  290 (309)
                      ++++++.|+.
T Consensus       243 ~~~l~v~GG~  252 (315)
T 4asc_A          243 VGTLYAIGGF  252 (315)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEECCc
Confidence            5677777765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=84.20  E-value=8.4  Score=35.26  Aligned_cols=116  Identities=12%  Similarity=0.124  Sum_probs=67.8

Q ss_pred             EEECCCCcEEEEEE--CCEEEEEECCCCCc----C---CceEEEeCCCC-CCCeEEEEccCCCEEEEEeCCCcEEEEECC
Q 021648          144 AAYDDQGLVFAVAF--GGYIRMFDARKYEK----G---PFDIFSVGGDI-SDANVVKFSNDGRLMLLTTMEGHIHVLDSF  213 (309)
Q Consensus       144 ~~~~~~~~~~~~~~--~~~i~~~d~~~~~~----~---~~~~~~~~~~~-~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~  213 (309)
                      +...|++.++.++.  +.++.++|+++...    .   +-......... ....-.+|.++|..+.+-..|..|.-|++.
T Consensus       328 v~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~  407 (638)
T 3sbq_A          328 CNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNME  407 (638)
T ss_dssp             EEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             eeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEecc
Confidence            45567887776664  57899999875311    0   00111111111 133557899999777777789999999975


Q ss_pred             CC----------eEeEEeeecCC--CCCccceEEECCCCCEEEEE---cCCCcE----------EEEECCC
Q 021648          214 RG----------TLLSTYNVKPV--SRNSTLEASFSPEGMFVISG---SGDGSV----------YAWSVRS  259 (309)
Q Consensus       214 ~~----------~~~~~~~~~~~--~~~~~~~~~~sp~g~~l~s~---s~Dg~i----------~vwd~~~  259 (309)
                      +.          ..+.....+.+  |......-.-.|||++|++.   |.|..+          .+.|+..
T Consensus       408 ~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG  478 (638)
T 3sbq_A          408 EAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG  478 (638)
T ss_dssp             HHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred             HHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence            43          34444443321  11110111235899999998   667644          7888853

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=82.78  E-value=1.9  Score=40.49  Aligned_cols=39  Identities=23%  Similarity=0.473  Sum_probs=31.3

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS   51 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~   51 (309)
                      +..|.++.+.  ..+++|-+.|+++|+||+.++.++.+..-
T Consensus       221 ~~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          221 DSVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             CCEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             CceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            3457766654  67999999999999999999998876544

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.29  E-value=6  Score=38.84  Aligned_cols=38  Identities=13%  Similarity=0.061  Sum_probs=32.6

Q ss_pred             CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe
Q 021648          229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW  266 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~  266 (309)
                      +.+.+++..++..+++|-+.|+++|+|++.+++++.+.
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            34566778889999999999999999999999988764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=81.56  E-value=28  Score=30.89  Aligned_cols=106  Identities=8%  Similarity=0.003  Sum_probs=56.8

Q ss_pred             ceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCc---eeeeee-----c----cccceeEEEEecC---CCEEEEEcCCCC
Q 021648           13 RISSMDFHKSSS-YLVTASDDESIRLYDVTAAT---CLKTIN-----S----KKYGVDLVCFTSH---PTTVIYSSKNGW   76 (309)
Q Consensus        13 ~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~---~~~~~~-----~----~~~~v~~~~~~~~---~~~~~~~s~~g~   76 (309)
                      .-..|+|.|||+ +|+.+...|.|++++.+...   .+..+.     +    .+.....++|+|+   ...++++.....
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            345899999996 45556688999999754321   111111     1    1334667888875   223333211100


Q ss_pred             C----------ceeEEEEccC----------CceEEEee----ecccCEEEEEecCCCCeEEEecCCC
Q 021648           77 D----------ESLRLLSLHD----------NKYLRYFK----GHHDRVVSLSLCSSKDCFISGSLDR  120 (309)
Q Consensus        77 d----------~~i~~~d~~~----------~~~~~~~~----~h~~~v~~v~~~~~~~~l~s~s~Dg  120 (309)
                      +          ..|.-|.+..          .+.+..+.    .|  ....|.|.|||++.++.+..+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H--~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKH--LGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSS--CEEEEEECTTSCEEEEECCTT
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcc--cCCcEeECCCCcEEEEeCCCC
Confidence            1          1333344432          12222222    24  357899999999777766433

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=81.08  E-value=8.1  Score=38.73  Aligned_cols=38  Identities=13%  Similarity=0.061  Sum_probs=32.4

Q ss_pred             CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe
Q 021648          229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW  266 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~  266 (309)
                      +.+.+++..++..++++-+.|+++|||++.+++++.+.
T Consensus       238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            34556677789999999999999999999999988764

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=80.88  E-value=38  Score=31.95  Aligned_cols=234  Identities=10%  Similarity=0.047  Sum_probs=107.9

Q ss_pred             EEEecCCCEEEEE-cCCCCC-ceeEEEEccCCceEEE-ee-eccc------CEEEEEecCCCCeEEEe----------cC
Q 021648           59 VCFTSHPTTVIYS-SKNGWD-ESLRLLSLHDNKYLRY-FK-GHHD------RVVSLSLCSSKDCFISG----------SL  118 (309)
Q Consensus        59 ~~~~~~~~~~~~~-s~~g~d-~~i~~~d~~~~~~~~~-~~-~h~~------~v~~v~~~~~~~~l~s~----------s~  118 (309)
                      .|++|+++.++++ |.+|.| ..++++|+++++.+.. +. .-+.      ....++|..+...+++.          +.
T Consensus       135 ~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~  214 (711)
T 4hvt_A          135 SNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLY  214 (711)
T ss_dssp             EECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSS
T ss_pred             eecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCC
Confidence            3488999987654 444444 5899999999886531 11 0000      00233665333333432          12


Q ss_pred             CCcEEEeeCCCceeeeee--eecC--c-eeEEECCCCc------EEEEEEC---CEEEEEECCCCCcCCceEEEeCCCCC
Q 021648          119 DRTVLLWDQRAEKCQGLL--RVQG--R-PAAAYDDQGL------VFAVAFG---GYIRMFDARKYEKGPFDIFSVGGDIS  184 (309)
Q Consensus       119 Dg~v~~Wd~~~~~~~~~~--~~~~--~-~~~~~~~~~~------~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~  184 (309)
                      -..|+.|-+-+......+  ....  . .......++.      ++..+.+   ..+.+.|..... +  ....+... .
T Consensus       215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~--~~~~l~~~-~  290 (711)
T 4hvt_A          215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKN-L--KLQKINMP-S  290 (711)
T ss_dssp             BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSS-C--EEEECCSC-T
T ss_pred             CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCC-C--cceEeecC-C
Confidence            356888865444322111  1111  1 1122222222      2222212   345555543211 1  11222111 1


Q ss_pred             CCeEEEEccCCCEEEEEe----------CCCcEEEEECCCCe-------EeEEeeecCCCCCccceEEECCCCCEEEEEc
Q 021648          185 DANVVKFSNDGRLMLLTT----------MEGHIHVLDSFRGT-------LLSTYNVKPVSRNSTLEASFSPEGMFVISGS  247 (309)
Q Consensus       185 ~~~~v~~s~dg~~l~~~~----------~dg~v~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s  247 (309)
                      + ..+..+.++.+++...          ..+.|...|+.++.       ....+ ..+.....+..+.+.++ ..+++..
T Consensus       291 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~-~l~~~~~  367 (711)
T 4hvt_A          291 D-ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKIL-FTPTANEVFNFISTTKD-RVFLATY  367 (711)
T ss_dssp             T-CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEE-ECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred             c-ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEE-ECCCCCCeEEEEEEECC-EEEEEEE
Confidence            2 2233455666655331          35678888875531       11111 11222334556777765 6777777


Q ss_pred             CCC--cEEEEECCCCc-eEEEeecC--CCCCcEEEECCCe-eEEEEccce---EEEeeecC
Q 021648          248 GDG--SVYAWSVRSGK-EVASWMSF--DTEPPVIKWTPGS-LMFVTGSSE---LSFWIPDL  299 (309)
Q Consensus       248 ~Dg--~i~vwd~~~~~-~~~~~~~~--~~~v~~l~~~p~~-~~l~s~~~d---~~~~~~~~  299 (309)
                      .++  .++++|+.+++ .+..+...  .+.+..+..++++ .++++.++.   -.++..++
T Consensus       368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~  428 (711)
T 4hvt_A          368 DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK  428 (711)
T ss_dssp             ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence            776  46777776664 22321112  2345555666765 344544432   45555444

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=80.65  E-value=1.3  Score=44.51  Aligned_cols=38  Identities=32%  Similarity=0.463  Sum_probs=31.4

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN   50 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~   50 (309)
                      .+.++...++..++.|-+.|+++|||++.++.|+.+..
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            34455666788899999999999999999999987743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	309
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-21
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.6 bits (223), Expect = 2e-21
 Identities = 52/311 (16%), Positives = 112/311 (36%), Gaps = 27/311 (8%)

Query: 6   SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 65
           +   +   ++ + FH   S +V+AS+D +I+++D       +T+      V  + F    
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 66  TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW 125
             +   S +   +          + +R   GH   V S+S+  + D  +S S D+T+ +W
Sbjct: 72  KLLASCSADMTIKLWD---FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 126 DQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEK----------- 171
           + +   C                  D  L+ + +    +R++     E            
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 172 -----GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 226
                 P   +S   + + +   K    G  +L  + +  I + D   G  L T      
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---G 245

Query: 227 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV 286
             N      F   G F++S + D ++  W  ++ + + +  + +     + +   +   V
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305

Query: 287 TGSSE--LSFW 295
           TGS +  +  W
Sbjct: 306 TGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.0 bits (167), Expect = 5e-14
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 3/126 (2%)

Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
            E   S         +    K   +L++ S D++I+++DV+   CL T+      V  V 
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 254

Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           F S    ++  +    D++LR+    + + ++    H   V SL    +    ++GS+D+
Sbjct: 255 FHSGGKFILSCA---DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311

Query: 121 TVLLWD 126
           TV +W+
Sbjct: 312 TVKVWE 317

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.1 bits (201), Expect = 2e-18
 Identities = 53/300 (17%), Positives = 94/300 (31%), Gaps = 10/300 (3%)

Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
           M    + R +  +I +M +   S  LV+AS D  + ++D      +  I  +   V    
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 120
           +      V     +       L +   N  +      H   +S       +  ++ S D 
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 121 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQ---GLVFAVAFGGYIRMFDARKYEKGPFDIF 177
           T  LWD    +             +        L  + A     +++D R+         
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC----RQ 220

Query: 178 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 237
           +  G  SD N + F  +G      + +    + D      L TY+   +    T   SFS
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT-SVSFS 279

Query: 238 PEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW 295
             G  +++G  D +   W              D     +  T   +   TGS +  L  W
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.3 bits (173), Expect = 1e-14
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 3/123 (2%)

Query: 5   MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 64
            +F  +   I+++ F  + +   T SDD + RL+D+ A   L T +       +   +  
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279

Query: 65  PT-TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL 123
            +  ++ +     D +  +             GH +RV  L +        +GS D  + 
Sbjct: 280 KSGRLLLAG--YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337

Query: 124 LWD 126
           +W+
Sbjct: 338 IWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.1 bits (105), Expect = 6e-06
 Identities = 30/211 (14%), Positives = 70/211 (33%), Gaps = 7/211 (3%)

Query: 89  KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---AAA 145
           +  R  +GH  ++ ++   +     +S S D  +++WD         + ++       A 
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 146 YDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG 205
                 V          +++ +  E        + G     +  +F +D +++  +    
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 206 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS 265
                                     +  S +P+    +SG+ D S   W VR G    +
Sbjct: 166 CALWDIETG----QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221

Query: 266 WMSFDTEPPVIKWTPGSLMFVTGSSELSFWI 296
           +   +++   I + P    F TGS + +  +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRL 252

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.4 bits (168), Expect = 6e-14
 Identities = 59/330 (17%), Positives = 115/330 (34%), Gaps = 37/330 (11%)

Query: 9   DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD---------LV 59
           D+   +  + F     YL T  +  + ++Y V+  + +  ++                  
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 60  CFTSHPTTVIYSSKN------GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 113
               +  +V +S           D  +R+  + + K +   +GH   + SL    S D  
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 114 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGY---IRMFDARK-- 168
           +SGS DRTV +WD R  +C   L ++          G    +A G     +R++D+    
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 169 -YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-- 225
             E+   +  S  G       V F+ DG+ ++  +++  + + +       S        
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 226 -------VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE------ 272
                    ++  L  + +    +++SGS D  V  W  +SG  +               
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358

Query: 273 PPVIKWTPGSLMFVTGSSELSFWIPDLSKL 302
                  P   +F TGS +    I    K+
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 3e-11
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query: 5   MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA------------TCLKTINSK 52
            S   +   + S+ F +    +V+ S D S++L+++  A            TC  T    
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307

Query: 53  KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 112
           K  V  V  T +   ++  S    D  +          L   +GH + V+S+++ +    
Sbjct: 308 KDFVLSVATTQNDEYILSGS---KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364

Query: 113 ------FISGSLDRTVLLWD 126
                 F +GS D    +W 
Sbjct: 365 GPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 31/235 (13%), Positives = 68/235 (28%), Gaps = 28/235 (11%)

Query: 91  LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD-- 148
           L     H   V  +   +  +   +G  ++T  ++          L          ++  
Sbjct: 55  LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLN 113

Query: 149 -------QGLVFAVAFG--------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 193
                     + +V F         G           +    +  + G   D   + +  
Sbjct: 114 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173

Query: 194 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 253
            G  ++  + +  + + D   G          +    T  A    +G ++ +GS D +V 
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQ---CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 230

Query: 254 AWSVRSGKEVASWMSFDTEPPV-------IKWTPGSLMFVTGSSELSFWIPDLSK 301
            W   +G  V    S +            + +T      V+GS + S  + +L  
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.8 bits (161), Expect = 3e-13
 Identities = 41/301 (13%), Positives = 84/301 (27%), Gaps = 26/301 (8%)

Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK---KYGVDLVCFTSHPTTVIY 70
           IS +    S S L+  S D S+ +Y          +      K+ +    F  +    IY
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 71  SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 130
                 +     L    +          +  +        D  I+ S D  + + D R  
Sbjct: 74  VGTVQGEILKVDLIGSPSFQ-ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 131 KCQGLLRVQGRPAAAYDDQGLVFAVAFG---------GYIRMFDARKYEKGPFDIFSVGG 181
               +               +                  ++ F     E     I   G 
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192

Query: 182 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA------- 234
                +V     +      ++++G + V            + +   R   L         
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252

Query: 235 -----SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS 289
                 FSP   F+ +   DG +  W++++ K++ ++  F+    V+K      +    +
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLAT 311

Query: 290 S 290
           S
Sbjct: 312 S 312

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 7/69 (10%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 89  KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD 148
           + ++  +   D +  + +  SK   +  S D ++ ++    +     L        +   
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL------QSLRY 55

Query: 149 QGLVFAVAF 157
           +  +    F
Sbjct: 56  KHPLLCCNF 64

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 15/135 (11%), Positives = 35/135 (25%), Gaps = 8/135 (5%)

Query: 144 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM 203
           ++ D +  V      G       R   +               N ++FS   + +     
Sbjct: 212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS 271

Query: 204 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR----S 259
           +G I   +      +  +       N       +     +   + D +    +       
Sbjct: 272 DGIISCWNLQTRKKIKNFA----KFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIE 327

Query: 260 GKEVASWMSFDTEPP 274
               + ++ FD E P
Sbjct: 328 LNASSIYIIFDYENP 342

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 9e-04
 Identities = 10/96 (10%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 9   DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV 68
           +    ++S++F     +L TA  D  I  +++     +K   +K     +V        +
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF-AKFNEDSVVKIACSDNIL 307

Query: 69  IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSL 104
             ++ +   ++       +    +  + +   +  +
Sbjct: 308 CLATSDDTFKT-------NAAIDQTIELNASSIYII 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 4e-12
 Identities = 47/326 (14%), Positives = 100/326 (30%), Gaps = 51/326 (15%)

Query: 19  FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 78
                + +V+ SDD +++++      CL+T+     GV       +      + +     
Sbjct: 23  LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82

Query: 79  SLRL-------------LSLHDNKYLRYFKGHHDRVVSLSLCSSKDC------------- 112
           +                +        R   G  D  + +    +  C             
Sbjct: 83  NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 142

Query: 113 -------FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA-FGGYIRMF 164
                   +SG+ D  V +WD   E C   L+       +    G+          IR++
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVW 202

Query: 165 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK 224
           D                    +          +++    +  + + D   G  L T    
Sbjct: 203 DVETGNCIHTL------TGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP 256

Query: 225 PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP---PV--IKWT 279
              +++     F+    FVI+ S DG+V  W +++G+ + + ++ ++      V  I+ +
Sbjct: 257 NKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314

Query: 280 PGSLMFVTGSS----ELSFWIPDLSK 301
              L+   GS     E    + D   
Sbjct: 315 NTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 40/242 (16%), Positives = 71/242 (29%), Gaps = 41/242 (16%)

Query: 89  KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD 148
           K  +  KGH D V++  L    +  +SGS D T+ +W     KC   L        +   
Sbjct: 7   KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 65

Query: 149 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDIS------------------------ 184
           +  +               +  +    ++     +                         
Sbjct: 66  RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 125

Query: 185 -----------DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 233
                       A V     DGR ++    +  + V D    T L T             
Sbjct: 126 TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY---- 181

Query: 234 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELS 293
            S   +G+ V+SGS D S+  W V +G  + +     +    ++     L+     S + 
Sbjct: 182 -SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVK 240

Query: 294 FW 295
            W
Sbjct: 241 IW 242

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 8e-11
 Identities = 28/294 (9%), Positives = 72/294 (24%), Gaps = 16/294 (5%)

Query: 9   DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI-----NSKKYGVDLVCFTS 63
           ++   + ++     + ++ T      ++++D++       +      ++   +       
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 64  HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL 123
              T+I   +        L +                        SK CF   S     +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 124 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI 183
                    +         +              G    +      E            I
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227

Query: 184 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV 243
                + +   G  + +     ++ VL   +           +  +  L   F+  G + 
Sbjct: 228 ---FSLGYCPTGEWLAVGMESSNVEVLHVNK----PDKYQLHLHESCVLSLKFAYCGKWF 280

Query: 244 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW 295
           +S   D  + AW    G  +       +       +      VTGS +   + +
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 9/111 (8%), Positives = 23/111 (20%), Gaps = 46/111 (41%)

Query: 16  SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG 75
           S+ F     + V+   D  +  +       +                             
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-------------------------- 303

Query: 76  WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 126
                                    V+S  +       ++GS D+   +++
Sbjct: 304 --------------------KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 10  YNGRISSMDFHKSSSYLVTASDDESIRLYDV 40
            +  + S D      Y+VT S D+   +Y+V
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.8 bits (140), Expect = 2e-10
 Identities = 34/293 (11%), Positives = 85/293 (29%), Gaps = 9/293 (3%)

Query: 11  NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY 70
           N  I+++        L +A  +  I  +D++     +        +     T+    +  
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71

Query: 71  SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 130
            S +   + +       +           + + L++ +  D  ++       +    +  
Sbjct: 72  VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 131

Query: 131 KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
           +           ++          VA GG        K               ++   V 
Sbjct: 132 EVP-----ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186

Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 250
           FSN+G  ++ T     +          L+  N            S+SP+ + + +GS D 
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246

Query: 251 SVYAWSVRSGKEVASWMSFDTEPPVIK---WTPGSLMFVTGSSELSFWIPDLS 300
           SV  W++    +    +        +    W   +   V+   + +    ++ 
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 3e-04
 Identities = 7/49 (14%), Positives = 15/49 (30%)

Query: 89  KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR 137
              +   GH+  + +LS  +      S   +  +  WD        +  
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 51

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.1 bits (126), Expect = 1e-08
 Identities = 27/275 (9%), Positives = 75/275 (27%), Gaps = 34/275 (12%)

Query: 20  HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY-------GVDLVCFTSHPTTVIYSS 72
             S +        + + ++D      +  I             V ++   +    +++  
Sbjct: 83  STSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFF- 141

Query: 73  KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD------ 126
                 +   LS+      +  K      +      +      GS   ++   D      
Sbjct: 142 -LFGSSAAAGLSVPGASDDQLTKSASCFHIHPG---AAATHYLGSCPASLAASDLAAAPA 197

Query: 127 ---QRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK------YEKGPFDIF 177
                  +C G      + A A     LV+AVA         A         +       
Sbjct: 198 AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRK 257

Query: 178 SVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSR----NSTL 232
           +     +   +V    +   +++ T+E     +  +   + ++    +        + + 
Sbjct: 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSD 317

Query: 233 EASFSPEG--MFVISGSGDGSVYAWSVRSGKEVAS 265
               + +G      + +G   +  +   S ++ +S
Sbjct: 318 AIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 31/292 (10%), Positives = 68/292 (23%), Gaps = 40/292 (13%)

Query: 23  SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW------ 76
            S +      + + ++D         I        LV   ++P     +           
Sbjct: 68  FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV--GTYPWMTSLTPDGKTLLFYQF 125

Query: 77  --DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 134
               ++ ++ L    + R         +     ++ D F     D ++       E    
Sbjct: 126 SPAPAVGVVDLEGKAFKRMLDVPDCYHIF---PTAPDTFFMHCRDGSLAKVAFGTEGTPE 182

Query: 135 LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDA-----------------RKYEKGPFDIF 177
           +   +                   G +                         E       
Sbjct: 183 ITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER 242

Query: 178 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA--- 234
           + G        V +      + L   +       +    +    + K   R +  E    
Sbjct: 243 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV-VVLDAKTGERLAKFEMGHE 301

Query: 235 ----SFSPEG--MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP 280
               + S +   +     +GD ++Y     SG+E+ S       P VI    
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.1 bits (120), Expect = 5e-08
 Identities = 41/296 (13%), Positives = 88/296 (29%), Gaps = 11/296 (3%)

Query: 12  GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS 71
           G    +    +   +   +   S+    V + T  +      +   +   +         
Sbjct: 18  GTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 72  SKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRA 129
             +G        +   +            V  +S  S   +   +    +R   ++    
Sbjct: 77  DVHGNVRIWDT-TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135

Query: 130 EKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV 189
               G L  Q R   + D +         G      A           + G      + V
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 195

Query: 190 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS----RNSTLEASFSPEGMFVIS 245
           +++ DG L   T  +G I + +   GT    +    +       S    ++SP+G  + S
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 255

Query: 246 GSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD 298
            S D ++  W+V + K   +  +    E   +         V+ S+   ++F  P+
Sbjct: 256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 30/257 (11%), Positives = 66/257 (25%), Gaps = 10/257 (3%)

Query: 7   FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP- 65
           + +++ + +      S  Y  +     ++R++D T  T +       +   +   +    
Sbjct: 54  YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 113

Query: 66  -TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 124
              +    +         L                        S     ISGS D TV +
Sbjct: 114 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 173

Query: 125 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG------PFDIFS 178
           ++    K +       +   +          A  G            G        D   
Sbjct: 174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 233

Query: 179 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 238
                     + +S DG  +   + +  I + +     +  T  V     +  L      
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL--GIIW 291

Query: 239 EGMFVISGSGDGSVYAW 255
               ++S S +G +   
Sbjct: 292 TKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 12/78 (15%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 5   MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTS 63
           +    ++G +  + +    + + +AS D++I++++V      KTI    +     +    
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291

Query: 64  HPTTVIYSSKNG----WD 77
               ++  S NG     +
Sbjct: 292 TKQALVSISANGFINFVN 309

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 7e-08
 Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 4/119 (3%)

Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           I+ + F    +Y++T +DD+ IR+YD      L  ++    GV  + +      ++ S  
Sbjct: 16  ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGS 71

Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 132
                 +  +      ++        R + +    +    ++GS D T+ +W    E  
Sbjct: 72  TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 130

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF 294
               E  +VI+G+ D  +  +   + K +      D     +K+  G +  V+GS++ + 
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTV 76

Query: 295 W 295
            
Sbjct: 77  R 77

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 5e-04
 Identities = 16/131 (12%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 94  FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGL 151
            +GH   V++  L    +  I+G+ D+ + ++D   +K    L        A  Y   G+
Sbjct: 8   LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66

Query: 152 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 211
           + +        +      +     +F           +    + + ++  + +  +HV  
Sbjct: 67  LVSG--STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 212 SFRGTLLSTYN 222
             + + +  + 
Sbjct: 125 LPKESSVPDHG 135

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 38/312 (12%), Positives = 89/312 (28%), Gaps = 19/312 (6%)

Query: 5   MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 64
           +    ++G + ++ +      LV+ S D ++R++D+    C   +               
Sbjct: 47  LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC-THVFEGHNSTVRCLDIVE 104

Query: 65  PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 124
              + Y      D +L +  L     +      HD  +          F+         +
Sbjct: 105 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 164

Query: 125 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDIS 184
                     +          +D   +       G+     +  Y+       S   D +
Sbjct: 165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224

Query: 185 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE----------- 233
                  + +    L         +  S +  + +  +      ++              
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNL 284

Query: 234 ---ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV-IKWTPGSLMFVTGS 289
               +F      ++SGS +     +++RSGK V + +  D +    + +   +L+     
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEK 343

Query: 290 SELSF-WIPDLS 300
              SF  I D S
Sbjct: 344 DGQSFLEILDFS 355

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 35/358 (9%), Positives = 86/358 (24%), Gaps = 66/358 (18%)

Query: 11  NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY 70
           +  I S+     +S+ V+ S D  ++++D          +             H   +  
Sbjct: 14  DADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 71  SSKN----------GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK---------- 110
             ++           +   L    +      +        ++   +              
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131

Query: 111 -----DCFISGSLDRTVLLWD---------QRAEKCQGLLRVQGRPAAAYDDQGLVFAVA 156
                   ++  +  T  +W                   L +QG   +         +V 
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191

Query: 157 FGG-------------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM 203
                            I      +         S+  + +    VKFS  G L+ +   
Sbjct: 192 ISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD 251

Query: 204 EGHIHVLDSFRGTLLSTYNVKPVSRNST-------------LEASFSPEGMFVISGSGDG 250
                 +  +            V  +S+             +  SF+  G  + S   DG
Sbjct: 252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 311

Query: 251 SVYAWSVRSGKEVASWM----SFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA 304
            +  W V++ + + +        + E  ++                  ++    + G 
Sbjct: 312 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 369

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 33/302 (10%), Positives = 90/302 (29%), Gaps = 33/302 (10%)

Query: 7   FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT 66
             + +  +  + +      +V+   D +I+++D     C + +      V  + +     
Sbjct: 11  RSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68

Query: 67  TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 126
               S        +    + +          H          +    ++ S DR++ +WD
Sbjct: 69  ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL-------RFNNGMMVTCSKDRSIAVWD 121

Query: 127 QRAEKC----QGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD 182
             +       + L+  +        D   + + +    I++++    E     + ++ G 
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF----VRTLNGH 177

Query: 183 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 242
                +       RL++  + +  I + D   G  L                    +   
Sbjct: 178 --KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR-----CIRFDNKR 230

Query: 243 VISGSGDGSVYAWSVRSGKEVASWMSFDT-------EPPVIKWTPGSLMFVTGSSE--LS 293
           ++SG+ DG +  W + +  +  +                V +        V+ S +  + 
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTIL 290

Query: 294 FW 295
            W
Sbjct: 291 IW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 10/116 (8%)

Query: 17  MDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG- 75
                    +V+ S D +IRL+D+    CL+ +   +  V   C       ++  + +G 
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGK 239

Query: 76  ---WD--ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 126
              WD   +L   +      LR    H  RV  L     +   +S S D T+L+WD
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWD 293

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 41/315 (13%), Positives = 87/315 (27%), Gaps = 32/315 (10%)

Query: 13  RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSS 72
                D+   + + VT  D   I L D +       +++  Y V +   ++    +    
Sbjct: 22  TQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIG 80

Query: 73  KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD---CFISGSLDRTVLLWDQRA 129
           ++G    + L             G   R +  S     +              ++ D   
Sbjct: 81  RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 140

Query: 130 EKCQGLLRVQGRP---------------AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPF 174
            + + +   +G                  A++     +  V   G I + D         
Sbjct: 141 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT 200

Query: 175 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLE 233
              S    + D          R  +      + + V+D+  G L++  +    + +    
Sbjct: 201 TEISAERFLHD---GGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG 257

Query: 234 ASFSPEG---MFVISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSLMFVTGS 289
           A+F       ++  S  GD SV             +W   D+ P       G       +
Sbjct: 258 ANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP-----ALGGGSLFIKT 312

Query: 290 SELSFWIPDLSKLGA 304
              S ++   + L  
Sbjct: 313 HPNSQYLYVDATLNP 327

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 29/297 (9%), Positives = 72/297 (24%), Gaps = 63/297 (21%)

Query: 14  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73
           IS   ++K  + +    ++  + +Y+ +    ++                          
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ-------------------------- 43

Query: 74  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133
                            +   K H+ +V  +      +  ++   DR   +W  +    +
Sbjct: 44  -----------------VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86

Query: 134 GLLRVQGRPAAAYD-----DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANV 188
             L +     AA       ++      +    I +    +               S    
Sbjct: 87  PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 146

Query: 189 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE--------------- 233
           + +  +  L+   + +    +  ++   +       P                       
Sbjct: 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG 206

Query: 234 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 290
             FS  G  V   S D +V          VA+  S       + +   S +   G  
Sbjct: 207 VCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD 263

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 37/304 (12%), Positives = 88/304 (28%), Gaps = 32/304 (10%)

Query: 6   SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 65
             +++NG+++ +D+   S+ +VT   D +  ++ +   T   T+   +      C    P
Sbjct: 46  ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 105

Query: 66  --TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR-VVSLSLCSSKDCFISGSLDRTV 122
                   S +           +D    ++ K      V+SL    +     +GS D   
Sbjct: 106 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 165

Query: 123 LLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD 182
            ++    ++ +         +     + +  + +  G++                 V   
Sbjct: 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH---------------GVCFS 210

Query: 183 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 242
            + + V   S+D  + L    +       +                   L  +F  E   
Sbjct: 211 ANGSRVAWVSHDSTVCLADADKKMAVATLASET-------------LPLLAVTFITESSL 257

Query: 243 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 302
           V +G  D     ++  S     S+      P        +      + +        +  
Sbjct: 258 VAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 316

Query: 303 GAYV 306
           GA +
Sbjct: 317 GAGL 320

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 21/205 (10%), Positives = 47/205 (22%), Gaps = 25/205 (12%)

Query: 86  HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA 145
            + + +      +    + +  +        S        D+          V  +P   
Sbjct: 166 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS--FEVVSKPFVI 223

Query: 146 YDDQGLVFAVAF---------------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190
               G                        Y R             I  +   I   +V  
Sbjct: 224 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPV 283

Query: 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 250
                        +G +   D     +          +N+  +   S +   V+    DG
Sbjct: 284 HGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-------KNNLTDLRLSADRKTVMVRKDDG 336

Query: 251 SVYAWSVRSGKEVASWMSFDTEPPV 275
            +Y + +   ++  + +  D  P V
Sbjct: 337 KIYTFPLEKPEDERT-VETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 21/179 (11%), Positives = 43/179 (24%), Gaps = 12/179 (6%)

Query: 1   MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 60
                +    N    +  F   S  L   S        D         + SK + + L+ 
Sbjct: 168 GRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP 227

Query: 61  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF-----------KGHHDRVVSLSLCSS 109
            + +PT ++  S         L  ++                   +              
Sbjct: 228 GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEF 287

Query: 110 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 168
              +        +L +D +  K   +         + D + ++      G I  F   K
Sbjct: 288 AAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVR-KDDGKIYTFPLEK 345

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.8 bits (99), Expect = 3e-05
 Identities = 21/261 (8%), Positives = 62/261 (23%), Gaps = 26/261 (9%)

Query: 5   MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 64
            +       + +                  + ++        K + +      +    + 
Sbjct: 94  FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA 153

Query: 65  PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 124
               +Y +          + +   KY       +      S       +   S      +
Sbjct: 154 DDGSLYVAGPDI----YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 209

Query: 125 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDIS 184
                         +  PA A    G +      G       +++       F+      
Sbjct: 210 LYT----IARFKDDKQDPATADLLYGYLSVDLKTGKTHT---QEFADLTELYFTGLRSPK 262

Query: 185 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI 244
           D N +    +            +   D  +  L+   N+     ++    +F  +G  + 
Sbjct: 263 DPNQIYGVLN-----------RLAKYDLKQRKLIKAANLD----HTYYCVAFDKKGDKLY 307

Query: 245 SGSGDGSVYAWSVRSGKEVAS 265
            G     +  ++  + ++V +
Sbjct: 308 LGGTFNDLAVFNPDTLEKVKN 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 24/286 (8%), Positives = 59/286 (20%), Gaps = 21/286 (7%)

Query: 19  FHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWD 77
                 Y++  +   ++ + DV + T  K+     K+G           T      N   
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVL--NNHY 61

Query: 78  ESLRLLSLHDNKYLRYF------KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK 131
             +  + L   K   +             + S ++        +       L        
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND--HYVV 119

Query: 132 CQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF 191
               L V              F +    Y+                      +    V  
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVAL 179

Query: 192 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS 251
                     +    ++           +               F  +     +      
Sbjct: 180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA--------RFKDDKQDPATADLLYG 231

Query: 252 VYAWSVRSGKEVASWMSFDTE--PPVIKWTPGSLMFVTGSSELSFW 295
             +  +++GK      +  TE     ++            + L+ +
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKY 277

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 3/91 (3%)

Query: 189 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV-ISGS 247
                    M++T    ++HV+D    T+  +  +       T     +P+     +  +
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTA--MMAPDNRTAYVLNN 59

Query: 248 GDGSVYAWSVRSGKEVASWMSFDTEPPVIKW 278
             G +Y   + + K             V + 
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRS 90

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (97), Expect = 3e-05
 Identities = 33/286 (11%), Positives = 81/286 (28%), Gaps = 17/286 (5%)

Query: 6   SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 65
           +   +N  I+++  +     L++ S D  I  +  ++     +         +V   +  
Sbjct: 8   TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNL-------IVSLDNSK 56

Query: 66  TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW 125
                S        +  ++ H+          ++   +  L +  D  I  S    ++  
Sbjct: 57  AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS 116

Query: 126 DQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD 185
            +       +   Q   A   ++   +           FD +   +      S+    + 
Sbjct: 117 VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 176

Query: 186 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 245
                      L  L + E              S  N                E   V +
Sbjct: 177 IAAGDVMGKILLYDLQSREVKTSRWAFRT----SKINAISWKPAEKGANEEEIEEDLVAT 232

Query: 246 GSGDGSVYAWSVRSGKEVASWMSFDTEPPV-IKWTPGSLMFVTGSS 290
           GS D +++ +SV+   ++   ++   +    + W   S   V+  +
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGA 277

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (87), Expect = 6e-04
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 75  GWDESLRLLSLHDN-KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 126
             D ++ + S+    K ++    H D V +L    +    +S   D  +  W+
Sbjct: 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL-WETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.1 bits (81), Expect = 0.003
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 87  DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 126
            ++ L+   GH+  + +L++       ISGS D  ++ W 
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWS 37

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 24/291 (8%), Positives = 59/291 (20%), Gaps = 37/291 (12%)

Query: 9   DYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDL-----VCFT 62
           D                   T +  ES+   D+     L  I+       +        +
Sbjct: 31  DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS 90

Query: 63  SHPTTVIYSSKNGWDESLRLLSLHDNKY--------LRYFKGHHDRVVSLSLCSSKDCFI 114
               T+         E                     R       ++  L+         
Sbjct: 91  PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY 150

Query: 115 SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDA-------- 166
               D  V+  +         ++       A  D   V+       +             
Sbjct: 151 GLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID 210

Query: 167 -RKYEKGPFDIFSVGGDISDANVVKFSNDGRLM----------LLTTMEGHIHVLDSFRG 215
                     + ++  +  +  + +                          +   D  + 
Sbjct: 211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN 270

Query: 216 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW 266
             +    +     +S    + S +G  V  G   G + A+   + ++    
Sbjct: 271 ASIKRVPLP----HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 21/253 (8%), Positives = 55/253 (21%), Gaps = 13/253 (5%)

Query: 25  YLVTASDDESIRLYDVTAATCLKTINSKKYG--VDLVCFTSHPTTVIYSSKNGWDESLRL 82
           Y++  +  + + + D       K I     G    +            +      ESL  
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYAT--VNKSESLVK 60

Query: 83  LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 142
           + L   + L                       + S D   L   +   + +         
Sbjct: 61  IDLVTGETLGRIDLSTPEE-----RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115

Query: 143 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT 202
             A  D   +         R      + +    ++ +G D+   +    +      + + 
Sbjct: 116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSW 175

Query: 203 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE 262
                   D          +    +   T       +       +    +    + +G+ 
Sbjct: 176 EAETYAQPDVLAVWNQHESSGVMATPFYT----ARKDIDPADPTAYRTGLLTMDLETGEM 231

Query: 263 VASWMSFDTEPPV 275
               +        
Sbjct: 232 AMREVRIMDVFYF 244

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 13/148 (8%), Positives = 30/148 (20%), Gaps = 10/148 (6%)

Query: 10  YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 69
                      K        +    +   D+                      +   T  
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255

Query: 70  YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 129
           +         L    L  N  ++          S+++ +       G     +  +D   
Sbjct: 256 FG----AYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310

Query: 130 EKCQGLLRVQGRPAAAYDDQGLVFAVAF 157
            + +G + + G          L     F
Sbjct: 311 LEKKGQVDLPGNA-----SMSLASVRLF 333

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 30/307 (9%), Positives = 75/307 (24%), Gaps = 22/307 (7%)

Query: 11  NGRISSMDFHKSSSYLVTAS-DDESIRLYDVTAATCLKTI---NSKKYGVDLVCFTSHPT 66
               + + +  +++ +         +R  D   +     +         V  V F+    
Sbjct: 17  RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76

Query: 67  TVIYSS-------KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS--KDCFISGS 117
           +    S               +  +  +      F+     +  +S      + C +   
Sbjct: 77  SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136

Query: 118 LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF 177
            D   +     +    G +    +   A   +      +                     
Sbjct: 137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA 196

Query: 178 SVGGDISDAN----VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 233
           S        +    V    + G  ++    +  I   D   G  L             + 
Sbjct: 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256

Query: 234 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT---PGSLMFVTGSS 290
           A    +     +   D ++  W V + K V  W     +    +      G+   ++ S 
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 291 E--LSFW 295
           +  L+F+
Sbjct: 317 DGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 17  MDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKN 74
                 S    T   D +IR++DVT + C++      ++ G   V   +     I S   
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL-- 314

Query: 75  GWDESLRLLSL 85
             D +L    L
Sbjct: 315 SLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 75  GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLC---SSKDCFISGSLDRTVLLWD 126
           G D ++R+  +  +K ++ +     ++ +  +    +     IS SLD T+  ++
Sbjct: 270 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 22/262 (8%), Positives = 61/262 (23%), Gaps = 16/262 (6%)

Query: 12  GRISSMDFH--KSSSYLVTASDDESIRLYDVTAATCLKTINSKKYG--------VDLVCF 61
             ++++ F   K S YL +  +   + ++  T      ++              +  + +
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 62  TSHPTTVIYSSKNG------WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 115
                 +    +                    + + +     H +        +     S
Sbjct: 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS 183

Query: 116 GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD 175
               +        +++         R      D G                 K  +    
Sbjct: 184 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 243

Query: 176 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 235
           I      +          D +       +  I V D      +  + +      +     
Sbjct: 244 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 303

Query: 236 FSPEGMFVISGSGDGSVYAWSV 257
            +     +IS S DG++  + +
Sbjct: 304 VATGNGRIISLSLDGTLNFYEL 325

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 32/257 (12%), Positives = 69/257 (26%), Gaps = 10/257 (3%)

Query: 12  GRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY 70
                       + + V  +    + + D         I +   G         P     
Sbjct: 32  SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---IATVPAGSSPQGVAVSPDGKQV 88

Query: 71  SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 130
              N    +L ++    N      K     +        K  +++ + D+TV + +   +
Sbjct: 89  YVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK 148

Query: 131 KCQGLLRVQGRP-AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV 189
                + V   P   A    G    VA    + +           D   V    S   V 
Sbjct: 149 AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVN 208

Query: 190 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV-ISGSG 248
                  +  +      + ++D+    + +   V P         + +P+G  V ++ S 
Sbjct: 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAG----IAVTPDGKKVYVALSF 264

Query: 249 DGSVYAWSVRSGKEVAS 265
             +V      +    A+
Sbjct: 265 CNTVSVIDTATNTITAT 281

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 28/258 (10%), Positives = 73/258 (28%), Gaps = 25/258 (9%)

Query: 25  YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 84
           + VT  D   I L D  +   +K I++  Y V +   ++    ++   ++   + + L +
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMSASGRYLLVIGRDARIDMIDLWA 92

Query: 85  LHDN--KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR 141
                   ++          S       +             + D    + + ++  +G 
Sbjct: 93  KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

Query: 142 P---------------AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA 186
                            A+++    +  V   G + + + +  +            ++D 
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLAD- 211

Query: 187 NVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFV-- 243
               + +  R  +      +   +   +   L +  +V              P+   V  
Sbjct: 212 --GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS 269

Query: 244 ISGSGDGSVYAWSVRSGK 261
            S  GDGS+         
Sbjct: 270 TSHLGDGSISLIGTDPKN 287

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	309
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.9
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.85
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.58
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.54
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.44
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.28
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.25
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.24
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.24
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.21
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.2
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.19
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.06
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.88
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.86
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.8
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.77
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.76
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.66
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.49
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.48
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.34
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.26
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.19
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.19
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.07
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.79
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.59
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.13
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.99
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.78
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.71
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.68
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.57
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.56
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.31
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.96
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.78
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.42
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.32
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.18
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.54
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.29
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.09
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.24
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	88.17
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	88.15
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	87.71
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	87.09
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	86.17
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.74
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	83.67

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-43  Score=298.67  Aligned_cols=285  Identities=18%  Similarity=0.285  Sum_probs=244.7

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      ..+|+||+++|++|+|+|++++|||||.|++|+|||+.++++++++.+|...|..+++++++..++.+..   +..+..|
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~---~~~~~~~   86 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA---DMTIKLW   86 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET---TSCCCEE
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccc---ccccccc
Confidence            4579999999999999999999999999999999999999999999999999999999999998887764   7789999


Q ss_pred             EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEE-EECCE
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAV-AFGGY  160 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~  160 (309)
                      +....+....+.+|...+.++.++++++.+++++.|+.+++||+++++....+....  .....+.+++.++++ +.|+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  166 (317)
T d1vyhc1          87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  166 (317)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCe
Confidence            999988888899999999999999999999999999999999999888776665433  234566676665554 56899


Q ss_pred             EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC--------------------CCEEEEEeCCCcEEEEECCCCeEeEE
Q 021648          161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSND--------------------GRLMLLTTMEGHIHVLDSFRGTLLST  220 (309)
Q Consensus       161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d--------------------g~~l~~~~~dg~v~i~d~~~~~~~~~  220 (309)
                      |++|+++...    ....+.++...+..++++|+                    +.++++++.|+.|++||..++.++.+
T Consensus       167 v~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  242 (317)
T d1vyhc1         167 VRVWVVATKE----CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT  242 (317)
T ss_dssp             EEEEETTTCC----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEeeccce----eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE
Confidence            9999987643    23344445555666666554                    45789999999999999999999887


Q ss_pred             eeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeec
Q 021648          221 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD  298 (309)
Q Consensus       221 ~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~  298 (309)
                      +..   |...+..++|+|++++|++|+.||.|++||+.+++.+.++.+|...|++++|+|++++|++|+.|..+.+||
T Consensus       243 ~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         243 LVG---HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEC---CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EeC---CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            763   557788999999999999999999999999999999999999999999999999999999999986555553

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-42  Score=305.88  Aligned_cols=290  Identities=20%  Similarity=0.334  Sum_probs=229.9

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec------------------cccceeEEEEecCCCEEEE
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS------------------KKYGVDLVCFTSHPTTVIY   70 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~~~   70 (309)
                      +|+++|++++|+|||++||||+ |++|+|||+.+++++..+..                  |...|.+++|+|+++.+++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            6999999999999999999987 89999999999988776543                  3445889999999999998


Q ss_pred             EcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc-eeEEE-CC
Q 021648           71 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAY-DD  148 (309)
Q Consensus        71 ~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~-~~  148 (309)
                      ++.   |+.|++||...++.+..+.+|...|.++.+++++..+++++.|+.+++||.++............ ....+ ..
T Consensus       139 ~~~---dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  215 (388)
T d1erja_         139 GAE---DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG  215 (388)
T ss_dssp             EET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred             ccc---ccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCC
Confidence            865   88999999999999999999999999999999999999999999999999988776655443332 22233 34


Q ss_pred             CCcEEE-EEECCEEEEEECCCCCcCC---ceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee--
Q 021648          149 QGLVFA-VAFGGYIRMFDARKYEKGP---FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN--  222 (309)
Q Consensus       149 ~~~~~~-~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~--  222 (309)
                      ++.+++ ++.|+.|++||.+......   .......++...+.+++|+|++++|++++.||.|++||+.++.......  
T Consensus       216 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  295 (388)
T d1erja_         216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  295 (388)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence            555554 5568999999987643210   0111223456789999999999999999999999999987654432211  


Q ss_pred             -------ecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEE------ECCCeeEEEEcc
Q 021648          223 -------VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK------WTPGSLMFVTGS  289 (309)
Q Consensus       223 -------~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~------~~p~~~~l~s~~  289 (309)
                             ....+...+.+++|+|+|++|++|+.||.|++||+.+++++.++.+|...|.+++      |+|++++|++|+
T Consensus       296 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s  375 (388)
T d1erja_         296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS  375 (388)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             cccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence                   1123456788999999999999999999999999999999999999999999887      578999999999


Q ss_pred             ceEEEeeecCCCc
Q 021648          290 SELSFWIPDLSKL  302 (309)
Q Consensus       290 ~d~~~~~~~~~~~  302 (309)
                      .|.++.+|++++|
T Consensus       376 ~Dg~I~iW~~~k~  388 (388)
T d1erja_         376 GDCKARIWKYKKI  388 (388)
T ss_dssp             TTSEEEEEEEEEC
T ss_pred             CCCEEEEEeeeeC
Confidence            9977777776554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-41  Score=295.26  Aligned_cols=276  Identities=11%  Similarity=0.163  Sum_probs=226.4

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeee-----eeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-----INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      +|..+|.+++|+|+|++||||+ |++|+|||+.++.....     ...|...|.+++|+|+++.+++++.   |++|++|
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~---dg~i~iw  124 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE---ASTLSIW  124 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES---SSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeec---ccccccc
Confidence            7999999999999999999997 89999999986654332     3467778999999999999988764   8899999


Q ss_pred             EccCC--ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEE-EEEC
Q 021648           84 SLHDN--KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFA-VAFG  158 (309)
Q Consensus        84 d~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~  158 (309)
                      |+...  +....+.+|...+..+.|+|++..+++++.|+.+++||++++++........  .....+.+.+..++ ++.+
T Consensus       125 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d  204 (337)
T d1gxra_         125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            98754  4567788999999999999999999999999999999999887765544322  23455666665444 5568


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  238 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp  238 (309)
                      +.+++||++..+  ....+   .+...+.+++++|+++++++++.|+.+++||..++......    .+...+..++|+|
T Consensus       205 ~~v~i~d~~~~~--~~~~~---~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~i~~v~~s~  275 (337)
T d1gxra_         205 NTVRSWDLREGR--QLQQH---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH----LHESCVLSLKFAY  275 (337)
T ss_dssp             SEEEEEETTTTE--EEEEE---ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC----CCSSCEEEEEECT
T ss_pred             ccccccccccce--eeccc---ccccceEEEEEcccccccceecccccccccccccccccccc----ccccccceEEECC
Confidence            999999987643  12222   24467899999999999999999999999999888765432    3567788999999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeec
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD  298 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~  298 (309)
                      +|++|++++.|+.|++||+.+++.+..+ .|...|.+++|+|++++|++|+.|.++.+|+
T Consensus       276 ~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         276 CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            9999999999999999999999988776 4778999999999999999999884444444

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-41  Score=290.00  Aligned_cols=287  Identities=17%  Similarity=0.204  Sum_probs=236.6

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ++.++|+||+++|++++|+|++++|||||.||+|+|||+.++++++.+..|..+|..++|+|++..+++++.   |+.++
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~---d~~i~  122 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL---DNICS  122 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEET---TCCEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecc---cceee
Confidence            456889999999999999999999999999999999999999999999999999999999999999988865   88999


Q ss_pred             EEEccCC----ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCc-EEE
Q 021648           82 LLSLHDN----KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGL-VFA  154 (309)
Q Consensus        82 ~~d~~~~----~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~  154 (309)
                      +|+....    .....+.+|........... +..+.....|.....|+..............  .......+... +++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccceeccccccccccccccc-ccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            9997653    34566778888777665554 4577888889999999877665444333222  22234444444 455


Q ss_pred             EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648          155 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  234 (309)
Q Consensus       155 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
                      +..++.|++||++..+    ....+.++...+.+++|+|+++++++++.||.|++||......+..+... .+...+..+
T Consensus       202 ~~~d~~v~i~d~~~~~----~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~-~~~~~i~~~  276 (340)
T d1tbga_         202 GACDASAKLWDVREGM----CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD-NIICGITSV  276 (340)
T ss_dssp             EETTTEEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-TCCSCEEEE
T ss_pred             eecCceEEEEECCCCc----EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccc-cccCceEEE
Confidence            5568999999987643    34556677788999999999999999999999999999988887766433 344568889


Q ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648          235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP  297 (309)
Q Consensus       235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~  297 (309)
                      +|+|++++|++|+.||.|++||+.+++.+.++.+|.+.|++++|+|++++|++|+.|..+.+|
T Consensus       277 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            999999999999999999999999999999999999999999999999999999998444444

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.3e-41  Score=287.44  Aligned_cols=253  Identities=19%  Similarity=0.240  Sum_probs=211.0

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee--eeeeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      ++.+.|.+|.+.|++++|+|+|++||||+.|++|+|||+.++++.  ..+..|..+|..++|+++++.+++++. +.+..
T Consensus        49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~-~~~~~  127 (311)
T d1nr0a1          49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGE-GRERF  127 (311)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEEC-CSSCS
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccc-ccccc
Confidence            456788999999999999999999999999999999999987654  557788889999999999998888764 44778


Q ss_pred             eEEEEccCCceEEEeeecccCEEEEEecCCCCe-EEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEEC
Q 021648           80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  158 (309)
Q Consensus        80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (309)
                      +++|++++++....+.+|.+.|++++|+|++++ |++|+.|++|++||+++.++...+                      
T Consensus       128 ~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~----------------------  185 (311)
T d1nr0a1         128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF----------------------  185 (311)
T ss_dssp             EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE----------------------
T ss_pred             ccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccc----------------------
Confidence            999999999999999999999999999999874 889999999999998876543221                      


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeec----CCCCCccceE
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----PVSRNSTLEA  234 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----~~~~~~~~~~  234 (309)
                                           ..+...+.+++++|+++++++++.|+.|++||..++.....+...    ..|...|.++
T Consensus       186 ---------------------~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~  244 (311)
T d1nr0a1         186 ---------------------GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL  244 (311)
T ss_dssp             ---------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred             ---------------------ccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                 123346788999999999999999999999999998888776532    2245678899


Q ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCC-CCcEEEECCCeeEEEEccce--EEEeeec
Q 021648          235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT-EPPVIKWTPGSLMFVTGSSE--LSFWIPD  298 (309)
Q Consensus       235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~s~~~d--~~~~~~~  298 (309)
                      +|+|+|++|++|+.||+|+|||+.+++.+.++..|.. ....+.+.+++..|++++.|  +++|.+|
T Consensus       245 ~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            9999999999999999999999999999998877654 23344555555667777766  6777664

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.2e-40  Score=279.36  Aligned_cols=288  Identities=12%  Similarity=0.116  Sum_probs=217.7

Q ss_pred             CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648            1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      +++.+++.||+++|++++|+|++++|+|||.|++|++||+.++++++.+. .|...|..++|+|++..++.+.    |+.
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~----d~~   77 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW----DDH   77 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET----TTE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccc----eee
Confidence            46789999999999999999999999999999999999999999998885 6788899999999987554432    889


Q ss_pred             eEEEEccCCc---eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEE-
Q 021648           80 LRLLSLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV-  155 (309)
Q Consensus        80 i~~~d~~~~~---~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  155 (309)
                      +++|+.....   .......|...+.+++++++++.+++++ ++.+++|+....  .............+.+++.++++ 
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL--TEVPISYNSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE--EEEECSSCEEEEEECTTSCEEEEE
T ss_pred             EEEeccCCccccccccccccccccccccccccccccccccc-cccccccccccc--cccccccccccccccccccccccc
Confidence            9999986543   2233456888999999999998777665 678999985432  22222222344566777766655 


Q ss_pred             EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648          156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  235 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  235 (309)
                      +.++.|++||++..+..   ......+...+.+++++|+++++++++.|+.|++||..++...........|...+.+++
T Consensus       155 ~~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~  231 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVS---EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS  231 (299)
T ss_dssp             ETTSEEEEEEEETTEEE---EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred             ccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46899999998754321   112223556799999999999999999999999999987765544333334667888999


Q ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCceEE--EeecCC-CCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          236 FSPEGMFVISGSGDGSVYAWSVRSGKEVA--SWMSFD-TEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       236 ~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~--~~~~~~-~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                      |+|++++|++|+.|+.|++||+.+++...  ....|. ..+.+++ +|++++|++++.|..+.+|++
T Consensus       232 ~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEEEEC
T ss_pred             ccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEEEec
Confidence            99999999999999999999998865433  223344 3455555 566778999998854444443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-37  Score=262.56  Aligned_cols=284  Identities=18%  Similarity=0.298  Sum_probs=208.3

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +..++|+||++.|.+ +++++|++|||||.|++|+|||+.++++++++.+|...|..++|+++  .+++++.   |++++
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~---D~~~~   80 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGST---DRTLK   80 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEET---TSCEE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--cccccee---ccccc
Confidence            567889999999865 46667899999999999999999999999999999999999999764  6776654   77888


Q ss_pred             EEEccCCceEEEeeecccCEEEE--------------------------------------EecCCCCeEEEecCCCcEE
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSL--------------------------------------SLCSSKDCFISGSLDRTVL  123 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v--------------------------------------~~~~~~~~l~s~s~Dg~v~  123 (309)
                      +|+............+...+...                                      ...+....+++++.|+.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK  160 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred             ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence            88876655433333222222221                                      1223344667777788888


Q ss_pred             EeeCCCceeeeeeeecCceeEEEC-CCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe
Q 021648          124 LWDQRAEKCQGLLRVQGRPAAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT  202 (309)
Q Consensus       124 ~Wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~  202 (309)
                      +||.+..++...+........... +...+++++.|+.|++||++..+    .+....++...+.++  +++++++++++
T Consensus       161 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~----~~~~~~~~~~~v~~~--~~~~~~l~s~s  234 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN----CIHTLTGHQSLTSGM--ELKDNILVSGN  234 (342)
T ss_dssp             EEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC----EEEEECCCCSCEEEE--EEETTEEEEEE
T ss_pred             EeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccce----eeeEecccccceeEE--ecCCCEEEEEc
Confidence            888776666554433322222222 33456666679999999987643    234455555555554  45567999999


Q ss_pred             CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee-----cCCCCCcEEE
Q 021648          203 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM-----SFDTEPPVIK  277 (309)
Q Consensus       203 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~-----~~~~~v~~l~  277 (309)
                      .|+.|++||....+....+.....+...+..+.+  +++++++|+.||+|++||+++++.+.++.     +|.+.|++++
T Consensus       235 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~  312 (342)
T d2ovrb2         235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR  312 (342)
T ss_dssp             TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred             CCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEE
Confidence            9999999999988877776654444455554444  56799999999999999999999988774     5777899999


Q ss_pred             ECCCeeEEEEccce----EEEeeecC
Q 021648          278 WTPGSLMFVTGSSE----LSFWIPDL  299 (309)
Q Consensus       278 ~~p~~~~l~s~~~d----~~~~~~~~  299 (309)
                      |+|+++++++|+.|    .++|.||.
T Consensus       313 ~s~~~~~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         313 ASNTKLVCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             ECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence            99999999998865    46777765

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-37  Score=273.89  Aligned_cols=244  Identities=12%  Similarity=0.113  Sum_probs=202.6

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      ..+|++++|+|||++||+|+.|++|+|||..+++  ++..+.+|..+|..++|+|+++++++++.   |++|++||+.++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~---D~~i~vWd~~~~   83 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT---DRNAYVWTLKGR   83 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET---TSCEEEEEEETT
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC---CCeEEEEeeccc
Confidence            4789999999999999999999999999998764  67888999999999999999999988764   889999999877


Q ss_pred             ce--EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEEC
Q 021648           89 KY--LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDA  166 (309)
Q Consensus        89 ~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  166 (309)
                      +.  ...+.+|...|.+++|+|+++.|++++.|+++++|+++.........                             
T Consensus        84 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~-----------------------------  134 (371)
T d1k8kc_          84 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK-----------------------------  134 (371)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-----------------------------
T ss_pred             ccccccccccccccccccccccccccceeecccCcceeeeeeccccccccc-----------------------------
Confidence            64  44567899999999999999999999999999999875442211100                             


Q ss_pred             CCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe------------------EeEEeeecCCCC
Q 021648          167 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT------------------LLSTYNVKPVSR  228 (309)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~------------------~~~~~~~~~~~~  228 (309)
                                .....+...+.+++|+|++++|++++.|++|++||.....                  ++...   ..+.
T Consensus       135 ----------~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  201 (371)
T d1k8kc_         135 ----------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES---SSSC  201 (371)
T ss_dssp             ----------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC---CCCS
T ss_pred             ----------ccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeec---cCcc
Confidence                      0112244567889999999999999999999999975432                  22211   2355


Q ss_pred             CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce-EEEeeecC
Q 021648          229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE-LSFWIPDL  299 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d-~~~~~~~~  299 (309)
                      ..+..++|+|+|++|++++.|++|++||+.+++.+.++..|..+|.+++|+|++++|++|+.+ ..+|.++.
T Consensus       202 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~  273 (371)
T d1k8kc_         202 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  273 (371)
T ss_dssp             SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             CcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeC
Confidence            678889999999999999999999999999999999999999999999999999999988754 56776644

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-36  Score=260.56  Aligned_cols=239  Identities=17%  Similarity=0.284  Sum_probs=205.6

Q ss_pred             ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC--CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      ..+|++.|.+++|+|++++|++|+.|++|++||+..  ++....+..|...+..+++++++..+++++.   |+.+++||
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~~~~  169 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS---DGNIAVWD  169 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET---TSCEEEEE
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccc---cccccccc
Confidence            458999999999999999999999999999999874  4556777888888999999999998888764   78999999


Q ss_pred             ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEEE-EECCEEE
Q 021648           85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAV-AFGGYIR  162 (309)
Q Consensus        85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~i~  162 (309)
                      +.+++......+|...|.+++|+++++.+++++.|+.+++||+++++....+..... ..+.+.+.+..+++ +.++.++
T Consensus       170 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~  249 (337)
T d1gxra_         170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE  249 (337)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccc
Confidence            999999999999999999999999999999999999999999999887766654432 34566777665554 5689999


Q ss_pred             EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE
Q 021648          163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  242 (309)
Q Consensus       163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  242 (309)
                      +||++..+     ......+...+.+++|+|+|++|++++.||.|++||..+++.+..+.    +...+.+++|+|++++
T Consensus       250 i~d~~~~~-----~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~s~d~~~  320 (337)
T d1gxra_         250 VLHVNKPD-----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVDDKY  320 (337)
T ss_dssp             EEETTSSC-----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSCE
T ss_pred             cccccccc-----cccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc----CCCCEEEEEEeCCCCE
Confidence            99987543     23445667789999999999999999999999999999998887654    4567889999999999


Q ss_pred             EEEEcCCCcEEEEEC
Q 021648          243 VISGSGDGSVYAWSV  257 (309)
Q Consensus       243 l~s~s~Dg~i~vwd~  257 (309)
                      |++|+.||+|+|||+
T Consensus       321 l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         321 IVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEETTSCEEEEEE
T ss_pred             EEEEeCCCeEEEEEE
Confidence            999999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-36  Score=257.57  Aligned_cols=286  Identities=14%  Similarity=0.122  Sum_probs=207.8

Q ss_pred             CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeee---eeccccceeEEEEecCCCE-EEEEcCCCC
Q 021648            1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT---INSKKYGVDLVCFTSHPTT-VIYSSKNGW   76 (309)
Q Consensus         1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~-~~~~s~~g~   76 (309)
                      ||++...++|++.|++|+|+|++++|||||.|++|||||++++.+...   ...|..+|.+++|++++.. +++++   .
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~---~   77 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT---V   77 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE---T
T ss_pred             CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcc---c
Confidence            788999999999999999999999999999999999999976654333   3368889999999997664 55544   3


Q ss_pred             CceeEEEEccCCceEEEeeecccCE-EEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee--c------CceeEEE-
Q 021648           77 DESLRLLSLHDNKYLRYFKGHHDRV-VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--Q------GRPAAAY-  146 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~--~------~~~~~~~-  146 (309)
                      |++|++|++..+........+.... ....+.++...+++++.|+++++||++..........  .      ....... 
T Consensus        78 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             ccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence            8999999999887777666555443 4455567788999999999999999865433222111  0      0111222 


Q ss_pred             CCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEE-EccCCCEEEEEeCCCcEEEEECCCCeEe------E
Q 021648          147 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK-FSNDGRLMLLTTMEGHIHVLDSFRGTLL------S  219 (309)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~-~s~dg~~l~~~~~dg~v~i~d~~~~~~~------~  219 (309)
                      .....++.++.++.|++||++.......... .........+.. +++++..+++++.||.+.+|+.......      .
T Consensus       158 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~  236 (342)
T d1yfqa_         158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             ECSSEEEEEESTTEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             ccCCceeeecCCCcEEEEecccCcccceeee-ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccc
Confidence            2344566667799999999886554332222 222223344444 4567889999999999999986543211      1


Q ss_pred             Eeee------cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648          220 TYNV------KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       220 ~~~~------~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      .+..      ...+...+.+++|+|++++||||+.||.|++||+.+++++.++..+. ....++|+|++++|++|++|
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sd  313 (342)
T d1yfqa_         237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSD  313 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEEC
T ss_pred             eeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcC
Confidence            1110      12233456789999999999999999999999999999998886544 56788999999999888876

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.7e-35  Score=251.90  Aligned_cols=239  Identities=12%  Similarity=0.160  Sum_probs=201.7

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      .+.+.+..++++|+|+.|+.++ ++.+.+||+.+++..+.+.+|...|.+++|+|+++++++++.   |++|++||+.++
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~---dg~i~iwd~~~~   90 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV---HGNVRIWDTTQT   90 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEESSST
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEecccc---CceEeeeeeecc
Confidence            4556677889999999999885 678999999999999999999999999999999999988764   889999999887


Q ss_pred             ce--EEEeeecccCEEEEEecCCCCeEEEecC--CCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEE
Q 021648           89 KY--LRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF  164 (309)
Q Consensus        89 ~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~--Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (309)
                      +.  ...+.+|.++|.+++|+|++++|++++.  |+.+++|++++++....+                            
T Consensus        91 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l----------------------------  142 (311)
T d1nr0a1          91 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL----------------------------  142 (311)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC----------------------------
T ss_pred             ccccccccccccCccccccccccccccccccccccccccccccccccccccc----------------------------
Confidence            64  3568899999999999999999999875  466999998766433221                            


Q ss_pred             ECCCCCcCCceEEEeCCCCCCCeEEEEccCCCE-EEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEE
Q 021648          165 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV  243 (309)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~-l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l  243 (309)
                                     .++...+.+++|+|++++ +++++.|+.|++||.++++....+.   .+...+.++.|+|+++++
T Consensus       143 ---------------~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~---~~~~~i~~v~~~p~~~~l  204 (311)
T d1nr0a1         143 ---------------TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG---EHTKFVHSVRYNPDGSLF  204 (311)
T ss_dssp             ---------------CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC---CCSSCEEEEEECTTSSEE
T ss_pred             ---------------cccccccccccccccceeeecccccccccccccccccccccccc---cccccccccccCcccccc
Confidence                           123456788999999985 7889999999999999988777654   356778899999999999


Q ss_pred             EEEcCCCcEEEEECCCCceEEEee-------cCCCCCcEEEECCCeeEEEEccce--EEEeee
Q 021648          244 ISGSGDGSVYAWSVRSGKEVASWM-------SFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  297 (309)
Q Consensus       244 ~s~s~Dg~i~vwd~~~~~~~~~~~-------~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~  297 (309)
                      ++++.|+.|++||+.+++.+..+.       +|++.|++++|+|++++|++|+.|  +++|..
T Consensus       205 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~  267 (311)
T d1nr0a1         205 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV  267 (311)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence            999999999999999988776653       578899999999999999999988  555544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.1e-35  Score=250.79  Aligned_cols=251  Identities=15%  Similarity=0.187  Sum_probs=196.7

Q ss_pred             ceEecCCC-cceEEEEeCC--CCCEEEEeeCCCcEEEEEcCCCceeeee--------eccccceeEEEEecCCCEEEEEc
Q 021648            4 GMSFRDYN-GRISSMDFHK--SSSYLVTASDDESIRLYDVTAATCLKTI--------NSKKYGVDLVCFTSHPTTVIYSS   72 (309)
Q Consensus         4 ~~~~~~h~-~~V~~i~~s~--~~~~l~t~s~D~~v~iWd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~s   72 (309)
                      ..++.+|. ..|++++|+|  ++.+||||+.|++|+|||+..+++...+        ..+..+|..++|+++++.+++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence            45677875 6799999998  5689999999999999999876654433        34556789999999999988776


Q ss_pred             CCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCe-EEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCc
Q 021648           73 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL  151 (309)
Q Consensus        73 ~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~  151 (309)
                      . +.+..+++|+..+++.+..+.+|...|++++|+|++.. +++++.|+.+++||.+..+....+.              
T Consensus       135 ~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~--------------  199 (325)
T d1pgua1         135 E-GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR--------------  199 (325)
T ss_dssp             C-CSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC--------------
T ss_pred             c-cccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecc--------------
Confidence            4 45888999999999999999999999999999998764 7889999999999987654322211              


Q ss_pred             EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCc
Q 021648          152 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  230 (309)
Q Consensus       152 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  230 (309)
                                                ....+...+.+++|+|+ ++++++++.|+.|++||.++++.+..+..+   ...
T Consensus       200 --------------------------~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~---~~~  250 (325)
T d1pgua1         200 --------------------------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD---QEP  250 (325)
T ss_dssp             --------------------------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT---TBC
T ss_pred             --------------------------cccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccc---ccc
Confidence                                      01123345788999997 689999999999999999999988877643   334


Q ss_pred             cceEEEC---CCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCC--cEEEECCCe-eEEEEccceEEEeeec
Q 021648          231 TLEASFS---PEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP--PVIKWTPGS-LMFVTGSSELSFWIPD  298 (309)
Q Consensus       231 ~~~~~~s---p~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v--~~l~~~p~~-~~l~s~~~d~~~~~~~  298 (309)
                      +..+.|+   |||++|++++.|++|+|||+++++.+.++..|...+  ..+++.+.+ ..+++++.|..+.+|+
T Consensus       251 v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         251 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             CCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             cccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence            4444444   789999999999999999999999999887766543  445555443 3678888885555554

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-35  Score=247.33  Aligned_cols=267  Identities=14%  Similarity=0.154  Sum_probs=201.0

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      +++++|+||+++|++++|+|    |+|||.||+|++||+.++.     ..|...|..++++++. .+++++   +|++++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s---~D~~v~   70 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSIS---WDDTLK   70 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEE---TTTEEE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEe---eccccc
Confidence            68899999999999999997    8999999999999987653     4677788888888654 455554   489999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCC-cEEEEEEC-C
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG-LVFAVAFG-G  159 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~  159 (309)
                      +|++...+       +...+..+.+.+++..+++++ ++.+.+|+..+++....+...... ....+.+ .++.++.+ +
T Consensus        71 ~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~  141 (287)
T d1pgua2          71 VNGITKHE-------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLNSPG-SAVSLSQNYVAVGLEEGN  141 (287)
T ss_dssp             ETTEEEEE-------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEECSSCE-EEEEECSSEEEEEETTTS
T ss_pred             cccccccc-------cccceeeeeeccCCceEEEee-cccceeeeccceeeeeecccccee-eeeeccCcceeeeccccc
Confidence            99975432       344677888888887777665 667888988888777666544332 2333333 44444444 5


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      .+++|++.....   .......+...+.+++|+|+|.+|++++.||.|++||..++......  ...|...+.+++|+|+
T Consensus       142 ~v~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~~h~~~v~~~~~~p~  216 (287)
T d1pgua2         142 TIQVFKLSDLEV---SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR--WAFRTSKINAISWKPA  216 (287)
T ss_dssp             CEEEEETTEEEE---EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC--SCCCSSCEEEEEECCC
T ss_pred             eeeeeeccccce---eeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc--ccccccccceeeeccc
Confidence            799999764321   11112234457899999999999999999999999999888765432  2245677888999874


Q ss_pred             ----------CCEEEEEcCCCcEEEEECCC-CceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEee
Q 021648          240 ----------GMFVISGSGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  296 (309)
Q Consensus       240 ----------g~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~  296 (309)
                                +.++++|+.|++|++||+++ .+.+..+.+|...|++++|+|+++ |++++.|  +++|.
T Consensus       217 ~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~  285 (287)
T d1pgua2         217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN  285 (287)
T ss_dssp             C------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             ccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCCeEEEEE
Confidence                      56899999999999999977 456777789999999999999875 7778887  55564

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-34  Score=244.35  Aligned_cols=277  Identities=17%  Similarity=0.327  Sum_probs=206.0

Q ss_pred             eEecCCCcce-EEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            5 MSFRDYNGRI-SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         5 ~~~~~h~~~V-~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      .+|+||.+.| +|++|  ++++||||+.|++|+|||+.++++++++.+|..+|.+++|+++ ..+++++.   |++|++|
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~---D~~i~iw   79 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST---DRTVRVW   79 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEET---TCCEEEE
T ss_pred             EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEec---ccccccc
Confidence            4689999876 56655  5789999999999999999999999999999999999999885 46776654   8999999


Q ss_pred             EccCCceEEEeeeccc--CEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec----------------------
Q 021648           84 SLHDNKYLRYFKGHHD--RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----------------------  139 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~----------------------  139 (309)
                      ++...+.......+..  ......+.++++.+++++.|++|++||+++..........                      
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            9999887766654443  3455667788889999999999999998765443221100                      


Q ss_pred             -CceeEEECCCC-cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 021648          140 -GRPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL  217 (309)
Q Consensus       140 -~~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~  217 (309)
                       ........+.+ .++....++.+++||++..+    ......+....+.++.++|++..+++++.|+.|++||..++..
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  235 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK----CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL  235 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE
T ss_pred             ccccccccccccceeeeecccceeeeeeccccc----ceeeeeccccccccccccccceeeecccccceEEeeecccccc
Confidence             00011122233 34445568999999987543    2344455666788899999999999999999999999999998


Q ss_pred             eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEE-EECCCeeEEEEccce-EEEe
Q 021648          218 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVI-KWTPGSLMFVTGSSE-LSFW  295 (309)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l-~~~p~~~~l~s~~~d-~~~~  295 (309)
                      +..+..   |...+..++|+  +++|++|+.||+|++||+.+....  +..|...+.++ +++|+++++++|+.+ +++|
T Consensus       236 ~~~~~~---h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vw  308 (355)
T d1nexb2         236 MYTLQG---HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSGSENQFNIY  308 (355)
T ss_dssp             EEEECC---CSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEEETTEEEEE
T ss_pred             cccccc---ccccccccccc--cceeeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEEeCCEEEEE
Confidence            887653   55677778876  479999999999999999887654  34555666665 567788888777643 6777


Q ss_pred             eec
Q 021648          296 IPD  298 (309)
Q Consensus       296 ~~~  298 (309)
                      ..+
T Consensus       309 d~~  311 (355)
T d1nexb2         309 NLR  311 (355)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.4e-35  Score=255.73  Aligned_cols=268  Identities=15%  Similarity=0.142  Sum_probs=200.7

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee--eeeeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      +....|++|.++|.+++|+|++++|+|||.|++|+|||+.+++..  ..+..|...+.+++|+|+++.+++++.   |++
T Consensus        42 ~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~---d~~  118 (371)
T d1k8kc_          42 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG---SRV  118 (371)
T ss_dssp             EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET---TSS
T ss_pred             EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecc---cCc
Confidence            356778999999999999999999999999999999999876544  445677788999999999999998874   789


Q ss_pred             eEEEEccCCce----EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEE
Q 021648           80 LRLLSLHDNKY----LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  155 (309)
Q Consensus        80 i~~~d~~~~~~----~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (309)
                      +++|+++....    .....+|.+.|.+++|+|++++|++|+.|+++++||..............               
T Consensus       119 i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~---------------  183 (371)
T d1k8kc_         119 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP---------------  183 (371)
T ss_dssp             EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBT---------------
T ss_pred             ceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccccccccc---------------
Confidence            99999877553    23345789999999999999999999999999999986543221111000               


Q ss_pred             EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648          156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  235 (309)
Q Consensus       156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  235 (309)
                              |+...  ...........+...+.+++|+|+|+.+++++.|+.|++||..++..+..+..   +..++.+++
T Consensus       184 --------~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~s~~  250 (371)
T d1k8kc_         184 --------WGSKM--PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS---ETLPLLAVT  250 (371)
T ss_dssp             --------TBSCC--CTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC---SSCCEEEEE
T ss_pred             --------ccccc--cceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeec---ccccceeee
Confidence                    00000  00011233445666789999999999999999999999999999888887753   456788999


Q ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCceEEEe-----------------------------------------ecCCCCCc
Q 021648          236 FSPEGMFVISGSGDGSVYAWSVRSGKEVASW-----------------------------------------MSFDTEPP  274 (309)
Q Consensus       236 ~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-----------------------------------------~~~~~~v~  274 (309)
                      |+||+++|++|+ |+.+++|..........+                                         ..|...|+
T Consensus       251 fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~  329 (371)
T d1k8kc_         251 FITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS  329 (371)
T ss_dssp             EEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEE
T ss_pred             ecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEE
Confidence            999998888766 676666654332110000                                         12777889


Q ss_pred             EEEECCCe----eEEEEccceEEEeeecCCC
Q 021648          275 VIKWTPGS----LMFVTGSSELSFWIPDLSK  301 (309)
Q Consensus       275 ~l~~~p~~----~~l~s~~~d~~~~~~~~~~  301 (309)
                      ++++.|.+    ..|+|++.|.++.+|++..
T Consensus       330 ~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         330 QISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             EEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             EEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence            99987743    4689999996666666543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-33  Score=237.98  Aligned_cols=245  Identities=19%  Similarity=0.348  Sum_probs=209.7

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ++.++|.+|++.|.+++|+|++.++++++.++++.+|+....+....+..+...+..+.+++++..+++++.   |+.++
T Consensus        50 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~~  126 (317)
T d1vyhc1          50 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR---DKTIK  126 (317)
T ss_dssp             CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET---TSEEE
T ss_pred             CEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeecc---Cccee
Confidence            567889999999999999999999999999999999999988888888888888999999999999888764   88999


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc--eeEEE-------------
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAY-------------  146 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~--~~~~~-------------  146 (309)
                      +||+.+++.+..+.+|...+.+++|++++++|++++.|+.+++|++++++....+.....  ....+             
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  206 (317)
T d1vyhc1         127 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT  206 (317)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred             EeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccc
Confidence            999999999999999999999999999999999999999999999988776554432111  01111             


Q ss_pred             --------CCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe
Q 021648          147 --------DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL  218 (309)
Q Consensus       147 --------~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~  218 (309)
                              .+...+++++.|+.|++||+++.+    .+..+.++...+.+++++|++++|++++.||.|++||+.+++++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  282 (317)
T d1vyhc1         207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM  282 (317)
T ss_dssp             SCC-------CCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC
T ss_pred             cceeeeeccCCceeEeccCCCEEEEEECCCCc----EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEE
Confidence                    122345556678999999987643    34556677788999999999999999999999999999999988


Q ss_pred             EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEE
Q 021648          219 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS  256 (309)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd  256 (309)
                      .++..   |...|.+++|+|++++|+||+.||+|+|||
T Consensus       283 ~~~~~---h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         283 KTLNA---HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEC---CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEcC---CCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            88763   567889999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-33  Score=243.89  Aligned_cols=245  Identities=16%  Similarity=0.232  Sum_probs=194.3

Q ss_pred             cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648            8 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   87 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~   87 (309)
                      .+|...|.+++|+|++++|++|+.|++|++||..+++.+..+.+|...|..+++++++..++.++.   ++.+++||+.+
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~---~~~i~~~d~~~  194 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG---DRTVRIWDLRT  194 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTT
T ss_pred             cCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccccccccc---ceeeeeeeccc
Confidence            468888999999999999999999999999999999999999999999999999999998888764   78999999999


Q ss_pred             CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec---------CceeEEECCCCcEEE-EEE
Q 021648           88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---------GRPAAAYDDQGLVFA-VAF  157 (309)
Q Consensus        88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-~~~  157 (309)
                      .........+...+....+.+++++|++++.|+.|++||.+++.....+...         ....+.+.+++.+++ ++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  274 (388)
T d1erja_         195 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  274 (388)
T ss_dssp             TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence            8877776655554444444458899999999999999999887765544221         123456777766555 456


Q ss_pred             CCEEEEEECCCCCcCC--------ceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCC
Q 021648          158 GGYIRMFDARKYEKGP--------FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  229 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~--------~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  229 (309)
                      |+.|++||++......        ........+...+.+++++|+|++|++++.||.|++||+.+++++.++..   |..
T Consensus       275 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~---H~~  351 (388)
T d1erja_         275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG---HRN  351 (388)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC---CSS
T ss_pred             CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeC---CCC
Confidence            8999999987543211        11223344567789999999999999999999999999999999988764   456


Q ss_pred             ccceEE------ECCCCCEEEEEcCCCcEEEEECC
Q 021648          230 STLEAS------FSPEGMFVISGSGDGSVYAWSVR  258 (309)
Q Consensus       230 ~~~~~~------~sp~g~~l~s~s~Dg~i~vwd~~  258 (309)
                      .|..++      |+|++++|+|||.||+|+||+++
T Consensus       352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            666665      57899999999999999999984

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-34  Score=252.49  Aligned_cols=292  Identities=13%  Similarity=0.170  Sum_probs=201.7

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceee------eeeccccceeEEE----EecCCCEEEEEcCC
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK------TINSKKYGVDLVC----FTSHPTTVIYSSKN   74 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~------~~~~~~~~v~~~~----~~~~~~~~~~~s~~   74 (309)
                      ...++|++.|.++++++  ++++|||.|++|||||..+.+...      ....+...+..++    ...++......+..
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            34589999999999875  699999999999999986543211      1122222222111    11222211111112


Q ss_pred             CCCceeEEEEccCCceEEEe----------eecccCEEEEEecCC-----CCeEEEecCCCcEEEeeCCCceee------
Q 021648           75 GWDESLRLLSLHDNKYLRYF----------KGHHDRVVSLSLCSS-----KDCFISGSLDRTVLLWDQRAEKCQ------  133 (309)
Q Consensus        75 g~d~~i~~~d~~~~~~~~~~----------~~h~~~v~~v~~~~~-----~~~l~s~s~Dg~v~~Wd~~~~~~~------  133 (309)
                      +.|+.+++|++........+          ..+...++.+++.++     +.++++++.||++++||+......      
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            45899999998654322111          235567888888765     357899999999999997422100      


Q ss_pred             ---------eeeee-----cCceeEEECCCCcEEEEEECCEEEEEECCCCCcCC-ce-EEEeCCCCCCCeEEEEccCCCE
Q 021648          134 ---------GLLRV-----QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGP-FD-IFSVGGDISDANVVKFSNDGRL  197 (309)
Q Consensus       134 ---------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~-~~~~~~~~~~~~~v~~s~dg~~  197 (309)
                               .....     .......+++++.+++++.|+.|++||++..+... +. ...+.+|...|++++|||||++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  245 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL  245 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccce
Confidence                     00000     01224567777766666679999999987643210 00 1234467788999999999999


Q ss_pred             EEEEeCCCc---EEEEECCCCeEeEEeeec----------CCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 021648          198 MLLTTMEGH---IHVLDSFRGTLLSTYNVK----------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA  264 (309)
Q Consensus       198 l~~~~~dg~---v~i~d~~~~~~~~~~~~~----------~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~  264 (309)
                      |++++.|++   |++||+.+++.+..+...          ..|...|.+++|+|||++|+|||.|++|+|||+.+++++.
T Consensus       246 l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~  325 (393)
T d1sq9a_         246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT  325 (393)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             eeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEE
Confidence            999998874   999999999888776421          2466789999999999999999999999999999999999


Q ss_pred             EeecCCCCCc----EEEECCCeeEEEEccceEEEeeec
Q 021648          265 SWMSFDTEPP----VIKWTPGSLMFVTGSSELSFWIPD  298 (309)
Q Consensus       265 ~~~~~~~~v~----~l~~~p~~~~l~s~~~d~~~~~~~  298 (309)
                      ++.+|...|.    .++|+|++..+++++...-.|.+.
T Consensus       326 ~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (393)
T d1sq9a_         326 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK  363 (393)
T ss_dssp             EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred             EECCcCCcccCCccEEEECCCCCEEEEcccceEEECcc
Confidence            9999988775    488999999888776543334443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-32  Score=227.12  Aligned_cols=273  Identities=15%  Similarity=0.245  Sum_probs=204.6

Q ss_pred             ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648            4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   83 (309)
Q Consensus         4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~   83 (309)
                      +..+.+|...|+|++|  |+++|||||.|++|||||+.++++++++.+|...|.+++|  +++.+++++.   |+.+++|
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~---D~~i~~~   80 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS---DSTVRVW   80 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEET---TSCEEEE
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccc---ccccccc
Confidence            3455678889998765  6899999999999999999999999999999998877665  6778887764   8899999


Q ss_pred             EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeee---ecCceeEE-ECCCCcEEEEEECC
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAA-YDDQGLVFAVAFGG  159 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~  159 (309)
                      ++..+........+......  +.+....++++..++.+++||...........   ........ .......++.+.|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~  158 (293)
T d1p22a2          81 DVNTGEMLNTLIHHCEAVLH--LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR  158 (293)
T ss_dssp             ESSSCCEEEEECCCCSCEEE--EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred             cccccccccccccccccccc--ccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCC
Confidence            99998877776665555443  44556789999999999999987655432221   11111222 22334566667799


Q ss_pred             EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648          160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  239 (309)
Q Consensus       160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~  239 (309)
                      .+++||++..+    .+..+.++...+..  +++++..+++++.||.|++||+.+...+..+..   +...+  ..++++
T Consensus       159 ~i~~~d~~~~~----~~~~~~~~~~~v~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v--~~~~~~  227 (293)
T d1p22a2         159 TIKVWNTSTCE----FVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG---HEELV--RCIRFD  227 (293)
T ss_dssp             EEEEEETTTCC----EEEEEECCSSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEEECC---CSSCE--EEEECC
T ss_pred             ceeeecCCCCc----EEEEEccccccccc--ccCCCCeEEEecCCCEEEEEecccceeeeeecc---cceee--eecccc
Confidence            99999987643    23344455444444  455678999999999999999999888776543   22333  357789


Q ss_pred             CCEEEEEcCCCcEEEEECCC---------CceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeec
Q 021648          240 GMFVISGSGDGSVYAWSVRS---------GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD  298 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~~---------~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~  298 (309)
                      +.+|++|+.||.|++||+.+         ...+..+.+|.+.|.+++|+  +++|++++.|..+.+||
T Consensus       228 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            99999999999999999743         34577888999999999995  46799999995555553

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-32  Score=234.46  Aligned_cols=279  Identities=17%  Similarity=0.315  Sum_probs=206.4

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecccc--ceeEEEEecCCCEEEEEcCCCCCce
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY--GVDLVCFTSHPTTVIYSSKNGWDES   79 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~s~~g~d~~   79 (309)
                      +++++|.+|+++|.+++|+|+ .+|+||+.|++|++|+....++.........  ......+.+++..+++++.   |+.
T Consensus        44 ~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~  119 (355)
T d1nexb2          44 KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR---DNT  119 (355)
T ss_dssp             EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEET---TSE
T ss_pred             cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecC---CCc
Confidence            567899999999999999985 5899999999999999998887766554433  3344566677777777764   889


Q ss_pred             eEEEEccCCceE-----------------------EEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeee
Q 021648           80 LRLLSLHDNKYL-----------------------RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL  136 (309)
Q Consensus        80 i~~~d~~~~~~~-----------------------~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~  136 (309)
                      +++||+.++..+                       .....|...+..  +.++++.++++..|+.+++||+++++.....
T Consensus       120 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  197 (355)
T d1nexb2         120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL  197 (355)
T ss_dssp             EEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccc--cccccceeeeecccceeeeeecccccceeee
Confidence            999998765432                       223344455544  3456789999999999999999988776554


Q ss_pred             eecC--ceeEEECCCCc-EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC
Q 021648          137 RVQG--RPAAAYDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  213 (309)
Q Consensus       137 ~~~~--~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~  213 (309)
                      ....  .....+.+.+. +++++.|+.|++||.++..    .+..+.++...+.+++++  ++++++++.||.|++||+.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~  271 (355)
T d1nexb2         198 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAN  271 (355)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC----EEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETT
T ss_pred             eccccccccccccccceeeecccccceEEeeeccccc----cccccccccccccccccc--cceeeeeeccccccccccc
Confidence            3322  22344555554 5555678999999987643    345666777888888876  5799999999999999998


Q ss_pred             CCeEeEEeeecCCCCCccc-eEEECCCCCEEEEEcCCCcEEEEECCCCceEE-EeecCCCCCcEEEECCCeeEEEEccce
Q 021648          214 RGTLLSTYNVKPVSRNSTL-EASFSPEGMFVISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSLMFVTGSSE  291 (309)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~-~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~s~~~d  291 (309)
                      ++.....+.     ...+. ...|+|+++++++|+ |++|++||+++++.+. .+.+|...|.+++|+|+ .++++++.|
T Consensus       272 ~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~d  344 (355)
T d1nexb2         272 DYSRKFSYH-----HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKD  344 (355)
T ss_dssp             TCCEEEEEE-----CTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESS
T ss_pred             ccceecccc-----cCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECC
Confidence            876654432     22233 346778888877765 8999999999999885 46789999999999997 467777777


Q ss_pred             --EEEeeecC
Q 021648          292 --LSFWIPDL  299 (309)
Q Consensus       292 --~~~~~~~~  299 (309)
                        +.+|.++-
T Consensus       345 g~~~l~~~df  354 (355)
T d1nexb2         345 GQSFLEILDF  354 (355)
T ss_dssp             SCEEEEEEEC
T ss_pred             CcEEEEEEeC
Confidence              56788764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.5e-32  Score=230.59  Aligned_cols=241  Identities=15%  Similarity=0.238  Sum_probs=191.8

Q ss_pred             CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe-eecccCEEEEEecCCCCeEEEecCCCc
Q 021648           43 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF-KGHHDRVVSLSLCSSKDCFISGSLDRT  121 (309)
Q Consensus        43 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~s~Dg~  121 (309)
                      |+..+.+.+|..+|.+++|+|+++++++++.   |++|++||+++++.++.+ .+|...|++++|+|+++ +++++.|+.
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~---Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~   77 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADA---EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDH   77 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcC---CCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceee
Confidence            5677899999999999999999999988764   889999999999988887 47899999999999986 566777999


Q ss_pred             EEEeeCCCceeeeee----eec-CceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCC
Q 021648          122 VLLWDQRAEKCQGLL----RVQ-GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR  196 (309)
Q Consensus       122 v~~Wd~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  196 (309)
                      +++|+..........    ... ......+.+++.+++++.++.+++|+.....     ...   ......+++++|+++
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~-----~~~---~~~~~~~~~~s~~~~  149 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT-----EVP---ISYNSSCVALSNDKQ  149 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE-----EEE---CSSCEEEEEECTTSC
T ss_pred             EEEeccCCcccccccccccccccccccccccccccccccccccccccccccccc-----ccc---ccccccccccccccc
Confidence            999997654322111    111 1234566788888888889999999854311     111   123567899999999


Q ss_pred             EEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEE---EeecCCCCC
Q 021648          197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA---SWMSFDTEP  273 (309)
Q Consensus       197 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~---~~~~~~~~v  273 (309)
                      ++++++.||.|++||+.++........  .+...+.+++|+|++++|++++.|+.|++||+.++..+.   .+..|...|
T Consensus       150 ~l~~g~~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v  227 (299)
T d1nr0a2         150 FVAVGGQDSKVHVYKLSGASVSEVKTI--VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV  227 (299)
T ss_dssp             EEEEEETTSEEEEEEEETTEEEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred             ccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999987765543322  345678899999999999999999999999998876543   456788999


Q ss_pred             cEEEECCCeeEEEEccce--EEEeee
Q 021648          274 PVIKWTPGSLMFVTGSSE--LSFWIP  297 (309)
Q Consensus       274 ~~l~~~p~~~~l~s~~~d--~~~~~~  297 (309)
                      .+++|+|++++|++|+.|  +++|..
T Consensus       228 ~~l~~s~~~~~l~sgs~dg~i~iwd~  253 (299)
T d1nr0a2         228 ACVSWSPDNVRLATGSLDNSVIVWNM  253 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ccccccccccceEEEcCCCEEEEEEC
Confidence            999999999999999988  555644

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-30  Score=220.67  Aligned_cols=256  Identities=13%  Similarity=0.214  Sum_probs=201.2

Q ss_pred             CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcE
Q 021648           43 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTV  122 (309)
Q Consensus        43 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v  122 (309)
                      .+..++|.+|..+|.+++|+|++.++++++.   |++|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.+
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~---Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i  121 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQ---DGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEET---TTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEEC---CCceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccccee
Confidence            3566889999999999999999999998864   8999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCceeee----eeeecC-ce-eEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCC
Q 021648          123 LLWDQRAEKCQG----LLRVQG-RP-AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR  196 (309)
Q Consensus       123 ~~Wd~~~~~~~~----~~~~~~-~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  196 (309)
                      ++|+........    .+.... .. .........+.....+.....+......    ...........+....+.+++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  197 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ----QTTTFTGHTGDVMSLSLAPDTR  197 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTE----EEEEEECCSSCEEEEEECTTSS
T ss_pred             ecccccccccccccceeccccccccccccccccccccccccccccccccccccc----ccccccccceeEeeeccccccc
Confidence            999976543221    111111 11 1222233445555567777777765422    1222333445678888999999


Q ss_pred             EEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe--ecCCCCCc
Q 021648          197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW--MSFDTEPP  274 (309)
Q Consensus       197 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~--~~~~~~v~  274 (309)
                      ++++++.|+.|++||+.+++.+.++.   .|...+.+++|+|++++|++|+.|+.|++||+...+.+..+  ..+...+.
T Consensus       198 ~~~~~~~d~~v~i~d~~~~~~~~~~~---~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~  274 (340)
T d1tbga_         198 LFVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT  274 (340)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             eeEEeecCceEEEEECCCCcEEEEEe---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceE
Confidence            99999999999999999999888775   35677889999999999999999999999999988877665  35566789


Q ss_pred             EEEECCCeeEEEEccce--EEEeee-cCCCccccccC
Q 021648          275 VIKWTPGSLMFVTGSSE--LSFWIP-DLSKLGAYVGR  308 (309)
Q Consensus       275 ~l~~~p~~~~l~s~~~d--~~~~~~-~~~~~~~~~~~  308 (309)
                      +++|+|++++|++|+.|  +++|.. ....++.+.||
T Consensus       275 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H  311 (340)
T d1tbga_         275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH  311 (340)
T ss_dssp             EEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCC
Confidence            99999999999999987  666654 44555666665

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.8e-29  Score=217.26  Aligned_cols=239  Identities=11%  Similarity=0.101  Sum_probs=186.0

Q ss_pred             ceEEEEeCCCCCEEEEeeCCC-cEEEEEcCCC--ceeeeeeccc-cceeEEEEecC--CCEEEEEcCCCCCceeEEEEcc
Q 021648           13 RISSMDFHKSSSYLVTASDDE-SIRLYDVTAA--TCLKTINSKK-YGVDLVCFTSH--PTTVIYSSKNGWDESLRLLSLH   86 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~-~v~iWd~~~~--~~~~~~~~~~-~~v~~~~~~~~--~~~~~~~s~~g~d~~i~~~d~~   86 (309)
                      .+++++|+|+++.||.++.+. .++.||....  ..+..+.+|. ..+.+++|+|+  +.++++++.   |++|++||+.
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~---Dg~i~iWd~~   95 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE---SGKVIVWGWT   95 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET---TSEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeC---CCCEEEeeec
Confidence            457889999999999887554 3577776433  4456677764 57999999984  456666653   8899999987


Q ss_pred             CCceE--------EEeeecccCEEEEEecCCCCeEEEec--CCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEE
Q 021648           87 DNKYL--------RYFKGHHDRVVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA  156 (309)
Q Consensus        87 ~~~~~--------~~~~~h~~~v~~v~~~~~~~~l~s~s--~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (309)
                      .++..        ..+..|.++|.+++|+++++++++++  .|+.+++|+.+++++...+                    
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  155 (325)
T d1pgua1          96 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV--------------------  155 (325)
T ss_dssp             EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC--------------------
T ss_pred             CCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceee--------------------
Confidence            65432        23456889999999999999887765  4778999988765543221                    


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCE-EEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  235 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~-l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  235 (309)
                                             .++...+.+++|+|++.+ +++++.|+.+++||....+..........+...+.+++
T Consensus       156 -----------------------~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~  212 (325)
T d1pgua1         156 -----------------------SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  212 (325)
T ss_dssp             -----------------------CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             -----------------------eecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence                                   123456788999999875 67899999999999988877776665555667788999


Q ss_pred             ECCC-CCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEEC---CCeeEEEEccce--EEEeee
Q 021648          236 FSPE-GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT---PGSLMFVTGSSE--LSFWIP  297 (309)
Q Consensus       236 ~sp~-g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~---p~~~~l~s~~~d--~~~~~~  297 (309)
                      |+|+ +.++++++.|+.|++||+++++.+.++.+|...+..+.|+   |++++|++++.|  +++|..
T Consensus       213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~  280 (325)
T d1pgua1         213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV  280 (325)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred             eccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEEC
Confidence            9997 6899999999999999999999999999999888877776   789999999988  555544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.9e-28  Score=206.13  Aligned_cols=247  Identities=15%  Similarity=0.303  Sum_probs=179.0

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecccccee------------------------
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD------------------------   57 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~------------------------   57 (309)
                      +++++|.+|++.|.+++|+|+  +|+||+.|+++++|+............+...+.                        
T Consensus        48 ~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  125 (342)
T d2ovrb2          48 KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE  125 (342)
T ss_dssp             CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESS
T ss_pred             CEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecc
Confidence            577899999999999999974  999999999999999876544332221111110                        


Q ss_pred             --------------EEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEE
Q 021648           58 --------------LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL  123 (309)
Q Consensus        58 --------------~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~  123 (309)
                                    ..........++.++   .|+.+++||+...+.+..+.+|...+..+.+  +++.|++++.||+|+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~  200 (342)
T d2ovrb2         126 TGQCLHVLMGHVAAVRCVQYDGRRVVSGA---YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR  200 (342)
T ss_dssp             SCCEEEEEECCSSCEEEEEECSSCEEEEE---TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred             cccceeeeecccccceeeccccceeeeec---CCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEE
Confidence                          111222333344443   3789999999999999999999888776654  678999999999999


Q ss_pred             EeeCCCceeeeeeeecCceeEEEC-CCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCC-CCCeEEEEccCCCEEEEE
Q 021648          124 LWDQRAEKCQGLLRVQGRPAAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI-SDANVVKFSNDGRLMLLT  201 (309)
Q Consensus       124 ~Wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~v~~s~dg~~l~~~  201 (309)
                      +||++..++...+..+........ .+..+++++.|+.|++||+...+.    ...+..+. ......++++++++++++
T Consensus       201 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~  276 (342)
T d2ovrb2         201 VWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC----LQTLQGPNKHQSAVTCLQFNKNFVITS  276 (342)
T ss_dssp             EEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE----EEEECSTTSCSSCEEEEEECSSEEEEE
T ss_pred             EeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccc----cccccccceeeeceeecccCCCeeEEE
Confidence            999998887766544333222222 234566666789999999876432    12222211 123344556677899999


Q ss_pred             eCCCcEEEEECCCCeEeEEeeec--CCCCCccceEEECCCCCEEEEEcCCCc----EEEEECCC
Q 021648          202 TMEGHIHVLDSFRGTLLSTYNVK--PVSRNSTLEASFSPEGMFVISGSGDGS----VYAWSVRS  259 (309)
Q Consensus       202 ~~dg~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~sp~g~~l~s~s~Dg~----i~vwd~~~  259 (309)
                      +.||+|++||+.+++++.++...  ..+...|.+++|+|+++++|+|+.||+    |++||...
T Consensus       277 s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             cCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            99999999999999998877542  234567889999999999999999996    99999853

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=8.7e-29  Score=213.91  Aligned_cols=274  Identities=12%  Similarity=0.118  Sum_probs=198.8

Q ss_pred             EEEEeCC-CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648           15 SSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY   93 (309)
Q Consensus        15 ~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~   93 (309)
                      .+-.||| ||+++|+++ ++.|.+||+.++..++.  .|...+..++|+|+++.+++++... +..+++||+++++ +..
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~-g~~v~v~d~~~~~-~~~   80 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTRE-GDFLGIYDYRTGK-AEK   80 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETT-EEEEEEEETTTCC-EEE
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCC-CCEEEEEECCCCc-EEE
Confidence            3467999 999999986 57999999998887764  5777899999999999988766421 3579999998876 456


Q ss_pred             eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEEE-----------CCE
Q 021648           94 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAF-----------GGY  160 (309)
Q Consensus        94 ~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------~~~  160 (309)
                      +..|...|.+++|+||+++|++++.|+.+++|+..++++...+....  .....+.+++.+++.+.           ++.
T Consensus        81 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~  160 (360)
T d1k32a3          81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  160 (360)
T ss_dssp             CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             eeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccc
Confidence            77899999999999999999999999999999999888766655432  23467888887776442           246


Q ss_pred             EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe-------EEeeecC--------
Q 021648          161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL-------STYNVKP--------  225 (309)
Q Consensus       161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~-------~~~~~~~--------  225 (309)
                      +++||+...+     ...+..+...+..++++|||+.|++++.++.+++||.......       .....+.        
T Consensus       161 ~~v~d~~~~~-----~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (360)
T d1k32a3         161 IHVYDMEGRK-----IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL  235 (360)
T ss_dssp             EEEEETTTTE-----EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGC
T ss_pred             eeeeccccCc-----eeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceE
Confidence            8999987532     2233334456778899999999999999999999986543221       1110000        


Q ss_pred             -------------------------CCCCccceEEECCC-------------CCEEEEEcCCCcEEEEECCCCceEEEee
Q 021648          226 -------------------------VSRNSTLEASFSPE-------------GMFVISGSGDGSVYAWSVRSGKEVASWM  267 (309)
Q Consensus       226 -------------------------~~~~~~~~~~~sp~-------------g~~l~s~s~Dg~i~vwd~~~~~~~~~~~  267 (309)
                                               ........+...++             +.++++++.++.|++||+.+++. .   
T Consensus       236 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~---  311 (360)
T d1k32a3         236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-T---  311 (360)
T ss_dssp             CCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE-E---
T ss_pred             CCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE-E---
Confidence                                     00001111222222             23456667788999999988653 2   


Q ss_pred             cCCCCCcEEEECCCeeEEEEccceEEEeeecCCCc
Q 021648          268 SFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL  302 (309)
Q Consensus       268 ~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~  302 (309)
                      .|...+.+++|+|||+.|++++.|..+++|++.+.
T Consensus       312 ~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~  346 (360)
T d1k32a3         312 EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP  346 (360)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred             EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence            23456889999999999999999866666655443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.6e-28  Score=213.10  Aligned_cols=255  Identities=12%  Similarity=0.115  Sum_probs=172.8

Q ss_pred             eeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce------EEEeeecccCEEEEEe------cC-CCCeEE
Q 021648           48 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY------LRYFKGHHDRVVSLSL------CS-SKDCFI  114 (309)
Q Consensus        48 ~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~------~~~~~~h~~~v~~v~~------~~-~~~~l~  114 (309)
                      ..++|...|..++++  ++++++++.   |++||+||..+.+.      ......|...+..+..      .+ +...++
T Consensus         9 ~~~~H~~~I~~v~~~--~~~l~S~S~---D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           9 AGKAHDADIFSVSAC--NSFTVSCSG---DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             ESSCSSSCEEEEEEC--SSEEEEEET---TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             cCCcccCccEEEEEe--CCEEEEEEC---CCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            456888889888875  468888764   89999999765431      2223334444333221      11 234688


Q ss_pred             EecCCCcEEEeeCCCceeeeee-----ee-----cC--ceeEEEC--C----CCcEEEEEECCEEEEEECCCCCc-----
Q 021648          115 SGSLDRTVLLWDQRAEKCQGLL-----RV-----QG--RPAAAYD--D----QGLVFAVAFGGYIRMFDARKYEK-----  171 (309)
Q Consensus       115 s~s~Dg~v~~Wd~~~~~~~~~~-----~~-----~~--~~~~~~~--~----~~~~~~~~~~~~i~~~d~~~~~~-----  171 (309)
                      +++.||++++|++........+     ..     ..  .......  .    ...+++++.|+.+++|++.....     
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            9999999999986543221111     00     00  0111111  1    12345566789999999753211     


Q ss_pred             -----CCceE----EEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeec---CCCCCccceEEECCC
Q 021648          172 -----GPFDI----FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK---PVSRNSTLEASFSPE  239 (309)
Q Consensus       172 -----~~~~~----~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~sp~  239 (309)
                           .....    .....+...+.+++|+|+| ++++++.||+|++||+.+++++..+...   ..|..+|.+++|+||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  242 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ  242 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccc
Confidence                 00011    1111223457899999998 7899999999999999999888776532   235678999999999


Q ss_pred             CCEEEEEcCCCc---EEEEECCCCceEEEee-------------cCCCCCcEEEECCCeeEEEEccce--EEEeee-cCC
Q 021648          240 GMFVISGSGDGS---VYAWSVRSGKEVASWM-------------SFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP-DLS  300 (309)
Q Consensus       240 g~~l~s~s~Dg~---i~vwd~~~~~~~~~~~-------------~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~-~~~  300 (309)
                      |++|++|+.|++   |++||+.+++.+.++.             +|...|++|+|+|++++|+|++.|  +++|.. ...
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            999999999975   8999999998877763             799999999999999999999998  555543 334


Q ss_pred             CccccccC
Q 021648          301 KLGAYVGR  308 (309)
Q Consensus       301 ~~~~~~~~  308 (309)
                      .+..+.||
T Consensus       323 ~~~~l~gH  330 (393)
T d1sq9a_         323 RITTLNMH  330 (393)
T ss_dssp             EEEEEECC
T ss_pred             EEEEECCc
Confidence            45555555

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.6e-27  Score=200.09  Aligned_cols=253  Identities=11%  Similarity=0.059  Sum_probs=179.0

Q ss_pred             ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce---EEEeeecccCEEEEEecCC-CCeEEEecCC
Q 021648           44 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSS-KDCFISGSLD  119 (309)
Q Consensus        44 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~---~~~~~~h~~~v~~v~~~~~-~~~l~s~s~D  119 (309)
                      +.++..++|+..|..++|+|+++.+++++.   |++|++||+..+..   +....+|.++|.+++|+|+ +..|++|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~---Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d   78 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSW---DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEET---TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEEC---CCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc
Confidence            456667889999999999999999998874   89999999977653   3334479999999999986 4589999999


Q ss_pred             CcEEEeeCCCceeeeeeeecC---cee-EEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCC--CCCCeEEEEcc
Q 021648          120 RTVLLWDQRAEKCQGLLRVQG---RPA-AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD--ISDANVVKFSN  193 (309)
Q Consensus       120 g~v~~Wd~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~v~~s~  193 (309)
                      ++|++|++.............   ... ........+++.+.++.+++||++...............  ........+.+
T Consensus        79 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (342)
T d1yfqa_          79 GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             cceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec
Confidence            999999988766544432221   111 223345567777789999999987544332222222222  22445677889


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE-CCCCCEEEEEcCCCcEEEEECCCCceE------E--
Q 021648          194 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF-SPEGMFVISGSGDGSVYAWSVRSGKEV------A--  264 (309)
Q Consensus       194 dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-sp~g~~l~s~s~Dg~i~vwd~~~~~~~------~--  264 (309)
                      ++..+++++.|+.|++||+.......................+ ++++..+++++.||.+.+|+.......      .  
T Consensus       159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~  238 (342)
T d1yfqa_         159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence            9999999999999999998776544333222222233344444 457899999999999999998654321      1  


Q ss_pred             -------EeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648          265 -------SWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  299 (309)
Q Consensus       265 -------~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~  299 (309)
                             ....|...+++|+|+|++++|++|+.|..+.+|++
T Consensus       239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~  280 (342)
T d1yfqa_         239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEEC
Confidence                   11345667889999999999999999844444444

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7e-25  Score=182.77  Aligned_cols=233  Identities=17%  Similarity=0.239  Sum_probs=175.3

Q ss_pred             eeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEee
Q 021648           47 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD  126 (309)
Q Consensus        47 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd  126 (309)
                      +....|...|.+  ++++++++++++.   |++|++||++++++++++.+|.+.|++++|  ++++|+||+.|+++++|+
T Consensus         9 ~~~~~~~~~V~c--~~~d~~~l~sgs~---Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~   81 (293)
T d1p22a2           9 HCRSETSKGVYC--LQYDDQKIVSGLR---DNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD   81 (293)
T ss_dssp             ECCCSSCCCEEE--EECCSSEEEEEES---SSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred             eccCCCCCCEEE--EEEcCCEEEEEeC---CCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccc
Confidence            344455556665  5568889888865   899999999999999999999999999886  578999999999999999


Q ss_pred             CCCceeeeeeeecCce-eEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC
Q 021648          127 QRAEKCQGLLRVQGRP-AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG  205 (309)
Q Consensus       127 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg  205 (309)
                      ++.+............ .........++++..++.+++||...... .........+...+..+.  +....+++++.|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~--~~~~~~~~~s~d~  158 (293)
T d1p22a2          82 VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVD--FDDKYIVSASGDR  158 (293)
T ss_dssp             SSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC-CEEEEEECCCSSCEEEEE--EETTEEEEEETTS
T ss_pred             cccccccccccccccccccccccccceeecccccceeEeecccccc-ccccccccccccccccce--ecccccccccCCC
Confidence            9887765544333322 23344555677777889999999876442 222334444545555444  4566788999999


Q ss_pred             cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEE
Q 021648          206 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF  285 (309)
Q Consensus       206 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l  285 (309)
                      .|++||..+++.+..+..   +...+..+  ++++.++++++.|++|++||+++.+.+..+.+|...+.  .+++++..|
T Consensus       159 ~i~~~d~~~~~~~~~~~~---~~~~v~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l  231 (293)
T d1p22a2         159 TIKVWNTSTCEFVRTLNG---HKRGIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRI  231 (293)
T ss_dssp             EEEEEETTTCCEEEEEEC---CSSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--EEECCSSEE
T ss_pred             ceeeecCCCCcEEEEEcc---cccccccc--cCCCCeEEEecCCCEEEEEecccceeeeeecccceeee--eccccceEE
Confidence            999999999998887763   33344444  44678999999999999999999999998888876654  456788899


Q ss_pred             EEccce--EEEee
Q 021648          286 VTGSSE--LSFWI  296 (309)
Q Consensus       286 ~s~~~d--~~~~~  296 (309)
                      ++++.|  +++|.
T Consensus       232 ~sg~~dg~i~iwd  244 (293)
T d1p22a2         232 VSGAYDGKIKVWD  244 (293)
T ss_dssp             EEEETTSCEEEEE
T ss_pred             EEEcCCCEEEEEE
Confidence            999988  55553

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=6.5e-26  Score=195.64  Aligned_cols=252  Identities=10%  Similarity=0.074  Sum_probs=184.4

Q ss_pred             CCCcceEEEEeCCCCCEEEEeeCCC--cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc
Q 021648            9 DYNGRISSMDFHKSSSYLVTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   86 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~t~s~D~--~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~   86 (309)
                      +|.+.|.+++|+|||++|++++.|.  .|++||+.+++.. .+..|...+..++|+|+++++++++.   ++.+++|+++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~---~~~~~~~~~~  115 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVAND---RFEIMTVDLE  115 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEET---TSEEEEEETT
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceecc---cccccccccc
Confidence            6999999999999999998887664  7999999887655 45667778999999999999998764   7899999999


Q ss_pred             CCceEEEeeecccCEEEEEecCCCCeEEEe----------cCCCcEEEeeCCCceeeeeeeecC-ceeEEECCCCcEEE-
Q 021648           87 DNKYLRYFKGHHDRVVSLSLCSSKDCFISG----------SLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFA-  154 (309)
Q Consensus        87 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~----------s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-  154 (309)
                      +++....+..|...+.+++|+||+++|+.+          ..++.+++||+++++......... .....+.+++..++ 
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  195 (360)
T d1k32a3         116 TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY  195 (360)
T ss_dssp             TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             ccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEE
Confidence            999999999999999999999999998854          456679999998877655443332 23456777776555 


Q ss_pred             EEECCEEEEEECCCCCcC---CceE------------------------------------EEeCCCCCCCeEEEEccCC
Q 021648          155 VAFGGYIRMFDARKYEKG---PFDI------------------------------------FSVGGDISDANVVKFSNDG  195 (309)
Q Consensus       155 ~~~~~~i~~~d~~~~~~~---~~~~------------------------------------~~~~~~~~~~~~v~~s~dg  195 (309)
                      ++.++.+++||.......   ....                                    ..+.........+...+++
T Consensus       196 ~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (360)
T d1k32a3         196 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS  275 (360)
T ss_dssp             EESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE
T ss_pred             EeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCC
Confidence            455788888885432100   0000                                    0000001112233333333


Q ss_pred             C-------------EEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 021648          196 R-------------LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  262 (309)
Q Consensus       196 ~-------------~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~  262 (309)
                      .             ++++++.++.+++||+.+++....       ...+..++|||||++|++++.||.|++||+.+++.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-------~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE-------EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             ceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe-------cCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence            2             344556678999999988765321       23466899999999999999999999999999988


Q ss_pred             EEEeecCCC
Q 021648          263 VASWMSFDT  271 (309)
Q Consensus       263 ~~~~~~~~~  271 (309)
                      ..++..+..
T Consensus       349 ~~~~~~d~~  357 (360)
T d1k32a3         349 ERTVETDKR  357 (360)
T ss_dssp             CEECCCCSS
T ss_pred             ceEEEeccc
Confidence            777655443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.1e-26  Score=195.26  Aligned_cols=230  Identities=18%  Similarity=0.222  Sum_probs=173.4

Q ss_pred             CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcE
Q 021648           43 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTV  122 (309)
Q Consensus        43 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v  122 (309)
                      .+.++++.+|..+|.+++|++    +++++.   |++|++||+.++     ..+|...|.++.++++ ..+++++.|+++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~---Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v   69 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSY---DGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTL   69 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEET---TSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEE
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeC---CCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccc
Confidence            467899999999999999976    666654   899999998764     3689999999999875 468999999999


Q ss_pred             EEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe
Q 021648          123 LLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT  202 (309)
Q Consensus       123 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~  202 (309)
                      ++|++...+...     ........+++.++..+.++.+.+|+....+.  ......     .....+++|++..++.++
T Consensus        70 ~~w~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~v~~  137 (287)
T d1pgua2          70 KVNGITKHEFGS-----QPKVASANNDGFTAVLTNDDDLLILQSFTGDI--IKSVRL-----NSPGSAVSLSQNYVAVGL  137 (287)
T ss_dssp             EETTEEEEECSS-----CEEEEEECSSSEEEEEETTSEEEEEETTTCCE--EEEEEC-----SSCEEEEEECSSEEEEEE
T ss_pred             cccccccccccc-----ceeeeeeccCCceEEEeecccceeeeccceee--eeeccc-----cceeeeeeccCcceeeec
Confidence            999975433211     11234556677777788888999998765331  112221     123567889999988888


Q ss_pred             CCC-cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEE-eecCCCCCcEEEECC
Q 021648          203 MEG-HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTP  280 (309)
Q Consensus       203 ~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~~p  280 (309)
                      .++ .|++|+..........  ...+...+.+++|+|+|++|++|+.||.|++||+.+++.... +..|...|.+++|+|
T Consensus       138 ~~~~~v~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p  215 (287)
T d1pgua2         138 EEGNTIQVFKLSDLEVSFDL--KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP  215 (287)
T ss_dssp             TTTSCEEEEETTEEEEEEEC--SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred             cccceeeeeeccccceeeee--eeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecc
Confidence            775 7999998655444332  223456788999999999999999999999999999876553 678999999999998


Q ss_pred             Ce----------eEEEEccceEEEeeecC
Q 021648          281 GS----------LMFVTGSSELSFWIPDL  299 (309)
Q Consensus       281 ~~----------~~l~s~~~d~~~~~~~~  299 (309)
                      ++          .+|++|+.|..+.+|++
T Consensus       216 ~~~~~~~~~~~~~~l~sgs~D~~i~iw~~  244 (287)
T d1pgua2         216 AEKGANEEEIEEDLVATGSLDTNIFIYSV  244 (287)
T ss_dssp             CC------CCSCCEEEEEETTSCEEEEES
T ss_pred             cccccccccCCCCeeEeecCCCeEEEEEC
Confidence            54          58999999844444444

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=7.8e-25  Score=194.97  Aligned_cols=290  Identities=9%  Similarity=0.020  Sum_probs=187.5

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeee-----eccccceeEEEEecCCCEEEEEcCCCC
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI-----NSKKYGVDLVCFTSHPTTVIYSSKNGW   76 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~s~~g~   76 (309)
                      +++.+|..|. .+..++|||||++|++++.|++|++||+.++++....     .+|...+...+|+|+++++++++.  .
T Consensus        53 ~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~--~  129 (426)
T d1hzua2          53 KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY--W  129 (426)
T ss_dssp             SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE--E
T ss_pred             cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec--C
Confidence            5678888875 5899999999999999999999999999988765432     244445566778899998876642  3


Q ss_pred             CceeEEEEccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeee-------------eeeecC-c
Q 021648           77 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQG-------------LLRVQG-R  141 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~-------------~~~~~~-~  141 (309)
                      ++.+++||.++++.+..+.+|...+....+.+++. ..+..+.|+...+|.......+.             .+.... .
T Consensus       130 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  209 (426)
T d1hzua2         130 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFL  209 (426)
T ss_dssp             SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSE
T ss_pred             CCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCcc
Confidence            78999999999999888887776665555555554 33445555555544433221111             111111 1


Q ss_pred             eeEEECCCCcEEEEEE--CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEE---EEEeCCCcEEEEECCC--
Q 021648          142 PAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM---LLTTMEGHIHVLDSFR--  214 (309)
Q Consensus       142 ~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l---~~~~~dg~v~i~d~~~--  214 (309)
                      ....+.+++.++.++.  +..+.+++....+.  .................+.+++...   +....|+.+.+|+...  
T Consensus       210 ~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~  287 (426)
T d1hzua2         210 ADGGWDSSHRYFMTAANNSNKVAVIDSKDRRL--SALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN  287 (426)
T ss_dssp             EEEEECTTSCEEEEEETTCSEEEEEETTTTEE--EEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT
T ss_pred             EeeeECCCCcEEEeeeecccceeeeecccccE--EEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc
Confidence            2356677777666654  46788888765331  1122222222223334444433322   2234577777777543  


Q ss_pred             -----CeEeEEeeecCCCCCccceEEECCCCCEEE-------EEcCCCcEEEEECCCCceEEEee---------cCCCCC
Q 021648          215 -----GTLLSTYNVKPVSRNSTLEASFSPEGMFVI-------SGSGDGSVYAWSVRSGKEVASWM---------SFDTEP  273 (309)
Q Consensus       215 -----~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~-------s~s~Dg~i~vwd~~~~~~~~~~~---------~~~~~v  273 (309)
                           ++...++..   |...+..++|+|||++|+       +++.|++|+|||+.+++.+.++.         .|...+
T Consensus       288 ~~~~~~~~~~~l~g---~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv  364 (426)
T d1hzua2         288 HPQYAWKKVAELQG---QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV  364 (426)
T ss_dssp             CTTTBTSEEEEEEC---SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCE
T ss_pred             cccccceEeEEEec---CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccE
Confidence                 345555543   456678899999999999       46678999999999988765542         345567


Q ss_pred             cEEEECCCeeEE-EEc----cce--EEEeeecC
Q 021648          274 PVIKWTPGSLMF-VTG----SSE--LSFWIPDL  299 (309)
Q Consensus       274 ~~l~~~p~~~~l-~s~----~~d--~~~~~~~~  299 (309)
                      .+++|||||+++ +++    +.+  +.+|...-
T Consensus       365 ~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         365 VQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             EEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred             EEEEECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence            889999999855 442    234  55554433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=1e-22  Score=171.16  Aligned_cols=252  Identities=13%  Similarity=0.138  Sum_probs=189.0

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEE-EEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l-~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      |+++++... +.+..++|+|||++| ++++.|++|++||+.++++++++..+.. +..+++++++..++.+...  +..+
T Consensus        23 ~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~   98 (301)
T d1l0qa2          23 KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMA--SSTL   98 (301)
T ss_dssp             EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETT--TTEE
T ss_pred             eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccc--ccee
Confidence            456666643 457899999999987 6777899999999999999999887654 5778999999887766532  7899


Q ss_pred             EEEEccCCceEEEeeecccCEEEEEecCCCCeE-EEecCCCcEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEEEE-E
Q 021648           81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVA-F  157 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~  157 (309)
                      ++|+..+++....+..+ .....+.++|+++.+ +++..|+.+.+|+..+.+....+..... ....+.+++..+..+ .
T Consensus        99 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (301)
T d1l0qa2          99 SVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF  177 (301)
T ss_dssp             EEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET
T ss_pred             eecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecc
Confidence            99999999888777644 567889999999865 5667789999999998887766654433 234556665544444 3


Q ss_pred             -CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC---CCcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648          158 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  233 (309)
Q Consensus       158 -~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~  233 (309)
                       ++.+.+|+......  .....   .......+++++++..++.+..   ++.|++||..+++++..+..    ...+..
T Consensus       178 ~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~----~~~~~~  248 (301)
T d1l0qa2         178 DSMSISVIDTVTNSV--IDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV----GPDPAG  248 (301)
T ss_dssp             TTTEEEEEETTTTEE--EEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC----CSSEEE
T ss_pred             cccccccccccceee--eeccc---ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC----CCCEEE
Confidence             36777777554221  11111   1234567899999998776543   46899999999998877653    234678


Q ss_pred             EEECCCCCEE-EEEcCCCcEEEEECCCCceEEEee
Q 021648          234 ASFSPEGMFV-ISGSGDGSVYAWSVRSGKEVASWM  267 (309)
Q Consensus       234 ~~~sp~g~~l-~s~s~Dg~i~vwd~~~~~~~~~~~  267 (309)
                      ++|+|||++| ++++.|++|++||+.+++.+.++.
T Consensus       249 va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         249 IAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            9999999987 678889999999999999888875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=1.9e-22  Score=169.45  Aligned_cols=258  Identities=15%  Similarity=0.152  Sum_probs=192.2

Q ss_pred             EEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEE
Q 021648           26 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLS  105 (309)
Q Consensus        26 l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~  105 (309)
                      .++++.|++|++||+++++.++++.... .+..++|+|++++++++..  .++.|++||+.+++.+..+..|.. +..+.
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~-~p~~va~spdG~~l~v~~~--~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~   80 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANA--HSNDVSIIDTATNNVIATVPAGSS-PQGVA   80 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEG--GGTEEEEEETTTTEEEEEEECSSS-EEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCC-CceEEEEeCCCCEEEEEEC--CCCEEEEEECCCCceeeeeecccc-ccccc
Confidence            4678899999999999999999887654 3578899999998865532  378999999999999999887764 68899


Q ss_pred             ecCCCCe-EEEecCCCcEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEEEE--ECCEEEEEECCCCCcCCceEEEeCC
Q 021648          106 LCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVA--FGGYIRMFDARKYEKGPFDIFSVGG  181 (309)
Q Consensus       106 ~~~~~~~-l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~  181 (309)
                      ++++++. ++++..++.+.+||..+++....+..... ....+.+++..+...  .+..+.+|+......    ..... 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-  155 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV----INTVS-  155 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEE-
T ss_pred             cccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccce----eeecc-
Confidence            9999885 55667788999999998887766655443 345667776655443  367899999765321    12222 


Q ss_pred             CCCCCeEEEEccCCCEEEEEeCC-CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcC---CCcEEEEEC
Q 021648          182 DISDANVVKFSNDGRLMLLTTME-GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG---DGSVYAWSV  257 (309)
Q Consensus       182 ~~~~~~~v~~s~dg~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~---Dg~i~vwd~  257 (309)
                      .......++++|+++.++++..+ +.+.+|+............    ...+..++|+|+++.++.++.   ++.|++||+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~  231 (301)
T d1l0qa2         156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV----EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (301)
T ss_dssp             CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----SSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             cCCCceEEEeeccccceeeecccccccccccccceeeeecccc----cCCcceeeccccccccccccccceeeeeeeeec
Confidence            22346788999999988777655 6677888777766665542    234457899999998876643   468999999


Q ss_pred             CCCceEEEeecCCCCCcEEEECCCeeEE-EEccce--EEEeee
Q 021648          258 RSGKEVASWMSFDTEPPVIKWTPGSLMF-VTGSSE--LSFWIP  297 (309)
Q Consensus       258 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l-~s~~~d--~~~~~~  297 (309)
                      .+++.+..+..+ ..+..++|+|||+.+ ++++.+  +.+|.+
T Consensus       232 ~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~  273 (301)
T d1l0qa2         232 GTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDT  273 (301)
T ss_dssp             TTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence            999988887654 467899999999855 677665  555544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=1.4e-22  Score=172.71  Aligned_cols=236  Identities=11%  Similarity=0.056  Sum_probs=173.5

Q ss_pred             CEEEEeeCCCcEEEEEcCCCceeeeeeccc--cceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeeccc--
Q 021648           24 SYLVTASDDESIRLYDVTAATCLKTINSKK--YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD--   99 (309)
Q Consensus        24 ~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~--   99 (309)
                      ++++|++.|++|+|||+.++++++++..+.  ..+..++|+|++++++++.  ..++.|.+||+.+++.+..+..+..  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~--~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV--NKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE--TTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            589999999999999999999999887543  3467899999999876553  2378999999999999888876543  


Q ss_pred             ---CEEEEEecCCCCeEEEec------------CCCcEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEEEEECCEEEE
Q 021648          100 ---RVVSLSLCSSKDCFISGS------------LDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAFGGYIRM  163 (309)
Q Consensus       100 ---~v~~v~~~~~~~~l~s~s------------~Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~  163 (309)
                         .+..++|+|++++++.++            .+..+.+||..+.+....+..... ....+.+++.++.++ ++.+.+
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~  158 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHV  158 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEE
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEE-cCCcce
Confidence               345789999999988776            467888999888877666554332 345677777666554 344667


Q ss_pred             EECCCCCc--------------------------------------------------------------CCceEEEeCC
Q 021648          164 FDARKYEK--------------------------------------------------------------GPFDIFSVGG  181 (309)
Q Consensus       164 ~d~~~~~~--------------------------------------------------------------~~~~~~~~~~  181 (309)
                      ||....+.                                                              +.........
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             eeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence            77543110                                                              0000000111


Q ss_pred             CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 021648          182 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       182 ~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~  261 (309)
                      +........++|++.++...  ++.+++||+.+++.+.....    ...+..++|+|||++|++++.|++|+|||+.+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             CCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC----CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            12233445677888776654  58999999999999887653    3456789999999999999999999999999999


Q ss_pred             eEEEeec
Q 021648          262 EVASWMS  268 (309)
Q Consensus       262 ~~~~~~~  268 (309)
                      .+.++..
T Consensus       313 ~v~~i~~  319 (337)
T d1pbyb_         313 KKGQVDL  319 (337)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9988754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=1.1e-23  Score=187.96  Aligned_cols=268  Identities=9%  Similarity=-0.014  Sum_probs=180.4

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceee--ee---eccccceeEEEEecCCCEEEEEcCCCC
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK--TI---NSKKYGVDLVCFTSHPTTVIYSSKNGW   76 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~--~~---~~~~~~v~~~~~~~~~~~~~~~s~~g~   76 (309)
                      ++++.|..|. .+..++|||||+++++++.|+++++||+.+++...  .+   ..+...+...+|+||++++++++.  .
T Consensus        53 ~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~--~  129 (432)
T d1qksa2          53 EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY--W  129 (432)
T ss_dssp             CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE--E
T ss_pred             cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcC--C
Confidence            5778888774 68999999999999999999999999998876432  22   234444555677889998765432  3


Q ss_pred             CceeEEEEccCCceEEEeeec-----------ccCEEEEEecCCCCe-EEEecCCCcEEEeeCCCceeeeeee--ecCc-
Q 021648           77 DESLRLLSLHDNKYLRYFKGH-----------HDRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLR--VQGR-  141 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h-----------~~~v~~v~~~~~~~~-l~s~s~Dg~v~~Wd~~~~~~~~~~~--~~~~-  141 (309)
                      ++++++||.++++.+..+.+|           .....++.++++++. +++...++.+.+||..+.+......  .... 
T Consensus       130 ~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~  209 (432)
T d1qksa2         130 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFL  209 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSE
T ss_pred             CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCcc
Confidence            789999999999988877653           445677889998875 4677788999999988766543332  2222 


Q ss_pred             eeEEECCCCcEEEEEE--CCEEEEEECCCCCcCCceEEEeC---------------------------------------
Q 021648          142 PAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVG---------------------------------------  180 (309)
Q Consensus       142 ~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~---------------------------------------  180 (309)
                      ....+++++.++.++.  ++.+.++|.+..+..  ......                                       
T Consensus       210 ~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~  287 (432)
T d1qksa2         210 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLV--AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE  287 (432)
T ss_dssp             EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE--EEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             ccceECCCCCEEEEeccccceEEEeecccceEE--EEeccCccccccCcccceecCCCCceecccccCCceEEecccccc
Confidence            3467788887655554  578888887643210  000000                                       


Q ss_pred             ---CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEEC
Q 021648          181 ---GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  257 (309)
Q Consensus       181 ---~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~  257 (309)
                         .+...+....++|++..+++++.++.+++|+..+...         +......+++ ||++.+++++.|+++++|++
T Consensus       288 ~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~---------~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~  357 (432)
T d1qksa2         288 GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP---------EAEISGSVAV-FDIKAMTGDGSDPEFKTLPI  357 (432)
T ss_dssp             TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS---------SHHHHTCEEE-EEGGGCCCSSSCCCEEEECH
T ss_pred             cccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCC---------CCCeeeEEEE-EechhhcccccCCceEeccc
Confidence               0001234445566666666666666666665432110         1111223555 89999999999999999998


Q ss_pred             CCCceEEEeecCCCCCcEEEECCCeeEEEE
Q 021648          258 RSGKEVASWMSFDTEPPVIKWTPGSLMFVT  287 (309)
Q Consensus       258 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s  287 (309)
                      .++..+   ..|...+.+++|||||++++.
T Consensus       358 ~~~~~l---~~~~~~v~~~~fS~DG~~v~~  384 (432)
T d1qksa2         358 AEWAGI---TEGQPRVVQGEFNKDGTEVWF  384 (432)
T ss_dssp             HHHHTC---CSSCCEEEEEEECTTSSEEEE
T ss_pred             cccccc---CCCCCcEEEeEECCCCCEEEE
Confidence            665333   356677889999999987643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=2.4e-22  Score=178.70  Aligned_cols=272  Identities=15%  Similarity=0.101  Sum_probs=186.3

Q ss_pred             EeCCCC--CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEE--
Q 021648           18 DFHKSS--SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY--   93 (309)
Q Consensus        18 ~~s~~~--~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~--   93 (309)
                      .++.|.  .++++++.|++|+|||+.+++++.++..+. .+..++|+|||+++++++.   |+++++||+.+++....  
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~---d~~v~vwd~~t~~~~~~~~  100 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGR---DARIDMIDLWAKEPTKVAE  100 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCEEEEE
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeC---CCCEEEEEccCCceeEEEE
Confidence            344443  356889999999999999999999998875 4888999999999987754   78999999998874332  


Q ss_pred             ---eeecccCEEEEEecCCCCeE-EEecCCCcEEEeeCCCceeeeeeeecCc-------------eeEEECCCCcEEEEE
Q 021648           94 ---FKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQGR-------------PAAAYDDQGLVFAVA  156 (309)
Q Consensus        94 ---~~~h~~~v~~v~~~~~~~~l-~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~  156 (309)
                         ..+|...+.++.|+|||+++ +++..++++++||.++..+...+.....             ......+++..+...
T Consensus       101 i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~  180 (426)
T d1hzua2         101 IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  180 (426)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             EeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEe
Confidence               34777888889999999986 5556899999999998877655432110             112333333333333


Q ss_pred             E--CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe-CCCcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648          157 F--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  233 (309)
Q Consensus       157 ~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~  233 (309)
                      .  .+.+.+++.......  .... .+.......+.++|+|+++.++. .+..+.++|..++........... ......
T Consensus       181 ~~~~~~i~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  256 (426)
T d1hzua2         181 VKETGKVLLVNYKDIDNL--TVTS-IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT-PHPGRG  256 (426)
T ss_dssp             ETTTTEEEEEECSSSSSC--EEEE-EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSC-CCCSCC
T ss_pred             cCCCCeEEEEEeccccce--eeEE-eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCc-ccccce
Confidence            2  345555554432211  1111 12234567889999999877765 556799999999988876654321 122223


Q ss_pred             EEECCCC-CEE--EEEcCCCcEEEEECCC-------CceEEEeecCCCCCcEEEECCCeeEEEE-------ccce--EEE
Q 021648          234 ASFSPEG-MFV--ISGSGDGSVYAWSVRS-------GKEVASWMSFDTEPPVIKWTPGSLMFVT-------GSSE--LSF  294 (309)
Q Consensus       234 ~~~sp~g-~~l--~s~s~Dg~i~vwd~~~-------~~~~~~~~~~~~~v~~l~~~p~~~~l~s-------~~~d--~~~  294 (309)
                      ..+.+++ ..+  ++.+.|+.+.+|+...       ++...++.+|...+..++|+||++.|+.       ++.+  +++
T Consensus       257 ~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~v  336 (426)
T d1hzua2         257 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV  336 (426)
T ss_dssp             EEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEE
T ss_pred             eeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEE
Confidence            4443332 222  3445688888888754       3677889999999999999999999884       4444  666


Q ss_pred             eee
Q 021648          295 WIP  297 (309)
Q Consensus       295 ~~~  297 (309)
                      |..
T Consensus       337 wd~  339 (426)
T d1hzua2         337 FDL  339 (426)
T ss_dssp             EET
T ss_pred             EEC
Confidence            654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=4.9e-23  Score=176.21  Aligned_cols=271  Identities=10%  Similarity=0.018  Sum_probs=186.5

Q ss_pred             EEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec-cccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEee
Q 021648           17 MDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK   95 (309)
Q Consensus        17 i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~   95 (309)
                      ++|++++++|++++.|++|.+||+.+++.++++.. +...+..++|+||++.++++..  .++.|++||+.+++.+..+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~--~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN--HYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC--CCCcEEEEeCccCeeeeeec
Confidence            57899999999999999999999999999998874 4556789999999998876542  37899999999998887765


Q ss_pred             ecc------cCEEEEEecCCCCeEEEec------------CCCcEEEeeCCCceeeeeeeec----CceeEEECCCCcEE
Q 021648           96 GHH------DRVVSLSLCSSKDCFISGS------------LDRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVF  153 (309)
Q Consensus        96 ~h~------~~v~~v~~~~~~~~l~s~s------------~Dg~v~~Wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~  153 (309)
                      ...      ..+..+.|+|||++++.++            .+..+.+||..+++....+...    ........+++.++
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence            332      3456789999999887665            4778889988776654433221    12234445556555


Q ss_pred             EEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC--------------------------CEEEEEeCCCcE
Q 021648          154 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG--------------------------RLMLLTTMEGHI  207 (309)
Q Consensus       154 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--------------------------~~l~~~~~dg~v  207 (309)
                      ..  ++.+.+|++...+.    ...+... .....+.++|++                          ..+.++..++.+
T Consensus       160 ~~--~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (346)
T d1jmxb_         160 VA--GPDIYKMDVKTGKY----TVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY  232 (346)
T ss_dssp             EE--SSSEEEECTTTCCE----EEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred             Ee--CCcceEEEccCCCE----EEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceE
Confidence            43  45678888754321    1111110 111122233333                          233344455678


Q ss_pred             EEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEE
Q 021648          208 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT  287 (309)
Q Consensus       208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s  287 (309)
                      .+||..++........  .+...+..+.++|++.+++.++. +.|++||..+++.+..+. +...+.+++|+|||+++++
T Consensus       233 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v  308 (346)
T d1jmxb_         233 LSVDLKTGKTHTQEFA--DLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL  308 (346)
T ss_dssp             EEEETTTCCEEEEEEE--ECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEE
T ss_pred             EEEECCCCceEEEEee--cccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEE
Confidence            8888887776554322  13455677889999988888765 579999999998888765 4557999999999999999


Q ss_pred             ccceEEEeeecCC
Q 021648          288 GSSELSFWIPDLS  300 (309)
Q Consensus       288 ~~~d~~~~~~~~~  300 (309)
                      ++.|..+-+||+.
T Consensus       309 ~~~d~~v~v~D~~  321 (346)
T d1jmxb_         309 GGTFNDLAVFNPD  321 (346)
T ss_dssp             ESBSSEEEEEETT
T ss_pred             EeCCCcEEEEECc
Confidence            8877444444443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=3e-23  Score=185.14  Aligned_cols=196  Identities=12%  Similarity=0.089  Sum_probs=144.4

Q ss_pred             CCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce-----EEEe
Q 021648           20 HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-----LRYF   94 (309)
Q Consensus        20 s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~-----~~~~   94 (309)
                      +++.-++++.+.|++|+|||..++++++.+..+. .+..++|+||++++++++.   |+++++||+.+++.     +...
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~---dg~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGR---DGKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCCEEEEEECC
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcC---CCCEEEEEeeCCCceEEEEEecC
Confidence            4443446999999999999999999999998874 5889999999999988764   78999999988763     2333


Q ss_pred             eecccCEEEEEecCCCCeE-EEecCCCcEEEeeCCCceeeeeeeecC-------------ceeEEECCCCcEEEEE--EC
Q 021648           95 KGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQG-------------RPAAAYDDQGLVFAVA--FG  158 (309)
Q Consensus        95 ~~h~~~v~~v~~~~~~~~l-~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~  158 (309)
                      .+|.+.+.+..|+|||++| ++++.|+++++||.+++++...+....             .....+++++..+..+  .+
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~  184 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  184 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence            4677778888899999975 788899999999999988766543211             1124556666544443  36


Q ss_pred             CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC-CCcEEEEECCCCeEeEEee
Q 021648          159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYN  222 (309)
Q Consensus       159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~-dg~v~i~d~~~~~~~~~~~  222 (309)
                      +.|.+||....+..  .+..+. .......++|+|||+++++++. ++.+.++|..+++......
T Consensus       185 ~~i~~~d~~~~~~~--~~~~i~-~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         185 GKILLVDYTDLNNL--KTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             TEEEEEETTCSSEE--EEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEEccCCCcc--eEEEEc-ccCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            89999997654322  222221 1134578999999998776654 5689999998887776554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.90  E-value=1.4e-20  Score=163.28  Aligned_cols=269  Identities=10%  Similarity=-0.004  Sum_probs=185.8

Q ss_pred             ccceEecCCCcceEEEEeCCCCCEEEEee----------CCCcEEEEEcCCCceeeeeeccccce-------eEEEEecC
Q 021648            2 EVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSKKYGV-------DLVCFTSH   64 (309)
Q Consensus         2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s----------~D~~v~iWd~~~~~~~~~~~~~~~~v-------~~~~~~~~   64 (309)
                      +++.++..+..+  .+.|+|||++|++++          .|+.|++||..+++.+..+..+....       ..+.|+++
T Consensus        58 ~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  135 (373)
T d2madh_          58 SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN  135 (373)
T ss_pred             CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeC
Confidence            345555555443  689999999998875          46789999999999988876654432       34677888


Q ss_pred             CCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeeecC---
Q 021648           65 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQG---  140 (309)
Q Consensus        65 ~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~---  140 (309)
                      ++.++..... .+..+.+|+....+..    .+.....++.++|+++ .+++.+.|+++.+||..............   
T Consensus       136 g~~~~v~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~  210 (373)
T d2madh_         136 NADLLFFQFA-AGPAVGLVVQGGSSDD----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTA  210 (373)
T ss_pred             CCcEEEEEEc-CCCceEEeeccCCeEE----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecccc
Confidence            8766554432 2567888888776543    3444567888999887 45788999999999988776654432211   


Q ss_pred             -----ceeEEECCCCcEEEEEECCEEEEEECCCCCcCCce--------EEEeCCCCCCCeEEEEccCCCE----------
Q 021648          141 -----RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD--------IFSVGGDISDANVVKFSNDGRL----------  197 (309)
Q Consensus       141 -----~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--------~~~~~~~~~~~~~v~~s~dg~~----------  197 (309)
                           .......+.+.++....++.+.+|+..........        .............++++|++..          
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  290 (373)
T d2madh_         211 AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA  290 (373)
T ss_pred             CccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCce
Confidence                 11223445566777777888988886643211000        0011111122334455665554          


Q ss_pred             EEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE--EEEEcCCCcEEEEECCCCceEEEeecCCCCCcE
Q 021648          198 MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF--VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV  275 (309)
Q Consensus       198 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~--l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~  275 (309)
                      ++....++.+.+||..+++.+..+..    ...+..++|+|||++  +++++.|++|+|||+.+++.+.++..+...+..
T Consensus       291 ~~~~~~~~~v~~~d~~t~~~~~~~~~----~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~  366 (373)
T d2madh_         291 WKLHAAAKEVTSVTGLVGQTSSQISL----GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQV  366 (373)
T ss_pred             EEeecCCCeEEEEECCCCcEEEEecC----CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcE
Confidence            44556677899999999988876642    345678999999984  578899999999999999999999988888888


Q ss_pred             EEECCC
Q 021648          276 IKWTPG  281 (309)
Q Consensus       276 l~~~p~  281 (309)
                      |++.+.
T Consensus       367 l~~~~~  372 (373)
T d2madh_         367 LSVMNE  372 (373)
T ss_pred             EEEecC
Confidence            887654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=6.5e-20  Score=157.75  Aligned_cols=271  Identities=13%  Similarity=0.088  Sum_probs=175.0

Q ss_pred             cceEecCCCcceEEEEeCCCCCEEEEe----------eCCCcEEEEEcCCCceeeeeecccc-------ceeEEEEecCC
Q 021648            3 VGMSFRDYNGRISSMDFHKSSSYLVTA----------SDDESIRLYDVTAATCLKTINSKKY-------GVDLVCFTSHP   65 (309)
Q Consensus         3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~----------s~D~~v~iWd~~~~~~~~~~~~~~~-------~v~~~~~~~~~   65 (309)
                      ++.++..+.  +..++|||||++|+.+          +.|+.|++||+.+++.+..+..+..       ....++|++++
T Consensus        40 ~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  117 (355)
T d2bbkh_          40 VIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG  117 (355)
T ss_dssp             EEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred             EEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCC
Confidence            344454433  3478999999988764          3488999999999998887654322       13457899999


Q ss_pred             CEEEEEcCCCCCceeEEEEccCCceEEEeeecccC-------EEEEEecCCCCeEEEe-cCCCcEEEeeCCCceeeeeee
Q 021648           66 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR-------VVSLSLCSSKDCFISG-SLDRTVLLWDQRAEKCQGLLR  137 (309)
Q Consensus        66 ~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~-------v~~v~~~~~~~~l~s~-s~Dg~v~~Wd~~~~~~~~~~~  137 (309)
                      ..++..+. +.+..+.+|+..+++.+..+..+...       ...+.+++|++.+... ..++.+.+++...........
T Consensus       118 ~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~  196 (355)
T d2bbkh_         118 KTLLFYQF-SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL  196 (355)
T ss_dssp             SEEEEEEC-SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCB
T ss_pred             CeeEEecC-CCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecce
Confidence            98887653 33678999999999888777654322       2223444444433222 223333333332221111100


Q ss_pred             ecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeC--------CCCCCCeEEEEccCCCEEEEEeCC-----
Q 021648          138 VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG--------GDISDANVVKFSNDGRLMLLTTME-----  204 (309)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------~~~~~~~~v~~s~dg~~l~~~~~d-----  204 (309)
                        ........+++.++....++.+++|++.......+......        ........+++++++..+.....+     
T Consensus       197 --~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~  274 (355)
T d2bbkh_         197 --INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR  274 (355)
T ss_dssp             --CSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred             --eeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCcee
Confidence              01123344555666666789999999765432111111100        001223458899999988776544     


Q ss_pred             -----CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC--EEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEE
Q 021648          205 -----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM--FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK  277 (309)
Q Consensus       205 -----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~--~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~  277 (309)
                           ..|.+||..+++.+.++..    ...+..++|+|||+  ++++++.|+.|+|||+++++.+.++..+......|.
T Consensus       275 ~~~~~~~v~v~d~~t~~~~~~~~~----~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~  350 (355)
T d2bbkh_         275 HKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVIT  350 (355)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEE
T ss_pred             ecCCCCeEEEEeCCCCcEEEEecC----CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEE
Confidence                 3699999999988877653    23456899999998  467788899999999999999999988877777777


Q ss_pred             ECCCe
Q 021648          278 WTPGS  282 (309)
Q Consensus       278 ~~p~~  282 (309)
                      +.++|
T Consensus       351 ~~d~~  355 (355)
T d2bbkh_         351 TADMG  355 (355)
T ss_dssp             CCCCC
T ss_pred             eCCCC
Confidence            66553

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=3.6e-20  Score=158.10  Aligned_cols=259  Identities=9%  Similarity=-0.040  Sum_probs=177.5

Q ss_pred             ccceEec-CCCcceEEEEeCCCCCEE-EEeeCCCcEEEEEcCCCceeeeeeccc------cceeEEEEecCCCEEEEEcC
Q 021648            2 EVGMSFR-DYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKK------YGVDLVCFTSHPTTVIYSSK   73 (309)
Q Consensus         2 ~~~~~~~-~h~~~V~~i~~s~~~~~l-~t~s~D~~v~iWd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~s~   73 (309)
                      +++.+++ .|...+.+++|+|||+++ ++++.|+.|.+||+.+++.+..+....      ..+..++|+++++.++++..
T Consensus        29 ~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence            4566665 456678899999999986 677789999999999998887665332      23567899999998876542


Q ss_pred             C---------CCCceeEEEEccCCceEEEeeecc--cCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce
Q 021648           74 N---------GWDESLRLLSLHDNKYLRYFKGHH--DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP  142 (309)
Q Consensus        74 ~---------g~d~~i~~~d~~~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~  142 (309)
                      .         ..+..+.+||..+++....+..+.  ..+..+.++++++.++++   +.+.+||..+++....+......
T Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  185 (346)
T d1jmxb_         109 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWN  185 (346)
T ss_dssp             EEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCC
T ss_pred             CCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCCc
Confidence            1         126788999998877655554433  345566677777666553   45889998887766554322110


Q ss_pred             -eEEECCC-----------Cc----------------EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC
Q 021648          143 -AAAYDDQ-----------GL----------------VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND  194 (309)
Q Consensus       143 -~~~~~~~-----------~~----------------~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d  194 (309)
                       ...+.+.           +.                +.....+..+.+||.....   ........+...+..+.++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  262 (346)
T d1jmxb_         186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK---THTQEFADLTELYFTGLRSPK  262 (346)
T ss_dssp             CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC---EEEEEEEECSSCEEEEEECSS
T ss_pred             cceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc---eEEEEeecccceeEEEEEeCC
Confidence             0000000           00                1111223567778765432   222223334456677888998


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCC
Q 021648          195 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT  271 (309)
Q Consensus       195 g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~  271 (309)
                      +..++... ++.|++||..+++.+..+..    ...+..++|||||++|++++.|+.|+|||+++++.+.++....+
T Consensus       263 ~~~~~~~~-~~~v~v~d~~~~~~~~~~~~----~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         263 DPNQIYGV-LNRLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             CTTEEEEE-ESEEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             CCEEEEec-CCeEEEEECCCCcEEEEEcC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence            88877655 46799999999998887653    23577899999999999999999999999999999998875444

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.86  E-value=1.9e-18  Score=149.71  Aligned_cols=292  Identities=8%  Similarity=-0.037  Sum_probs=189.8

Q ss_pred             cCCCcceEEEEeCCCCCEEEEe-----eCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC-------C
Q 021648            8 RDYNGRISSMDFHKSSSYLVTA-----SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------G   75 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~~~~l~t~-----s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------g   75 (309)
                      ..|.+++.+++++|||++++..     +.++.|.+||..+++.+.++..+..  ..++|+|++++++++...       .
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccc
Confidence            4688999999999999987654     3456799999999999998876653  368999999998877532       1


Q ss_pred             CCceeEEEEccCCceEEEeeecccCE-------EEEEecCCCCeEEEe--cCCCcEEEeeCCCceeeeeeeecCceeEEE
Q 021648           76 WDESLRLLSLHDNKYLRYFKGHHDRV-------VSLSLCSSKDCFISG--SLDRTVLLWDQRAEKCQGLLRVQGRPAAAY  146 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~~~~~~~h~~~v-------~~v~~~~~~~~l~s~--s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~  146 (309)
                      .++.|++||..+++.+..+..+....       ..+.|+++++.+...  ..++.+.+|+....+........  ....+
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  172 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP--TCYHI  172 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccc--eeEEE
Confidence            36789999999999988887766554       446788888865544  44678889988776654433322  22333


Q ss_pred             CCCC--cEEEEEECCEEEEEECCCCCcCCceEEEeC--CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648          147 DDQG--LVFAVAFGGYIRMFDARKYEKGPFDIFSVG--GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  222 (309)
Q Consensus       147 ~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~  222 (309)
                      .+++  .+++...++.+.+|+...............  +.........+++++.+ +..+.++.+++|+...+.......
T Consensus       173 s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~  251 (373)
T d2madh_         173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKAP  251 (373)
T ss_pred             ecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEEe
Confidence            4443  344556789999999765432111111111  11112233455665544 566688899999887665432221


Q ss_pred             ec--C-------CCCCccceEEECCCCCEE----------EEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCee
Q 021648          223 VK--P-------VSRNSTLEASFSPEGMFV----------ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL  283 (309)
Q Consensus       223 ~~--~-------~~~~~~~~~~~sp~g~~l----------~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~  283 (309)
                      ..  .       ........++++|++..+          ++...++.+.+||..+++.+..+. +...+..++|+|||+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~  330 (373)
T d2madh_         252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGG  330 (373)
T ss_pred             eccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCC
Confidence            10  0       001112235666666554          455666789999999999888764 566789999999987


Q ss_pred             --EEEEccce--EEEeeec-CCCcccc
Q 021648          284 --MFVTGSSE--LSFWIPD-LSKLGAY  305 (309)
Q Consensus       284 --~l~s~~~d--~~~~~~~-~~~~~~~  305 (309)
                        ++++++.|  +++|... .+.++.+
T Consensus       331 ~~l~vt~~~d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         331 PDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence              45677776  5555443 3333443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=1.9e-19  Score=154.85  Aligned_cols=282  Identities=11%  Similarity=0.009  Sum_probs=185.4

Q ss_pred             ceEEEEeCCCCCEEEEe-----eCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC-------CCCcee
Q 021648           13 RISSMDFHKSSSYLVTA-----SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESL   80 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~-----s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------g~d~~i   80 (309)
                      ++...+.+||+++++..     +.+.+|.+||..+++.+.++..+..  ..++|+|+++++++++..       ..|+.|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            34444668999988654     3567899999999999998876643  368999999988765421       126789


Q ss_pred             EEEEccCCceEEEeeecccC-------EEEEEecCCCCeEEEe--cCCCcEEEeeCCCceeeeeeeecCceeEEECCCCc
Q 021648           81 RLLSLHDNKYLRYFKGHHDR-------VVSLSLCSSKDCFISG--SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL  151 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~~~-------v~~v~~~~~~~~l~s~--s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~  151 (309)
                      ++||+++++.+..+..+...       ...+.|++++++++.+  +.+..+.+||..+++....+...............
T Consensus        81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d2bbkh_          81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT  160 (355)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence            99999999988877654432       3457899999977655  45778999999998877766554332222222233


Q ss_pred             EEEEEECCEEEEEECCCCCcCCceEEEe----CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeE--EeeecC
Q 021648          152 VFAVAFGGYIRMFDARKYEKGPFDIFSV----GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS--TYNVKP  225 (309)
Q Consensus       152 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~--~~~~~~  225 (309)
                      .++.+.|+....+.......  ......    ......+....+++++..++..+.++.+++|+...+....  ....+.
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  238 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGT--PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT  238 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSC--CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred             eEEEcCCCCEEEEEecCCCe--EEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcc
Confidence            34444454444443222110  011110    0111234445788888899999999999999987765432  111100


Q ss_pred             -------CCCCccceEEECCCCCEEEEEcCCC----------cEEEEECCCCceEEEeecCCCCCcEEEECCCee--EEE
Q 021648          226 -------VSRNSTLEASFSPEGMFVISGSGDG----------SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFV  286 (309)
Q Consensus       226 -------~~~~~~~~~~~sp~g~~l~s~s~Dg----------~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~  286 (309)
                             ........++++|++..++..+.++          .|.+||..+++.+..+.. ...+.+++|+|||+  +++
T Consensus       239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v  317 (355)
T d2bbkh_         239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYA  317 (355)
T ss_dssp             HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEE
T ss_pred             cceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEE
Confidence                   0011223578999999888775543          699999999998888764 34578999999986  456


Q ss_pred             EccceEEEeeecC
Q 021648          287 TGSSELSFWIPDL  299 (309)
Q Consensus       287 s~~~d~~~~~~~~  299 (309)
                      +++.|..+++||+
T Consensus       318 ~~~~d~~i~v~D~  330 (355)
T d2bbkh_         318 LSTGDKTLYIHDA  330 (355)
T ss_dssp             EETTTTEEEEEET
T ss_pred             EECCCCEEEEEEC
Confidence            7766655555544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=5e-18  Score=144.19  Aligned_cols=273  Identities=10%  Similarity=0.074  Sum_probs=174.6

Q ss_pred             EEEEeeCCCcEEEEEcCCCceeeeee--ccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEee---eccc
Q 021648           25 YLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK---GHHD   99 (309)
Q Consensus        25 ~l~t~s~D~~v~iWd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~---~h~~   99 (309)
                      .+++++.|++|++||+++...++.+.  .+...+..++|+|++++++++..  .|+.|++|++........+.   .+..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~--~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR--PEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC--CCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            46888899999999997544433332  34566889999999999876643  37899999997765433332   3445


Q ss_pred             CEEEEEecCCCCeEEEecC-CCcEEEeeCCCceeeeeeeec----CceeEEECCCCcEEEEEE--CCEEEEEECCCCCcC
Q 021648          100 RVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKG  172 (309)
Q Consensus       100 ~v~~v~~~~~~~~l~s~s~-Dg~v~~Wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~  172 (309)
                      .+..++|+|||++|++++. ++++.+|+.............    ......+++++..+....  +..|.+|+.......
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence            6778999999998888874 778999987665544333221    122345667666555443  478999987653221


Q ss_pred             CceEE--EeCCCCCCCeEEEEccCCCEEEEEe-CCCcEEEEECCCC--eEe--EEeeec---CCCCCccceEEECCCCCE
Q 021648          173 PFDIF--SVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRG--TLL--STYNVK---PVSRNSTLEASFSPEGMF  242 (309)
Q Consensus       173 ~~~~~--~~~~~~~~~~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~--~~~--~~~~~~---~~~~~~~~~~~~sp~g~~  242 (309)
                      .....  ...........++|++++.++.... ..+...+++....  ...  ......   .........++++||+++
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  243 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  243 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence            11111  1112223457899999998876654 4567777775332  111  111111   111233456789999987


Q ss_pred             EEEE-cCCCcEEEEECCCCceEEEe---ecCCCCCcEEEECCCeeEEEEccc---eEEEeeecC
Q 021648          243 VISG-SGDGSVYAWSVRSGKEVASW---MSFDTEPPVIKWTPGSLMFVTGSS---ELSFWIPDL  299 (309)
Q Consensus       243 l~s~-s~Dg~i~vwd~~~~~~~~~~---~~~~~~v~~l~~~p~~~~l~s~~~---d~~~~~~~~  299 (309)
                      ++.+ ..++.+.+|++.........   ......+..++|+|||++|+.+++   .+++|.++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         244 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             eeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            7655 66789999998765433332   334456788999999997655543   378887765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=9.8e-18  Score=142.37  Aligned_cols=252  Identities=10%  Similarity=0.081  Sum_probs=162.8

Q ss_pred             CCCcceEEEEeCCCCCEE-EEeeCCCcEEEEEcCCCceeeeeec---cccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648            9 DYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINS---KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   84 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l-~t~s~D~~v~iWd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d   84 (309)
                      .|.+.|..|+|+|||++| +++..|++|++|++.......++..   ....+..++++|++++++++..  .+..+++|+
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~--~~~~v~~~~  111 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY--NAGNVSVTR  111 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET--TTTEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeeccc--CCCceeeec
Confidence            588999999999999988 5555699999999986655443332   2234667999999999888753  267899999


Q ss_pred             ccCCceEE--EeeecccCEEEEEecCCCCeEEEec-CCCcEEEeeCCCceeeeeee-----ec-C-c-eeEEECCCCcEE
Q 021648           85 LHDNKYLR--YFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLR-----VQ-G-R-PAAAYDDQGLVF  153 (309)
Q Consensus        85 ~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~~~~~~~~~~-----~~-~-~-~~~~~~~~~~~~  153 (309)
                      ........  ....|...+.++.++|++++++.++ .+..+.+|+...........     .. + . ....+.+.+..+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~  191 (333)
T d1ri6a_         112 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  191 (333)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             cccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeE
Confidence            87765433  3445777888999999999877776 45678999876543222111     11 1 1 234566666555


Q ss_pred             EEEE--CCEEEEEECCCCCcCCceEEEeC------CCCCCCeEEEEccCCCEEEEE-eCCCcEEEEECCCCeEeEEeeec
Q 021648          154 AVAF--GGYIRMFDARKYEKGPFDIFSVG------GDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVK  224 (309)
Q Consensus       154 ~~~~--~~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~v~~s~dg~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~  224 (309)
                      ....  .+...+++...............      ........+++++|++++... ..++.+.+|+.............
T Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (333)
T d1ri6a_         192 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF  271 (333)
T ss_dssp             EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred             EeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEE
Confidence            4443  46777877543221111111111      111344567899999876654 56789999987654333222221


Q ss_pred             CCCCCccceEEECCCCCEEEEEc-CCCcEEEEE--CCCCce
Q 021648          225 PVSRNSTLEASFSPEGMFVISGS-GDGSVYAWS--VRSGKE  262 (309)
Q Consensus       225 ~~~~~~~~~~~~sp~g~~l~s~s-~Dg~i~vwd--~~~~~~  262 (309)
                      ......+..++|+|||++|++++ .++.|++|+  .++++.
T Consensus       272 ~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         272 QPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             eCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            11224456799999999987765 568999995  466653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=1.8e-18  Score=146.80  Aligned_cols=222  Identities=9%  Similarity=0.087  Sum_probs=155.9

Q ss_pred             EEEEEcCCCCCceeEEEEccCCceEEEeeec--ccCEEEEEecCCCCeE-EEecCCCcEEEeeCCCceeeeeeeecC---
Q 021648           67 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGH--HDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQG---  140 (309)
Q Consensus        67 ~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h--~~~v~~v~~~~~~~~l-~s~s~Dg~v~~Wd~~~~~~~~~~~~~~---  140 (309)
                      ++++++.   |++|++||+++++.++.+..+  ...+.+++|+|||+++ ++++.|+.|.+||+++++....+....   
T Consensus         3 ~~vt~~~---d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           3 YILAPAR---PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEET---TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             EEEEEcC---CCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            4566553   889999999999999988754  3467899999999976 677889999999999988776654321   


Q ss_pred             ----ceeEEECCCCcEEEEEE-------------CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC
Q 021648          141 ----RPAAAYDDQGLVFAVAF-------------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM  203 (309)
Q Consensus       141 ----~~~~~~~~~~~~~~~~~-------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~  203 (309)
                          .....+++++..+..+.             +..+.+||....+.    ..... ....+..++++|||+++++++.
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~-~~~~~~~~~~s~dg~~l~~~~~  154 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR----RKAFE-APRQITMLAWARDGSKLYGLGR  154 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE----EEEEE-CCSSCCCEEECTTSSCEEEESS
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE----EEecc-ccCCceEEEEcCCCCEEEEEcC
Confidence                12356667665544332             45788888765321    11121 2234677899999999988764


Q ss_pred             CCcEEEEECCCCeEeEEeeecC----------------------------------------------------------
Q 021648          204 EGHIHVLDSFRGTLLSTYNVKP----------------------------------------------------------  225 (309)
Q Consensus       204 dg~v~i~d~~~~~~~~~~~~~~----------------------------------------------------------  225 (309)
                        .+.+||..+++....+....                                                          
T Consensus       155 --~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (337)
T d1pbyb_         155 --DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA  232 (337)
T ss_dssp             --SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred             --CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEE
Confidence              46678887776555431100                                                          


Q ss_pred             -----CCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCC
Q 021648          226 -----VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS  300 (309)
Q Consensus       226 -----~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~  300 (309)
                           .+.......+++|++.+++.+  |+.|++||+.+++.+..+. +...+.+++|+|||+.|++++.+.++.+|++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             EEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence                 011223345678888888766  5889999999999888764 56678999999999999888887555555544


Q ss_pred             C
Q 021648          301 K  301 (309)
Q Consensus       301 ~  301 (309)
                      .
T Consensus       310 t  310 (337)
T d1pbyb_         310 T  310 (337)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=5.8e-17  Score=140.57  Aligned_cols=286  Identities=7%  Similarity=-0.051  Sum_probs=179.7

Q ss_pred             CCCcceEEEEeCCCCCE---EEEeeCCCcEEEE--EcCCCceeeeeeccccceeEEEEecCCCEEEEEcC-------CCC
Q 021648            9 DYNGRISSMDFHKSSSY---LVTASDDESIRLY--DVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-------NGW   76 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~---l~t~s~D~~v~iW--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~-------~g~   76 (309)
                      .+.+....++..++++.   .+++..+++.++|  |..+++.+.++..+..+  .++++|+++.+++++.       +..
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~   94 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKR   94 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCcccccccc
Confidence            35566666777888875   3445666765555  99999999888876543  5789999998887642       134


Q ss_pred             CceeEEEEccCCceEEEeeecccC-------EEEEEecCCCCeEEEec-CCCcEEEeeCCCceeeeeeeecCceeEEECC
Q 021648           77 DESLRLLSLHDNKYLRYFKGHHDR-------VVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD  148 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h~~~-------v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~  148 (309)
                      |+.|++||..+++.+..+..+...       ...++|+|||++++.++ .++.+.+||+.+++....+..+.........
T Consensus        95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  174 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGA  174 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEE
T ss_pred             CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCC
Confidence            778999999999988887655432       23589999999887775 5799999999999887776554432222222


Q ss_pred             CCcEEEEEECCEEEEEECCCCCcCCceE--EEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecC-
Q 021648          149 QGLVFAVAFGGYIRMFDARKYEKGPFDI--FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-  225 (309)
Q Consensus       149 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-  225 (309)
                      ...+++.+.|+.+..+++..........  .....+......+.+++++..+..  ..+.+++++...+.......... 
T Consensus       175 ~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~  252 (368)
T d1mdah_         175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGN  252 (368)
T ss_dssp             TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSS
T ss_pred             CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccc
Confidence            3334444556777777654322111000  001111223345667777765543  34556666655444332211100 


Q ss_pred             --------CCCCccceEEECCCCCEEEEEcCC---------CcEEEEECCCCceEEEeecCCCCCcEEEECCCee--EEE
Q 021648          226 --------VSRNSTLEASFSPEGMFVISGSGD---------GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFV  286 (309)
Q Consensus       226 --------~~~~~~~~~~~sp~g~~l~s~s~D---------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~  286 (309)
                              ........++++|++..++....+         ..|.+||..+++.+.++.. ...+..++|+||++  +++
T Consensus       253 ~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~  331 (368)
T d1mdah_         253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYA  331 (368)
T ss_dssp             CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEE
T ss_pred             cceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEE
Confidence                    000112347899998877665332         2599999999998887753 34678899999986  456


Q ss_pred             EccceEEEeeecC
Q 021648          287 TGSSELSFWIPDL  299 (309)
Q Consensus       287 s~~~d~~~~~~~~  299 (309)
                      ++..+..+++||.
T Consensus       332 s~~~~~~v~v~D~  344 (368)
T d1mdah_         332 NSAGTEVLDIYDA  344 (368)
T ss_dssp             EETTTTEEEEEES
T ss_pred             EeCCCCeEEEEEC
Confidence            7666544444443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=4e-16  Score=135.18  Aligned_cols=263  Identities=11%  Similarity=-0.014  Sum_probs=164.6

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEee----------CCCcEEEEEcCCCceeeeeecccc-------ceeEEEEecCCCE
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSKKY-------GVDLVCFTSHPTT   67 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s----------~D~~v~iWd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~   67 (309)
                      .++.++...  .+.|+|||+.|+.++          .|++|++||..+++++..+..+..       ....++|+|++++
T Consensus        60 ~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~  137 (368)
T d1mdah_          60 GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC  137 (368)
T ss_dssp             EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC
T ss_pred             EEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCE
Confidence            334444333  578999999887754          478899999999999888764432       1235899999999


Q ss_pred             EEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec--------
Q 021648           68 VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--------  139 (309)
Q Consensus        68 ~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--------  139 (309)
                      ++++..  .++++.+||+++++.+..+..+.....   +......++..+.||++.+|+.............        
T Consensus       138 l~va~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (368)
T d1mdah_         138 LLFFLF--GSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC  212 (368)
T ss_dssp             EEEEEC--SSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB
T ss_pred             EEEEeC--CCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccccc
Confidence            887753  268999999999998888776554321   1123446777788888888876544322111100        


Q ss_pred             CceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEE--------eCCCCCCCeEEEEccCCCEEEEEeCC-------
Q 021648          140 GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFS--------VGGDISDANVVKFSNDGRLMLLTTME-------  204 (309)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--------~~~~~~~~~~v~~s~dg~~l~~~~~d-------  204 (309)
                      ........+.+..+. ..++.+.+++.............        ..........++++|++..+.....+       
T Consensus       213 ~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~  291 (368)
T d1mdah_         213 SSQAAQANYPGMLVW-AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA  291 (368)
T ss_dssp             CSCCEEETTTTEEEE-CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred             ceeecccccCcEEEE-ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeec
Confidence            001123333333332 23444555554321110000000        00001123457889998876554322       


Q ss_pred             --CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE--EEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECC
Q 021648          205 --GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF--VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP  280 (309)
Q Consensus       205 --g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~--l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p  280 (309)
                        .+|.+||..+++.+.++..    ...+..++|+|||+.  +++++.|+.|+|||..+++.+.++... .....|++-+
T Consensus       292 ~~~~v~v~D~~t~~~~~~~~~----~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g-~~P~~l~~~~  366 (368)
T d1mdah_         292 AAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD-KGPESLSVQN  366 (368)
T ss_dssp             CEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC-SCCCEEECCC
T ss_pred             CCceEEEEECCCCcEeEEecC----CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC-CCCCEEEEec
Confidence              2588999999988876543    234667999999973  567788999999999999999887643 3456666533

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.58  E-value=9.1e-14  Score=121.55  Aligned_cols=260  Identities=12%  Similarity=0.086  Sum_probs=161.8

Q ss_pred             EEEeeCCCcEEEEEcCCCceeeeeecc------------------------------ccceeEEEEecCCCEEEEEcCCC
Q 021648           26 LVTASDDESIRLYDVTAATCLKTINSK------------------------------KYGVDLVCFTSHPTTVIYSSKNG   75 (309)
Q Consensus        26 l~t~s~D~~v~iWd~~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~~~~~s~~g   75 (309)
                      ++|++.+|.|++||+.+++.++.+.-.                              .-......+++||++++....  
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~--   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK--   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET--
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC--
Confidence            789999999999999999887765321                              011222334678888877653  


Q ss_pred             CCceeEEEEccCCceEEEee-ecccCEEEEEecCCCC--eEEEecCCC-----------------cEEEeeCCCceeeee
Q 021648           76 WDESLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKD--CFISGSLDR-----------------TVLLWDQRAEKCQGL  135 (309)
Q Consensus        76 ~d~~i~~~d~~~~~~~~~~~-~h~~~v~~v~~~~~~~--~l~s~s~Dg-----------------~v~~Wd~~~~~~~~~  135 (309)
                      .+..|.++|+.+++..+.+. .+...+..+.|+|+++  +++..+.+.                 .+..+|..+.+....
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            37899999999998877765 3567899999999988  444444332                 224467666665555


Q ss_pred             eeecCc-eeEEECCCCcEEEEEE-C---------------CEEEEEECCC---------C--------------CcCCce
Q 021648          136 LRVQGR-PAAAYDDQGLVFAVAF-G---------------GYIRMFDARK---------Y--------------EKGPFD  175 (309)
Q Consensus       136 ~~~~~~-~~~~~~~~~~~~~~~~-~---------------~~i~~~d~~~---------~--------------~~~~~~  175 (309)
                      +.+... ....+++++..+.++. +               ..|.+.+...         +              ..... 
T Consensus       172 I~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v-  250 (441)
T d1qnia2         172 VIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEF-  250 (441)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSS-
T ss_pred             EecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCce-
Confidence            544432 2355666666554443 1               1222222100         0              00000 


Q ss_pred             EEEeCCCCCCCeEEEEccCCCEEE-EEeCCCcEEEEECCCCeEe--------EEeeecCCCCCccceEEECCCCCEEEEE
Q 021648          176 IFSVGGDISDANVVKFSNDGRLML-LTTMEGHIHVLDSFRGTLL--------STYNVKPVSRNSTLEASFSPEGMFVISG  246 (309)
Q Consensus       176 ~~~~~~~~~~~~~v~~s~dg~~l~-~~~~dg~v~i~d~~~~~~~--------~~~~~~~~~~~~~~~~~~sp~g~~l~s~  246 (309)
                      +..+-.. .....+.+||||++++ ++..+++|.+||..+....        ......+...-...-.+|.++|+-+.|.
T Consensus       251 ~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~  329 (441)
T d1qnia2         251 TRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTL  329 (441)
T ss_dssp             EEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEE
T ss_pred             EEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcc
Confidence            1111111 1235689999999865 5678999999997542210        0000111111112345899999999999


Q ss_pred             cCCCcEEEEECCC---------Cce-EEEe-----ecCCCCCcEEEECCCeeEEEEcc
Q 021648          247 SGDGSVYAWSVRS---------GKE-VASW-----MSFDTEPPVIKWTPGSLMFVTGS  289 (309)
Q Consensus       247 s~Dg~i~vwd~~~---------~~~-~~~~-----~~~~~~v~~l~~~p~~~~l~s~~  289 (309)
                      ..|..|..|++..         ... +..+     .+|...+.+..++|||++|++++
T Consensus       330 ~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         330 FIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             TTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             cccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            9999999999742         112 2223     57877788888999999999994

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.54  E-value=1.3e-13  Score=123.08  Aligned_cols=116  Identities=12%  Similarity=0.155  Sum_probs=90.4

Q ss_pred             EecCCCcceEEEEeCCCCCEEEEee---------CCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCC
Q 021648            6 SFRDYNGRISSMDFHKSSSYLVTAS---------DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   76 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~~~~~l~t~s---------~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   76 (309)
                      +|.+|...|.++.|||||++||.++         .++.+.|||+.+++ +..+..++..+....|+|+|+.+++..    
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~----  130 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW----  130 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE----
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEee----
Confidence            4566778999999999999999885         35678899999876 455777777889999999999999876    


Q ss_pred             CceeEEEEccCCceEEEeeec------------------ccCEEEEEecCCCCeEEEecCCCc-EEEee
Q 021648           77 DESLRLLSLHDNKYLRYFKGH------------------HDRVVSLSLCSSKDCFISGSLDRT-VLLWD  126 (309)
Q Consensus        77 d~~i~~~d~~~~~~~~~~~~h------------------~~~v~~v~~~~~~~~l~s~s~Dg~-v~~Wd  126 (309)
                      ++.+.+|+..+++.++....+                  .+...++.|+|||+.|+....|.+ ++.|+
T Consensus       131 ~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         131 NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence            678999999988766544322                  223456789999999999876644 55443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.44  E-value=6.1e-12  Score=109.83  Aligned_cols=249  Identities=10%  Similarity=0.065  Sum_probs=157.7

Q ss_pred             CCCcceEEEEeCCCCCEE-EEeeCCCcEEEEEcCCCceeeeeec-cccceeEEEEecCCCEEEEE--cCCCC----C---
Q 021648            9 DYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYS--SKNGW----D---   77 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l-~t~s~D~~v~iWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~--s~~g~----d---   77 (309)
                      .|--..+...++|||++| ++...+.+|.++|+.++++.+.+.- .......++|+++++..++.  +....    |   
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            355566777788999987 5556788999999999998876653 34457889999999854332  21100    0   


Q ss_pred             -------ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCC-------------------------------
Q 021648           78 -------ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-------------------------------  119 (309)
Q Consensus        78 -------~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D-------------------------------  119 (309)
                             ..+..+|.++.+....+.-. .....+.++|||+++.+++.+                               
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~  227 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK  227 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred             cccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence                   13355777777766555433 356788999999987766543                               


Q ss_pred             ----------CcEEEeeCCCceeeeeeeecCce-eEEECCCCcEEEEE--ECCEEEEEECCCCCc------CCceEEEeC
Q 021648          120 ----------RTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVA--FGGYIRMFDARKYEK------GPFDIFSVG  180 (309)
Q Consensus       120 ----------g~v~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~------~~~~~~~~~  180 (309)
                                +.+.+++....+....+.....+ .+..++++.++.++  .++++.+||+.+...      ........+
T Consensus       228 dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~  307 (441)
T d1qnia2         228 AGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE  307 (441)
T ss_dssp             TTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC
T ss_pred             CCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee
Confidence                      23344443333333333333322 35677888766655  478999999875321      000011111


Q ss_pred             CC-CCCCeEEEEccCCCEEEEEeCCCcEEEEECCC----------CeEeEEeeec--CCCCCccceEEECCCCCEEEEE-
Q 021648          181 GD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR----------GTLLSTYNVK--PVSRNSTLEASFSPEGMFVISG-  246 (309)
Q Consensus       181 ~~-~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~----------~~~~~~~~~~--~~~~~~~~~~~~sp~g~~l~s~-  246 (309)
                      .. .-...-.+|+++|..+.+...|.+|..|++..          ...+.....+  +.|...+...+|+|||+||+++ 
T Consensus       308 ~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         308 PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             cccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            00 01223357999999999999999999999631          1233333322  3455566778899999999999 


Q ss_pred             --cCCCc----------EEEEECC
Q 021648          247 --SGDGS----------VYAWSVR  258 (309)
Q Consensus       247 --s~Dg~----------i~vwd~~  258 (309)
                        |.|..          -.+.|+.
T Consensus       388 k~s~dr~~~~g~~~~~~~q~~~i~  411 (441)
T d1qnia2         388 KFSKDRFLPVGPLHPENDQLIDIS  411 (441)
T ss_dssp             SCCGGGSCCCSSSCCEEEEEEECS
T ss_pred             ccccccCcCCCCCCCccceeEEec
Confidence              77753          3567774

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.28  E-value=1.1e-08  Score=84.26  Aligned_cols=236  Identities=11%  Similarity=0.211  Sum_probs=154.6

Q ss_pred             eEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecc------ccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648           14 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   87 (309)
Q Consensus        14 V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~   87 (309)
                      -..|+++|+|+++++-...+.|++||.+ |+.+..+...      ......+++..+....++... +.+..|..++.. 
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~-  101 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER-SPTHQIQIYNQY-  101 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC-GGGCEEEEECTT-
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceecc-CCcccccccccc-
Confidence            5789999999999888888999999964 6766655321      112334555555555444432 235677777764 


Q ss_pred             CceEEEee-ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec----CceeEEECCCCcEEEEE-ECCEE
Q 021648           88 NKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVA-FGGYI  161 (309)
Q Consensus        88 ~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~i  161 (309)
                      ++....+. ........+++.++++.+++....+.+.+++.. ++....+...    ........+.+.++.+. ..+.|
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccce
Confidence            45454443 345667889999999988887777888888854 4443333211    11234556666655554 35789


Q ss_pred             EEEECCCCCcCCceEEEeC--CCCCCCeEEEEccCCCEEEEEeC-CCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648          162 RMFDARKYEKGPFDIFSVG--GDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  238 (309)
Q Consensus       162 ~~~d~~~~~~~~~~~~~~~--~~~~~~~~v~~s~dg~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp  238 (309)
                      ++||...    .+ +....  +.......++++|+|+++++-.. ++.|++|+. +|+.+.++.... .......+++.|
T Consensus       181 ~~~d~~G----~~-~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~-~~~~p~~vav~~  253 (279)
T d1q7fa_         181 KVFNYEG----QY-LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV-KHAQCFDVALMD  253 (279)
T ss_dssp             EEEETTC----CE-EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-CCSCEEEEEEET
T ss_pred             eeeecCC----ce-eeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCC-CCCCEeEEEEeC
Confidence            9998642    11 22222  33445678999999998888654 457999984 588777665432 223567899999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCc
Q 021648          239 EGMFVISGSGDGSVYAWSVRSGK  261 (309)
Q Consensus       239 ~g~~l~s~s~Dg~i~vwd~~~~~  261 (309)
                      ||+.+++ +.+..|++|......
T Consensus       254 dG~l~V~-~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         254 DGSVVLA-SKDYRLYIYRYVQLA  275 (279)
T ss_dssp             TTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CCcEEEE-eCCCeEEEEEeeeec
Confidence            9976554 578999999987654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.25  E-value=7.7e-09  Score=91.41  Aligned_cols=116  Identities=6%  Similarity=0.068  Sum_probs=92.6

Q ss_pred             EEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec-----cccceeEEEEecCCCEEEEEcCC------CCCceeEEE
Q 021648           15 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-----KKYGVDLVCFTSHPTTVIYSSKN------GWDESLRLL   83 (309)
Q Consensus        15 ~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~s~~------g~d~~i~~~   83 (309)
                      ..+.|.++++++..  .|+.+.+||+.+++....+..     +...+....|+||++++++++..      ..++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            35789999987764  478999999999988665543     34568899999999999887521      225678899


Q ss_pred             EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee
Q 021648           84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  134 (309)
Q Consensus        84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~  134 (309)
                      |+++++ +..+..|.+.+..+.|+|||+.++.. .|+.+.+|+..+++...
T Consensus        98 d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~  146 (470)
T d2bgra1          98 DLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR  146 (470)
T ss_dssp             ETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred             ECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceee
Confidence            999887 55688899999999999999999886 47899999988776543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=4.4e-08  Score=79.47  Aligned_cols=234  Identities=13%  Similarity=0.125  Sum_probs=134.7

Q ss_pred             cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeE
Q 021648           34 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF  113 (309)
Q Consensus        34 ~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l  113 (309)
                      .|.|-|.+ |...+.+..+...+..-+|+|||+.+++.+.......+.+.+...+.. ..+..+.+......|+|+++.+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCee
Confidence            45565765 444444444455677889999999999887655455666777766653 4555678888999999999987


Q ss_pred             EEecC-CCcEEEee--CCCceeeeeeeecCc-eeEEECCCCc-EEEEE-ECC--EEEEEECCCCCcCCceEEEeCCCCCC
Q 021648          114 ISGSL-DRTVLLWD--QRAEKCQGLLRVQGR-PAAAYDDQGL-VFAVA-FGG--YIRMFDARKYEKGPFDIFSVGGDISD  185 (309)
Q Consensus       114 ~s~s~-Dg~v~~Wd--~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~-~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~  185 (309)
                      +..+. ++...++.  ............... ........+. ++... .++  .|.+.++.....     ..+......
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-----~~~~~~~~~  172 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----QRITWEGSQ  172 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----EECCCSSSE
T ss_pred             eEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-----eeeeccccc
Confidence            76553 33322222  222221111111111 1222333333 22222 233  444545433211     111222233


Q ss_pred             CeEEEEccCCCEEEEEeCCC---cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcC---CCcEEEEECCC
Q 021648          186 ANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG---DGSVYAWSVRS  259 (309)
Q Consensus       186 ~~~v~~s~dg~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~---Dg~i~vwd~~~  259 (309)
                      .....++|+|+.++..+.++   .+.+.|...+..... .    .........|||||++|+-.+.   ...|+++++..
T Consensus       173 ~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~----~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         173 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-S----STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC-C----CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             ccccccccccceeEEEeecCCceeeeEeecccccceEe-e----cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            45568999999988876554   444555554443221 1    1233456789999999975543   34789999976


Q ss_pred             CceEEEeecCCCCCcEEEECC
Q 021648          260 GKEVASWMSFDTEPPVIKWTP  280 (309)
Q Consensus       260 ~~~~~~~~~~~~~v~~l~~~p  280 (309)
                      ++ ...+....+.+...+|||
T Consensus       248 ~~-~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         248 RF-KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CC-EEECCCSSSEEEEEEECC
T ss_pred             CC-EEEEeCCCCcEEeEEeCC
Confidence            54 445555566677788998

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.24  E-value=1.5e-08  Score=84.92  Aligned_cols=258  Identities=11%  Similarity=0.117  Sum_probs=149.8

Q ss_pred             ceEEEEeCCCCCEEEEeeC-------CCcEEEEEcCCCceeeeeecc----ccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648           13 RISSMDFHKSSSYLVTASD-------DESIRLYDVTAATCLKTINSK----KYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~-------D~~v~iWd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      ....++|+|+|++.++...       +++|..||..++.........    ......++|.++++.++++..   ...+.
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~---~~~i~   95 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---RLGLL   95 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---TTEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC---CCeEE
Confidence            3567889999998876432       467888898877543322211    112456889998887766542   34577


Q ss_pred             EEEccCCceEEEeeecc----cCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEE
Q 021648           82 LLSLHDNKYLRYFKGHH----DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF  157 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~----~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (309)
                      ..|...+..........    ...+.+.+.++|+..+|-.. +....|+....       ...       +.+.++....
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~-~~~~~~~~~~~-------~~~-------~~G~v~~~~~  160 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA-GEVAPADYTRS-------MQE-------KFGSIYCFTT  160 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECB-CBCTTSCCCBT-------TSS-------SCEEEEEECT
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCc-cCcccccccce-------ecc-------CCceEEEEee
Confidence            88876554222111111    13567888888876665321 11111111000       000       0111111111


Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCC-----EEEEEeCCCcEEEEECCCCeEeEE---ee-ecCCCC
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-----LMLLTTMEGHIHVLDSFRGTLLST---YN-VKPVSR  228 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-----~l~~~~~dg~v~i~d~~~~~~~~~---~~-~~~~~~  228 (309)
                      ++.+....               ......+.++++|++.     ++++-+..+.|..||+.....+..   +. ......
T Consensus       161 dg~~~~~~---------------~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  225 (314)
T d1pjxa_         161 DGQMIQVD---------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             TSCEEEEE---------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             cCceeEee---------------CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc
Confidence            12111110               0011236788988774     666677889999998654322221   11 111111


Q ss_pred             CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCee-EEEEccceEEEeeecCCCcc
Q 021648          229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGSSELSFWIPDLSKLG  303 (309)
Q Consensus       229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~~~d~~~~~~~~~~~~  303 (309)
                      ...-.+++.++|+.+++....+.|.+||.+.++.+..+......+++++|.|+++ ++++.+...++|..++...|
T Consensus       226 ~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             ccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            2234688999999988888889999999988776666655555778999999985 77887777888877765555

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.21  E-value=2.4e-08  Score=83.07  Aligned_cols=227  Identities=11%  Similarity=0.041  Sum_probs=142.5

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce-E
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-L   91 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~-~   91 (309)
                      -+..++++|||++++|...+++|..||.. ++ ...+......+..++|.++++.+++...   ++.+..++...... .
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~---~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWN---ADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEEC---TTSCEEEEEECTTSCE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecC---CceEEEEEecccccce
Confidence            47889999999999999999999888865 33 2333334456788999999986665543   45677777654321 2


Q ss_pred             EEee--ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec------------CceeEEECCCCcEEEEEE
Q 021648           92 RYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ------------GRPAAAYDDQGLVFAVAF  157 (309)
Q Consensus        92 ~~~~--~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~  157 (309)
                      ..+.  ......+.+.+.++++++++-+.++.+..+|...+.........            ............+++...
T Consensus       104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~  183 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE  183 (302)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT
T ss_pred             eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCC
Confidence            2222  23456889999999999999898999988887765432211100            011223333333333334


Q ss_pred             CCEEEEEECCCCCc-CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648          158 GGYIRMFDARKYEK-GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  236 (309)
Q Consensus       158 ~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      .+.|..++...... .........   .....++++++|+++++...++.|..++.. ++........ ........++|
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~~~---~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~-~~~~~pt~vaf  258 (302)
T d2p4oa1         184 KMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-QGVIGSTAVAF  258 (302)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-GTCTTEEEEEE
T ss_pred             CCeEEeccccccccccccccccCC---CCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecC-CCCCCceEEEE
Confidence            67888887653221 111111111   223468999999999988889999999875 3332222221 12234567999


Q ss_pred             ---CCCCCEEEEEcCC
Q 021648          237 ---SPEGMFVISGSGD  249 (309)
Q Consensus       237 ---sp~g~~l~s~s~D  249 (309)
                         +||++.|+.++..
T Consensus       259 g~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         259 GQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CCSTTTTTEEEEEECT
T ss_pred             cCCCCCCCEEEEECCC
Confidence               7788888766544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.20  E-value=9.4e-09  Score=88.12  Aligned_cols=253  Identities=11%  Similarity=0.043  Sum_probs=136.2

Q ss_pred             CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecc--ccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648           10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK--KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   87 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~   87 (309)
                      ....++-|+|+|++++|.++.. +.+..|.+.....+.....+  ......++++++++.++....+...+++..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            3455678999999999877754 56777766532222222111  12234567777777554433222244454443321


Q ss_pred             -CceE------------EE----eeecccCEEEEEecCCCCeEEEecC-CCcEEEeeCCCceeeeeeeecCceeEEECCC
Q 021648           88 -NKYL------------RY----FKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ  149 (309)
Q Consensus        88 -~~~~------------~~----~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~  149 (309)
                       +...            ..    -.+....+.++.|+|||++++.+.. ...|.+|+.........              
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~--------------  182 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL--------------  182 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE--------------
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceee--------------
Confidence             1110            00    1112234678899999987766642 34566655332110000              


Q ss_pred             CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEE-EEEeCCCcEEEEECCCCeEeE--EeeecCC
Q 021648          150 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLS--TYNVKPV  226 (309)
Q Consensus       150 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l-~~~~~dg~v~i~d~~~~~~~~--~~~~~~~  226 (309)
                           ..                   ...........+.++|+|+|+++ ++...+++|.+|+...+....  .....+.
T Consensus       183 -----~~-------------------~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~  238 (365)
T d1jofa_         183 -----VG-------------------SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL  238 (365)
T ss_dssp             -----EE-------------------EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred             -----cc-------------------ceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecc
Confidence                 00                   00000111345778999999976 555678999999986654322  1111000


Q ss_pred             --------------CCCccceEEECCCCCEEEEEcC------CCcEEEEECCCCceEEEe------ecCCCCCcEEEECC
Q 021648          227 --------------SRNSTLEASFSPEGMFVISGSG------DGSVYAWSVRSGKEVASW------MSFDTEPPVIKWTP  280 (309)
Q Consensus       227 --------------~~~~~~~~~~sp~g~~l~s~s~------Dg~i~vwd~~~~~~~~~~------~~~~~~v~~l~~~p  280 (309)
                                    .......+.++|||++|+++..      .+.|..|++.....+...      .........++++|
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p  318 (365)
T d1jofa_         239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCP  318 (365)
T ss_dssp             SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECT
T ss_pred             ccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecC
Confidence                          0112335789999999988732      224778887653322211      12334567899998


Q ss_pred             -CeeEEEEcc-c--eEEEeeecCCC
Q 021648          281 -GSLMFVTGS-S--ELSFWIPDLSK  301 (309)
Q Consensus       281 -~~~~l~s~~-~--d~~~~~~~~~~  301 (309)
                       +|++|+.+. .  ++.+|..+...
T Consensus       319 ~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         319 WSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             TCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCCCEEEEEeCCCCeEEEEEEeCCc
Confidence             787654443 3  37888665543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=1.4e-08  Score=82.72  Aligned_cols=241  Identities=10%  Similarity=0.086  Sum_probs=142.3

Q ss_pred             EecCCCc--ceEEEEeCCCCCEEEEe-eCCCcEEEEEcCCCcee-eeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648            6 SFRDYNG--RISSMDFHKSSSYLVTA-SDDESIRLYDVTAATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus         6 ~~~~h~~--~V~~i~~s~~~~~l~t~-s~D~~v~iWd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      .|.+++.  .-.+|+++++|++.++. +..+.+..++..+.... ....+ ......+++.+++...++..   ..+.++
T Consensus         6 ~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g~i~v~d~---~~~~i~   81 (260)
T d1rwia_           6 PFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDF---NNRVVT   81 (260)
T ss_dssp             CCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTCCEEEEET---TTEEEE
T ss_pred             ecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCCCEEEeee---eeceee
Confidence            3445443  34799999999976654 45567777765433222 22222 22356778888876544432   245666


Q ss_pred             EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEE
Q 021648           82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI  161 (309)
Q Consensus        82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (309)
                      +++-.++..+....+ .....++++.++++.+++-.....+...+...... ..                          
T Consensus        82 ~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-~~--------------------------  133 (260)
T d1rwia_          82 LAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TV--------------------------  133 (260)
T ss_dssp             ECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-EE--------------------------
T ss_pred             eeeeccceeeeeeee-eeecccccccccceeEeecccccccccccccccee-ee--------------------------
Confidence            665555544433322 34567888888877666544444444443321100 00                          


Q ss_pred             EEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648          162 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  241 (309)
Q Consensus       162 ~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~  241 (309)
                                     ... ........++++|+|+++++...++.|..+|........ +..  ........+++.++|+
T Consensus       134 ---------------~~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~-~~~--~~~~~p~gi~~d~~g~  194 (260)
T d1rwia_         134 ---------------LPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-LPF--TDITAPWGIAVDEAGT  194 (260)
T ss_dssp             ---------------CCC-CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-CCC--SSCCSEEEEEECTTCC
T ss_pred             ---------------eee-cccCCcceeeecCCCCEeeeccccccccccccccceeee-eec--cccCCCccceeeeeee
Confidence                           000 001223578999999999888889999999976544332 211  1223456789999999


Q ss_pred             EEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648          242 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP  297 (309)
Q Consensus       242 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~  297 (309)
                      .+++-...+.|..++.............-..+..|++++++.++++-....+++..
T Consensus       195 l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         195 VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             EEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             eeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            99999888999988875543211111112356789999999988886666666644

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.06  E-value=1.8e-06  Score=72.07  Aligned_cols=247  Identities=8%  Similarity=0.100  Sum_probs=143.5

Q ss_pred             ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE--EccCCce
Q 021648           13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL--SLHDNKY   90 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~--d~~~~~~   90 (309)
                      .+..+.|+++|++.++-...+.|..||.++++....+.........+++.+++..+++.. ++......++  +...+..
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~-~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYL-GDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEEC-TTSSSCCEEEEECTTSCSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEec-CCCccceeEEEEcCCCcee
Confidence            456899999999888888899999999877665555544444567889999987655443 2333333444  4444443


Q ss_pred             EEEeee--cccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCC
Q 021648           91 LRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK  168 (309)
Q Consensus        91 ~~~~~~--h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  168 (309)
                      ......  -....+.+.+.++|++.++-.....       ...        ......+.+++.        .+....   
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~-------~~~--------~g~v~~~~~dg~--------~~~~~~---  173 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS-------TNP--------LGGVYYVSPDFR--------TVTPII---  173 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBT-------TBC--------CEEEEEECTTSC--------CEEEEE---
T ss_pred             eeeccCCCcccCCcceeEEeccceeeccccccc-------ccC--------cceeEEEecccc--------eeEEEe---
Confidence            322221  1234677888888876665321100       000        000001111111        011000   


Q ss_pred             CCcCCceEEEeCCCCCCCeEEEEccCCCE-EEEEeCCCcEEEEECCC-CeEeEEe----eecCCCCCccceEEECCCCCE
Q 021648          169 YEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFR-GTLLSTY----NVKPVSRNSTLEASFSPEGMF  242 (309)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~-l~~~~~dg~v~i~d~~~-~~~~~~~----~~~~~~~~~~~~~~~sp~g~~  242 (309)
                              ..    ....+.++++||++. +++-+..++|+.||+.. +......    ..........-.+++.++|+.
T Consensus       174 --------~~----~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l  241 (319)
T d2dg1a1         174 --------QN----ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL  241 (319)
T ss_dssp             --------EE----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE
T ss_pred             --------ec----cceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCE
Confidence                    00    112367899999975 46667789999998753 2222111    111111122346899999999


Q ss_pred             EEEEcCCCcEEEEECCCCceEEEee------cCCCCCcEEEECCCeeEE-EEccc-----eEEEeeecC
Q 021648          243 VISGSGDGSVYAWSVRSGKEVASWM------SFDTEPPVIKWTPGSLMF-VTGSS-----ELSFWIPDL  299 (309)
Q Consensus       243 l~s~s~Dg~i~vwd~~~~~~~~~~~------~~~~~v~~l~~~p~~~~l-~s~~~-----d~~~~~~~~  299 (309)
                      .++....+.|.+||- +++.+..+.      ++...+++++|.|+...+ ++...     ...+|..+.
T Consensus       242 ~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         242 YVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             EEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             EEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence            898888999999995 688877653      233457899999976544 44321     256665544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.88  E-value=6.6e-07  Score=74.10  Aligned_cols=221  Identities=11%  Similarity=0.006  Sum_probs=132.0

Q ss_pred             ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCce--e
Q 021648           55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK--C  132 (309)
Q Consensus        55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~--~  132 (309)
                      .+..+++.++++.+++...   +++|..+|....  ...+......+.+++|.+||+.+++...++.+..|+.....  .
T Consensus        29 ~~e~iAv~pdG~l~vt~~~---~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHE---VGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CEEEEEECTTSCEEEEETT---TTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcCCEEECCCCCEEEEeCC---CCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce
Confidence            4678899999986655432   677888875543  44556677889999999999988888888888877754321  1


Q ss_pred             eeeeeec---CceeEEECCCCcEEEEEE-CCEEEEEECCCCCcCCceEEEe---------CCCCCCCeEEEEccCCCEEE
Q 021648          133 QGLLRVQ---GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSV---------GGDISDANVVKFSNDGRLML  199 (309)
Q Consensus       133 ~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~~v~~s~dg~~l~  199 (309)
                      .......   ........+++.++.... .+.+..+|.....   ..+...         .......+.+.++. +.+++
T Consensus       104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~  179 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS---GSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYV  179 (302)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE---EEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEE
T ss_pred             eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCc---ceeEecCCccceeeccCcccccccccccC-Cceee
Confidence            1111111   122345666676665543 4667666654321   111111         11112334555543 34566


Q ss_pred             EEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc-eEEEeecCCCCCcEEEE
Q 021648          200 LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKW  278 (309)
Q Consensus       200 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~  278 (309)
                      +.+..+.|+.++............. ......-.++|.++|+.+++...++.|..++..... .+.+....-..+++++|
T Consensus       180 ~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vaf  258 (302)
T d2p4oa1         180 SNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAF  258 (302)
T ss_dssp             EETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEE
T ss_pred             ecCCCCeEEeccccccccccccccc-cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEE
Confidence            6777889998887543322211110 011233468999999998888889999999875432 13333223345789999


Q ss_pred             ---CCCeeEE
Q 021648          279 ---TPGSLMF  285 (309)
Q Consensus       279 ---~p~~~~l  285 (309)
                         +||++.|
T Consensus       259 g~~~~D~~~L  268 (302)
T d2p4oa1         259 GQTEGDCTAI  268 (302)
T ss_dssp             CCSTTTTTEE
T ss_pred             cCCCCCCCEE
Confidence               6676543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.86  E-value=1.4e-06  Score=74.10  Aligned_cols=180  Identities=11%  Similarity=0.120  Sum_probs=102.7

Q ss_pred             ceeEEEEecCCCEEEEEcCCCCCceeEEEEccC-CceE--EEee--ecccCEEEEEecCCCCeE-EEecCCCcEEEeeCC
Q 021648           55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYL--RYFK--GHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQR  128 (309)
Q Consensus        55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~-~~~~--~~~~--~h~~~v~~v~~~~~~~~l-~s~s~Dg~v~~Wd~~  128 (309)
                      .+..++|+|++++++++.. | ...|.+|+... ++..  ....  ......+.+.|+|+++++ ++.-.+++|.+|++.
T Consensus       146 h~h~v~~sPdG~~l~v~d~-g-~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADL-T-ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CEEEEEECTTSSEEEEEET-T-TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEECCCCCEEEEeeC-C-CCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            3678999999999888764 3 45788887644 3221  1121  234578999999999976 556678999999976


Q ss_pred             CceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC-C---
Q 021648          129 AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-E---  204 (309)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~-d---  204 (309)
                      .++.........                    +.++.........    ...........+.++|||+++.++.. +   
T Consensus       224 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~----~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~  279 (365)
T d1jofa_         224 PATHMPVYTHHS--------------------FPLIPPGIPDRDP----ETGKGLYRADVCALTFSGKYMFASSRANKFE  279 (365)
T ss_dssp             TTTCCEEEEEEE--------------------EESSCTTCCCBCT----TTSSBSEEEEEEEECTTSSEEEEEEEESSTT
T ss_pred             CCCceEEEEeee--------------------ecccccccccccc----ccccccCCccceEECCCCCEEEEEcccCCCc
Confidence            554322211110                    0000000000000    00000112346789999998876532 2   


Q ss_pred             --CcEEEEECCC-CeEeEEee--ecCCCCCccceEEECC-CCCEEEEE-cCCCcEEEEECCCC
Q 021648          205 --GHIHVLDSFR-GTLLSTYN--VKPVSRNSTLEASFSP-EGMFVISG-SGDGSVYAWSVRSG  260 (309)
Q Consensus       205 --g~v~i~d~~~-~~~~~~~~--~~~~~~~~~~~~~~sp-~g~~l~s~-s~Dg~i~vwd~~~~  260 (309)
                        +.|..|+... +.+.....  ...........++++| +|++|+.+ ..++.|.+|++...
T Consensus       280 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         280 LQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence              2377777644 22222111  1111223456789998 89988777 56789999988554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.80  E-value=1.9e-05  Score=64.26  Aligned_cols=231  Identities=10%  Similarity=0.148  Sum_probs=139.8

Q ss_pred             eeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeee------cccCEEEEEecCCC-CeEE-EecCCCcEEEeeC
Q 021648           56 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG------HHDRVVSLSLCSSK-DCFI-SGSLDRTVLLWDQ  127 (309)
Q Consensus        56 v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~------h~~~v~~v~~~~~~-~~l~-s~s~Dg~v~~Wd~  127 (309)
                      ...+++.++++.+++-.   .++.|++||.+ ++.+..+..      .......+.+.++. ..++ ..+.++.|..++.
T Consensus        25 P~gvavd~dg~i~VaD~---~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADT---NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             EEEEEECTTCCEEEEEG---GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             ccEEEEcCCCCEEEEEC---CCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence            45778888877444422   26789999865 565655532      12234556655543 3333 3455667878775


Q ss_pred             CCceeeeeeeec---CceeEEECCCCcEEEEEE-CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC
Q 021648          128 RAEKCQGLLRVQ---GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM  203 (309)
Q Consensus       128 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~  203 (309)
                      . +.....+...   .....+..+.+.++.+.. .+.+.+++...   .....+....+......++++++|+.+++...
T Consensus       101 ~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g---~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~  176 (279)
T d1q7fa_         101 Y-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG---NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  176 (279)
T ss_dssp             T-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS---CEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             c-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC---ceeecccccccccccceeeeccceeEEeeecc
Confidence            3 4333333211   112345555555554443 45666666421   11112222334455678899999999999999


Q ss_pred             CCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcC-CCcEEEEECCCCceEEEeecC--CCCCcEEEECC
Q 021648          204 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DGSVYAWSVRSGKEVASWMSF--DTEPPVIKWTP  280 (309)
Q Consensus       204 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~--~~~v~~l~~~p  280 (309)
                      .+.|++||. +++.+.++... ........+++.|+|+.+++-+. ++.|.+|+. +++.+.++...  ...+..|++.|
T Consensus       177 ~~~V~~~d~-~G~~~~~~g~~-g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~  253 (279)
T d1q7fa_         177 AHCVKVFNY-EGQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD  253 (279)
T ss_dssp             GTEEEEEET-TCCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred             ccceeeeec-CCceeeeeccc-ccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeC
Confidence            999999996 46666665322 22334567899999998877544 457999985 68877776432  23567899999


Q ss_pred             CeeEEEEccc-eEEEeee
Q 021648          281 GSLMFVTGSS-ELSFWIP  297 (309)
Q Consensus       281 ~~~~l~s~~~-d~~~~~~  297 (309)
                      +++++++... .+++|..
T Consensus       254 dG~l~V~~~n~~v~~fr~  271 (279)
T d1q7fa_         254 DGSVVLASKDYRLYIYRY  271 (279)
T ss_dssp             TTEEEEEETTTEEEEEEC
T ss_pred             CCcEEEEeCCCeEEEEEe
Confidence            9987776432 2555543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=4.7e-06  Score=67.04  Aligned_cols=221  Identities=8%  Similarity=0.069  Sum_probs=117.9

Q ss_pred             EecCCCcceEEEEeCCCCCEEEEeeCCC---cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648            6 SFRDYNGRISSMDFHKSSSYLVTASDDE---SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   82 (309)
Q Consensus         6 ~~~~h~~~V~~i~~s~~~~~l~t~s~D~---~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~   82 (309)
                      .+..+...+.+-+|||||+.||=...+.   .+.+.+..++.. +.+..+........++|++..++..+.......+..
T Consensus        33 ~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~  111 (269)
T d2hqsa1          33 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV  111 (269)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceee
Confidence            3444567778899999999998554433   344556555443 333334445677889999998887664322223333


Q ss_pred             EEccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEe--eCCCceeeeeeeecC-ceeEEECCCCcEEEE-EE
Q 021648           83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLW--DQRAEKCQGLLRVQG-RPAAAYDDQGLVFAV-AF  157 (309)
Q Consensus        83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~W--d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~  157 (309)
                      +......... ...+........++++++ .+++...++...+|  +.............. ......++++..+.. ..
T Consensus       112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  190 (269)
T d2hqsa1         112 MDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS  190 (269)
T ss_dssp             EETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             ccccccccee-eeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEee
Confidence            3333333222 223334444555666665 44455556644444  444433222211111 123455666654443 33


Q ss_pred             C-C--EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC---CCcEEEEECCCCeEeEEeeecCCCCCcc
Q 021648          158 G-G--YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGTLLSTYNVKPVSRNST  231 (309)
Q Consensus       158 ~-~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~  231 (309)
                      + +  .+.+.+....   ...   ............|||||+.|+..+.   ...++++++..+.... +..   ....+
T Consensus       191 ~~~~~~i~~~~~~~~---~~~---~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~---~~g~~  260 (269)
T d2hqsa1         191 NGGQQHIAKQDLATG---GVQ---VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LPA---TDGQV  260 (269)
T ss_dssp             CSSCEEEEEEETTTC---CEE---ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CCC---SSSEE
T ss_pred             cCCceeeeEeecccc---cce---EeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-EeC---CCCcE
Confidence            3 3  3444444321   111   1122234567789999999886554   3478899987665433 221   23445


Q ss_pred             ceEEECC
Q 021648          232 LEASFSP  238 (309)
Q Consensus       232 ~~~~~sp  238 (309)
                      ...+|||
T Consensus       261 ~~p~WSP  267 (269)
T d2hqsa1         261 KFPAWSP  267 (269)
T ss_dssp             EEEEECC
T ss_pred             EeEEeCC
Confidence            5678988

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.76  E-value=5.7e-06  Score=68.77  Aligned_cols=205  Identities=9%  Similarity=0.127  Sum_probs=118.4

Q ss_pred             eEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeee---ecccc-ceeEEEEecCCCEEEEEcCCC----------CCce
Q 021648           14 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI---NSKKY-GVDLVCFTSHPTTVIYSSKNG----------WDES   79 (309)
Q Consensus        14 V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~---~~~~~-~v~~~~~~~~~~~~~~~s~~g----------~d~~   79 (309)
                      -..+.|+++++++..+...+.+...|.+.+......   .+... ....+++.+++...++.+...          ....
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            346999999998888877778888887654322111   11111 245688888886555432110          0111


Q ss_pred             eEEEEcc-CCceEEEeeecccCEEEEEecCCCC-----eEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEE
Q 021648           80 LRLLSLH-DNKYLRYFKGHHDRVVSLSLCSSKD-----CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF  153 (309)
Q Consensus        80 i~~~d~~-~~~~~~~~~~h~~~v~~v~~~~~~~-----~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (309)
                      -++|-+. .++... +.......+.++|+|+++     ..++-+..+.|..+|+.........                 
T Consensus       153 G~v~~~~~dg~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~-----------------  214 (314)
T d1pjxa_         153 GSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-----------------  214 (314)
T ss_dssp             EEEEEECTTSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-----------------
T ss_pred             ceEEEEeecCceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee-----------------
Confidence            2333332 233222 233344456778877654     3444455666666654321111000                 


Q ss_pred             EEEECCEEEEE-ECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccc
Q 021648          154 AVAFGGYIRMF-DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  232 (309)
Q Consensus       154 ~~~~~~~i~~~-d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  232 (309)
                              +++ ++..            ........+++.++|+++++....+.|.+||...+..+..+...   .....
T Consensus       215 --------~~~~~~~~------------~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p---~~~~t  271 (314)
T d1pjxa_         215 --------KVWGHIPG------------THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP---FEKPS  271 (314)
T ss_dssp             --------EEEEECCC------------CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS---SSCEE
T ss_pred             --------eEEEEccc------------cccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECC---CCCEE
Confidence                    000 0000            00011246789999999999888999999998877766655532   23456


Q ss_pred             eEEECCCCCE-EEEEcCCCcEEEEECCC
Q 021648          233 EASFSPEGMF-VISGSGDGSVYAWSVRS  259 (309)
Q Consensus       233 ~~~~sp~g~~-l~s~s~Dg~i~vwd~~~  259 (309)
                      +++|.||++. ++|.+.++.|...++..
T Consensus       272 ~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         272 NLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            7999999974 46667788888888743

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.66  E-value=2.9e-06  Score=68.50  Aligned_cols=194  Identities=8%  Similarity=0.072  Sum_probs=120.0

Q ss_pred             eEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648           14 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY   93 (309)
Q Consensus        14 V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~   93 (309)
                      ...++++++|+++++....+.+++++..++..+....... ....+++.++++..+.-..   +..+..++.........
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~-~p~~iavd~~g~i~v~d~~---~~~~~~~~~~~~~~~~~  134 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLN-YPEGLAVDTQGAVYVADRG---NNRVVKLAAGSKTQTVL  134 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCC-SEEEEEECTTCCEEEEEGG---GTEEEEECTTCSSCEEC
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeee-ecccccccccceeEeeccc---cccccccccccceeeee
Confidence            4678899999998888777777777655555444433322 3567788887765444322   34565665544332221


Q ss_pred             eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCC
Q 021648           94 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGP  173 (309)
Q Consensus        94 ~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  173 (309)
                      ...-.....++++.++++.+++...++.|..+|.+...... +.                                    
T Consensus       135 ~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~-~~------------------------------------  177 (260)
T d1rwia_         135 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-LP------------------------------------  177 (260)
T ss_dssp             CCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-CC------------------------------------
T ss_pred             eecccCCcceeeecCCCCEeeeccccccccccccccceeee-ee------------------------------------
Confidence            11223455788888888888887777888888765432110 00                                    


Q ss_pred             ceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEE
Q 021648          174 FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY  253 (309)
Q Consensus       174 ~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~  253 (309)
                            .........++++++|+++++...++.|..++..... ...+..  ..-.....++++++|+.+++-..++.|+
T Consensus       178 ------~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~--~~~~~P~~i~~d~~g~l~vad~~~~rI~  248 (260)
T d1rwia_         178 ------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPF--TGLNTPLAVAVDSDRTVYVADRGNDRVV  248 (260)
T ss_dssp             ------CSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCC--CSCCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             ------ccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEcc--CCCCCeEEEEEeCCCCEEEEECCCCEEE
Confidence                  0011223578899999999988888999888765432 222211  1123456789999998888767667666


Q ss_pred             EEEC
Q 021648          254 AWSV  257 (309)
Q Consensus       254 vwd~  257 (309)
                      ..+.
T Consensus       249 ~i~~  252 (260)
T d1rwia_         249 KLTS  252 (260)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            5444

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=4.7e-05  Score=66.62  Aligned_cols=109  Identities=8%  Similarity=0.105  Sum_probs=72.7

Q ss_pred             ceEEEEeCCCCCEEEEe---------eCCCcEEEEEcCCCceeee--eeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648           13 RISSMDFHKSSSYLVTA---------SDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   81 (309)
Q Consensus        13 ~V~~i~~s~~~~~l~t~---------s~D~~v~iWd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~   81 (309)
                      .+....||||+++++-.         +..+.+-|+|+.+++....  .......+....|+|+|+.+++..    ++.+.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~----~~nl~  137 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF----ENNIY  137 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE----TTEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe----cceEE
Confidence            56677899999987765         3456788999988765332  222333455678999999998886    56788


Q ss_pred             EEEccCCceEEEee-ecccCE-----------------EEEEecCCCCeEEEecC-CCcEEEe
Q 021648           82 LLSLHDNKYLRYFK-GHHDRV-----------------VSLSLCSSKDCFISGSL-DRTVLLW  125 (309)
Q Consensus        82 ~~d~~~~~~~~~~~-~h~~~v-----------------~~v~~~~~~~~l~s~s~-Dg~v~~W  125 (309)
                      +.+..+++.++... +-.+.|                 .++.|+|||+.|+.... |..+..+
T Consensus       138 ~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~  200 (465)
T d1xfda1         138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIM  200 (465)
T ss_dssp             EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEE
T ss_pred             EEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEeccccccee
Confidence            88877665443332 222222                 46779999999887753 3334443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.48  E-value=0.0002  Score=59.13  Aligned_cols=203  Identities=11%  Similarity=0.113  Sum_probs=117.3

Q ss_pred             cCCCcceEEEEeCCCCCEEEEeeCC--CcEEEEEc--CCCceeeeeec--cccceeEEEEecCCCEEEEEcCCCC----C
Q 021648            8 RDYNGRISSMDFHKSSSYLVTASDD--ESIRLYDV--TAATCLKTINS--KKYGVDLVCFTSHPTTVIYSSKNGW----D   77 (309)
Q Consensus         8 ~~h~~~V~~i~~s~~~~~l~t~s~D--~~v~iWd~--~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~s~~g~----d   77 (309)
                      ....+....++|++||+++++...|  ...+++.+  .++........  .......+++.+++...+... .+.    .
T Consensus        78 ~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~-~~~~~~~~  156 (319)
T d2dg1a1          78 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDF-RGYSTNPL  156 (319)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEEC-CCBTTBCC
T ss_pred             eCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeeccc-ccccccCc
Confidence            3445567889999999988765443  33444443  33333222221  123356788888887544432 111    1


Q ss_pred             ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeE-EEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEE
Q 021648           78 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA  156 (309)
Q Consensus        78 ~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (309)
                      +.+..++...+. +..+...-...+.++|+|+++.| ++-+..+.|..+|+..........  ..               
T Consensus       157 g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~--~~---------------  218 (319)
T d2dg1a1         157 GGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF--GA---------------  218 (319)
T ss_dssp             EEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE--EE---------------
T ss_pred             ceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccc--cc---------------
Confidence            234444444333 33333344556889999999855 666778888888765321100000  00               


Q ss_pred             ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecC---CCCCccce
Q 021648          157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP---VSRNSTLE  233 (309)
Q Consensus       157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---~~~~~~~~  233 (309)
                          .....             .. .......+++.++|++.++...++.|.+||. .|+.+.++....   .+...+.+
T Consensus       219 ----~~~~~-------------~~-~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~  279 (319)
T d2dg1a1         219 ----TIPYY-------------FT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTH  279 (319)
T ss_dssp             ----EEEEE-------------CC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCE
T ss_pred             ----eeeec-------------cC-CccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeee
Confidence                00000             00 0011235789999999999999999999996 688888776532   12234568


Q ss_pred             EEECCCCCEEEEEcC
Q 021648          234 ASFSPEGMFVISGSG  248 (309)
Q Consensus       234 ~~~sp~g~~l~s~s~  248 (309)
                      ++|.|++..+++.+.
T Consensus       280 ~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         280 PQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEECTTSCEEEEEEE
T ss_pred             EEEeCCCCEEEEEcC
Confidence            899998877766544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=0.00014  Score=63.62  Aligned_cols=256  Identities=13%  Similarity=0.126  Sum_probs=133.1

Q ss_pred             CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccc-cc-----------------eeEEEEecCCCEEEEEc
Q 021648           11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-YG-----------------VDLVCFTSHPTTVIYSS   72 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~-~~-----------------v~~~~~~~~~~~~~~~s   72 (309)
                      .+.+....|||||+.+|=.. ++.|.+.+..++..++...... ..                 -..+.|+|+++++++..
T Consensus       113 ~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         113 NAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             SCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            34456688999999988764 6788888887766655432211 10                 13567899999988764


Q ss_pred             CCCC-------------------------------CceeEEEEccCCceEEEe------eecccCEEEEEecCCCCeEEE
Q 021648           73 KNGW-------------------------------DESLRLLSLHDNKYLRYF------KGHHDRVVSLSLCSSKDCFIS  115 (309)
Q Consensus        73 ~~g~-------------------------------d~~i~~~d~~~~~~~~~~------~~h~~~v~~v~~~~~~~~l~s  115 (309)
                      .+.-                               ...+.++|++++......      .....-+..+.|+++++.++.
T Consensus       192 ~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~  271 (465)
T d1xfda1         192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVT  271 (465)
T ss_dssp             EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred             ecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEE
Confidence            2100                               014556676655432211      112224677899999886655


Q ss_pred             ecC-C---CcEEEeeCCCceeeeeeeecC-------ceeEEECCCCc-E-EE-EE-ECC--EEEEEECCCCC--cCCceE
Q 021648          116 GSL-D---RTVLLWDQRAEKCQGLLRVQG-------RPAAAYDDQGL-V-FA-VA-FGG--YIRMFDARKYE--KGPFDI  176 (309)
Q Consensus       116 ~s~-D---g~v~~Wd~~~~~~~~~~~~~~-------~~~~~~~~~~~-~-~~-~~-~~~--~i~~~d~~~~~--~~~~~~  176 (309)
                      ... +   ..+.++|..++++...+....       .....+.+++. + +. .. .++  .+...++....  ......
T Consensus       272 ~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~  351 (465)
T d1xfda1         272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI  351 (465)
T ss_dssp             EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC
T ss_pred             EEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCcee
Confidence            432 2   267788988887665443211       11234444443 2 11 11 122  23333221100  000000


Q ss_pred             EEeCCCCCCCeE-EEEccCCCEEE-EEeCC----CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC-
Q 021648          177 FSVGGDISDANV-VKFSNDGRLML-LTTME----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-  249 (309)
Q Consensus       177 ~~~~~~~~~~~~-v~~s~dg~~l~-~~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D-  249 (309)
                      ..+....-.|.. +.++++++.+. ++..+    .+++-.++..+.....+............+.|||+|++++-.... 
T Consensus       352 ~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~  431 (465)
T d1xfda1         352 QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP  431 (465)
T ss_dssp             CBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred             EEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecC
Confidence            011111112333 46788776654 33332    234444444332222111111122234578999999999844332 


Q ss_pred             --CcEEEEECCCCceEEEee
Q 021648          250 --GSVYAWSVRSGKEVASWM  267 (309)
Q Consensus       250 --g~i~vwd~~~~~~~~~~~  267 (309)
                        -.+++++..+++.+..+.
T Consensus       432 ~~P~~~~~~~~~~~~~~~Le  451 (465)
T d1xfda1         432 GVPMVTVHNTTDKKKMFDLE  451 (465)
T ss_dssp             SSCCEEEEETTTCCEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEc
Confidence              478899988888887764

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.26  E-value=0.00053  Score=54.58  Aligned_cols=97  Identities=10%  Similarity=0.020  Sum_probs=62.8

Q ss_pred             EeCCC--CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcC-CCCC--ceeEEEEccCCceEE
Q 021648           18 DFHKS--SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-NGWD--ESLRLLSLHDNKYLR   92 (309)
Q Consensus        18 ~~s~~--~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~-~g~d--~~i~~~d~~~~~~~~   92 (309)
                      ..+||  |+.+|=.+ ++.|-+.|+.+++..+ +..+...+...+|+|||+.+++... ++.+  ..+.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEE-EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  98887554 4456666888777544 4444455677899999999987642 2222  346677777776543


Q ss_pred             Eee------ecccCEEEEEecCCCCeEEEe
Q 021648           93 YFK------GHHDRVVSLSLCSSKDCFISG  116 (309)
Q Consensus        93 ~~~------~h~~~v~~v~~~~~~~~l~s~  116 (309)
                      ...      ..........|+||++.++..
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEE
Confidence            211      122345677899999987764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.19  E-value=0.00094  Score=54.32  Aligned_cols=221  Identities=11%  Similarity=0.042  Sum_probs=134.0

Q ss_pred             EEEEeCCC-CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648           15 SSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY   93 (309)
Q Consensus        15 ~~i~~s~~-~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~   93 (309)
                      -+..|++. +++..+=-..+.|.-||..+++.. .+. ....+..+++..++..++++     ...+.++|..+++....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~-----~~gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-----DDGLFLRDTATGVLTLH   93 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-----TTEEEEEETTTCCEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEEE-----eCccEEeecccceeeEE
Confidence            45668874 455555556788999998887543 222 23346677887777555543     23588999998875433


Q ss_pred             eee----cccCEEEEEecCCCCeEEEecCC----CcEEEeeCCCceeeeeee-ecCceeEEECCCCcEEEEE--ECCEEE
Q 021648           94 FKG----HHDRVVSLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVA--FGGYIR  162 (309)
Q Consensus        94 ~~~----h~~~v~~v~~~~~~~~l~s~s~D----g~v~~Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~i~  162 (309)
                      ..-    ....++.+.+.|+|++.++...+    +.-.+|.+..++...... ....+...+++++..+..+  ..+.|.
T Consensus        94 ~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1          94 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             eeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceee
Confidence            221    12357888899999866654322    233455444454332221 2223345666666544333  357888


Q ss_pred             EEECCCCC----cCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEEC-
Q 021648          163 MFDARKYE----KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-  237 (309)
Q Consensus       163 ~~d~~~~~----~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~s-  237 (309)
                      .|++....    ..........+.......+++.++|.+.++.-..+.|..||. .|+++..+...   ...+.+++|- 
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP---~~~~T~~~FGG  249 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP---GKQTTCPAFIG  249 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS---CSBEEEEEEES
T ss_pred             EeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCC---CCceEEEEEeC
Confidence            88764211    111112222233334567899999999988888899999996 68888877653   2456788995 


Q ss_pred             CCCCEEEEE
Q 021648          238 PEGMFVISG  246 (309)
Q Consensus       238 p~g~~l~s~  246 (309)
                      ||.+.|+..
T Consensus       250 ~d~~~LyvT  258 (295)
T d2ghsa1         250 PDASRLLVT  258 (295)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCCEEEEE
Confidence            787666543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.19  E-value=0.00098  Score=54.22  Aligned_cols=218  Identities=17%  Similarity=0.165  Sum_probs=128.2

Q ss_pred             EEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec
Q 021648           60 CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ  139 (309)
Q Consensus        60 ~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~  139 (309)
                      .|.+....+++..-  ..+.|..||.++++.. .+ .....+.++.+.++++++++ +.+ -+..+|..+++........
T Consensus        24 ~wd~~~~~l~wvDi--~~~~I~r~d~~~g~~~-~~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          24 TFDPASGTAWWFNI--LERELHELHLASGRKT-VH-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEETTTTEEEEEEG--GGTEEEEEETTTTEEE-EE-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             eEECCCCEEEEEEC--CCCEEEEEECCCCeEE-EE-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            34444445555432  2467888888887643 22 23457888998888876665 444 5788898887654332211


Q ss_pred             C------ceeEEECCCCcEEEEEEC-----CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEE-EEEeCCCcE
Q 021648          140 G------RPAAAYDDQGLVFAVAFG-----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHI  207 (309)
Q Consensus       140 ~------~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l-~~~~~dg~v  207 (309)
                      .      .+....++++.+..+..+     +.-.+|.+...   .....  .......+.++++++++.+ ++-+..+.|
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g---~~~~~--~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I  172 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG---KVTKL--FADISIPNSICFSPDGTTGYFVDTKVNRL  172 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT---EEEEE--EEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC---cEEEE--eeccCCcceeeecCCCceEEEeeccccee
Confidence            1      123455667766655431     23344443221   11111  1112234778999999855 455667889


Q ss_pred             EEEECCC--CeE---eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEEC-CC
Q 021648          208 HVLDSFR--GTL---LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT-PG  281 (309)
Q Consensus       208 ~i~d~~~--~~~---~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~-p~  281 (309)
                      +.++...  +..   ...+..........-.+++.++|+..++.-..+.|..||- +++.+..+..-...+++++|- ||
T Consensus       173 ~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d  251 (295)
T d2ghsa1         173 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPD  251 (295)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTT
T ss_pred             eEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCC
Confidence            9887642  111   1111111112234456889999998888877889999995 688877765433568999995 66


Q ss_pred             e-eEEEEcc
Q 021648          282 S-LMFVTGS  289 (309)
Q Consensus       282 ~-~~l~s~~  289 (309)
                      . .+++|..
T Consensus       252 ~~~LyvTta  260 (295)
T d2ghsa1         252 ASRLLVTSA  260 (295)
T ss_dssp             SCEEEEEEB
T ss_pred             CCEEEEEEC
Confidence            4 5666643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.07  E-value=0.00052  Score=54.63  Aligned_cols=203  Identities=9%  Similarity=0.090  Sum_probs=99.3

Q ss_pred             eEecCCCcceEEEEeCCCCCEEEEeeC----CC--cEEEEEcCCCceeeeeecc------ccceeEEEEecCCCEEEEEc
Q 021648            5 MSFRDYNGRISSMDFHKSSSYLVTASD----DE--SIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPTTVIYSS   72 (309)
Q Consensus         5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~----D~--~v~iWd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~s   72 (309)
                      +++..+.+.+...+|||||++||-.+.    +.  .|-+++..+++..+.....      ........++|+++.+++..
T Consensus        34 ~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          34 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            456677788999999999999875432    22  3556677777665432211      12345678999999888764


Q ss_pred             CCCC---CceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcE-----------EEeeCCCceeeeeeee
Q 021648           73 KNGW---DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTV-----------LLWDQRAEKCQGLLRV  138 (309)
Q Consensus        73 ~~g~---d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v-----------~~Wd~~~~~~~~~~~~  138 (309)
                      ....   ...+...+...++....   +......+.+.++++.+.....+...           ................
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (281)
T d1k32a2         114 AMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM  190 (281)
T ss_dssp             TTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred             ccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCC
Confidence            3321   22344555555543322   22222233333333333333222110           1111111111100000


Q ss_pred             cC-ceeEEECCCCcEEEEE-E--CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 021648          139 QG-RPAAAYDDQGLVFAVA-F--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  214 (309)
Q Consensus       139 ~~-~~~~~~~~~~~~~~~~-~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~  214 (309)
                      .. .......++ .++... .  ...|.++|+...+.   ..  +... .......+||||+.|+. ..++.++++|+.+
T Consensus       191 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~d~~g~~~---~~--lt~~-~~~~~~~~SpDG~~I~f-~~~~~l~~~d~~~  262 (281)
T d1k32a2         191 STHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL---RK--HTSF-TDYYPRHLNTDGRRILF-SKGGSIYIFNPDT  262 (281)
T ss_dssp             SSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC---EE--CCCC-CSSCEEEEEESSSCEEE-EETTEEEEECTTT
T ss_pred             ccccceeeeecc-ccceecccccccceEEEeCCCCce---EE--eecC-CCcccccCcCCCCEEEE-EeCCEEEEEECCC
Confidence            11 111111222 222222 1  23577777654322   11  1111 22334578999999876 4568899999987


Q ss_pred             CeEe
Q 021648          215 GTLL  218 (309)
Q Consensus       215 ~~~~  218 (309)
                      ++..
T Consensus       263 g~~~  266 (281)
T d1k32a2         263 EKIE  266 (281)
T ss_dssp             CCEE
T ss_pred             CCEE
Confidence            7654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.79  E-value=0.0033  Score=52.50  Aligned_cols=116  Identities=9%  Similarity=0.014  Sum_probs=70.8

Q ss_pred             EEEEeCCCCCEEEEeeCCC-----------cEEEEEcCCCceeee--ee-ccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648           15 SSMDFHKSSSYLVTASDDE-----------SIRLYDVTAATCLKT--IN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESL   80 (309)
Q Consensus        15 ~~i~~s~~~~~l~t~s~D~-----------~v~iWd~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i   80 (309)
                      .......+|++++-|+.+.           .+.+||..+++-.+.  .. .+.......++.+++..++.+..+  ...+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~--~~~~  100 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND--AKKT  100 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS--TTCE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC--Ccce
Confidence            3344466888888888532           367899988754332  11 122223445677888777766432  3679


Q ss_pred             EEEEccCCceEEEeeecc-cCEEEEEecCCCCeEEEecCC------CcEEEeeCCCcee
Q 021648           81 RLLSLHDNKYLRYFKGHH-DRVVSLSLCSSKDCFISGSLD------RTVLLWDQRAEKC  132 (309)
Q Consensus        81 ~~~d~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~s~D------g~v~~Wd~~~~~~  132 (309)
                      .+||..+++-...-.... ..-..++..+|++.++.++.+      ..+.+||+.+.+.
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            999998875432211111 112345667789988888753      3688999887754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.59  E-value=0.016  Score=48.88  Aligned_cols=229  Identities=14%  Similarity=0.148  Sum_probs=129.9

Q ss_pred             EEEeeCCCcEEEEEcCCCceeeeeeccc-----------------------------------------cceeEEEEec-
Q 021648           26 LVTASDDESIRLYDVTAATCLKTINSKK-----------------------------------------YGVDLVCFTS-   63 (309)
Q Consensus        26 l~t~s~D~~v~iWd~~~~~~~~~~~~~~-----------------------------------------~~v~~~~~~~-   63 (309)
                      +.||+.-|.|+|+-+.+++.++.+.-..                                         ..-..+++.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            6789999999999999888776432100                                         0001334433 


Q ss_pred             --CCCEEEEEcCCCCCceeEEEEccCCceEEEeee-cccCEEEEEecC--CCCeEEEecCCC------------------
Q 021648           64 --HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG-HHDRVVSLSLCS--SKDCFISGSLDR------------------  120 (309)
Q Consensus        64 --~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~-h~~~v~~v~~~~--~~~~l~s~s~Dg------------------  120 (309)
                        ||++++....  .+..|.+-|+...+..+...- ....+..+...+  +..+++..+.+.                  
T Consensus        96 tyDGrylFVNDk--an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          96 KYDGRFLFMNDK--ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEEEET--TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             ccceeEEEEEcC--CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence              5666666543  378899999988887665433 223456666554  444677666532                  


Q ss_pred             cEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEEEE-EC---------------CEEEEEE------------------
Q 021648          121 TVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVA-FG---------------GYIRMFD------------------  165 (309)
Q Consensus       121 ~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~---------------~~i~~~d------------------  165 (309)
                      .+-+.|.++.+....+.+.+. ..+..++++.++... .+               ..+.+++                  
T Consensus       174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            355678877776666555443 235556666544443 21               1233333                  


Q ss_pred             -----CCCCCcCCce-EEEeCCCCCCCeEEEEccCCCEEEEEe-CCCcEEEEECCCCeEe--------EEeeecCCCCCc
Q 021648          166 -----ARKYEKGPFD-IFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLL--------STYNVKPVSRNS  230 (309)
Q Consensus       166 -----~~~~~~~~~~-~~~~~~~~~~~~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~~~~--------~~~~~~~~~~~~  230 (309)
                           .+......+. .....   .....+.+||||+++++++ .+.+|.++|..+-..+        ......+...-.
T Consensus       254 V~VVD~~~~~~~~v~~yIPVp---KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglg  330 (459)
T d1fwxa2         254 VKVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  330 (459)
T ss_dssp             EEEEECSGG--CSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSC
T ss_pred             ceeecccccCCcceeEEEecC---CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcC
Confidence                 2221111111 01111   1234578999999987765 5899999997531110        000011111112


Q ss_pred             cceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648          231 TLEASFSPEGMFVISGSGDGSVYAWSVRS  259 (309)
Q Consensus       231 ~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~  259 (309)
                      ..-.+|...|.-.-|---|..|--|++..
T Consensus       331 PLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         331 PLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccccccCCCceEEEEeeccceEEEEecch
Confidence            23468988887666668999999999853

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.13  E-value=0.057  Score=45.39  Aligned_cols=234  Identities=9%  Similarity=0.104  Sum_probs=127.1

Q ss_pred             EEEeC---CCCCEEEEee-CCCcEEEEEcCCCceeeeeecc-ccceeEEEEecCCC--EEEEEcCCC-------------
Q 021648           16 SMDFH---KSSSYLVTAS-DDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPT--TVIYSSKNG-------------   75 (309)
Q Consensus        16 ~i~~s---~~~~~l~t~s-~D~~v~iWd~~~~~~~~~~~~~-~~~v~~~~~~~~~~--~~~~~s~~g-------------   75 (309)
                      .+++.   +||++|.... .+..|-+-|+++.++.+.+... ......+....+++  +++..+...             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            55564   4888875555 6889999999999986644322 12344445444443  444432210             


Q ss_pred             --CCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCC---------------------------------
Q 021648           76 --WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR---------------------------------  120 (309)
Q Consensus        76 --~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg---------------------------------  120 (309)
                        +.+.+.+.|.++.+......- ......+++++||+++++.+.+.                                 
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence              113456778887765444331 23455788999999887766431                                 


Q ss_pred             -----cEEEeeCCCce---eeeeeeecCc-eeEEECCCCcEEEEEE--CCEEEEEECCCCCcC------CceEEEeCCCC
Q 021648          121 -----TVLLWDQRAEK---CQGLLRVQGR-PAAAYDDQGLVFAVAF--GGYIRMFDARKYEKG------PFDIFSVGGDI  183 (309)
Q Consensus       121 -----~v~~Wd~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~------~~~~~~~~~~~  183 (309)
                           .+.+-|.+...   ....+.++.. ..+..++++.++.++.  +..+.++|++++..-      +..........
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el  327 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  327 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred             cEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence                 12222322110   1111222211 1346678888777664  689999998754210      00111111110


Q ss_pred             -CCCeEEEEccCCCEEEEEeCCCcEEEEECCCC----------eEeEEeeecC--CCCCccceEEECCCCCEEEEE---c
Q 021648          184 -SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----------TLLSTYNVKP--VSRNSTLEASFSPEGMFVISG---S  247 (309)
Q Consensus       184 -~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~----------~~~~~~~~~~--~~~~~~~~~~~sp~g~~l~s~---s  247 (309)
                       ..-.--+|+..|.-..+-..|.+|.-|++...          ..+.....+.  .|......-...|||++|++.   |
T Consensus       328 glgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~s  407 (459)
T d1fwxa2         328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS  407 (459)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred             CcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecccc
Confidence             12233478888877777778999999997322          3444444322  111111112346899999998   4


Q ss_pred             CCC
Q 021648          248 GDG  250 (309)
Q Consensus       248 ~Dg  250 (309)
                      .|.
T Consensus       408 kdr  410 (459)
T d1fwxa2         408 KDR  410 (459)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            454

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.99  E-value=0.1  Score=45.99  Aligned_cols=77  Identities=12%  Similarity=0.154  Sum_probs=49.3

Q ss_pred             CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCC-cEEEECCCee
Q 021648          205 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSL  283 (309)
Q Consensus       205 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v-~~l~~~p~~~  283 (309)
                      |.+.-||+.+++.+=...........    ..+-.|..+++|+.||.++.+|.++|+.+-++..-.+.. .=+.|..+|+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg----~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGG----TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCC----EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCc----eEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            35777888888776544432111111    223367888899999999999999999998875322211 1155666776


Q ss_pred             EE
Q 021648          284 MF  285 (309)
Q Consensus       284 ~l  285 (309)
                      +.
T Consensus       533 QY  534 (573)
T d1kb0a2         533 QY  534 (573)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.78  E-value=0.15  Score=44.81  Aligned_cols=77  Identities=18%  Similarity=0.159  Sum_probs=48.4

Q ss_pred             CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCC-CCcEEEECCCee
Q 021648          205 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT-EPPVIKWTPGSL  283 (309)
Q Consensus       205 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-~v~~l~~~p~~~  283 (309)
                      |.+.-+|+.+|+.+=+.....    ....-..+-.|..+++|+.||.++.+|.++|+.+-++..-.. .-+-+.|..||+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~----~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF----AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeccCCCceeeEcCCCC----CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence            467778888888764443221    111111222566788899999999999999999977643221 112266667886


Q ss_pred             EE
Q 021648          284 MF  285 (309)
Q Consensus       284 ~l  285 (309)
                      +.
T Consensus       520 qY  521 (571)
T d2ad6a1         520 QY  521 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.71  E-value=0.14  Score=43.28  Aligned_cols=247  Identities=13%  Similarity=0.146  Sum_probs=122.2

Q ss_pred             CCCcceEEEEeCCCCCEEE-EeeCC----CcEEEEEcCCCceee-eeeccccceeEEEEecCCCEEEEEcCC--------
Q 021648            9 DYNGRISSMDFHKSSSYLV-TASDD----ESIRLYDVTAATCLK-TINSKKYGVDLVCFTSHPTTVIYSSKN--------   74 (309)
Q Consensus         9 ~h~~~V~~i~~s~~~~~l~-t~s~D----~~v~iWd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~--------   74 (309)
                      ++.-.+...++|||++++| +-+.+    .++++.|+.+|+.+. .+...  ....++|.++++.+++....        
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~--~~~~~~W~~D~~~~~Y~~~~~~~~~~~~  199 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV--KFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE--CSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccc--cccceEEcCCCCEEEEEEeccccCcccc
Confidence            3333455778899999876 32222    378999999998664 23221  12467899999988775421        


Q ss_pred             -----CCCceeEEEEccCCc--eEEEeeeccc--CEEEEEecCCCCeEEEe---cCCCcEEEe--eCCCceee-------
Q 021648           75 -----GWDESLRLLSLHDNK--YLRYFKGHHD--RVVSLSLCSSKDCFISG---SLDRTVLLW--DQRAEKCQ-------  133 (309)
Q Consensus        75 -----g~d~~i~~~d~~~~~--~~~~~~~h~~--~v~~v~~~~~~~~l~s~---s~Dg~v~~W--d~~~~~~~-------  133 (309)
                           +....+..+.+.+..  .+..+.....  .+..+..++++++++..   +.+....+|  |.......       
T Consensus       200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  279 (430)
T d1qfma1         200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (430)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccce
Confidence                 112357777776643  2344444333  46677788898876532   234444555  43221110       


Q ss_pred             -eeee-ecCceeEEECCCCcEEEEEE----CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEE-eCCC-
Q 021648          134 -GLLR-VQGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEG-  205 (309)
Q Consensus       134 -~~~~-~~~~~~~~~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~-~~dg-  205 (309)
                       .... ............+.++....    .+.|...++..........+- ..+...+..-.++..+.+|+.. ..++ 
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi-~~~~~~~~~~~~~~~~~~lvl~~~~~~~  358 (430)
T d1qfma1         280 VKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV-PEHEKDVLEWVACVRSNFLVLCYLHDVK  358 (430)
T ss_dssp             EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEE-CCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             eEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEe-cccCcceeeeEEEEECCEEEEEEEcCCE
Confidence             0000 00000111112222332222    245555555433222112111 1111223333444445555444 4454 


Q ss_pred             -cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC----CcEEEEECCCCc
Q 021648          206 -HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD----GSVYAWSVRSGK  261 (309)
Q Consensus       206 -~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D----g~i~vwd~~~~~  261 (309)
                       .|++++...+.......   ...+.+..+...++...+.-.-.+    .+++-+|+.+++
T Consensus       359 ~~l~v~~~~~~~~~~~~~---~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         359 NTLQLHDLATGALLKIFP---LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEEEETTTCCEEEEEC---CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             eEEEEEECCCCcEEEecC---CCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence             68889988776544322   122334334444554433322122    578888888775

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.68  E-value=0.12  Score=42.36  Aligned_cols=233  Identities=12%  Similarity=0.134  Sum_probs=114.4

Q ss_pred             EEEEeCCCCCEEEEeeCC-CcEEEEEcCCCceeeeeeccc-cceeEEEEecCCCEEEEEcCCC---CCceeEEEEccCCc
Q 021648           15 SSMDFHKSSSYLVTASDD-ESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNG---WDESLRLLSLHDNK   89 (309)
Q Consensus        15 ~~i~~s~~~~~l~t~s~D-~~v~iWd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g---~d~~i~~~d~~~~~   89 (309)
                      .+..+.++|.+++.|+.+ .++.+||..+..-...-.... -.-..++..+++..++.+....   .-..+.+||..+++
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            456788999999999876 589999988654432211111 1123456667787766653211   12468899987764


Q ss_pred             eEEE--e-------eeccc-----CEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec-----------CceeE
Q 021648           90 YLRY--F-------KGHHD-----RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-----------GRPAA  144 (309)
Q Consensus        90 ~~~~--~-------~~h~~-----~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-----------~~~~~  144 (309)
                      -...  .       ..+..     .-..+...++++.++.++.++.+.+.|..+..........           .....
T Consensus       159 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (387)
T d1k3ia3         159 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM  238 (387)
T ss_dssp             EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred             eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence            2111  0       00100     0011122346777777777777777776655432221110           00111


Q ss_pred             EECCCCcEEEEE-EC--------CEEEEEECCCCCcCCceEEEeCC--CCCCCeEEEEccCCCEEEEEeCCC--------
Q 021648          145 AYDDQGLVFAVA-FG--------GYIRMFDARKYEKGPFDIFSVGG--DISDANVVKFSNDGRLMLLTTMEG--------  205 (309)
Q Consensus       145 ~~~~~~~~~~~~-~~--------~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~v~~s~dg~~l~~~~~dg--------  205 (309)
                      .....+.++..+ ..        ....+.++...............  ....-...+..+||++++.|+.+.        
T Consensus       239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~  318 (387)
T d1k3ia3         239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST  318 (387)
T ss_dssp             EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred             eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence            112233333332 11        12233332221111111111110  011123455668999999988531        


Q ss_pred             ---cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcC
Q 021648          206 ---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG  248 (309)
Q Consensus       206 ---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~  248 (309)
                         .+.+||..+.+-.. ....+.....-......|||+.++.|+.
T Consensus       319 ~~~~ve~Ydp~~~~W~~-~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         319 PVFTPEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             BCCCCEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             EeceEEEEECCCCeEEE-CCCCCCcccceEEEEECCCCEEEEEeCC
Confidence               47789987765332 1111111111123446899999999984

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.57  E-value=0.21  Score=43.71  Aligned_cols=77  Identities=13%  Similarity=0.190  Sum_probs=49.8

Q ss_pred             CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCC-CcEEEECCCee
Q 021648          205 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE-PPVIKWTPGSL  283 (309)
Q Consensus       205 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-v~~l~~~p~~~  283 (309)
                      |.+.-||+.+++.+=.+.....    ...-.++-.|..+.+|+.||.++.+|..+|+.+-++..-.+. -.=+.|..+|+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~----~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGk  513 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH----WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR  513 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cceEEEeCCCCeEeeeccCCCC----CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            5677789988887755443211    111122335678889999999999999999999876532211 11255666776


Q ss_pred             EE
Q 021648          284 MF  285 (309)
Q Consensus       284 ~l  285 (309)
                      +.
T Consensus       514 qy  515 (560)
T d1kv9a2         514 QY  515 (560)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.56  E-value=0.22  Score=43.84  Aligned_cols=76  Identities=22%  Similarity=0.414  Sum_probs=51.2

Q ss_pred             CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCC-CcEEEECCCee
Q 021648          205 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE-PPVIKWTPGSL  283 (309)
Q Consensus       205 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-v~~l~~~p~~~  283 (309)
                      |.+.-+|+.+|+.+=.....    .++..-..+-.|..+++|+.||.++.+|.++|+.+-++..-... -.=+.|..+|+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~----~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecCCC----CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            56788888888877544432    11222223457788889999999999999999999877532211 12267777886


Q ss_pred             E
Q 021648          284 M  284 (309)
Q Consensus       284 ~  284 (309)
                      +
T Consensus       542 q  542 (582)
T d1flga_         542 Q  542 (582)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.31  E-value=0.5  Score=37.49  Aligned_cols=195  Identities=15%  Similarity=0.256  Sum_probs=117.2

Q ss_pred             EeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC-CceEEEeee
Q 021648           18 DFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYLRYFKG   96 (309)
Q Consensus        18 ~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~-~~~~~~~~~   96 (309)
                      -.+|..+.||--+ ..++.|+|+++.+.++.+.-.+ .|.--.|-. .+.+....    +..|.-|+++. .++++.+..
T Consensus        69 IMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis-~~~L~lVT----~taVYHW~~~g~s~P~k~fdR  141 (327)
T d1utca2          69 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS-LNTVALVT----DNAVYHWSMEGESQPVKMFDR  141 (327)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESS-SSEEEEEC----SSEEEEEESSSSCCCEEEEEC
T ss_pred             hcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecC-CCEEEEEc----CCceEEEcccCCCCchhhhhh
Confidence            3578888887776 5699999999988887766544 343334433 34444443    55799999954 357888887


Q ss_pred             ccc----CEEEEEecCCCCeEEEec---C----CCcEEEeeCCCceeeeeeeecCceeE--EEC-----CCCcEEEEEE-
Q 021648           97 HHD----RVVSLSLCSSKDCFISGS---L----DRTVLLWDQRAEKCQGLLRVQGRPAA--AYD-----DQGLVFAVAF-  157 (309)
Q Consensus        97 h~~----~v~~v~~~~~~~~l~s~s---~----Dg~v~~Wd~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~-  157 (309)
                      |..    .|..-..+++.++++-.+   .    .|.+.++..+.+... .+  .++..+  .+.     .+..+++-+. 
T Consensus       142 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ-~i--eGhaa~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         142 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PI--EGHAASFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE-EE--CCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred             cccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc-cc--cceeeeeEEEEcCCCCCCceEEEEEEC
Confidence            764    455666678888765332   2    356678876544322 11  122211  111     1223444442 


Q ss_pred             ---CCEEEEEECCCCCc--CCceEE--EeCCCC----CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648          158 ---GGYIRMFDARKYEK--GPFDIF--SVGGDI----SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  222 (309)
Q Consensus       158 ---~~~i~~~d~~~~~~--~~~~~~--~~~~~~----~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~  222 (309)
                         ++++++.++.....  +++...  .+.-..    .=..++.+|+.-..+..-+.-|.++++|+.++.++..-.
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nR  294 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  294 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEee
Confidence               36889998765321  222211  111111    112356677777778888899999999999999887654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.96  E-value=0.58  Score=36.35  Aligned_cols=220  Identities=8%  Similarity=0.011  Sum_probs=121.6

Q ss_pred             CCcceEEEEeCCCCCEEE-EeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648           10 YNGRISSMDFHKSSSYLV-TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   88 (309)
Q Consensus        10 h~~~V~~i~~s~~~~~l~-t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~   88 (309)
                      +...+.+|+|++..+.+. +=..++.|+..+++.+.....+...-..+..+++..-+..++++...  .+.|.+.++...
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~--~~~I~~~~~dg~  111 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ--LDRIEVAKMDGT  111 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT--TTEEEEEETTSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccC--CCEEEEEecCCc
Confidence            444577899988766554 44556778888877554444443333456778887777778776532  568899998765


Q ss_pred             ceEEEeeecccCEEEEEecCCCCeE-EEecCCCcEEEe--eCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEE
Q 021648           89 KYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLW--DQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD  165 (309)
Q Consensus        89 ~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~Dg~v~~W--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  165 (309)
                      .....+.........+++.|...++ .+-...+.-+++  ++.....                            ..+. 
T Consensus       112 ~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~----------------------------~~i~-  162 (263)
T d1npea_         112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----------------------------RILA-  162 (263)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----------------------------EEEE-
T ss_pred             eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc----------------------------eeee-
Confidence            4333333344677888888755433 332211121222  1111000                            0000 


Q ss_pred             CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEE-EEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEE
Q 021648          166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  244 (309)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~  244 (309)
                                    .........+++++.++.| .+-...+.|...|.........+..  .  .....+++. +++...
T Consensus       163 --------------~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~--~--~~P~~lav~-~~~lYw  223 (263)
T d1npea_         163 --------------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG--L--QYPFAVTSY-GKNLYY  223 (263)
T ss_dssp             --------------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC--C--CSEEEEEEE-TTEEEE
T ss_pred             --------------eecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC--C--CCcEEEEEE-CCEEEE
Confidence                          0011233577887766555 4445677888888754333222221  1  122456664 344445


Q ss_pred             EEcCCCcEEEEECCCCceEEEeecCC-CCCcEEEEC
Q 021648          245 SGSGDGSVYAWSVRSGKEVASWMSFD-TEPPVIKWT  279 (309)
Q Consensus       245 s~s~Dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~~  279 (309)
                      |=...+.|...|..+++.+..+..+. ..+..|+..
T Consensus       224 td~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~  259 (263)
T d1npea_         224 TDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIA  259 (263)
T ss_dssp             EETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred             EECCCCEEEEEECCCCccceEECCCCCCCcceEEEe
Confidence            55567889999999888776653322 344455543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.78  E-value=1.2  Score=39.06  Aligned_cols=76  Identities=14%  Similarity=0.156  Sum_probs=49.0

Q ss_pred             CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCC-CcEEEECCCee
Q 021648          205 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE-PPVIKWTPGSL  283 (309)
Q Consensus       205 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-v~~l~~~p~~~  283 (309)
                      |.+.-||+.+++.+=.....    .....-..+-.|..++.|+.||.++.+|..+|+.+-++..-.+. -+=+.|.-+|+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~----~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER----FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ceEEEEeCCCCceecccCCC----CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCE
Confidence            56888888888876433321    11111122336778888999999999999999999877532221 12255666776


Q ss_pred             E
Q 021648          284 M  284 (309)
Q Consensus       284 ~  284 (309)
                      +
T Consensus       529 Q  529 (596)
T d1w6sa_         529 Q  529 (596)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.8  Score=35.52  Aligned_cols=223  Identities=8%  Similarity=0.045  Sum_probs=115.6

Q ss_pred             CcceEEEEeCCCCCEEE-EeeCCCcEEEEEcCCCc---eeee-eeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648           11 NGRISSMDFHKSSSYLV-TASDDESIRLYDVTAAT---CLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   85 (309)
Q Consensus        11 ~~~V~~i~~s~~~~~l~-t~s~D~~v~iWd~~~~~---~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~   85 (309)
                      -..+.+++|++..+.|. +=..++.|+--+++...   ...+ +......+..+++.+-+..++++..  ..+.|.+.++
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~--~~~~I~v~~~  106 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVADT  106 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET--TTTEEEEEET
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEec--CCCEEEeEec
Confidence            34556788887665543 33345555555554211   1122 2222234567888777778887643  2568999998


Q ss_pred             cCCceEEEeeecccCEEEEEecCCCC-eEEEe-cCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEE
Q 021648           86 HDNKYLRYFKGHHDRVVSLSLCSSKD-CFISG-SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRM  163 (309)
Q Consensus        86 ~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~-s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (309)
                      ........+........++++.|... .+++- +..+.|..-++.....                            ..+
T Consensus       107 ~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~----------------------------~~l  158 (266)
T d1ijqa1         107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----------------------------YSL  158 (266)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE----------------------------EEE
T ss_pred             CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce----------------------------ecc
Confidence            87665555555666778888887433 34442 1222232222211110                            001


Q ss_pred             EECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEE-EEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE
Q 021648          164 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML-LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  242 (309)
Q Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~-~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  242 (309)
                      ..               ......+.+++++.++.|. +-...++|...|+............ ........+++. ++..
T Consensus       159 ~~---------------~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~-~~~~~p~~lav~-~~~l  221 (266)
T d1ijqa1         159 VT---------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-KRLAHPFSLAVF-EDKV  221 (266)
T ss_dssp             EC---------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT-TTTSSEEEEEEE-TTEE
T ss_pred             cc---------------cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCC-CcccccEEEEEE-CCEE
Confidence            10               0112235677887665444 4456678888887543322222211 111223455654 3444


Q ss_pred             EEEEcCCCcEEEEECCCCceEEEeecCCCCCcEE-EECC
Q 021648          243 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVI-KWTP  280 (309)
Q Consensus       243 l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l-~~~p  280 (309)
                      +.+-..++.|+..+..+++....+......+..| .++|
T Consensus       222 y~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~i~v~~~  260 (266)
T d1ijqa1         222 FWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHN  260 (266)
T ss_dssp             EEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESG
T ss_pred             EEEECCCCeEEEEECCCCcceEEEEcCCCCceEEEEECC
Confidence            4555677888888888877666555443333333 3454

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.32  E-value=1.6  Score=35.17  Aligned_cols=126  Identities=13%  Similarity=0.108  Sum_probs=65.5

Q ss_pred             CCEEEEEECCCCCcCCceEEEeCCC-CCCCeEEEEccCCCEEEEEeC---------------CCcEEEEECCCCeEeEEe
Q 021648          158 GGYIRMFDARKYEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTM---------------EGHIHVLDSFRGTLLSTY  221 (309)
Q Consensus       158 ~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~v~~s~dg~~l~~~~~---------------dg~v~i~d~~~~~~~~~~  221 (309)
                      ..+|.+|++......-....++... ....+.+++..+|.++++...               -+...+|....++.....
T Consensus       123 ~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~  202 (340)
T d1v04a_         123 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA  202 (340)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEE
T ss_pred             CceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEc
Confidence            3578888764322111111222222 235688888899998888421               012333333333322211


Q ss_pred             eecCCCCCccceEEECCCCCEEEEE-cCCCcEEEEECCCCceEEE--eecCCCCCcEEEECC-CeeEEEE
Q 021648          222 NVKPVSRNSTLEASFSPEGMFVISG-SGDGSVYAWSVRSGKEVAS--WMSFDTEPPVIKWTP-GSLMFVT  287 (309)
Q Consensus       222 ~~~~~~~~~~~~~~~sp~g~~l~s~-s~Dg~i~vwd~~~~~~~~~--~~~~~~~v~~l~~~p-~~~~l~s  287 (309)
                      ..    -.....++++||+++|+.+ +..+.|++|++.....+..  .....+.+--+.+.+ ++.+.+.
T Consensus       203 ~~----l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         203 EG----FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             EE----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             CC----CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            11    1223468999999877666 6678999999975433222  122333334466655 3443333

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.18  E-value=2.4  Score=36.79  Aligned_cols=109  Identities=8%  Similarity=0.071  Sum_probs=61.9

Q ss_pred             CCCEEEEeeCCCcEEEEEc-CCCceeeeeecccc----ce-------eEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648           22 SSSYLVTASDDESIRLYDV-TAATCLKTINSKKY----GV-------DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   89 (309)
Q Consensus        22 ~~~~l~t~s~D~~v~iWd~-~~~~~~~~~~~~~~----~v-------~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~   89 (309)
                      +|.+.++.+.++.|.--|. ++|+.+-.+.....    ..       +.+++.  +..++..+.   |+.+.-.|.++|+
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~---~g~l~alda~tG~  136 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQA---NGHLLALDAKTGK  136 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECT---TSEEEEEETTTCC
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeC---CCcEEeeehhhhh
Confidence            4555555556788888887 47998876542211    00       112322  335555543   7788888999999


Q ss_pred             eEEEeeecc----cCEEEEEecCCCCeEEEec-----CCCcEEEeeCCCceeeee
Q 021648           90 YLRYFKGHH----DRVVSLSLCSSKDCFISGS-----LDRTVLLWDQRAEKCQGL  135 (309)
Q Consensus        90 ~~~~~~~h~----~~v~~v~~~~~~~~l~s~s-----~Dg~v~~Wd~~~~~~~~~  135 (309)
                      .+....-..    ..+++--...++..++..+     .+|.|+.+|.++++....
T Consensus       137 ~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  191 (571)
T d2ad6a1         137 INWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             hhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEE
Confidence            876654211    1111111112343333332     378899999999887654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.54  E-value=0.42  Score=40.49  Aligned_cols=58  Identities=17%  Similarity=0.385  Sum_probs=39.8

Q ss_pred             CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecC-----CCCCccceEEECCC
Q 021648          182 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-----VSRNSTLEASFSPE  239 (309)
Q Consensus       182 ~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~sp~  239 (309)
                      .......++|.|||+++++--..|+|++++..++..........     ....-...++|+|+
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34556789999999999887778999999987766543332211     11233567999985

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.29  E-value=3.1  Score=35.89  Aligned_cols=54  Identities=20%  Similarity=0.335  Sum_probs=38.1

Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC-EEEEEc
Q 021648          192 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS  247 (309)
Q Consensus       192 s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~s~s  247 (309)
                      +-.|.++..++.||.++-+|..+|+.+=++..........  +.|..||+ ||+..+
T Consensus       466 ~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P--~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         466 STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP--MTFELAGRQYVAIMA  520 (560)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEEE
T ss_pred             EECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC--EEEEECCEEEEEEEe
Confidence            3356677789999999999999999998877643332222  46667885 555443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.09  E-value=2  Score=33.12  Aligned_cols=165  Identities=7%  Similarity=-0.006  Sum_probs=92.8

Q ss_pred             cceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648           12 GRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   90 (309)
Q Consensus        12 ~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~   90 (309)
                      ..+.+++++.-+. +..+-...+.|.+.+++...+...+...-.....+++.|....++++..+.....|.--++.....
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            4577888886444 445666678899998875544333333334567888888888888775432222344445544333


Q ss_pred             EEEeeecccCEEEEEecCCCCeE-EEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCC
Q 021648           91 LRYFKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY  169 (309)
Q Consensus        91 ~~~~~~h~~~v~~v~~~~~~~~l-~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  169 (309)
                      .......-....++++.+.++.| ++-...++|..-|+........+.                                
T Consensus       159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~--------------------------------  206 (263)
T d1npea_         159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE--------------------------------  206 (263)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE--------------------------------
T ss_pred             eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC--------------------------------
Confidence            33232233456778887655544 444455666665554322111100                                


Q ss_pred             CcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEe
Q 021648          170 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  221 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~  221 (309)
                                 +. .....+++. +++++.+-...+.|...|..+++.+..+
T Consensus       207 -----------~~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         207 -----------GL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             -----------CC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             -----------CC-CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEE
Confidence                       00 011244554 4556666667788888888888776654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=88.24  E-value=7.1  Score=33.56  Aligned_cols=53  Identities=13%  Similarity=0.233  Sum_probs=38.1

Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC-EEEEE
Q 021648          192 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG  246 (309)
Q Consensus       192 s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~s~  246 (309)
                      +-.|.++.+++.||.++.+|..+|+.+=++..........  +.|..||+ ||+..
T Consensus       485 stagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~GkQYv~v~  538 (573)
T d1kb0a2         485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGRQYVSVA  538 (573)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEE
T ss_pred             EEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCEEEEEEE
Confidence            3467788889999999999999999998887643322222  56777886 44333

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.17  E-value=4.9  Score=31.62  Aligned_cols=218  Identities=11%  Similarity=0.202  Sum_probs=115.5

Q ss_pred             CCcEEEEEcCCCce-eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCC
Q 021648           32 DESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK  110 (309)
Q Consensus        32 D~~v~iWd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~  110 (309)
                      ..+|.|-|+..+.. ++..-    ....+-.+|..+-++.-+    ..++.++|+++.+.++.+.-... |.-=.|-.+ 
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi----~AdsAIMhP~~~IiALra----g~~LQiFnletK~klks~~~~e~-VvfWkWis~-  113 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA----GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISL-  113 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC----CCSEEEECSSSSEEEEEE----TTEEEEEETTTTEEEEEEECSSC-CCEEEESSS-
T ss_pred             CceEEEEECCCCCcceeccc----chhhhhcCCCCcEEEEec----CCeEEEEehhHhhhhceEEcCCC-cEEEEecCC-
Confidence            34677778765442 22111    122344556665555543    35899999999998888775554 433355543 


Q ss_pred             CeEEEecCCCcEEEeeCCCc-eeeeeeeec----CceeEE--ECCCCcEEE-EEE-------CCEEEEEECCCCCcCCc-
Q 021648          111 DCFISGSLDRTVLLWDQRAE-KCQGLLRVQ----GRPAAA--YDDQGLVFA-VAF-------GGYIRMFDARKYEKGPF-  174 (309)
Q Consensus       111 ~~l~s~s~Dg~v~~Wd~~~~-~~~~~~~~~----~~~~~~--~~~~~~~~~-~~~-------~~~i~~~d~~~~~~~~~-  174 (309)
                      +.|+-.. +..|.-|+++.. .+...+...    +.-...  .+++...++ .+.       .|.+.+|.......+.+ 
T Consensus       114 ~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ie  192 (327)
T d1utca2         114 NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  192 (327)
T ss_dssp             SEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEC
T ss_pred             CEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccc
Confidence            3444333 668999998543 233333211    111122  234443333 221       26788998765322111 


Q ss_pred             ------eEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe---E---eEEeee--cCC-CCCccceEEECCC
Q 021648          175 ------DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT---L---LSTYNV--KPV-SRNSTLEASFSPE  239 (309)
Q Consensus       175 ------~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~---~---~~~~~~--~~~-~~~~~~~~~~sp~  239 (309)
                            ..+.+.+...+...++|...      +...++++|.++....   .   ......  .+. ...-...+..|+.
T Consensus       193 Ghaa~F~~~~~~g~~~~~~lf~fa~r------~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~k  266 (327)
T d1utca2         193 GHAASFAQFKMEGNAEESTLFCFAVR------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK  266 (327)
T ss_dssp             CSEEEEEEECCTTCSSCEEEEEEEEE------ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETT
T ss_pred             ceeeeeEEEEcCCCCCCceEEEEEEC------CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeecc
Confidence                  11112222222233333221      1233689998875421   1   111111  111 1223456778888


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEe
Q 021648          240 GMFVISGSGDGSVYAWSVRSGKEVASW  266 (309)
Q Consensus       240 g~~l~s~s~Dg~i~vwd~~~~~~~~~~  266 (309)
                      -..+..-+.-|.|+++|++++.++..-
T Consensus       267 ygiiyviTK~G~i~lyDleTgt~i~~n  293 (327)
T d1utca2         267 HDVVFLITKYGYIHLYDLETGTCIYMN  293 (327)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEecCcEEEEEEcccccEEEEe
Confidence            788888999999999999999886543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.15  E-value=5.9  Score=32.54  Aligned_cols=60  Identities=8%  Similarity=0.100  Sum_probs=39.4

Q ss_pred             eeEEEEecCCCEEEEEcC-CCC-CceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEe
Q 021648           56 VDLVCFTSHPTTVIYSSK-NGW-DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISG  116 (309)
Q Consensus        56 v~~~~~~~~~~~~~~~s~-~g~-d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~  116 (309)
                      +...+++|++++++++-+ +|. -.+++++|+++++.+...-.. .....+.|.+|++.|.-.
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y~  188 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYN  188 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEE
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCCCEEEEE
Confidence            445688999998876533 333 368999999999866422111 112467899998876543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=87.71  E-value=5.8  Score=31.91  Aligned_cols=200  Identities=13%  Similarity=0.159  Sum_probs=106.5

Q ss_pred             CCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEe----cCCC--EEEEEcCCC-CCceeEEEEccC-CceEE
Q 021648           21 KSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT----SHPT--TVIYSSKNG-WDESLRLLSLHD-NKYLR   92 (309)
Q Consensus        21 ~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~----~~~~--~~~~~s~~g-~d~~i~~~d~~~-~~~~~   92 (309)
                      |+.+++++....+-|.+||++ |+.++.+....  +..+...    ..++  .+++++... ...++.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr--~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGK--LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCSSC--EEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecccCC--cCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            456788888888889999985 88887765432  2222211    1222  345554321 123677887653 33333


Q ss_pred             Eeeec-------ccCEEEEEe--cCC-CC-eEEEecCCCcEEEeeCC---Cce----eeeeeeecCc-eeEEECCCCcEE
Q 021648           93 YFKGH-------HDRVVSLSL--CSS-KD-CFISGSLDRTVLLWDQR---AEK----CQGLLRVQGR-PAAAYDDQGLVF  153 (309)
Q Consensus        93 ~~~~h-------~~~v~~v~~--~~~-~~-~l~s~s~Dg~v~~Wd~~---~~~----~~~~~~~~~~-~~~~~~~~~~~~  153 (309)
                      .+...       ...+..+|+  ++. +. +++....+|.+..|.+.   .+.    .+..+..... ..+.+++....+
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L  194 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL  194 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcE
Confidence            33221       124677777  554 44 45666778999888653   222    2222333322 245666655555


Q ss_pred             EEEE-CCEEEEEECCCCCc-CCceEEEeCC--CCCCCeEEEE--cc--CCCEEEEEeCCCcEEEEECCC-CeEeEEeee
Q 021648          154 AVAF-GGYIRMFDARKYEK-GPFDIFSVGG--DISDANVVKF--SN--DGRLMLLTTMEGHIHVLDSFR-GTLLSTYNV  223 (309)
Q Consensus       154 ~~~~-~~~i~~~d~~~~~~-~~~~~~~~~~--~~~~~~~v~~--s~--dg~~l~~~~~dg~v~i~d~~~-~~~~~~~~~  223 (309)
                      ..+. +..|..++...... ....+....+  -..++..+++  .+  +|.++++.-.+.+..+||... ...+..|..
T Consensus       195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i  273 (353)
T d1h6la_         195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI  273 (353)
T ss_dssp             EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred             EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEE
Confidence            5554 44454444432111 1111222222  2345666653  22  455666666789999999876 366666654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.09  E-value=8.5  Score=33.14  Aligned_cols=53  Identities=15%  Similarity=0.263  Sum_probs=38.7

Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC-EEEEE
Q 021648          192 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG  246 (309)
Q Consensus       192 s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~s~  246 (309)
                      +..|.++.+++.||+++-+|..+|+.+=++..........  +.|..+|+ ||+..
T Consensus       494 stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~G~qYv~i~  547 (582)
T d1flga_         494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQDGEQYLGVT  547 (582)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEE
T ss_pred             EEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCEEEEEEE
Confidence            4466777789999999999999999998887643332222  57778995 55443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=86.17  E-value=6.9  Score=31.19  Aligned_cols=61  Identities=21%  Similarity=0.276  Sum_probs=35.5

Q ss_pred             CCeEEEEccCCCEE-EEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC-CCCEEEEE
Q 021648          185 DANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISG  246 (309)
Q Consensus       185 ~~~~v~~s~dg~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~s~  246 (309)
                      -.+.+++|||+++| ++-+..++|++|++.....+........ ...+-.+.+.+ +|.+.+++
T Consensus       207 ~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l-~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         207 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-DTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-SSEEEEEEECTTTCCEEEEE
T ss_pred             ccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecC-CCCCCccEEecCCCEEEEEE
Confidence            35789999999765 4556788999998764332222111111 12334577766 45555444

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.74  E-value=8.6  Score=31.91  Aligned_cols=36  Identities=6%  Similarity=0.117  Sum_probs=29.2

Q ss_pred             ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee
Q 021648           98 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ  133 (309)
Q Consensus        98 ~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~  133 (309)
                      -+..++++|.||++.|++--..|.|++++..++...
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~   61 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVK   61 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEe
Confidence            457789999999999988766899999987766543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.67  E-value=7.6  Score=29.56  Aligned_cols=116  Identities=7%  Similarity=-0.035  Sum_probs=69.8

Q ss_pred             cceEEEEeCCCC-CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648           12 GRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   90 (309)
Q Consensus        12 ~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~   90 (309)
                      ..+.++++++.+ ++..+-...+.|.+.+++...+...+.........+++.|....++++.. +....|.-.++.....
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~-~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTSCCE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc-CCCcceeEeccCCCce
Confidence            345678887644 44556566778999998765555544444445677888887777777643 3345566666654433


Q ss_pred             EEEeeecccCEEEEEecCCCCe-EEEecCCCcEEEeeCC
Q 021648           91 LRYFKGHHDRVVSLSLCSSKDC-FISGSLDRTVLLWDQR  128 (309)
Q Consensus        91 ~~~~~~h~~~v~~v~~~~~~~~-l~s~s~Dg~v~~Wd~~  128 (309)
                      .......-....++++.+.++. .++-+..+.|..-|+.
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~d  194 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECC
Confidence            3333333456678888776553 3343455566655553